Citrus Sinensis ID: 017726
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 367 | 2.2.26 [Sep-21-2011] | |||||||
| Q56YA5 | 401 | Serine--glyoxylate aminot | yes | no | 0.978 | 0.895 | 0.860 | 0.0 | |
| P55819 | 402 | Serine--glyoxylate aminot | yes | no | 0.953 | 0.870 | 0.558 | 1e-116 | |
| O08374 | 405 | Serine--glyoxylate aminot | N/A | no | 0.961 | 0.871 | 0.536 | 1e-111 | |
| P16421 | 383 | Soluble hydrogenase 42 kD | N/A | no | 0.926 | 0.887 | 0.347 | 9e-55 | |
| Q58369 | 385 | Uncharacterized aminotran | yes | no | 0.931 | 0.888 | 0.358 | 6e-54 | |
| P14776 | 384 | Soluble hydrogenase, smal | N/A | no | 0.934 | 0.893 | 0.318 | 1e-48 | |
| O32148 | 416 | Purine catabolism protein | yes | no | 0.899 | 0.793 | 0.263 | 7e-33 | |
| P21549 | 392 | Serine--pyruvate aminotra | yes | no | 0.904 | 0.846 | 0.305 | 4e-31 | |
| Q5RDP0 | 392 | Serine--pyruvate aminotra | yes | no | 0.907 | 0.849 | 0.301 | 5e-30 | |
| Q54GT6 | 407 | Serine--pyruvate aminotra | yes | no | 0.937 | 0.845 | 0.268 | 9e-30 |
| >sp|Q56YA5|SGAT_ARATH Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana GN=AGT1 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/359 (86%), Positives = 338/359 (94%)
Query: 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
MDYMY PG++HLFVPGPV+IP+ VIRAMNRNNEDYRSPA+PALTKTLLED+KKIFKTTSG
Sbjct: 1 MDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSG 60
Query: 61 TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
TPFL PTTGTGAWESALTNTLSPGDRI+SFLIGQFSLLWIDQQ+RLNFNVDVVESDWG+G
Sbjct: 61 TPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQG 120
Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
A L VLASKL+ D HTIKAICIVHNETATGVTN++S VR LLD Y+HPAL LVDGVSSI
Sbjct: 121 ANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSI 180
Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240
CA+DFRMDEWG+DVALTGSQKALSLPTG+GIVCASPKALEA+KT+KS++VFFDW DY+KF
Sbjct: 181 CALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEATKTSKSLKVFFDWNDYLKF 240
Query: 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
Y LGT+WPYTPSIQLLYGLRAALDLIFEEGLEN+I RH RLGKATRLAVEAWGLKNCTQK
Sbjct: 241 YKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQK 300
Query: 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359
EEW S+TVTAV+VP HI+ SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG++NE+
Sbjct: 301 EEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQL 359
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Photorespiratory enzyme that catalyzes transamination reactions with multiple substrates. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 5EC: 1 |
| >sp|P55819|SGAA_METEA Serine--glyoxylate aminotransferase OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=sgaA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 418 bits (1074), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/356 (55%), Positives = 259/356 (72%), Gaps = 6/356 (1%)
Query: 7 PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIP 66
PG+NHLFVPGP +IPD+V+RAM +ED+RS P+LTK L ED KK+F +T GT FL P
Sbjct: 7 PGRNHLFVPGPTNIPDRVMRAMMVQSEDHRSVDFPSLTKPLFEDTKKVFGSTEGTIFLFP 66
Query: 67 TTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVL 126
+GTG WESAL+NTL+ GD++++ GQFS LWID QRL +V V E +WG GAK + +
Sbjct: 67 ASGTGIWESALSNTLARGDKVLAARFGQFSHLWIDMAQRLGLDVVVQEEEWGTGAKPEKI 126
Query: 127 ASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR 186
L AD H IKA+ +VHNETATGVT+N+ VRK +D HPAL VDGVSSI ++ F+
Sbjct: 127 EEALRADKNHEIKAVMVVHNETATGVTSNIGAVRKAIDAAGHPALLFVDGVSSIGSLPFK 186
Query: 187 MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEAS-----KTAKSVRVFFDWKDYIKFY 241
DEW +D A+ GSQK L LP G+G++C S KAL+A+ + + RV+FDW+D K
Sbjct: 187 ADEWKVDCAIAGSQKGLMLPAGLGVICVSQKALKAAEGQSGRNDRLARVYFDWEDQKK-Q 245
Query: 242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKE 301
N ++PYTP + LLYGLR AL +FEEGLENV RH LG+ATR AV AWGLK C +
Sbjct: 246 NPTGYFPYTPPLPLLYGLREALACLFEEGLENVYHRHAVLGEATRQAVAAWGLKTCAKSP 305
Query: 302 EWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV 357
EW SDTVTA++ P +++++I++ A+ RYNL+LG GL++VAGKVFRIGH+G LNE+
Sbjct: 306 EWNSDTVTAILAPEGVDAAKIIKHAYVRYNLALGAGLSQVAGKVFRIGHVGDLNEL 361
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Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) (taxid: 272630) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 4 EC: 5 |
| >sp|O08374|SGAA_HYPME Serine--glyoxylate aminotransferase OS=Hyphomicrobium methylovorum GN=sgaA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 400 bits (1028), Expect = e-111, Method: Compositional matrix adjust.
Identities = 191/356 (53%), Positives = 249/356 (69%), Gaps = 3/356 (0%)
Query: 11 HLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGT 70
HLF+PGP +IPD V AMN ED RSP P T L ED+KK FK G F+ P++GT
Sbjct: 6 HLFIPGPTNIPDAVRMAMNIPMEDMRSPEFPKFTLPLFEDLKKAFKMKDGRVFIFPSSGT 65
Query: 71 GAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKL 130
GAWESA+ NTL+ GD+++ GQFSLLW+D +RL V+V + +WG G ++ A L
Sbjct: 66 GAWESAVENTLATGDKVLMSRFGQFSLLWVDMCERLGLKVEVCDEEWGTGVPVEKYADIL 125
Query: 131 AADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW 190
A D H IKA+ + HNETATGV+++++ VRK LD +HPAL +VDGVSS+ ++D RM EW
Sbjct: 126 AKDKNHEIKAVFVTHNETATGVSSDVAGVRKALDAAKHPALLMVDGVSSVGSLDMRMGEW 185
Query: 191 GIDVALTGSQKALSLPTGMGIVCASPKALE--ASKTAKSVRVFFDWKDYIKFYNLGTFWP 248
G+D ++GSQK LPTG+GI+ S KAL+ SK + R FF ++D IK + G F+P
Sbjct: 186 GVDCCVSGSQKGFMLPTGLGILAVSQKALDINKSKNGRMNRCFFSFEDMIKTNDQG-FFP 244
Query: 249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV 308
YTP+ QLL GLR +LDL+F EGL+NV RH RL R AV+AWGLK C ++ +W+SDTV
Sbjct: 245 YTPATQLLRGLRTSLDLLFAEGLDNVFARHTRLASGVRAAVDAWGLKLCAKEPKWYSDTV 304
Query: 309 TAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLL 364
+A++VP I+S+ I + A+ RYN S GLGLNKVAGKVFRIGHLG L+EVM L
Sbjct: 305 SAILVPEGIDSNAITKTAYYRYNTSFGLGLNKVAGKVFRIGHLGMLDEVMIGGALF 360
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Hyphomicrobium methylovorum (taxid: 84) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 4 EC: 5 |
| >sp|P16421|DHSS_ANACY Soluble hydrogenase 42 kDa subunit OS=Anabaena cylindrica PE=1 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (545), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 120/345 (34%), Positives = 196/345 (56%), Gaps = 5/345 (1%)
Query: 12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
L +PGP +P+ + A+ ++ +R+ + + +++K + +T S ++ +GTG
Sbjct: 7 LMIPGPTPVPEAALLALAKHPIGHRTSEFSNMMGEVTQNLKWLHQTESDV-LMLNVSGTG 65
Query: 72 AWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA 131
A E+ + N LSPGDRI+ G+F W++ Q NV+ + ++WG+ D A KL
Sbjct: 66 AVEAGMINFLSPGDRILVGSNGKFGERWVEVGQAFGLNVEAITAEWGQPLDPDKFAQKLQ 125
Query: 132 ADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWG 191
ADT IKA+ I H+ET+TGV N+L + + E+ AL +VD V+S+ A + +D G
Sbjct: 126 ADTNKEIKAVIITHSETSTGVINDLVAINSHVKEHGQ-ALIIVDAVTSLGAYNVPVDALG 184
Query: 192 IDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTP 251
+DV +GSQK +P G+G V SPKA EA KTAK + + D Y K T P+TP
Sbjct: 185 LDVVASGSQKGYMIPPGLGFVSVSPKAWEAYKTAKLPKYYLDLGKYRKATAKNT-TPFTP 243
Query: 252 SIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAV 311
+ L+ L L ++ +EGLE++ RH R ATR A++A L +E S +TAV
Sbjct: 244 PVNLMVALHTTLGMMKKEGLESIFTRHERQKNATRAAMKALNLP-LFAADECASPAITAV 302
Query: 312 IVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNE 356
P + + +I +R++++L G + ++ K+FR+GHLG +++
Sbjct: 303 ATPG-MEADKIRSLMKKRFDIALAGGQDHLSNKIFRVGHLGFVSD 346
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Soluble hydrogenase catalyzes both production and consumption of hydrogen from suitable artificial electron donors or acceptors. This subunit catalyzes the tritium-exchange activity. Anabaena cylindrica (taxid: 1165) EC: 1 EC: . EC: 1 EC: 2 EC: . EC: - EC: . EC: - |
| >sp|Q58369|Y959_METJA Uncharacterized aminotransferase MJ0959 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0959 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (538), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 194/349 (55%), Gaps = 7/349 (2%)
Query: 9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTT 68
K L +PGP +P +V+ AM +R+ L + +E +KK+F T + T FLI +
Sbjct: 7 KKLLMIPGPTMVPPEVLNAMALPVIGHRTKDYSNLLEDTIEKLKKVFITENDT-FLITGS 65
Query: 69 GTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLAS 128
GT A + A++N + GD++++ + G F + + + ++ +WG+ A+ + A
Sbjct: 66 GTAAMDMAISNIIKRGDKVLNIVTGNFGERFANIVKAYKGEAIRLDVEWGDMAEPE--AV 123
Query: 129 KLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMD 188
K D IKA+ +VHNET+TG N + ++ +++ +Y AL++VD VSS+ +D
Sbjct: 124 KEILDKYDDIKAVTVVHNETSTGARNPIKEIGEVVKDY--DALYIVDTVSSLGGDYVNVD 181
Query: 189 EWGIDVALTGSQKALSLPTGMGIVCASPKALEA-SKTAKSVRVFFDWKDYIKFYNLGTFW 247
++ ID+ +TGSQK L+ P G+ + S KA E K V + D Y K+Y
Sbjct: 182 KFHIDICVTGSQKCLAAPPGLAAITVSEKAWEVIKKNDDKVGFYLDLLAYKKYYEEKKQT 241
Query: 248 PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDT 307
PYTPS+ L Y L ALDL+ EEG+EN ++RH RL KATR +EA G++ KE S T
Sbjct: 242 PYTPSVNLTYALNVALDLVLEEGIENRVKRHERLAKATRAGLEAMGIE-LFAKERARSVT 300
Query: 308 VTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNE 356
VT+ P I S+ +YN+ + G +AGK+FRIGH+G E
Sbjct: 301 VTSAKYPEGIEDSKFRGILSNKYNIVVAGGQKHLAGKIFRIGHMGICGE 349
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Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|P14776|DHSS_SYNP1 Soluble hydrogenase, small subunit OS=Synechococcus sp. (strain PCC 6716) PE=3 SV=1 | Back alignment and function description |
|---|
Score = 194 bits (492), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/348 (31%), Positives = 187/348 (53%), Gaps = 5/348 (1%)
Query: 9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTT 68
K L +PGP +P+ V+ ++ ++ +RS + + IK + +T + ++ +
Sbjct: 4 KAMLMIPGPTPVPESVLLSLGKHPIGHRSGEFSQIMAAMTAGIKWLHQTQNEV-LILAAS 62
Query: 69 GTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLAS 128
GTGA E+ + N LS GDR++ G+F W + + + + WG+ D +
Sbjct: 63 GTGAMEAGIINFLSAGDRVVVGCNGKFGDRWGEVCDAYGLTTERISAPWGQPLNPDDFKA 122
Query: 129 KLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMD 188
L KA+ + H+ET+TGV N+L + + + + AL +VD V+S+ A+ +D
Sbjct: 123 VLDGHRQKPSKAVIVTHSETSTGVINDLEAINRHVKAHGQ-ALIIVDAVTSLGAVSVPID 181
Query: 189 EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP 248
EWG+DV +GSQK +P G+ V SPKA EA KTA + + D Y K T P
Sbjct: 182 EWGLDVVGSGSQKGYMIPPGLAFVSVSPKAWEAYKTATLPKFYLDLGKYRKDAAKHTT-P 240
Query: 249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV 308
+TP + L + L+ AL+++ EGLE + +RH+RL +ATR A++A L + S +
Sbjct: 241 FTPPVNLFFALKTALEMMQAEGLEAIFQRHQRLMQATRAAMKALNLP-LYAADSCASPAI 299
Query: 309 TAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNE 356
TAV P + + I +R++++L G + + G++FRIGHLG + +
Sbjct: 300 TAV-APQGVEAENIRSLMKKRFDIALAGGQDHLKGQIFRIGHLGFVGD 346
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Soluble hydrogenase catalyzes both production and consumption of hydrogen from suitable artificial electron donors or acceptors. This subunit catalyzes the tritium-exchange activity. Synechococcus sp. (strain PCC 6716) (taxid: 32048) EC: 1 EC: . EC: 1 EC: 2 EC: . EC: - EC: . EC: - |
| >sp|O32148|PUCG_BACSU Purine catabolism protein PucG OS=Bacillus subtilis (strain 168) GN=pucG PE=1 SV=1 | Back alignment and function description |
|---|
Score = 141 bits (356), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 97/368 (26%), Positives = 169/368 (45%), Gaps = 38/368 (10%)
Query: 12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
+ PGPV + +V+R M+ PA + +E ++++F+T + + I T
Sbjct: 14 IMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRA 73
Query: 72 AWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA 131
E+ L + + P D ++ + G+F L + +R NV ++E +WG + + ++
Sbjct: 74 GIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIK 133
Query: 132 ADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWG 191
K + +VH ET+TG + L + + ALF+VD V++I + ++DEW
Sbjct: 134 KVKP---KIVAMVHGETSTGRIHPLKAIGEAC--RTEDALFIVDAVATIGGCEVKVDEWK 188
Query: 192 IDVALTGSQKALSLPTGMGI---------VCASPKALEASKTAKSVRVFFDW-----KDY 237
ID A+ G+QK LS+P+GM V A+ K +E ++ R +Y
Sbjct: 189 IDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNY 248
Query: 238 IKFYNLGTFWP------YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA 291
L +W +T + +LY LR + L+ EEGLE ERHR A ++A
Sbjct: 249 FDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKA 308
Query: 292 WGLKNCTQKEEWFSD------TVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKV 345
GL+ F D VT V +P I+ + ++ + + +AGK+
Sbjct: 309 MGLR-------LFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKI 361
Query: 346 FRIGHLGH 353
+RIG +G+
Sbjct: 362 WRIGTMGY 369
|
Could encode ureidoglycolase or L-alanine:glyoxylate aminotransferase, or perhaps both activities. Bacillus subtilis (strain 168) (taxid: 224308) EC: 2 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|P21549|SPYA_HUMAN Serine--pyruvate aminotransferase OS=Homo sapiens GN=AGXT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (341), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 107/350 (30%), Positives = 163/350 (46%), Gaps = 18/350 (5%)
Query: 12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
L PGP ++P +++ A S + + + E I+ +F+T + +I +G
Sbjct: 25 LLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHC 84
Query: 72 AWESALTNTLSPGDRIISFLIGQFSLLW----IDQQQRLNFNVDVVESDWGEGAKLDVLA 127
A E+AL N L PGD SFL+G + W +D +R+ V + D G L +
Sbjct: 85 ALEAALVNVLEPGD---SFLVGANGI-WGQRAVDIGERIGARVHPMTKDPGGHYTLQEVE 140
Query: 128 SKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRM 187
LA H + + H E++TGV L +L Y+ L LVD V+S+ M
Sbjct: 141 EGLAQ---HKPVLLFLTHGESSTGVLQPLDGFGELCHRYK--CLLLVDSVASLGGTPLYM 195
Query: 188 DEWGIDVALTGSQKALSLPTGMGIVCASPKALEA--SKTAKSVRVFFDWKDYIKFYNLGT 245
D GID+ +GSQKAL+ P G ++ S KA + S+ K + D K F+
Sbjct: 196 DRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDD 255
Query: 246 ---FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEE 302
+ +T + LY LR +L LI E+GLEN +HR ++A GL+ +
Sbjct: 256 QPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPA 315
Query: 303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352
TVT V VP+ + +IV +++ + GL GKV RIG LG
Sbjct: 316 LRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLG 365
|
Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q5RDP0|SPYA_PONAB Serine--pyruvate aminotransferase OS=Pongo abelii GN=AGXT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 106/351 (30%), Positives = 162/351 (46%), Gaps = 18/351 (5%)
Query: 12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
L PGP ++ +++ A S + + + E I+ +F+T + +I +
Sbjct: 25 LLGPGPSNLAPRIMAAGGLQIIGPMSKDMYQIMDEIKEGIRYVFQTRNPLTLVISGSAHC 84
Query: 72 AWESALTNTLSPGDRIISFLIGQFSLLW----IDQQQRLNFNVDVVESDWGEGAKLDVLA 127
A E+AL N L PGD SFL+G + W +D +R+ V + D G L +
Sbjct: 85 ALEAALVNVLEPGD---SFLVGANGI-WGQRAVDIGERMGARVHPMTKDPGGHYTLQEVE 140
Query: 128 SKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRM 187
LA H + + H E++TGV L +L Y+ L LVD V S+ M
Sbjct: 141 EGLAQ---HKPVLLFLTHGESSTGVLQPLDGFGELCHRYK--CLLLVDSVVSVGGTPVYM 195
Query: 188 DEWGIDVALTGSQKALSLPTGMGIVCASPKALEA--SKTAKSVRVFFDWKDYIKFYNLGT 245
D+ GID+ +GSQKAL+ P G ++ S KA + S+ K + D K F+
Sbjct: 196 DQQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDD 255
Query: 246 ---FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEE 302
+ +T I LY LR +L LI E+GLEN +HR ++A GL+ +
Sbjct: 256 QPRMYHHTIPIISLYSLRESLALIAEQGLENSWRKHREAAAYLHGRLQALGLQLFVKDPA 315
Query: 303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH 353
TVT V VP+ + +IV +++ + GL GKV RIG LG+
Sbjct: 316 LRLPTVTTVAVPAGYDWRDIVSYVMDHFDIEIMGGLGPPTGKVLRIGLLGY 366
|
Pongo abelii (taxid: 9601) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q54GT6|SPYA_DICDI Serine--pyruvate aminotransferase OS=Dictyostelium discoideum GN=agxt PE=3 SV=1 | Back alignment and function description |
|---|
Score = 131 bits (329), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 103/383 (26%), Positives = 174/383 (45%), Gaps = 39/383 (10%)
Query: 12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
L PGP ++ +V + + + Y + + +E ++ +F+T + I GT
Sbjct: 21 LLGPGPSNLHPRVNQQLISSMVGYTDASYYKVMDETMELMRYLFQTDNHFTIPISGAGTA 80
Query: 72 AWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA 131
A E+ ++N + PGD+++ + G FS R N+ V+ WG+ L+ + S L
Sbjct: 81 AMETCVSNLIEPGDKVVCLVSGFFSDRIYQMAVRYGGNILKVDKQWGQWFALEEIESAL- 139
Query: 132 ADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWG 191
H + +V ET+TGV + V +L +Y L +VD V+++ + +D+W
Sbjct: 140 --VQHKPSLLTLVFGETSTGVKQQMEGVGELCKKYN--CLLMVDCVAALGGVPVFVDDWK 195
Query: 192 IDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP--- 248
ID TG+QK LS P G+ + S A T K+ +W Y+ LG +W
Sbjct: 196 IDACYTGTQKCLSGPPGISPLTFSNAACHKIATRKTPVA--NW--YLDCNLLGGYWCPEF 251
Query: 249 --------------------YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLA 288
+T LLY LR AL L+ EEGL+NV +RH+
Sbjct: 252 NLADGTIAKEEKSTIPKRYHHTTPANLLYSLREALVLLVEEGLDNVWKRHQDAAILLYAG 311
Query: 289 VEAWGLK------NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVA 342
+E+ GLK N ++ ++T V +P ++ +++ +N+ + G+ A
Sbjct: 312 LESLGLKPFVPQLNEAPEKGGRLFSLTTVNIPDGVDGKMVMKYLLDNFNIEIAGGIGAFA 371
Query: 343 GKVFRIGHLGHLNEVMFNFQLLF 365
GKV+RIG +G N N +LL
Sbjct: 372 GKVWRIGLMGQ-NANPGNIKLLI 393
|
Dual metabolic roles of gluconeogenesis and glyoxylate detoxification. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 367 | ||||||
| 449444883 | 401 | PREDICTED: serine--glyoxylate aminotrans | 0.978 | 0.895 | 0.891 | 0.0 | |
| 224104247 | 401 | predicted protein [Populus trichocarpa] | 0.978 | 0.895 | 0.888 | 0.0 | |
| 34014758 | 401 | aminotransferase 2 [Cucumis melo] | 0.978 | 0.895 | 0.883 | 0.0 | |
| 148524119 | 401 | aminotransferase 2 [Cucumis sativus] | 0.978 | 0.895 | 0.880 | 0.0 | |
| 148524123 | 401 | aminotransferase 2 [Cucumis sativus] | 0.978 | 0.895 | 0.880 | 0.0 | |
| 74229863 | 401 | serine-glyoxylate aminotransferase [Spir | 0.978 | 0.895 | 0.891 | 0.0 | |
| 148524121 | 401 | aminotransferase 2 [Cucumis melo] | 0.978 | 0.895 | 0.880 | 0.0 | |
| 148524125 | 401 | aminotransferase 2 [Cucumis melo] | 0.978 | 0.895 | 0.877 | 0.0 | |
| 118489646 | 401 | unknown [Populus trichocarpa x Populus d | 0.978 | 0.895 | 0.883 | 0.0 | |
| 255580601 | 401 | serine-pyruvate aminotransferase, putati | 0.978 | 0.895 | 0.883 | 0.0 |
| >gi|449444883|ref|XP_004140203.1| PREDICTED: serine--glyoxylate aminotransferase-like [Cucumis sativus] gi|449480967|ref|XP_004156042.1| PREDICTED: serine--glyoxylate aminotransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/359 (89%), Positives = 349/359 (97%)
Query: 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
MDY+Y PG+NHLFVPGPV+IP+QV+RAMNRNNEDYRSPAVPALTKTLLED+KKIFKTTSG
Sbjct: 1 MDYVYGPGRNHLFVPGPVNIPEQVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKTTSG 60
Query: 61 TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
TPFL PTTGTGAWESALTNTLSPGDRI+SFLIGQFSLLWIDQQQRLNF VDV+ESDWGEG
Sbjct: 61 TPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFKVDVIESDWGEG 120
Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
AKLDVLA+KLAADT HTIKA+CIVHNETATGVTN+LS VR++LDEYRHPALFLVDGVSSI
Sbjct: 121 AKLDVLAAKLAADTDHTIKAVCIVHNETATGVTNDLSLVRRILDEYRHPALFLVDGVSSI 180
Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240
CA+DFRMD+WG+DVALTGSQKALSLPTG+GIVCASP+ALEASKTAKS+RVFFDWKDY+KF
Sbjct: 181 CALDFRMDDWGVDVALTGSQKALSLPTGIGIVCASPRALEASKTAKSLRVFFDWKDYLKF 240
Query: 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
YNLGT+WPYTPSIQLLYGLRAALDL+FEEGLENVI RH+RLG+ATRLAVEAWGLKNCTQK
Sbjct: 241 YNLGTYWPYTPSIQLLYGLRAALDLVFEEGLENVIARHKRLGQATRLAVEAWGLKNCTQK 300
Query: 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359
EEW SDTVTAV+VP +I+SSEIVRRAW+RYNLSLGLGLNKVAGKVFRIGHLGHLNE+
Sbjct: 301 EEWHSDTVTAVLVPPYIDSSEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQL 359
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224104247|ref|XP_002313371.1| predicted protein [Populus trichocarpa] gi|222849779|gb|EEE87326.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/359 (88%), Positives = 343/359 (95%)
Query: 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
MDY Y PG+NHLFVPGPV+IP+ VIRAMNRNNEDYRSPAVPA+TKTLLED+KKIFKTTSG
Sbjct: 1 MDYFYGPGRNHLFVPGPVNIPEPVIRAMNRNNEDYRSPAVPAMTKTLLEDVKKIFKTTSG 60
Query: 61 TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
PFLIPTTGTGAWESALTNTLSPGDR +SFLIGQFSLLWIDQQQRL FNVDVVESDWG+G
Sbjct: 61 IPFLIPTTGTGAWESALTNTLSPGDRTVSFLIGQFSLLWIDQQQRLGFNVDVVESDWGQG 120
Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
A LD+LASKLA DTAHTIKA+CIVHNETATGVTNNL+KVRK+LD+Y HPALFLVDGVSSI
Sbjct: 121 ANLDILASKLAEDTAHTIKAVCIVHNETATGVTNNLAKVRKILDDYSHPALFLVDGVSSI 180
Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240
CA+DFRMDEWG+DVALTGSQKALSLPTGMGIVCASPKA+EASKTAKSVRVFFDWKDY+KF
Sbjct: 181 CALDFRMDEWGVDVALTGSQKALSLPTGMGIVCASPKAIEASKTAKSVRVFFDWKDYLKF 240
Query: 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
YNLGTFWPYTPSIQLLYGLRAALDL+F EGLENV ERH RLGKATRLAVEAWGLKNCTQK
Sbjct: 241 YNLGTFWPYTPSIQLLYGLRAALDLLFAEGLENVFERHARLGKATRLAVEAWGLKNCTQK 300
Query: 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359
EEWFSDTVTAV+VP +I+S+EIVRR W+RYNLSLGLGLNKVAGKVFRIGHLG+LNE+
Sbjct: 301 EEWFSDTVTAVVVPPYIDSAEIVRRGWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQL 359
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|34014758|gb|AAQ56195.1| aminotransferase 2 [Cucumis melo] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/359 (88%), Positives = 349/359 (97%)
Query: 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
MDY+Y PG+NHLFVPGPV+IP+QV+RAMNRNNEDYRSPAVPALTKTLLED+KKIFKTTSG
Sbjct: 1 MDYVYGPGRNHLFVPGPVNIPEQVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKTTSG 60
Query: 61 TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
TPFL PTTGTGAWESALTNTLSPGDRI+SFLIGQFSLLWIDQQQRLNF VDV+ES+WGEG
Sbjct: 61 TPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFKVDVIESEWGEG 120
Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
AKLDVLA+KLAADT HTIKA+CIVHNETATGVTN+LS VR++LDEYRHPALFLVDGVSSI
Sbjct: 121 AKLDVLAAKLAADTDHTIKAVCIVHNETATGVTNDLSLVRRILDEYRHPALFLVDGVSSI 180
Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240
CA+DFRMD+WG+DVALTGSQKALSLPTG+GIVCASP+ALEASKTAKS+RVFFDWKDY+KF
Sbjct: 181 CALDFRMDDWGVDVALTGSQKALSLPTGIGIVCASPRALEASKTAKSLRVFFDWKDYLKF 240
Query: 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
YNLGT+WPYTPSIQLLYGLRAALDL+FEEGLENVI RH+RLG+ATRLAVEAWGLKNCTQK
Sbjct: 241 YNLGTYWPYTPSIQLLYGLRAALDLVFEEGLENVIARHKRLGQATRLAVEAWGLKNCTQK 300
Query: 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359
EEW SDTVTAV+VP +I+S+EIVRRAW+RYNLSLGLGLNKVAGKVFRIGHLG+LNE+
Sbjct: 301 EEWHSDTVTAVVVPPYIDSAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQL 359
|
Source: Cucumis melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|148524119|gb|ABQ81922.1| aminotransferase 2 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/359 (88%), Positives = 349/359 (97%)
Query: 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
MDY+Y PG+NHLFVPGPV+IP+QV+RAMNRNNEDYRSPAVPALTKTLLED+KKIFKT+SG
Sbjct: 1 MDYVYGPGRNHLFVPGPVNIPEQVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKTSSG 60
Query: 61 TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
TPFL PTTGTGAWESALTNTLSPGDRI+SFLIGQFSLLWIDQQQRLNF VDV+ES+WGEG
Sbjct: 61 TPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFKVDVIESEWGEG 120
Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
AKLDVLA+KLAADT HTIKA+CIVHNETATGVTN+LS VR++LDEYRHPALFLVDGVSSI
Sbjct: 121 AKLDVLAAKLAADTDHTIKAVCIVHNETATGVTNDLSLVRRILDEYRHPALFLVDGVSSI 180
Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240
CA+DFRMD+WG+DVALTGSQKALSLPTG+GIVCASP+ALEASKTAKS+RVFFDWKDY+KF
Sbjct: 181 CALDFRMDDWGVDVALTGSQKALSLPTGIGIVCASPRALEASKTAKSLRVFFDWKDYLKF 240
Query: 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
YNLGT+WPYTPSIQLLYGLRAALDL+FEEGLENVI RH+RLG+ATRLAVEAWGLKNCTQK
Sbjct: 241 YNLGTYWPYTPSIQLLYGLRAALDLVFEEGLENVIARHKRLGQATRLAVEAWGLKNCTQK 300
Query: 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359
EEW SDTVTAV+VP +I+S+EIVRRAW+RYNLSLGLGLNKVAGKVFRIGHLG+LNE+
Sbjct: 301 EEWHSDTVTAVVVPPYIDSAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQL 359
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|148524123|gb|ABQ81924.1| aminotransferase 2 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/359 (88%), Positives = 348/359 (96%)
Query: 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
MDY+Y PG+NHLFVPGPV+IP+QV+RAMNRNNEDYRSPAVPALTKTLLED+KKIFKTTSG
Sbjct: 1 MDYVYGPGRNHLFVPGPVNIPEQVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKTTSG 60
Query: 61 TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
TPF PTTGTGAWESALTNTLSPGDRI+SFLIGQFSLLWIDQQQRLNF VDV+ES+WGEG
Sbjct: 61 TPFSFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFKVDVIESEWGEG 120
Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
AKLDVLA+KLAADT HTIKA+CIVHNETATGVTN+LS VR++LDEYRHPALFLVDGVSSI
Sbjct: 121 AKLDVLAAKLAADTDHTIKAVCIVHNETATGVTNDLSLVRRILDEYRHPALFLVDGVSSI 180
Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240
CA+DFRMD+WG+DVALTGSQKALSLPTG+GIVCASP+ALEASKTAKS+RVFFDWKDY+KF
Sbjct: 181 CALDFRMDDWGVDVALTGSQKALSLPTGIGIVCASPRALEASKTAKSLRVFFDWKDYLKF 240
Query: 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
YNLGT+WPYTPSIQLLYGLRAALDL+FEEGLENVI RH+RLG+ATRLAVEAWGLKNCTQK
Sbjct: 241 YNLGTYWPYTPSIQLLYGLRAALDLVFEEGLENVIARHKRLGQATRLAVEAWGLKNCTQK 300
Query: 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359
EEW SDTVTAV+VP +I+S+EIVRRAW+RYNLSLGLGLNKVAGKVFRIGHLG+LNE+
Sbjct: 301 EEWHSDTVTAVVVPPYIDSAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQL 359
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|74229863|gb|ABA00460.1| serine-glyoxylate aminotransferase [Spirodela polyrhiza] | Back alignment and taxonomy information |
|---|
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/359 (89%), Positives = 343/359 (95%)
Query: 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
MDY+Y PG+NHLFVPGPV+IP+ VIRAMNRNNEDYRSPAVPALTKTLLED+KKIFKTTSG
Sbjct: 1 MDYVYGPGRNHLFVPGPVNIPEPVIRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKTTSG 60
Query: 61 TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
TPFLIPTTGTGAWESALTNTLSPGDRI+SFLIGQFSLLWIDQQQRLNFNVDVVESDWG G
Sbjct: 61 TPFLIPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGLG 120
Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
A LDVLA KLAAD +H+IKAICIVHNETATGVTNNL+ VRKLLD+YRHPAL LVDGVSSI
Sbjct: 121 ANLDVLAEKLAADHSHSIKAICIVHNETATGVTNNLATVRKLLDDYRHPALLLVDGVSSI 180
Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240
CA+DFRMDEWG+DVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDW DY+KF
Sbjct: 181 CALDFRMDEWGVDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWNDYLKF 240
Query: 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
Y +GT+WPYTPSIQLLYGLRAALDLIFEEGLENVI RH RLG ATRLAVEAWGLKNCTQK
Sbjct: 241 YKMGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIRRHSRLGTATRLAVEAWGLKNCTQK 300
Query: 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359
EEWFSDTVTAV+VP +I+SSEIVRRAW+R+NLSLGLGLNKVAGKVFRIGHLG++NE+
Sbjct: 301 EEWFSDTVTAVVVPGYIDSSEIVRRAWKRFNLSLGLGLNKVAGKVFRIGHLGNVNELQL 359
|
Source: Spirodela polyrhiza Species: Spirodela polyrhiza Genus: Spirodela Family: Araceae Order: Alismatales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|148524121|gb|ABQ81923.1| aminotransferase 2 [Cucumis melo] | Back alignment and taxonomy information |
|---|
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/359 (88%), Positives = 348/359 (96%)
Query: 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
MDY+Y PG+NHLFVPGPV+IP+QV+RAMNRNNEDYRSPAVPALTKTLLED+KKIFKTTSG
Sbjct: 1 MDYVYGPGRNHLFVPGPVNIPEQVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKTTSG 60
Query: 61 TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
TPFL PTTGTGAWESALTNTLSPGDRI+SFLIGQFSLLWIDQQQRLNF VDV+ES+WGEG
Sbjct: 61 TPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFKVDVIESEWGEG 120
Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
AKLDVLA+KLAADT HTIKA+CIVHNETATGVTN+LS VR++LDEYRHPALFLVDGV SI
Sbjct: 121 AKLDVLAAKLAADTDHTIKAVCIVHNETATGVTNDLSLVRRILDEYRHPALFLVDGVPSI 180
Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240
CA+DFRMD+WG+DVALTGSQKALSLPTG+GIVCASP+ALEASKTAKS+RVFFDWKDY+KF
Sbjct: 181 CALDFRMDDWGVDVALTGSQKALSLPTGIGIVCASPRALEASKTAKSLRVFFDWKDYLKF 240
Query: 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
YNLGT+WPYTPSIQLLYGLRAALDL+FEEGLENVI RH+RLG+ATRLAVEAWGLKNCTQK
Sbjct: 241 YNLGTYWPYTPSIQLLYGLRAALDLVFEEGLENVIARHKRLGQATRLAVEAWGLKNCTQK 300
Query: 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359
EEW SDTVTAV+VP +I+S+EIVRRAW+RYNLSLGLGLNKVAGKVFRIGHLG+LNE+
Sbjct: 301 EEWHSDTVTAVVVPPYIDSAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQL 359
|
Source: Cucumis melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|148524125|gb|ABQ81925.1| aminotransferase 2 [Cucumis melo] | Back alignment and taxonomy information |
|---|
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/359 (87%), Positives = 348/359 (96%)
Query: 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
MDY+Y PG+NHLFVPGPV+IP+QV+RAMNRNNEDYRSPAVPALTKTLLED+KKIFKTTSG
Sbjct: 1 MDYVYGPGRNHLFVPGPVNIPEQVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKTTSG 60
Query: 61 TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
TPFL PTTGTGAWESALTNTLSPGDRI+SFLIGQFSLLWIDQQQRLNF VDV+ES+WGEG
Sbjct: 61 TPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFKVDVIESEWGEG 120
Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
AKLDVLA+KLAADT HTIKA+CIVHNETATGVTN+LS VR++LDEYRHPALFLVDGVSSI
Sbjct: 121 AKLDVLAAKLAADTDHTIKAVCIVHNETATGVTNDLSLVRRILDEYRHPALFLVDGVSSI 180
Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240
CA+DFRMD+WG+DVALTGSQK LSLPTG+GIVCASP+ALEASKTAKS+RVFFDWKDY+KF
Sbjct: 181 CALDFRMDDWGVDVALTGSQKVLSLPTGIGIVCASPRALEASKTAKSLRVFFDWKDYLKF 240
Query: 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
YNLGT+WPYTPSIQLLYGLRAALDL+FEEGLENVI RH+RLG+ATRLAVEAWGLKNCTQK
Sbjct: 241 YNLGTYWPYTPSIQLLYGLRAALDLVFEEGLENVIARHKRLGQATRLAVEAWGLKNCTQK 300
Query: 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359
EEW SDTVTAV+VP +++S+EIVRRAW+RYNLSLGLGLNKVAGKVFRIGHLG+LNE+
Sbjct: 301 EEWHSDTVTAVVVPPYMDSAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQL 359
|
Source: Cucumis melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118489646|gb|ABK96624.1| unknown [Populus trichocarpa x Populus deltoides] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/359 (88%), Positives = 341/359 (94%)
Query: 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
MDY Y PG+NHLFVPGPV+IP+ VIRAMNRNNEDYRSPAVPA+TKTLLED+KKIFKTTSG
Sbjct: 1 MDYFYGPGRNHLFVPGPVNIPEPVIRAMNRNNEDYRSPAVPAMTKTLLEDVKKIFKTTSG 60
Query: 61 TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
PFLIPTTGTGAWESALTNTLSPGDR +SFLIGQFSLLWIDQQQRL FNVDVVESDWG+G
Sbjct: 61 IPFLIPTTGTGAWESALTNTLSPGDRTVSFLIGQFSLLWIDQQQRLGFNVDVVESDWGQG 120
Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
A D+LASKLA DTAHTIKA+CIVHNETATGVTNNL+KVRK+LD+Y HPALFLVDGVSSI
Sbjct: 121 ANFDILASKLAEDTAHTIKAVCIVHNETATGVTNNLAKVRKILDDYSHPALFLVDGVSSI 180
Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240
CA+DFRMDEWG+DVALTGSQKALSLPTGMGIVCASPKA+EASKTAKSVRVFFDWKDY+KF
Sbjct: 181 CALDFRMDEWGVDVALTGSQKALSLPTGMGIVCASPKAIEASKTAKSVRVFFDWKDYLKF 240
Query: 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
YNLGTFWPYTPSIQLLYGLRAALDL+F EGLENV ERH R GKATRLAVEAWGLKNCTQK
Sbjct: 241 YNLGTFWPYTPSIQLLYGLRAALDLLFAEGLENVFERHARPGKATRLAVEAWGLKNCTQK 300
Query: 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359
EEWFSDTVTAV+VP +I+S+EIVRR W+RYNLSLGLGLNKVAGKVFRIGHLG+LNE+
Sbjct: 301 EEWFSDTVTAVVVPPYIDSAEIVRRGWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQL 359
|
Source: Populus trichocarpa x Populus deltoides Species: Populus trichocarpa x Populus deltoides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255580601|ref|XP_002531124.1| serine-pyruvate aminotransferase, putative [Ricinus communis] gi|223529288|gb|EEF31258.1| serine-pyruvate aminotransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/359 (88%), Positives = 346/359 (96%)
Query: 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
MDY+Y PG+NHLFVPGPV+IP+ VIRAMNRNNEDYRSPAVPALTKTLLED+KKIFKTT+G
Sbjct: 1 MDYVYGPGRNHLFVPGPVNIPEPVIRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKTTTG 60
Query: 61 TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
TPFL PTTGTGAWESALTNTLSPGDR ISFLIGQFSLLWIDQQQRL F+VDVV+S WG+G
Sbjct: 61 TPFLFPTTGTGAWESALTNTLSPGDRTISFLIGQFSLLWIDQQQRLGFDVDVVKSQWGQG 120
Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
A LD+LASKLAAD+AHTIKA+CIVHNETATGVTN+L+KVRK+LD+YRHPALFLVDGVSSI
Sbjct: 121 ANLDILASKLAADSAHTIKAVCIVHNETATGVTNDLAKVRKILDDYRHPALFLVDGVSSI 180
Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240
CA+DFRMDEWG+DVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDY+KF
Sbjct: 181 CALDFRMDEWGVDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYLKF 240
Query: 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
Y +GTFWPYTPSIQLLYGLRAALDLIFEEGL+NVIERH RLGKATRLAVEAWGL NCTQK
Sbjct: 241 YKMGTFWPYTPSIQLLYGLRAALDLIFEEGLDNVIERHARLGKATRLAVEAWGLNNCTQK 300
Query: 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359
EEWFSDTVTAV+VP +I+S+EIV+RAW+RYNLSLGLGLNKVAGKVFRIGHLG+LNE+
Sbjct: 301 EEWFSDTVTAVLVPPYIDSTEIVKRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQL 359
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 367 | ||||||
| TAIR|locus:2041649 | 401 | AGT "alanine:glyoxylate aminot | 0.972 | 0.890 | 0.865 | 6.2e-172 | |
| TIGR_CMR|SPO_A0144 | 396 | SPO_A0144 "serine--glyoxylate | 0.950 | 0.881 | 0.468 | 1.5e-83 | |
| TIGR_CMR|CHY_2699 | 382 | CHY_2699 "soluble hydrogenase, | 0.923 | 0.887 | 0.372 | 7.5e-57 | |
| TIGR_CMR|SPO_3029 | 402 | SPO_3029 "serine--glyoxylate t | 0.931 | 0.850 | 0.357 | 2.5e-49 | |
| TIGR_CMR|DET_0600 | 362 | DET_0600 "soluble hydrogenase, | 0.923 | 0.936 | 0.323 | 1.8e-48 | |
| TIGR_CMR|GSU_3260 | 357 | GSU_3260 "phosphoserine aminot | 0.904 | 0.929 | 0.305 | 3.9e-37 | |
| UNIPROTKB|Q8E9E1 | 377 | agxT "Serine-pyruvate aminotra | 0.934 | 0.909 | 0.280 | 3.1e-35 | |
| TIGR_CMR|SO_4343 | 377 | SO_4343 "aminotransferase, cla | 0.934 | 0.909 | 0.280 | 3.1e-35 | |
| FB|FBgn0014031 | 394 | Spat "Serine pyruvate aminotra | 0.934 | 0.870 | 0.301 | 6.5e-35 | |
| UNIPROTKB|Q9KUW7 | 372 | VC_0392 "Aminotransferase, cla | 0.937 | 0.924 | 0.277 | 2.2e-34 |
| TAIR|locus:2041649 AGT "alanine:glyoxylate aminotransferase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1671 (593.3 bits), Expect = 6.2e-172, P = 6.2e-172
Identities = 309/357 (86%), Positives = 338/357 (94%)
Query: 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
MDYMY PG++HLFVPGPV+IP+ VIRAMNRNNEDYRSPA+PALTKTLLED+KKIFKTTSG
Sbjct: 1 MDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSG 60
Query: 61 TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
TPFL PTTGTGAWESALTNTLSPGDRI+SFLIGQFSLLWIDQQ+RLNFNVDVVESDWG+G
Sbjct: 61 TPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQG 120
Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
A L VLASKL+ D HTIKAICIVHNETATGVTN++S VR LLD Y+HPAL LVDGVSSI
Sbjct: 121 ANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSI 180
Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240
CA+DFRMDEWG+DVALTGSQKALSLPTG+GIVCASPKALEA+KT+KS++VFFDW DY+KF
Sbjct: 181 CALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEATKTSKSLKVFFDWNDYLKF 240
Query: 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
Y LGT+WPYTPSIQLLYGLRAALDLIFEEGLEN+I RH RLGKATRLAVEAWGLKNCTQK
Sbjct: 241 YKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQK 300
Query: 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV 357
EEW S+TVTAV+VP HI+ SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG++NE+
Sbjct: 301 EEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNEL 357
|
|
| TIGR_CMR|SPO_A0144 SPO_A0144 "serine--glyoxylate transaminase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
Identities = 164/350 (46%), Positives = 225/350 (64%)
Query: 9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTT 68
+N +F+PGP +IP+ + +A + D+RSP + ++ + K+ + F+ P+T
Sbjct: 4 QNPVFIPGPTNIPESLRKACDMPTIDHRSPLFGQILHPARAGVRAVLKSETAEIFIFPST 63
Query: 69 GTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLAS 128
GTG WE+ALTNTLS GD +++ G FS WID QR V+VVE+ WGEG D
Sbjct: 64 GTGGWETALTNTLSAGDGVLAARNGMFSHRWIDMCQRHGLAVEVVETPWGEGLPADRYEE 123
Query: 129 KLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMD 188
LAADT H IKA+ HNETATGV ++++ VR+ LD+ HPAL VDGVSSI ++DFR D
Sbjct: 124 ILAADTHHRIKAVLATHNETATGVRSDIAAVRRALDKAGHPALLFVDGVSSIGSMDFRFD 183
Query: 189 EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP 248
EW +DVA+TGSQK LP G+ IV S KA+EA+ T R FFD D + Y +P
Sbjct: 184 EWRVDVAVTGSQKGFMLPAGLAIVGFSAKAMEATATGTLPRTFFDVHDMARGY-ANNAYP 242
Query: 249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV 308
YTP++ L+ GL A ++ +EGLENV RH R+ + R AV AWGL+ C + +SDTV
Sbjct: 243 YTPAVGLMNGLNQACRMLLDEGLENVFARHHRIAEGVRAAVHAWGLELCAASPDLYSDTV 302
Query: 309 TAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358
+A+ P N+++IV A +Y ++ G+GL +VAGKVFRIGHLG L +VM
Sbjct: 303 SAIRTPEGFNATDIVTHAASKYGVAFGVGLGEVAGKVFRIGHLGSLTDVM 352
|
|
| TIGR_CMR|CHY_2699 CHY_2699 "soluble hydrogenase, 42 kDa subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
Identities = 131/352 (37%), Positives = 204/352 (57%)
Query: 9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTT 68
K +L +PGP IP +V AM+R +RS L + ++ +K++FKT + F++ +
Sbjct: 3 KKYLMIPGPTPIPPEVTLAMSRPMIGHRSGDFAKLHERVVAKLKQVFKTQNDI-FILTNS 61
Query: 69 GTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLAS 128
GTG E A+ N ++PGD +++ G F + + VD+V+ WG L V+
Sbjct: 62 GTGGMEMAVANVVNPGDEVLALSTGNFGERFAKIAKEYGAKVDMVDFGWGNAVDLAVVEE 121
Query: 129 KLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMD 188
KL + + KA+ HNET+TGV N+++ + L +R A+ +VD VSS+ ++F D
Sbjct: 122 KLRQNPNY--KAVLATHNETSTGVKNDIAGIAALTKNHR--AVLIVDAVSSLGGMEFDTD 177
Query: 189 EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDW---KDYIKFYNLGT 245
WG+DV +TGSQKAL LP G+ + S KALEA++ K+ + +F K + +N
Sbjct: 178 GWGVDVVVTGSQKALMLPPGLAFISFSQKALEAAQDNKNPKFYFSLPAAKKALAEWNTA- 236
Query: 246 FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFS 305
YTP++ L +GL AALDLI EEGL+ VI+RH+ L KA R V+A GLK EE S
Sbjct: 237 ---YTPAVSLFFGLEAALDLILEEGLDKVIKRHKLLAKACREGVKALGLK-LFPAEENAS 292
Query: 306 DTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV 357
DTVTAV + ++ + +Y ++ G + GK+FRIGH+G+++++
Sbjct: 293 DTVTAVAGDDRYDPEQLRKVLRTKYGVTFAGGQKDLKGKIFRIGHMGYVDKL 344
|
|
| TIGR_CMR|SPO_3029 SPO_3029 "serine--glyoxylate transaminase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 133/372 (35%), Positives = 203/372 (54%)
Query: 6 APGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLI 65
A G+ +L +PGP +PD V+RAM+R + + + + L+ D++++ +T I
Sbjct: 8 AQGRGYLAIPGPSVMPDAVLRAMHRAAPNIYAGELVDMMPGLMADLRRVVRTAHHATIYI 67
Query: 66 PTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDV 125
G GAWE+AL+N ++PG+ ++ G+F+ W + + L V+ D+G+ A D+
Sbjct: 68 -CNGHGAWEAALSNVIAPGEVVLVPASGRFAHGWAEMAEGLGAECQVI--DFGKSAPWDM 124
Query: 126 --LASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI-CA 182
+A L ADTAH IKA+ VH +T++ + N+++ +R +LD HPAL + D ++S+ C
Sbjct: 125 DRIAEALKADTAHRIKAVLAVHVDTSSSIRNDIAGLRAVLDALGHPALLMADCIASLGCD 184
Query: 183 IDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYN 242
+ F MD WG+DV +T SQK L +P G+G V + +A A+K A RV W D++ N
Sbjct: 185 V-FEMDGWGVDVTVTASQKGLMVPPGVGFVFFNERA--AAKRASMPRVSRYW-DWVPRAN 240
Query: 243 LGTFWPY---TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG-----L 294
F+ Y T LYGLR ALD+I EG+E+V RH L +A A W +
Sbjct: 241 PTDFYQYFDGTAPTHHLYGLRTALDMIHAEGIEHVWARHAVLARAIWAACSVWAEGGDLV 300
Query: 295 KNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNL--SLGLGLNKVA-G-----KVF 346
N S VTA+ + S ++ R W NL +LG+GL A G K F
Sbjct: 301 LNVADPAHR-SHAVTALRLDSGKGTA---LRQWTETNLGLTLGIGLGMAAPGDPAYDKFF 356
Query: 347 RIGHLGHLNEVM 358
R+GH+GHLN M
Sbjct: 357 RLGHMGHLNGQM 368
|
|
| TIGR_CMR|DET_0600 DET_0600 "soluble hydrogenase, tritium exchange subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
Identities = 112/346 (32%), Positives = 192/346 (55%)
Query: 11 HLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGT 70
+L +PGP P++V+ AM + ++R P + A+ K + E +K F+T + ++ +GT
Sbjct: 3 NLRIPGPTPCPEEVLTAMGQQMINHRGPEMAAIMKEVAEKLKYFFQTKNDV-LVLTGSGT 61
Query: 71 GAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKL 130
G E+A N LSPG+ ++S IG F + + + + G+ A L K
Sbjct: 62 GGLEAAAVNFLSPGETVLSVSIGVFGERFAKIASIFGAKIIALNFEHGKAAD-PALVKKA 120
Query: 131 AADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW 190
A+ IKA+ I HNET+TG+TN+L + ++ L +VD +SS+ +ID +DEW
Sbjct: 121 LAEHPE-IKAVLITHNETSTGITNDLKSLASVVKGAGK--LLMVDAISSLSSIDLPVDEW 177
Query: 191 GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT 250
G DV ++GSQK +P G+ + SP A +A+ +K R ++D + G P+T
Sbjct: 178 GCDVVVSGSQKGWMVPPGLAFISVSPDAWKANAESKMPRFYWDLAKHKASIEKGQT-PWT 236
Query: 251 PSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTA 310
P + ++ L AL ++ +EG++N+ +RH+++ TR V+ GL +E++ S+TVTA
Sbjct: 237 PCVSVIVALHKALAMMEKEGMQNIFKRHQKIADFTRKGVKELGL-TLLAEEKYASNTVTA 295
Query: 311 VIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNE 356
V+ ++ ++++ + YN L G + GK+FRIGHLG + E
Sbjct: 296 VLATEGLDPKKLLKVMREEYNTVLAGGQGPLEGKIFRIGHLGWVTE 341
|
|
| TIGR_CMR|GSU_3260 GSU_3260 "phosphoserine aminotransferase, putative" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 105/344 (30%), Positives = 173/344 (50%)
Query: 12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
LF+PGPV + ++++AM +R P AL + +K++ T G FL ++ G
Sbjct: 5 LFIPGPVDVHPEILQAMASPMIGHRMPEYAALHGRVTAGLKRVL-ATDGRVFLATSSAFG 63
Query: 72 AWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA 131
E A+ N ++ R ++F G FS W D +R D V+ +WG+ +++ LA
Sbjct: 64 VMEGAVRNLVAK--RCVNFCNGAFSDKWHDVTKRCGKEADAVKVEWGKPITPEIVDQALA 121
Query: 132 ADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWG 191
AI ++HNET+TGV + L ++ ++L Y + ++D VSS+ A+ +DE G
Sbjct: 122 TGK---YDAITLIHNETSTGVMSPLPEIARVLRNYPD-VVSIIDTVSSMSALPVPVDELG 177
Query: 192 IDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTP 251
ID + G QKA +LP G+ + AS KAL ++T + +FD+ ++ + + P TP
Sbjct: 178 IDCCIFGVQKAFALPPGLAVFTASDKALARARTVEGRGYYFDFLEF-EANDEKNNTPSTP 236
Query: 252 SIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAV 311
I +Y + L+ F EGLE RHR+L R V G E + S T+T
Sbjct: 237 CISHIYAMDRQLERFFAEGLEQRWARHRQLAGMVREWVTDRGF-GFFADEPYRSVTLTCA 295
Query: 312 IVPSHINSSEIVRRAWQR-YNLSLGLGLNKVAGKVFRIGHLGHL 354
+ + + + + +R Y G G K+ GK FR+ H+G +
Sbjct: 296 LNTRDTDLARLKKMLGERGYAFDDGYG--KIKGKTFRVAHMGDM 337
|
|
| UNIPROTKB|Q8E9E1 agxT "Serine-pyruvate aminotransferase AgxT" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 99/353 (28%), Positives = 171/353 (48%)
Query: 5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFL 64
+ P + L PGP + +V+ A R + P ++ L I+ F+T +
Sbjct: 10 FNPPRRILMGPGPSDVYPEVLAAQARPTVGHLDPLFVSMMDELKSLIQYAFQTKNEMTMA 69
Query: 65 IPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLD 124
+ G+ E+ N + PG+++I G F +R+ +V+++WG +D
Sbjct: 70 VSAPGSAGMETCFVNLVEPGEKVIVCRNGVFGERMRQNVERVGAIAVLVDNEWG--TPVD 127
Query: 125 VLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID 184
+A + A K + VH ET+TG ++ + L +Y L +VD V+S+ ++
Sbjct: 128 PVAVEAALKAHPDAKFLAFVHAETSTGALSDAKTLCALAKQYG--CLSIVDAVTSLGGVE 185
Query: 185 FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS-VRVFFDWKDYIKFY-- 241
R+DEWGID +GSQK LS G+ V SP A+E K K+ V+ +F + + Y
Sbjct: 186 LRVDEWGIDAIYSGSQKCLSCVPGLSPVSFSPAAVEKLKNRKTPVQSWFLDQSLVMAYWT 245
Query: 242 NLG--TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQ 299
+ G + +T + LY + +L ++ EGLEN +RH+ + R +E GLK
Sbjct: 246 SAGGKRSYHHTAPVNALYAMHESLRILAAEGLENAWKRHQDMHLVLRAGLEKLGLKFVVA 305
Query: 300 KEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352
+ + A+ +P ++ + + R + YNL +G GL +AGK +RIG +G
Sbjct: 306 EASRLPQ-LNAIYIPEGVDDAAVRARLLKDYNLEIGAGLGALAGKAWRIGLMG 357
|
|
| TIGR_CMR|SO_4343 SO_4343 "aminotransferase, class V" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 99/353 (28%), Positives = 171/353 (48%)
Query: 5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFL 64
+ P + L PGP + +V+ A R + P ++ L I+ F+T +
Sbjct: 10 FNPPRRILMGPGPSDVYPEVLAAQARPTVGHLDPLFVSMMDELKSLIQYAFQTKNEMTMA 69
Query: 65 IPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLD 124
+ G+ E+ N + PG+++I G F +R+ +V+++WG +D
Sbjct: 70 VSAPGSAGMETCFVNLVEPGEKVIVCRNGVFGERMRQNVERVGAIAVLVDNEWG--TPVD 127
Query: 125 VLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID 184
+A + A K + VH ET+TG ++ + L +Y L +VD V+S+ ++
Sbjct: 128 PVAVEAALKAHPDAKFLAFVHAETSTGALSDAKTLCALAKQYG--CLSIVDAVTSLGGVE 185
Query: 185 FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS-VRVFFDWKDYIKFY-- 241
R+DEWGID +GSQK LS G+ V SP A+E K K+ V+ +F + + Y
Sbjct: 186 LRVDEWGIDAIYSGSQKCLSCVPGLSPVSFSPAAVEKLKNRKTPVQSWFLDQSLVMAYWT 245
Query: 242 NLG--TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQ 299
+ G + +T + LY + +L ++ EGLEN +RH+ + R +E GLK
Sbjct: 246 SAGGKRSYHHTAPVNALYAMHESLRILAAEGLENAWKRHQDMHLVLRAGLEKLGLKFVVA 305
Query: 300 KEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352
+ + A+ +P ++ + + R + YNL +G GL +AGK +RIG +G
Sbjct: 306 EASRLPQ-LNAIYIPEGVDDAAVRARLLKDYNLEIGAGLGALAGKAWRIGLMG 357
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| FB|FBgn0014031 Spat "Serine pyruvate aminotransferase" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 107/355 (30%), Positives = 170/355 (47%)
Query: 4 MYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPF 63
+Y P K L PGP + +V+ AM+ + P + + E IK IF+T +
Sbjct: 13 LYVPSKT-LMGPGPSNCSHRVLEAMSNPVLGHMHPECLQIMDEVKEGIKYIFQTLNDATM 71
Query: 64 LIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKL 123
I G E+AL N + GD ++ + G + D +R V VE+ +G
Sbjct: 72 CISGAGHSGMEAALCNLIEDGDVVLMGITGVWGHRAGDMARRYGAEVHYVEASFGRALSH 131
Query: 124 DVLASKLAADTAHTIKAICIVHNETATGVTN-NLSKVRKLLDEYRHPALFLVDGVSSICA 182
+ + A AH K I +++TG+ N+ ++ +L +Y +VD V+S+
Sbjct: 132 EEITF---AFEAHRPKVFFIAQGDSSTGIIQQNIRELGELCRKY--DCFLIVDTVASLGG 186
Query: 183 IDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV-RVF-FDWK---DY 237
+F MDEW +DVA TGSQK+L P G+ + S +AL + K+ +V+ FD Y
Sbjct: 187 TEFLMDEWKVDVAYTGSQKSLGGPAGLTPISFSKRALTRIRKRKTKPKVYYFDILLIGQY 246
Query: 238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNC 297
Y + +T S LLYGLR AL GL+ V+ RH+ K +L +E GL+
Sbjct: 247 WGCYGTPRIYHHTISSTLLYGLREALAHFCAVGLKAVVRRHQECSKRLQLGIEELGLEMF 306
Query: 298 TQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352
+EE TV + VP ++ ++ A ++Y++ + GL VFRIG +G
Sbjct: 307 VSREEERLPTVNTIKVPFGVDWKKVAEYAMRKYSVEISGGLGPTVEHVFRIGLMG 361
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| UNIPROTKB|Q9KUW7 VC_0392 "Aminotransferase, class V" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 98/353 (27%), Positives = 170/353 (48%)
Query: 5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFL 64
+ P L PGP I QV++A++R + P + L + +K F+T +
Sbjct: 6 FIPPHRILMGPGPSAISPQVLQALSRPTVGHLDPLFIGMMDELKQLLKYAFQTENEFTIA 65
Query: 65 IPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLD 124
+ G+ E+ N + PGD++I G F D R V VV+ +WG ++
Sbjct: 66 VSAPGSAGMEACFVNLVEPGDKVIVCRNGVFGERMRDNAVRCGAEVVVVDDEWGCPVSVE 125
Query: 125 VLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID 184
+ + + D K + V ET+TG ++ + L + H L +VD V+S+ +
Sbjct: 126 KVQATI--DEHPDAKILAFVQAETSTGALSDAQALGALAKQ--HGLLTIVDAVTSLGGVP 181
Query: 185 FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS-VRVFFDWKDYIKFYNL 243
+DEW +D +GSQK LS G+ + SP+A+E ++ K+ ++ +F + + Y
Sbjct: 182 LLVDEWQLDAVYSGSQKCLSCVPGLAPLTFSPRAIEKIQSRKTPIQSWFLDQSLVLGYWS 241
Query: 244 GT---FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
G + +T + LY L AL L+ +EGLE+ +RHR + + + +E G +
Sbjct: 242 GAGKRSYHHTAPVNSLYALHEALLLLQQEGLEHAWQRHRLMHEKLKQGLEQLGFQFVVA- 300
Query: 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH 353
E + + A+ VP I +++ YNL +G GL +AGK +RIG +G+
Sbjct: 301 EPYRLPQLNAIYVPEGIEEAKVRSHLLNEYNLEIGAGLGALAGKAWRIGVMGY 353
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O08374 | SGAA_HYPME | 2, ., 6, ., 1, ., 4, 5 | 0.5365 | 0.9618 | 0.8716 | N/A | no |
| Q5RDP0 | SPYA_PONAB | 2, ., 6, ., 1, ., 4, 4 | 0.3019 | 0.9073 | 0.8494 | yes | no |
| P55819 | SGAA_METEA | 2, ., 6, ., 1, ., 4, 5 | 0.5589 | 0.9536 | 0.8706 | yes | no |
| P21549 | SPYA_HUMAN | 2, ., 6, ., 1, ., 4, 4 | 0.3057 | 0.9046 | 0.8469 | yes | no |
| Q58369 | Y959_METJA | 2, ., 6, ., 1, ., - | 0.3581 | 0.9318 | 0.8883 | yes | no |
| Q56YA5 | SGAT_ARATH | 2, ., 6, ., 1, ., 5, 1 | 0.8607 | 0.9782 | 0.8952 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.6.1 | 0.983 |
| 4th Layer | 2.6.1.44 | 0.979 |
| 4th Layer | 2.6.1.51 | 0.979 |
| 4th Layer | 2.6.1.45 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_Genewise1_v1.C_LG_IX3694 | serine--glyoxylate transaminase (EC-2.6.1.45) (401 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | eugene3.00010922 | SubName- Full=Putative uncharacterized protein; (335 aa) | • | • | 0.917 | ||||||
 | SHMT6 | RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (472 aa) | • | • | 0.917 | ||||||
 | SHMT1 | RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (472 aa) | • | • | 0.917 | ||||||
 | SHMT8 | serine hydroxymethyltransferase 8 (EC-2.1.2.1); Interconversion of serine and glycine (By simil [...] (530 aa) | • | • | 0.915 | ||||||
 | SHMT3 | precursor of transferase serine hydroxymethyltransferase 3 (EC-2.1.2.1); Interconversion of ser [...] (516 aa) | • | • | 0.914 | ||||||
 | SHMT2 | precursor of transferase serine hydroxymethyltransferase 2 (EC-2.1.2.1); Interconversion of ser [...] (518 aa) | • | • | 0.913 | ||||||
 | SHMT7 | precursor of transferase serine hydroxymethyltransferase 7 (EC-2.1.2.1); Interconversion of ser [...] (521 aa) | • | • | 0.913 | ||||||
 | SHMT5 | serine hydroxymethyltransferase 5 (EC-2.1.2.1); Interconversion of serine and glycine (By simil [...] (552 aa) | • | • | 0.910 | ||||||
 | SHMT4 | serine hydroxymethyltransferase 4 (EC-2.1.2.1); Interconversion of serine and glycine (By simil [...] (555 aa) | • | • | 0.910 | ||||||
 | estExt_fgenesh4_pg.C_280257 | threonine deaminase (EC-4.3.1.19) (543 aa) | • | • | 0.908 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 367 | |||
| PLN02409 | 401 | PLN02409, PLN02409, serine--glyoxylate aminotransa | 0.0 | |
| cd06451 | 356 | cd06451, AGAT_like, Alanine-glyoxylate aminotransf | 1e-166 | |
| COG0075 | 383 | COG0075, COG0075, Serine-pyruvate aminotransferase | 1e-130 | |
| TIGR03301 | 355 | TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate amin | 4e-31 | |
| pfam00266 | 370 | pfam00266, Aminotran_5, Aminotransferase class-V | 7e-26 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 2e-17 | |
| TIGR02326 | 363 | TIGR02326, transamin_PhnW, 2-aminoethylphosphonate | 3e-15 | |
| PRK13479 | 368 | PRK13479, PRK13479, 2-aminoethylphosphonate--pyruv | 4e-13 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 1e-09 | |
| TIGR01979 | 403 | TIGR01979, sufS, cysteine desulfurases, SufSfamily | 7e-08 | |
| cd06453 | 373 | cd06453, SufS_like, Cysteine desulfurase (SufS)-li | 4e-07 | |
| TIGR01977 | 376 | TIGR01977, am_tr_V_EF2568, cysteine desulfurase fa | 1e-06 | |
| PRK03080 | 378 | PRK03080, PRK03080, phosphoserine aminotransferase | 1e-05 | |
| COG1932 | 365 | COG1932, SerC, Phosphoserine aminotransferase [Coe | 2e-05 |
| >gnl|CDD|178031 PLN02409, PLN02409, serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Score = 705 bits (1821), Expect = 0.0
Identities = 289/358 (80%), Positives = 326/358 (91%)
Query: 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
MDY+YAPG+NHLFVPGPV+IP++V+RAMNR NED+RSPA PALTK LLED+K IFKT SG
Sbjct: 1 MDYVYAPGRNHLFVPGPVNIPERVLRAMNRPNEDHRSPAFPALTKELLEDVKYIFKTKSG 60
Query: 61 TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
TPF+ PTTGTGAWESALTNTLSPGD+++SF IGQFSLLWIDQ QRLNF+VDVVES WG+G
Sbjct: 61 TPFIFPTTGTGAWESALTNTLSPGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVESPWGQG 120
Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
A LD+L SKL DT H IKA+C+VHNET+TGVTN+L+ VRKLLD +HPAL LVDGVSSI
Sbjct: 121 ADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSI 180
Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240
A+DFRMDEWG+DVALTGSQKALSLPTG+GIVCASPKALEASKTAKS RVFFDW DY+KF
Sbjct: 181 GALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWADYLKF 240
Query: 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
Y LGT+WPYTPSIQLLYGLRAALDLIFEEGLENVI RH RLG+ATRLAVEAWGLK CT+K
Sbjct: 241 YKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAWGLKLCTKK 300
Query: 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358
EW SDTVTAV+VP I+S+EIV+ AW++YNLSLGLGLNKVAGKVFRIGHLG++NE+
Sbjct: 301 PEWRSDTVTAVVVPEGIDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQ 358
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Length = 401 |
| >gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Score = 467 bits (1203), Expect = e-166
Identities = 163/362 (45%), Positives = 218/362 (60%), Gaps = 12/362 (3%)
Query: 11 HLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGT 70
L +PGP ++P +V++AMNR +RSP AL +LE ++ +F+T +G FL+ +GT
Sbjct: 1 LLLIPGPSNVPPRVLKAMNRPMLGHRSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGT 60
Query: 71 GAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKL 130
GA E+AL+N L PGD+++ + G F W D +R +VDVVE WGE + +A L
Sbjct: 61 GAMEAALSNLLEPGDKVLVGVNGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEAL 120
Query: 131 AADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW 190
H IKA+ + HNET+TGV N L + L +H AL +VD VSS+ FRMDEW
Sbjct: 121 E---QHDIKAVTLTHNETSTGVLNPLEGIGALA--KKHDALLIVDAVSSLGGEPFRMDEW 175
Query: 191 GIDVALTGSQKALSLPTGMGIVCASPKALEASKTA-KSVRVFFDWKDYIKFYNLGTFWPY 249
G+DVA TGSQKAL P G+G + S +ALE K K +FD +K++ G +P+
Sbjct: 176 GVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPH 235
Query: 250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVT 309
TP + LLY LR ALDLI EEGLEN RHRRL KA R +EA GLK K E S TVT
Sbjct: 236 TPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEALGLKLLA-KPELRSPTVT 294
Query: 310 AVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNE-----VMFNFQLL 364
AV+VP ++ E+VRR +RYN+ + GL AGKVFRIGH+G V+ +
Sbjct: 295 AVLVPEGVDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEA 354
Query: 365 FQ 366
+
Sbjct: 355 LK 356
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This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. Length = 356 |
| >gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 377 bits (971), Expect = e-130
Identities = 139/345 (40%), Positives = 202/345 (58%), Gaps = 5/345 (1%)
Query: 11 HLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGT 70
L PGPV +P +V+ AM R +RSP + K +LE ++K+F T +G L+ +GT
Sbjct: 7 LLLTPGPVPVPPRVLLAMARPMVGHRSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGT 66
Query: 71 GAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKL 130
A E+A+ + + PGD+++ + G+F + + +R V V+E +WGE + + L
Sbjct: 67 LAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEAL 126
Query: 131 AADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW 190
D IKA+ +VHNET+TGV N L ++ K E H AL +VD VSS+ ++DEW
Sbjct: 127 DKD--PDIKAVAVVHNETSTGVLNPLKEIAKAAKE--HGALLIVDAVSSLGGEPLKVDEW 182
Query: 191 GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT 250
GIDVA+TGSQKAL P G+ V S +ALEA + K + D K ++K+ PYT
Sbjct: 183 GIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYT 242
Query: 251 PSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTA 310
P + L+Y LR ALDLI EEGLE I RHRRL +A R +EA GL+ E S TVTA
Sbjct: 243 PPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALGLELFAD-PERRSPTVTA 301
Query: 311 VIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLN 355
+ VP ++ ++ R + Y + + G + GK+FRIGH+G++
Sbjct: 302 IKVPEGVDDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVR 346
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Length = 383 |
| >gnl|CDD|213793 TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 4e-31
Identities = 89/357 (24%), Positives = 143/357 (40%), Gaps = 33/357 (9%)
Query: 12 LFVPGPVHIPDQVIRAM----NRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLIP 66
L PGP+ V AM + ++ +T + + + + T L+
Sbjct: 2 LLTPGPLSTSATVRDAMLVDWCHWDSEFND-----VTDQVRDRLLALAGGDDNHTCVLLQ 56
Query: 67 TTGTGAWESALTNTLSPGDRIISFLI-GQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDV 125
+GT A E+ + +L P D + LI G + + L + E L+
Sbjct: 57 GSGTFAVEATI-GSLVPRDGKLLVLINGAYGERLAKICEYLGIPHTDLNFSEYEPPDLNR 115
Query: 126 LASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF 185
+ LAAD I + VH+ET TG+ N L + K+ H A+ +VD +SS AI
Sbjct: 116 IEEALAADPD--ITHVATVHHETTTGILNPLEAIAKVAR--SHGAVLIVDAMSSFGAIPI 171
Query: 186 RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASK-TAKSVRVFFDWKDYIKFYNLG 244
++E +D + + K L G G V A LEAS A+S ++ D D +
Sbjct: 172 DIEELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARS--LYLDLYDQWAYMEKT 229
Query: 245 TFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEW 303
W +TP +Y AL+ + EG + I R+RR + + A G + E W
Sbjct: 230 GKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALGFQPLL-PERW 288
Query: 304 FSDTVTAVIVPSHIN------SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHL 354
S + + + P + E+ R + Y L L FRIG +G +
Sbjct: 289 QSPIIVSFLYPDDPDFDFDDFYQELKERGFVIYPGKLTL------ADTFRIGTIGEI 339
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level TIGR02326. The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. Length = 355 |
| >gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 7e-26
Identities = 70/303 (23%), Positives = 109/303 (35%), Gaps = 29/303 (9%)
Query: 12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPAL------TKTLLEDIKKIFKTTSGTPF-- 63
L P V+ A+ DY + E+ ++ P
Sbjct: 3 LDSAATTQKPQAVLDALQEYYTDYNGNVHRGVHHLGKEATQAYEEAREKVAEFINAPSDE 62
Query: 64 -LIPTTGTGAWES------ALTNTLSPGDRIISFLIGQFS--LLWIDQQQRLNFNVDVVE 114
+I T+GT E+ +L +L PGD I+ + + + W + +R V V+
Sbjct: 63 EIIFTSGTT--EAINLVAISLGRSLKPGDEILVTEMEHHANLVPWQELAKRTGATVRVIP 120
Query: 115 SDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLV 174
D LD L L T K + I H TG N + ++ KL EY AL +V
Sbjct: 121 VDPNGLLDLDALEKLLTPRT----KLVAITHVSNVTGTVNPVEEIGKLAHEYG--ALVVV 174
Query: 175 DGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAK--SVRVFF 232
D ++ + G+D K PTG+G++ LE +
Sbjct: 175 DAAQAVGHRPIDVQALGVDFLAFSGHKLYG-PTGIGVLYGRRDLLEKLPPLLGGGGMIDT 233
Query: 233 DWKDYIKFYNLGT-FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA 291
F + + F TP+I + GL AALD + E GLE + + R L + A
Sbjct: 234 VSLQETTFADAPSKFEAGTPNIAGIIGLGAALDYLAEIGLEAIEKHERELAAYLYERLLA 293
Query: 292 WGL 294
Sbjct: 294 IPG 296
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This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 2e-17
Identities = 60/272 (22%), Positives = 101/272 (37%), Gaps = 33/272 (12%)
Query: 75 SALTNTLSPGDRIISFLI--GQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA 132
L +L PGD I+ + + W + +R V V+ D LD L +
Sbjct: 102 RGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITP 161
Query: 133 DTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGI 192
T K + + H TG N + ++ +L + H AL LVD + + + E G
Sbjct: 162 KT----KLVALSHVSNVTGTVNPVKEIAELA--HEHGALVLVDAAQAAGHLPIDVQELGC 215
Query: 193 DVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLG-----TFW 247
D K L PTG+G++ + LE + F I++ +
Sbjct: 216 DFLAFSGHKWLLGPTGIGVLYVRKELLEELEP------FLGGGGMIEYVSRDEGVTLAEL 269
Query: 248 PY-----TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCT 298
P TP+I GL AALD + E G+E + R L T +E G++
Sbjct: 270 PLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHEREL---TEYLLEGLSELPGVEIYG 326
Query: 299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRY 330
+ V+ + I+ ++ ++
Sbjct: 327 PPDADRGGIVSFNV--KGIHPHDVATLLDEKG 356
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Length = 405 |
| >gnl|CDD|131379 TIGR02326, transamin_PhnW, 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 3e-15
Identities = 90/369 (24%), Positives = 158/369 (42%), Gaps = 44/369 (11%)
Query: 9 KNH--LFVPGPVHIPDQVIRAMNRN----NEDYRSPAVPALTKTLLEDIKKIFKTTSG-T 61
+ + L PGP+ V AM + + DY + + + + + + G T
Sbjct: 1 ERNYLLLTPGPLTTSRTVKEAMLFDWCTWDSDYNI-----VVEQIRQQLLALATAEEGYT 55
Query: 62 PFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGA 121
L+ +GT A E+ + + + +++ + G + + + L + D GE
Sbjct: 56 SVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAEYLG--IPHHVVDTGEVE 113
Query: 122 KLDVLA--SKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSS 179
DV+ + LAAD A I I +VH ET TG+ N + V KL +RH + +VD +SS
Sbjct: 114 PPDVVEVEAILAADPA--ITHIALVHCETTTGILNPIEAVAKLA--HRHGKVTIVDAMSS 169
Query: 180 ICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASK-TAKSVRV-FFDWKDY 237
I + E ID ++ + K + G G V A L A K A+S+ + +D
Sbjct: 170 FGGIPIDIAELHIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQWRC 229
Query: 238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAV---EAWGL 294
++ N G W +T +++ AL + +EG V RH+R + + V A G
Sbjct: 230 ME-DNHGK-WRFTSPTHVVHAFAQALLELEKEG--GVAARHQRYQQNQKTLVAGMRALGF 285
Query: 295 KNCTQKEEWFSDTVTAVIVPSHINS--SEIVRRAWQRYNLSLGLGLNKVAGKV-----FR 347
+ +E S +T+ P + ++ +R ++ G GKV FR
Sbjct: 286 EPLLD-DEIQSPIITSFYSPEDPDYRFADFYQRLKEQ-------GFVIYPGKVSQVDCFR 337
Query: 348 IGHLGHLNE 356
IG++G ++
Sbjct: 338 IGNIGEVDA 346
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli [Central intermediary metabolism, Phosphorus compounds]. Length = 363 |
| >gnl|CDD|184076 PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 4e-13
Identities = 75/289 (25%), Positives = 117/289 (40%), Gaps = 47/289 (16%)
Query: 12 LFVPGPVHIPDQVIRAMNRN----NEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPT 67
L PGP+ V AM R+ ++D+ ALT ++ + I T +P
Sbjct: 8 LLTPGPLTTSRTVREAMLRDWGSWDDDFN-----ALTASVRAKLVAI-ATGEEGYTCVPL 61
Query: 68 TGTG--AWESALTNTLSP-------------GDRIISFLIGQFSLLWIDQQQRLNFNVDV 112
G+G + E+A+ +L P G RI + L V
Sbjct: 62 QGSGTFSVEAAI-GSLVPRDGKVLVPDNGAYGARIAQIA------------EYLGIAHVV 108
Query: 113 VESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALF 172
+++ E + + LAAD I + +VH ET TG+ N L ++ + RH
Sbjct: 109 LDTGEDEPPDAAEVEAALAADPR--ITHVALVHCETTTGILNPLDEIAAVA--KRHGKRL 164
Query: 173 LVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASK-TAKSVRVF 231
+VD +SS AI + E GID ++ + K + G G V A LEA K ++S+ +
Sbjct: 165 IVDAMSSFGAIPIDIAELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSL- 223
Query: 232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRR 280
D D + W +TP ++ AL + EEG V R R
Sbjct: 224 -DLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEG--GVPARGAR 269
|
Length = 368 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-09
Identities = 46/148 (31%), Positives = 58/148 (39%), Gaps = 8/148 (5%)
Query: 69 GTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLAS 128
GTGA E+AL L PGD +I G S W+ + V D LDV
Sbjct: 26 GTGANEAALLALLGPGDEVIVDANGHGSRYWV-AAELAGAKPVPVPVDDAGYGGLDVAI- 83
Query: 129 KLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF--- 185
+ I I N T+ GV L ++RK+ EY L LVD S+ A
Sbjct: 84 LEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYG--ILLLVDAASAGGASPAPGV 141
Query: 186 RMDEWGIDVALTGSQKALSLPTGMGIVC 213
+ E G DV K L G G+V
Sbjct: 142 LIPEGGADVVTFSLHKNLGGE-GGGVVI 168
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 7e-08
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 18/152 (11%)
Query: 139 KAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198
K + I H G N + ++ KL + A LVDG ++ + + D +
Sbjct: 161 KLVAITHVSNVLGTVNPVEEIAKLAHQVG--AKVLVDGAQAVPHMPVDVQALDCDFYVFS 218
Query: 199 SQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL-GTFW---PY----- 249
K PTG+G++ + LE + F + I + T + P+
Sbjct: 219 GHKMYG-PTGIGVLYGKEELLE------QMPPFLGGGEMIAEVSFEETTYNEAPHKFEAG 271
Query: 250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRL 281
TP+I + GL AA+D + GLEN+ L
Sbjct: 272 TPNIAGVIGLGAAIDYLEAIGLENIEAHEHEL 303
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403 |
| >gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 4e-07
Identities = 54/213 (25%), Positives = 86/213 (40%), Gaps = 21/213 (9%)
Query: 75 SALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGA-KLDVLASKLA 131
L PGD I++ ++ S + W +R + VV D +G L+ L L
Sbjct: 79 YGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVD-DDGQLDLEALEKLLT 137
Query: 132 ADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWG 191
T K + + H G N + ++ ++ E LVDG S + + + G
Sbjct: 138 ERT----KLVAVTHVSNVLGTINPVKEIGEIAHE--AGVPVLVDGAQSAGHMPVDVQDLG 191
Query: 192 ID-VALTGSQKALSLPTGMGIVCASPKALEASK-----TAKSVRVFFDWKDYIKFYNLGT 245
D +A +G K L PTG+G++ + LE V F+ Y +
Sbjct: 192 CDFLAFSG-HKML-GPTGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPH--K 247
Query: 246 FWPYTPSIQLLYGLRAALDLIFEEGLENVIERH 278
F TP+I GL AA+D + + G+E I H
Sbjct: 248 FEAGTPNIAGAIGLGAAIDYLEKIGMEA-IAAH 279
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373 |
| >gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 57/282 (20%), Positives = 104/282 (36%), Gaps = 37/282 (13%)
Query: 21 PDQVIRAMNRNNEDY-----RSPAVPALTKTLL-----EDIKKIFKTTSGTPFLIPTTGT 70
PD+V AM ++Y R AL + + + K+F S + T
Sbjct: 13 PDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNAT 72
Query: 71 GAWESALTNTLSPGDRIISFLIGQFSLLWIDQQ--QRLNFNVDVVESDWGEGAKLDV--L 126
A AL L GD +I+ + S+ + +++ + +V+ D + +
Sbjct: 73 TALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCD--NEGLISPERI 130
Query: 127 ASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR 186
+ +T K I + H TG + ++ +L E + F++D + I
Sbjct: 131 KRAIKTNT----KLIVVSHASNVTGTILPIEEIGELAQE--NGIFFILDAAQTAGVIPID 184
Query: 187 MDEWGID-VALTGSQKALSLPTGM-GIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLG 244
M E ID +A TG K L P G G+ L+ K+ + +
Sbjct: 185 MTELAIDMLAFTG-HKGLLGPQGTGGLYIREGIKLKPLKSGGTGSHSALI-------DQP 236
Query: 245 TFWPY-----TPSIQLLYGLRAALDLIFEEGLENVIERHRRL 281
+ P T + + GL A + I + G+ N+ ++ L
Sbjct: 237 SELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECML 278
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown [Unknown function, Enzymes of unknown specificity]. Length = 376 |
| >gnl|CDD|235103 PRK03080, PRK03080, phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 1e-05
Identities = 53/190 (27%), Positives = 79/190 (41%), Gaps = 23/190 (12%)
Query: 36 RSPAVPALTKTLLEDIKKIFKTTSGTPFLI-PTTGTGAWESALTNTLSPGDRIISFLI-G 93
R V AL K ++E +++ G I P + TGAWE AL + L G R + L
Sbjct: 42 RQKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLL--GARRVDHLAWE 99
Query: 94 QFSLLW---IDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETAT 150
F W + +Q +L + V+E+D+G L A D + N T T
Sbjct: 100 SFGSKWATDVVKQLKLE-DPRVLEADYGSLPDLS------AVDFDRDV---VFTWNGTTT 149
Query: 151 GVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMG 210
GV V + + R L + D S+ A+ + +DV QK L G G
Sbjct: 150 GVR---VPVARWIGADRE-GLTICDATSAAFALPLDWSK--LDVYTFSWQKVLGGEGGHG 203
Query: 211 IVCASPKALE 220
+ SP+A+E
Sbjct: 204 MAILSPRAVE 213
|
Length = 378 |
| >gnl|CDD|224843 COG1932, SerC, Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 56/261 (21%), Positives = 100/261 (38%), Gaps = 34/261 (13%)
Query: 36 RSPAVPALTKTLLEDIKKIFKTTSGTPFLI-PTTGTGAWESALTNTLSPG--DRIISFLI 92
RS + + +D++++ L TG + A N L D + +
Sbjct: 44 RSKEFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNLLGKRGTDYVDTGAW 103
Query: 93 GQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152
+F++ + + +D + G G+ D+ + + A+ + NET +GV
Sbjct: 104 SEFAIKEAKKVGKQPKLIDARIEEAGYGSIPDLSKWDFSDNDAY----VHFCWNETISGV 159
Query: 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICA--IDFRMDEWGIDVALTGSQKALSLPTGMG 210
+V +L + L + D S+I + ID DV G+QK L P G+
Sbjct: 160 -----EVPEL-PDIGSDGLLVADASSAILSRPIDVS----KYDVIYAGAQKNLG-PAGLT 208
Query: 211 IVCASPKALEASKTAKSVRVFFDWKDYIK---FYNLGTFWPYTPSIQLLYGLRAALDLIF 267
+V P LE +++ + FD+ + YN TP Y L +
Sbjct: 209 VVIVRPDLLERAESYTLPSI-FDYLTHADNGSMYN-------TPPTFAWYLLGLVFKWLK 260
Query: 268 EE-GLENVIERHRRLGKATRL 287
+ GLE + R++ KA L
Sbjct: 261 SQGGLEALEARNQA--KAQLL 279
|
Length = 365 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 367 | |||
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 100.0 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 100.0 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 100.0 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 100.0 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 100.0 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 100.0 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 100.0 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 100.0 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 100.0 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 100.0 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 100.0 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 100.0 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 100.0 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 100.0 | |
| PLN02651 | 364 | cysteine desulfurase | 100.0 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 100.0 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 100.0 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 100.0 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 100.0 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 100.0 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 100.0 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 100.0 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 100.0 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 100.0 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 100.0 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 100.0 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 100.0 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 100.0 | |
| PLN02452 | 365 | phosphoserine transaminase | 100.0 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 100.0 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 100.0 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 100.0 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 100.0 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 100.0 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 100.0 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 100.0 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 100.0 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 100.0 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 100.0 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 100.0 | |
| PRK08068 | 389 | transaminase; Reviewed | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 100.0 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.98 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.98 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.98 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.98 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.98 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.98 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.98 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.98 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.98 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.98 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.98 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.97 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.97 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.97 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.97 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.97 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.97 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.97 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.97 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.97 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.97 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.97 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.97 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.97 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.97 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.97 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.97 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.97 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.97 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.97 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.97 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.97 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.97 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.97 | |
| PLN02187 | 462 | rooty/superroot1 | 99.97 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.97 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.97 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.97 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.97 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.97 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.97 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.97 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.97 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.97 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.97 | |
| PLN02656 | 409 | tyrosine transaminase | 99.97 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.97 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.97 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.97 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.97 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.97 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.97 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.97 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.97 | |
| PLN02231 | 534 | alanine transaminase | 99.97 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.97 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.96 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.96 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.96 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.96 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.96 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.96 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.96 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.96 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.96 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.96 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.96 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.96 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.96 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.96 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.96 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.96 | |
| PLN02721 | 353 | threonine aldolase | 99.96 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.96 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.96 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.96 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.96 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.96 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.96 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.95 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.95 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.95 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.95 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.95 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.95 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.95 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.95 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.95 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.95 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.95 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.95 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.95 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.95 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.95 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.95 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.95 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.94 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.94 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.94 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.94 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.94 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.94 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.94 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.94 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.94 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.94 | |
| PLN02368 | 407 | alanine transaminase | 99.94 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.94 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.94 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.94 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.94 | |
| PLN02263 | 470 | serine decarboxylase | 99.94 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.94 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.94 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.94 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.94 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.94 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 99.94 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.94 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.94 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.94 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.94 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.94 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.94 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.94 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.94 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.94 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.93 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.93 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.93 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.93 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.93 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.93 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.93 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.93 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.93 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.93 | |
| PLN02397 | 423 | aspartate transaminase | 99.93 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.93 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.93 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.93 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.93 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.92 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.92 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.92 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.92 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.92 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.92 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.92 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.92 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.92 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.92 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.92 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.92 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.92 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.92 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.92 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.92 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.92 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.91 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.91 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.91 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.91 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.91 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.91 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.91 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.91 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.91 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.9 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.9 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.9 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.9 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.9 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.9 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.9 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.9 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.9 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.9 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.9 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.89 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.89 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.89 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.89 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.89 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.88 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.88 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.88 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.88 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.87 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.87 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.87 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.87 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.87 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.87 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.86 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.86 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.86 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.86 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.85 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.85 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.85 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.84 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.83 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.82 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.82 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.82 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.82 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 99.81 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.81 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.81 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.8 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.8 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.8 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.8 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.79 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.79 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.79 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.79 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.77 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.77 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.77 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.76 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.75 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.74 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.74 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.74 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.74 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.74 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.73 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.73 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 99.73 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.72 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 99.71 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.71 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 99.71 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.71 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.71 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.71 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.7 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.7 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.7 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.7 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.7 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 99.7 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.69 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 99.69 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.69 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.69 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.69 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.69 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.68 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.68 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.67 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.67 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.67 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.67 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.67 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.66 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.66 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.65 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.65 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.65 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.65 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.65 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.64 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.63 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.63 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.63 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.63 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.63 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.62 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 99.62 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.62 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.61 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.61 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.61 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.61 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.6 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.6 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.6 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.6 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.6 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 99.6 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.59 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.59 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.59 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.59 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.58 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.57 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.57 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.56 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.56 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.56 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.55 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.53 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.53 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.51 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.51 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.5 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.47 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.47 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.46 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.45 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.44 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.42 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 99.4 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.39 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 99.31 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.3 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 99.23 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 99.14 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.03 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 98.61 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 98.46 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 98.35 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 98.17 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 97.89 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 97.82 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 96.67 | |
| KOG0630 | 838 | consensus Predicted pyridoxal-dependent decarboxyl | 90.71 | |
| PF02310 | 121 | B12-binding: B12 binding domain; InterPro: IPR0061 | 87.32 | |
| TIGR03573 | 343 | WbuX N-acetyl sugar amidotransferase. This enzyme | 85.72 | |
| COG1066 | 456 | Sms Predicted ATP-dependent serine protease [Postt | 83.68 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 81.38 | |
| COG1105 | 310 | FruK Fructose-1-phosphate kinase and related fruct | 81.13 |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-52 Score=363.58 Aligned_cols=347 Identities=40% Similarity=0.654 Sum_probs=324.9
Q ss_pred cccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEE
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIIS 89 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~ 89 (367)
.+++.|||.+++++|+++|.+...+|++++|.....++.+.++..++.+..+.+++++|||.+++.++.+++.|||+|++
T Consensus 6 ~~Ll~PGP~~v~~~V~~am~~~~~~h~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~pgdkVLv 85 (383)
T COG0075 6 RLLLTPGPVPVPPRVLLAMARPMVGHRSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVEPGDKVLV 85 (383)
T ss_pred ceeeeCCCCCCCHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccCCCCeEEE
Confidence 78999999999999999999999999999999999999999999999996566899999999999999999999999999
Q ss_pred EeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCC
Q 017726 90 FLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHP 169 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~ 169 (367)
...+.|+.+|.+++++.|.+++.+..+....+|+++++++++++ +..++|.++|..++||...|+++|.++|++ ||
T Consensus 86 ~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~--~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~--~g 161 (383)
T COG0075 86 VVNGKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKD--PDIKAVAVVHNETSTGVLNPLKEIAKAAKE--HG 161 (383)
T ss_pred EeCChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcC--CCccEEEEEeccCcccccCcHHHHHHHHHH--cC
Confidence 99999999999999999999999999988889999999999965 478999999999999999999999999999 99
Q ss_pred cEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCC
Q 017726 170 ALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPY 249 (367)
Q Consensus 170 ~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (367)
+++|+|+..++|..+++++++++|+++++++|++++|+|+|++..+++..+.+.....+++|+|+..+.+.++....+++
T Consensus 162 ~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~ 241 (383)
T COG0075 162 ALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPY 241 (383)
T ss_pred CEEEEEecccCCCcccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999987777899999999888876345799
Q ss_pred CCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhh
Q 017726 250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQR 329 (367)
Q Consensus 250 ~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 329 (367)
|+++..+.++..+++.+.++|++.+.++++++++.+++.++++|++++. +++..++.++.+..|.+++..++...++++
T Consensus 242 Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~-~~~~~s~tvta~~~P~g~~~~~~~~~~~~~ 320 (383)
T COG0075 242 TPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALGLELFA-DPERRSPTVTAIKVPEGVDDKKVRRALLKE 320 (383)
T ss_pred CCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCcccc-CcccCCCceEEEECCCCCCcHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998 666788899999999998877777788889
Q ss_pred CCeEEccCCCCCCCcEEEEeecCCCCHHHHHH
Q 017726 330 YNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNF 361 (367)
Q Consensus 330 ~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~ 361 (367)
+|+.+.+|..++.+.+||||.+|.....|+..
T Consensus 321 ~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~ 352 (383)
T COG0075 321 YGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLA 352 (383)
T ss_pred CCEEecccccccCccEEEEecCccCCHHHHHH
Confidence 99999999999999999999999777766543
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=372.61 Aligned_cols=358 Identities=80% Similarity=1.295 Sum_probs=318.6
Q ss_pred CCCCCCCCCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc
Q 017726 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT 80 (367)
Q Consensus 1 ~~~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~ 80 (367)
|+|++.|++.+++.|||..++++|++++.+....|+++.+.+.++++++.+++++|.+.++.+++++|||+++..++.++
T Consensus 1 ~~~~~~~~~~~l~~pGP~~~~~~V~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~ 80 (401)
T PLN02409 1 MDYVYAPGRNHLFVPGPVNIPERVLRAMNRPNEDHRSPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNT 80 (401)
T ss_pred CCcccCCCCceeccCCCCCCCHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhc
Confidence 68999999999999999999999999999987778888899999999999999999986566899999999999999989
Q ss_pred CCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHH
Q 017726 81 LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVR 160 (367)
Q Consensus 81 ~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~ 160 (367)
+++||+|++++++|++..|...++..|++++.++.+.+..+|++++++++++++.+++++|++++++|+||.++|+++|.
T Consensus 81 ~~~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~ 160 (401)
T PLN02409 81 LSPGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVR 160 (401)
T ss_pred CCCCCEEEEeCCCchhHHHHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHH
Confidence 99999999999999998887888989999999998876678999999999853212689999999999999999999999
Q ss_pred HH--HHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHH
Q 017726 161 KL--LDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYI 238 (367)
Q Consensus 161 ~~--~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (367)
++ |++ +|+++++|++++++..++++.++++|++++|+|||+++|+|+|+++++++.++++.+......+++|....
T Consensus 161 ~l~~~~~--~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (401)
T PLN02409 161 KLLDCAQ--HPALLLVDGVSSIGALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWADYL 238 (401)
T ss_pred HHHhhhc--cCcEEEEEcccccCCccccccccCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecCHHHHH
Confidence 99 998 99999999999999999999888999999999999999999999999999999887665555667776655
Q ss_pred HHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCC
Q 017726 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHIN 318 (367)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (367)
...+.++++++|+++..++++.++++++.+.|++++.++..++++++++.|+++|+++..+++..+++.++++.+|++.+
T Consensus 239 ~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~~~~~p~~~~ 318 (401)
T PLN02409 239 KFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAWGLKLCTKKPEWRSDTVTAVVVPEGID 318 (401)
T ss_pred HHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcccceEEEeCCCCCC
Confidence 54455555577899999999999999999999999999999999999999998999888765455677788898888888
Q ss_pred HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 319 SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 319 ~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
..++.+.|.+++||.+..|.+...+..||||.+++++..|+.
T Consensus 319 ~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~ 360 (401)
T PLN02409 319 SAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLL 360 (401)
T ss_pred HHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHH
Confidence 889999998889999999998877899999999998877764
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-47 Score=314.48 Aligned_cols=354 Identities=41% Similarity=0.636 Sum_probs=324.6
Q ss_pred CCCCCCCCCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc
Q 017726 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT 80 (367)
Q Consensus 1 ~~~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~ 80 (367)
|+||+-|.+. +++|||..++.+|.+++......|.+|++.++..++++-+...|...++.-.++.++|+.+++.++.++
T Consensus 10 ~~~m~~p~~~-L~gPGPsnl~~~V~~A~~~~~lgh~sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~ 88 (385)
T KOG2862|consen 10 LDPMYVPVRT-LLGPGPSNLSGRVQEAMSRPSLGHMSPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNL 88 (385)
T ss_pred hccccCCcce-eecCCCcCCCHHHHHhhcCCccccCCHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhh
Confidence 5899999998 999999999999999999999999999999999999999999999987777899999999999999999
Q ss_pred CCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc-HHHH
Q 017726 81 LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN-LSKV 159 (367)
Q Consensus 81 ~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~-~~~i 159 (367)
+.|||+|++...+.|+.++...+++.|+++..++.+.+....+|.+++++.. +++++|++++..+.||...| ++.+
T Consensus 89 lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsq---h~p~~vfv~hgdsSTgV~q~~~~~~ 165 (385)
T KOG2862|consen 89 LEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQ---HKPKAVFVTHGDSSTGVLQDLLAIS 165 (385)
T ss_pred cCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHh---cCCceEEEEecCccccccchHHHHH
Confidence 9999999999999999999999999999999999888888999999999997 57899999999999999999 6778
Q ss_pred HHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCC--CceeechHHH
Q 017726 160 RKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS--VRVFFDWKDY 237 (367)
Q Consensus 160 ~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 237 (367)
.++|++ |++++++|...+.|+.++.++++++|+....++|.+++|+|+++++.++...++++..+. -.+|+|+...
T Consensus 166 g~lc~k--~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~ 243 (385)
T KOG2862|consen 166 GELCHK--HEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYFDILRL 243 (385)
T ss_pred HHHhhc--CCeEEEEechhhcCCccceehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEEeHHhh
Confidence 999998 999999999999999999999999999999999999999999999999999999988776 4577886665
Q ss_pred HHHhhcC---CccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcC
Q 017726 238 IKFYNLG---TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 238 ~~~~~~~---~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 314 (367)
...+..+ +.++.|+++..+.++.+||+.+.++|+++..+++++.+++++..|+++|++....+++.+.+.+..+.+|
T Consensus 244 ~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptvttv~vp 323 (385)
T KOG2862|consen 244 GNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPTVTTVKVP 323 (385)
T ss_pred cchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceecChhhccCcceeeecC
Confidence 4443322 4568899999999999999999999999999999999999999999999998887777788889999999
Q ss_pred CCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 315 SHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 315 ~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
.+.|..+++.++.+++++.+..|..+..+.++|||..+.+...+..
T Consensus 324 ~gvDw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~gcna~~e~i 369 (385)
T KOG2862|consen 324 YGVDWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLGCNANVEYI 369 (385)
T ss_pred CCCCHHHHHHHHHHhcCEEeccccCCCcccEEEEEEeeccCCcHHH
Confidence 9999999999999999999999999999999999998876554433
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=334.36 Aligned_cols=344 Identities=20% Similarity=0.247 Sum_probs=294.8
Q ss_pred CCcccccCCCCCChHHHHHHHccCC-----CCCCCC-----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNN-----EDYRSP-----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL 77 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~-----~~~~~~-----~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~ 77 (367)
.-+|++.++.+..|..|++++.++. +.+++. ...+.++++|+.+++++|+++.++|+||.|+|++++.+.
T Consensus 22 ~~vylD~aa~~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va 101 (405)
T COG0520 22 PLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVA 101 (405)
T ss_pred CeEEecCcccccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHH
Confidence 3479999999999999999999853 224322 235678999999999999996556999999999999999
Q ss_pred Hcc---CCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 78 TNT---LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 78 ~~~---~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
.++ +.+||+|++++.+|+++. |...++..|++++.+|.++++.++.|+++..++ ++||+|.+++.+|.||.
T Consensus 102 ~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~----~~Tklvais~vSn~tG~ 177 (405)
T COG0520 102 RGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLIT----PKTKLVALSHVSNVTGT 177 (405)
T ss_pred HHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcC----CCceEEEEECccccccc
Confidence 887 689999999999999985 888888899999999999889999999999888 57899999999999999
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceee
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF 232 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~ 232 (367)
+.|+++|.++||+ +|+++++|++|+.++.++|+..+++|++++|+|||+.||.|+|++++++++++++.+....+...
T Consensus 178 ~~pv~~I~~la~~--~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l~P~~~gg~~~ 255 (405)
T COG0520 178 VNPVKEIAELAHE--HGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGMI 255 (405)
T ss_pred cchHHHHHHHHHH--cCCEEEEECccccCccCCCchhcCCCEEEEcccccccCCCceEEEEEchHHHhhcCCcccCCCce
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999997765543332
Q ss_pred c---------hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc
Q 017726 233 D---------WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE 302 (367)
Q Consensus 233 ~---------~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 302 (367)
+ +.....+++.|+ +++.+.+++.+|++++++.|++++.++.+++.+++.+.|++. +++++.+..
T Consensus 256 ~~~~~~~~~~~~~~p~rfe~gT-----pn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~- 329 (405)
T COG0520 256 EYVSRDEGVTLAELPLRFEAGT-----PNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPD- 329 (405)
T ss_pred eeecccccccccCcchhhccCC-----chHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCc-
Confidence 2 234456777775 999999999999999999999999999999999999999998 899999755
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCC--------CcEEEEeecCCCCHHHHH--Hhhhh
Q 017726 303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVA--------GKVFRIGHLGHLNEVMFN--FQLLF 365 (367)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~--------~~~iRi~~~~~~~~~~~~--~~~l~ 365 (367)
.....++.|.+ +++++.++...|.++ ||.++.|.++-. ...+|+|++.+++.+|++ .++|+
T Consensus 330 ~~r~~~vsF~v-~~~~~~dv~~~L~~~-gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~ 400 (405)
T COG0520 330 ADRGGIVSFNV-KGIHPHDVATLLDEK-GIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALK 400 (405)
T ss_pred ccCceEEEEEe-CCCCHHHHHHHHHhC-CeEEEeccccccHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHH
Confidence 33456889998 688999999999766 899999865421 234999998888766554 44443
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=315.88 Aligned_cols=349 Identities=46% Similarity=0.734 Sum_probs=282.3
Q ss_pred ccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 11 HLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 11 ~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
.+|+|||.++|+++++++.+....++++...+..+++++.+++++|.++++.+++++|+++++..++.+++.+||.|++.
T Consensus 1 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~ 80 (356)
T cd06451 1 LLLIPGPSNVPPRVLKAMNRPMLGHRSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLEPGDKVLVG 80 (356)
T ss_pred CcccCCCcCCCHHHHHHhCCCccCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhCCCCCEEEEe
Confidence 47999999999999999998765566666777899999999999999665567899999999999999999999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCc
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPA 170 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~ 170 (367)
.++|++..+...++..|.+++.++.+.++.+|++++++.+++ +++++|++++++||+|.+.|+++|.++|++ +|+
T Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~---~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~--~~~ 155 (356)
T cd06451 81 VNGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQ---HDIKAVTLTHNETSTGVLNPLEGIGALAKK--HDA 155 (356)
T ss_pred cCCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhc---cCCCEEEEeccCCCcccccCHHHHHHHHHh--cCC
Confidence 888887545567788999999999887778999999999974 267999999999999999999999999999 999
Q ss_pred EEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhcc-CCCCceeechHHHHHHhhcCCccCC
Q 017726 171 LFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKT-AKSVRVFFDWKDYIKFYNLGTFWPY 249 (367)
Q Consensus 171 ~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (367)
++++|++|+++..+++....++|+++.|+||++++|.|+|++++++++++++.. .....++.+..........+.+..+
T Consensus 156 ~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (356)
T cd06451 156 LLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPH 235 (356)
T ss_pred EEEEeeehhccCccccccccCccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCC
Confidence 999999999888777777778999999999999988999999999999887763 1111223332222221111212345
Q ss_pred CCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhh
Q 017726 250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQR 329 (367)
Q Consensus 250 ~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 329 (367)
++++..+.++.++++++.+.|++++.++..++++++.+.|+++|+++..+. ..+.+.++++..+++.+..++++.|.++
T Consensus 236 t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 314 (356)
T cd06451 236 TPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEALGLKLLAKP-ELRSPTVTAVLVPEGVDGDEVVRRLMKR 314 (356)
T ss_pred CChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCc-ccCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 688888899999999998888999999999999999999999888776542 2235555667776667888999999876
Q ss_pred CCeEEccCCCCCCCcEEEEeecCCCCHH--HHHHhhhh
Q 017726 330 YNLSLGLGLNKVAGKVFRIGHLGHLNEV--MFNFQLLF 365 (367)
Q Consensus 330 ~gv~v~~g~~~~~~~~iRi~~~~~~~~~--~~~~~~l~ 365 (367)
+||.+.+|..+..+.++|++++..++++ +.+..+|+
T Consensus 315 ~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~ 352 (356)
T cd06451 315 YNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALE 352 (356)
T ss_pred CCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHH
Confidence 7999998876555678999998776544 44444444
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=312.64 Aligned_cols=342 Identities=22% Similarity=0.300 Sum_probs=280.8
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCC-ceEEecCChhHHHHHHHHccCCCCCeE
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLIPTTGTGAWESALTNTLSPGDRI 87 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~v~~~~ggt~al~~~~~~~~~~gd~v 87 (367)
+.+++.|||..++++|.+++.+.+ .++...+....+++|+.+++++|+++. +.+++|+|||+++..++.+++.+||++
T Consensus 3 ~~~l~~pgp~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~v 81 (363)
T TIGR02326 3 NYLLLTPGPLTTSRTVKEAMLFDW-CTWDSDYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKL 81 (363)
T ss_pred ceeEecCCCCCCCHHHHHHhCCCC-CCCChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeE
Confidence 467899999999999999999877 566778889999999999999999764 469999999999999999988899998
Q ss_pred EEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcC
Q 017726 88 ISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYR 167 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~ 167 (367)
++..+++|+..+...++..|.+++.++.+.++.+|+++++++++++ ++++++++++++||||.+.|+++|.++|++
T Consensus 82 lv~~~~~~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~--~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~-- 157 (363)
T TIGR02326 82 LVVINGAYGARIVQIAEYLGIPHHVVDTGEVEPPDVVEVEAILAAD--PAITHIALVHCETTTGILNPIEAVAKLAHR-- 157 (363)
T ss_pred EEEeCChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhC--CCccEEEEEeecCCccccCcHHHHHHHHHH--
Confidence 8888878876656778889999999999888889999999999864 256789999999999999999999999999
Q ss_pred CCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhc-CCc
Q 017726 168 HPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL-GTF 246 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 246 (367)
+|+++++|++++++..++++..+++|++++|+|||++||+|+|+++++++.++++... ..+.+.+.......+.. ...
T Consensus 158 ~g~~livD~~~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 236 (363)
T TIGR02326 158 HGKVTIVDAMSSFGGIPIDIAELHIDYLISSANKCIQGVPGFGFVIARQAELAACKGN-ARSLSLDLYDQWRCMEDNHGK 236 (363)
T ss_pred cCCEEEEEccccccCcccchhhcCccEEEecCccccccCCcceEEEECHHHHHHhhcC-CCceeecHHHHHHHHhccCCC
Confidence 9999999999999999999888899999999999999999999999999988776542 22334443222222221 112
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCC--CCHHHHH
Q 017726 247 WPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH--INSSEIV 323 (367)
Q Consensus 247 ~~~~~~~~~~~al~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~ 323 (367)
..++++...+.++.++++.+.+. |++++.++++++++++++.|+++|+.+..+. ..+++.+++|.+++. .+..++.
T Consensus 237 ~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~ 315 (363)
T TIGR02326 237 WRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRALGFEPLLDD-EIQSPIITSFYSPEDPDYRFADFY 315 (363)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCc-ccCCceEEEEECCCCCCCCHHHHH
Confidence 35678888999999999998776 4888999999999999999999988776542 224555677888653 5667899
Q ss_pred HHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 324 RRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 324 ~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
+.|.++ ||.+.+|... ....||||+++.++.+|+
T Consensus 316 ~~L~~~-gi~v~~g~~~-~~~~iRi~~~~~~~~edv 349 (363)
T TIGR02326 316 QRLKEQ-GFVIYPGKVS-QVDCFRIGNIGEVDAADI 349 (363)
T ss_pred HHHHHC-CEEEECCcCC-CCCEEEEecCCCCCHHHH
Confidence 999655 9999988654 346899998886655443
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=315.82 Aligned_cols=343 Identities=24% Similarity=0.341 Sum_probs=285.9
Q ss_pred cccccCCCCCChHHHHHHHccCCC----------CCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHc
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNNE----------DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN 79 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~~----------~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~ 79 (367)
+|++.+|+.++|+.|++++.++.. .+++..+.+..+++|+.+++++|++++++|++++|+|+++..++.+
T Consensus 1 iYld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~ 80 (371)
T PF00266_consen 1 IYLDNAGTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASS 80 (371)
T ss_dssp EEEBTSSS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHH
T ss_pred CEeeCCCccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhc
Confidence 589999999999999999998622 1223346788999999999999999856799999999999999998
Q ss_pred c---CCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc
Q 017726 80 T---LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN 154 (367)
Q Consensus 80 ~---~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~ 154 (367)
+ +.+|++|++.+.+|++.. |..+++..|+++..++.+.++.+|+++++++++ +++++|++++.+|.+|.+.
T Consensus 81 l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~----~~~~lv~~~~~~~~tG~~~ 156 (371)
T PF00266_consen 81 LLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALN----PDTRLVSISHVENSTGVRN 156 (371)
T ss_dssp HHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHH----TTESEEEEESBETTTTBBS
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccchhhhhhhhhhhc----cccceEEeecccccccEEe
Confidence 8 799999999999999987 777777899999999998888999999999998 5789999999999999999
Q ss_pred cHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeech
Q 017726 155 NLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDW 234 (367)
Q Consensus 155 ~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 234 (367)
|+++|.++||+ +|+++++|++|+++..++++.++++|++++|+|| |.||+|+|+++++++..+++.+......+.+.
T Consensus 157 pi~~I~~~~~~--~~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~K-l~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~ 233 (371)
T PF00266_consen 157 PIEEIAKLAHE--YGALLVVDAAQSAGCVPIDLDELGADFLVFSSHK-LGGPPGLGFLYVRPEAIERLRPAKPGGGYLDF 233 (371)
T ss_dssp SHHHHHHHHHH--TTSEEEEE-TTTTTTSS--TTTTTESEEEEESTS-TTSSSTEEEEEEEHHHHHHHHTSSSSSSTTTH
T ss_pred eeceehhhhhc--cCCceeEechhccccccccccccccceeeecccc-cCCCCchhhheehhhhhhcccccccccccccc
Confidence 99999999999 9999999999999999999999999999999999 88999999999999999999766654443332
Q ss_pred HHHHH-Hh--hcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEE
Q 017726 235 KDYIK-FY--NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTA 310 (367)
Q Consensus 235 ~~~~~-~~--~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~ 310 (367)
..... .+ ....+..+|+++..++++..+++.+.+.|++++.++..++++++.+.|+++ ++.++.++...+++.++.
T Consensus 234 ~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~ 313 (371)
T PF00266_consen 234 PSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVS 313 (371)
T ss_dssp HHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEE
T ss_pred ccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEE
Confidence 22211 01 111223447999999999999999998899999999999999999999998 677777655557777899
Q ss_pred EEcCCCCCHHHHHHHHHhhCCeEEccCCCCC--------CCcEEEEeecCCCCHHHHHH
Q 017726 311 VIVPSHINSSEIVRRAWQRYNLSLGLGLNKV--------AGKVFRIGHLGHLNEVMFNF 361 (367)
Q Consensus 311 ~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~--------~~~~iRi~~~~~~~~~~~~~ 361 (367)
|.+ ++.+..++.+.|.++ ||.+..|.... .++.+|+|++.+++.+|+++
T Consensus 314 ~~~-~~~~~~~~~~~L~~~-~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~ 370 (371)
T PF00266_consen 314 FNL-PGSDADDVVKYLEER-GIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDR 370 (371)
T ss_dssp EEE-TTSSHHHHHHHHHHH-TEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHH
T ss_pred Eee-cCCCHHHHHHHHhhc-CEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhh
Confidence 998 678899999999877 99999875543 23789999999999998864
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=309.69 Aligned_cols=352 Identities=22% Similarity=0.286 Sum_probs=283.3
Q ss_pred CCCCCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCC-ceEEecCChhHHHHHHHHccCCC
Q 017726 5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLIPTTGTGAWESALTNTLSP 83 (367)
Q Consensus 5 ~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~v~~~~ggt~al~~~~~~~~~~ 83 (367)
|-..+.++|.|||.++++.+.+++.+.+ .++.+.+.+..+++++.+++++|.++. +.+++++||++++..++.++..+
T Consensus 1 ~~~~~~~~~~pgP~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~~ 79 (368)
T PRK13479 1 MTENDPLLLTPGPLTTSRTVREAMLRDW-GSWDDDFNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVPR 79 (368)
T ss_pred CCCCCceeecCCCCCCCHHHHHHhCCCC-CCCChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccCC
Confidence 3445667999999999999999998875 566666778999999999999999653 55889999999999999999999
Q ss_pred CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHH
Q 017726 84 GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLL 163 (367)
Q Consensus 84 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~ 163 (367)
||.+++..+++|+..+...++..|++++.++.+.++.+|+++++++++++ +++++|++++++||||...|+++|.++|
T Consensus 80 ~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~--~~~~~v~~~~~~~~tG~~~~~~~i~~l~ 157 (368)
T PRK13479 80 DGKVLVPDNGAYGARIAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAAD--PRITHVALVHCETTTGILNPLDEIAAVA 157 (368)
T ss_pred CCeEEEEeCCchHHHHHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhC--CCCcEEEEEcccCccccccCHHHHHHHH
Confidence 99999998888887666778889999999999877789999999999754 3578999999999999999999999999
Q ss_pred HhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhc
Q 017726 164 DEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL 243 (367)
Q Consensus 164 ~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (367)
++ +|+++++|++++++..++++..+++|++++|+|||+.|++|+|+++++++.++++.... ..++.++.........
T Consensus 158 ~~--~~~~livDa~~~~g~~~~~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 234 (368)
T PRK13479 158 KR--HGKRLIVDAMSSFGAIPIDIAELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNS-RSLSLDLYDQWAYMEK 234 (368)
T ss_pred HH--cCCEEEEEcccccCCccccccccCceEEEecCccccccCCCceEEEECHHHHHHhhcCC-CCeeecHHHHHhhhcc
Confidence 99 99999999999998888888888899999999999999999999999999988877543 3344443332221111
Q ss_pred CCccCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCC--CCHH
Q 017726 244 GTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH--INSS 320 (367)
Q Consensus 244 ~~~~~~~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 320 (367)
....+++++...++++.++++.+.+.| +++..+++.++++++.+.|+++|+++..+. ...++.++.|.++.. .+..
T Consensus 235 ~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 313 (368)
T PRK13479 235 TGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRALGFEPLLDA-EIQSPIIVTFHAPADPAYDFK 313 (368)
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCcccCCc-hhcCceEEEEECCCCCCcCHH
Confidence 222356889889999999999887664 888899999999999999999998776542 224445566776543 5678
Q ss_pred HHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHH--HHHHhhhh
Q 017726 321 EIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV--MFNFQLLF 365 (367)
Q Consensus 321 ~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~--~~~~~~l~ 365 (367)
++.++|.++ ||.+++|... ....+|+|.+++++.+ +....+|+
T Consensus 314 ~l~~~L~~~-gi~v~~g~~~-~~~~iRis~~~~~t~edi~~~l~~L~ 358 (368)
T PRK13479 314 EFYERLKEQ-GFVIYPGKLT-QVDTFRIGCIGDVDAADIRRLVAAIA 358 (368)
T ss_pred HHHHHHHHC-CEEEecCCCC-CCCEEEEecCCCCCHHHHHHHHHHHH
Confidence 899999765 9999887533 2457999987855544 44444443
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=302.56 Aligned_cols=346 Identities=23% Similarity=0.339 Sum_probs=277.7
Q ss_pred ccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCc-eEEecCChhHHHHHHHHccCCCCCeEEE
Q 017726 11 HLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGT-PFLIPTTGTGAWESALTNTLSPGDRIIS 89 (367)
Q Consensus 11 ~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~v~~~~ggt~al~~~~~~~~~~gd~vl~ 89 (367)
.+|.|||..+++.+.+++.+ ...++...+.+..+++|+.+++++|+++.+ .+++++||++++..++.+++.++|++++
T Consensus 1 ~~~~p~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~ 79 (355)
T TIGR03301 1 ILLTPGPLSTSATVRDAMLV-DWCHWDSEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLV 79 (355)
T ss_pred CcCcCCCCCCCHHHHHHhhh-hccCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEE
Confidence 36899999999999999998 344666567788999999999999998653 5788999999999999998888999888
Q ss_pred EeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCC
Q 017726 90 FLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHP 169 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~ 169 (367)
..+++|+..+...++..|.+++.++.+.++.+|++++++.++++ ++++++++++++|++|.+.|+++|.++|++ +|
T Consensus 80 ~~~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~--~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~--~~ 155 (355)
T TIGR03301 80 LINGAYGERLAKICEYLGIPHTDLNFSEYEPPDLNRIEEALAAD--PDITHVATVHHETTTGILNPLEAIAKVARS--HG 155 (355)
T ss_pred ECCCchhhHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHHhC--CCceEEEEEecCCcccchhHHHHHHHHHHH--cC
Confidence 88877776555677889999999998877889999999999864 366788999999999999999999999999 99
Q ss_pred cEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCC
Q 017726 170 ALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPY 249 (367)
Q Consensus 170 ~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (367)
+++++|++++++..++++...++|++++|++|+++|++|+|+++++++.++.+.. .......++.....++......++
T Consensus 156 ~~livD~~~s~g~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 234 (355)
T TIGR03301 156 AVLIVDAMSSFGAIPIDIEELDVDALIASANKCLEGVPGFGFVIARRDLLEASAG-NARSLYLDLYDQWAYMEKTGKWRF 234 (355)
T ss_pred CEEEEEeccccCCcccchhhcCccEEEecCCcccccCCceeEEEECHHHHHHhhC-CCCCceeeHHHHHHHhhhcCCCCC
Confidence 9999999999988888877778999999999999889999999999999988764 222334444332222222222367
Q ss_pred CCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCC--CCHHHHHHHH
Q 017726 250 TPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH--INSSEIVRRA 326 (367)
Q Consensus 250 ~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L 326 (367)
+++...+.++.++++.+.++| +++..++++++++++.+.|+++|+++..+.. ...+.++++++|.. .+..++.++|
T Consensus 235 t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 313 (355)
T TIGR03301 235 TPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALGFQPLLPER-WQSPIIVSFLYPDDPDFDFDDFYQEL 313 (355)
T ss_pred CCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCC-CCCCcEEEEECCCCCcchHHHHHHHH
Confidence 889988899999999998877 8889999999999999999998887655422 23444567887643 4557899999
Q ss_pred HhhCCeEEccCCCCCCCcEEEEeecCCCCH--HHHHHhhhh
Q 017726 327 WQRYNLSLGLGLNKVAGKVFRIGHLGHLNE--VMFNFQLLF 365 (367)
Q Consensus 327 ~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~--~~~~~~~l~ 365 (367)
.++ ||.+.++..... .++||++++.++. .+...+.|+
T Consensus 314 ~~~-gi~i~~~~~~~~-~~iRis~~~~~~~~~i~~~~~~l~ 352 (355)
T TIGR03301 314 KER-GFVIYPGKLTLA-DTFRIGTIGEIDAADIERLLEAIK 352 (355)
T ss_pred HHC-CEEEECCccccc-cEEEEecCCCCCHHHHHHHHHHHH
Confidence 755 999998764433 6899998886554 444444444
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=304.08 Aligned_cols=337 Identities=17% Similarity=0.202 Sum_probs=273.0
Q ss_pred CCCcccccCCCCCChHHHHHHHccCCCC-----CCC-----CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHH
Q 017726 7 PGKNHLFVPGPVHIPDQVIRAMNRNNED-----YRS-----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESA 76 (367)
Q Consensus 7 ~~~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~-----~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~ 76 (367)
+..+|++.++-+++|+.+++++.++... +++ ....+..+++|+.+++++|++++++|++++|+|+++..+
T Consensus 18 ~~~~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~ 97 (401)
T PRK10874 18 DAGVYLDSAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLV 97 (401)
T ss_pred CceEEEeCCcccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHH
Confidence 3478999999999999999999875431 221 224566889999999999995555699999999999999
Q ss_pred HHcc----CCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCc
Q 017726 77 LTNT----LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETAT 150 (367)
Q Consensus 77 ~~~~----~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~t 150 (367)
+.++ +.+||+|++++++|++.. |...++..|++++.++.+.++.+|+++++++++ ++|++|++++++|||
T Consensus 98 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~----~~t~lv~i~~~~n~t 173 (401)
T PRK10874 98 AQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELIT----PRTRILALGQMSNVT 173 (401)
T ss_pred HHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcC----cCcEEEEEeCCcccc
Confidence 8876 479999999999998863 667778899999999998778899999999997 467999999999999
Q ss_pred cccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCce
Q 017726 151 GVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV 230 (367)
Q Consensus 151 G~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~ 230 (367)
|.+.|+++|.++|++ +|+++++|++|+.+..++++...++|++++|+||.+ ||.|+|+++++++.++++.+......
T Consensus 174 G~~~~~~~i~~l~~~--~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~-gp~G~G~l~~~~~~~~~~~~~~~~~~ 250 (401)
T PRK10874 174 GGCPDLARAITLAHQ--AGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKLY-GPTGIGVLYGKSELLEAMSPWQGGGK 250 (401)
T ss_pred cCcCCHHHHHHHHHH--cCCEEEEECCcccccccCCchhcCCCEEEEeccccc-CCCccEEEEEchHHHhcCCCeecCCc
Confidence 999999999999999 999999999999888888887778999999999955 79999999999999888765432211
Q ss_pred ee---c-----hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCC
Q 017726 231 FF---D-----WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKE 301 (367)
Q Consensus 231 ~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 301 (367)
.. + ......+++.| |+++..++++.++++++.+.|.+++.++..++++++.+.|+++ |+.+..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~e~G-----t~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~-- 323 (401)
T PRK10874 251 MLTEVSFDGFTPQSAPWRFEAG-----TPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKLPGFRSFRC-- 323 (401)
T ss_pred ceEeeccCccCCCCChhhccCC-----CcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC--
Confidence 10 1 11122345544 5999999999999999999998889999999999999999987 8877654
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC--------CCcEEEEeecCCCCHHHHHH
Q 017726 302 EWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV--------AGKVFRIGHLGHLNEVMFNF 361 (367)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~--------~~~~iRi~~~~~~~~~~~~~ 361 (367)
....+++|.+ ++.+..++.+.|.+ +||.+++|..+. ..+++|||++.+++++|+..
T Consensus 324 --~~~~i~~~~~-~~~~~~~~~~~L~~-~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ 387 (401)
T PRK10874 324 --QDSSLLAFDF-AGVHHSDLVTLLAE-YGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDA 387 (401)
T ss_pred --CCCcEEEEEE-CCcCHHHHHHHHHH-CCcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHH
Confidence 2345777887 45677899988865 599999876432 24689999988777665544
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=303.37 Aligned_cols=335 Identities=17% Similarity=0.175 Sum_probs=271.1
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCC-----CCCC-----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNED-----YRSP-----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL 77 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~-----~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~ 77 (367)
..+|++.++-+++|+.+++++.+.... +++. ...+..+++|+.+++++|.+++++|++|+|+|+++..++
T Consensus 16 ~~iyld~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~ 95 (398)
T TIGR03392 16 GTVYLDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLVA 95 (398)
T ss_pred CeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHH
Confidence 468999999999999999999875321 2211 234567899999999999965556999999999999998
Q ss_pred Hcc----CCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcc
Q 017726 78 TNT----LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATG 151 (367)
Q Consensus 78 ~~~----~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG 151 (367)
.++ +.+||+|++++++|++.. +...++..|++++.++.+.++.+|+++++++++ +++++|++++++||||
T Consensus 96 ~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~----~~t~lv~i~~~~n~tG 171 (398)
T TIGR03392 96 QSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLT----PRTRILALGQMSNVTG 171 (398)
T ss_pred HHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhc----cCceEEEEECcccccc
Confidence 876 578999999999998853 556778899999999998777889999999997 4679999999999999
Q ss_pred ccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCcee
Q 017726 152 VTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF 231 (367)
Q Consensus 152 ~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~ 231 (367)
.+.|+++|.++|++ +|+++++|++|+.+..++++...++|++++|+||.+ ||.|+|+++++++.++++.+.......
T Consensus 172 ~~~~~~~i~~~~~~--~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~-gp~G~G~l~~~~~~~~~~~~~~~~~~~ 248 (398)
T TIGR03392 172 GCPDLARAITLAHQ--YGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLY-GPTGIGVLYGKTELLEAMPPWQGGGKM 248 (398)
T ss_pred ccCCHHHHHHHHHH--cCCEEEEEhhhhcCCCCCChhhcCCCEEEEeccccc-CCCceEEEEEcHHHHhhCCCeecCCce
Confidence 99999999999999 999999999999888888877778999999999965 789999999999998887654322111
Q ss_pred e--------chHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc
Q 017726 232 F--------DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE 302 (367)
Q Consensus 232 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 302 (367)
. .......+++.| |+++..++++.++++++.+.|++++.++..++++++.+.|+++ |+.+..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~e~G-----T~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~--- 320 (398)
T TIGR03392 249 LSHVSFDGFIPQAVPHRFEAG-----TPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFRSFRC--- 320 (398)
T ss_pred EeeccccccccCCChhhccCC-----CCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC---
Confidence 0 111223455555 5999999999999999999899899999999999999999987 8877653
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC--------CCcEEEEeecCCCCHHHHH
Q 017726 303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV--------AGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~--------~~~~iRi~~~~~~~~~~~~ 360 (367)
....++.|.+ ++.+..++.+.|.+ +||.++.|..+. .++++|+|++.+++.+|+.
T Consensus 321 -~~~~i~~~~~-~~~~~~~l~~~L~~-~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~ 383 (398)
T TIGR03392 321 -PGSSLLAFDF-AGVHHSDLAALLAE-SGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVD 383 (398)
T ss_pred -CCCcEEEEEe-CCcCHHHHHHHHHh-CCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHHH
Confidence 2345777887 46678899999865 599999876431 2468999998877665444
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-40 Score=302.32 Aligned_cols=340 Identities=18% Similarity=0.179 Sum_probs=273.4
Q ss_pred CcccccCCCCCChHHHHHHHccCCCC-----CCCC-----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNED-----YRSP-----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT 78 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~-----~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~ 78 (367)
.+|++.++.+++|+.+++++.++... +.+. ......+++|+.+++++|..++++|++|+|+|+++..++.
T Consensus 24 ~iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~ 103 (406)
T PRK09295 24 LAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVAN 103 (406)
T ss_pred eEEEeCcccccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHH
Confidence 48999999999999999998775421 1211 2456688999999999998544569999999999998887
Q ss_pred c----cCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 79 N----TLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 79 ~----~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
+ .+.+||+|++++++|++.. |...++..|++++.++.+.++.+|+++++++++ +++++|++++++||||.
T Consensus 104 ~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~----~~t~lv~l~~~~n~tG~ 179 (406)
T PRK09295 104 SWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFD----ERTRLLAITHVSNVLGT 179 (406)
T ss_pred HhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHhcC----CCcEEEEEecchhcccc
Confidence 5 4689999999999988763 666778889999999998888899999999997 46799999999999999
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCcee-
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF- 231 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~- 231 (367)
+.|+++|.++|++ +|+++++|++|+.+..++++...++|++++|+||. .||.|+|++++++++++++.+.......
T Consensus 180 ~~~~~~i~~~~~~--~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~-~gp~G~G~l~~~~~~~~~~~~~~~g~~~~ 256 (406)
T PRK09295 180 ENPLAEMIALAHQ--HGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKL-YGPTGIGILYVKEALLQEMPPWEGGGSMI 256 (406)
T ss_pred cCCHHHHHHHHHH--cCCEEEEEcccccCccccCchhcCCCEEEeehhhc-cCCCCcEEEEEchHhHhhCCCcccCCcee
Confidence 9999999999999 99999999999999988888888999999999995 4799999999999988877543322110
Q ss_pred --e------chHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc
Q 017726 232 --F------DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE 302 (367)
Q Consensus 232 --~------~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 302 (367)
. .+.....+++.| |+++..++++.++++++.+.|++++.++.+++++++.+.|+++ |++++.+..
T Consensus 257 ~~~~~~~~~~~~~~~~r~e~G-----T~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~- 330 (406)
T PRK09295 257 ATVSLTEGTTWAKAPWRFEAG-----TPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQN- 330 (406)
T ss_pred eeeecCCccccCCchhhcCCC-----CccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC-
Confidence 0 111222455544 5999999999999999999999999999999999999999987 788877531
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC--------CCcEEEEeecCCCCHHH--HHHhhhh
Q 017726 303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV--------AGKVFRIGHLGHLNEVM--FNFQLLF 365 (367)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~--------~~~~iRi~~~~~~~~~~--~~~~~l~ 365 (367)
+ ..++.|.++ +.+..++.+.|. ++||.++.|..+. .+..+|+|++.+++.+| .+.++|+
T Consensus 331 -~-~~iv~~~~~-~~~~~~~~~~L~-~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~ 399 (406)
T PRK09295 331 -R-LGVIAFNLG-KHHAYDVGSFLD-NYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQ 399 (406)
T ss_pred -C-ceEEEEEEC-CcCHHHHHHHHH-hCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 3 457888874 567788888884 6699998875421 23579999987776554 4444443
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=302.75 Aligned_cols=339 Identities=18% Similarity=0.185 Sum_probs=272.7
Q ss_pred CcccccCCCCCChHHHHHHHccCCCC-----CCCC-----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNED-----YRSP-----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT 78 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~-----~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~ 78 (367)
.+|++..++.++|+.+++++.++... +++. ...+..+++|+.+++++|++++++|++++|+|+++..++.
T Consensus 33 ~iyLd~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~ 112 (424)
T PLN02855 33 LVYLDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEAINLVAY 112 (424)
T ss_pred eEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHH
Confidence 58999999999999999999875321 1211 1345578999999999999755569999999999999887
Q ss_pred c----cCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 79 N----TLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 79 ~----~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
+ .+.+||+|++++++|++.. |...++..|++++.++.+.++.+|++++++.++ +++++|++++++|+||.
T Consensus 113 ~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~----~~t~lv~i~~~~n~tG~ 188 (424)
T PLN02855 113 TWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLS----EKTKLVATHHVSNVLGS 188 (424)
T ss_pred HhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHhc----cCceEEEEeCccccccc
Confidence 5 3689999999999998764 666778889999999988777799999999997 47799999999999999
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCcee-
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF- 231 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~- 231 (367)
++|+++|.++|++ +|+++++|++|+.+..++++...++|++++|+||. .||.|+|++++++++++++.+.......
T Consensus 189 ~~~~~~I~~l~~~--~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~-~gp~G~G~l~~~~~~~~~~~p~~~g~~~~ 265 (424)
T PLN02855 189 ILPVEDIVHWAHA--VGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKM-CGPTGIGFLWGKSDLLESMPPFLGGGEMI 265 (424)
T ss_pred cCCHHHHHHHHHH--cCCEEEEEhhhhcCCcCCCchhcCCCEEEeecccc-cCCCccEEEEEchhhhhcCCCEecCCCce
Confidence 9999999999999 99999999999998888888888899999999995 5799999999999998887654322111
Q ss_pred ----ec---hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCC--
Q 017726 232 ----FD---WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKE-- 301 (367)
Q Consensus 232 ----~~---~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-- 301 (367)
.+ +.....+++.| |+++..++++.++++++.+.|++++.++..++++++++.|+++ |++++.+.+
T Consensus 266 ~~~~~~~~~~~~~~~r~e~G-----T~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~ 340 (424)
T PLN02855 266 SDVFLDHSTYAPPPSRFEAG-----TPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSE 340 (424)
T ss_pred eeeecCccccCCChhhccCC-----ChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccc
Confidence 01 11112344444 6999999999999999999999999999999999999999997 888887532
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC--------CCCcEEEEeecCCCCHHHHH
Q 017726 302 EWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK--------VAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~--------~~~~~iRi~~~~~~~~~~~~ 360 (367)
......++.|.++ +.+..++.+.|.+++||.++.|... ..+..+|||++.+++.+|+.
T Consensus 341 ~~~r~~~v~~~~~-~~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~ 406 (424)
T PLN02855 341 GVGRAALCAFNVE-GIHPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEVD 406 (424)
T ss_pred ccCcccEEEEEEC-CcCHHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHHH
Confidence 1123457888884 5678899999976679999977532 11357999998777765544
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=291.67 Aligned_cols=337 Identities=19% Similarity=0.204 Sum_probs=265.3
Q ss_pred ccccCC-CCCChHHHHHHHccCCCC-----CC-CCc----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHc
Q 017726 11 HLFVPG-PVHIPDQVIRAMNRNNED-----YR-SPA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN 79 (367)
Q Consensus 11 ~~~~~~-p~~~~~~v~~a~~~~~~~-----~~-~~~----~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~ 79 (367)
|++.++ +.+.|+.+.+++.+.... +. .+. ......++++.+++++|.+++++|++++|+++++.+++.+
T Consensus 2 yld~a~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~ 81 (376)
T TIGR01977 2 YFDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKG 81 (376)
T ss_pred CccCcccCCCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHh
Confidence 556555 446778888888764322 11 111 2367889999999999997665699999999999999999
Q ss_pred cCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHH
Q 017726 80 TLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLS 157 (367)
Q Consensus 80 ~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~ 157 (367)
++.+||+|++..++|.+.. +...++..|.+++.++.+.++.+|+++++++++ ++++++++++++||||.+.|++
T Consensus 82 ~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~----~~~~~v~~~~~~n~tG~~~~~~ 157 (376)
T TIGR01977 82 LLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIK----TNTKLIVVSHASNVTGTILPIE 157 (376)
T ss_pred ccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcC----CCCeEEEEECCCCCccccCCHH
Confidence 8899999999988887764 445677779999999988778899999999997 4679999999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCc-----eee
Q 017726 158 KVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR-----VFF 232 (367)
Q Consensus 158 ~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~-----~~~ 232 (367)
+|.++|++ +|+++++|+++++|..++++...++|++++|+|||+.||.|+|+++++++. .+.+..... ...
T Consensus 158 ~i~~l~~~--~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~--~~~~~~~~~~~~~~~~~ 233 (376)
T TIGR01977 158 EIGELAQE--NGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREGI--KLKPLKSGGTGSHSALI 233 (376)
T ss_pred HHHHHHHH--cCCEEEEEhhhccCccCCCchhcCCCEEEecccccccCCCCceEEEEcCCc--CcCceecCCCccccccc
Confidence 99999999 999999999999999988888889999999999999999999999988875 222222111 011
Q ss_pred c-hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEE
Q 017726 233 D-WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTA 310 (367)
Q Consensus 233 ~-~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~ 310 (367)
+ ......+++.+ |++...++++.++++++.+.|++.++++..++++++.+.|++. |+++..+.+......+++
T Consensus 234 ~~~~~~~~r~~~~-----t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~ 308 (376)
T TIGR01977 234 DQPSELPDRFESG-----TLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVS 308 (376)
T ss_pred cccccchhhccCC-----CCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEE
Confidence 1 01112344544 5888888999999999999999999999999999999999986 788876532223455788
Q ss_pred EEcCCCCCHHHHHHHHHhhCCeEEccCCCC----------CCCcEEEEeecCCCCHHHHHH
Q 017726 311 VIVPSHINSSEIVRRAWQRYNLSLGLGLNK----------VAGKVFRIGHLGHLNEVMFNF 361 (367)
Q Consensus 311 ~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~----------~~~~~iRi~~~~~~~~~~~~~ 361 (367)
|.+ .+.+..++.++|.+++||.+..|... ...+.||++++.+++++|+..
T Consensus 309 ~~~-~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~ 368 (376)
T TIGR01977 309 FTV-EGIDSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEK 368 (376)
T ss_pred EEE-CCCCHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHH
Confidence 888 46688899999987779999887532 245689999988887765543
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=293.88 Aligned_cols=325 Identities=15% Similarity=0.135 Sum_probs=262.9
Q ss_pred cccccCCCCCChHHHHHHHccCCCCCC----------CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHc
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNNEDYR----------SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN 79 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~~~~~----------~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~ 79 (367)
+|++.++++++|+.+++++.++...+. +..+.+..+++|+.+++++|.++. ++++++|+|++++.++.+
T Consensus 1 iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~v~~t~~~t~a~~~~l~~ 79 (364)
T PLN02651 1 LYLDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPK-EIIFTSGATESNNLAIKG 79 (364)
T ss_pred CcccCcCCCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEeCCHHHHHHHHHHH
Confidence 588999999999999999987542211 122356688999999999999764 599999999998877654
Q ss_pred ----cCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccc
Q 017726 80 ----TLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT 153 (367)
Q Consensus 80 ----~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~ 153 (367)
+..+|++|++++.+|++.. + ..++..|++++.++.+.++.+|+++++++++ ++++++++++++|+||.+
T Consensus 80 ~~~~~~~~g~~vl~~~~~h~s~~~~~-~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~----~~t~lv~v~~~~n~tG~~ 154 (364)
T PLN02651 80 VMHFYKDKKKHVITTQTEHKCVLDSC-RHLQQEGFEVTYLPVKSDGLVDLDELAAAIR----PDTALVSVMAVNNEIGVI 154 (364)
T ss_pred HHHhccCCCCEEEEcccccHHHHHHH-HHHHhcCCEEEEEccCCCCcCCHHHHHHhcC----CCcEEEEEECCCCCceec
Confidence 3578999999998888863 4 3334679999999988788899999999997 467999999999999999
Q ss_pred ccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeec
Q 017726 154 NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFD 233 (367)
Q Consensus 154 ~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 233 (367)
.|+++|.++||+ +|+++++|++|+.+..++++..+++|++++|+||| .||.|+|+++++++...++.+...... .
T Consensus 155 ~~l~~I~~~~~~--~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~-~gp~G~g~l~v~~~~~~~l~p~~~g~~-~- 229 (364)
T PLN02651 155 QPVEEIGELCRE--KKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKI-YGPKGVGALYVRRRPRVRLEPLMSGGG-Q- 229 (364)
T ss_pred ccHHHHHHHHHH--cCCEEEEEcchhhCCcccCcccCCCCEEEechhhh-CCCCceEEEEEcCCCCCCCCccccCCC-c-
Confidence 999999999999 99999999999999999999999999999999998 589999999999987666554322111 0
Q ss_pred hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-c-CCccccCC-CccCCCceEE
Q 017726 234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQK-EEWFSDTVTA 310 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~-~~~~~~~~~~ 310 (367)
..++ ..+|+++..++++.++++++.+. .+++.++..++++++.+.|++ . |++++.+. +..+...++.
T Consensus 230 ----~~~~-----~~GT~~~~~~~~l~~al~~~~~~-~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~ 299 (364)
T PLN02651 230 ----ERGR-----RSGTENTPLVVGLGAACELAMKE-MDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLN 299 (364)
T ss_pred ----cCCc-----cCCCccHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEE
Confidence 0122 35579999999999999999875 588999999999999999986 4 88888863 3334566888
Q ss_pred EEcCCCCCHHHHHHHHHhhCCeEEccCCCCC-------------------CCcEEEEeecCCCCHHHH
Q 017726 311 VIVPSHINSSEIVRRAWQRYNLSLGLGLNKV-------------------AGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 311 ~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~-------------------~~~~iRi~~~~~~~~~~~ 359 (367)
|.+ .+.+.+++.++|. + |.++.|..+. ..+.+|+|++.+++++|+
T Consensus 300 ~~~-~~~~~~~~~~~L~-~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~di 363 (364)
T PLN02651 300 LSF-AYVEGESLLMGLK-E--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEV 363 (364)
T ss_pred EEe-CCCCHHHHHHHhC-C--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHc
Confidence 888 4778889999994 3 8887775321 135799999889888875
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=292.42 Aligned_cols=330 Identities=21% Similarity=0.214 Sum_probs=260.1
Q ss_pred ccccCCCCCChHH-HHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhcCCCCceEEec-CChhHHHHHHHHccCCCCCe
Q 017726 11 HLFVPGPVHIPDQ-VIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIP-TTGTGAWESALTNTLSPGDR 86 (367)
Q Consensus 11 ~~~~~~p~~~~~~-v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~-~ggt~al~~~~~~~~~~gd~ 86 (367)
++|.|||..+++. |++++.+.... |+++.+.+.++++|+.+++++|.+++++++++ +|||++++.++.+++.+++.
T Consensus 14 ~~f~~Gp~~~~~~~v~~a~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~ 93 (378)
T PRK03080 14 PRFSSGPCKKRPGWQLEALADALLGRSHRQKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLLGARRV 93 (378)
T ss_pred CCcCCCCcCCChHHHHHHHHhhhcccCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcCCCCcc
Confidence 5699999999998 99999987654 88889999999999999999999765557776 48999999999998764333
Q ss_pred EEEEeCCcchHHHHH-HHHHhCC-ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHH
Q 017726 87 IISFLIGQFSLLWID-QQQRLNF-NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLD 164 (367)
Q Consensus 87 vl~~~~~~~~~~~~~-~~~~~g~-~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~ 164 (367)
+++. .+.|+.+|.. .++..|+ +++.++.+.++.+|++++ + .+++|.++|.+|.||.+.|+++|.+ +
T Consensus 94 ~vi~-~g~f~~~~~~~~~~~~g~~~v~~~~~~~g~~~d~~~i----~-----~~~~V~~~h~~t~tG~~~pi~~I~~--~ 161 (378)
T PRK03080 94 DHLA-WESFGSKWATDVVKQLKLEDPRVLEADYGSLPDLSAV----D-----FDRDVVFTWNGTTTGVRVPVARWIG--A 161 (378)
T ss_pred eEEE-eCHHHHHHHHHHHhhcCCCCceEeccCCCCCCCHhhc----C-----CCCCEEEEecCCccceeccchhhcc--c
Confidence 3333 4567777765 4467899 999999887777787763 2 1367999999999999999999988 6
Q ss_pred hcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCC---ceeechHH----H
Q 017726 165 EYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV---RVFFDWKD----Y 237 (367)
Q Consensus 165 ~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~---~~~~~~~~----~ 237 (367)
+ +|+++++|++|+++..++++.+ +|++++|+|||+++|+|+|+++++++.++++.+...+ ..++++.. .
T Consensus 162 ~--~g~~~vVDa~qs~G~~pidv~~--iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 237 (378)
T PRK03080 162 D--REGLTICDATSAAFALPLDWSK--LDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTPARPIPKFFRLTKGGKAI 237 (378)
T ss_pred c--CCCeEEEecccccccCCCCHHH--CcEEEEehhhhCCCCCceEEEEECHHHHHhhhcccCCCCCchhheeccchHHh
Confidence 6 8999999999999999999985 7999999999999999999999999999887764322 12333222 2
Q ss_pred HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHcC-CccccCCCccCCCceEEEEcCC
Q 017726 238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWG-LKNCTQKEEWFSDTVTAVIVPS 315 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~ 315 (367)
..+++.++ ++|+++..+.++.++++++.++ |++++.++.+++++++++.|++++ +.++.+.+..++..++.|++++
T Consensus 238 ~~~~~~~t--~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~ 315 (378)
T PRK03080 238 ENSFKGQT--INTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVD 315 (378)
T ss_pred hhhhcCCc--ccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCC
Confidence 23445454 7889999999999999999998 899999999999999999999984 6666543333565688888864
Q ss_pred ---CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 316 ---HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 316 ---~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
+. ..++...|.++ ++.++.|.....++.+|+|++++++.+|++
T Consensus 316 ~~~~~-~~~~~~~l~~~-~i~v~~g~~~~~~~~vRis~~~~~t~~di~ 361 (378)
T PRK03080 316 AQAAV-DAAAVAKLLRE-NGAVDIEPYRDAPNGLRIWCGPTVEPADVE 361 (378)
T ss_pred chHHH-HHHHHHHHHHc-CCeeccccccCCCCcEEEecCCCCCHHHHH
Confidence 22 33566777655 888876543323568999999888776554
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=289.02 Aligned_cols=343 Identities=18% Similarity=0.194 Sum_probs=269.1
Q ss_pred CcccccCCCCCChHHHHHHHccCCCC-----CCCC-----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNED-----YRSP-----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT 78 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~-----~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~ 78 (367)
.+|++..+..++|+.+++++.+.... +.+. ......+++|+.+++++|+++++++++++|+++++.+++.
T Consensus 19 ~~yld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~ 98 (403)
T TIGR01979 19 LVYLDSAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAY 98 (403)
T ss_pred eEEEeCccccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHH
Confidence 38999999999999999999875321 2111 2345688999999999999855569999999999998887
Q ss_pred cc----CCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 79 NT----LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 79 ~~----~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
++ +.+||.|++++++|++.. +...++..|++++.++.+.++.+|+++++++++ +++++|++++++|+||.
T Consensus 99 ~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~----~~~~lv~~~~~~~~tG~ 174 (403)
T TIGR01979 99 SWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLT----EKTKLVAITHVSNVLGT 174 (403)
T ss_pred HhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhc----cCCeEEEEEcccccccc
Confidence 63 578999999999988864 556677889999999998888899999999997 46799999999999999
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceee
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF 232 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~ 232 (367)
+.|+++|.++|++ +|+++++|++|+.+..++++...++|++++|+||++ ||.|+|++++++++++++.+........
T Consensus 175 ~~~~~~i~~~~~~--~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~-gp~G~g~l~~~~~~~~~~~~~~~g~~~~ 251 (403)
T TIGR01979 175 VNPVEEIAKLAHQ--VGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMY-GPTGIGVLYGKEELLEQMPPFLGGGEMI 251 (403)
T ss_pred cCCHHHHHHHHHH--cCCEEEEEchhhcCccccCccccCCCEEEEeccccc-CCCCceEEEEchHHHhcCCCeecCCCce
Confidence 9999999999999 999999999999988888888788999999999976 6999999999999887775432211000
Q ss_pred c--------hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCcc
Q 017726 233 D--------WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEW 303 (367)
Q Consensus 233 ~--------~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~ 303 (367)
+ +.....+++.| +++...++++.++++.+.+.|+++++++..++++++.+.|+++ |++++.+....
T Consensus 252 ~~~~~~~~~~~~~~~~~~~g-----t~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~ 326 (403)
T TIGR01979 252 AEVSFEETTYNEAPHKFEAG-----TPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAE 326 (403)
T ss_pred eecccCccccCCChhhcCCC-----CccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcc
Confidence 0 11111334433 5888899999999999988899999999999999999999987 88887753222
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC--------CCCcEEEEeecCCCCHH--HHHHhhhh
Q 017726 304 FSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK--------VAGKVFRIGHLGHLNEV--MFNFQLLF 365 (367)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~--------~~~~~iRi~~~~~~~~~--~~~~~~l~ 365 (367)
....++.|.++ +.+..++.+.|. +.||.++.|... ..+.++|||++.+++.+ +.+..+|+
T Consensus 327 ~~~~~v~~~~~-~~~~~~~~~~L~-~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~ 396 (403)
T TIGR01979 327 DRGGIISFNVE-GVHPHDVGTILD-EEGIAVRSGHHCAQPLMRRFGVPATCRASFYIYNTEEDIDALVEALK 396 (403)
T ss_pred ccCceEEEEeC-CcCHHHHHHHHh-hCCEEEcchhhhhHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHH
Confidence 33457778874 566778888886 559999876421 12467999987666544 44444443
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=281.44 Aligned_cols=331 Identities=15% Similarity=0.152 Sum_probs=262.3
Q ss_pred CcccccCCCCCChHHHHHHHccCC------------CCCCCCcHHHHHHHHHHHHHHHhcCCCC-ceEEecCChhHHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNN------------EDYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLIPTTGTGAWES 75 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~------------~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~v~~~~ggt~al~~ 75 (367)
+.++|.|||..+|++|++++.+.. ..|+++.+.+.++++++.++++++.++. +.+++++||+.+++.
T Consensus 3 ~~~l~~pGP~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea 82 (360)
T PRK05355 3 RVYNFSAGPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAM 82 (360)
T ss_pred ceeeccCCCCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHH
Confidence 578999999999999999998864 3577888999999999999999998543 444566788899999
Q ss_pred HHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHH-HHhccCCCCccEEEEEecCCCcccc
Q 017726 76 ALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLAS-KLAADTAHTIKAICIVHNETATGVT 153 (367)
Q Consensus 76 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~-~i~~~~~~~~~lv~~~~~~n~tG~~ 153 (367)
++.+++.+|+++++...+.|+.+|..+++..|.. ..+..+. .+..+..++++ +++ +++++|.++|..|+||..
T Consensus 83 ~~~nl~~~g~~~l~i~~G~fg~r~~~~a~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~----~~~~~V~~th~eTstGv~ 157 (360)
T PRK05355 83 VPMNLLGGGKKADYVDTGSWSKKAIKEAKKYGEV-NVAASSEDDGFTYIPPLDEWQLS----DDAAYVHYTSNETIDGTE 157 (360)
T ss_pred HHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCc-eEEecccccCCCCCCChhhccCC----CCCCEEEEccCCCcceEe
Confidence 9999999999999999999999999999999965 6666554 34445555555 665 357999999999999999
Q ss_pred c-cHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceee
Q 017726 154 N-NLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF 232 (367)
Q Consensus 154 ~-~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~ 232 (367)
. |+.++ +|+++++|+++++++.+++++++ |++++|+||++ ||+|+|+++++++.++++.+. . ..++
T Consensus 158 ~~~i~~i--------~g~l~vVDavss~g~~~idv~~~--d~~~~ssqK~l-gP~Glg~l~~s~~~l~~~~~~-~-~~~~ 224 (360)
T PRK05355 158 FHELPDT--------GDVPLVADMSSDILSRPIDVSKF--GLIYAGAQKNI-GPAGLTIVIVREDLLGRALPS-I-PSML 224 (360)
T ss_pred cCccccc--------CCCcEEEEcCccccCccCCHHHc--cEEEEeccccc-cCCceEEEEECHHHHhhcccC-C-ChHH
Confidence 8 66554 68999999999999999999865 69999999998 599999999999999887653 1 2344
Q ss_pred chHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHcCCc-cccCCCccCCCceEE
Q 017726 233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLK-NCTQKEEWFSDTVTA 310 (367)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g~~-~~~~~~~~~~~~~~~ 310 (367)
++..... ...+++||++..++++.++++++.++ |++++.++.+++++++++.|+++++. ... .+..+++.+++
T Consensus 225 ~~~~~~~----~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~-~~~~rs~~v~s 299 (360)
T PRK05355 225 DYKTHAD----NDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPV-APEDRSRMNVP 299 (360)
T ss_pred HHHHHHh----cCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCC-ChhhcCCcEEE
Confidence 4333221 12247899999999999999999999 79999999999999999999999742 222 22336767899
Q ss_pred EEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHH--HHHHhhhh
Q 017726 311 VIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV--MFNFQLLF 365 (367)
Q Consensus 311 ~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~--~~~~~~l~ 365 (367)
|.++++.+..++.+.+.+ .|+.+..+.. ..+.+|+|++++++.+ |.+.++|+
T Consensus 300 f~~~~~~~~~~~~~~~~~-~Gi~~~~~~~--~~g~vRiS~~~~nt~eei~~l~~~l~ 353 (360)
T PRK05355 300 FTLADEELDKKFLAEAKA-AGLVGLKGHR--SVGGMRASIYNAMPLEGVQALVDFMK 353 (360)
T ss_pred EEcCChHHHHHHHHHHHH-CCCcccCCCC--ccCcEEEECCCCCCHHHHHHHHHHHH
Confidence 998765444667677754 5999866653 2367999998887655 44444444
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=287.60 Aligned_cols=334 Identities=18% Similarity=0.195 Sum_probs=263.4
Q ss_pred CcccccCCCCCChHHHHHHHccCCCC-----CCCCc----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHc
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNED-----YRSPA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN 79 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~~----~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~ 79 (367)
.+|++++|+.++|+.+++++.+.... ...+. ..+..+++++.+++++|.+++ ++++++|+++++..++.+
T Consensus 18 ~~yl~~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~-~v~~~~~~t~~l~~~~~~ 96 (397)
T TIGR01976 18 RVFFDNPAGTQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPP-EVVFGANATSLTFLLSRA 96 (397)
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCC-eEEEeCCHHHHHHHHHHH
Confidence 48999999999999999999875421 11222 235678999999999999865 499999999998876655
Q ss_pred c---CCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccc
Q 017726 80 T---LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT 153 (367)
Q Consensus 80 ~---~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~ 153 (367)
+ +++||+|++.+++|++.. |...++..|++++.++.+. ++.+|+++++++++ +++++|++++++||||.+
T Consensus 97 ~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~----~~~~lv~i~~~~n~tG~~ 172 (397)
T TIGR01976 97 ISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLS----PRTRLVAVTAASNTLGSI 172 (397)
T ss_pred HHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcC----CCceEEEEeCCCCCCCcc
Confidence 4 689999999999988864 5566788899999999875 67889999999997 467999999999999999
Q ss_pred ccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeec
Q 017726 154 NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFD 233 (367)
Q Consensus 154 ~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 233 (367)
.|+++|.++|++ +|+++++|++|..+..++++.+.++|++++|+||++ |++ +|++++++++++++.+..... .
T Consensus 173 ~~~~~i~~~~~~--~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~-g~~-~G~l~~~~~~~~~l~~~~~~~-~-- 245 (397)
T TIGR01976 173 VDLAAITELVHA--AGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFF-GPH-MGILWGRPELLMNLPPYKLTF-S-- 245 (397)
T ss_pred CCHHHHHHHHHH--cCCEEEEehhhhccccCCCHHHcCCCEEEEechhhc-CCc-eEEEEEcHHHHhhCCCccccC-c--
Confidence 999999999999 999999999998887777777788999999999998 565 799999999988776543211 1
Q ss_pred hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC--------------hHHHHHHHHHHHHHHHHHHHHc-CCcccc
Q 017726 234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG--------------LENVIERHRRLGKATRLAVEAW-GLKNCT 298 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g--------------~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 298 (367)
+.....+++.| |+++..++++.++++.+.+.| ++++.++..++++++++.|+++ +++++.
T Consensus 246 ~~~~~~~~~~g-----t~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~ 320 (397)
T TIGR01976 246 YDTGPERFELG-----TPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYG 320 (397)
T ss_pred cCCCcchhcCC-----CCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence 11122345544 588888899999999988765 5677888899999999999998 588877
Q ss_pred CCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC-----------CCCcEEEEeecCCCCHHHHHH
Q 017726 299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK-----------VAGKVFRIGHLGHLNEVMFNF 361 (367)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~-----------~~~~~iRi~~~~~~~~~~~~~ 361 (367)
+.+......++.+.+ ++.+..++.++|.++ ||.++.+..+ ..+.++|||++.+++++|+..
T Consensus 321 ~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~ 392 (397)
T TIGR01976 321 VARLAARVPTVSFTV-HGLPPQRVVRRLADQ-GIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDR 392 (397)
T ss_pred CCCccCCCceEEEEe-CCcCHHHHHHHHHHC-CeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHH
Confidence 522222334666776 456778899999654 9999876321 234679999999888776554
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=283.22 Aligned_cols=336 Identities=19% Similarity=0.225 Sum_probs=267.5
Q ss_pred cccccCCCCCChHHHHHHHccCCCC-----CCC-----CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHc
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNNED-----YRS-----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN 79 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~-----~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~ 79 (367)
+|++..+-.++|+.+++++.++... +++ +...+...++++.+++++|.++++++++++|+++++..++.+
T Consensus 1 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~ 80 (373)
T cd06453 1 VYLDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYG 80 (373)
T ss_pred CcccCccccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHH
Confidence 4778888889999999999876311 221 234567889999999999998445699999999999999988
Q ss_pred cCC---CCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc
Q 017726 80 TLS---PGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN 154 (367)
Q Consensus 80 ~~~---~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~ 154 (367)
+.. +|++|++++++|++.. +...++..|++++.++.+.++.+|++++++++. +++++|++++++||||.+.
T Consensus 81 l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~~~tG~~~ 156 (373)
T cd06453 81 LGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLT----ERTKLVAVTHVSNVLGTIN 156 (373)
T ss_pred hhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhc----CCceEEEEeCcccccCCcC
Confidence 776 8999999999888853 445666789999999998788899999999997 4679999999999999999
Q ss_pred cHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceee--
Q 017726 155 NLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF-- 232 (367)
Q Consensus 155 ~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~-- 232 (367)
|+++|.++|++ +|+++++|++++.+..++++...++|++++|+||++++ .|+|++++++++++++.+........
T Consensus 157 ~~~~i~~~~~~--~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~-~g~g~~~~~~~~~~~~~~~~~g~~~~~~ 233 (373)
T cd06453 157 PVKEIGEIAHE--AGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKMLGP-TGIGVLYGKEELLEEMPPYGGGGEMIEE 233 (373)
T ss_pred CHHHHHHHHHH--cCCEEEEEhhhhcCceeeeccccCCCEEEeccccccCC-CCcEEEEEchHHhhcCCCeecCCCcccc
Confidence 99999999999 99999999999988888887777899999999999975 88999999999988877543221110
Q ss_pred ------chHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCC
Q 017726 233 ------DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFS 305 (367)
Q Consensus 233 ------~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~ 305 (367)
.+.....+ +...+++...++++.++++++.+.|++++.++..++++++++.|+++ +++++.+. . ..
T Consensus 234 ~~~~~~~~~~~~~~-----~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~-~~ 306 (373)
T cd06453 234 VSFEETTYADLPHK-----FEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDA-E-DR 306 (373)
T ss_pred ccccccccCCCccc-----cCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCc-c-cc
Confidence 01111111 22346888888999999999999999999999999999999999998 77877432 1 23
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC--------CCcEEEEeecCCCCHHHHHH
Q 017726 306 DTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV--------AGKVFRIGHLGHLNEVMFNF 361 (367)
Q Consensus 306 ~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~--------~~~~iRi~~~~~~~~~~~~~ 361 (367)
..+++|.++ +.+..++.++|.+ +||.+.+|.... .+.++|+++...++++|+++
T Consensus 307 ~~~~~~~~~-~~~~~~i~~~l~~-~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~ 368 (373)
T cd06453 307 AGVVSFNLE-GIHPHDVATILDQ-YGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDA 368 (373)
T ss_pred CCeEEEEEC-CcCHHHHHHHHHH-CCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHH
Confidence 457788874 5677899999965 599998765321 24679999887777666554
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=268.92 Aligned_cols=326 Identities=17% Similarity=0.179 Sum_probs=263.5
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCCC---------CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHc
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDYR---------SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN 79 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~---------~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~ 79 (367)
.+|+++...+++.++|+++|..+....+ +.......++.|+.+|+++|+++ ++|+||+|||+++++++.+
T Consensus 2 miYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~-~eIiFTSG~TEsnNlaI~g 80 (386)
T COG1104 2 MIYLDNAATTPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADP-EEIIFTSGATESNNLAIKG 80 (386)
T ss_pred cccccccccCCCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCC-CeEEEecCCcHHHHHHHHh
Confidence 4789999999999999999998654321 12345778999999999999998 4599999999999999876
Q ss_pred c--C----CCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 80 T--L----SPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 80 ~--~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
. . ..|.+++++.-+|++.. .....+..|+++.+++++.+|.+|+|+|+++|. ++|.+|.+.+.||-+|+
T Consensus 81 ~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~----~~T~LVSim~aNnE~G~ 156 (386)
T COG1104 81 AALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALR----PDTILVSIMHANNETGT 156 (386)
T ss_pred hHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcC----CCceEEEEEecccCeee
Confidence 2 1 25779999999999975 333446679999999999999999999999999 46799999999999999
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceee
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF 232 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~ 232 (367)
+.|+++|.++|++ +++++++|++|++|-.++++...++|++++|+||. .||.|+|.++.++.. ++.+...++.
T Consensus 157 IQpI~ei~~i~k~--~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK~-~GpkGiGaLyv~~~~--~~~p~i~GGg-- 229 (386)
T COG1104 157 IQPIAEIGEICKE--RGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHKF-GGPKGIGALYVRPGV--RLEPLIHGGG-- 229 (386)
T ss_pred cccHHHHHHHHHH--cCCeEEEehhhhcCceeccccccCcceEEeehhhc-cCCCceEEEEECCCC--ccCceeccCc--
Confidence 9999999999999 99999999999999999999998999999999995 489999999997765 3333222111
Q ss_pred chHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCCceEE
Q 017726 233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTA 310 (367)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~ 310 (367)
+...++ ++|.|+.+++++..|++...+. ++...++...++++|.+.|.+. ++.+.. ++..+.++++.
T Consensus 230 ----QE~g~R-----sGTenv~~Ivg~~~A~~~a~~~-~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g-~~~~rlP~~~~ 298 (386)
T COG1104 230 ----QERGLR-----SGTENVPGIVGFGKAAEIAVEE-LEEENARLRKLRDRLEDGLLEIIPDVYLNG-DDEPRLPNILN 298 (386)
T ss_pred ----CCCCCC-----CCCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcEEEcC-CcccCCCCeEE
Confidence 111223 4469999999999999998776 7788889999999999999986 444444 33557888888
Q ss_pred EEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCC-------------------cEEEEeecCCCCHHHH
Q 017726 311 VIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAG-------------------KVFRIGHLGHLNEVMF 359 (367)
Q Consensus 311 ~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~-------------------~~iRi~~~~~~~~~~~ 359 (367)
|.+ .++..+.+...| +..||++..|..+..+ ..+|+|+.-..+++|+
T Consensus 299 ~~f-~gv~gE~ll~~L-~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei 364 (386)
T COG1104 299 FSF-PGVEGESLLLAL-DLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEI 364 (386)
T ss_pred EEe-CCCcHHHHHHhc-cccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHH
Confidence 998 578888888888 4569999998764322 4699997555555443
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=274.50 Aligned_cols=330 Identities=18% Similarity=0.216 Sum_probs=258.2
Q ss_pred cccccCCCCCChHHHHHHHccCC-----CCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEec-CChhHHHHHHHHccCCC
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNN-----EDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIP-TTGTGAWESALTNTLSP 83 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~-----~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~-~ggt~al~~~~~~~~~~ 83 (367)
.--|.|||..++++|++++.+.. .+|+++.+.+.++++|+.++++++++++++|+|+ +|||.+++.++.+++.+
T Consensus 4 ~~~f~pGP~~~~~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~~ 83 (361)
T TIGR01366 4 DGRFGSGPSKVRLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLIEK 83 (361)
T ss_pred CCcccCCCcCCCHHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcccc
Confidence 34589999999999999998752 4689999999999999999999999765567775 67999999999988643
Q ss_pred CCeEEEEeCCcchHHHHHHHHHh--CCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHH
Q 017726 84 GDRIISFLIGQFSLLWIDQQQRL--NFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRK 161 (367)
Q Consensus 84 gd~vl~~~~~~~~~~~~~~~~~~--g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~ 161 (367)
++++...+.|+.++...++.. +.++..++.+.+..++. .+. +++++|+++|.+|.||.+.|+++|
T Consensus 84 --~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~lV~~~h~et~tG~~~pi~~I-- 150 (361)
T TIGR01366 84 --KSLHLSFGEFSSKFAKAVKLAPWLGEPIIVTADPGSAPEP-----QAD----PGVDVIAWAHNETSTGVAVPVRRP-- 150 (361)
T ss_pred --cccEEecCHHHHHHHHHHHhhhccCCceEEecCCCCCCCC-----ccC----CCCCEEEEcccCCccceecccccc--
Confidence 344444677887776767652 23677777665443333 223 578999999999999999999887
Q ss_pred HHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCc----eeechHHH
Q 017726 162 LLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR----VFFDWKDY 237 (367)
Q Consensus 162 ~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 237 (367)
+|+ +|+++++|+++++++.+++++. +|++++|+||++++++|+++++++++.++++.+..... .++++...
T Consensus 151 -~~~--~g~~~iVDavqs~g~~~idv~~--~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~ 225 (361)
T TIGR01366 151 -EGS--DDALVVIDATSGAGGLPVDIAE--TDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTA 225 (361)
T ss_pred -ccc--CCCeEEEEcCccccCCCCCHHH--CCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCchhhhHHHH
Confidence 577 9999999999999999999884 89999999999987888899999999998887544321 24444443
Q ss_pred HH-HhhcCCccCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHcC-CccccCCCccCCCceEEEEcC
Q 017726 238 IK-FYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWG-LKNCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 238 ~~-~~~~~~~~~~~~~~~~~~al~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~ 314 (367)
.. .++.++ ++|+++..++++.++++++.++ |++.+.++.+++++++++.|++++ ++++.......+..+..+.++
T Consensus 226 ~~~~~~~~t--~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~ 303 (361)
T TIGR01366 226 VDNSLKNQT--YNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFV 303 (361)
T ss_pred HhccccCCC--CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECC
Confidence 32 223343 8899999999999999999998 599999999999999999999985 565543222233344555556
Q ss_pred CCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 315 SHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 315 ~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
++.+.+++.+.|.+ +||.+.++.....+..+|||.+++++.+|+.
T Consensus 304 ~g~~~~~v~~~L~~-~gI~i~~~~~~l~~~~vRis~~~~~t~~di~ 348 (361)
T TIGR01366 304 DDIDAATVAKILRA-NGIVDTEPYRKLGRNQLRVAMFPAIDPDDVE 348 (361)
T ss_pred CccCHHHHHHHHHH-CCCeeccCccccCCCcEEEEcCCCCCHHHHH
Confidence 78899999999965 4999988776666678999999988766554
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=278.90 Aligned_cols=327 Identities=16% Similarity=0.152 Sum_probs=255.1
Q ss_pred cccccCCCCCChHHHHHHHccCCCC-----CCC----CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNNED-----YRS----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT 80 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~----~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~ 80 (367)
+|++.++.+++|+.+++++.++... +.. ..+.+..+++|+.+++++|++++ ++++++|+|+++..++.++
T Consensus 1 ~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~i~~t~~~t~a~~~al~~~ 79 (379)
T TIGR03402 1 IYLDNNATTRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPD-EIIFTSGGTESDNTAIKSA 79 (379)
T ss_pred CcCCCcCCCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEeCcHHHHHHHHHHHH
Confidence 4788999999999999999875321 111 22356788999999999999754 5999999999999888764
Q ss_pred C---CCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccH
Q 017726 81 L---SPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL 156 (367)
Q Consensus 81 ~---~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~ 156 (367)
. .+++.|++...+|++.. ....++..|++++.++.+.++.+|+++++++++ ++++++++++++|+||.++|+
T Consensus 80 ~~~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~----~~~~lv~i~~~~n~tG~~~~~ 155 (379)
T TIGR03402 80 LAAQPEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAIT----DDTALVSVMWANNETGTIFPI 155 (379)
T ss_pred HHhcCCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcC----CCcEEEEEEcccCCeeecccH
Confidence 3 45688888888888764 224445579999999988778899999999997 467999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHH
Q 017726 157 SKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 157 ~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (367)
++|.++|++ +|+++++|++|+.+..++++...++|++++|+|| +.||.|+|+++++++. .+.+..... ..
T Consensus 156 ~~I~~l~~~--~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K-~~gp~G~g~l~v~~~~--~~~p~~~g~-~~---- 225 (379)
T TIGR03402 156 EEIGEIAKE--RGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHK-LHGPKGVGALYIRKGT--RFRPLLRGG-HQ---- 225 (379)
T ss_pred HHHHHHHHH--cCCEEEEECcccccccccCcccCCCCEEEEcHHH-cCCCCceEEEEECCCC--CCCCcccCC-cc----
Confidence 999999999 9999999999999999999988899999999999 5689999999998764 222221110 00
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-c-CCccccCCCccCCCceEEEEcC
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~ 314 (367)
.... ..+|+++..+.++.++++.+.+. ++++.++..++++++.+.|++ + ++.+..+.. .+.+.++.|.+
T Consensus 226 -~~~~-----~~gt~~~~~~~~l~~al~~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~- 296 (379)
T TIGR03402 226 -ERGR-----RAGTENVPGIVGLGKAAELATEH-LEEENTRVRALRDRLEAGLLARIPDARLNGDPT-KRLPNTVNISF- 296 (379)
T ss_pred -CCCc-----CCCCccHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCc-cCCCCEEEEEe-
Confidence 0111 24569999999999999998764 788889999999999999986 6 777766432 23334666766
Q ss_pred CCCCHHHHHHHHHhhCCeEEccCCCCCC-------------------CcEEEEeecCCCCHHHHHH
Q 017726 315 SHINSSEIVRRAWQRYNLSLGLGLNKVA-------------------GKVFRIGHLGHLNEVMFNF 361 (367)
Q Consensus 315 ~~~~~~~l~~~L~~~~gv~v~~g~~~~~-------------------~~~iRi~~~~~~~~~~~~~ 361 (367)
.+.+..++.+.|. ++||.++.|..+.. .+.+|+|++.+++++|++.
T Consensus 297 ~~~~~~~~~~~l~-~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~ 361 (379)
T TIGR03402 297 EYIEGEAILLLLD-MEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDY 361 (379)
T ss_pred cCCCHHHHHHhhc-cCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHH
Confidence 4567889999885 55999998754211 3579999988887766543
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=277.01 Aligned_cols=326 Identities=14% Similarity=0.154 Sum_probs=253.7
Q ss_pred cccccCCCCCChHHHHHHHccCCCC-----CCC----CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNNED-----YRS----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT 80 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~----~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~ 80 (367)
+|++.++.+++|+.+++++.++... ... .......+++|+.+++++|.+++ +|++++|+++++..++.++
T Consensus 2 ~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~i~~~~g~t~a~~~~~~~~ 80 (381)
T PRK02948 2 IYLDYAATTPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQ-GIYFTSGGTESNYLAIQSL 80 (381)
T ss_pred EeccCCCCCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEeCcHHHHHHHHHHHH
Confidence 6889999999999999999764421 111 12346688999999999998764 5999999999999887765
Q ss_pred C----CCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc
Q 017726 81 L----SPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN 155 (367)
Q Consensus 81 ~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~ 155 (367)
+ .+|+.|++...+|+++. +...++..|+++..++.+.++.+|+++++++++ +++++|++++++||||.+.|
T Consensus 81 ~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~----~~~~lv~~~~~~n~tG~~~~ 156 (381)
T PRK02948 81 LNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAIT----PDTVLASIQHANSEIGTIQP 156 (381)
T ss_pred HHhccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhcC----CCCEEEEEECCcCCcEeehh
Confidence 4 57899999888888864 335667789999999998778899999999987 46799999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechH
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (367)
+++|.++|++ +|+++++|++++++..++++..+++|++++|+||++ ||+|+|+++++++. .+.......
T Consensus 157 ~~~I~~l~~~--~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~~-gp~G~G~l~~~~~~--~~~~~~~~~------ 225 (381)
T PRK02948 157 IAEIGALLKK--YNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIY-GPKGVGAVYINPQV--RWKPVFPGT------ 225 (381)
T ss_pred HHHHHHHHHH--cCCEEEEEChhhccccccCcccCCCCEEEecHHhcC-CCCcEEEEEEcCCC--CCCCcccCC------
Confidence 9999999999 999999999999998888888889999999999976 69999999998774 111110000
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCC-CccCCCceEEEEcC
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK-EEWFSDTVTAVIVP 314 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~~~ 314 (367)
...+.+.+++++...++++.++++.+.+. +++++++..++++++.+.|+++|+++.... .......++.|.+
T Consensus 226 -----~~~~~~~~~t~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~i~~~~~- 298 (381)
T PRK02948 226 -----THEKGFRPGTVNVPGIAAFLTAAENILKN-MQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTI- 298 (381)
T ss_pred -----CCCCCcCCCCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCccCcCCEEEEEe-
Confidence 01122346789999999999999887653 788899999999999999999887655432 2223344566666
Q ss_pred CCCCHHHHHHHHHhhCCeEEccCCCCC-------------------CCcEEEEeecCCCCHHHH
Q 017726 315 SHINSSEIVRRAWQRYNLSLGLGLNKV-------------------AGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 315 ~~~~~~~l~~~L~~~~gv~v~~g~~~~-------------------~~~~iRi~~~~~~~~~~~ 359 (367)
++.+.+++.+.|. ++||.++.|..+. .+..+|||+..+++++|+
T Consensus 299 ~~~~~~~~~~~l~-~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di 361 (381)
T PRK02948 299 KGIEGQYTMLECN-RRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQI 361 (381)
T ss_pred CCCCHHHHHHhcc-cCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHH
Confidence 4567788888884 5599999765311 135799998766665543
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=267.21 Aligned_cols=331 Identities=20% Similarity=0.218 Sum_probs=267.4
Q ss_pred cccCCCCCChHH-HHHHHccCC--CCCCCCcHHHHHHHHHHHHHHHhcCCCC-ceEEecCChhHHHHHHHHccC-CCCCe
Q 017726 12 LFVPGPVHIPDQ-VIRAMNRNN--EDYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLIPTTGTGAWESALTNTL-SPGDR 86 (367)
Q Consensus 12 ~~~~~p~~~~~~-v~~a~~~~~--~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~v~~~~ggt~al~~~~~~~~-~~gd~ 86 (367)
.|+|||..+.+. ..+++.+.. .+|+++.+.+++.++++.++++++.+.. +.+++++|||.++++++.+++ .+|++
T Consensus 6 ~f~~gp~~~~~~~~~~~~~~~~~~~~HRs~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~ 85 (374)
T TIGR01365 6 CFSSGPCAKRPGWSIEELKNAPLGRSHRSKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVD 85 (374)
T ss_pred CcCCCccCCCchhhHHHHhhhhcccCcCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCe
Confidence 499999999887 788887643 4599999999999999999999998643 446779999999999999988 58888
Q ss_pred EEEEeCCcchHHHH-HHHHHhCC-ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHH
Q 017726 87 IISFLIGQFSLLWI-DQQQRLNF-NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLD 164 (367)
Q Consensus 87 vl~~~~~~~~~~~~-~~~~~~g~-~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~ 164 (367)
+++. +.|+.+|. .+++..|+ ++..+..+.+..+|+++++. + +.|+++|..++||+..|++++. +
T Consensus 86 vLv~--g~FG~r~~~eia~~~g~~~v~~l~~~~g~~~~~~~ve~--~-------~~v~~vhnETSTGv~npv~~i~---~ 151 (374)
T TIGR01365 86 VLAW--ESFGKGWVTDVTKQLKLPDVRVLEAEYGKLPDLKKVDF--K-------NDVVFTWNGTTSGVRVPNGDFI---P 151 (374)
T ss_pred EEEE--CHHHHHHHHHHHHhcCCCCcEEEcCCCCCCCCHHHcCC--C-------CCEEEecCCCchheeccccccc---c
Confidence 8874 58999987 99999999 58888887777889999872 1 2378999999999999987555 3
Q ss_pred hcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCC---ceeechHHH---H
Q 017726 165 EYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV---RVFFDWKDY---I 238 (367)
Q Consensus 165 ~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~ 238 (367)
+. +++++++|+.+++++.+++++ ++|+++++++|++++|+|+++++++++.+++....... ..++++... .
T Consensus 152 ~~-~~~lliVDavSs~g~~~l~~d--~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~ 228 (374)
T TIGR01365 152 AD-REGLTICDATSAAFAQDLDYH--KLDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLN 228 (374)
T ss_pred cc-CCCcEEEEccchhcCCCCChh--HCcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhhccccccchh
Confidence 22 478999999999999999998 49999999999999999999999999999886643210 011221111 1
Q ss_pred HHhhcCCccCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHcC-CccccCCCccCCCceEEEEcCCC
Q 017726 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWG-LKNCTQKEEWFSDTVTAVIVPSH 316 (367)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 316 (367)
..+..+ ++++||++..+.++..+++++.++ |++.+.+++.++++.+++.++++| +.+...++..+++.++.+.++.+
T Consensus 229 ~~~~~~-~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~ 307 (374)
T TIGR01365 229 KKIFEG-STINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDP 307 (374)
T ss_pred hhhhcC-CCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCc
Confidence 111222 468999999999999999999886 799999999999999999999998 77766445557888888887543
Q ss_pred -C-----C-----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHH
Q 017726 317 -I-----N-----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNF 361 (367)
Q Consensus 317 -~-----~-----~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~ 361 (367)
+ + .+++.+.|+++ ||.+.+|.....+..||||.++..+.+|+..
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~-gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~ 362 (374)
T TIGR01365 308 AIDALDEDAQADFAKELISTLEKE-GVAYDIGSYRDAPSGLRIWCGATVEKSDLEC 362 (374)
T ss_pred cccccccchhhHHHHHHHHHHHHC-CEEEeccccccCCCceEEecCCcCCHHHHHH
Confidence 4 3 67899999765 9999999888778899999999988877654
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=269.85 Aligned_cols=327 Identities=13% Similarity=0.100 Sum_probs=249.1
Q ss_pred cccccCCCCCChHHHHHHHccCCCC-----CCCCc----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNNED-----YRSPA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT 80 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~~----~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~ 80 (367)
+|++.++.+++++.|++++.++... +.... .....++.++.+++.++..++++|++|+|+++++..++.++
T Consensus 1 ~yld~aa~~~~~~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~ 80 (382)
T TIGR03403 1 VYLDNNATTMLDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGV 80 (382)
T ss_pred CcccCcCCCCCCHHHHHHHHHHHHhcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHH
Confidence 4788899999999999999885432 11111 12334455555565666644456999999999999988764
Q ss_pred C-----CC-CCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccc
Q 017726 81 L-----SP-GDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT 153 (367)
Q Consensus 81 ~-----~~-gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~ 153 (367)
. .+ +++|+++..+|+++. ....++..|++++.++.+.++.+|+++++++++ ++++++++++++||||.+
T Consensus 81 ~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i~----~~t~lv~~~~~~n~tG~~ 156 (382)
T TIGR03403 81 YFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQGTITAEQVREAIT----EKTALVSVMWANNETGMI 156 (382)
T ss_pred HHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCCHHHHHHhcc----cCCeEEEEEcccCCCccc
Confidence 2 45 467999988888765 334567789999999998888899999999997 467999999999999999
Q ss_pred ccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeec
Q 017726 154 NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFD 233 (367)
Q Consensus 154 ~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 233 (367)
.|+++|.++|++ +|+++++|++++.+..++++..+++|++++|+||++ ||+|+|++++++.. .+.+........
T Consensus 157 ~~~~~I~~la~~--~g~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~-gp~G~g~l~vr~~~--~~~p~~~g~~~~- 230 (382)
T TIGR03403 157 FPIKEIGEICKE--RGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFH-GPKGVGGLYIRKGV--ELTPLFHGGEHM- 230 (382)
T ss_pred cCHHHHHHHHHH--cCCEEEEechhhcCCCccCccccCCCEEEEcchhhC-CCCceEEEEECCCC--CCCCcccCCCCC-
Confidence 999999999999 999999999999998888888889999999999975 79999999998764 222211110000
Q ss_pred hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEE
Q 017726 234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVI 312 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 312 (367)
..+.+++++...++++..+++...+. ++.+.++..++++++.+.|+++ |+.+..+.. .+.+.++.|.
T Consensus 231 ----------~~~~~gt~~~~~~~al~~al~~~~~~-~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~ 298 (382)
T TIGR03403 231 ----------GGRRSGTLNVPYIVAMGEAMRLANEY-LDFEKSHVRRLRDRLEDALLELPDVFVVGDRE-HRVPNTILIS 298 (382)
T ss_pred ----------CCcccCCcChHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHhcCCCEEEECCCC-CCcCCEEEEE
Confidence 11225679999999999999877664 7888899999999999999987 788877532 2444466777
Q ss_pred cCCCCCHHHHHHHHHhhCCeEEccCCCC-------------------CCCcEEEEeecCCCCHHHHH
Q 017726 313 VPSHINSSEIVRRAWQRYNLSLGLGLNK-------------------VAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 313 ~~~~~~~~~l~~~L~~~~gv~v~~g~~~-------------------~~~~~iRi~~~~~~~~~~~~ 360 (367)
+ ++.+..++.+.|. ++||.++.|..+ ..++.+|+|++.+++.+|++
T Consensus 299 ~-~~~~~~~~~~~L~-~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did 363 (382)
T TIGR03403 299 I-KGVEGEAMLWDLN-KAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEID 363 (382)
T ss_pred e-CCCCHHHHHHhhc-cCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHH
Confidence 7 5778888888885 559999976432 11356999998887766544
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=266.83 Aligned_cols=331 Identities=18% Similarity=0.183 Sum_probs=246.2
Q ss_pred ccccCCCCCChHHHHHHHccCC------------CCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCC-hhHHHHHHH
Q 017726 11 HLFVPGPVHIPDQVIRAMNRNN------------EDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTT-GTGAWESAL 77 (367)
Q Consensus 11 ~~~~~~p~~~~~~v~~a~~~~~------------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g-gt~al~~~~ 77 (367)
++|.|||..+|+.|++++.++. ..+++..+.+.++++|+.+++++|++.++.++|++| +|++++.++
T Consensus 1 ~~~~pGp~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~ 80 (355)
T cd00611 1 INFSAGPAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVP 80 (355)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHH
Confidence 4699999999999999998875 234556677899999999999999866566888877 999999999
Q ss_pred HccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCC-C-HHHHHHHHhccCCCCccEEEEEecCCCcccccc
Q 017726 78 TNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGA-K-LDVLASKLAADTAHTIKAICIVHNETATGVTNN 155 (367)
Q Consensus 78 ~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-d-~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~ 155 (367)
.+++.++++......+.|+.++..+++..|++++.++.+.++.. + ++..+..++ +++++|.++|.+|.||...+
T Consensus 81 ~~l~~~~~~~~~i~~g~~~~~~~~~a~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~lV~~~h~~t~tG~~~~ 156 (355)
T cd00611 81 LNLLGDKGTADYVVTGAWSAKAAKEAKRYGGVVVIVAAKEEGKYTKIPDVETWDLA----PDAAYVHYCSNETIHGVEFD 156 (355)
T ss_pred HhcCCCCCeEEEEECCHHHHHHHHHHHhcCCCcEEEecccccCCCCCCCHhhcCCC----CCCCEEEEeCCcccccEEcc
Confidence 99877555544444566777777788999999999998654333 4 222223333 57899999999999999843
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechH
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (367)
++++. +|+++++|+++++++.++|+.+++ ++++|+||++ ||+|+|+++++++.++++.+.. + ...++.
T Consensus 157 -----~i~~~--~g~~~~VDa~qs~g~~~idv~~~~--~~~ss~~K~l-GP~G~g~l~~~~~~~~~~~~~~-~-~~~~~~ 224 (355)
T cd00611 157 -----EVPDT--GGVPLVADMSSNILSRPIDVSKFG--VIYAGAQKNL-GPAGVTVVIVRKDLLGKARKIT-P-SMLNYK 224 (355)
T ss_pred -----eeccc--CCCeEEEEccccccCCCCCHHHhC--EEEeeccccc-CCCceEEEEECHHHHhhcccCC-C-CcccHH
Confidence 45666 899999999999999999998755 5667799987 6999999999999998876532 1 122222
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEc
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV 313 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~ 313 (367)
.... .+ .+++||++..++++.++++++.++ |++.+.++.+++++++++.|+++ |+.....++..+++.++.|++
T Consensus 225 ~~~~---~~-~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~ 300 (355)
T cd00611 225 THAD---NN-SLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRL 300 (355)
T ss_pred HHHh---cC-CCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEc
Confidence 1111 12 136789999999999999999999 79999999999999999999999 853122122235656688887
Q ss_pred CCCC-CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH--HHhhhh
Q 017726 314 PSHI-NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF--NFQLLF 365 (367)
Q Consensus 314 ~~~~-~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~--~~~~l~ 365 (367)
+ +. ...++...+. +.|+.+.++.. ..+.+|+|++.+++.+|+ +.++|+
T Consensus 301 ~-~~~l~~~~~~~~~-r~G~~~~~~~~--~~g~vR~S~~~~nt~edi~~l~~al~ 351 (355)
T cd00611 301 G-KEELEKEFLKEAE-AAGMIGLKGHR--SVGGIRASIYNALSLEGVQALADFMK 351 (355)
T ss_pred C-ChhhhHHHHHHHH-HCCCcccCCCc--ccCeEEEEccCCCCHHHHHHHHHHHH
Confidence 4 42 1244445554 45887555543 235799999887776554 444444
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=270.32 Aligned_cols=325 Identities=18% Similarity=0.139 Sum_probs=241.8
Q ss_pred CcccccCCCC--CChHHHHHHHccCCCCCC-CCcHHHHHHHHHHHHHHHhcC------CCCceEEecCChhHHHHHHHHc
Q 017726 9 KNHLFVPGPV--HIPDQVIRAMNRNNEDYR-SPAVPALTKTLLEDIKKIFKT------TSGTPFLIPTTGTGAWESALTN 79 (367)
Q Consensus 9 ~~~~~~~~p~--~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~------~~~~~v~~~~ggt~al~~~~~~ 79 (367)
..+.++-|-+ +.|+.+.+++.+...... .|....+..++|+.+++++.. +++++|++|+|+++|+..++.+
T Consensus 29 ~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a 108 (393)
T COG0436 29 DVIDLSIGEPDFPTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLA 108 (393)
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHH
Confidence 4667777655 778888888888544321 232456666777777766542 2445599999999999999999
Q ss_pred cCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCC---CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc-
Q 017726 80 TLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESD---WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN- 155 (367)
Q Consensus 80 ~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~- 155 (367)
+++|||+|++++|.|.++. ...+..|.+++.+++. .++.+|+++++++++ ++||+|++++||||||.+++
T Consensus 109 ~~~pGDeVlip~P~Y~~y~--~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~----~ktk~i~ln~P~NPTGav~~~ 182 (393)
T COG0436 109 LLNPGDEVLIPDPGYPSYE--AAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAIT----PKTKAIILNSPNNPTGAVYSK 182 (393)
T ss_pred hcCCCCEEEEeCCCCcCHH--HHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcC----ccceEEEEeCCCCCcCcCCCH
Confidence 9999999999999888764 5577889999999974 378999999999999 57899999999999999996
Q ss_pred --HHHHHHHHHhcCCCcEEEEeeeeccCcee----e---cccc-ccceEEEecCCCcccCCCc--ceeeeeC-HHHHHHh
Q 017726 156 --LSKVRKLLDEYRHPALFLVDGVSSICAID----F---RMDE-WGIDVALTGSQKALSLPTG--MGIVCAS-PKALEAS 222 (367)
Q Consensus 156 --~~~i~~~~~~~~~~~~vi~D~~~~~~~~~----~---~~~~-~~~d~~~~s~~K~~~g~~g--~g~~~~~-~~~~~~~ 222 (367)
+++|.++|++ ||++||+|++|...... . .... ...-+.+.|+||.++ .+| +|+++++ +++++.+
T Consensus 183 ~~l~~i~~~a~~--~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~-mtGwRvG~~v~~~~~l~~~~ 259 (393)
T COG0436 183 EELKAIVELARE--HDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYG-MTGWRIGWVVGPPEELIAAL 259 (393)
T ss_pred HHHHHHHHHHHH--cCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEeccccccc-ccccceeEeecChHHHHHHH
Confidence 6778888998 99999999998754332 1 1111 135688889999995 666 6999999 7676666
Q ss_pred ccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHc-CCcccc-C
Q 017726 223 KTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFE-EGLENVIERHRRLGKATRLAVEAW-GLKNCT-Q 299 (367)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~-~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~ 299 (367)
..... .. ...++.....+..++|+.-.+ ..++.+++.++++++.+.+.|.+. |+.+.. |
T Consensus 260 ~~~~~----------------~~--~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p 321 (393)
T COG0436 260 RKLKS----------------YL--TSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPP 321 (393)
T ss_pred HHHHH----------------hc--ccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCC
Confidence 52211 11 112455444445555554322 226677788999999999999998 688887 5
Q ss_pred CCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCC---CcEEEEeecCCCCHHHHHHhhh
Q 017726 300 KEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVA---GKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~---~~~iRi~~~~~~~~~~~~~~~l 364 (367)
.+.++++.+++...+..+++++|.+++||.+.||..+.. .+++|+|+....+..+...++|
T Consensus 322 ----~Ga~Y~~~~i~~~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~~~~~l~~a~~rl 385 (393)
T COG0436 322 ----EGAFYLFPKIPELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRL 385 (393)
T ss_pred ----CeeEEEEeecCCCCCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEecCHHHHHHHHHHH
Confidence 467778888865578899999999999999999966543 3789999877664444444443
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=270.76 Aligned_cols=329 Identities=14% Similarity=0.122 Sum_probs=251.2
Q ss_pred CCcccccCCCCCChHHHHHHHccCCC-----CCC-CCc----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNE-----DYR-SPA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL 77 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~-----~~~-~~~----~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~ 77 (367)
.++|++.+++.++++.+++++.++.. .+. .+. ..+..+++|+.+++++|.+++ ++++++|+|+++..++
T Consensus 3 ~~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~v~~~~g~t~a~~~~l 81 (402)
T TIGR02006 3 LPIYLDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSR-EIVFTSGATESNNLAI 81 (402)
T ss_pred ccEEeeCCcCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEeCCHHHHHHHHH
Confidence 36899999999999999999977532 121 111 235688899999999998764 5999999999999887
Q ss_pred Hcc----CCCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 78 TNT----LSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 78 ~~~----~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
.++ ..+||+|+++.++|++.. ....++..|++++.++.+.++.+|+++++++++ ++++++++++++|+||.
T Consensus 82 ~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~----~~~~lv~v~~~~n~tG~ 157 (402)
T TIGR02006 82 KGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAIR----DDTILVSIMHVNNEIGV 157 (402)
T ss_pred HHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcC----CCCEEEEEECCCcCcee
Confidence 654 368999999999888764 223445679999999998888899999999997 46799999999999999
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceee
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF 232 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~ 232 (367)
+.|+++|.++|++ +|+++++|++++.+..++++...++|++++|+||++ ||.|+|+++++++...++.+.....
T Consensus 158 ~~~~~~I~~l~~~--~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K~~-gp~G~G~l~~~~~~~~~~~~~~~g~--- 231 (402)
T TIGR02006 158 IQDIAAIGEICRE--RKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIY-GPKGIGALYVRRKPRVRLEALIHGG--- 231 (402)
T ss_pred cccHHHHHHHHHH--cCCEEEEEcchhcCCcccCccccCCCEEEEehhhhc-CCCceEEEEEccCCCCCCCceecCC---
Confidence 9999999999999 999999999999999998888889999999999976 6999999999987654444321110
Q ss_pred chHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEE
Q 017726 233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAV 311 (367)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~ 311 (367)
.+..+++ .+|+++..+.++..+++.+.+ +++.+.++.+++++++.+.|+++ ++.+..+. ..+...++.+
T Consensus 232 ---~~~~~~~-----~gt~~~~~~~al~~al~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~-~~~~p~~~~v 301 (402)
T TIGR02006 232 ---GHERGMR-----SGTLPTHQIVGMGEAFRIAKE-EMAQDTAHVLALRDRLLNGIKSIEEVYLNGDL-EHRVPGNLNV 301 (402)
T ss_pred ---CccCCcc-----CCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCc-cccCCCeEEE
Confidence 0011223 456999999999999998875 58888999999999999999987 77666532 2133333234
Q ss_pred EcCCCCCHHHHHHHHHhhCCeEEccCCCCC-------------------CCcEEEEeecCCCCHHHHHH
Q 017726 312 IVPSHINSSEIVRRAWQRYNLSLGLGLNKV-------------------AGKVFRIGHLGHLNEVMFNF 361 (367)
Q Consensus 312 ~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~-------------------~~~~iRi~~~~~~~~~~~~~ 361 (367)
.++ +.+..++...| .++.++.|.... ..+.+|+|++.+++.+|++.
T Consensus 302 ~f~-~~~~~~~~~~l---~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~ 366 (402)
T TIGR02006 302 SFN-YVEGESLIMAL---KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDY 366 (402)
T ss_pred EEe-CcCHHHHHHhc---CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHH
Confidence 442 34566776655 277777664321 13579999988777655443
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=261.28 Aligned_cols=325 Identities=16% Similarity=0.193 Sum_probs=256.6
Q ss_pred CcccccCCCCCChHHHHHHHccCC------------CCCCCCcHHHHHHHHHHHHHHHhcCCCCce-EEecCChhHHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNN------------EDYRSPAVPALTKTLLEDIKKIFKTTSGTP-FLIPTTGTGAWES 75 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~------------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-v~~~~ggt~al~~ 75 (367)
+.++|.|||..+|++|++++.+.. .+|+++.+.+..+++++.++++++.++++. +++.+|||.++.+
T Consensus 7 ~~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea 86 (365)
T PLN02452 7 RVFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAA 86 (365)
T ss_pred ceEeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHH
Confidence 579999999999999999998863 568999999999999999999999975544 4666888999999
Q ss_pred HHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCC---CCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 76 ALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGE---GAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 76 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~---~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
++.+++.+|+++++...+.|+.++.+.++..|...+........ .++++++ +.+ +..+.|.+++.++.||+
T Consensus 87 ~~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~v~~~hnETstGv 160 (365)
T PLN02452 87 IPLNLCKPGDKADFVVTGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSEW----ELT--PDAKFVHICANETIHGV 160 (365)
T ss_pred HHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHHc----CCC--CCCcEEEECCCCCCCcE
Confidence 99999999999999999999999889999998755544322222 3466654 222 46799999999999999
Q ss_pred c-ccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCcee
Q 017726 153 T-NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF 231 (367)
Q Consensus 153 ~-~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~ 231 (367)
. .|++++. ++++++|+++++++.++++.++++|+ +|++|.+ ||+|+|+++++++++++.... ...+
T Consensus 161 ~~~~~~~i~--------~~~lvVDa~Ss~g~~pidv~~~~v~~--~saqK~l-GP~Gl~~v~vr~~~l~~~~~~--~~~~ 227 (365)
T PLN02452 161 EFKDYPDVG--------NVPLVADMSSNFLSKPVDVSKYGVIY--AGAQKNV-GPSGVTIVIIRKDLIGNARPI--TPGM 227 (365)
T ss_pred ecCcccccC--------CCeEEEECCccccCcccCHHHcCEEE--Eeccccc-CCCCeEEEEEcHHHHhhcccC--CCch
Confidence 5 6665442 37899999999999999999877655 6999999 699999999999999886532 1234
Q ss_pred echHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceE
Q 017726 232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVT 309 (367)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~ 309 (367)
+++....++ + .+++||++..++++..+++++.++ |++.+.++.+++++++++.|++. |+.....++..++...+
T Consensus 228 ~~~~~~~~~---~-s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~v 303 (365)
T PLN02452 228 LDYKIHAEN---D-SLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNV 303 (365)
T ss_pred hhHHHHHhc---C-CccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEE
Confidence 444333222 2 346799999999999999999987 79999999999999999999996 77222222334677788
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 310 AVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 310 ~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
.|.+++....++|.+.++++ |+...+|.....+ +|+|.++..+.++.
T Consensus 304 sF~~~~~~~~~~f~~~~~~~-g~~~~~G~r~~gg--~R~s~yna~~~~~v 350 (365)
T PLN02452 304 PFTLGGSELEAEFVKEAAKA-GMVQLKGHRSVGG--MRASIYNAMPLAGV 350 (365)
T ss_pred EEEcCCchhHHHHHHHHHHC-CCcccCCccccCc--eEEECcCCCCHHHH
Confidence 89986544567888988655 9998888765433 99999997765543
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=256.13 Aligned_cols=321 Identities=15% Similarity=0.166 Sum_probs=246.9
Q ss_pred CChHHHHHHHccCCC------------CCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecC-ChhHHHHHHHHccCCCCC
Q 017726 19 HIPDQVIRAMNRNNE------------DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPT-TGTGAWESALTNTLSPGD 85 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~------------~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~-ggt~al~~~~~~~~~~gd 85 (367)
..|+.|++++.++.. +|+++.+.+.++++++.++++++.+.++++++++ |||+|+++++.+++.+|+
T Consensus 2 ~~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~~~~ 81 (349)
T TIGR01364 2 ALPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLAEGK 81 (349)
T ss_pred CCCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCC
Confidence 367778888877533 2445677899999999999999986544566664 599999999999998999
Q ss_pred eEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC----CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHH
Q 017726 86 RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG----EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRK 161 (367)
Q Consensus 86 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~----~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~ 161 (367)
++++...+.|+.+|..++++.|+ +..+..++. ..+|+++++ ++ +++++|.++|..|+||...| +
T Consensus 82 ~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~v~~th~ETstGv~~~-----~ 149 (349)
T TIGR01364 82 VADYIVTGAWSKKAAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--IS----EDAAYVHYCANETIHGVEFR-----E 149 (349)
T ss_pred eEEEEECCHHHHHHHHHHHHhCC-cEEEeccccCCCCCCCCHHhcC--CC----CCCCEEEEcCCCCcccEecc-----e
Confidence 99999999999999999999999 777775422 234556544 22 47899999999999999887 6
Q ss_pred HHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHh
Q 017726 162 LLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFY 241 (367)
Q Consensus 162 ~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (367)
+++. +++++++|+++++++.++++++ .|++++|+||++ ||+|+|+++++++.++++.+.. ..+.++.....
T Consensus 150 l~~~--~~~l~iVDavss~g~~~id~~~--~d~~~~ssqK~l-gP~Glg~l~~s~~~~~~~~~~~--~~~~~~~~~~~-- 220 (349)
T TIGR01364 150 LPDV--KNAPLVADMSSNILSRPIDVSK--FGLIYAGAQKNI-GPAGLTVVIVRKDLLGRASRIT--PSMLNYKIHAE-- 220 (349)
T ss_pred eccc--CCCeEEEEccccccCccCCHHH--ccEEEEeccccc-CCCceEEEEECHHHHhhcccCC--CCcchHHHHHh--
Confidence 7777 8999999999999999999986 469999999998 5999999999999998876531 12333311111
Q ss_pred hcCCccCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCCH
Q 017726 242 NLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINS 319 (367)
Q Consensus 242 ~~~~~~~~~~~~~~~~al~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (367)
.+ .+++||++..++++.++++++.++ |++++.++.+++++++++.|+++ |+.....++..+++.++.|.+++....
T Consensus 221 -~~-~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~~~~ 298 (349)
T TIGR01364 221 -ND-SMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNEELE 298 (349)
T ss_pred -cC-CCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCChhHh
Confidence 12 246799999999999999999999 79999999999999999999999 665543322346667788888532123
Q ss_pred HHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH--Hhhhh
Q 017726 320 SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN--FQLLF 365 (367)
Q Consensus 320 ~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~--~~~l~ 365 (367)
.++.+.+. +.|+.+.+|.. ..+.+|+|++++++.+|++ .++|+
T Consensus 299 ~~~~~~~~-~~Gi~~~~~~~--~~g~vRvS~~~~nt~edid~l~~al~ 343 (349)
T TIGR01364 299 KRFLKEAE-ERGLVSLKGHR--SVGGMRASIYNAMPLEGVQALVDFMK 343 (349)
T ss_pred HHHHHHHH-HCCCcccCCcc--ccCeeEEECcCCCCHHHHHHHHHHHH
Confidence 56656665 45996666654 2358999999987766544 44443
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=260.91 Aligned_cols=308 Identities=17% Similarity=0.188 Sum_probs=241.1
Q ss_pred ccccCCCCCChHHHHHHHccCCCC-----CC-CCc----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc
Q 017726 11 HLFVPGPVHIPDQVIRAMNRNNED-----YR-SPA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT 80 (367)
Q Consensus 11 ~~~~~~p~~~~~~v~~a~~~~~~~-----~~-~~~----~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~ 80 (367)
|++.++-.++|+.+++++.++... +. .+. ..+..+++|+.+++++|.+++ ++++++|++++++.++.++
T Consensus 1 yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~v~~~~g~t~a~~~~l~~l 79 (353)
T TIGR03235 1 YLDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTE-EVIFTSGATESNNLAILGL 79 (353)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEeCCHHHHHHHHHHHH
Confidence 567777888999999999775321 11 111 235578999999999999764 5999999999999888776
Q ss_pred C----CCC-CeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc
Q 017726 81 L----SPG-DRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN 154 (367)
Q Consensus 81 ~----~~g-d~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~ 154 (367)
. .+| +.|++...+|++.. ....++..|++++.++.+.++.+|+++++++++ +++++|++++++||||.+.
T Consensus 80 ~~~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~----~~~~lv~~~~~~n~tG~~~ 155 (353)
T TIGR03235 80 ARAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDESGRIDVDELADAIR----PDTLLVSIMHVNNETGSIQ 155 (353)
T ss_pred HHhcccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCC----CCCEEEEEEcccCCceecc
Confidence 4 355 67888877777764 224456679999999998888899999999987 4679999999999999999
Q ss_pred cHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeech
Q 017726 155 NLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDW 234 (367)
Q Consensus 155 ~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 234 (367)
|+++|.++|++ +|+++++|++|+++..++++..+++|++++|+||++ ||+|+|+++++++...... ........
T Consensus 156 ~~~~I~~l~~~--~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~-gp~g~g~l~~~~~~~~~~~---~~~~~~~~ 229 (353)
T TIGR03235 156 PIREIAEVLEA--HEAFFHVDAAQVVGKITVDLSADRIDLISCSGHKIY-GPKGIGALVIRKRGKPKAP---LKPIMFGG 229 (353)
T ss_pred CHHHHHHHHHH--cCCEEEEEchhhcCCccccccccCCCEEEeehhhcC-CCCceEEEEEccCcccccc---cCceeeCC
Confidence 99999999999 999999999999999999988889999999999986 7999999999988543211 11111110
Q ss_pred HHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcC
Q 017726 235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 314 (367)
. ...+ +.++|+++..++++.++++.+. .+++++.++++++++++++.|++.|+++..+.. .....++.|.+
T Consensus 230 ~-~~~~-----~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~-~~~~~i~~~~~- 300 (353)
T TIGR03235 230 G-QERG-----LRPGTLPVHLIVGMGEAAEIAR-RNAQAWEVKLRAMRNQLRDALQTLGVKLNGDPA-ETIPHILNFSI- 300 (353)
T ss_pred C-CcCc-----cccCCCChHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhccCCeEEeCCcc-cccCCEEEEEe-
Confidence 0 0012 2355688999999999999876 478899999999999999999888988876432 24556777877
Q ss_pred CCCCHHHHHHHHHhhCCeEEccCCCC
Q 017726 315 SHINSSEIVRRAWQRYNLSLGLGLNK 340 (367)
Q Consensus 315 ~~~~~~~l~~~L~~~~gv~v~~g~~~ 340 (367)
++.+.+++.+.|. + +|.+.+|..+
T Consensus 301 ~~~~~~~v~~~L~-~-~i~v~~g~~~ 324 (353)
T TIGR03235 301 DGVNSEALIVNLR-A-DAAVSTGSAC 324 (353)
T ss_pred CCcCHHHHHHHHh-C-CeEEEchhhc
Confidence 4678889999994 5 8999988654
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=249.71 Aligned_cols=331 Identities=16% Similarity=0.163 Sum_probs=260.3
Q ss_pred CCcccccCCCCCChHHHHHHHccC-----C-------CCCCCCcHHHHHHHHHHHHHHHhcCCCCceE-EecCChhHHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRN-----N-------EDYRSPAVPALTKTLLEDIKKIFKTTSGTPF-LIPTTGTGAWE 74 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~-----~-------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v-~~~~ggt~al~ 74 (367)
.|.|+|+|||..+|++|++++.+. . .+|+++.+.+...++++.+++++++++.+.| ++.+|||.++.
T Consensus 3 ~~~~nF~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~e 82 (364)
T PRK12462 3 RNQLNFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFS 82 (364)
T ss_pred cccceecCCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHH
Confidence 358899999999999999999952 2 4588999999999999999999999765555 55556899999
Q ss_pred HHHHccCCCCCeEE-EEeCCcchHHHHHHHHHhCCceEEEeCCC----CCCCCHHHHHHHHhccCCCCccEEEEEecCCC
Q 017726 75 SALTNTLSPGDRII-SFLIGQFSLLWIDQQQRLNFNVDVVESDW----GEGAKLDVLASKLAADTAHTIKAICIVHNETA 149 (367)
Q Consensus 75 ~~~~~~~~~gd~vl-~~~~~~~~~~~~~~~~~~g~~~~~v~~~~----~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~ 149 (367)
++..+++.+|++++ +...++|+.+|.+.++..| ++..+.... ...++++++ .+. +..+.|.+|+..+.
T Consensus 83 a~~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~--~~~----~d~~~v~~t~NETs 155 (364)
T PRK12462 83 MIPMNFSRPGAAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAEL--DWD----ARAPFRHYVSNETV 155 (364)
T ss_pred HHHHHcCCCCCcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHh--ccC----CCCcEEEEccCCCC
Confidence 99999999999777 8889999999888898888 666554321 123455554 122 35689999999999
Q ss_pred ccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCc
Q 017726 150 TGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR 229 (367)
Q Consensus 150 tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~ 229 (367)
+|+..| ++.+. +++++++|+++++++.+++++++ |+++.+.+|.++ |+|+++++++++.+++.... ..
T Consensus 156 tGv~~~-----~~~~~--~~~llvvD~sS~~~s~pid~~~~--dvi~agsQKnlg-P~Gltvvivs~~al~~~~~~--~p 223 (364)
T PRK12462 156 EGLQFP-----DAAGL--PDSPLIADMSSDFMSRPFDVEAY--GMVYAHAQKNLG-PAGVTVAIIRRALLERVPDT--LP 223 (364)
T ss_pred ceEecC-----ccccc--CCCeEEEEcCchhhCCCCChHHc--cEEEeeccccCC-CCceEEEEECHHHHhhcccc--CC
Confidence 999997 44445 68999999999999999999965 999999999995 99999999999999887642 23
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCC
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE--GLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSD 306 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~--g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~ 306 (367)
.+++|.....+ + ..++||++..+.++..+++++.++ |++.+.++.++.++.+++.++++ |+.....++..++.
T Consensus 224 ~~ldy~~~~~~---~-s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~ 299 (364)
T PRK12462 224 PMLDFRTHVEH---R-SNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARST 299 (364)
T ss_pred chhhHHHHHhc---C-CCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcCc
Confidence 45555555442 2 246799999999999999999888 89999999999999999999998 57666666777888
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHH--HHHHhhh
Q 017726 307 TVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV--MFNFQLL 364 (367)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~--~~~~~~l 364 (367)
..+.|++++..-.++|.+... +.|+.-..|.... +.+|+|.++..+.+ +.+.+++
T Consensus 300 mnv~f~~~~~~l~~~f~~~a~-~~gl~~lkGhr~v--gg~Ras~yna~~~e~v~~L~~fm 356 (364)
T PRK12462 300 MNVAFRFRQPRLDTLFKEQST-EAGFCGLSGHRSI--GGIRASLYNAVSEQAVSRLCAFL 356 (364)
T ss_pred ceEEEEcCCHHHHHHHHHHHH-HCCCccccCCccc--CceEEEcCCCCCHHHHHHHHHHH
Confidence 889999865444567777775 4487765554332 34999999866544 4444433
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=263.62 Aligned_cols=340 Identities=16% Similarity=0.114 Sum_probs=245.3
Q ss_pred CCCcccccCCCCCChHHHHHHHccCCCC-----CCC-----CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHH
Q 017726 7 PGKNHLFVPGPVHIPDQVIRAMNRNNED-----YRS-----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESA 76 (367)
Q Consensus 7 ~~~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~-----~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~ 76 (367)
+..+|++..+-.++|+.+.+++.++... ..+ ..+....+++++ + +++|++++ +|++++|+|++++.+
T Consensus 26 ~~~iyld~~a~g~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g~~~~-~v~~~~~~t~~l~~~ 102 (406)
T TIGR01814 26 NAVIYLDGNSLGLMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLK-L-RLVGAKED-EVVVMNTLTINLHLL 102 (406)
T ss_pred CCcEEecCCCcCcCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhcc-c-cccCCCCC-cEEEeCCchHHHHHH
Confidence 3457777566667789999988764221 111 123344444444 5 79998764 599999999999999
Q ss_pred HHccCCCCC---eEEEEeCCcchHH--HHHHHHHhCCce----EEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecC
Q 017726 77 LTNTLSPGD---RIISFLIGQFSLL--WIDQQQRLNFNV----DVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNE 147 (367)
Q Consensus 77 ~~~~~~~gd---~vl~~~~~~~~~~--~~~~~~~~g~~~----~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~ 147 (367)
+.+++.+++ .|++.+.+|.+.. +...++..|+++ +.++.+.++.+|++++++.++..+ +++++|++++++
T Consensus 103 ~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-~~t~lv~~~~v~ 181 (406)
T TIGR01814 103 LASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILDTIEKNG-DDIAVILLSGVQ 181 (406)
T ss_pred HHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHHHHHhcC-CCeEEEEEeccc
Confidence 888766542 5777777887754 444567778887 466666567789999999886443 578999999999
Q ss_pred CCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCC
Q 017726 148 TATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS 227 (367)
Q Consensus 148 n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~ 227 (367)
|.||.+.|+++|.++|++ +|+++++|++|++|..++++..+++|++++|+|||+.||+| |.++++++....+.+...
T Consensus 182 ~~tG~~~~~~~i~~~~~~--~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s~hK~l~g~pG-~~l~v~~~~~~~~~p~~~ 258 (406)
T TIGR01814 182 YYTGQLFDMAAITRAAHA--KGALVGFDLAHAVGNVPLDLHDWGVDFACWCTYKYLNAGPG-AGAFVHEKHAHTERPRLA 258 (406)
T ss_pred cccceecCHHHHHHHHHH--cCCEEEEEcccccCCcccccccCCCCEEEEcCccccCCCCC-eEEEEehhhhhhcCCCCC
Confidence 999999999999999999 99999999999999999999888999999999999987888 767766655444444322
Q ss_pred Cceeec----hHH-HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-C----Cccc
Q 017726 228 VRVFFD----WKD-YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-G----LKNC 297 (367)
Q Consensus 228 ~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g----~~~~ 297 (367)
..+... +.. .........+..+|+++..++++.++++++.+.|++++.++..++.+++++.|++. | ++++
T Consensus 259 g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~ 338 (406)
T TIGR01814 259 GWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTII 338 (406)
T ss_pred cccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEe
Confidence 111100 000 00000011223457999999999999999999999999999999999999999885 3 7777
Q ss_pred cCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEee-cCCCCHHHHH
Q 017726 298 TQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGH-LGHLNEVMFN 360 (367)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~-~~~~~~~~~~ 360 (367)
.+.+......++.|.++ .+..++.+.|.++ ||.+... .+..+|+|+ +.+++.+|++
T Consensus 339 ~~~~~~~r~~~v~~~~~--~~~~~~~~~L~~~-gi~v~~~----~~~~iRiS~~~~~nt~~did 395 (406)
T TIGR01814 339 TPRDHAQRGCQLSLTHP--VPGKAVFQALIKR-GVIGDKR----EPSVIRVAPVPLYNTFVDVY 395 (406)
T ss_pred CCCChhhcCCeEEEEec--CCHHHHHHHHHHC-CEEEecc----CCCeEEEechhccCCHHHHH
Confidence 75332222446778875 5678899999654 9987532 235899998 4566655443
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=276.68 Aligned_cols=324 Identities=12% Similarity=0.069 Sum_probs=243.1
Q ss_pred CcccccCCCCCChH-HHHHHHccCC-----CCCCC----CcHHHHHHHHHHHHHHHhcCCCCc-eEEecCChhHHHHHHH
Q 017726 9 KNHLFVPGPVHIPD-QVIRAMNRNN-----EDYRS----PAVPALTKTLLEDIKKIFKTTSGT-PFLIPTTGTGAWESAL 77 (367)
Q Consensus 9 ~~~~~~~~p~~~~~-~v~~a~~~~~-----~~~~~----~~~~~~~~~~~~~la~~~~~~~~~-~v~~~~ggt~al~~~~ 77 (367)
.+|++.++.+++++ .+.+++.++. +.+.. ....+.++++|+.+++++|+++++ .|+||+|+|+|+++++
T Consensus 35 ~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva 114 (805)
T PLN02724 35 VVYLDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVG 114 (805)
T ss_pred CEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHH
Confidence 58999998887665 4444444331 12321 124567899999999999997655 6899999999999998
Q ss_pred Hcc-CCCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCC--------CCCCCCH--HHHHHHHhc------cCCCCcc
Q 017726 78 TNT-LSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESD--------WGEGAKL--DVLASKLAA------DTAHTIK 139 (367)
Q Consensus 78 ~~~-~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~--------~~~~~d~--e~l~~~i~~------~~~~~~~ 139 (367)
.++ +.+||+|+++..+|.+.. |...++..|+++..++.+ ..+.+++ +++++.+++ ...++++
T Consensus 115 ~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~ 194 (805)
T PLN02724 115 ETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYN 194 (805)
T ss_pred HHCCCCCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcc
Confidence 876 688999999888887765 556677789999999876 2333433 567665421 0114678
Q ss_pred EEEEEecCCCccccccHHHHHHHHHhc-CC-----CcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeee
Q 017726 140 AICIVHNETATGVTNNLSKVRKLLDEY-RH-----PALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVC 213 (367)
Q Consensus 140 lv~~~~~~n~tG~~~~~~~i~~~~~~~-~~-----~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~ 213 (367)
+|.+++.+|.||.+.|++.+..+++.. .+ ++++++|++|+++..++|+..+++|++++|+|||++||.|+|+++
T Consensus 195 LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~G~G~L~ 274 (805)
T PLN02724 195 LFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFGYPTGLGALL 274 (805)
T ss_pred eEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCChhhcCCCEEEEecceeccCCCCceEEE
Confidence 999999999999999999775555431 11 367999999999999999999999999999999997799999999
Q ss_pred eCHHHHHHhccCCCCceee-----------chHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Q 017726 214 ASPKALEASKTAKSVRVFF-----------DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLG 282 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~ 282 (367)
++++..+++.+...++... .......+++.|+ +++.+++++.++++++.+.|++++.++..+++
T Consensus 275 vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT-----~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~ 349 (805)
T PLN02724 275 VRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGT-----ISFLSIAALRHGFKLLNRLTISAIAMHTWALT 349 (805)
T ss_pred EehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCC-----cchhHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 9999888777654332110 1112346777775 99999999999999999999999999999999
Q ss_pred HHHHHHHHHc-------CCccccCCC----ccCCCceEEEEcCCCCC-----HHHHHHHHHhhCCeEEccCCC
Q 017726 283 KATRLAVEAW-------GLKNCTQKE----EWFSDTVTAVIVPSHIN-----SSEIVRRAWQRYNLSLGLGLN 339 (367)
Q Consensus 283 ~~l~~~L~~~-------g~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~l~~~L~~~~gv~v~~g~~ 339 (367)
+++.+.|+++ ++.++.+.. ......++.|.+ .+.+ ..+ ...|.+++||.++.|..
T Consensus 350 ~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv-~~~~~~~v~~~~-v~~l~~~~gI~vR~G~~ 420 (805)
T PLN02724 350 HYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNL-KRADGSWVGHRE-VEKLASLSGIQLRTGCF 420 (805)
T ss_pred HHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEE-EcCCCCEeCHHH-HHHHHHhcCcEEeeccc
Confidence 9999999986 366776531 123445888888 4433 333 44565678999998865
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=254.55 Aligned_cols=325 Identities=14% Similarity=0.124 Sum_probs=241.8
Q ss_pred CcccccCCCCCChHHHHHHHccCCC--C-----CC-CCc----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNE--D-----YR-SPA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESA 76 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~--~-----~~-~~~----~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~ 76 (367)
++|++.++++++|+.+++++.++.. . +. ... .....+++|+.+++++|+++. ++++++|+|+++.++
T Consensus 4 ~iyld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~-~v~~~~g~t~al~~~ 82 (404)
T PRK14012 4 PIYLDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPR-EIVFTSGATESDNLA 82 (404)
T ss_pred eEEecCcCCCCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcC-eEEEeCCHHHHHHHH
Confidence 6899999999999999999977543 1 11 111 135678899999999999764 489999999999988
Q ss_pred HHcc----CCCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcc
Q 017726 77 LTNT----LSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATG 151 (367)
Q Consensus 77 ~~~~----~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG 151 (367)
+.++ ..+||.|+++..+|++.. ....++..|++++.++.+.++.+|+++++++++ +++++|++++++|+||
T Consensus 83 l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~----~~t~lv~~~~~~n~tG 158 (404)
T PRK14012 83 IKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMR----DDTILVSIMHVNNEIG 158 (404)
T ss_pred HHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcC----CCCEEEEEECcCCCcc
Confidence 7654 478999999999887764 223345569999999998888899999999997 4679999999999999
Q ss_pred ccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCcee
Q 017726 152 VTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF 231 (367)
Q Consensus 152 ~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~ 231 (367)
.+.|+++|.++|++ +|+++++|++++.+..++++...++|++++|+||.+ ||.|+|+++++++...++.+......
T Consensus 159 ~~~~~~~I~~la~~--~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~-gp~g~G~l~~~~~~~~~~~~~~~g~~- 234 (404)
T PRK14012 159 VIQDIAAIGEICRE--RGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHKIY-GPKGIGALYVRRKPRVRLEAQMHGGG- 234 (404)
T ss_pred chhhHHHHHHHHHH--cCCEEEEEcchhcCCcccCcccCCCCEEEEehhhcc-CCCceEEEEEecCCCCCCCceecCCC-
Confidence 99999999999999 999999999999999888888788999999999966 68889999998775433322111100
Q ss_pred echHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCC--ce
Q 017726 232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSD--TV 308 (367)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~--~~ 308 (367)
...+++ .++++...+.++.++++.... +.+++.++..++++++.+.|++. ++.+..+... ... ..
T Consensus 235 -----~~~~~~-----~gt~~~~~~~~l~~al~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~-~~~~~~~ 302 (404)
T PRK14012 235 -----HERGMR-----SGTLPTHQIVGMGEAARIAKE-EMATENERIRALRDRLWNGIKDIEEVYLNGDLEQ-RVPGNLN 302 (404)
T ss_pred -----ccCCcc-----CCCcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccc-cCCCEEE
Confidence 001122 335778788888888888765 36778899999999999999886 6665433111 222 23
Q ss_pred EEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC-------------------CCCcEEEEeecCCCCHHHHH
Q 017726 309 TAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK-------------------VAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 309 ~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~-------------------~~~~~iRi~~~~~~~~~~~~ 360 (367)
++|... +.+++.+.|. ++.+..|... ...+.+|++++.+.+++|++
T Consensus 303 ~~~~~~---~~~~~~~~l~---~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd 367 (404)
T PRK14012 303 VSFNYV---EGESLIMALK---DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEID 367 (404)
T ss_pred EEEeCc---CHHHHHHhCC---CeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHH
Confidence 444442 3457777763 5555554221 12356999998877765543
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=249.53 Aligned_cols=322 Identities=12% Similarity=0.042 Sum_probs=226.7
Q ss_pred cccccCCCC--CChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhc------CCCCceEEecCChhHHHHHHHHc
Q 017726 10 NHLFVPGPV--HIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFK------TTSGTPFLIPTTGTGAWESALTN 79 (367)
Q Consensus 10 ~~~~~~~p~--~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~------~~~~~~v~~~~ggt~al~~~~~~ 79 (367)
.+.+..|.. ++++.+.+++.+.... ..+|. .....++|+.++++++ ++++++|++|+|+++++..++.+
T Consensus 34 ~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~ 112 (399)
T PRK07681 34 MIDLSIGNPDMPPADFVREEMVHTANQKESYGYT-LSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMV 112 (399)
T ss_pred eEEeCCCCCCCCCCHHHHHHHHHHHhccccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHH
Confidence 344444332 3567777777764322 12221 2456678888888875 23325699999999999999999
Q ss_pred cCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc--
Q 017726 80 TLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN-- 155 (367)
Q Consensus 80 ~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~-- 155 (367)
++++||.|+++.|.|+.+. ..++..|++++.++++++ +.+|++++++++. +++|+|++++||||||.+++
T Consensus 113 ~~~~Gd~Vlv~~P~y~~~~--~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~----~~~k~v~l~~P~NPTG~~~s~~ 186 (399)
T PRK07681 113 YANPGDIILVPDPGYTAYE--TGIQMAGATSYYMPLKKENDFLPDLELIPEEIA----DKAKMMILNFPGNPVPAMAHED 186 (399)
T ss_pred hCCCCCEEEECCCCccchH--HHHHhcCCEEEEEecCCCCCCcCCHHHHHHhcc----ccceEEEEeCCCCCcCcCCCHH
Confidence 9999999999999877653 556789999999998754 4679999998886 46799999999999999998
Q ss_pred -HHHHHHHHHhcCCCcEEEEeeeeccCcee----ec---cc-cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhcc
Q 017726 156 -LSKVRKLLDEYRHPALFLVDGVSSICAID----FR---MD-EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKT 224 (367)
Q Consensus 156 -~~~i~~~~~~~~~~~~vi~D~~~~~~~~~----~~---~~-~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~ 224 (367)
+++|.++|++ +|++||+|++|...... .+ .. .....+++.|+||.++ .+| +|+++.++++++++..
T Consensus 187 ~~~~i~~~a~~--~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~GlRiG~~i~~~~l~~~~~~ 263 (399)
T PRK07681 187 FFKEVIAFAKK--HNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYS-LAGSRIGYMIGNEEIVRALTQ 263 (399)
T ss_pred HHHHHHHHHHH--cCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccC-CccceeEEEecCHHHHHHHHH
Confidence 6667888888 99999999998744321 11 11 1134688899999984 455 7999999999887764
Q ss_pred CCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccC
Q 017726 225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWF 304 (367)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 304 (367)
... . ..++.+.....++..++..-.. -+++.++.++++++.+.+.|++.|+.+..+ .
T Consensus 264 ~~~----------------~--~~~~~s~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p----~ 320 (399)
T PRK07681 264 FKS----------------N--TDYGVFLPIQKAACAALRNGAA-FCEKNRGIYQERRDTLVDGFRTFGWNVDKP----A 320 (399)
T ss_pred HHh----------------h--cccCCCHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHHCCCcccCC----C
Confidence 311 0 1223444333333333332111 156677788899999999999988776555 4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 305 SDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 305 ~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
++.++|++++++.+..++.+.|.+++||.+.+|... ..++++||++....+..+...+.|
T Consensus 321 ~g~f~~~~l~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~l~~l 382 (399)
T PRK07681 321 GSMFVWAEIPKGWTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQDEEVLQQAVENI 382 (399)
T ss_pred eeeEEEEECCCCCCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHH
Confidence 567888998777788899999988689999998432 234689999764333333333333
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=245.77 Aligned_cols=323 Identities=13% Similarity=0.129 Sum_probs=235.1
Q ss_pred CCChHHHHHHHccCCCCCCC---------CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEE
Q 017726 18 VHIPDQVIRAMNRNNEDYRS---------PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRII 88 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~~~~~---------~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl 88 (367)
.++++++++++.++...... ........++++.+++++|.++ +++++|+++++..++.+++.+||+|+
T Consensus 30 ~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~---~~~~~g~t~a~~~al~~l~~~gd~Vl 106 (387)
T PRK09331 30 GILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDE---ARVTHGAREGKFAVMHSLCKKGDYVV 106 (387)
T ss_pred CCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCCCc---EEEeCCHHHHHHHHHHHhcCCCCEEE
Confidence 46788899999886533211 1123468899999999999864 67899999999999999999999999
Q ss_pred EEeCCcchHHHHHHHHHhCCceEEEeC--CCCCCCCHHHHHHHHhccC---CCCccEEEEEecCCCccccccHHHHHHHH
Q 017726 89 SFLIGQFSLLWIDQQQRLNFNVDVVES--DWGEGAKLDVLASKLAADT---AHTIKAICIVHNETATGVTNNLSKVRKLL 163 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~e~l~~~i~~~~---~~~~~lv~~~~~~n~tG~~~~~~~i~~~~ 163 (367)
+..++|++... .++..|++++.++. +.++.+|+++++++++++. .+++++|++++++|++|.+.|+++|.++|
T Consensus 107 v~~~~h~s~~~--~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la 184 (387)
T PRK09331 107 LDGLAHYTSYV--AAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVA 184 (387)
T ss_pred ECCCchHHHHH--HHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHH
Confidence 99998888653 36778999999998 5677899999999997531 13689999999999999999999999999
Q ss_pred HhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhc
Q 017726 164 DEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL 243 (367)
Q Consensus 164 ~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (367)
++ +|+++++|++|+.+..+++...+++|++++|+||+++++.|+|+++++++.++.+..... .+... ....+
T Consensus 185 ~~--~g~~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~~~~~-~~~~~---~~~~~-- 256 (387)
T PRK09331 185 HE--YGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASAPSGVLATTEEYADKVFRTSR-KFGVK---EVELL-- 256 (387)
T ss_pred HH--cCCEEEEECCcccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhcccccC-CCccc---ceeee--
Confidence 99 999999999999998888888888999999999999888889999999998887654321 11000 00000
Q ss_pred CCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCC-------
Q 017726 244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS------- 315 (367)
Q Consensus 244 ~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~------- 315 (367)
++ +.+....+++.++++.+.+. + +..++..++++++++.|+++ |+++....+ ....++.+..|.
T Consensus 257 ~~----~~~~~~~~~~~aal~~~~~~-~-~~~~~~~~~~~~l~~~L~~l~g~~~~~~~~--~~~~i~~~~~~~~~~~~~~ 328 (387)
T PRK09331 257 GC----TLRGAPLVTLMASFPHVVER-V-KRWDEEVKKARWFVDELEKIEGFKQLGEKP--RNHDLMKFETPSFDEIAKK 328 (387)
T ss_pred ce----ecCchHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHhcCCCEEEeccCc--CcCCeEEEeCCchhHHhhh
Confidence 11 12222234455566555443 2 34556678888999999999 998885322 234466666541
Q ss_pred -CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHhhhh
Q 017726 316 -HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQLLF 365 (367)
Q Consensus 316 -~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 365 (367)
..+..++.+.|.+ +||... .+..+..+|++..+ +.++.+....+|+
T Consensus 329 ~~~~~~~~~~~L~~-~gI~~~---~~~~~~i~ri~~~g~t~~di~~l~~aL~ 376 (387)
T PRK09331 329 HKRRGFFLYEELKK-RGIHGI---KPGATKEFKLSTYGLTWEQVEYVADAFK 376 (387)
T ss_pred ccccchhHHHHHHH-cCceEE---ccCCceEEEEEeccCCHHHHHHHHHHHH
Confidence 1123568899965 499732 22335678998767 3344455555554
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=246.48 Aligned_cols=301 Identities=15% Similarity=0.068 Sum_probs=215.5
Q ss_pred CChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHh----cC--CCCceEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 19 HIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIF----KT--TSGTPFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~----~~--~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
++++.+.+++.+.... ...|.......++|+.+++++ |. ++++.|++|+|+++++..++.+++++||.|+++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~~~gd~Vl~~ 123 (385)
T PRK09276 44 PTPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVP 123 (385)
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEc
Confidence 4566777777664321 122332334567888888877 44 333348889999999999999999999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccH---HHHHHHHHh
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL---SKVRKLLDE 165 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~---~~i~~~~~~ 165 (367)
+|.|+.+. ..++..|.+++.++.+.+ +.+|++++++++. +++++|++++|+||||.+++. ++|.++|++
T Consensus 124 ~P~y~~~~--~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~----~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~ 197 (385)
T PRK09276 124 DPGYPVYK--IGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVA----KKAKLMFINYPNNPTGAVADLEFFEEVVDFAKK 197 (385)
T ss_pred CCCCcChH--HHHHHcCCEEEEEecCCCCCCcCCHHHHHHhcc----ccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99877643 456778999999998643 5679999988876 467999999999999999985 677888888
Q ss_pred cCCCcEEEEeeeeccCcee----ec---ccc-ccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechH
Q 017726 166 YRHPALFLVDGVSSICAID----FR---MDE-WGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~----~~---~~~-~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (367)
+|++||+|++|...... .+ ... .+..+++.|+||.+ |.+| +|++++++++++.+......
T Consensus 198 --~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~i~~~~l~~~~~~~~~~------- 267 (385)
T PRK09276 198 --YDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTY-NMTGWRIGFAVGNADLIAGLGKVKSN------- 267 (385)
T ss_pred --CCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhc-CCcchhheeeeCCHHHHHHHHHHHhh-------
Confidence 99999999998743211 11 111 23568899999988 4666 79999999998877642110
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS 315 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 315 (367)
. ....+.....++..++..... -+++.++++.++++.+.+.|++.|+++..+ .++.++++++++
T Consensus 268 -------~----~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~----~~~~~~~v~~~~ 331 (385)
T PRK09276 268 -------V----DSGVFQAIQEAGIAALNGPQE-VVEELRKIYQERRDILVEGLRKLGLEVEPP----KATFYVWAPVPK 331 (385)
T ss_pred -------c----cCCCCHHHHHHHHHHHcCcHH-HHHHHHHHHHHHHHHHHHHHHhCCCcccCC----CcceEEEEECCC
Confidence 0 111222222333333332111 267778888999999999999988877665 456668898877
Q ss_pred CCCHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeec
Q 017726 316 HINSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHL 351 (367)
Q Consensus 316 ~~~~~~l~~~L~~~~gv~v~~g~~~~--~~~~iRi~~~ 351 (367)
+.+..+++++|.+++||.+.+|..+. .++++||++.
T Consensus 332 ~~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~ 369 (385)
T PRK09276 332 GYTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALT 369 (385)
T ss_pred CCCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeC
Confidence 77888999998877799999984432 2468999975
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-32 Score=246.14 Aligned_cols=297 Identities=17% Similarity=0.108 Sum_probs=213.6
Q ss_pred HHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHH
Q 017726 22 DQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWID 101 (367)
Q Consensus 22 ~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~ 101 (367)
++..+++.+. ...|.......++|+.++++++.-++++|++|+|+++++.+++.+++.+||+|+++.|.|.+. ..
T Consensus 45 ~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~--~~ 119 (373)
T PRK07324 45 EAFYQELGQK---KLTYGWIEGSPEFKEAVASLYQNVKPENILQTNGATGANFLVLYALVEPGDHVISVYPTYQQL--YD 119 (373)
T ss_pred HHHHHHHhcC---CccCCCCCCCHHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhH--HH
Confidence 4445555432 223333345679999999998633334699999999999999999999999999999976654 35
Q ss_pred HHHHhCCceEEEeCCCC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCCCcEEEEee
Q 017726 102 QQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDG 176 (367)
Q Consensus 102 ~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~ 176 (367)
.++..|.+++.++++.+ +.+|++++++++. +++|++++++|+||||.+++ +++|.++|++ +|+++++|+
T Consensus 120 ~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~----~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~--~~~~ii~De 193 (373)
T PRK07324 120 IPESLGAEVDYWQLKEENGWLPDLDELRRLVR----PNTKLICINNANNPTGALMDRAYLEEIVEIARS--VDAYVLSDE 193 (373)
T ss_pred HHHHcCCEEEEEecccccCCCCCHHHHHHhCC----CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHH--CCCEEEEEc
Confidence 67889999999998753 4579999998886 47799999999999999998 7788888998 999999999
Q ss_pred eeccCceee---cc-ccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCC
Q 017726 177 VSSICAIDF---RM-DEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT 250 (367)
Q Consensus 177 ~~~~~~~~~---~~-~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (367)
+|....... +. ......+++.|+||.++ .+| +|++++++++++++....... ..+
T Consensus 194 ~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~~~-~~G~RiG~i~~~~~li~~~~~~~~~~------------------~~~ 254 (373)
T PRK07324 194 VYRPLDEDGSTPSIADLYEKGISTNSMSKTYS-LPGIRVGWIAANEEVIDILRKYRDYT------------------MIC 254 (373)
T ss_pred cccccccCCCCCChhhccCCEEEEecchhhcC-CccceeEEEecCHHHHHHHHHHhCcE------------------Eec
Confidence 986432211 11 11134588899999985 444 699999999988877542210 112
Q ss_pred CcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhh
Q 017726 251 PSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQR 329 (367)
Q Consensus 251 ~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 329 (367)
.+.....+...++...... +++.++.++++++.+.+.|++. ++.+..| .++.+.+++++.+.+..+++++|.++
T Consensus 255 ~~~~~q~~a~~~l~~~~~~-l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p----~gg~~~~i~~~~~~~~~~~~~~ll~~ 329 (373)
T PRK07324 255 AGVFDDMLASLALEHRDAI-LERNRKIVRTNLAILDEWVAKEPRVSYVKP----KAVSTSFVKLDVDMPSEDFCLKLLKE 329 (373)
T ss_pred CChHHHHHHHHHHcCHHHH-HHHHHHHHHHHHHHHHHHHhcCCCceEECC----CceEEEEEEeCCCCCHHHHHHHHHHh
Confidence 3332222333344322222 5667777888889999999887 6666665 34445667775456788999998877
Q ss_pred CCeEEccCCCCCCCcEEEEeecCC
Q 017726 330 YNLSLGLGLNKVAGKVFRIGHLGH 353 (367)
Q Consensus 330 ~gv~v~~g~~~~~~~~iRi~~~~~ 353 (367)
+||.+.||..+..++++|||+...
T Consensus 330 ~gv~v~pg~~F~~~~~iRis~~~~ 353 (373)
T PRK07324 330 TGVLLVPGNRFDLEGHVRIGYCCD 353 (373)
T ss_pred cCEEEECccccCCCCeEEEEecCC
Confidence 899999996655567899997543
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=242.83 Aligned_cols=326 Identities=13% Similarity=0.140 Sum_probs=237.6
Q ss_pred CCCCChHHHHHHHccCCCCCCCC---------cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCe
Q 017726 16 GPVHIPDQVIRAMNRNNEDYRSP---------AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR 86 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~~~~~---------~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~ 86 (367)
.+.++.+.+++++.++.....++ .......++++.+++++|. +++++++|+++++..++.+++.+||+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~---~~i~~~~g~t~al~~~l~~~~~~gd~ 85 (361)
T cd06452 9 RGGRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM---DEARVTPGAREGKFAVMHSLCEKGDW 85 (361)
T ss_pred cCCCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCC---ceEEEeCCHHHHHHHHHHHhcCCCCE
Confidence 56678999999999987432211 1234578999999999998 24899999999999999999999999
Q ss_pred EEEEeCCcchHHHHHHHHHhCCceEEEeCCCCC--CCCHHHHHHHHhccC---CCCccEEEEEecCCCccccccHHHHHH
Q 017726 87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGE--GAKLDVLASKLAADT---AHTIKAICIVHNETATGVTNNLSKVRK 161 (367)
Q Consensus 87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~d~e~l~~~i~~~~---~~~~~lv~~~~~~n~tG~~~~~~~i~~ 161 (367)
|+++.++|++.. ..++..|++++.++.+.++ .+|++++++++++.. .+++++|++++|+||+|.+.|+++|.+
T Consensus 86 Vl~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~ 163 (361)
T cd06452 86 VVVDGLAHYTSY--VAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAK 163 (361)
T ss_pred EEEcCCcchHHH--HHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHH
Confidence 999999888865 3477889999999987654 889999999987421 026799999999999999999999999
Q ss_pred HHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHh
Q 017726 162 LLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFY 241 (367)
Q Consensus 162 ~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (367)
+|++ +|+++++|++|+.+..+++....++|++++|+||+++++.++|++++++++++++.....+ ++... ...
T Consensus 164 ~~~~--~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~~~~---~~~~~--~~~ 236 (361)
T cd06452 164 VCHE--YGVPLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQM---FKIKE--VEL 236 (361)
T ss_pred HHHH--cCCeEEEECCcccCCcCCCHHHcCCCEEEecCCccccCCCCeEEEEECHHHHHHHhccccc---cccce--eee
Confidence 9999 9999999999998887777777789999999999998777899999999998887654321 11000 000
Q ss_pred hcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCC-----
Q 017726 242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS----- 315 (367)
Q Consensus 242 ~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~----- 315 (367)
.+ .++....+.++.++++.+.+. ++. .++..++++++++.|+++ |++++.+.+ ...+++.++.+.
T Consensus 237 -~~----~~~~~~~~~~~~~al~~~~~~-~~~-~~~~~~~~~~l~~~L~~l~g~~v~~~~~--~~~n~~~~~~~~~~~~~ 307 (361)
T cd06452 237 -LG----CTLRGAPLVTLMASFPHVKER-VKR-WDEEVEKARWFVAELEKIEGIKQLGEKP--KNHDLMFFETPSFDEIA 307 (361)
T ss_pred -ec----cccCchHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHhcCCCeEEECCCC--CCCceEEEEcCCcchhh
Confidence 01 123333334555566554332 333 334455678999999998 988875322 233456666541
Q ss_pred ---CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHhhhhc
Q 017726 316 ---HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQLLFQ 366 (367)
Q Consensus 316 ---~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~l~~ 366 (367)
.....++.++|+++ ||.+. .+..+.++|++..+ ..++.+.+.++|++
T Consensus 308 ~~~~~~~~~~~~~L~~~-gI~~~---~~~~~~~~ri~~~g~~~e~~~~l~~al~~ 358 (361)
T cd06452 308 KKHKRRGYFLYSELKKR-GIHGI---KPGLTRYFKLSTYGLTWEQVEYVVDAFKE 358 (361)
T ss_pred hhccccchhHHHHHHHc-CceEE---cCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 11233699999765 99842 22334589999866 55666777777654
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=238.35 Aligned_cols=311 Identities=18% Similarity=0.151 Sum_probs=242.1
Q ss_pred CCCCChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCc
Q 017726 16 GPVHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQ 94 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~ 94 (367)
.|.++|+.+.+++.+.... +++|+. ...++++.++++++..+++.|++++|+++.+..++++++.+||+|+++.|.|
T Consensus 32 nP~gp~~~~~~~~~~~~~~~~rYPd~--~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~~~~gd~vl~~~Ptf 109 (356)
T COG0079 32 NPYGPPPKVIEAIRAALDKLNRYPDP--DYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTF 109 (356)
T ss_pred CCCCCCHHHHHHHHHHHHhhccCCCC--cHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHhhcCCCEEEEcCCCh
Confidence 6777788888888876543 566664 5779999999999944334588899999999999999999999999999965
Q ss_pred chHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEE
Q 017726 95 FSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLV 174 (367)
Q Consensus 95 ~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~ 174 (367)
..+ ...++..|++++.++..+ +.+|++.+.+.+.+ ++++|++|+||||||...+.++|.+++...+.+.+|++
T Consensus 110 ~~Y--~~~a~~~g~~~~~v~~~~-~~~d~~~~~~~~~~----~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVv 182 (356)
T COG0079 110 SMY--EIAAQLAGAEVVKVPLKE-FRLDLDAILAAIRD----KTKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVI 182 (356)
T ss_pred HHH--HHHHHhcCCeEEEecccc-cccCHHHHHHhhhc----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEE
Confidence 543 355788999999999988 88999999999984 57999999999999999999999999998434899999
Q ss_pred eeeeccCceee--ccc-cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCC
Q 017726 175 DGVSSICAIDF--RMD-EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPY 249 (367)
Q Consensus 175 D~~~~~~~~~~--~~~-~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (367)
||+|.-++.+. ... ..+.-+++-|+||.+ |..| +||++.++++++.+...+. +|
T Consensus 183 DEAY~eF~~~~~~~l~~~~~nlivlRTfSKa~-gLAGlRlGy~ia~~~~i~~l~~vr~--------------------p~ 241 (356)
T COG0079 183 DEAYIEFSPESSLELLKYPPNLIVLRTFSKAF-GLAGLRVGYAIANPELIAALNKVRP--------------------PF 241 (356)
T ss_pred eCchhhcCCchhhhhccCCCCEEEEEecHHhh-hcchhceeeccCCHHHHHHHHHhcC--------------------CC
Confidence 99987554321 111 223358888999988 4666 5999999999999986532 66
Q ss_pred CCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCc-cccCCCccCCCceEEEEcCCCCCHHHHHHHHHh
Q 017726 250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLK-NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQ 328 (367)
Q Consensus 250 ~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 328 (367)
+.+.....+..++++.- + -+++..++..+.++++.+.|+++|+. +.++ . .+++.+++++.. ..++.+.|.+
T Consensus 242 ~v~~~a~~aa~aal~~~-~-~~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS----~-aNFvlv~~~~~~-~~~l~~~L~~ 313 (356)
T COG0079 242 NVSSPALAAAIAALRDA-D-YLEESVERIREERERLYAALKALGLFGVFPS----Q-ANFVLVRVPDAE-AAALAEALLK 313 (356)
T ss_pred CCCHHHHHHHHHHcccH-H-HHHHHHHHHHHHHHHHHHHHHhCCCCeecCC----C-CcEEEEECCCcc-HHHHHHHHHH
Confidence 77776555555555544 2 26788899999999999999999844 5554 3 447778886533 6689999976
Q ss_pred hCCeEEccCCC-CCCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 329 RYNLSLGLGLN-KVAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 329 ~~gv~v~~g~~-~~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
+ ||.++.... +..++++||+ .++.++.+.+.++|.+
T Consensus 314 ~-giivR~~~~~~~~~~~lRit-vgt~een~~ll~AL~~ 350 (356)
T COG0079 314 K-GILVRDCSSVGLLPGYLRIT-VGTPEENDRLLAALRE 350 (356)
T ss_pred C-CEEEEeCCCCCCCCCeEEEE-eCCHHHHHHHHHHHHH
Confidence 6 999997644 4456789998 5666666888877764
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-31 Score=243.20 Aligned_cols=309 Identities=16% Similarity=0.094 Sum_probs=228.2
Q ss_pred CCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcch
Q 017726 17 PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFS 96 (367)
Q Consensus 17 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~ 96 (367)
|.++++.+.+++.+....+.++. ....++|+.+++++|++++ +|++++|+++++..++.+++.+||+|++++|.|..
T Consensus 63 p~~~~~~v~~a~~~~~~~~~Yp~--~~~~~lr~~ia~~~~~~~~-~I~~t~Ga~~~i~~~~~~~~~~gd~Vlv~~P~y~~ 139 (380)
T PLN03026 63 PYGPPPEVLEALGNMKFPYVYPD--PESRRLRAALAEDSGLESE-NILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGM 139 (380)
T ss_pred CCCCCHHHHHHHHhhHhhccCCC--CCHHHHHHHHHHHhCcChh-hEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHH
Confidence 56777888998875322122333 2357899999999998764 59999999999999998888999999999997653
Q ss_pred HHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEee
Q 017726 97 LLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDG 176 (367)
Q Consensus 97 ~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~ 176 (367)
+ ...++..|++++.++.+.++.+|++++++++.. +++++|++++|+||||.++|.+++.++++. . ++|++|+
T Consensus 140 y--~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~---~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~--~-~~vi~De 211 (380)
T PLN03026 140 Y--VFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVET---HKPKLLFLTSPNNPDGSIISDDDLLKILEL--P-ILVVLDE 211 (380)
T ss_pred H--HHHHHHcCCEEEEeecCCCCCcCHHHHHHHHhc---cCCcEEEEeCCCCCCCCCCCHHHHHHHHhc--C-CEEEEEC
Confidence 3 355677899999999877788999999999832 478999999999999999999999999986 4 8999999
Q ss_pred eeccCcee---e-ccccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCC
Q 017726 177 VSSICAID---F-RMDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT 250 (367)
Q Consensus 177 ~~~~~~~~---~-~~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (367)
+|...... . ........+++.|++|.++ .+| +|++++++++++.+..... ++.
T Consensus 212 aY~~~~~~~~~~~~~~~~~~viv~~SfSK~~g-laGlRiGy~~~~~~~i~~l~~~~~--------------------~~~ 270 (380)
T PLN03026 212 AYIEFSTQESRMKWVKKYDNLIVLRTFSKRAG-LAGLRVGYGAFPLSIIEYLWRAKQ--------------------PYN 270 (380)
T ss_pred cchhhcCCcchHHHHHhCCCEEEEecchHhhc-CccccceeeecCHHHHHHHHHhcC--------------------CCC
Confidence 98643211 1 1122345789999999984 555 6999999999887764321 223
Q ss_pred CcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcC-CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhh
Q 017726 251 PSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG-LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQR 329 (367)
Q Consensus 251 ~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 329 (367)
.+.....+..+++.. .+. +++.++.+.++++++.+.|++++ +.+.+ ..+++++++++++.+..++.+.|. +
T Consensus 271 ~~~~~q~aa~~aL~~-~~~-~~~~~~~~~~~r~~l~~~L~~~~~~~~~p-----~~~~f~~~~~~~~~~~~~~~~~l~-~ 342 (380)
T PLN03026 271 VSVAAEVAACAALSN-PKY-LEDVKNALVEERERLFGLLKEVPFLEPYP-----SDANFILCRVTSGRDAKKLKEDLA-K 342 (380)
T ss_pred CCHHHHHHHHHHhhC-HHH-HHHHHHHHHHHHHHHHHHHHHCCCCeECC-----CCCeEEEEECCCCCCHHHHHHHHH-H
Confidence 444433444444432 111 66778888999999999999985 44433 245577888865667889999997 5
Q ss_pred CCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 330 YNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 330 ~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
+||.++++..+..++++||++ +..++.+.+.++|++
T Consensus 343 ~gI~v~~~~~~~~~~~lRis~-~~~~~~~~l~~al~~ 378 (380)
T PLN03026 343 MGVMVRHYNSKELKGYIRVSV-GKPEHTDALMEALKQ 378 (380)
T ss_pred CCeEEEECCCCCCCCEEEEec-CCHHHHHHHHHHHHH
Confidence 599999875443456899995 455556777777664
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=246.45 Aligned_cols=304 Identities=14% Similarity=0.152 Sum_probs=214.0
Q ss_pred CCCCChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHH----HHHhcCC-CC-ceEEecCChhHHHHHHHHccCCCCCeE
Q 017726 16 GPVHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDI----KKIFKTT-SG-TPFLIPTTGTGAWESALTNTLSPGDRI 87 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~l----a~~~~~~-~~-~~v~~~~ggt~al~~~~~~~~~~gd~v 87 (367)
.|.++++.+.+++.+.... ..+|.......++|+.+ ++.+|.+ .+ ++|++|+|+++++..++.+++.+||.|
T Consensus 50 ~~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~~~Gd~V 129 (405)
T PRK06207 50 DAHEPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATVARGDKV 129 (405)
T ss_pred CCCCCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEE
Confidence 3344666777777664322 12232223334455555 4445754 33 569999999999999999999999999
Q ss_pred EEEeCCcchHHHHHHHHHhCCceEEEeCC-----CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHH
Q 017726 88 ISFLIGQFSLLWIDQQQRLNFNVDVVESD-----WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKV 159 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i 159 (367)
++.+|.|+.+. ..++..|.+++.++.+ .++.+|++++++++++ ++++|++++||||||.+++ +++|
T Consensus 130 lv~~P~y~~~~--~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~----~~k~v~l~~P~NPTG~~~s~e~l~~l 203 (405)
T PRK06207 130 AIVQPDYFANR--KLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKA----GVRVFLFSNPNNPAGVVYSAEEIAQI 203 (405)
T ss_pred EEeCCCchhHH--HHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhh----cCeEEEECCCCCCCCcCCCHHHHHHH
Confidence 99999887643 5678889999999875 2467899999999874 5699999999999999997 6668
Q ss_pred HHHHHhcCCCcEEEEeeeeccCcee----eccc----cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCc
Q 017726 160 RKLLDEYRHPALFLVDGVSSICAID----FRMD----EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVR 229 (367)
Q Consensus 160 ~~~~~~~~~~~~vi~D~~~~~~~~~----~~~~----~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~ 229 (367)
.++|++ +|++||+|++|...... .... .....+++.|+||.++ .+| +|+++.++++++++......
T Consensus 204 ~~~a~~--~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~-lpGlRiG~ii~~~~l~~~~~~~~~~- 279 (405)
T PRK06207 204 AALARR--YGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTES-LSGYRLGVAFGSPAIIDRMEKLQAI- 279 (405)
T ss_pred HHHHHH--cCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhcc-CcccceEEEEcCHHHHHHHHHHHhH-
Confidence 888888 99999999998754221 1111 1234589999999995 445 79999999998877643110
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCc
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDT 307 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~ 307 (367)
. ....+.....++..++.. ..+ +++.+++++++++.+.+.|+++ ++.+..+ .+++
T Consensus 280 --------------~---~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p----~gg~ 336 (405)
T PRK06207 280 --------------V---SLRAAGYSQAVLRTWFSE--PDGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAP----QAGS 336 (405)
T ss_pred --------------h---ccCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCC----CeeE
Confidence 0 111222222333333321 112 5667778888899999999887 7776665 4567
Q ss_pred eEEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecC
Q 017726 308 VTAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLG 352 (367)
Q Consensus 308 ~~~~~~~~-~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~ 352 (367)
++|++++. +.+..++++.|.+++||.+.+|..+ ..++++||++..
T Consensus 337 fl~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~ 384 (405)
T PRK06207 337 YLFPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQ 384 (405)
T ss_pred EEEEeCcccCCCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecC
Confidence 88899864 3577899999987779999998543 335789999765
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=244.85 Aligned_cols=301 Identities=14% Similarity=0.081 Sum_probs=215.8
Q ss_pred CChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhc----CC--CCceEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 19 HIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFK----TT--SGTPFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~----~~--~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
+.++.+.+++.+.... ...|.......++|+.++++++ .+ +++.|++|+|+++++..++.+++++||.|+++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~~~gd~vlv~ 121 (383)
T TIGR03540 42 PTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVP 121 (383)
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEEe
Confidence 3466777777653221 1223333345678888887764 42 33358899999999999999999999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHh
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE 165 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~ 165 (367)
+|.|+.+. ..++..|++++.++.+.+ +.+|++++++++. +++++|++++||||||.+++ +++|.++|++
T Consensus 122 ~P~y~~~~--~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~----~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~ 195 (383)
T TIGR03540 122 DPGYPVYR--IGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIA----KKAKLMFINYPNNPTGAVAPLKFFKELVEFAKE 195 (383)
T ss_pred CCCCcchH--HHHHhcCCEEEEEecCcccCCccCHHHHHhhcc----ccceEEEEeCCCCCcCccCCHHHHHHHHHHHHH
Confidence 99877654 457789999999998643 4579999998886 46799999999999999998 5778888998
Q ss_pred cCCCcEEEEeeeeccCce----eec---ccc-ccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechH
Q 017726 166 YRHPALFLVDGVSSICAI----DFR---MDE-WGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~----~~~---~~~-~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (367)
+|+++|+|++|..... ..+ ... ....+++.|++|.+ |.+| +|++++++++++++......
T Consensus 196 --~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~-g~~GlRiG~~i~~~~l~~~~~~~~~~------- 265 (383)
T TIGR03540 196 --YNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTY-NMTGWRIGMAVGNADLIAGLGKVKTN------- 265 (383)
T ss_pred --cCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEeccccc-CCccceeeEEeCCHHHHHHHHHHHHh-------
Confidence 9999999999863321 111 111 13468889999988 4555 79999999998877642110
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS 315 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 315 (367)
. ....+.....+...++....+. +++.++.+.++++.+.+.|++.|+.+..+ .++.++++++++
T Consensus 266 -----~------~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~L~~~~~~~~~~----~~~~~~~~~l~~ 329 (383)
T TIGR03540 266 -----V------DSGVFQAIQYAAIAALNGPQDV-VKEIRKIYQRRRDLLLEALKKIGIDVEKP----KATFYVWVPVPE 329 (383)
T ss_pred -----c------ccCCChHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHHHHHhCCCEecCC----CcceEEEEECCC
Confidence 0 1112222223333333322122 66778888999999999999988877765 456678899877
Q ss_pred CCCHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeec
Q 017726 316 HINSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHL 351 (367)
Q Consensus 316 ~~~~~~l~~~L~~~~gv~v~~g~~~~--~~~~iRi~~~ 351 (367)
+.+..++++.|.+++||.+.+|..+. .++++||++.
T Consensus 330 ~~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~ 367 (383)
T TIGR03540 330 GYTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLT 367 (383)
T ss_pred CCCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEec
Confidence 77888999998777799999985432 2468999974
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-31 Score=240.72 Aligned_cols=307 Identities=11% Similarity=0.019 Sum_probs=222.1
Q ss_pred CCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcc
Q 017726 16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF 95 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~ 95 (367)
.|.++|+.+++++.+.......|.... ..++|+.+++++|++++ +|++|+|+++++..++.+++++||+|++++|.|+
T Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~Y~~~~-~~~Lr~aia~~~~v~~e-~I~it~Gs~~ai~~~~~~l~~~gd~Vli~~P~y~ 130 (370)
T PRK09105 53 CPLGPSPAARDAAARSAALSGRYDLEL-EDDLRTLFAAQEGLPAD-HVMAYAGSSEPLNYAVLAFTSPTAGLVTADPTYE 130 (370)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHhCcChh-hEEEcCChHHHHHHHHHHHcCCCCEEEEeCCChH
Confidence 345678888888876432212232222 77999999999999765 5999999999999999999999999999999776
Q ss_pred hHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEe
Q 017726 96 SLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD 175 (367)
Q Consensus 96 ~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D 175 (367)
.+. ..++..|.+++.++.+.++.+|++++++. . ++++++++++||||||.+++.+++.++++..++++++|+|
T Consensus 131 ~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~-~----~~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvD 203 (370)
T PRK09105 131 AGW--RAADAQGAPVAKVPLRADGAHDVKAMLAA-D----PNAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVD 203 (370)
T ss_pred HHH--HHHHHcCCeEEEecCCCCCCCCHHHHHhc-C----CCCCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEE
Confidence 643 56788999999999987788899999876 3 3679999999999999999999998888764468999999
Q ss_pred eeeccCcee---eccccc-cceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCC
Q 017726 176 GVSSICAID---FRMDEW-GIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPY 249 (367)
Q Consensus 176 ~~~~~~~~~---~~~~~~-~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (367)
++|...... .+.... ...+++.|++|.+ |.+| +|++++++++++++... + .+
T Consensus 204 EaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~~-g~~GlRiG~~v~~~~~i~~l~~~------------------~---~~ 261 (370)
T PRK09105 204 EAYIHFSDAPSVVDLVAQRKDLIVLRTFSKLY-GMAGMRLGLAAARPDLLAKLARF------------------G---HN 261 (370)
T ss_pred CchHHhccCcchHHHHhhCCCEEEEecccHhh-cCCccceeeeecCHHHHHHHHhc------------------C---CC
Confidence 998532211 111111 2347778999998 4666 79999999998877642 0 11
Q ss_pred CCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHh
Q 017726 250 TPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQ 328 (367)
Q Consensus 250 ~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 328 (367)
.++...+.+ +...+.+.+ +++.++++.++++.+.+.|++.|+++..+ .++ +++++++ .+..++++.|.+
T Consensus 262 ~~~~~~~~a---a~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~----~~~-f~~~~~~--~~~~~l~~~L~~ 331 (370)
T PRK09105 262 PLPVPAAAA---GLASLRDPKLVPQRRAENAAVREDTIAWLKKKGYKCTPS----QAN-CFMVDVK--RPAKAVADAMAK 331 (370)
T ss_pred CcCHHHHHH---HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCC----CCc-EEEEeCC--CCHHHHHHHHHH
Confidence 244433333 333333222 66777888999999999999988877665 344 4456663 467899999986
Q ss_pred hCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 329 RYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 329 ~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
+ ||.+..++. ..++++||++. ..++.+.+.++|++
T Consensus 332 ~-gI~v~~~~~-~~~~~~Ris~~-~~~~~~~l~~al~~ 366 (370)
T PRK09105 332 Q-GVFIGRSWP-IWPNWVRVTVG-SEEEMAAFRSAFAK 366 (370)
T ss_pred C-CcEEecCCC-CCCCeEEEEcC-CHHHHHHHHHHHHH
Confidence 5 999954442 23578999954 44455666655543
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-30 Score=222.67 Aligned_cols=310 Identities=13% Similarity=0.064 Sum_probs=239.9
Q ss_pred CCChHHHHHHHccCCCCC-CCC--cHHHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeCC
Q 017726 18 VHIPDQVIRAMNRNNEDY-RSP--AVPALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIG 93 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~~~-~~~--~~~~~~~~~~~~la~~~~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~ 93 (367)
.++|+.+++|+++...+. .+| ...+..+.+.++.++.++.. .++.+++++|.--++..+++++..+||.|++..|-
T Consensus 37 f~~pp~i~~Al~~rvdhGvfGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T~~gd~Vvi~tPv 116 (388)
T COG1168 37 FPTPPEIIEALRERVDHGVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALTKPGDGVVIQTPV 116 (388)
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhCcCCCeeEecCCC
Confidence 467888999999876542 333 23457788888888888875 45679999999999999999999999999999997
Q ss_pred cchHHHHHHHHHhCCceEEEeCCC-CC--CCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcC
Q 017726 94 QFSLLWIDQQQRLNFNVDVVESDW-GE--GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR 167 (367)
Q Consensus 94 ~~~~~~~~~~~~~g~~~~~v~~~~-~~--~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~ 167 (367)
|+.+ ....+..|.++...|+.+ ++ .+|.++||+++.+ +++|++++|+||||+|.+.. +.+|.++|++
T Consensus 117 Y~PF--~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~---~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~k-- 189 (388)
T COG1168 117 YPPF--YNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVD---ERVKLFILCNPHNPTGRVWTKEELRKIAELCLR-- 189 (388)
T ss_pred chHH--HHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhc---CCccEEEEeCCCCCCCccccHHHHHHHHHHHHH--
Confidence 7764 366788899999998863 33 5699999999986 57899999999999999974 7789999999
Q ss_pred CCcEEEEeeeeccCcee----ec---ccc--ccceEEEecCCCcccCCCcc--eeeeeC-HHHHHHhccCCCCceeechH
Q 017726 168 HPALFLVDGVSSICAID----FR---MDE--WGIDVALTGSQKALSLPTGM--GIVCAS-PKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~----~~---~~~--~~~d~~~~s~~K~~~g~~g~--g~~~~~-~~~~~~~~~~~~~~~~~~~~ 235 (367)
||+.||.|+.|+-..+. ++ +.. ....+.+.|++|+|+ ..|+ ++++.+ +++.++...
T Consensus 190 h~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFN-laGL~~a~~Ii~n~~lr~~~~~----------- 257 (388)
T COG1168 190 HGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFN-LAGLKCAYIIISNRELRAKFLK----------- 257 (388)
T ss_pred cCCEEEeecccccccccCCCccchhhcChhhhcceEEEeecccccc-chhhhheeEEecCHHHHHHHHH-----------
Confidence 99999999998754321 11 111 134588889999996 5553 655554 443333332
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCCceEEEEc
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIV 313 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~ 313 (367)
++.... ...+|.+++.|..+|.+.-..+ +++..+.+..|.+++++.|.+. ++++..| .+.++.|+++
T Consensus 258 ----~l~~~~--~~~~n~lg~~A~~aAY~~G~~W-Ld~L~~yl~~N~~~~~~~l~~~~P~v~v~~p----~gTYL~WLD~ 326 (388)
T COG1168 258 ----RLKRNG--LHGPSALGIIATEAAYNQGEPW-LDELLEYLKDNRDYVADFLNKHLPGVKVTEP----QGTYLAWLDC 326 (388)
T ss_pred ----HHHHhc--CCCCchHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHhhCCCcEEecC----CCceeeeeec
Confidence 121111 3358898999999999887777 9999999999999999999995 8999998 5777888888
Q ss_pred CC-CCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCCCCHH
Q 017726 314 PS-HINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNEV 357 (367)
Q Consensus 314 ~~-~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~~~~~ 357 (367)
.. +.+.+++.+.|.++.+|.+.+|..+ ...+++|+.+....+..
T Consensus 327 r~l~l~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~acpr~~L 373 (388)
T COG1168 327 RELGLDDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFACPRAIL 373 (388)
T ss_pred cccCCChHHHHHHHHHhhcEeccCCCccCcCCCceEEEecCCCHHHH
Confidence 33 5677899999999999999998543 34467999976655443
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=243.69 Aligned_cols=311 Identities=14% Similarity=0.065 Sum_probs=220.1
Q ss_pred ChHHHHHHHccCCC--CCCCCcHHHHHHHHHHHHHHHh----cC--CCCceEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 20 IPDQVIRAMNRNNE--DYRSPAVPALTKTLLEDIKKIF----KT--TSGTPFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 20 ~~~~v~~a~~~~~~--~~~~~~~~~~~~~~~~~la~~~----~~--~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
.|..+++++.+... ....|.......++|+.+++++ |. ++++.+++|+|+++++..++.+++++||+|++++
T Consensus 49 ~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~~~gd~Vlv~~ 128 (394)
T PRK05942 49 APQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPS 128 (394)
T ss_pred CCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhCCCCCEEEEcC
Confidence 35556665544221 1223433345568888888877 44 2333488899999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhc
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEY 166 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~ 166 (367)
|.|+.+. ..+...|.+++.++.+.+ +.+|++++++.++ +++|+|++++|+||||.+++ +++|.++|++
T Consensus 129 P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~----~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~- 201 (394)
T PRK05942 129 PAYPAHF--RGPLIAGAQIYPIILKPENDWLIDLSSIPEEVA----QQAKILYFNYPSNPTTATAPREFFEEIVAFARK- 201 (394)
T ss_pred CCCcchH--HHHHHcCCEEEEeecCCccCCccCHHHHHHhcc----ccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHH-
Confidence 9887653 335678999999998643 4689999999886 47799999999999999998 6678888988
Q ss_pred CCCcEEEEeeeeccCcee----ec---ccc-ccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHH
Q 017726 167 RHPALFLVDGVSSICAID----FR---MDE-WGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~~----~~---~~~-~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (367)
+|++||+|++|...... .+ ... ....+++.|++|.++ .+| +|+++.++++++++.....
T Consensus 202 -~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~-~~GlRiG~i~~~~~l~~~l~~~~~--------- 270 (394)
T PRK05942 202 -YEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYN-MAGWRVGFVVGNRHIIQGLRTLKT--------- 270 (394)
T ss_pred -cCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccC-ChhhheeeeecCHHHHHHHHHHHh---------
Confidence 99999999998643321 11 111 134578899999883 444 7999999999888764321
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCC
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH 316 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 316 (367)
. ..++.+.....++..+++... ..+++.++++.++++.+.+.|++.|+.+..+ .++.++|++++.+
T Consensus 271 -------~--~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~----~~~~f~~~~~~~~ 336 (394)
T PRK05942 271 -------N--LDYGIFSALQKAAETALQLPD-SYLQQVQERYRTRRDFLIQGLGELGWNIPPT----KATMYLWVPCPVG 336 (394)
T ss_pred -------h--cccCCCHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHHCCCeecCC----CeeeEEEEECCCC
Confidence 0 011233333344454554322 2367788889999999999998888777665 4666788998766
Q ss_pred CCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 317 INSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 317 ~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
.+..++.+.+.+++||.+.+|..+ ...+++||++.. +.+.+.+.|+
T Consensus 337 ~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~---~~~~l~~~l~ 384 (394)
T PRK05942 337 MGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIA---DCDRLGEALD 384 (394)
T ss_pred CCHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecC---CHHHHHHHHH
Confidence 777888887777779999988543 234689999742 2344444444
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=244.30 Aligned_cols=302 Identities=16% Similarity=0.082 Sum_probs=216.0
Q ss_pred ChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cC--CCCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 20 IPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KT--TSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~--~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
+++.+.+++.+.... ...|....+..++|+.+++++ |. +++++|++|+|+++++..++.+++++||.|++++|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P 147 (413)
T PLN00175 68 GPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAP 147 (413)
T ss_pred CCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 456666666554322 223333344567777777766 43 33335999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCC
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRH 168 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~ 168 (367)
.|..+ ...++..|.+++.++++. ++.+|++++++++. +++|+|++++|+||||.+++ +++|.++|++ +
T Consensus 148 ~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~----~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~--~ 219 (413)
T PLN00175 148 FYDSY--EATLSMAGAKIKTVTLRPPDFAVPEDELKAAFT----SKTRAILINTPHNPTGKMFTREELELIASLCKE--N 219 (413)
T ss_pred CchhH--HHHHHHcCCEEEEEECCcccCCCCHHHHHHhcC----cCceEEEecCCCCCCCcCCCHHHHHHHHHHHHH--c
Confidence 76654 355778899999999864 46889999999987 46799999999999999986 5668888888 9
Q ss_pred CcEEEEeeeeccCcee---e---cccc-ccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeechHHHHHH
Q 017726 169 PALFLVDGVSSICAID---F---RMDE-WGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240 (367)
Q Consensus 169 ~~~vi~D~~~~~~~~~---~---~~~~-~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (367)
+++||+|++|...... . .... .+..+++.|++|.++ ...++|++++++++++.+.....
T Consensus 220 ~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~~l~~~l~~~~~------------- 286 (413)
T PLN00175 220 DVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHS------------- 286 (413)
T ss_pred CcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeeeEeCHHHHHHHHHHHh-------------
Confidence 9999999998754321 1 1111 245789999999995 22337999999999887753211
Q ss_pred hhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC-CC-C
Q 017726 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS-HI-N 318 (367)
Q Consensus 241 ~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~~-~ 318 (367)
. ..++.+.....++..++..... -+++.++.+.++++.+.+.|++.|+.+..+ .+++++|++++. +. +
T Consensus 287 ---~--~~~~~s~~~Q~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p----~g~~f~~~~~~~~~~~~ 356 (413)
T PLN00175 287 ---F--LTFATATPMQWAAVAALRAPES-YYEELKRDYSAKKDILVEGLKEVGFKVYPS----SGTYFVMVDHTPFGFEN 356 (413)
T ss_pred ---h--ccCCCCHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHHHHHCCCeecCC----CeeEEEEEeccccCCCC
Confidence 0 0223444333444444432211 267788899999999999999988877766 456677888632 44 4
Q ss_pred HHHHHHHHHhhCCeEEccCCCCC-----CCcEEEEeecC
Q 017726 319 SSEIVRRAWQRYNLSLGLGLNKV-----AGKVFRIGHLG 352 (367)
Q Consensus 319 ~~~l~~~L~~~~gv~v~~g~~~~-----~~~~iRi~~~~ 352 (367)
..++++.|.+++||.+.||..+. ...++||++..
T Consensus 357 ~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~ 395 (413)
T PLN00175 357 DIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCK 395 (413)
T ss_pred HHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcC
Confidence 67899999878899999984331 24579999764
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=242.86 Aligned_cols=301 Identities=16% Similarity=0.135 Sum_probs=214.1
Q ss_pred ChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhc----C--CCCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 20 IPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFK----T--TSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~----~--~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
.++.+.+++.+.... ...|.......++|+.++++++ . +++++|++|+|+++|+.+++.+++++||.|++++|
T Consensus 34 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vl~~~p 113 (378)
T PRK07682 34 TPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEP 113 (378)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEeCC
Confidence 344556665543221 1223223455677777777774 3 23336999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcC
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR 167 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~ 167 (367)
.|+.+ ...++..|.+++.++.+. ++.+|++++++++. ++++++++++|+||||.+++ +++|.++|++
T Consensus 114 ~y~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~-- 185 (378)
T PRK07682 114 SFVSY--APLVTLAGGVPVPVATTLENEFKVQPAQIEAAIT----AKTKAILLCSPNNPTGAVLNKSELEEIAVIVEK-- 185 (378)
T ss_pred Cchhh--HHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcC----cccEEEEEECCCCCcCcCcCHHHHHHHHHHHHH--
Confidence 88754 355677899998888753 46789999999987 46799999999999999986 6778888998
Q ss_pred CCcEEEEeeeeccCceee------cccc-ccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHH
Q 017726 168 HPALFLVDGVSSICAIDF------RMDE-WGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYI 238 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~~------~~~~-~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (367)
+++++|+|++|......- .... ....+++.|+||.++ .+| +|++++++++++++.....
T Consensus 186 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~GlR~G~~~~~~~~i~~l~~~~~----------- 253 (378)
T PRK07682 186 HDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFA-MTGWRLGFIAAPVYFSEAMLKIHQ----------- 253 (378)
T ss_pred cCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCccccc-ChhhhhhhhhcCHHHHHHHHHHHH-----------
Confidence 999999999987543211 1111 135789999999984 455 7999999999888764210
Q ss_pred HHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcC-CCC
Q 017726 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVP-SHI 317 (367)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~~~ 317 (367)
+..++.+.....+...+++.... .++++++.++++++.+.+.|+++|+.+..+ .+++++|+.++ .+.
T Consensus 254 -------~~~~~~~~~~q~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p----~g~~~~~~~~~~~~~ 321 (378)
T PRK07682 254 -------YSMMCAPTMAQFAALEALRAGND-DVIRMRDSYRKRRNFFVTSFNEIGLTCHVP----GGAFYAFPSISSTGL 321 (378)
T ss_pred -------hhccCCCHHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHHHHHHHHCCCccCCC----CeeEEEEEeccCCCC
Confidence 00122344333333333322111 267788889999999999999998877666 45566777663 356
Q ss_pred CHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecC
Q 017726 318 NSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLG 352 (367)
Q Consensus 318 ~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~ 352 (367)
+..++++.|.+++||.+.+|..+ ..++++||++..
T Consensus 322 ~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~ 358 (378)
T PRK07682 322 SSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYAT 358 (378)
T ss_pred CHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCC
Confidence 78899999876679999998543 235789999764
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-31 Score=230.93 Aligned_cols=285 Identities=15% Similarity=0.127 Sum_probs=216.6
Q ss_pred CCcccccCCCCCChHHHHHHHccCC-----CCCCC-CcHHH--HHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHc
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNN-----EDYRS-PAVPA--LTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN 79 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~-----~~~~~-~~~~~--~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~ 79 (367)
...|++....++.+.+|++++.++. +.|.. |.+.. ..++.|+.+|+++|+++.+ |+||+|+|+++++++..
T Consensus 43 ~~vyld~~at~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~d-IiFts~ATEs~Nlvl~~ 121 (428)
T KOG1549|consen 43 RPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSD-IVFTSGATESNNLVLKG 121 (428)
T ss_pred ccEEEecCcCCCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCc-EEEeCCchHHHHHHHHH
Confidence 3567778888899999999999953 23333 55543 4899999999999999877 99999999999999987
Q ss_pred c-CCCCC----eEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccc
Q 017726 80 T-LSPGD----RIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT 153 (367)
Q Consensus 80 ~-~~~gd----~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~ 153 (367)
+ +..++ .|++.+.+|.+.. +....+..|+++..+|.+.++.+|.+.+++.|+ ++|++|.+.+.+|.+|.+
T Consensus 122 v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~----~~T~lv~I~~Vnn~~gv~ 197 (428)
T KOG1549|consen 122 VARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIR----SKTRLVSIMHVNNEIGVL 197 (428)
T ss_pred hhccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcC----CCceEEEEEecccCcccc
Confidence 4 34555 8999999998875 557778889999999999888899999999999 678999999999999999
Q ss_pred ccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhc--cCCCCcee
Q 017726 154 NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASK--TAKSVRVF 231 (367)
Q Consensus 154 ~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~--~~~~~~~~ 231 (367)
.|+++|.++|++ +++.+++|+||+.|..++|+.+.++|++++|+|||+ ||+|+|++++++.. .++. +...++.
T Consensus 198 ~Pv~EI~~icr~--~~v~v~~DaAQavG~i~vDV~eln~D~~s~s~HK~y-gp~~iGaLYvr~~~-~~~~~~p~~~GGg- 272 (428)
T KOG1549|consen 198 QPVKEIVKICRE--EGVQVHVDAAQAVGKIPVDVQELNADFLSISAHKIY-GPPGIGALYVRRKR-PRLRVEPPLSGGG- 272 (428)
T ss_pred ccHHHHHHHhCc--CCcEEEeehhhhcCCccccHHHcCchheeeeccccc-CCCcceEEEEccCC-CcccccCcccCCc-
Confidence 999999999999 999999999999999999999999999999999998 58889999999721 1111 1111111
Q ss_pred echHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-c-CCccccCCCccCCCceE
Q 017726 232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQKEEWFSDTVT 309 (367)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~ 309 (367)
+...++ .+|.+.+...++..|.+...+.. ........++...+...+.+ . ...+.++.++. -...+
T Consensus 273 -----q~r~~r-----sGT~~~~~~~~~gsA~e~~~~~~-~~~~~~~~~~~~~ll~~i~~~~~~~~~~G~~~~~-~~~~~ 340 (428)
T KOG1549|consen 273 -----QERGLR-----SGTVATPLAVGLGSAAEFVNKEM-AYDEAIIKRLSEKLLMGIGQSLPEVTLNGSGKSR-YPGLV 340 (428)
T ss_pred -----cccccc-----cCCcCchhhhhhHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhhCchhhccCCcccc-cccce
Confidence 112233 44577777789999998887653 22222333455556555544 2 34444443332 22345
Q ss_pred EEEcC
Q 017726 310 AVIVP 314 (367)
Q Consensus 310 ~~~~~ 314 (367)
.|.++
T Consensus 341 ~~~~~ 345 (428)
T KOG1549|consen 341 SLSFP 345 (428)
T ss_pred eeecc
Confidence 55554
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=239.50 Aligned_cols=301 Identities=17% Similarity=0.167 Sum_probs=219.2
Q ss_pred CCChHHHHHHHccCCCC--CCCC----cHHHHHHHHHHHHHHHhcCC--CCceEEecCChhHHHHHHHHccCCCCCeEEE
Q 017726 18 VHIPDQVIRAMNRNNED--YRSP----AVPALTKTLLEDIKKIFKTT--SGTPFLIPTTGTGAWESALTNTLSPGDRIIS 89 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~~--~~~~----~~~~~~~~~~~~la~~~~~~--~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~ 89 (367)
.++++.+.+++.+.... ...| +.....+.+++.+++.+|.. +++++++++|+++++..++.+++.+||.|++
T Consensus 39 ~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv 118 (389)
T PRK05957 39 YPPPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAITDPGDEIIL 118 (389)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCEEEE
Confidence 35677888888764321 1122 23466677777777777874 2456999999999999988888899999999
Q ss_pred EeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhc
Q 017726 90 FLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEY 166 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~ 166 (367)
++|.|+.+. ..++..|++++.++.+.++.+|+|+++++++ +++|+|++++|+||||.++| +++|.++|++
T Consensus 119 ~~P~y~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~----~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~- 191 (389)
T PRK05957 119 NTPYYFNHE--MAITMAGCQPILVPTDDNYQLQPEAIEQAIT----PKTRAIVTISPNNPTGVVYPEALLRAVNQICAE- 191 (389)
T ss_pred eCCCCcCHH--HHHHhcCCEEEEeecCCCCCcCHHHHHHhcC----cCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHH-
Confidence 999877653 3457789999999988778899999999987 46799999999999999998 7788899999
Q ss_pred CCCcEEEEeeeeccCcee----ec---c-ccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHH
Q 017726 167 RHPALFLVDGVSSICAID----FR---M-DEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~~----~~---~-~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (367)
+|+++++|++|...... .. . ......+++.|++|.+ |.+| +|++++++++++++.....
T Consensus 192 -~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~~~~~~~~~~~--------- 260 (389)
T PRK05957 192 -HGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAY-GFASWRIGYMVIPIHLLEAIKKIQD--------- 260 (389)
T ss_pred -cCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhc-cCccceeEEEecCHHHHHHHHHHHh---------
Confidence 99999999998633211 01 1 1223568899999988 4555 7999999999888764311
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh-C-hHHHHHHHHHHHHHHHHHHHHc-CC-ccccCCCccCCCceEEEE
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-G-LENVIERHRRLGKATRLAVEAW-GL-KNCTQKEEWFSDTVTAVI 312 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-g-~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~~~~~~~~~~~~~~ 312 (367)
.+ ...++.. +...+...+.+. + +++.+++++++++.+.+.|++. ++ .+..+ .++.++|++
T Consensus 261 --------~~-~~~~~~~---~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~----~gg~~~~~~ 324 (389)
T PRK05957 261 --------TI-LICPPVV---SQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPA----NGAFYCFLK 324 (389)
T ss_pred --------hc-ccCCCcH---HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCC----CeeEEEEEe
Confidence 00 1112322 223233333321 1 5667777889999999999887 53 44444 456778888
Q ss_pred cCCCCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecC
Q 017726 313 VPSHINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLG 352 (367)
Q Consensus 313 ~~~~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~ 352 (367)
++.+.+..++++.|.+++||.+.+|..+ ..++++||++..
T Consensus 325 ~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~ 366 (389)
T PRK05957 325 VNTDLNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGA 366 (389)
T ss_pred CCCCCChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEec
Confidence 8767788899999987779999998543 224589999743
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-31 Score=241.10 Aligned_cols=312 Identities=17% Similarity=0.121 Sum_probs=219.7
Q ss_pred cccccCC--CCCChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccC
Q 017726 10 NHLFVPG--PVHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTL 81 (367)
Q Consensus 10 ~~~~~~~--p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~ 81 (367)
.+.+..| +.++++.+.+++.+.... ...|.......++|+.+++++ |.. .++++++++|+++++..++.+++
T Consensus 26 ~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~ 105 (382)
T PRK06108 26 VLPLWFGESDLPTPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALV 105 (382)
T ss_pred eEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhc
Confidence 3444443 235577888887774332 122332334456666666654 632 33469999999999999999999
Q ss_pred CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC---CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---
Q 017726 82 SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW---GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN--- 155 (367)
Q Consensus 82 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~---~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~--- 155 (367)
.+||.|++.+|.|+... ..++..|++++.++.+. ++.+|++++++.++ ++++++++++|+||||.+++
T Consensus 106 ~~gd~vl~~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~----~~~~~i~l~~p~NPtG~~~~~~~ 179 (382)
T PRK06108 106 GPGDEVVAVTPLWPNLV--AAPKILGARVVCVPLDFGGGGWTLDLDRLLAAIT----PRTRALFINSPNNPTGWTASRDD 179 (382)
T ss_pred CCCCEEEEeCCCccchH--HHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcC----ccceEEEEECCCCCCCcccCHHH
Confidence 99999999999876543 55778899999999864 34689999999886 46799999999999999986
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeeccCcee--------ecccc-ccceEEEecCCCcccC-CCcceeeeeCHHHHHHhccC
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSSICAID--------FRMDE-WGIDVALTGSQKALSL-PTGMGIVCASPKALEASKTA 225 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~~~~~~--------~~~~~-~~~d~~~~s~~K~~~g-~~g~g~~~~~~~~~~~~~~~ 225 (367)
+++|.++|++ +|+++|+|++|+..... .+... ....+++.|+||.++. +.++|++++++++++++...
T Consensus 180 ~~~l~~~~~~--~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~~~~~~~~ 257 (382)
T PRK06108 180 LRAILAHCRR--HGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPPALGQVLEKL 257 (382)
T ss_pred HHHHHHHHHH--CCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCHHHHHHHHHH
Confidence 5678888888 99999999998754321 11111 1356889999998841 23479999999998877632
Q ss_pred CCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccC
Q 017726 226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWF 304 (367)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~ 304 (367)
.. + . ...++.....+...++....+ .+++.+++++++++.+.+.|++. |+.+..+ .
T Consensus 258 ~~-------------~--~---~~~~~~~~q~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p----~ 314 (382)
T PRK06108 258 IE-------------Y--N---TSCVAQFVQRAAVAALDEGED-FVAELVARLRRSRDHLVDALRALPGVEVAKP----D 314 (382)
T ss_pred HH-------------h--c---ccCCChHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHHHHHHHhCCCCcccCC----C
Confidence 10 0 0 112333322333333332111 16778888999999999999887 8877765 4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecC
Q 017726 305 SDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLG 352 (367)
Q Consensus 305 ~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~ 352 (367)
++.+++++++...+..+++++|.+++||.+.+|... ..++++|+++..
T Consensus 315 ~g~~~~~~l~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~ 364 (382)
T PRK06108 315 GAMYAFFRIPGVTDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR 364 (382)
T ss_pred eeEEEEEeCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC
Confidence 566778888655677899999877789999988532 335789999776
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-31 Score=241.65 Aligned_cols=303 Identities=13% Similarity=0.042 Sum_probs=215.2
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhc----CC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFK----TT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~----~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
++|+.+.+++.+.... ...|.......++|+.++++++ .. .+++|++|+|+++++..++.+++.+||+|++++|
T Consensus 45 ~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p 124 (387)
T PRK08960 45 TTAEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADP 124 (387)
T ss_pred CCCHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhcCCCCEEEEcCC
Confidence 5688888888775432 2233333556788888888874 22 3356999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHH---HHHHHHHhcC
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLS---KVRKLLDEYR 167 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~---~i~~~~~~~~ 167 (367)
+|+.+. ..++..|.+++.++++.+ +.+|+++++++++ ++++++++++|+||||.+++.+ +|.++|++
T Consensus 125 ~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~----~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~-- 196 (387)
T PRK08960 125 GYPCNR--HFLRLVEGAAQLVPVGPDSRYQLTPALVERHWN----ADTVGALVASPANPTGTLLSRDELAALSQALRA-- 196 (387)
T ss_pred CCcchH--HHHHhcCCeEEEEecCcccCCCCCHHHHHHHhC----ccceEEEEECCCCCCCcCcCHHHHHHHHHHHHH--
Confidence 888764 445667999999988654 4689999999887 4568999999999999999854 56667888
Q ss_pred CCcEEEEeeeeccCcee---ecccc-ccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHh
Q 017726 168 HPALFLVDGVSSICAID---FRMDE-WGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFY 241 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~---~~~~~-~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (367)
+|+++++|++|...... .+... ....+++.|+||.++ .+| +|++++++++++.+......
T Consensus 197 ~~~~li~De~Y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~~~~~~~~~~~~~~~~~~------------- 262 (387)
T PRK08960 197 RGGHLVVDEIYHGLTYGVDAASVLEVDDDAFVLNSFSKYFG-MTGWRLGWLVAPPAAVPELEKLAQN------------- 262 (387)
T ss_pred cCCEEEEEccccccccCCCCCChhhccCCEEEEeecccccC-CcccEEEEEEcCHHHHHHHHHHHhh-------------
Confidence 99999999998643211 11111 124588899999884 555 79999999988877542110
Q ss_pred hcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccc-cCCCccCCCceEEEEcCC-CCCH
Q 017726 242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNC-TQKEEWFSDTVTAVIVPS-HINS 319 (367)
Q Consensus 242 ~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~-~~~~ 319 (367)
. ....+.....+...++....+.-+++.++.++++++.+.+.|++.|+.+. .+ .++.++|+++++ ..+.
T Consensus 263 --~---~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p----~g~~f~~~~~~~~~~~~ 333 (387)
T PRK08960 263 --L---YISASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALRELGFGIAVEP----QGAFYLYADISAFGGDA 333 (387)
T ss_pred --h---ccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcCC----CeeEEEEEeccccCCCH
Confidence 0 11233333233333332100112667788888999999999998876542 33 356678888865 3577
Q ss_pred HHHHHHHHhhCCeEEccCCCCC---CCcEEEEeecC
Q 017726 320 SEIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLG 352 (367)
Q Consensus 320 ~~l~~~L~~~~gv~v~~g~~~~---~~~~iRi~~~~ 352 (367)
.++++.|.+++||.+.+|..+. .++++||++..
T Consensus 334 ~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~ 369 (387)
T PRK08960 334 FAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ 369 (387)
T ss_pred HHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC
Confidence 8899888777799999984432 24689999764
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-30 Score=235.04 Aligned_cols=316 Identities=16% Similarity=0.157 Sum_probs=238.5
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCCC-----CCC----cHHHHHHHHHHHHHHHhcCCCCc-eEEecCChhHHHHHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNEDY-----RSP----AVPALTKTLLEDIKKIFKTTSGT-PFLIPTTGTGAWESAL 77 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~~-----~~~----~~~~~~~~~~~~la~~~~~~~~~-~v~~~~ggt~al~~~~ 77 (367)
.+.+...|.....+...++.+....... ..+ ......+++++++++++|.++++ ..++|+|||+++..++
T Consensus 22 ~~~~~g~p~~~~~~~~~~~~~~~~~~~n~gnp~~~~~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~ 101 (380)
T PRK02769 22 QYFNVGYPEAADFDYSALKRFFSFSINNCGDPYSKSNYPLNSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGC 101 (380)
T ss_pred hhcccCCCchhhcCHHHHHHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHH
Confidence 4455666766666545565555543211 111 24567789999999999998544 3589999999988766
Q ss_pred Hcc--CCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc
Q 017726 78 TNT--LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN 155 (367)
Q Consensus 78 ~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~ 155 (367)
.+. ..+++.|+++..+|++.. +.++.+|.+...|+..+++.+|+++|++++++++ .+|.+|++++++|.+|.+.|
T Consensus 102 ~~ar~~~~~~~ii~s~~~H~Sv~--ka~~~lg~~~~~V~~~~~g~id~~~L~~~i~~~~-~~t~lvv~t~gtt~tG~idp 178 (380)
T PRK02769 102 YLARELFPDGTLYYSKDTHYSVS--KIARLLRIKSRVITSLPNGEIDYDDLISKIKENK-NQPPIIFANIGTTMTGAIDN 178 (380)
T ss_pred HHHHHhCCCcEEEeCCCceehHH--HHHHHcCCCCceeccCCCCcCcHHHHHHHHHhCC-CCcEEEEEEeCCCCCcccCC
Confidence 542 357889999999999854 6678889999999988888999999999998753 46899999999999999999
Q ss_pred HHHHHHHHHhcCCC---cEEEEeeeeccCcee-------eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccC
Q 017726 156 LSKVRKLLDEYRHP---ALFLVDGVSSICAID-------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTA 225 (367)
Q Consensus 156 ~~~i~~~~~~~~~~---~~vi~D~~~~~~~~~-------~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~ 225 (367)
+++|.++|++ +| +++++|++++.+..+ +++.. ++|+++.|+||++++|.|+|+++++++..+++...
T Consensus 179 i~~I~~i~~~--~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~-~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~ 255 (380)
T PRK02769 179 IKEIQEILKK--IGIDDYYIHADAALSGMILPFVNNPPPFSFAD-GIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVD 255 (380)
T ss_pred HHHHHHHHHH--hCCCceEEEEEecccceeecccCccccCCccC-CCCEEEECCcccCCCCCCcEEEEEehhhhhhcccC
Confidence 9999999999 87 799999999988775 56655 89999999999998899999999999887765431
Q ss_pred CCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCC
Q 017726 226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFS 305 (367)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 305 (367)
..+... . .....+|.+....++++++++.+...|++++.+++.++++++.+.|++.|+++..+ ..
T Consensus 256 ---~~yl~~------~--d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~g~~~~~~----p~ 320 (380)
T PRK02769 256 ---VDYIGS------R--DQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQANGIPAWRN----PN 320 (380)
T ss_pred ---ccccCC------C--CCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEcC----CC
Confidence 112110 0 11135567777789999999999999999999999999999999999988887764 23
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 306 DTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 306 ~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
..+++|+.|+ +++ .+++.+... +..+||......+.+.+
T Consensus 321 ~~~v~f~~~~----~~~----~~~w~l~~~-------~~~~hi~~~~~~~~~~~ 359 (380)
T PRK02769 321 SITVVFPCPS----ERI----WKKWHLATS-------GNQAHIITMPHHNKQQI 359 (380)
T ss_pred ceEEEEcCCC----HHH----HhCeeEccc-------CCEEEEEECCCCCHHHH
Confidence 3466676542 233 234333322 23799998888876543
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=237.85 Aligned_cols=309 Identities=14% Similarity=0.151 Sum_probs=228.6
Q ss_pred CCCCChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCC
Q 017726 16 GPVHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIG 93 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~ 93 (367)
.|.++|+.+++++.+.... ...|.. ....++|+.++++++.+.+++|++++|+++++..++.+++.+||.|+++.|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~~~~gd~vlv~~P~ 114 (356)
T PRK04870 36 NPYRLPAELRAELGERLAEVALNRYPD-PRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLALACAKPGATVLAPEPG 114 (356)
T ss_pred CCCCCCHHHHHHHHHHhhccccccCCC-CCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 3567899999999875432 222322 3457999999999998765469999999999999998888999999999997
Q ss_pred cchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEE
Q 017726 94 QFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFL 173 (367)
Q Consensus 94 ~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi 173 (367)
|+.+ ...++..|++++.+++++++.+|++++++++++ +++++|++++|+||||.+++.+++.++++. .++++|
T Consensus 115 y~~~--~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~---~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~--~~~~ii 187 (356)
T PRK04870 115 FVMY--RMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAE---HRPALVFLAYPNNPTGNLFDDADVERIIEA--APGLVV 187 (356)
T ss_pred HHHH--HHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhc---CCCCEEEEcCCCCCCCCCCCHHHHHHHHHH--CCCEEE
Confidence 6653 466888999999999987788999999999874 367999999999999999999999999987 588999
Q ss_pred EeeeeccCcee---eccccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccC
Q 017726 174 VDGVSSICAID---FRMDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP 248 (367)
Q Consensus 174 ~D~~~~~~~~~---~~~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (367)
+|++|...... .........+++.|++| + +.+| +|++++++++++++..... .
T Consensus 188 ~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~-~~~GlRiG~~i~~~~~i~~~~~~~~--------------------~ 245 (356)
T PRK04870 188 VDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-L-GLAGLRLGYLAGHPAWIAELDKVRP--------------------P 245 (356)
T ss_pred EECCchhhcCcchHHHHhhCCCEEEEecchh-h-hhHHHhhhhhhCCHHHHHHHHHccC--------------------C
Confidence 99998643211 01222235689999999 5 4555 7999999999888764321 1
Q ss_pred CCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHH
Q 017726 249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAW 327 (367)
Q Consensus 249 ~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 327 (367)
+..+.....+...+++.. + .+++.+++++++++.+.+.|+++ |+.+.++ .+.+++++++ +..++.+.|.
T Consensus 246 ~~~~~~~q~~a~~~l~~~-~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~l~ 315 (356)
T PRK04870 246 YNVNVLTQATALFALEHV-D-VLDAQAAQLRAERTRLAAALAALPGVTVFPS-----AANFILVRVP---DAAAVFDGLK 315 (356)
T ss_pred CcCCHHHHHHHHHHHhCH-H-HHHHHHHHHHHHHHHHHHHHHhCCCcEECCC-----CCeEEEEECC---CHHHHHHHHH
Confidence 224433333333333321 1 26777888899999999999987 8765432 3457888874 5678888885
Q ss_pred hhCCeEEccCCCC--CCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 328 QRYNLSLGLGLNK--VAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 328 ~~~gv~v~~g~~~--~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
++||.++++... ..++++||++ +..++.+.+..+|++
T Consensus 316 -~~gI~v~~~~~f~~~~~~~iRis~-~~~~~~~~l~~al~~ 354 (356)
T PRK04870 316 -TRGVLVKNLSGMHPLLANCLRVTV-GTPEENAQFLAALKA 354 (356)
T ss_pred -HCCEEEEECCCCCCCCCCeEEEeC-CCHHHHHHHHHHHHH
Confidence 569999987543 2356899995 456666777776664
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=230.36 Aligned_cols=315 Identities=18% Similarity=0.143 Sum_probs=226.2
Q ss_pred CChHHHHHHHccCCCC------CCCCcHHHHHHHHHHHHHHHhcCC--CCceEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 19 HIPDQVIRAMNRNNED------YRSPAVPALTKTLLEDIKKIFKTT--SGTPFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~------~~~~~~~~~~~~~~~~la~~~~~~--~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
+.|+-+.+++.+.... .++++..++.+.+++++++++|.. +.++|++|.|+.+++..++++++++||+|++.
T Consensus 44 ~~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~ 123 (420)
T KOG0257|consen 44 PPPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLNPGDEVIVF 123 (420)
T ss_pred CCcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcCCCCEEEEe
Confidence 5566666666664322 346777889999999999988864 44569999999999999999999999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCC--------CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHH
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESD--------WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKV 159 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~--------~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i 159 (367)
.|-+.++. ...+..|...+.|+.. .+|.+|.++++.+++ +|||+|++|+||||||.+.+ +++|
T Consensus 124 eP~fd~Y~--~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t----~kTk~Ii~ntPhNPtGkvfsReeLe~i 197 (420)
T KOG0257|consen 124 EPFFDCYI--PQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKIT----EKTKAIILNTPHNPTGKVFSREELERI 197 (420)
T ss_pred cCcchhhh--hHHhhcCCcceeeccccccccccCccccCChHHHHhhcc----CCccEEEEeCCCCCcCcccCHHHHHHH
Confidence 99666654 4467788888888876 357889999999999 57899999999999999986 7789
Q ss_pred HHHHHhcCCCcEEEEeeeeccCcee--------eccccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCc
Q 017726 160 RKLLDEYRHPALFLVDGVSSICAID--------FRMDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVR 229 (367)
Q Consensus 160 ~~~~~~~~~~~~vi~D~~~~~~~~~--------~~~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~ 229 (367)
+++|++ ||++||.|++|.....+ .....+...+-++|++|+++ ..| +|++++++.++..+.+...+
T Consensus 198 a~l~~k--~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~-~TGWrlGW~igp~~L~~~~~~vh~~- 273 (420)
T KOG0257|consen 198 AELCKK--HGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFG-VTGWRLGWAIGPKHLYSALFPVHQN- 273 (420)
T ss_pred HHHHHH--CCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceee-eeeeeeeeeechHHhhhhHHHHhhc-
Confidence 999999 99999999998653321 12233457789999999994 776 79999977766655543211
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH----HhC---hHHHHHHHHHHHHHHHHHHHHcCCccccCCCc
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF----EEG---LENVIERHRRLGKATRLAVEAWGLKNCTQKEE 302 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~----~~g---~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 302 (367)
..++.+.....|..++++.-. ..| +.++.+.++++++.+.+.|.++|+++..+
T Consensus 274 -----------------~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~lg~~v~~p--- 333 (420)
T KOG0257|consen 274 -----------------FVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEELGLKVTGP--- 333 (420)
T ss_pred -----------------cccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccC---
Confidence 111222222233333333222 121 44588899999999999999999999998
Q ss_pred cCCCceEEEEcC--------CCC----CHHHHHHHHHhhCCeEEccCCCCCCCc-------EEEEeecCCCCHHHHHHhh
Q 017726 303 WFSDTVTAVIVP--------SHI----NSSEIVRRAWQRYNLSLGLGLNKVAGK-------VFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 303 ~~~~~~~~~~~~--------~~~----~~~~l~~~L~~~~gv~v~~g~~~~~~~-------~iRi~~~~~~~~~~~~~~~ 363 (367)
.+..+++..++ .++ +.-.++.+|.++.|+.+.|+..+.... .+|+++....+..+...+.
T Consensus 334 -~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~~k~~~~L~~a~e~ 412 (420)
T KOG0257|consen 334 -EGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCFCKADETLRKAIER 412 (420)
T ss_pred -CCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45666777765 111 334578899988899998876544332 3566554444444444443
Q ss_pred h
Q 017726 364 L 364 (367)
Q Consensus 364 l 364 (367)
|
T Consensus 413 l 413 (420)
T KOG0257|consen 413 L 413 (420)
T ss_pred H
Confidence 3
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=236.96 Aligned_cols=300 Identities=16% Similarity=0.072 Sum_probs=213.6
Q ss_pred CChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHh----cCC--CCceEEecCChhHHHHHHHHccCCCC---CeEEE
Q 017726 19 HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIF----KTT--SGTPFLIPTTGTGAWESALTNTLSPG---DRIIS 89 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~--~~~~v~~~~ggt~al~~~~~~~~~~g---d~vl~ 89 (367)
++++.+.+++.+.......|.......++|+.+++++ |.+ ++++|++|+|+++++..++.+++++| |.|++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~ 92 (350)
T TIGR03537 13 PTPPFIRKALIDAVPEVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIF 92 (350)
T ss_pred CCCHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHcCCCCCCceEEE
Confidence 4466778887764332223333344567778887776 643 33269999999999999998888887 69999
Q ss_pred EeCCcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHH
Q 017726 90 FLIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLD 164 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~ 164 (367)
+.|.|+.+. ..++..|++++.++.+. ++.+|++++++++. +++|++++++|+||||.++| +++|.++|+
T Consensus 93 ~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~----~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~ 166 (350)
T TIGR03537 93 GTPGYPVYE--RGALFAGGEPTAVKLKKEDGFLLRLEKVEKSIL----EETKIVWINYPHNPTGATAPRSYLKETIAMCR 166 (350)
T ss_pred cCCCCcchH--HHHHhcCCEEEEcccCcccCCccCHHHHHHhhh----hccEEEEEeCCCCCcCcccCHHHHHHHHHHHH
Confidence 999877653 55788999999999863 35689999999987 46799999999999999998 778888898
Q ss_pred hcCCCcEEEEeeeeccCce---eeccc--cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHH
Q 017726 165 EYRHPALFLVDGVSSICAI---DFRMD--EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDY 237 (367)
Q Consensus 165 ~~~~~~~vi~D~~~~~~~~---~~~~~--~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (367)
+ +|+++|+|++|..... ..+.. .....+++.|++|.++ .+| +|+++.++++++++......
T Consensus 167 ~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g-~~GlRiG~~~~~~~~~~~~~~~~~~--------- 234 (350)
T TIGR03537 167 E--HGIILCSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRSG-MTGYRSGFVAGDEKLISFLRKLRAN--------- 234 (350)
T ss_pred H--cCcEEEEeccccccccCCCCCchhhcCcCCEEEEeecccccC-CccccceeeecCHHHHHHHHHHHHh---------
Confidence 8 9999999999864321 11111 1234588889999883 444 69999998888777642110
Q ss_pred HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCC
Q 017726 238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI 317 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 317 (367)
+ + . +.+.....++..++. .+..++++++++.++.+.+.+.|++.|+++..+ .++.++++++|++.
T Consensus 235 ---~--~---~-~~~~~~q~~~~~~l~--~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~~----~g~~~~~~~~~~~~ 299 (350)
T TIGR03537 235 ---F--G---V-ASPDFVQAAAKAAWS--DDNHVLERRKIFKRKRDLFIEFFNKVGLEYLYP----DATFYLWVKVPSGI 299 (350)
T ss_pred ---h--c---c-CCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC----CeEEEEEEECCCCC
Confidence 0 1 1 122222222222322 112256778888999999999999988776665 45667788887666
Q ss_pred CHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecC
Q 017726 318 NSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLG 352 (367)
Q Consensus 318 ~~~~l~~~L~~~~gv~v~~g~~~~--~~~~iRi~~~~ 352 (367)
+..++++.|.+ +||.+.+|..+. .++++||++..
T Consensus 300 ~~~~l~~~L~~-~gv~v~~g~~f~~~~~~~~Ri~~~~ 335 (350)
T TIGR03537 300 DAKDYALRLLE-NGIVVAPGENFGSGEEGYVRVALVP 335 (350)
T ss_pred CHHHHHHHHHH-CCEEEcCchhhCCCCCCEEEEEecC
Confidence 78899999976 599999985432 35789999753
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-30 Score=237.92 Aligned_cols=301 Identities=15% Similarity=0.095 Sum_probs=212.4
Q ss_pred ChHHHHHHHccCC-CCCCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeCC
Q 017726 20 IPDQVIRAMNRNN-EDYRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIG 93 (367)
Q Consensus 20 ~~~~v~~a~~~~~-~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~ 93 (367)
.++.+++++.+.. .....|.......++|+.+++++ |.. .++++++|+|+++++..++.+++.+||+|++++|.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~ 122 (384)
T PRK06348 43 TDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPY 122 (384)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 3455655444321 12233433344567888888877 322 33569999999999999999999999999999997
Q ss_pred cchHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCC
Q 017726 94 QFSLLWIDQQQRLNFNVDVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRH 168 (367)
Q Consensus 94 ~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~ 168 (367)
|+.+. ..++..|.+++.++.. .++.+|+++++++++ +++++|++++|+||||.+++ +++|.++|++ +
T Consensus 123 y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~--~ 194 (384)
T PRK06348 123 FTPYK--DQIEMVGGKPIILETYEEDGFQINVKKLEALIT----SKTKAIILNSPNNPTGAVFSKETLEEIAKIAIE--Y 194 (384)
T ss_pred CcchH--HHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhC----cCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHH--C
Confidence 76643 5567789998888864 345689999999887 46799999999999999997 5667778888 9
Q ss_pred CcEEEEeeeeccCcee---ec---ccc-ccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeechHHHHHH
Q 017726 169 PALFLVDGVSSICAID---FR---MDE-WGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240 (367)
Q Consensus 169 ~~~vi~D~~~~~~~~~---~~---~~~-~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (367)
+++||+|++|...... .+ ... .+..+++.|+||.++ ...++|++++++++++.+.....
T Consensus 195 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~~~~~~~~~~~~------------- 261 (384)
T PRK06348 195 DLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPDYIIETAKIINE------------- 261 (384)
T ss_pred CeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCccccceeeecCHHHHHHHHHHHH-------------
Confidence 9999999998754321 11 111 235688999999985 23347999999998777653210
Q ss_pred hhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCC-CCC
Q 017726 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS-HIN 318 (367)
Q Consensus 241 ~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~~ 318 (367)
. ..++++.....++..++....+. ++++++.++++++.+.+.|++. ++.+..+ .+++++|++++. +.+
T Consensus 262 ---~--~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p----~gg~~~~~~~~~~~~~ 331 (384)
T PRK06348 262 ---G--ICFSAPTISQRAAIYALKHRDTI-VPLIKEEFQKRLEYAYKRIESIPNLSLHPP----KGSIYAFINIKKTGLS 331 (384)
T ss_pred ---h--ccCCCCHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHhcCCCceeccC----CeeEEEEEecccCCCC
Confidence 1 12234443334444444332222 5677888888999999999887 6666655 466678888863 568
Q ss_pred HHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeec
Q 017726 319 SSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHL 351 (367)
Q Consensus 319 ~~~l~~~L~~~~gv~v~~g~~~~--~~~~iRi~~~ 351 (367)
..++++.+.+++||.+.+|..+. ..+++||++.
T Consensus 332 ~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~ 366 (384)
T PRK06348 332 SVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACT 366 (384)
T ss_pred HHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEec
Confidence 88999998777899999885432 2468999974
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=239.55 Aligned_cols=305 Identities=14% Similarity=0.112 Sum_probs=214.3
Q ss_pred ChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhc----CC--CCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 20 IPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFK----TT--SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~----~~--~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
.++.+.+++.+.... ...|.......++|+.++++++ .. ++++|++|+|+++++.+++.+++.+||.|++++|
T Consensus 44 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vl~~~p 123 (391)
T PRK07309 44 TPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAP 123 (391)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEeCC
Confidence 355566666553221 1223333445678888888764 32 3356999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCC
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRH 168 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~ 168 (367)
.|... ...++..|.+++.++.+.+ +.+|++.+++++++.. ++++++++++|+||||.+++ +++|.++|++ +
T Consensus 124 ~y~~~--~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~-~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~--~ 198 (391)
T PRK07309 124 AYPGY--EPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQG-DKLKAVILNYPANPTGVTYSREQIKALADVLKK--Y 198 (391)
T ss_pred CCcch--HHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccC-CCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHH--c
Confidence 87764 3567788999999998653 5789999999987532 36899999999999999986 7778888888 9
Q ss_pred CcEEEEeeeeccCcee----eccc--cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHH
Q 017726 169 PALFLVDGVSSICAID----FRMD--EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240 (367)
Q Consensus 169 ~~~vi~D~~~~~~~~~----~~~~--~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (367)
++++|+|++|...... .+.. .....+++.|+||.++ .+| +|++++++++++++.....
T Consensus 199 ~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~GlRvG~~v~~~~~~~~~~~~~~------------- 264 (391)
T PRK07309 199 DIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHA-MTGWRIGLIFAPAEFTAQLIKSHQ------------- 264 (391)
T ss_pred CcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhcc-CccceeEEEEeCHHHHHHHHHHHh-------------
Confidence 9999999998754321 1111 1134588999999984 445 6999999999887764210
Q ss_pred hhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCC--C
Q 017726 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI--N 318 (367)
Q Consensus 241 ~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~ 318 (367)
+...+++.....++..+++....+ ....+++++++++++.+.|++.|+.+..+ .++.++|+++|++. +
T Consensus 265 -----~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~p----~gg~~~~~~l~~~~~~~ 334 (391)
T PRK07309 265 -----YLVTAATTMAQFAAVEALTNGKDD-ALPMKKEYIKRRDYIIEKMTDLGFKIIKP----DGAFYIFAKIPAGYNQD 334 (391)
T ss_pred -----hcccCCChHHHHHHHHHHhCChhH-HHHHHHHHHHHHHHHHHHHHHCCCeecCC----CeeEEEEEECCCCCCCC
Confidence 001123333333333333321111 34556777888999999999988877766 45666778886543 5
Q ss_pred HHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeecCC
Q 017726 319 SSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHLGH 353 (367)
Q Consensus 319 ~~~l~~~L~~~~gv~v~~g~~--~~~~~~iRi~~~~~ 353 (367)
..++++.|.++.||.+.+|.. ...+++|||++...
T Consensus 335 ~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~ 371 (391)
T PRK07309 335 SFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAAS 371 (391)
T ss_pred HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCC
Confidence 678888877677999999854 33457899997653
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-30 Score=239.23 Aligned_cols=299 Identities=13% Similarity=0.079 Sum_probs=213.4
Q ss_pred hHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHh----cC--CCCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 21 PDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIF----KT--TSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~----~~--~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
++.+.+++.+.... ...|.......++|+++++++ |. +++++|++|+|+++++..++.+++.+||.|++++|
T Consensus 47 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~~~gd~vlv~~P 126 (389)
T PRK08068 47 PEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDP 126 (389)
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhCCCCCEEEEcCC
Confidence 45567776654322 123333345678888888887 53 33325999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccH---HHHHHHHHhcC
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL---SKVRKLLDEYR 167 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~---~~i~~~~~~~~ 167 (367)
.|+.+. ..++..|++++.++++. ++.+|++++++.+. +++++|++++||||||.+++. ++|.++|++
T Consensus 127 ~y~~~~--~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~----~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~-- 198 (389)
T PRK08068 127 GYPDYL--SGVALARAQFETMPLIAENNFLPDYTKIPEEVA----EKAKLMYLNYPNNPTGAVATKAFFEETVAFAKK-- 198 (389)
T ss_pred CCcchH--HHHHhcCCEEEEeecccccCCCCCHHHHHHhcc----ccceEEEEECCCCCCCCcCCHHHHHHHHHHHHH--
Confidence 887653 45678999999999874 35678999998886 467999999999999999986 567778888
Q ss_pred CCcEEEEeeeeccCce----eecc---c-cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHH
Q 017726 168 HPALFLVDGVSSICAI----DFRM---D-EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDY 237 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~----~~~~---~-~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (367)
++++||+|++|..... +.+. . ..+..+++.|+||.++ .+| +|+++.++++++.+......
T Consensus 199 ~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g-~~GlRiG~~~~~~~l~~~l~~~~~~--------- 268 (389)
T PRK08068 199 HNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFN-MAGWRVAFAVGNESVIEAINLLQDH--------- 268 (389)
T ss_pred cCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccC-CccceeEeEecCHHHHHHHHHHHhh---------
Confidence 9999999999864221 1111 1 1234688999999993 444 79999999998877643110
Q ss_pred HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCC
Q 017726 238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI 317 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 317 (367)
+...+++..+ .++..++..-. .-+++.++++.++++.+.+.|++.|+.+..+ .++++++++++++.
T Consensus 269 --------~~~~~~~~~q-~~~~~~l~~~~-~~~~~~~~~~~~~r~~~~~~L~~~g~~~~~~----~g~~~~~v~~~~~~ 334 (389)
T PRK08068 269 --------LFVSLFGAIQ-DAAIEALLSDQ-SCVAELVARYESRRNAFISACREIGWEVDAP----KGSFFAWMPVPKGY 334 (389)
T ss_pred --------ccCCCChHHH-HHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHHCCCcccCC----CeeEEEEEECCCCC
Confidence 0011222222 12222222111 2267788889999999999999988776665 46667788887667
Q ss_pred CHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeec
Q 017726 318 NSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHL 351 (367)
Q Consensus 318 ~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~ 351 (367)
+..++.+.|.+++||.+.+|..+ ..++++||++.
T Consensus 335 ~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~ 370 (389)
T PRK08068 335 TSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLL 370 (389)
T ss_pred CHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEc
Confidence 88899999987789999998542 23568999984
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-31 Score=241.49 Aligned_cols=302 Identities=13% Similarity=0.071 Sum_probs=216.6
Q ss_pred ChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeCC
Q 017726 20 IPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIG 93 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~ 93 (367)
+++.+.+++.+.... ..+|.......++|+.+++++ |.. .++++++|+|+++++..++.+++.+||.|++++|.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~ 126 (391)
T PRK08361 47 TPKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPA 126 (391)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 356777776664322 122333345668888888887 432 23469999999999999999999999999999998
Q ss_pred cchHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCC
Q 017726 94 QFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRH 168 (367)
Q Consensus 94 ~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~ 168 (367)
|++.. ..++..|++++.++++.+ +.+|+++++++++ ++++++++++|+||||.++| +++|.++|++ +
T Consensus 127 y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~----~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~--~ 198 (391)
T PRK08361 127 FVCYV--EDAKIAEAKPIRIPLREENEFQPDPDELLELIT----KRTRMIVINYPNNPTGATLDKEVAKAIADIAED--Y 198 (391)
T ss_pred CcccH--HHHHHcCCEEEEEecCCccCCCCCHHHHHHhcc----cccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHH--c
Confidence 77643 556778999999998753 4689999999987 46799999999999999999 7788888999 9
Q ss_pred CcEEEEeeeeccCcee----eccc--cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHH
Q 017726 169 PALFLVDGVSSICAID----FRMD--EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240 (367)
Q Consensus 169 ~~~vi~D~~~~~~~~~----~~~~--~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (367)
++++|+|++|...... .+.. ....++++.|+||.++ .+| +|++++++++++++.....
T Consensus 199 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~GlRiG~~~~~~~~~~~~~~~~~------------- 264 (391)
T PRK08361 199 NIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFA-MTGWRLGFVIAPEQVIKDMIKLHA------------- 264 (391)
T ss_pred CeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcC-CcHhhhhhhccCHHHHHHHHHHHh-------------
Confidence 9999999998654221 1111 1246789999999984 556 7999999998877653210
Q ss_pred hhcCCccCCCCcHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCC-CC
Q 017726 241 YNLGTFWPYTPSIQLLYGLRAALDLIFE-EGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS-HI 317 (367)
Q Consensus 241 ~~~~~~~~~~~~~~~~~al~~al~~~~~-~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~ 317 (367)
. . .+..+.....++..++..-.. ..+++.+++++++++.+.+.|+++ |+.+..+ .+++++|++++. +.
T Consensus 265 ~--~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p----~g~~~~~~~l~~~~~ 335 (391)
T PRK08361 265 Y--I---IGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEP----KGAFYVFANIDETGM 335 (391)
T ss_pred h--h---ccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCC----CEEEEEEEECCCCCC
Confidence 0 0 112333222222223321111 126778888899999999999987 7777666 456678888864 56
Q ss_pred CHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecC
Q 017726 318 NSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLG 352 (367)
Q Consensus 318 ~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~ 352 (367)
+..++.+.|.+++||.+.+|..+ ..++++||++..
T Consensus 336 ~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~ 372 (391)
T PRK08361 336 SSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYAT 372 (391)
T ss_pred CHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecC
Confidence 78899999887789999998543 235789999764
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=236.46 Aligned_cols=307 Identities=14% Similarity=0.138 Sum_probs=223.7
Q ss_pred CCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcch
Q 017726 17 PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFS 96 (367)
Q Consensus 17 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~ 96 (367)
|.+.|+.+++++.+.......|.... ..++|+.++++++++++ ++++++|+++++..++.+++.+||+|++++|.|..
T Consensus 30 ~~~~~~~~~~a~~~~~~~~~~y~~~~-~~~lr~~ia~~~~~~~~-~i~~~~G~~~~l~~~~~~l~~~gd~v~~~~p~y~~ 107 (346)
T TIGR01141 30 PFGPPPKAKEALRAEADKLHRYPDPD-PAELKQALADYYGVDPE-QILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSM 107 (346)
T ss_pred CCCCCHHHHHHHHHhHHHhhcCCCCC-HHHHHHHHHHHhCcChH-HEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCHHH
Confidence 56778889999998643322222112 37899999999998654 59999999999998888888999999999986543
Q ss_pred HHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEee
Q 017726 97 LLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDG 176 (367)
Q Consensus 97 ~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~ 176 (367)
+...++..|++++.++.+.++.+|++++++++. +++++|++++|+||||.++|.+++.++|+...+++++++|+
T Consensus 108 --~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~ 181 (346)
T TIGR01141 108 --YEISAKIHGAEVVKVPLDEDGQLDLEDILVAID----DKPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDE 181 (346)
T ss_pred --HHHHHHHcCCeEEEeccCCCCCCCHHHHHHhcC----CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEEC
Confidence 335567889999999998888899999999875 46799999999999999999999999999833599999999
Q ss_pred eeccCcee---ecc-ccccceEEEecCCCcccC-CCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCC
Q 017726 177 VSSICAID---FRM-DEWGIDVALTGSQKALSL-PTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTP 251 (367)
Q Consensus 177 ~~~~~~~~---~~~-~~~~~d~~~~s~~K~~~g-~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (367)
+|+..... .+. .....++++.|++|+++. +.++|++++++++++++..... .++.
T Consensus 182 ~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~--------------------~~~~ 241 (346)
T TIGR01141 182 AYGEFSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAEIIDALNKVRA--------------------PFNL 241 (346)
T ss_pred chhhhcCCccHHHHHhhCCCEEEEehhhHhhhchhhhceeeecCHHHHHHHHhccC--------------------CCCC
Confidence 98732211 111 112345888899999942 2337999999999888764311 1223
Q ss_pred cHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhh
Q 017726 252 SIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQR 329 (367)
Q Consensus 252 ~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 329 (367)
+...+.+ +...+...+ +++.+++++++++.+.+.|+++ |+++.++ .+.++++.++. +.+++.++|.+
T Consensus 242 ~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-----~g~~~~~~~~~--~~~~~~~~L~~- 310 (346)
T TIGR01141 242 SRLAQAA---AIAALRDDDFIEKTVEEINAERERLYDGLKKLPGLEVYPS-----DANFVLIRFPR--DADALFEALLE- 310 (346)
T ss_pred CHHHHHH---HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEECCC-----cCCEEEEecCC--CHHHHHHHHHH-
Confidence 3333233 333333322 6778889999999999999998 8876543 34578888853 77899999975
Q ss_pred CCeEEccCCCC-CCCcEEEEeecCCCCHHHHHHhh
Q 017726 330 YNLSLGLGLNK-VAGKVFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 330 ~gv~v~~g~~~-~~~~~iRi~~~~~~~~~~~~~~~ 363 (367)
+||.+.+|... ..++++|+|+. +.++.+...++
T Consensus 311 ~gI~v~~g~~f~~~~~~iRls~~-~~~~i~~~~~~ 344 (346)
T TIGR01141 311 KGIIVRDLNSYPGLPNCLRITVG-TREENDRFLAA 344 (346)
T ss_pred CCeEEEeCCCcCCCCCeEEEecC-CHHHHHHHHHH
Confidence 59999988542 12678999964 43444444443
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-30 Score=236.65 Aligned_cols=318 Identities=14% Similarity=0.107 Sum_probs=228.4
Q ss_pred CcccccCC--CCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCe
Q 017726 9 KNHLFVPG--PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR 86 (367)
Q Consensus 9 ~~~~~~~~--p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~ 86 (367)
+.+.+.-+ |.++++.+.+++.+.......|... ...++|+.+++++++++ ++|++|+|+++++..++.+++++||.
T Consensus 33 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~-~~~~lr~~ia~~~~~~~-~~i~~t~G~~~~l~~~~~~l~~~gd~ 110 (367)
T PRK02731 33 DIIKLASNENPLGPSPKAIEAIRAAADELHRYPDG-SGFELKAALAEKFGVDP-ERIILGNGSDEILELLARAYLGPGDE 110 (367)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-cHHHHHHHHHHHhCcCH-HHEEEcCCHHHHHHHHHHHhcCCCCE
Confidence 34445443 3445677888777643221222111 13689999999999876 45999999999999988888899999
Q ss_pred EEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhc
Q 017726 87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY 166 (367)
Q Consensus 87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~ 166 (367)
|+++.|.|.... ..++..|++++.++.+ ++.+|+++++++++ +++++|++++|+||||.++|.+++.++++..
T Consensus 111 vl~~~p~y~~~~--~~~~~~g~~~~~~~~~-~~~~~~~~l~~~~~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~ 183 (367)
T PRK02731 111 VIYSEHGFAVYP--IAAQAVGAKPVEVPAK-DYGHDLDAMLAAVT----PRTRLVFIANPNNPTGTYLPAEEVERFLAGV 183 (367)
T ss_pred EEEecCCHHHHH--HHHHHcCCeEEEeccc-CCCCCHHHHHHHhC----CCCcEEEEeCCCCCCCcCCCHHHHHHHHHhC
Confidence 999999765433 3467789999999884 56789999999987 4679999999999999999999999999884
Q ss_pred CCCcEEEEeeeeccCcee------eccc-cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHH
Q 017726 167 RHPALFLVDGVSSICAID------FRMD-EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDY 237 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~~------~~~~-~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (367)
++++++++|++|...... ++.. .....+++.|++|.++ .+| +|++++++++++++.....
T Consensus 184 ~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~RiG~l~~~~~~~~~l~~~~~---------- 252 (367)
T PRK02731 184 PPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYG-LAGLRVGYGIAPPEIIDALNRVRQ---------- 252 (367)
T ss_pred CCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhc-CcccceeeeeCCHHHHHHHHHccC----------
Confidence 359999999998643311 1111 1134688889999874 444 6999999999887764311
Q ss_pred HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCC
Q 017726 238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH 316 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 316 (367)
++..+.. ++.++.+.+.... +++.++.++++.+.+.+.|++.|+.+.++ .+.++++++++.
T Consensus 253 ----------~~~~~~~---~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-----~g~~~~i~~~~~ 314 (367)
T PRK02731 253 ----------PFNVNSL---ALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAELGLEYIPS-----VGNFILVDFDDG 314 (367)
T ss_pred ----------CCCCCHH---HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCCccCCC-----CceEEEEECCCC
Confidence 1123332 3333444443222 67778888999999999999988776543 346788888666
Q ss_pred CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 317 INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 317 ~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
.+..++++.|.+ +||.++++.....++++||++. ..++.+.+.++|++
T Consensus 315 ~~~~~~~~~L~~-~gI~v~~~~~~~~~~~iRis~~-~~~e~~~l~~aL~~ 362 (367)
T PRK02731 315 KDAAEAYQALLK-RGVIVRPVAGYGLPNALRITIG-TEEENRRFLAALKE 362 (367)
T ss_pred CCHHHHHHHHHH-CCEEEEeCCCCCCCCeEEEecC-CHHHHHHHHHHHHH
Confidence 788999999975 5999998754433468999964 55666766666653
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=237.52 Aligned_cols=308 Identities=15% Similarity=0.124 Sum_probs=227.0
Q ss_pred CCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcch
Q 017726 17 PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFS 96 (367)
Q Consensus 17 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~ 96 (367)
|.+.++.+.+++.+...... +.......++|+.++++++++++ ++++|+|+++++..++.+++++||.|++++|.|+.
T Consensus 40 ~~~~~~~v~~a~~~~~~~~~-~~p~~g~~~lr~~ia~~~~~~~~-~i~~t~G~~~~l~~~~~~~~~~gd~v~~~~p~y~~ 117 (359)
T PRK03158 40 PYGPSPKVKEAIAAHLDELA-LYPDGYAPELRTKVAKHLGVDEE-QLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFSQ 117 (359)
T ss_pred CCCCCHHHHHHHHHHHHHhh-cCCCCcHHHHHHHHHHHhCCCHH-HEEECCCHHHHHHHHHHHHhCCCCEEEEcCCCHHH
Confidence 34467778888876433211 11224567899999999998754 59999999999999998888999999999998766
Q ss_pred HHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEee
Q 017726 97 LLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDG 176 (367)
Q Consensus 97 ~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~ 176 (367)
.. ..+...|.++..++.+ ++.+|+++++++++ ++++++++++|+||||.++|.+++.++++..++|+++|+|+
T Consensus 118 ~~--~~~~~~g~~~~~~~~~-~~~~d~~~l~~~~~----~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De 190 (359)
T PRK03158 118 YR--HNAIIEGAEVREVPLK-DGGHDLEAMLKAID----EQTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDE 190 (359)
T ss_pred HH--HHHHHcCCeEEEEecC-CCCcCHHHHHHhcC----CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEEC
Confidence 43 4567789999999987 67789999998886 46799999999999999999999999998754699999999
Q ss_pred eeccCcee----e--c-cccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCcc
Q 017726 177 VSSICAID----F--R-MDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFW 247 (367)
Q Consensus 177 ~~~~~~~~----~--~-~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (367)
+|...... . . ....+..+++.|++|.++ .+| +|++++++++++++.....
T Consensus 191 ~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~~v~~~~~~~~~~~~~~-------------------- 249 (359)
T PRK03158 191 AYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYG-LAALRVGYGIASEELIEKLNIARP-------------------- 249 (359)
T ss_pred chHhhcCCcccccHHHHHHhcCCEEEEEechHhhc-CcchhhehhcCCHHHHHHHHHhcC--------------------
Confidence 98643321 0 1 112246788899999984 445 5999999999888764311
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHH
Q 017726 248 PYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRA 326 (367)
Q Consensus 248 ~~~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 326 (367)
.+..+.....++..+++ +.. +++.++..+++++.+.+.|++.|+.+.++ .+.+++++++ .+..++++.|
T Consensus 250 ~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~g~~i~~~~~--~~~~~~~~~l 319 (359)
T PRK03158 250 PFNTTRIAQYAAIAALE---DQAFLKECVEKNAEGLEQYYAFCKEYGLFYYPS-----QTNFIFVDTG--RDANELFEAL 319 (359)
T ss_pred CCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCCCeeCCC-----cCcEEEEECC--CCHHHHHHHH
Confidence 12344433334443443 222 56667777888888999998888776543 2346777763 4678999999
Q ss_pred HhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 327 WQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 327 ~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
.+ +||.+.+|..+..++++||++ +..++.+.+.++|++
T Consensus 320 ~~-~gv~v~~g~~f~~~~~iRi~~-~~~~~~~~l~~al~~ 357 (359)
T PRK03158 320 LK-KGYIVRSGAALGFPTGVRITI-GLKEQNDKIIELLKE 357 (359)
T ss_pred HH-CCeEEeeCCCCCCCCeEEEec-CCHHHHHHHHHHHHH
Confidence 75 599999986544457899994 566777777777765
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-31 Score=238.17 Aligned_cols=304 Identities=14% Similarity=0.092 Sum_probs=221.8
Q ss_pred CCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcc
Q 017726 16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF 95 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~ 95 (367)
.|.++|+.+++++.+.......| +.....++|+.++++++++++ +|++++|+++++..++.+++++||.|+++.|.|+
T Consensus 39 n~~~~~~~v~~a~~~~~~~~~~Y-p~~g~~~Lr~aia~~~~~~~~-~I~vt~Gs~e~i~~~~~~l~~~gd~vlv~~P~y~ 116 (366)
T PRK01533 39 NPFGCSPRVLDELQKSWLDHALY-PDGGATTLRQTIANKLHVKME-QVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFP 116 (366)
T ss_pred CCCCCCHHHHHHHHHHHHhcCcC-CCCCHHHHHHHHHHHhCCCcc-eEEECCCHHHHHHHHHHHhcCCCCEEEEcCCcHH
Confidence 46678888999887653322222 123457899999999998764 5999999999999999999999999999999766
Q ss_pred hHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEe
Q 017726 96 SLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD 175 (367)
Q Consensus 96 ~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D 175 (367)
.+. ..++..|.+++.++.+ ++.+|+++++++++ ++++++++|+||||||.+++.+++.++++....+.++|+|
T Consensus 117 ~~~--~~~~~~g~~v~~v~~~-~~~~d~~~l~~~~~----~~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~~~iiD 189 (366)
T PRK01533 117 QYR--HHAIIEGCEVKEVALN-NGVYDLDEISSVVD----NDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENTLIVID 189 (366)
T ss_pred HHH--HHHHHcCCEEEEeecC-CCCcCHHHHHHHhC----cCCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCCEEEEE
Confidence 543 5578889999999986 45689999999987 4679999999999999999988777776652233467789
Q ss_pred eeeccCcee------ec-cccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCc
Q 017726 176 GVSSICAID------FR-MDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTF 246 (367)
Q Consensus 176 ~~~~~~~~~------~~-~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (367)
++|...... .. ....+..+++.|+||.++ .+| +|++++++++++++.....
T Consensus 190 e~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~-l~GlRiG~~i~~~~~~~~l~~~~~------------------- 249 (366)
T PRK01533 190 EAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYG-LASFRVGYAVGHEELIEKLNVVRL------------------- 249 (366)
T ss_pred ccHHHhhccccCcchhHHhccCCCEEEEeCchHHhc-ChHHHHhHHhCCHHHHHHHHHhcC-------------------
Confidence 998532211 11 112245689999999984 444 6999999999888864321
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHH
Q 017726 247 WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRA 326 (367)
Q Consensus 247 ~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 326 (367)
++..+.....++.++++. .+ -.++.++...++++++.+.|+.+|+++..+ .+ .+++++++ +..++.+.|
T Consensus 250 -~~~~~~~~q~aa~~~l~~-~~-~~~~~~~~~~~~r~~~~~~l~~~g~~~~~~----~~-nf~~~~~~---~~~~~~~~l 318 (366)
T PRK01533 250 -PFNVSSLAQKAATIAFGD-DE-FIEEIVRVNTEGLRQYESFCKENEIPFYQS----QT-NFIFLPVE---NGGEIYEAC 318 (366)
T ss_pred -CCCcCHHHHHHHHHHhCC-HH-HHHHHHHHHHHHHHHHHHHHHhCCCccCCC----cC-cEEEEeCC---CHHHHHHHH
Confidence 234555444444444432 11 155667777888888999998888877665 34 46778774 467899998
Q ss_pred HhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 327 WQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 327 ~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
.+ +||.|++ + ++++||+ .+..++.+.+..+|++
T Consensus 319 ~~-~GI~Vr~-~----~~~iRis-~~~~~~~~~l~~al~~ 351 (366)
T PRK01533 319 AH-AGFIIRP-F----PNGVRIT-VGTREQNEGVISVLQQ 351 (366)
T ss_pred HH-CCcEEcc-C----CCceEEe-CCCHHHHHHHHHHHHH
Confidence 75 5999997 2 4679999 5666777777777654
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-30 Score=236.24 Aligned_cols=317 Identities=15% Similarity=0.092 Sum_probs=223.5
Q ss_pred CcccccCC--CCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCe
Q 017726 9 KNHLFVPG--PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR 86 (367)
Q Consensus 9 ~~~~~~~~--p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~ 86 (367)
+.+.+.-| |..+++.+.+++.+.......|..... .++|+.++++++++++ +|++|+|+++++..++.+++.+||.
T Consensus 37 ~~i~l~~~~~~~~~~~~~~~al~~~~~~~~~Y~~~~g-~~lr~~ia~~~~~~~~-~i~~t~G~~~~l~~~~~~~~~~gd~ 114 (371)
T PRK05166 37 RIAKLGSNENPLGPSPAVRRAFADIAELLRLYPDPQG-RALREAIAARTGVPAD-RIILGNGSEDLIAVICRAVLRPGDR 114 (371)
T ss_pred ceEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcH-HHHHHHHHHHhCcCHH-HEEEcCCHHHHHHHHHHHhcCCCCE
Confidence 33445443 345677888888763222222322233 3899999999998754 5999999999999999988999999
Q ss_pred EEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhc
Q 017726 87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY 166 (367)
Q Consensus 87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~ 166 (367)
|++..|.|.... ..++..|++++.++.+.++.+|+++++++++ +++|++++++|+||||.++|.+++.++++..
T Consensus 115 vli~~P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~----~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~ 188 (371)
T PRK05166 115 VVTLYPSFPLHE--DYPTMMGARVERVTVTPDLGFDLDALCAAVA----RAPRMLMFSNPSNPVGSWLTADQLARVLDAT 188 (371)
T ss_pred EEEcCCChHHHH--HHHHHcCCeEEEeecCCCCCCCHHHHHHhhh----cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC
Confidence 999999776543 5567889999999998778899999999987 4669999999999999999998888888764
Q ss_pred CCCcEEEEeeeeccCcee------ecc-cc-ccceEEEecCCCccc-CCCcceeeee-CHHHHHHhccCCCCceeechHH
Q 017726 167 RHPALFLVDGVSSICAID------FRM-DE-WGIDVALTGSQKALS-LPTGMGIVCA-SPKALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~~------~~~-~~-~~~d~~~~s~~K~~~-g~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 236 (367)
.++++|++|++|...... ... .. ....+++.|++|.++ ...++|++++ ++++++.+.....
T Consensus 189 ~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~~--------- 259 (371)
T PRK05166 189 PPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVRT--------- 259 (371)
T ss_pred CCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHHHHHHHhcc---------
Confidence 458899999998643311 111 11 123588999999985 2334699775 6777766653210
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS 315 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 315 (367)
.+..+... ..+++..+...+ +++.++.+.++++.+.+.|++.|+.+.++ .+.++|++.+
T Consensus 260 -----------~~~~~~~~---q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~p~-----~g~fl~~~~~- 319 (371)
T PRK05166 260 -----------PFNVNGAA---QAAALAALDDEEHLAKGVALALAERERLKKELAEMGYRIAPS-----RANFLFFDAR- 319 (371)
T ss_pred -----------CCCCCHHH---HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcCeeCCC-----cCCEEEEeCC-
Confidence 12234322 233333333222 66777888889999999999988765443 3446777763
Q ss_pred CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 316 HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 316 ~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
.+..++.+.|.++ ||.+.+|..+...+++||++. ..++.+.+.+.|+
T Consensus 320 -~~~~~l~~~l~~~-gi~v~p~~~~~~~~~iRi~~~-~~~~~~~l~~~l~ 366 (371)
T PRK05166 320 -RPASAVAEALLRQ-GVIVKPWKQPGFETFIRVSIG-SPEENDHFVAALD 366 (371)
T ss_pred -CCHHHHHHHHHHC-CeEEecCCCCCCCCeEEEEcC-CHHHHHHHHHHHH
Confidence 3578899999765 999999865545678999964 4444555555554
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.1e-30 Score=236.47 Aligned_cols=303 Identities=12% Similarity=0.043 Sum_probs=213.2
Q ss_pred CCChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHh----cC--CCCceEEecCChhHHHHHHHHccCCCCCeEEE
Q 017726 18 VHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIF----KT--TSGTPFLIPTTGTGAWESALTNTLSPGDRIIS 89 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~----~~--~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~ 89 (367)
.++++.+.+++.+.... ...|.......++|+.+++++ |. +++++|++|+|+++++..++.+++.+||.|++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~~~gd~Vlv 121 (388)
T PRK07366 42 LPAPAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALL 121 (388)
T ss_pred CCCCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhCCCCCEEEE
Confidence 35567778887764321 223433345668888888887 43 34325999999999999999999999999999
Q ss_pred EeCCcchHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHH---HHHHHHH
Q 017726 90 FLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLS---KVRKLLD 164 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~---~i~~~~~ 164 (367)
..|.|+.+. ..++..|.+++.++++.+ +.+|++++++.+. +++|++++++||||||.+++.+ +|.++|+
T Consensus 122 ~~P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~----~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~ 195 (388)
T PRK07366 122 LDPGYPSHA--GGVYLAGGQIYPMPLRAENDFLPVFADIPTEVL----AQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQ 195 (388)
T ss_pred cCCCCcchH--HHHHhcCCEEEEEECCCccCCCCCHHHHHHhhc----ccceEEEEeCCCCCCCccCCHHHHHHHHHHHH
Confidence 999877653 557788999999998753 4578888888776 4679999999999999999754 5667888
Q ss_pred hcCCCcEEEEeeeeccCcee-----e---ccccc-cceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeech
Q 017726 165 EYRHPALFLVDGVSSICAID-----F---RMDEW-GIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDW 234 (367)
Q Consensus 165 ~~~~~~~vi~D~~~~~~~~~-----~---~~~~~-~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 234 (367)
+ ++++||+|++|...... . ..... ...+++.|+||.++ ...++|++++++++++++......
T Consensus 196 ~--~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~li~~l~~~~~~------ 267 (388)
T PRK07366 196 Q--HDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGNAQLIQALRQVKAV------ 267 (388)
T ss_pred H--cCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhheehcCCHHHHHHHHHHHhh------
Confidence 8 99999999998644211 0 11111 23478899999984 223369999999998887643210
Q ss_pred HHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEE
Q 017726 235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF--EEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVI 312 (367)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~--~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~ 312 (367)
. + .++.+.. +++++..+. +.-+++.++.++++++.+.+.|++.|+.+..+ .+++++|++
T Consensus 268 ------~--~---~~~~~~~----~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~p----~~g~f~~~~ 328 (388)
T PRK07366 268 ------V--D---FNQYRGI----LNGAIAALTGPQATVQQTVQIFRQRRDAFINALHQIGWPVPLP----EATMYVWAK 328 (388)
T ss_pred ------c--c---cCCCHHH----HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC----CeeEEEEEE
Confidence 0 0 1112211 122222222 12277888899999999999999888765555 467788899
Q ss_pred cCCCC--CHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecCC
Q 017726 313 VPSHI--NSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLGH 353 (367)
Q Consensus 313 ~~~~~--~~~~l~~~L~~~~gv~v~~g~~~~--~~~~iRi~~~~~ 353 (367)
+++.. +..++++.|.+++||.+.+|..+. ..+++||++...
T Consensus 329 ~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~ 373 (388)
T PRK07366 329 LPEPWQGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVHD 373 (388)
T ss_pred CCcccCCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecCC
Confidence 86542 467888888777799999985432 246899997543
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-30 Score=237.36 Aligned_cols=302 Identities=17% Similarity=0.127 Sum_probs=214.5
Q ss_pred ChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cC--CCCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 20 IPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KT--TSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~--~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
.|+.+++++.+.... ...|.......++|+.+++++ |. +++++|++|+|+++++..++.+++++||.|+++.|
T Consensus 40 ~p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p 119 (387)
T PRK08912 40 GPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQP 119 (387)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCC
Confidence 356677776653321 223433344567777777765 44 23326999999999999999998999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCC
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRH 168 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~ 168 (367)
.|... ...++..|++++.++.+. ++.+|++++++.+. +++|++++++|+||||.+++ +++|.++|++ +
T Consensus 120 ~y~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~--~ 191 (387)
T PRK08912 120 LYDAY--LPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFS----PRTKAVLLNNPLNPAGKVFPREELALLAEFCQR--H 191 (387)
T ss_pred Cchhh--HHHHHHcCCEEEEEecCcccCcCCHHHHHHHhC----ccceEEEEeCCCCCcCcccCHHHHHHHHHHHHH--C
Confidence 77654 356788899999999864 56889999999887 46799999999999999997 5568888888 9
Q ss_pred CcEEEEeeeeccCcee------e-cccc-ccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHH
Q 017726 169 PALFLVDGVSSICAID------F-RMDE-WGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYI 238 (367)
Q Consensus 169 ~~~vi~D~~~~~~~~~------~-~~~~-~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (367)
++++|+|++|...... + .... .+.++++.|+||.++ .+| +|++++++++++.+......
T Consensus 192 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~GlRiG~~~~~~~~~~~l~~~~~~---------- 260 (387)
T PRK08912 192 DAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFS-LTGWKVGFVCAAPPLLRVLAKAHQF---------- 260 (387)
T ss_pred CeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhcc-CcCceeEEEecCHHHHHHHHHHHhh----------
Confidence 9999999998532211 0 1111 246799999999984 555 79999999998877542110
Q ss_pred HHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC---
Q 017726 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS--- 315 (367)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~--- 315 (367)
. .++.+.....++..++....+. +++.++++.++++.+.+.|++.|+.+..+ .+++++|+++++
T Consensus 261 -----~---~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~g~~~l~~~l~~~~~ 327 (387)
T PRK08912 261 -----L---TFTTPPNLQAAVAYGLGKPDDY-FEGMRADLARSRDRLAAGLRRIGFPVLPS----QGTYFLTVDLAPLGL 327 (387)
T ss_pred -----c---cccCChHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHHHHHhCCCcccCC----CcceEEEecccccCC
Confidence 0 1122222223333333211111 56778889999999999999988877765 466678888864
Q ss_pred CCCHHHHHHHHHhhCCeEEccCCCC----CCCcEEEEeecCC
Q 017726 316 HINSSEIVRRAWQRYNLSLGLGLNK----VAGKVFRIGHLGH 353 (367)
Q Consensus 316 ~~~~~~l~~~L~~~~gv~v~~g~~~----~~~~~iRi~~~~~ 353 (367)
..+..++++.|.+++||.+.+|..+ ...+++||++...
T Consensus 328 ~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~~ 369 (387)
T PRK08912 328 AEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAKR 369 (387)
T ss_pred CCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeCC
Confidence 2467789999877779999998532 1246899997653
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.7e-30 Score=234.49 Aligned_cols=310 Identities=14% Similarity=0.077 Sum_probs=220.0
Q ss_pred CChHHHHHHHccCCC--CCCCCcHHHHHHHHHHHHHHHh----cC---CCCceEEecCChhHHHHHHHHccCCCCCeEEE
Q 017726 19 HIPDQVIRAMNRNNE--DYRSPAVPALTKTLLEDIKKIF----KT---TSGTPFLIPTTGTGAWESALTNTLSPGDRIIS 89 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~--~~~~~~~~~~~~~~~~~la~~~----~~---~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~ 89 (367)
++++.+.+++.+... ...+|.. ....++|+.+++++ |. +++++|++|+|+++++..++.+++++||.|++
T Consensus 57 ~~~~~~~~~l~~~~~~~~~~~Y~~-~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~~~~~gd~Vlv 135 (410)
T PRK06290 57 MADESVVEVLCEEAKKPENRGYAD-NGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFINPGDVTLM 135 (410)
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCC-CCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHHhCCCCCEEEE
Confidence 356667777665321 1222322 45678888888886 43 33336999999999999999999999999999
Q ss_pred EeCCcchHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHH
Q 017726 90 FLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLD 164 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~ 164 (367)
+.|.|+.+. ..++..|.++..++++.+ +.+|++++++++. +++|+|++++|+||||.+++ +++|.++|+
T Consensus 136 ~~P~y~~~~--~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~----~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~ 209 (410)
T PRK06290 136 TVPGYPVTG--THTKYYGGEVYNLPLLEENNFLPDLDSIPKDIK----EKAKLLYLNYPNNPTGAVATKEFYEEVVDFAK 209 (410)
T ss_pred eCCCCccHH--HHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhc----ccceEEEEECCCCCCCcCCCHHHHHHHHHHHH
Confidence 999877643 557788999999998753 4669999998886 46799999999999999998 466777888
Q ss_pred hcCCCcEEEEeeeeccCcee---ec---cc-cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechH
Q 017726 165 EYRHPALFLVDGVSSICAID---FR---MD-EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 165 ~~~~~~~vi~D~~~~~~~~~---~~---~~-~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (367)
+ +|++||+|++|...... .+ .. ..+.++++.|+||.++ .+| +|++++++++++.+......
T Consensus 210 ~--~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g-~~GlRiG~ii~~~~l~~~l~~~~~~------- 279 (410)
T PRK06290 210 E--NNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYN-MTGWRLAFVVGNELIVKAFATVKDN------- 279 (410)
T ss_pred H--cCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcC-CchhheEeEEeCHHHHHHHHHHHhc-------
Confidence 8 99999999998754321 11 11 1245799999999994 445 69999999988777643110
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcC
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 314 (367)
. ....+... ..++...+.+.. +++.++++.++++.+.+.|++.|+.+..+ .+++++|+++|
T Consensus 280 --------~---~~~~~~~~---q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p----~g~f~l~v~lp 341 (410)
T PRK06290 280 --------N---DSGQFIAI---QKAGIYALDHPEITEKIREKYSRRLDKLVKILNEVGFKAEMP----GGTFYLYVKAP 341 (410)
T ss_pred --------c---ccCCcHHH---HHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhCCCeecCC----CeeeEEEEECC
Confidence 0 11122222 223333333222 56778888999999999999988877665 46667788886
Q ss_pred CCC-------CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC---CCCHHHHHHhhhh
Q 017726 315 SHI-------NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG---HLNEVMFNFQLLF 365 (367)
Q Consensus 315 ~~~-------~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~---~~~~~~~~~~~l~ 365 (367)
++. +..+++++|.++.++.+.||... ++++||++.. ..++.+.+.++|.
T Consensus 342 ~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~--~~~lRi~~~~~~~~~~~~~~~~~~l~ 400 (410)
T PRK06290 342 KGTKSGIKFENAEEFSQYLIKEKLISTVPWDDA--GHFLRFSVTFEAKDEEEEDRILEEIK 400 (410)
T ss_pred CccccCCCCCCHHHHHHHHHHhCCEEEECCccc--cCeEEEEEEcccccccchhHHHHHHH
Confidence 543 67899999998867777776542 4689999753 4445555555444
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4e-30 Score=237.07 Aligned_cols=301 Identities=15% Similarity=0.056 Sum_probs=210.3
Q ss_pred CChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHh----cCC---CCceEEecCChhHHHHHHHHccCCC---CCeEE
Q 017726 19 HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIF----KTT---SGTPFLIPTTGTGAWESALTNTLSP---GDRII 88 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~---~~~~v~~~~ggt~al~~~~~~~~~~---gd~vl 88 (367)
++++.+.+++.+.......|.......++|+.+++++ |.+ ++++|++|+|+++++..++.+++++ ||.|+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~~~~gd~vl 121 (396)
T PRK09147 42 PTPAFIKDALAANLDGLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVV 121 (396)
T ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHcCCCCCCCEEE
Confidence 4577788887764333333332334456777777765 643 3336999999999999999999999 89999
Q ss_pred EEeCCcchHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHH
Q 017726 89 SFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLL 163 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~ 163 (367)
++.|.|..+. ..++..|.+++.+|++.+ +.+|++++++.+. +++|++++++||||||.+++ +++|.++|
T Consensus 122 v~~P~y~~~~--~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~----~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a 195 (396)
T PRK09147 122 CPNPFYQIYE--GAALLAGAEPYFLNCDPANNFAPDFDAVPAEVW----ARTQLLFVCSPGNPTGAVLPLDDWKKLFALS 195 (396)
T ss_pred EcCCCccchH--HHHHhcCCEEEEeccCccccCccCHHHHHHHHh----hccEEEEEcCCCCCcCccCCHHHHHHHHHHH
Confidence 9999776543 557788999999998643 5789999988876 36799999999999999996 55677778
Q ss_pred HhcCCCcEEEEeeeeccCceee-----c-c--------ccccceEEEecCCCcccC-CCcceeeeeCHHHHHHhccCCCC
Q 017726 164 DEYRHPALFLVDGVSSICAIDF-----R-M--------DEWGIDVALTGSQKALSL-PTGMGIVCASPKALEASKTAKSV 228 (367)
Q Consensus 164 ~~~~~~~~vi~D~~~~~~~~~~-----~-~--------~~~~~d~~~~s~~K~~~g-~~g~g~~~~~~~~~~~~~~~~~~ 228 (367)
++ ++++||+|++|......- . . ...+..+++.|+||.++. ..++|++++++++++++.....
T Consensus 196 ~~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~~l~~~~~~~~~- 272 (396)
T PRK09147 196 DR--YGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDAALLKKFLLYRT- 272 (396)
T ss_pred HH--cCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCccceeeeecCCHHHHHHHHHHhh-
Confidence 88 999999999987543210 0 0 011345999999997631 2337999999999887764211
Q ss_pred ceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCce
Q 017726 229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV 308 (367)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 308 (367)
+..+.++.....+..+++. .+.-+++.++.++++++.+.+.|++. +.+..+ .++.+
T Consensus 273 -----------------~~~~~~~~~~q~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~p----~~g~f 328 (396)
T PRK09147 273 -----------------YHGCAMPPAVQAASIAAWN--DEAHVRENRALYREKFDAVTPILAPV-LDVQLP----DAGFY 328 (396)
T ss_pred -----------------hcccCCCHHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHHHHHHh-cCCCCC----CeeEE
Confidence 0011233332233222321 11226677888888999999988875 444444 46778
Q ss_pred EEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC--------CCcEEEEeecCCC
Q 017726 309 TAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV--------AGKVFRIGHLGHL 354 (367)
Q Consensus 309 ~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~--------~~~~iRi~~~~~~ 354 (367)
+|++++ .+..++++.|.+++||.+.+|..+. ..+++||++....
T Consensus 329 ~~~~~~--~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~~~ 380 (396)
T PRK09147 329 LWAKVP--GDDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVAPL 380 (396)
T ss_pred EEEECC--CCHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecCCH
Confidence 889986 4678899998777799999984321 2467999976543
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.1e-30 Score=230.78 Aligned_cols=307 Identities=12% Similarity=0.081 Sum_probs=222.8
Q ss_pred CCCChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCc
Q 017726 17 PVHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQ 94 (367)
Q Consensus 17 p~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~ 94 (367)
+.++|+.+++++.+.... ...|.. ....++|+.++++++++++ +|++++|+++++..++.+++.+||+|++++|.|
T Consensus 33 ~~~~p~~~~~a~~~~~~~~~~~~y~~-~~~~~lr~~ia~~~~~~~~-~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~p~y 110 (351)
T PRK14807 33 PFELPEEVIKNIQEIVKSSQVNIYPD-PTAEKLREELARYCSVVPT-NIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSF 110 (351)
T ss_pred CCCCCHHHHHHHHHHhhcCcccCCCC-ccHHHHHHHHHHHhCCCcc-cEEEecCHHHHHHHHHHHhcCCCCEEEEeCCCh
Confidence 557788999998774321 112221 2357899999999998764 599999999999999998899999999999976
Q ss_pred chHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEE
Q 017726 95 FSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLV 174 (367)
Q Consensus 95 ~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~ 174 (367)
.. +...++..|++++.++.+.++.+|++++++++++ .++|+|++++|+||||.+++.+++.+++++ ++.++|+
T Consensus 111 ~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~---~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~--~~~~~iv 183 (351)
T PRK14807 111 AM--YSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEK---YQPKLVFLCNPNNPTGSVIEREDIIKIIEK--SRGIVVV 183 (351)
T ss_pred HH--HHHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhc---cCCCEEEEeCCCCCCCCCCCHHHHHHHHHh--CCCEEEE
Confidence 64 3356788999999999887778999999999874 367999999999999999999999999998 7788999
Q ss_pred eeeeccCcee--ec-cccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCC
Q 017726 175 DGVSSICAID--FR-MDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPY 249 (367)
Q Consensus 175 D~~~~~~~~~--~~-~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (367)
|++|....-. .+ .......+++.|+||.++ .+| +|+++.++++++.+..... ++
T Consensus 184 De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~~-~~GlRiG~~v~~~~~~~~~~~~~~--------------------~~ 242 (351)
T PRK14807 184 DEAYFEFYGNTIVDVINEFENLIVLRTLSKAFG-LAGLRVGYAVANENILKYLNLVKS--------------------PY 242 (351)
T ss_pred eCcchhhcccchHHHhhhCCCEEEEecchHhcc-cchhceeeeecCHHHHHHHHHccC--------------------CC
Confidence 9998532210 11 112245699999999994 444 6999999999887764311 11
Q ss_pred CCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHh
Q 017726 250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQ 328 (367)
Q Consensus 250 ~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 328 (367)
..+.....++ ...+.+..+++.++.+.++++.+.+.|++. |+.+.++ .+.+++++++ +..++++.|.+
T Consensus 243 ~~~~~~q~~~---~~~l~~~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~~~-----~~~~~~i~~~---~~~~~~~~l~~ 311 (351)
T PRK14807 243 NINSLSQVIA---LKVLRTGVLKERVNYILNERERLIKELSKIPGIKVYPS-----KTNFILVKFK---DADYVYQGLLE 311 (351)
T ss_pred CcCHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcEECcC-----CccEEEEEcC---CHHHHHHHHHH
Confidence 2333322333 333333235666777888899999999886 8766543 3446777774 46788888875
Q ss_pred hCCeEEccCCC-CCCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 329 RYNLSLGLGLN-KVAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 329 ~~gv~v~~g~~-~~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
+||.+.++.. ....+++||++ +..++.+.+.+.|++
T Consensus 312 -~gV~v~~~~~~~~~~~~iRis~-~~~~~~~~l~~~l~~ 348 (351)
T PRK14807 312 -RGILVRDFSKVEGLEGALRITV-SSCEANDYLINGLKE 348 (351)
T ss_pred -CCEEEEECCCCCCCCCeEEEEc-CCHHHHHHHHHHHHH
Confidence 4999987532 22346899995 455556666666654
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-29 Score=231.76 Aligned_cols=316 Identities=16% Similarity=0.108 Sum_probs=230.4
Q ss_pred ccCCCCCChHHHHHHHccCCCC----CC-CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC----CC
Q 017726 13 FVPGPVHIPDQVIRAMNRNNED----YR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL----SP 83 (367)
Q Consensus 13 ~~~~p~~~~~~v~~a~~~~~~~----~~-~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~----~~ 83 (367)
+.-.-++..+.+.+++.++... .. .+......+++++.+++++|.+++. +++++||++++..++.++. .+
T Consensus 25 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~-~~~~~ggt~a~~~a~~~~~~~~~~~ 103 (371)
T PRK13520 25 LSSMCTEPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDAY-GYITSGGTEANIQAVRAARNLAKAE 103 (371)
T ss_pred eeeeecCchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCC-eEEecCcHHHHHHHHHHHHhhccCC
Confidence 3333455666667777554322 11 2345566689999999999987654 7889999999998876543 25
Q ss_pred CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHH
Q 017726 84 GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLL 163 (367)
Q Consensus 84 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~ 163 (367)
+++|++.+++|++ +...++..|++++.++.+.++.+|++++++++++ ++++|++++++|+||.+.|+++|.++|
T Consensus 104 ~~~vl~~~~~h~s--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----~~~~vi~~~~~~~tG~~~~l~~I~~l~ 177 (371)
T PRK13520 104 KPNIVVPESAHFS--FDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDD----NTIGIVGIAGTTELGQVDPIPELSKIA 177 (371)
T ss_pred CceEEecCcchHH--HHHHHHHcCceEEEecCCCCCcCCHHHHHHHHhh----CCEEEEEEcCCcCCcccCCHHHHHHHH
Confidence 7899999998877 4466788899999999988888999999999984 567888888999999999999999999
Q ss_pred HhcCCCcEEEEeeeeccCcee-------eccccccceEEEecCCCcccCCCcceeeee-CHHHHHHhccCCCCceeechH
Q 017726 164 DEYRHPALFLVDGVSSICAID-------FRMDEWGIDVALTGSQKALSLPTGMGIVCA-SPKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 164 ~~~~~~~~vi~D~~~~~~~~~-------~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~ 235 (367)
++ +|+++++|++|+.+..+ ++....++|++.+|+|||..++.++|+++. ++++++.+... . .+...
T Consensus 178 ~~--~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~~-~-~~~~~-- 251 (371)
T PRK13520 178 LE--NGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVD-T-PYLTS-- 251 (371)
T ss_pred HH--cCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCccCCceEEEEcCHHHHHhhccc-C-ccccC--
Confidence 99 99999999999865432 233345789999999998765666776665 55566655311 1 11000
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCc-cccCCCccCCCceEEEEcC
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLK-NCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~-~~~~~~~~~~~~~~~~~~~ 314 (367)
..++. ..+|++...++++.++++.+.++|+++++++..++++++.+.|+++|++ +..+ ...++.+.++
T Consensus 252 --~~~~~----~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-----~~~~v~~~~~ 320 (371)
T PRK13520 252 --KKQAT----LTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKERGFEPVIEP-----VLNIVAFDDP 320 (371)
T ss_pred --CCCcc----eEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhCCCEEecCC-----CceEEEEecC
Confidence 00000 1224555567888889998888888899999999999999999998887 4433 2346777764
Q ss_pred CCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 315 SHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 315 ~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
+..++.++|.++ ||.+..+. .+.++|++++...+++|+
T Consensus 321 ---~~~~v~~~L~~~-gi~v~~~~---~~~~iRis~~~~~t~edi 358 (371)
T PRK13520 321 ---NPDEVREKLRER-GWRVSVTR---CPEALRIVCMPHVTREHI 358 (371)
T ss_pred ---CHHHHHHHHHHC-CceeccCC---CCCEEEEEEECCCCHHHH
Confidence 577899999765 99887643 246799998766554443
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-30 Score=240.78 Aligned_cols=309 Identities=15% Similarity=0.056 Sum_probs=217.5
Q ss_pred HHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcC--CCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHH
Q 017726 22 DQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKT--TSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLW 99 (367)
Q Consensus 22 ~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~ 99 (367)
+.+.+++.+.......|.......++|+.++++++. ..+++|++|+|+++++..++.++++|||.|++.+|.|+.+
T Consensus 101 p~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~~-- 178 (431)
T PRK15481 101 PDLSRYFARLSRTPRLYGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSS-- 178 (431)
T ss_pred HHHHHHHHHhhhhhhhcCCcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhCCCCCEEEEeCCCcHHH--
Confidence 346666665433222333334456899999999873 3445699999999999999999999999999999987664
Q ss_pred HHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEE-ecCCCccccccHH---HHHHHHHhcCC-CcEEEE
Q 017726 100 IDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIV-HNETATGVTNNLS---KVRKLLDEYRH-PALFLV 174 (367)
Q Consensus 100 ~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~-~~~n~tG~~~~~~---~i~~~~~~~~~-~~~vi~ 174 (367)
...++..|++++.++.+++ .+|+++++++++ +++|+++++ +||||||.+++.+ +|.++|++ + +++||+
T Consensus 179 ~~~~~~~g~~~~~v~~~~~-g~~~~~l~~~~~----~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~--~~~~~ii~ 251 (431)
T PRK15481 179 INMLRYAGFSASPVSVDAE-GMQPEKLERALA----QGARAVILTPRAHNPTGCSLSARRAAALRNLLAR--YPQVLVII 251 (431)
T ss_pred HHHHHHcCCeEEeeccCCC-CCCHHHHHHHHh----cCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHh--cCCceEEe
Confidence 3567889999999998755 489999999987 357888887 9999999999875 88899988 7 999999
Q ss_pred eeeeccCcee--ec-cc-cccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCC
Q 017726 175 DGVSSICAID--FR-MD-EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT 250 (367)
Q Consensus 175 D~~~~~~~~~--~~-~~-~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (367)
|++|...... .+ .. .....+++.|+||.++...++|+++.++++++++..... .. .+.
T Consensus 252 De~Y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~GlRiG~~i~~~~~~~~~~~~~~---------------~~---~~~ 313 (431)
T PRK15481 252 DDHFALLSSSPYHSVIPQTTQRWALIRSVSKALGPDLRLAFVASDSATSARLRLRLN---------------SG---TQW 313 (431)
T ss_pred cCchhhhccCCCCCCCcCCCCCEEEEeeeccccCCCceeEEEeCCHHHHHHHHHHHh---------------cc---ccC
Confidence 9998744211 01 11 123568999999999633446999999998887753211 01 112
Q ss_pred CcHHHHHHHHHHHHHHH-HhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhh
Q 017726 251 PSIQLLYGLRAALDLIF-EEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQR 329 (367)
Q Consensus 251 ~~~~~~~al~~al~~~~-~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 329 (367)
.+.....++..++..-. ..-+++.++.+.++++.+.+.|++.|+.+..| .+++++|+++++ +..++++.|.+
T Consensus 314 ~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~~~~~~~p----~gg~f~~~~l~~--~~~~~~~~l~~- 386 (431)
T PRK15481 314 VSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQYGIAIPSP----GDGLNLWLPLDT--DSQATALTLAK- 386 (431)
T ss_pred CCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC----CCeEEEEEECCC--CHHHHHHHHHH-
Confidence 34433333343443211 01156778889999999999999988776555 467788888853 46789998864
Q ss_pred CCeEEccCCCCC---CCcEEEEeecCC-CCHHHHHHhhh
Q 017726 330 YNLSLGLGLNKV---AGKVFRIGHLGH-LNEVMFNFQLL 364 (367)
Q Consensus 330 ~gv~v~~g~~~~---~~~~iRi~~~~~-~~~~~~~~~~l 364 (367)
+||.+.+|..+. .++++||++... .++.+...+.|
T Consensus 387 ~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l 425 (431)
T PRK15481 387 SGWLVREGEAFGVSAPSHGLRITLSTLNDAEINRLAADL 425 (431)
T ss_pred CCcEEecCCccccCCCCCeEEEEcCCCChHHHHHHHHHH
Confidence 599999985432 235799996542 23334444444
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-29 Score=231.78 Aligned_cols=322 Identities=12% Similarity=0.121 Sum_probs=224.2
Q ss_pred CCChHHHHHHHccCCCCCCC---------CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEE
Q 017726 18 VHIPDQVIRAMNRNNEDYRS---------PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRII 88 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~~~~~---------~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl 88 (367)
..+.+++.+++.++.....+ ....+...++++.+++++|.++ +++++|+++++..++.+++.+||.|+
T Consensus 18 g~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g~~~---~~i~~g~~~a~~~~~~~l~~~gd~Vl 94 (370)
T TIGR02539 18 GVLTEAARKALVEFGDGYSVCDFCGGRLDQITKPPIHDFLEDLAEFLGMDE---ARVTHGAREGKFAVMHALCKEGDWVV 94 (370)
T ss_pred CCCcHHHHHHHHHHhhccccccccccccccccchHHHHHHHHHHHHhCCCc---eEEECChHHHHHHHHHHhhCCCCEEE
Confidence 35788888998887553211 1122356788888999999975 45679999999999999999999999
Q ss_pred EEeCCcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccC---CCCccEEEEEecCCCccccccHHHHHHHH
Q 017726 89 SFLIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADT---AHTIKAICIVHNETATGVTNNLSKVRKLL 163 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~---~~~~~lv~~~~~~n~tG~~~~~~~i~~~~ 163 (367)
+..++|++.. ..++..|++++.++.+. ++.+|++++++++++.+ .+++++|++++|+||+|.+.|+++|.++|
T Consensus 95 ~~~~~h~s~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la 172 (370)
T TIGR02539 95 LDGLAHYTSY--VAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVC 172 (370)
T ss_pred ECCcccHHHH--HHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHH
Confidence 9888888764 45688899999999763 46789999999987421 02578999999999999999999999999
Q ss_pred HhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhc
Q 017726 164 DEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL 243 (367)
Q Consensus 164 ~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (367)
++ +|+++++|++|+.+..+.+....+.|+++.|+||+++++.++|++++++++++.+.....+ +..+ .. .+.
T Consensus 173 ~~--~~~~livDea~~~g~~~~~~~~~~~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~-~~~~--~~--~~~- 244 (370)
T TIGR02539 173 RE--KGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRY-SPVK--EV--ELL- 244 (370)
T ss_pred HH--cCCeEEEECccccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhhcccccC-Cccc--ee--eee-
Confidence 99 9999999999999876666655678999999999997656689999999999888754321 1110 00 000
Q ss_pred CCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCC-------
Q 017726 244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH------- 316 (367)
Q Consensus 244 ~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------- 316 (367)
+ .+.......++.+++....+. ++.. .+..++++++++.|+++|++++...+ ...+++++++|.-
T Consensus 245 ~----~~~~~~~~~~~~~al~~~~~~-l~~~-~~~~~~~~~l~~~L~~~g~~~~~~~~--s~t~~v~~~~~~~~~~~~~~ 316 (370)
T TIGR02539 245 G----CTSRGAPIVTMMASFPHVVER-VKRW-DEEVKKTRWFVAELEDIGFIQLGQKP--KEHDLVKFETPGFHEIAQKH 316 (370)
T ss_pred c----ccccccHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHhCCcEEEccCC--CcCceEEEECCchhHHhhhh
Confidence 1 112222234444455443222 3333 33344567999999999988753222 2344666776421
Q ss_pred -CCHHHHHHHHHhhCCeE-EccCCCCCCCcEEEEeecC-CCCHHHHHHhhhh
Q 017726 317 -INSSEIVRRAWQRYNLS-LGLGLNKVAGKVFRIGHLG-HLNEVMFNFQLLF 365 (367)
Q Consensus 317 -~~~~~l~~~L~~~~gv~-v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 365 (367)
.+...+.+.|.++ ||. ++++. +.++||+.++ ..++.+....+|+
T Consensus 317 ~~~~~~~~~~L~e~-GI~~ir~~~----~~~iRis~~~~t~e~i~~l~~~L~ 363 (370)
T TIGR02539 317 KRRGYFLYEELKKR-GIHGIRSGQ----TKYFKLSVYGLTKEQVEYVVDSFE 363 (370)
T ss_pred ccccHHHHHHHHhC-CCccccCCc----ceEEEEEecCCCHHHHHHHHHHHH
Confidence 1234688888765 997 55322 3589999633 3444555555554
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.8e-30 Score=234.92 Aligned_cols=307 Identities=17% Similarity=0.141 Sum_probs=217.6
Q ss_pred hHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCc
Q 017726 21 PDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQ 94 (367)
Q Consensus 21 ~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~ 94 (367)
++.+.+++.+.... ...|.......++|+.+++++ |.. .++++++++|+++++..++.+++.+||.|++++|.|
T Consensus 46 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y 125 (393)
T PRK05764 46 PEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYW 125 (393)
T ss_pred CHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCC
Confidence 46666666553321 222333344577888888887 322 234699999999999999998899999999999987
Q ss_pred chHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCCC
Q 017726 95 FSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHP 169 (367)
Q Consensus 95 ~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~ 169 (367)
+.. ..+++..|++++.++.+. ++.+|+++++++++ ++++++++++|+||||.+++ +++|.++|++ +|
T Consensus 126 ~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~--~~ 197 (393)
T PRK05764 126 VSY--PEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAIT----PKTKALILNSPSNPTGAVYSPEELEAIADVAVE--HD 197 (393)
T ss_pred cch--HHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhC----ccceEEEEECCCCCCCcccCHHHHHHHHHHHHH--CC
Confidence 764 355778899999999864 35688999999987 46799999999999999986 6778888888 99
Q ss_pred cEEEEeeeeccCcee------e-c--cccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHH
Q 017726 170 ALFLVDGVSSICAID------F-R--MDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYI 238 (367)
Q Consensus 170 ~~vi~D~~~~~~~~~------~-~--~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (367)
+++++|++|+..... + . ....+.++++.|++|.++ .+| +|+++.++++++++.....
T Consensus 198 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~G~RiG~i~~~~~~~~~~~~~~~----------- 265 (393)
T PRK05764 198 IWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYA-MTGWRLGYAAGPKELIKAMSKLQS----------- 265 (393)
T ss_pred cEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCccccc-CccceeEEEecCHHHHHHHHHHHh-----------
Confidence 999999998653321 0 1 122346899999999984 455 6999999998887764211
Q ss_pred HHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCC
Q 017726 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHI 317 (367)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 317 (367)
.. .+.++.....++..++... ...+++.+++++++++.+.+.|++. |+.+..+ .++.+++++++...
T Consensus 266 -----~~--~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~----~g~~~~~~~~~~~~ 333 (393)
T PRK05764 266 -----HS--TSNPTSIAQYAAVAALNGP-QDEVEEMRQAFEERRDLMVDGLNEIPGLECPKP----EGAFYVFPNVSKLL 333 (393)
T ss_pred -----hc--ccCCChHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCC----CcceEEEEeccccc
Confidence 00 1123333323333333311 1226677888889999999999998 8887765 45667777775433
Q ss_pred -----CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 318 -----NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 318 -----~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
+..++.+.|.+++||.+.+|..+..++++||++....++.+.
T Consensus 334 ~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis~~~~~~~~~~ 380 (393)
T PRK05764 334 GKSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSYATSLEDLEE 380 (393)
T ss_pred ccccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEEecCCHHHHHH
Confidence 247898888777899999986554468899997654333333
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.1e-30 Score=232.66 Aligned_cols=309 Identities=13% Similarity=0.096 Sum_probs=220.7
Q ss_pred CCCChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcc
Q 017726 17 PVHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF 95 (367)
Q Consensus 17 p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~ 95 (367)
|.++++.+.+++.+.... ...|.. ....++|+.++++++++++ +|++|+|+++++..++.+++++||.|++++|.|+
T Consensus 35 ~~~~~~~~~~a~~~~~~~~~~~y~~-~~~~~lr~aia~~~~~~~~-~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~ 112 (353)
T PRK05387 35 PYPPSPKVLEAIRAALGDDLRLYPD-PNADALRQAIAAYYGLDPE-QVFVGNGSDEVLAHAFLAFFNHDRPLLFPDITYS 112 (353)
T ss_pred CCCCCHHHHHHHHHHhhhhhhcCCC-CcHHHHHHHHHHHhCCCHH-HEEEcCCHHHHHHHHHHHhcCCCCEEEEeCCCHH
Confidence 345577888888764432 112221 2347999999999998764 5999999999999999999999999999999775
Q ss_pred hHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEe
Q 017726 96 SLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD 175 (367)
Q Consensus 96 ~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D 175 (367)
.+ ...++..|++++.++.++++.+|++++++ +++++++++||||||.++|.+++.++++.. +++++++|
T Consensus 113 ~~--~~~~~~~g~~~~~v~~~~~~~~d~~~l~~--------~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~-~~~~livD 181 (353)
T PRK05387 113 FY--PVYAGLYGIPYEEIPLDDDFSIDVEDYLR--------PNGGIIFPNPNAPTGIALPLAEIERILAAN-PDSVVVID 181 (353)
T ss_pred HH--HHHHHHcCCEEEEeecCCCCCCCHHHHHh--------cCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCcEEEEe
Confidence 43 34467889999999998778899998863 237899999999999999999999999873 39999999
Q ss_pred eeeccCcee--ecc-ccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCC
Q 017726 176 GVSSICAID--FRM-DEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT 250 (367)
Q Consensus 176 ~~~~~~~~~--~~~-~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (367)
++|...... ... ......+++.|++|.++ .+| +|++++++++++++..... .+..++
T Consensus 182 e~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~GlR~G~~~~~~~~~~~l~~~~~-----------------~~~~~~ 243 (353)
T PRK05387 182 EAYVDFGGESAIPLIDRYPNLLVVQTFSKSRS-LAGLRVGFAIGHPELIEALNRVKN-----------------SFNSYP 243 (353)
T ss_pred CcccccCCcchHHHHhhCCCEEEEEehhHhhc-chhhhceeeecCHHHHHHHHHhhc-----------------cCCCCC
Confidence 998532211 111 12245799999999884 334 7999999999887764311 001233
Q ss_pred CcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhC
Q 017726 251 PSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRY 330 (367)
Q Consensus 251 ~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 330 (367)
.+.....++..++.. ...+++.+++++++++.+.+.|++.|+.+.++ .+++++++++ +.+..++++.|.+ +
T Consensus 244 ~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-----~~~~~~~~~~-~~~~~~~~~~l~~-~ 314 (353)
T PRK05387 244 LDRLAQAGAIAAIED--EAYFEETRAKVIATRERLVEELEALGFEVLPS-----KANFVFARHP-SHDAAELAAKLRE-R 314 (353)
T ss_pred cCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCeECCC-----cCcEEEEECC-CCCHHHHHHHHHH-C
Confidence 555444444444432 11266778888999999999999988766443 3446778874 5678899999965 5
Q ss_pred CeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 331 NLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 331 gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
||.++....+...+++|+++. ..++.+...++|++
T Consensus 315 gi~v~~~~~~~~~~~iRis~~-~~~~~~~~~~~L~~ 349 (353)
T PRK05387 315 GIIVRHFNKPRIDQFLRITIG-TDEEMEALVDALKE 349 (353)
T ss_pred CEEEEECCCCCCCCeEEEEeC-CHHHHHHHHHHHHH
Confidence 999975432333568999964 44555555555543
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-30 Score=235.66 Aligned_cols=300 Identities=15% Similarity=0.102 Sum_probs=220.0
Q ss_pred CCChHHHHHHHccCCCCCC-----CCcHHHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHHccCC---------
Q 017726 18 VHIPDQVIRAMNRNNEDYR-----SPAVPALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNTLS--------- 82 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~-~~~~v~~~~ggt~al~~~~~~~~~--------- 82 (367)
...+..+.+.+....+... ++......+++++++++++|.+ .+.++++|+|||+|+..++.++..
T Consensus 9 ~~~~~~~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~ 88 (345)
T cd06450 9 MDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAG 88 (345)
T ss_pred CcHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcc
Confidence 3344555666665444322 2334566777888888899987 444589999999999988876532
Q ss_pred ---CC--CeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcc--CCCCccEEEEEecCCCcccccc
Q 017726 83 ---PG--DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAAD--TAHTIKAICIVHNETATGVTNN 155 (367)
Q Consensus 83 ---~g--d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~--~~~~~~lv~~~~~~n~tG~~~~ 155 (367)
++ +.|+++++.|++. ...++..|.+++.++.++++.+|++++++++++. ...+++++++++++|++|.+.|
T Consensus 89 ~~~~~~~~~v~~~~~~h~~~--~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~ 166 (345)
T cd06450 89 GGRGIDKLVIVCSDQAHVSV--EKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP 166 (345)
T ss_pred cccccCCeEEEEcCcchhHH--HHHHHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC
Confidence 23 3667777777664 3456667999999999887889999999999851 0026789999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeeccCceeecccc------ccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCc
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDE------WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR 229 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~------~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~ 229 (367)
+++|.++|++ +|+++++|++|+.+..+.+... .++|++++|+||++++|.|+|+++.+
T Consensus 167 ~~~i~~~~~~--~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~-------------- 230 (345)
T cd06450 167 LEEIADLAEK--YDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR-------------- 230 (345)
T ss_pred HHHHHHHHHH--hCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH--------------
Confidence 9999999999 9999999999988765443221 26899999999999888888888765
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCce
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTV 308 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~ 308 (367)
.+++.++++.+...|+++++++..++++++.+.|+++ ++.+..+ ....+
T Consensus 231 --------------------------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~----~~~~i 280 (345)
T cd06450 231 --------------------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGE----PNLSL 280 (345)
T ss_pred --------------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC----CceeE
Confidence 1455667777888889999999999999999999997 7776553 12346
Q ss_pred EEEEcCC----CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCC-CH--HHHHHhhhhc
Q 017726 309 TAVIVPS----HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHL-NE--VMFNFQLLFQ 366 (367)
Q Consensus 309 ~~~~~~~----~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~-~~--~~~~~~~l~~ 366 (367)
+.|+.+. +.+..++.++|.++ |+.+.++.....+.++|+++.... +. .|.+.+.|.+
T Consensus 281 v~f~~~~~~~~~~~~~~i~~~L~~~-g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 281 VCFRLKPSVKLDELNYDLSDRLNER-GGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred EEEEECCcchhhHHHHHHHHHHHhc-CCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 7787754 24567899999765 555544432224567999988765 43 4445555543
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=229.45 Aligned_cols=299 Identities=14% Similarity=0.124 Sum_probs=219.8
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC------CCCCeEEEEeCCcchHHHHHHHHHhCCceE
Q 017726 38 PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL------SPGDRIISFLIGQFSLLWIDQQQRLNFNVD 111 (367)
Q Consensus 38 ~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~ 111 (367)
+......+++++.+++++|+++.+ +++++|+++++..++.++. .+||+|++++++|++ +...++..|++++
T Consensus 55 ~~~~~~~~~~~~~la~~~g~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~--~~~~~~~~G~~~~ 131 (373)
T TIGR03812 55 PGTKKIEEEVVGSLGNLLHLPDAY-GYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFS--FEKAAEMLGLELR 131 (373)
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCC-eEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHH--HHHHHHHcCCeEE
Confidence 455677789999999999997654 6778899999887765542 467899999998877 3456788899999
Q ss_pred EEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCce--------
Q 017726 112 VVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI-------- 183 (367)
Q Consensus 112 ~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~-------- 183 (367)
.++.+.++.+|++++++++++ ++..+++.+++||||.+.|+++|.++|++ +|+++++|++|+.+..
T Consensus 132 ~v~~~~~~~~d~~~l~~~l~~----~~~~vv~~~~~~~tG~~~~~~~i~~l~~~--~~~~livD~a~~~~~~~~~~~~~~ 205 (373)
T TIGR03812 132 YAPLDEDYTVDVKDVEDLIDD----NTIGIVGIAGTTELGQIDDIEELSKIALE--NGIYLHVDAAFGGFVIPFLKKGYN 205 (373)
T ss_pred EEeeCCCCCcCHHHHHHHHhh----CcEEEEEECCCCCCCccCCHHHHHHHHHH--cCCeEEEEcCchhHHHHHHhcCCC
Confidence 999988888999999999974 44555555588999999999999999999 9999999999975532
Q ss_pred --eeccccccceEEEecCCCcccCCCcce-eeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHH
Q 017726 184 --DFRMDEWGIDVALTGSQKALSLPTGMG-IVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLR 260 (367)
Q Consensus 184 --~~~~~~~~~d~~~~s~~K~~~g~~g~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 260 (367)
.++....++|++++|+|||..++.++| +++.++++++.+... . .+... .......++++...++++.
T Consensus 206 ~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~l~~~-~-~~~~~--------~~~~~~~gt~~~~~~~~~~ 275 (373)
T TIGR03812 206 PPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYLSVD-A-PYLTV--------KKQATITGTRSGASAAATY 275 (373)
T ss_pred CCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHhhhccc-C-cccCC--------CCCcceEeechhHHHHHHH
Confidence 233333478999999999866665565 455678877766421 1 11100 0000012457777788999
Q ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC
Q 017726 261 AALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK 340 (367)
Q Consensus 261 ~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~ 340 (367)
++++.+.++|++++.++..++++++++.|+++|+....+ + .. .++.++.+ +..++.++|.++ ||.+..+.
T Consensus 276 ~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~--~~-~~v~~~~~---~~~~v~~~L~~~-gi~v~~~~-- 345 (373)
T TIGR03812 276 AVIKYLGREGYRKIVAECMENTRYLVEELKKIGFEPVIE-P--VL-NIVAFEVD---DPEEVRKKLRDR-GWYVSVTR-- 345 (373)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEcC-C--Cc-eEEEEEeC---CHHHHHHHHHHC-CceeccCC--
Confidence 999988888899999999999999999999987653332 1 23 35667764 356899999765 99987642
Q ss_pred CCCcEEEEeecCCCCH--HHHHHhhhhc
Q 017726 341 VAGKVFRIGHLGHLNE--VMFNFQLLFQ 366 (367)
Q Consensus 341 ~~~~~iRi~~~~~~~~--~~~~~~~l~~ 366 (367)
.+.++|+++....+. .|.+.+.|++
T Consensus 346 -~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 346 -CPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred -CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 246899998765544 4555555544
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-30 Score=241.97 Aligned_cols=304 Identities=13% Similarity=0.077 Sum_probs=208.5
Q ss_pred CChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHh------cCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 19 HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIF------KTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
++|+.+++++.+.......|....+..++|+.|++++ ++++ ++|++|+|+++++.+++.+++++||.|+++.|
T Consensus 162 ~~p~~~~~~~~~~~~~~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~-~~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P 240 (517)
T PRK13355 162 RTPDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQLKGLPNVDV-DDIYTGNGVSELINLSMSALLDDGDEVLIPSP 240 (517)
T ss_pred CCCHHHHHHHHHHhhcCCCCCCCcChHHHHHHHHHHHHhcCCCCCCh-hHEEEeCcHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 4488889988875443334554566789999999998 4554 45999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcC
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR 167 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~ 167 (367)
.|+.+. ..++..|.+++.++++. ++.+|+++++++++ +++|+|++++||||||.+++ +++|.++|++
T Consensus 241 ~y~~y~--~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~----~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~-- 312 (517)
T PRK13355 241 DYPLWT--ACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKIT----SRTKAIVIINPNNPTGALYPREVLQQIVDIARE-- 312 (517)
T ss_pred CCcCHH--HHHHHCCCEEEEeecCcccCCCCCHHHHHHhcC----cCceEEEEECCCCCCCcCcCHHHHHHHHHHHHH--
Confidence 887643 55778899999998864 46789999999987 47799999999999999998 6778888998
Q ss_pred CCcEEEEeeeeccCcee----eccccc--c-ceEEEecCCCcccCCCc--ceeeeeC--HHHHHHhccCCCCceeechHH
Q 017726 168 HPALFLVDGVSSICAID----FRMDEW--G-IDVALTGSQKALSLPTG--MGIVCAS--PKALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~----~~~~~~--~-~d~~~~s~~K~~~g~~g--~g~~~~~--~~~~~~~~~~~~~~~~~~~~~ 236 (367)
++++||+|++|...... .++... + ..+++.|+||.++ .+| +|+++.+ +++++.+....
T Consensus 313 ~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~-~~G~RiG~~i~~~~~~~~~~~~~~l---------- 381 (517)
T PRK13355 313 HQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHM-IAGYRIGWMILSGNKRIAKDYIEGL---------- 381 (517)
T ss_pred cCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhcc-CcccceEEEEeeCchhhHHHHHHHH----------
Confidence 99999999998743321 111111 1 2344589999973 444 7999853 44332221100
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEc
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIF--EEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV 313 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~--~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~ 313 (367)
.... .. ....+.....+...++.... +.-++.. ++..+.++++.+.|+++ |+.+..| .+++++|+++
T Consensus 382 --~~~~-~~--~~~~~~~~q~a~~~aL~~~~~~~~~~~~~-~~~~~~r~~l~~~L~~~~g~~~~~p----~g~fy~~~~l 451 (517)
T PRK13355 382 --NMLA-NM--RLCSNVPAQSIVQTALGGHQSVKDYLVPG-GRVYEQRELVYNALNAIPGISAVKP----KAAFYIFPKI 451 (517)
T ss_pred --HHHh-cC--cCCcChHHHHHHHHHhcCCccHHHHHHHH-HHHHHHHHHHHHHHhcCCCcccCCC----CeeeEEEeec
Confidence 0000 00 11244433344444543110 0112222 34455678999999988 8888777 5666777777
Q ss_pred CCC----CCHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecC
Q 017726 314 PSH----INSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLG 352 (367)
Q Consensus 314 ~~~----~~~~~l~~~L~~~~gv~v~~g~~~~--~~~~iRi~~~~ 352 (367)
+.+ .+..+++..+.++.||.+.+|..+. .+++|||++..
T Consensus 452 ~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~~ 496 (517)
T PRK13355 452 DVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYLP 496 (517)
T ss_pred CcccCCCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeCC
Confidence 432 2456777776677799999985442 45789999853
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=232.01 Aligned_cols=304 Identities=13% Similarity=0.062 Sum_probs=209.8
Q ss_pred ChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHh----cCC-CCc-eEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 20 IPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIF----KTT-SGT-PFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~----~~~-~~~-~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
.|..+++++.+.... ..+|.......++|+.+++++ |.+ .++ +|++|+|+++++..++.+++.+||.|++++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~ 126 (403)
T PRK08636 47 TPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPD 126 (403)
T ss_pred CCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhCCCCCEEEEcC
Confidence 355566666553221 233443455667788887776 543 333 599999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCC--CCCCCCHHHH----HHHHhccCCCCccEEEEEecCCCccccccH---HHHHHH
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESD--WGEGAKLDVL----ASKLAADTAHTIKAICIVHNETATGVTNNL---SKVRKL 162 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~e~l----~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~---~~i~~~ 162 (367)
|.|+... ..++..|.+++.++++ .++.+|++.+ ++++++.. ++++++++++||||||.+++. ++|.++
T Consensus 127 P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~-~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~ 203 (403)
T PRK08636 127 PAYPIHS--QAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESS-PKPKYVVVNFPHNPTTATVEKSFYERLVAL 203 (403)
T ss_pred CCCcchH--HHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhcc-CCceEEEEeCCCCCCCccCCHHHHHHHHHH
Confidence 9877653 5577789999999874 3467887754 55555433 578999999999999999975 567778
Q ss_pred HHhcCCCcEEEEeeeeccCcee----ec---cccc-cceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeec
Q 017726 163 LDEYRHPALFLVDGVSSICAID----FR---MDEW-GIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFD 233 (367)
Q Consensus 163 ~~~~~~~~~vi~D~~~~~~~~~----~~---~~~~-~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 233 (367)
|++ ++++||+|++|...... .+ .... ...+++.|+||.++ ...++|+++.++++++.+.....
T Consensus 204 a~~--~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~~~~li~~~~~~~~------ 275 (403)
T PRK08636 204 AKK--ERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVGNKKLVGALKKIKS------ 275 (403)
T ss_pred HHH--cCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccceeeeeeCCHHHHHHHHHHHH------
Confidence 888 99999999998744321 11 1111 23466789999993 23447999999999887764211
Q ss_pred hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEc
Q 017726 234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIV 313 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 313 (367)
.. + .+++...+. ++..++.... .-++++++.+.++++.+.+.|++.|+.+..+ .++.++|+++
T Consensus 276 -------~~-~---~~~~~~~q~-~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p----~~g~~~~~~l 338 (403)
T PRK08636 276 -------WL-D---YGMFTPIQV-AATIALDGDQ-SCVEEIRETYRKRRDVLIESFANAGWELQKP----RASMFVWAKI 338 (403)
T ss_pred -------Hh-c---ccCChHHHH-HHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHHCCCcccCC----CcceEEEEEC
Confidence 00 0 111233222 2222332111 1267778888999999999999888776665 4667889998
Q ss_pred CCC---CCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeec
Q 017726 314 PSH---INSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHL 351 (367)
Q Consensus 314 ~~~---~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~ 351 (367)
++. .+..++++.+.+++||.+.+|..+ ..++++||++.
T Consensus 339 ~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~ 381 (403)
T PRK08636 339 PEPARHLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALI 381 (403)
T ss_pred CCccCCCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEec
Confidence 653 346789888777779999998443 23468999975
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=234.75 Aligned_cols=303 Identities=14% Similarity=0.068 Sum_probs=214.0
Q ss_pred CChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhcC----------C-CCceEEecCChhHHHHHHHHccCCCCC
Q 017726 19 HIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKT----------T-SGTPFLIPTTGTGAWESALTNTLSPGD 85 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~----------~-~~~~v~~~~ggt~al~~~~~~~~~~gd 85 (367)
.+++.+.+++.+.... ...|.......++|+.++++++. . .+++|++|+|+++++.+++.+++.+||
T Consensus 50 ~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd 129 (412)
T PTZ00433 50 LTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALCDEGD 129 (412)
T ss_pred CCCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhcCCCC
Confidence 3678888888774332 23343334567899999998862 1 235699999999999999999999999
Q ss_pred eEEEEeCCcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHH
Q 017726 86 RIISFLIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVR 160 (367)
Q Consensus 86 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~ 160 (367)
.|+++.|.|..+ ...++..|+++..++.+. ++.+|++++++++. +++++|++++||||||.+++ +++|.
T Consensus 130 ~vlv~~P~y~~~--~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~----~~~~~i~~~~p~NPtG~~~s~~~~~~l~ 203 (412)
T PTZ00433 130 NILVPAPGFPHY--ETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVD----DRTKALIMTNPSNPCGSNFSRKHVEDII 203 (412)
T ss_pred EEEEccCCcccH--HHHHHHcCCEEEEEecCccccCcCCHHHHHHHhc----cCceEEEEeCCCCCCCcccCHHHHHHHH
Confidence 999999987764 355788999999999864 45789999999887 46799999999999999887 56678
Q ss_pred HHHHhcCCCcEEEEeeeeccCcee----e---ccccccceEEEecCCCccc-CCCcceeeee------CHHHHHHhccCC
Q 017726 161 KLLDEYRHPALFLVDGVSSICAID----F---RMDEWGIDVALTGSQKALS-LPTGMGIVCA------SPKALEASKTAK 226 (367)
Q Consensus 161 ~~~~~~~~~~~vi~D~~~~~~~~~----~---~~~~~~~d~~~~s~~K~~~-g~~g~g~~~~------~~~~~~~~~~~~ 226 (367)
++|++ +|++||+|++|...... . ........+++.|+||.++ ...++|++++ .+++++.+....
T Consensus 204 ~~a~~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~ 281 (412)
T PTZ00433 204 RLCEE--LRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLG 281 (412)
T ss_pred HHHHH--cCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHh
Confidence 88888 99999999998743211 0 1111123578899999983 2244799986 234555544211
Q ss_pred CCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCC
Q 017726 227 SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFS 305 (367)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~ 305 (367)
. . .+..+.....++..++..-.+.-+++.+++++++++.+.+.|++. |+.+..+ .+
T Consensus 282 ~----------------~---~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p----~g 338 (412)
T PTZ00433 282 M----------------L---VCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMP----RG 338 (412)
T ss_pred h----------------c---cCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCC----Ce
Confidence 0 0 112333322333333322101127778888999999999999986 7776665 45
Q ss_pred CceEEEEcCC----C-CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC
Q 017726 306 DTVTAVIVPS----H-INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352 (367)
Q Consensus 306 ~~~~~~~~~~----~-~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~ 352 (367)
++++|++++. + .+..++++.|.+++||.+.+|..+...+++||++..
T Consensus 339 g~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~~ 390 (412)
T PTZ00433 339 SMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTISR 390 (412)
T ss_pred eEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEecC
Confidence 6678888753 2 256789999987779999998655446789999754
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=233.78 Aligned_cols=311 Identities=14% Similarity=0.047 Sum_probs=215.1
Q ss_pred CChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHh----c----CCCCceEEecCChhHHHHHHHHccCCCCCe--EE
Q 017726 19 HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIF----K----TTSGTPFLIPTTGTGAWESALTNTLSPGDR--II 88 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~----~----~~~~~~v~~~~ggt~al~~~~~~~~~~gd~--vl 88 (367)
++++.+.+++.+.......|.......++|+.+++++ | +++.++|++|+|+++++..++.+++++||. |+
T Consensus 41 ~~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~~~gd~~~vl 120 (393)
T TIGR03538 41 PTPAFVLEALRENLHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVV 120 (393)
T ss_pred CCCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHcCCCCcceEE
Confidence 5678888888875433333433344567888888877 3 333346999999999999999999999986 88
Q ss_pred EEeCCcchHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHH
Q 017726 89 SFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLL 163 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~ 163 (367)
++.|.|..+. ..++..|++++.++++++ +.+|++++++++. +++|+|++++||||||.+++ +++|.++|
T Consensus 121 v~~P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~----~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a 194 (393)
T TIGR03538 121 MPNPFYQIYE--GAALLAGAEPYFLNCTAENGFLPDFDAVPESVW----RRCQLLFVCSPGNPTGAVLSLDTLKKLIELA 194 (393)
T ss_pred ecCCCCcchH--HHHHhcCCeEEEeeccccCCCCCCHHHHHHHHh----hcceEEEEeCCCCCcCcccCHHHHHHHHHHH
Confidence 8888766543 457789999999998643 5679999999887 36799999999999999998 56777888
Q ss_pred HhcCCCcEEEEeeeeccCcee-----ec-------c--ccccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCC
Q 017726 164 DEYRHPALFLVDGVSSICAID-----FR-------M--DEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSV 228 (367)
Q Consensus 164 ~~~~~~~~vi~D~~~~~~~~~-----~~-------~--~~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~ 228 (367)
++ ++++||+|++|...... .+ . ......+++.|+||.++ ...++|+++.++++++++.....
T Consensus 195 ~~--~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~~l~~~~~~~~~- 271 (393)
T TIGR03538 195 DQ--YGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAEILKAFLRYRT- 271 (393)
T ss_pred HH--CCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcccceEEEecCHHHHHHHHHHHH-
Confidence 88 99999999998743321 00 0 01124589999999753 22447999999998887753210
Q ss_pred ceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCce
Q 017726 229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV 308 (367)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 308 (367)
+..++.+...+.++..++. .+.-+++.++.++++++.+.+.|++. +.+..+ .++.+
T Consensus 272 -----------------~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~p----~gg~f 327 (393)
T TIGR03538 272 -----------------YHGCAMPIPTQLASIAAWN--DEQHVRENRALYREKFAAVLEILGQV-LDLELP----DAGFY 327 (393)
T ss_pred -----------------hhccCcCHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHhh-CcccCC----CeeEE
Confidence 0011233332233332332 12226777888899999999999875 334344 46678
Q ss_pred EEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC--------CCcEEEEeecCCCCHHHHHHhhh
Q 017726 309 TAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV--------AGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 309 ~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~--------~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
+|++++ .+..++++.|.+++||.+.+|.... ..+++||++....+..+...+.|
T Consensus 328 ~~~~~~--~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~~~~~l~~~l~~l 389 (393)
T TIGR03538 328 LWPKVP--GDDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVAPLEECVEAAERI 389 (393)
T ss_pred EEEECC--CCHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecCCHHHHHHHHHHH
Confidence 889886 4567899998777899999985421 23579999866433333333333
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=234.53 Aligned_cols=309 Identities=13% Similarity=0.078 Sum_probs=214.0
Q ss_pred CCChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhcCC-----CCceEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 18 VHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTT-----SGTPFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~-----~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
.++++.+.+++.+.... ...|.......++|+.++++++.. ++++|++|+|+++++.+++.++.++||+|+++
T Consensus 68 ~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~~~Gd~Vlv~ 147 (430)
T PLN00145 68 FRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLP 147 (430)
T ss_pred CCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEc
Confidence 45677788887775432 223444456778999999998532 33569999999999999999999999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHh
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE 165 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~ 165 (367)
.|.|+.+. ..+...|.+++.++.. .++.+|+++++++++ ++++++++++|+||||.+++ +++|.++|++
T Consensus 148 ~P~y~~y~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~ 221 (430)
T PLN00145 148 RPGYPLYE--ARAVFSGLEVRHFDLLPERGWEVDLEGVEALAD----ENTVAMVIINPNNPCGSVYSYEHLAKIAETARK 221 (430)
T ss_pred CCCCccHH--HHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhC----cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99877643 4567789999988864 356799999999887 46799999999999999998 6678888888
Q ss_pred cCCCcEEEEeeeeccCcee----ecc---ccccceEEEecCCCcccCCCc--ceeeee--CHHHHHHhccCCCCceeech
Q 017726 166 YRHPALFLVDGVSSICAID----FRM---DEWGIDVALTGSQKALSLPTG--MGIVCA--SPKALEASKTAKSVRVFFDW 234 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~----~~~---~~~~~d~~~~s~~K~~~g~~g--~g~~~~--~~~~~~~~~~~~~~~~~~~~ 234 (367)
+|++||+|++|...... .+. ......+++.|+||.+. .+| +|++++ ++.+++.....
T Consensus 222 --~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~-~pG~RlG~iv~~~~~~~~~~~~~~--------- 289 (430)
T PLN00145 222 --LGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWV-VPGWRLGWIATCDPNGILKETKVV--------- 289 (430)
T ss_pred --cCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccC-CCCeeEEEEEEecchhhhhhhHHH---------
Confidence 99999999998753321 111 11235689999999974 444 699987 33333221000
Q ss_pred HHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccc-cCCCccCCCceEEEE
Q 017726 235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNC-TQKEEWFSDTVTAVI 312 (367)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~ 312 (367)
....... .. ...++.....++..++..-.+.-+++.++.++++++.+.+.|++. |+.+. .| .++++++++
T Consensus 290 -~~~~~~~-~~--~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P----~ga~y~~v~ 361 (430)
T PLN00145 290 -DSIRNYL-NI--STDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITCPHKP----EGSMFVMVK 361 (430)
T ss_pred -HHHHHHh-cc--cCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCC----CeeeEEEec
Confidence 0000000 00 011333333333334432111226778889999999999999887 77643 34 466678888
Q ss_pred cCC----CC-CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC
Q 017726 313 VPS----HI-NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352 (367)
Q Consensus 313 ~~~----~~-~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~ 352 (367)
++. +. +..++++.|.+++||.+.||..+...+++||++..
T Consensus 362 l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~~ 406 (430)
T PLN00145 362 LDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFAI 406 (430)
T ss_pred cChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCC
Confidence 742 22 56678888888889999999665456899999764
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=232.56 Aligned_cols=301 Identities=12% Similarity=0.106 Sum_probs=208.8
Q ss_pred CChHHHHHHHccCCC-CCCCCc----HHHHHHHHHHHHHHHhcCC--CCceEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 19 HIPDQVIRAMNRNNE-DYRSPA----VPALTKTLLEDIKKIFKTT--SGTPFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~-~~~~~~----~~~~~~~~~~~la~~~~~~--~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
++++.+.+++.+... ....|. .....+++.+.+++++|.+ +++++++|+|+++++..++.+++.+||+|+++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~ 121 (384)
T PRK12414 42 APDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALVHPGDEVIYFE 121 (384)
T ss_pred CCCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhcCCCCEEEEeC
Confidence 346667777665322 122232 3444555555555666875 234699999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcC
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR 167 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~ 167 (367)
|.|..+. ..++..|.+++.++.+. ++.+|++.++++++ +++|+|++++|+||||.+++ +++|.++|++
T Consensus 122 p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~----~~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~-- 193 (384)
T PRK12414 122 PSFDSYA--PIVRLQGATPVAIKLSPEDFRVNWDEVAAAIT----PRTRMIIVNTPHNPSATVFSAADLARLAQLTRN-- 193 (384)
T ss_pred CCccchH--HHHHHcCCEEEEEecCccccccCHHHHHhhcC----cccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHH--
Confidence 9876543 45677899999999874 56789999999987 46799999999999999975 6677888888
Q ss_pred CCcEEEEeeeeccCcee---e-cc---cc-ccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHH
Q 017726 168 HPALFLVDGVSSICAID---F-RM---DE-WGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDY 237 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~---~-~~---~~-~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (367)
+|+++++|++|...... . +. .. .+..+++.|+||.++ .+| +|++++++++++.+......
T Consensus 194 ~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~-~pGlRiG~~v~~~~l~~~l~~~~~~--------- 263 (384)
T PRK12414 194 TDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYH-VTGWRVGYCLAPAELMDEIRKVHQF--------- 263 (384)
T ss_pred CCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEeccccccc-CccceEEEEecCHHHHHHHHHHHhh---------
Confidence 99999999998743221 1 11 11 124699999999984 444 69999999998877643110
Q ss_pred HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC-
Q 017726 238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS- 315 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~- 315 (367)
. .+..+.....++. ..+.+. ...+.++.++++++.+.+.|++.|+.+..+ .+++++|++++.
T Consensus 264 ------~---~~~~s~~~q~a~~---~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~----~gg~~~~~~~~~~ 327 (384)
T PRK12414 264 ------M---VFSADTPMQHAFA---EALAEPASYLGLGAFYQRKRDLLARELAGSRFELLPS----EGSFFMLARFRHF 327 (384)
T ss_pred ------e---ecCCCcHHHHHHH---HHhcCChHHHHHHHHHHHHHHHHHHHHHhCCCeecCC----CcceEEEEccccc
Confidence 0 1123333223333 333221 134567788899999999999988777665 466677777743
Q ss_pred -CCCHHHHHHHHHhhCCeEEccCCCCC----CCcEEEEeecCC
Q 017726 316 -HINSSEIVRRAWQRYNLSLGLGLNKV----AGKVFRIGHLGH 353 (367)
Q Consensus 316 -~~~~~~l~~~L~~~~gv~v~~g~~~~----~~~~iRi~~~~~ 353 (367)
+.+..+++..+.+++||.+.+|..+. ..+++||++...
T Consensus 328 ~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~~ 370 (384)
T PRK12414 328 SDESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSKD 370 (384)
T ss_pred CCCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecCC
Confidence 23456777666667799999985331 246899997653
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=229.21 Aligned_cols=280 Identities=16% Similarity=0.145 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCC-CeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCC
Q 017726 44 TKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPG-DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAK 122 (367)
Q Consensus 44 ~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~g-d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d 122 (367)
..++++.+++++|++++ +|++++|+++++.+++.+++.+| |.|+++.|+|..+ ...++..|++++.++.+.++.+|
T Consensus 59 ~~~l~~~~a~~~g~~~~-~I~~~~Gs~e~i~~~~~~~~~~g~~~vli~~P~y~~y--~~~~~~~G~~~~~v~~~~~~~~d 135 (351)
T PRK01688 59 PKAVIENYAAYAGVKPE-QVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMY--SVSAETIGVEIRTVPTLDNWQLD 135 (351)
T ss_pred hHHHHHHHHHHhCCCHH-HEEEcCCHHHHHHHHHHHhcCCCCCEEEEcCCCHHHH--HHHHHHcCCEEEEeecCCCCCCC
Confidence 46899999999999775 59999999999999999988887 8999998977653 35678899999999998778899
Q ss_pred HHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceee---c-cccccceEEEec
Q 017726 123 LDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF---R-MDEWGIDVALTG 198 (367)
Q Consensus 123 ~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~---~-~~~~~~d~~~~s 198 (367)
++++++++. ++++|++|+||||||.+++.+++.++++....+++||+|++|....... + ....+.-+++.|
T Consensus 136 ~~~l~~~~~-----~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~~~~n~iv~rS 210 (351)
T PRK01688 136 LPAIADNLD-----GVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLVILRT 210 (351)
T ss_pred HHHHHHhcc-----CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHhhCCCEEEEec
Confidence 999998873 5699999999999999999888888887633468899999986543211 1 112235688999
Q ss_pred CCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh---ChHH
Q 017726 199 SQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE---GLEN 273 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~---g~~~ 273 (367)
+||.+ |.+| +|++++++++++.+..... ++..+... ..++...+.+. -+++
T Consensus 211 fSK~~-glaGlRiGy~i~~~~~i~~l~~~~~--------------------~~~v~~~~---~~~a~~~L~~~~~~~~~~ 266 (351)
T PRK01688 211 LSKAF-ALAGLRCGFTLANEEVINLLLKVIA--------------------PYPLSTPV---ADIAAQALSPQGIAAMRE 266 (351)
T ss_pred chHhh-cCHHHHHhHHhCCHHHHHHHHhccC--------------------CCCCCHHH---HHHHHHHHhcchHHHHHH
Confidence 99988 4666 5999999999888764321 23344322 22333333322 1556
Q ss_pred HHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC-CCCcEEEEeec
Q 017726 274 VIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK-VAGKVFRIGHL 351 (367)
Q Consensus 274 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~-~~~~~iRi~~~ 351 (367)
.++.+.++++++.+.|+++ ++..+.+ ....+++++++ +.+++.++|.+ +||.++.+... ...+++||++
T Consensus 267 ~~~~~~~~r~~l~~~L~~~~~~~~~~p----s~~nfi~~~~~---~~~~l~~~L~~-~gi~vr~~~~~~~~~~~iRis~- 337 (351)
T PRK01688 267 RVAEINANRQWLIAALKEIPCVEQVFD----SETNYILARFT---ASSAVFKSLWD-QGIILRDQNKQPGLSNCLRITI- 337 (351)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeECC----CCCcEEEEEcC---CHHHHHHHHHH-CCeEEEECCCcCCCCCeEEEeC-
Confidence 6777788899999999988 6643333 23446777774 56889999975 59999865322 2356899995
Q ss_pred CCCCHHHHHHhhh
Q 017726 352 GHLNEVMFNFQLL 364 (367)
Q Consensus 352 ~~~~~~~~~~~~l 364 (367)
+..++.+.+..+|
T Consensus 338 ~~~~e~~~l~~al 350 (351)
T PRK01688 338 GTREECQRVIDAL 350 (351)
T ss_pred CCHHHHHHHHHhh
Confidence 4556666666554
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=232.49 Aligned_cols=325 Identities=17% Similarity=0.146 Sum_probs=226.7
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCCC--------C---CCcHHHHHHH-HHHHHHHHhcCCCCceEEecCChhHHHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNEDY--------R---SPAVPALTKT-LLEDIKKIFKTTSGTPFLIPTTGTGAWES 75 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~~--------~---~~~~~~~~~~-~~~~la~~~~~~~~~~v~~~~ggt~al~~ 75 (367)
.+.+++.|||..+++.|++++.+..... + +....+..++ .++.+++++|.+.. .++++||++|+..
T Consensus 19 ~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~--~v~~~sgt~a~~~ 96 (402)
T cd00378 19 RETLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYA--NVQPHSGSQANLA 96 (402)
T ss_pred HhCeeeeccCCcCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCce--eeecCCcHHHHHH
Confidence 4678899999999999999998754211 1 1122233344 56678899998753 2444567899999
Q ss_pred HHHccCCCCCeEEEEeCCcchHHHH---HHHHHhCCceEEEeCCC---CCCCCHHHHHHHHhccCCCCccEEEEEecCCC
Q 017726 76 ALTNTLSPGDRIISFLIGQFSLLWI---DQQQRLNFNVDVVESDW---GEGAKLDVLASKLAADTAHTIKAICIVHNETA 149 (367)
Q Consensus 76 ~~~~~~~~gd~vl~~~~~~~~~~~~---~~~~~~g~~~~~v~~~~---~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~ 149 (367)
++.+++.+||+|++.++.|.++... ..++..|.++..++.+. ++.+|++++++++.+ ++++++++++++|+
T Consensus 97 ~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~---~~~~~v~~~~~~~~ 173 (402)
T cd00378 97 VYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALE---FKPKLIVAGASAYP 173 (402)
T ss_pred HHHHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHh---CCCCEEEecCcccC
Confidence 9999999999999999987765311 12455787777776643 578999999999864 46799999888764
Q ss_pred ccccccHHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCCcceeeeeCH-HHHHHhc
Q 017726 150 TGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASP-KALEASK 223 (367)
Q Consensus 150 tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~-~~~~~~~ 223 (367)
...|+++|.++|++ +|+++++|++|..+.. +.+.. ++|++++|+||++.|++| |+++.++ ++.+++.
T Consensus 174 --~~~~~~~I~~l~~~--~~~~li~D~a~~~g~~~~g~~~~~~~--~~dv~~~s~sK~l~G~~g-g~i~~~~~~~~~~l~ 246 (402)
T cd00378 174 --RPIDFKRFREIADE--VGAYLLVDMAHVAGLVAGGVFPNPLP--GADVVTTTTHKTLRGPRG-GLILTRKGELAKKIN 246 (402)
T ss_pred --CCcCHHHHHHHHHh--cCCEEEEEccchhhhhhcccCCCccc--CCcEEEeccccCCCCCCc-eEEEeccHHHHHHHH
Confidence 56799999999999 9999999999855432 22222 579999999999987776 6666665 7777765
Q ss_pred cCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCcc
Q 017726 224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEW 303 (367)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 303 (367)
..... +. ..++....+.++..++....+.+.++.++++.++++++.+.|++.|+.+....
T Consensus 247 ~~~~~---------------~~--~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--- 306 (402)
T cd00378 247 SAVFP---------------GL--QGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKERGFKVVSGG--- 306 (402)
T ss_pred HHhCc---------------cc--cCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEeecC---
Confidence 32111 10 12344445556666666555434677888899999999999999988775321
Q ss_pred CCCceEEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCCC------CCcEEEEeecCC------CCHHHHHHhhhh
Q 017726 304 FSDTVTAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNKV------AGKVFRIGHLGH------LNEVMFNFQLLF 365 (367)
Q Consensus 304 ~~~~~~~~~~~~-~~~~~~l~~~L~~~~gv~v~~g~~~~------~~~~iRi~~~~~------~~~~~~~~~~l~ 365 (367)
..++++++++++ +.+...+.+.| +++||.+.+...+. .+..+|+++... .++.+...++|.
T Consensus 307 ~~~~~v~v~~~~~~~~~~~~~~~l-~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~ 380 (402)
T cd00378 307 TDNHLVLVDLRPKGITGKAAEDAL-EEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIA 380 (402)
T ss_pred CCCeEEEEeCCccCCCHHHHHHHH-HHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHH
Confidence 245678888853 44556677766 56699998643221 345799998652 344555555554
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=230.39 Aligned_cols=311 Identities=13% Similarity=0.096 Sum_probs=221.9
Q ss_pred CCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcch
Q 017726 17 PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFS 96 (367)
Q Consensus 17 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~ 96 (367)
+.+.++.+.+++.+......+|... ...++|+.++++++++++ +|++++|+++++..++.+++++||.|++.+|.|+.
T Consensus 43 ~~~~~~~~~~a~~~~~~~~~~Y~~~-~~~~Lr~~ia~~~~~~~~-~I~it~G~~~~l~~~~~~~~~~gd~vlv~~p~y~~ 120 (369)
T PRK08153 43 GFGPSPSVIAAMREAAAEIWKYGDP-ENHDLRHALAAHHGVAPE-NIMVGEGIDGLLGLIVRLYVEPGDPVVTSLGAYPT 120 (369)
T ss_pred CCCCCHHHHHHHHHHHHHhhcCCCC-ccHHHHHHHHHHhCCCHH-HEEEcCCHHHHHHHHHHHhcCCCCEEEECCCcchH
Confidence 5567788888887753321222212 257999999999998764 59999999999999999889999999999998776
Q ss_pred HHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEee
Q 017726 97 LLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDG 176 (367)
Q Consensus 97 ~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~ 176 (367)
+. ..++..|.+++.++.+.+ .+|++++++.+.+ ++++++++++|+||||.+++.+++.++++..+++++||+|+
T Consensus 121 ~~--~~~~~~g~~~~~vp~~~~-~~~~~~l~~~~~~---~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE 194 (369)
T PRK08153 121 FN--YHVAGFGGRLVTVPYRDD-REDLDALLDAARR---ENAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDE 194 (369)
T ss_pred HH--HHHHHcCCeEEEeeCCCC-CCCHHHHHHHhcc---cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeC
Confidence 43 345668999999998655 4788888877653 46799999999999999999999999988744689999999
Q ss_pred eeccCcee---eccc-cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCC
Q 017726 177 VSSICAID---FRMD-EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT 250 (367)
Q Consensus 177 ~~~~~~~~---~~~~-~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (367)
+|...... .... .....+++.|++|.++ .+| +|++++++++++.+..... .++
T Consensus 195 ~y~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g-~~GlRiG~~v~~~~~~~~l~~~~~--------------------~~~ 253 (369)
T PRK08153 195 AYCETAPAGAAPPIDTDDPNVIRMRTFSKAYG-LAGARVGYAIGAPGTIKAFDKVRN--------------------HFG 253 (369)
T ss_pred chhhhcCcccchhhhhcCCCEEEEecchHhcc-CcchheeeeecCHHHHHHHHHhhc--------------------CCC
Confidence 98643321 1111 1124588999999994 444 6999999998887764311 123
Q ss_pred CcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC-CCCHHHHHHHHHhh
Q 017726 251 PSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS-HINSSEIVRRAWQR 329 (367)
Q Consensus 251 ~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~ 329 (367)
.+...+.++.++++. ..-+++.++..+++++.+.+.|++.|+.+.++ .+++++++++. .....++.+.|.+
T Consensus 254 ~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~p~-----~~~f~~~~~~~~~~~a~~l~~~l~~- 325 (369)
T PRK08153 254 MNRIAQAAALAALKD--QAYLAEVVGKIAAARDRIAAIARANGLTPLPS-----ATNFVAIDCGRDGAFARAVLDGLIA- 325 (369)
T ss_pred CCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCccCCC-----cCcEEEEECCCCcccHHHHHHHHHH-
Confidence 555444444444431 11166778888899999999999888765432 34467777642 3456788888875
Q ss_pred CCeEEc-cCCCCCCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 330 YNLSLG-LGLNKVAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 330 ~gv~v~-~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
+||.++ ++... ...++||++. ..++.+.+.++|++
T Consensus 326 ~Gi~v~~p~~~~-~~~~iRis~~-~~~~~~~~~~al~~ 361 (369)
T PRK08153 326 RDIFVRMPGVAP-LDRCIRVSCG-PDEELDLFAEALPE 361 (369)
T ss_pred CCeEEeeCCCCC-CCCeEEEecC-CHHHHHHHHHHHHH
Confidence 499996 55432 2458999965 55566666666653
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=232.48 Aligned_cols=303 Identities=14% Similarity=0.116 Sum_probs=209.7
Q ss_pred CChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHh----cC--CCCceEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 19 HIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIF----KT--TSGTPFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~----~~--~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
++++.+++++.+.... ...|.......++|+.+++++ |. +++++|++|+|+++++..++.+++.+||.|+++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vl~~ 122 (405)
T PRK09148 43 PTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCP 122 (405)
T ss_pred CCCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhcCCCCEEEEc
Confidence 3467777777664321 123333344567888888877 44 233369999999999999999999999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccH---HHHHHHHHhcC
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL---SKVRKLLDEYR 167 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~---~~i~~~~~~~~ 167 (367)
+|.|+.+. ..++..|+++..++.+.++. +++++++++.... ++++++++++|+||||.+++. ++|.++|++
T Consensus 123 ~P~y~~~~--~~~~~~g~~v~~v~~~~~~~-~~~~l~~~~~~~~-~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~-- 196 (405)
T PRK09148 123 NPSYPIHA--FGFIMAGGVIRSVPAEPDEE-FFPALERAVRHSI-PKPIALIVNYPSNPTAYVADLDFYKDVVAFAKK-- 196 (405)
T ss_pred CCCCcccH--HHHHhcCCEEEEEeCCCCCC-CccCHHHHHhhcc-ccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHH--
Confidence 99887753 34567899999999875432 3455666655332 578999999999999999986 567888888
Q ss_pred CCcEEEEeeeeccCcee---e----cccc-ccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHH
Q 017726 168 HPALFLVDGVSSICAID---F----RMDE-WGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDY 237 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~---~----~~~~-~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (367)
++++||+|++|...... . .... .+..+++.|+||.++ .+| +|++++++++++.+.....
T Consensus 197 ~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~-~pGlR~G~~v~~~~~i~~l~~~~~---------- 265 (405)
T PRK09148 197 HDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFS-MAGWRMGFAVGNERLIAALTRVKS---------- 265 (405)
T ss_pred cCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccC-CcchheeeeeCCHHHHHHHHHHHH----------
Confidence 99999999998743211 1 1111 124577899999984 444 7999999999887764210
Q ss_pred HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCC
Q 017726 238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI 317 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 317 (367)
+..++++.....++..++... +.-+++.++.++++++.+.+.|++.|+.+..+ .++.++|+++|...
T Consensus 266 --------~~~~~~~~~~q~~~~~~L~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p----~~g~f~~~~l~~~~ 332 (405)
T PRK09148 266 --------YLDYGAFTPIQVAATAALNGP-QDCIAEMRELYKKRRDVLVESFGRAGWDIPPP----AASMFAWAPIPEAF 332 (405)
T ss_pred --------HhccCCChHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC----CeeEEEEEECCCcc
Confidence 001123332222333333211 11267778889999999999999988766555 46667888886432
Q ss_pred ---CHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeec
Q 017726 318 ---NSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHL 351 (367)
Q Consensus 318 ---~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~ 351 (367)
+..++++.|.++.||.+.+|..+ ..++++||++.
T Consensus 333 ~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~ 371 (405)
T PRK09148 333 RHLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALV 371 (405)
T ss_pred CCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec
Confidence 45788888877779999998543 22468999974
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-29 Score=234.64 Aligned_cols=308 Identities=11% Similarity=0.018 Sum_probs=212.4
Q ss_pred CCCCChHHHHHHHccCCC----CCCCCcHHHHHHHHHHHHHHHhc----CC-CCceEEecCChhHHHHHHHHccC-CCCC
Q 017726 16 GPVHIPDQVIRAMNRNNE----DYRSPAVPALTKTLLEDIKKIFK----TT-SGTPFLIPTTGTGAWESALTNTL-SPGD 85 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~----~~~~~~~~~~~~~~~~~la~~~~----~~-~~~~v~~~~ggt~al~~~~~~~~-~~gd 85 (367)
++...|..+++++.+... ....|....+..++|+.++++++ .+ .+++|++|+|+++++..++.+++ ++||
T Consensus 85 ~~~~~P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD 164 (481)
T PTZ00377 85 VSSLFPADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSD 164 (481)
T ss_pred ccccCCHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCC
Confidence 444556777877764221 12235445667789999998875 22 34569999999999999999988 7999
Q ss_pred eEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhccC--CCCccEEEEEecCCCcccccc---HHH
Q 017726 86 RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADT--AHTIKAICIVHNETATGVTNN---LSK 158 (367)
Q Consensus 86 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~--~~~~~lv~~~~~~n~tG~~~~---~~~ 158 (367)
.|+++.|.|+.+. ..++..|.+++.++++++ +.+|++++++++++.. ..++|++++++|+||||.+++ +++
T Consensus 165 ~Vlv~~P~y~~y~--~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~ 242 (481)
T PTZ00377 165 GVMIPIPQYPLYS--AAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEE 242 (481)
T ss_pred EEEECCCCchhHH--HHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHH
Confidence 9999999877643 556788999999998743 5789999999987410 026899999999999999998 777
Q ss_pred HHHHHHhcCCCcEEEEeeeeccCce----ee-c-------cccc----cceEEEecCCCcccCCCc--ceeeee---CHH
Q 017726 159 VRKLLDEYRHPALFLVDGVSSICAI----DF-R-------MDEW----GIDVALTGSQKALSLPTG--MGIVCA---SPK 217 (367)
Q Consensus 159 i~~~~~~~~~~~~vi~D~~~~~~~~----~~-~-------~~~~----~~d~~~~s~~K~~~g~~g--~g~~~~---~~~ 217 (367)
|.++|++ ++++||+|++|..... ++ + +... ..-+++.|+||.+.+.+| +|++++ +++
T Consensus 243 i~~~a~~--~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~ 320 (481)
T PTZ00377 243 IIKFCYE--KGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPE 320 (481)
T ss_pred HHHHHHH--CCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHH
Confidence 8888988 9999999999874322 11 1 1110 124778899998655445 699986 888
Q ss_pred HHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHH----------HHHhChHHHHHHHHHHHHHHHH
Q 017726 218 ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL----------IFEEGLENVIERHRRLGKATRL 287 (367)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~----------~~~~g~~~~~~~~~~~~~~l~~ 287 (367)
+++++..... . .+.++.....++..++.. +.++ +++..+.++++++.+.+
T Consensus 321 li~~l~~~~~-----------------~--~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~rr~~l~~ 380 (481)
T PTZ00377 321 VREQIYKLAS-----------------I--NLCSNVVGQLMTGLMCNPPREGDASYPLYKRE-RDAIFTSLKRRAELLTD 380 (481)
T ss_pred HHHHHHHHhh-----------------e--ecCCChHHHHHHHHHhCCCCCCcccHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 8887764321 0 112444333444444421 1111 33444557888999999
Q ss_pred HHHHc-CCccccCCCccCCCceEEEEcC--CCC----------CHHHHHHHHHhhCCeEEccCCCCC---CCcEEEEeec
Q 017726 288 AVEAW-GLKNCTQKEEWFSDTVTAVIVP--SHI----------NSSEIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHL 351 (367)
Q Consensus 288 ~L~~~-g~~~~~~~~~~~~~~~~~~~~~--~~~----------~~~~l~~~L~~~~gv~v~~g~~~~---~~~~iRi~~~ 351 (367)
.|+++ |+.+..+ .+++++|++++ .+. +..+++..+.+++||.+.||..+. ..++||+++.
T Consensus 381 ~L~~~~g~~~~~p----~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~ 456 (481)
T PTZ00377 381 ELNKIEGVSCQPV----EGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITIL 456 (481)
T ss_pred HHhcCCCcEeecC----CeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEEC
Confidence 99987 8888776 45666776542 111 234566677777899999986543 2358999976
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=231.26 Aligned_cols=303 Identities=13% Similarity=0.052 Sum_probs=213.5
Q ss_pred CCChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhc-----CCCCceEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 18 VHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFK-----TTSGTPFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~-----~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
.++++.+.+++.+.... ..+|.......++|+.++++++ +++ ++|++|+|+++++.+++.+++.+||.|+++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~~~~~~-~~i~~t~G~~~al~~~~~~l~~~gd~v~i~ 125 (401)
T TIGR01264 47 LPTDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNPDGPIEA-DDVVLCSGCSHAIEMCIAALANAGQNILVP 125 (401)
T ss_pred CCCCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCH-HHEEECcChHHHHHHHHHHhCCCCCEEEEe
Confidence 46788888888764332 2234344556789999999987 333 459999999999999999999999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHh
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE 165 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~ 165 (367)
.|.|..+ ...++..|+++..++++. ++.+|++.+++.+++ +++++++++|+||||.+++ +++|.++|++
T Consensus 126 ~P~y~~~--~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~----~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~ 199 (401)
T TIGR01264 126 RPGFPLY--ETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDE----KTAALIVNNPSNPCGSVFSRQHLEEILAVAER 199 (401)
T ss_pred CCCChhH--HHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhcc----CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 9976543 356788999999988753 467999999998873 5699999999999999986 6678888888
Q ss_pred cCCCcEEEEeeeeccCcee----ec---cccccceEEEecCCCcccCCCc--ceeeeeCH------HHHHHhccCCCCce
Q 017726 166 YRHPALFLVDGVSSICAID----FR---MDEWGIDVALTGSQKALSLPTG--MGIVCASP------KALEASKTAKSVRV 230 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~----~~---~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~------~~~~~~~~~~~~~~ 230 (367)
+|++|++|++|...... .+ .......+++.|+||.+. .+| +|++++++ +.++.+...
T Consensus 200 --~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~-~~GlRiG~iv~~~~~~~~~~~~~~~~~~----- 271 (401)
T TIGR01264 200 --QCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWL-VPGWRLGWIIIHDRRGILRDIRDGLVKL----- 271 (401)
T ss_pred --CCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCC-CccceEEEEEecCcchhHHHHHHHHHHH-----
Confidence 99999999998743211 11 111112578899999863 444 69999874 233332211
Q ss_pred eechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceE
Q 017726 231 FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVT 309 (367)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~ 309 (367)
. .. .+.++.....++..++....+.-+++.++.++++++.+.+.|+++ |+.+..| .+++++
T Consensus 272 -----------~-~~--~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p----~~g~f~ 333 (401)
T TIGR01264 272 -----------S-QR--ILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLRPVMP----SGAMYM 333 (401)
T ss_pred -----------h-hc--cCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCC----CeeeEE
Confidence 0 00 112333333333334432111227778888999999999999998 7665555 466778
Q ss_pred EEEcCC-----CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCC
Q 017726 310 AVIVPS-----HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH 353 (367)
Q Consensus 310 ~~~~~~-----~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~ 353 (367)
|++++. ..+..++++.|.+++||.+.+|..+..++++||++...
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~~~ 382 (401)
T TIGR01264 334 MVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLTVP 382 (401)
T ss_pred EEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEcCC
Confidence 888632 23567899988777799999986544467899997544
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=227.76 Aligned_cols=305 Identities=11% Similarity=0.065 Sum_probs=211.1
Q ss_pred CCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcc
Q 017726 16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF 95 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~ 95 (367)
.|.++|+.+++++.+.......|.. ....++|+.++++++++++ +|++++|+++++..++.++ .+|+ +++..|.|.
T Consensus 30 ~~~~~p~~~~~a~~~~~~~~~~y~~-~~~~~lr~~ia~~~~~~~~-~i~it~Ga~~~l~~~~~~l-~~g~-viv~~P~y~ 105 (356)
T PRK08056 30 NPLGMPVSLKRAIIDNLDCAERYPD-VEYRHLHQALARHHQVPAS-WILAGNGETESIFAVVSGL-KPRR-AMIVTPGFA 105 (356)
T ss_pred CCCCCCHHHHHHHHHHHHhcccCcC-ccHHHHHHHHHHHhCcChh-hEEECCCHHHHHHHHHHHh-CCCC-EEEeCCCcH
Confidence 4567888899988764332222222 2368999999999998764 5999999999999888875 6775 677777655
Q ss_pred hHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCCCc
Q 017726 96 SLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPA 170 (367)
Q Consensus 96 ~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~ 170 (367)
.+ ...++..|.+++.++.+.+ +.+| +++++.+. +++|+|++++|+||||.+++ +++|.++|++ +++
T Consensus 106 ~~--~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~----~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~--~~~ 176 (356)
T PRK08056 106 EY--RRALQQVGCEIRRYSLREADGWQLT-DAILEALT----PDLDCLFLCTPNNPTGLLPERQLLQAIAERCKS--LNI 176 (356)
T ss_pred HH--HHHHHHcCCeEEEEecccccCCCcc-HHHHHhcc----CCCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHh--cCC
Confidence 43 3567889999999998643 3444 35555554 47799999999999999998 6778888888 999
Q ss_pred EEEEeeeeccCcee----ec-cccccceEEEecCCCcccCCCc--ceeeeeC-HHHHHHhccCCCCceeechHHHHHHhh
Q 017726 171 LFLVDGVSSICAID----FR-MDEWGIDVALTGSQKALSLPTG--MGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYN 242 (367)
Q Consensus 171 ~vi~D~~~~~~~~~----~~-~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (367)
+||+|++|...... .+ ......++++.|+||+++ .+| +|+++++ +++++++....
T Consensus 177 ~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~v~~~~~~~~~l~~~~---------------- 239 (356)
T PRK08056 177 ALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYA-IPGLRLGYLVNSDDAAVARMRRQQ---------------- 239 (356)
T ss_pred EEEEecchhccCCcchHHHHHhccCCCEEEEEechhhcc-CcchhheeeecCCHHHHHHHHHhC----------------
Confidence 99999997543211 11 222346799999999995 444 6999984 56666665321
Q ss_pred cCCccCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCCHH
Q 017726 243 LGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSS 320 (367)
Q Consensus 243 ~~~~~~~~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (367)
. +++.+.....+...++ .... .++.+++++++++.+.+.|+++ ++.+..+ .+++++++++. +..
T Consensus 240 -~---~~~~~~~~~~~a~~~l---~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~-----~~~~~~~~~~~--~~~ 305 (356)
T PRK08056 240 -M---PWSINAFAALAGEVIL---QDRAYQQATWQWLAEEGARFYQALCALPLLTVWPG-----RANYLFLRCER--PDI 305 (356)
T ss_pred -C---CCchhHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCC-----CCcEEEEEcCC--ChH
Confidence 0 2234443323333333 2211 5566788899999999999887 7665543 34567787752 457
Q ss_pred HHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 321 EIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 321 ~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
++++.|.+ +||.+++|... ..++++||++ +..++.+.+.++|.+
T Consensus 306 ~~~~~l~~-~gI~v~~~~~f~~~~~~~iRis~-~~~~~~~~l~~~l~~ 351 (356)
T PRK08056 306 DLQRALLT-QRILIRSCANYPGLDSRYYRVAI-RSAAENERLLAALRN 351 (356)
T ss_pred HHHHHHHH-CCeEEEECCCCCCCCCCEEEEEE-cCHHHHHHHHHHHHH
Confidence 89999975 59999988543 2346899995 455666666666654
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-29 Score=228.37 Aligned_cols=315 Identities=16% Similarity=0.106 Sum_probs=220.0
Q ss_pred CCCCChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCC
Q 017726 16 GPVHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIG 93 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~ 93 (367)
.+.+.++.+.+++.+.... ...|.......++|+.+++++|.++. ++++++|+++++..++.+++.+||.|++++|.
T Consensus 38 ~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~-~v~~~~g~t~al~~~~~~~~~~gd~vl~~~p~ 116 (380)
T PRK06225 38 NHLGPHEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDLGLDDD-EALITAGATESLYLVMRAFLSPGDNAVTPDPG 116 (380)
T ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhcCCCCC-cEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 3446678888888775432 12333345578999999999998765 59999999999999999989999999999997
Q ss_pred cchHHHHHHHHHhCCceEEEeCCC---CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcC
Q 017726 94 QFSLLWIDQQQRLNFNVDVVESDW---GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR 167 (367)
Q Consensus 94 ~~~~~~~~~~~~~g~~~~~v~~~~---~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~ 167 (367)
|+.. ...++..|.+++.++++. ++.+|+++++++++ ++++++++++|+||||.+++ +++|.++|++
T Consensus 117 y~~~--~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~----~~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~-- 188 (380)
T PRK06225 117 YLII--DNFASRFGAEVIEVPIYSEECNYKLTPELVKENMD----ENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARD-- 188 (380)
T ss_pred Ccch--HHHHHHhCceEEeeccccccCCccCCHHHHHhhcC----CCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHH--
Confidence 7653 355678899999998742 35789999999987 46799999999999999886 7778888888
Q ss_pred CCcEEEEeeeeccCc---eeeccccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhh
Q 017726 168 HPALFLVDGVSSICA---IDFRMDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYN 242 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~---~~~~~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (367)
+|+++|+|+++.... ...........+++.|++|++ |++| +|++++++++++.+.....
T Consensus 189 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~SK~~-g~~G~RiG~i~~~~~l~~~~~~~~~--------------- 252 (380)
T PRK06225 189 NDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKIF-GMAGLRIGAVVATPDLIEVVKSIVI--------------- 252 (380)
T ss_pred CCcEEEEehhHHHHhccCCchhhcCCCCEEEEeechhhc-CCccceeEEEecCHHHHHHHHHHHh---------------
Confidence 999999999874211 111101124568888999999 5556 6999999999887664210
Q ss_pred cCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccc-cCCCccCCCceEEEEcCC-CCCH
Q 017726 243 LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNC-TQKEEWFSDTVTAVIVPS-HINS 319 (367)
Q Consensus 243 ~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~-~~~~ 319 (367)
+ .+..+.....+...++....+. ++++++.++++.+.+.+.|+++ |+.+. .+ ..+.++++.++. +.+.
T Consensus 253 -~---~~~~~~~~~~~a~~~l~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~ 323 (380)
T PRK06225 253 -N---DLGTNVIAQEAAIAGLKVKDEW-IDRIRRTTFKNQKLIKEAVDEIEGVFLPVYP----SHGNMMVIDISEAGIDP 323 (380)
T ss_pred -c---ccCCCHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHHHhCcCCccccCC----CCCeEEEEEcccccCCH
Confidence 1 1123333333333344332222 4566677778888899999885 64332 22 234467787743 4678
Q ss_pred HHHHHHHHhhCCeEEccCCCC---CCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 320 SEIVRRAWQRYNLSLGLGLNK---VAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 320 ~~l~~~L~~~~gv~v~~g~~~---~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
.++.+.|. ++||.+++|... ...+++|+++....++.+...+.|.
T Consensus 324 ~~l~~~l~-~~gi~v~~g~~~~~~~~~~~iR~s~~~~~e~l~~~~~~l~ 371 (380)
T PRK06225 324 EDLVEYLL-ERKIFVRQGTYTSKRFGDRYIRVSFSIPREQVEVFCEEFP 371 (380)
T ss_pred HHHHHHHH-HCCEEEcCCcccCcCCCCceEEEEeCCCHHHHHHHHHHHH
Confidence 89999997 559999998432 1235799997654344444444443
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=230.64 Aligned_cols=300 Identities=15% Similarity=0.104 Sum_probs=208.7
Q ss_pred hHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHH----hcCC--CCceEEecCChhHHHHHHHHccCCCCCeEEEEeCC
Q 017726 21 PDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKI----FKTT--SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIG 93 (367)
Q Consensus 21 ~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~----~~~~--~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~ 93 (367)
++.+++++.+.... ...|.......++|+.++++ +|.+ ++++|++|+|+++++..++.+++.+||+|++..|.
T Consensus 39 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~ 118 (387)
T PRK07777 39 PPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPY 118 (387)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 44556655543221 22233234455677777665 5654 32359999999999999999889999999999997
Q ss_pred cchHHHHHHHHHhCCceEEEeCCCC---CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcC
Q 017726 94 QFSLLWIDQQQRLNFNVDVVESDWG---EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR 167 (367)
Q Consensus 94 ~~~~~~~~~~~~~g~~~~~v~~~~~---~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~ 167 (367)
|..+ ...++..|.+++.++.+++ +.+|++++++++. +++++|++++|+||||.+++ +++|.++|++
T Consensus 119 y~~~--~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~-- 190 (387)
T PRK07777 119 YDSY--AAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVT----PRTRALIVNSPHNPTGTVLTAAELAAIAELAVE-- 190 (387)
T ss_pred chhh--HHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcC----cccEEEEEcCCCCCCCccCCHHHHHHHHHHHHh--
Confidence 6654 3556778999999988653 4689999999887 46799999999999999986 7778899999
Q ss_pred CCcEEEEeeeeccCce------eec-cc-cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHH
Q 017726 168 HPALFLVDGVSSICAI------DFR-MD-EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDY 237 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~------~~~-~~-~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (367)
+++++|+|++|..... ++. .. ..+.++++.|+||.++ .+| +|++++++++++.+......
T Consensus 191 ~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~GlRiG~~~~~~~l~~~~~~~~~~--------- 260 (387)
T PRK07777 191 HDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFN-VTGWKIGWACGPAPLIAAVRAAKQY--------- 260 (387)
T ss_pred cCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhcc-CcCceeEEEecCHHHHHHHHHHHhh---------
Confidence 9999999999864321 111 11 1246899999999995 445 69999999988776532110
Q ss_pred HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC--
Q 017726 238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS-- 315 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-- 315 (367)
. .+..+.....++..++....+. ++++++.+.++++.+.+.|++.|+++..+ .+++++|++++.
T Consensus 261 ------~---~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~----~g~~~~~~~~~~~~ 326 (387)
T PRK07777 261 ------L---TYVGGAPFQPAVAHALDHEDAW-VAALRDSLQAKRDRLAAGLAEAGFEVHDS----AGTYFLCADPRPLG 326 (387)
T ss_pred ------c---ccCCCCHHHHHHHHHHhCCcHH-HHHHHHHHHHHHHHHHHHHHhCCCCccCC----CcceEEEecccccC
Confidence 0 1112222222333333221111 56778889999999999999988777765 456677777632
Q ss_pred CCCHHHHHHHHHhhCCeEEccCCCCC-----CCcEEEEeecC
Q 017726 316 HINSSEIVRRAWQRYNLSLGLGLNKV-----AGKVFRIGHLG 352 (367)
Q Consensus 316 ~~~~~~l~~~L~~~~gv~v~~g~~~~-----~~~~iRi~~~~ 352 (367)
..+..++++.|.+++||.+.+|..+. ...++||++..
T Consensus 327 ~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~ 368 (387)
T PRK07777 327 YDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCK 368 (387)
T ss_pred CCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecC
Confidence 23678999999877899999984321 13579999754
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-29 Score=224.84 Aligned_cols=326 Identities=14% Similarity=0.117 Sum_probs=232.1
Q ss_pred CCCCCCCcccccCCCCCChHHHHHHHccCCCCCCC----CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHH
Q 017726 3 YMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRS----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT 78 (367)
Q Consensus 3 ~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~ 78 (367)
|.++-++.|+-.+.++.+-+.+.+++.+....+.+ ....+..+++++.++++++.+. .+++++|++++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~---~iv~~sg~~a~~~~~~ 79 (349)
T cd06454 3 VLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKEA---ALVFSSGYAANDGVLS 79 (349)
T ss_pred ceecccCCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCCCC---EEEeccHHHHHHHHHH
Confidence 45566777777777766666666666543322222 1345778899999999999753 4556777889988888
Q ss_pred ccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccC-CCCccEEEEEecCCCccccccHH
Q 017726 79 NTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT-AHTIKAICIVHNETATGVTNNLS 157 (367)
Q Consensus 79 ~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~-~~~~~lv~~~~~~n~tG~~~~~~ 157 (367)
+++.+||.|+++.+.|++.. ..++..|++++.++. +|.+++++++++.. .++++++++++++||||.+.|++
T Consensus 80 ~~~~~gd~Vl~~~~~~~~~~--~~~~~~g~~~~~~~~-----~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~ 152 (349)
T cd06454 80 TLAGKGDLIISDSLNHASII--DGIRLSGAKKRIFKH-----NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLP 152 (349)
T ss_pred HhcCCCCEEEEehhhhHHHH--HHHHHcCCceEEecC-----CCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCHH
Confidence 88899999999988776643 345678998887753 47888998887531 13578999999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEeeeeccCcee--------eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCc
Q 017726 158 KVRKLLDEYRHPALFLVDGVSSICAID--------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR 229 (367)
Q Consensus 158 ~i~~~~~~~~~~~~vi~D~~~~~~~~~--------~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~ 229 (367)
+|.++|++ +|+++|+|++|+.+... .+....+.|++++|+||+++ ++| |+++.++++.+++......
T Consensus 153 ~i~~~~~~--~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~g-G~i~~~~~~~~~~~~~~~~- 227 (349)
T cd06454 153 ELVDLAKK--YGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFG-AVG-GYIAGSKELIDYLRSYARG- 227 (349)
T ss_pred HHHHHHHH--cCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhc-ccC-CEEECCHHHHHHHHHhchh-
Confidence 99999999 99999999999865442 12233468999999999995 565 8888898887766532110
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceE
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVT 309 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~ 309 (367)
+.. .++.+...++++.++++.+.+ .+.+++++.++++++.+.|+++|+++..+ ..+.+.
T Consensus 228 -----------~~~----~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~l~~~g~~~~~~----~~~~~~ 286 (349)
T cd06454 228 -----------FIF----STSLPPAVAAAALAALEVLQG--GPERRERLQENVRYLRRGLKELGFPVGGS----PSHIIP 286 (349)
T ss_pred -----------hhc----cCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhcCCcccCC----CCCcEE
Confidence 000 113555666777778877655 46678899999999999999988776654 233344
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCeEEccCCCC---CCCcEEEEeecCCCCHHH--HHHhhhh
Q 017726 310 AVIVPSHINSSEIVRRAWQRYNLSLGLGLNK---VAGKVFRIGHLGHLNEVM--FNFQLLF 365 (367)
Q Consensus 310 ~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~---~~~~~iRi~~~~~~~~~~--~~~~~l~ 365 (367)
++..+++.+..++.+.|.++ ||.+.++... ..+.++|+++....+.++ ....+|+
T Consensus 287 ~~~~~~~~~~~~~~~~L~~~-gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 346 (349)
T cd06454 287 PLIGDDPAKAVAFSDALLER-GIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALK 346 (349)
T ss_pred EEeCCChHHHHHHHHHHHhC-CceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHH
Confidence 45444345678899999876 9999864221 124689999876666544 4444443
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-29 Score=228.84 Aligned_cols=300 Identities=15% Similarity=0.122 Sum_probs=211.9
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cC--CCCceEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KT--TSGTPFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~--~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
+.++.+.+++.+.... ...|.......++|+.+++++ |. +++.+|++|+|+++|+.+++.+++.+||.|+++.
T Consensus 41 ~~~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~Vl~~~ 120 (387)
T PRK07683 41 PTPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPA 120 (387)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEcC
Confidence 3456667777664432 223333345678888888887 33 3332699999999999999999899999999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcC
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR 167 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~ 167 (367)
|.|..+. ..++..|++++.++.+. ++.+|.+++++.++ ++++++++++|+||||.+++ +++|.++|++
T Consensus 121 p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~-- 192 (387)
T PRK07683 121 PIYPGYE--PIIRLCGAKPVFIDTRSTGFRLTAEALENAIT----EKTRCVVLPYPSNPTGVTLSKEELQDIADVLKD-- 192 (387)
T ss_pred CCccchH--HHHHHcCCEEEEeecCcccCCCCHHHHHHhcC----cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHH--
Confidence 9766543 44677899999999864 45678899999887 46799999999999999986 6778888888
Q ss_pred CCcEEEEeeeeccCcee---eccc----cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHH
Q 017726 168 HPALFLVDGVSSICAID---FRMD----EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYI 238 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~---~~~~----~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (367)
+|+++|+|++|...... .+.. ..+..+++.|++|.++ .+| +|++++++++++++.....
T Consensus 193 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~-~pGlRiG~i~~~~~l~~~~~~~~~----------- 260 (387)
T PRK07683 193 KNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHS-MTGWRIGFLFAPSYLAKHILKVHQ----------- 260 (387)
T ss_pred cCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeecccccc-CccceeEEEEcCHHHHHHHHHHHH-----------
Confidence 99999999998754321 1111 1235688999999995 344 6999999998887764210
Q ss_pred HHhhcCCccCCCCcHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC-
Q 017726 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFE--EGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS- 315 (367)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~al~~al~~~~~--~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~- 315 (367)
+. ...++.. ++.++...+.+ ..+++.++++.++++.+.+.|++.|+.+..+ .++++++..++.
T Consensus 261 --~~-----~~~~~~~---~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~ 326 (387)
T PRK07683 261 --YN-----VTCASSI---SQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLISMGLDVEKP----TGAFYLFPSIGHF 326 (387)
T ss_pred --hc-----cCCCChH---HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcCCcccCC----CeeEEEEEecccC
Confidence 00 1112222 22333333322 1156677888899999999998888777665 455566666653
Q ss_pred CCCHHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeecC
Q 017726 316 HINSSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHLG 352 (367)
Q Consensus 316 ~~~~~~l~~~L~~~~gv~v~~g~~--~~~~~~iRi~~~~ 352 (367)
+.+..++++.+.+++||.+.+|.. ...++++||++..
T Consensus 327 ~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~ 365 (387)
T PRK07683 327 TMSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAY 365 (387)
T ss_pred CCCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecC
Confidence 456778887766777999999854 3335789999754
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-29 Score=225.23 Aligned_cols=304 Identities=13% Similarity=0.046 Sum_probs=213.9
Q ss_pred CCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcc
Q 017726 16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF 95 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~ 95 (367)
.|.++|+.+++++.+.......|.......++|+.++++++++++ +|++|+|+++++.+++. +.+| .+++..|.|.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~~-~I~it~Ga~~al~~~~~--l~~~-~viv~~P~y~ 107 (349)
T PRK07908 32 RHDTPPEWLRERLAARLGDLAAYPSTEDERRARAAVAARHGRTPD-EVLLLAGAAEGFALLAR--LRPR-RAAVVHPSFT 107 (349)
T ss_pred CCCCCCHHHHHHHHHHhhHhhcCCCccchHHHHHHHHHHhCcChh-hEEECCCHHHHHHHHHh--cCCC-eEEEeCCCCh
Confidence 345678888888887544333343335577899999999998764 59999999999998887 5665 5666777655
Q ss_pred hHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEe
Q 017726 96 SLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD 175 (367)
Q Consensus 96 ~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D 175 (367)
.. + ..++..|.+++.++++.++.+|++.+ + ++++++++++|+||||.+++.++|.++|+ +++++|+|
T Consensus 108 ~~-~-~~~~~~G~~i~~v~~~~~~~~d~~~l----~----~~~~~i~l~np~NPTG~~~~~~~l~~l~~---~~~~iIvD 174 (349)
T PRK07908 108 EP-E-AALRAAGIPVHRVVLDPPFRLDPAAV----P----DDADLVVIGNPTNPTSVLHPAEQLLALRR---PGRILVVD 174 (349)
T ss_pred HH-H-HHHHHcCCEEEeeccCcccCcChhHh----c----cCCCEEEEcCCCCCCCCCcCHHHHHHHHh---cCCEEEEE
Confidence 43 3 56778999999999987677888754 3 36789999999999999999999999985 46788889
Q ss_pred eeeccCc--eeeccc--cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCC
Q 017726 176 GVSSICA--IDFRMD--EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPY 249 (367)
Q Consensus 176 ~~~~~~~--~~~~~~--~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (367)
++|+... ...++. ..+..+++.|+||.++ ++| +|++++++++++++..... .+
T Consensus 175 e~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~~~-l~GlRiG~~~~~~~~~~~~~~~~~--------------------~~ 233 (349)
T PRK07908 175 EAFADAVPGEPESLAGDDLPGVLVLRSLTKTWS-LAGLRVGYALGAPDVLARLTRGRA--------------------HW 233 (349)
T ss_pred CcchhhccCCccccccccCCCEEEEeecccccC-CccceeeeeecCHHHHHHHHhcCC--------------------CC
Confidence 9986321 111211 1234577779999884 444 6999999999888765321 11
Q ss_pred CCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhh
Q 017726 250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQR 329 (367)
Q Consensus 250 ~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 329 (367)
..+.....++.+.+.......++++++++.++++++.+.|+++|+++..+ ..+.++++++++ .+++.+.|. +
T Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p----~~g~~~~~~~~~---~~~~~~~l~-~ 305 (349)
T PRK07908 234 PVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAVGARVVDP----AAAPFVLVRVPD---AELLRKRLR-E 305 (349)
T ss_pred CccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhCCcEeccC----CCceEEEEECCc---HHHHHHHHH-h
Confidence 23333333333332210111156778889999999999999888777665 356678888853 567777775 5
Q ss_pred CCeEEccCCCC--CCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 330 YNLSLGLGLNK--VAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 330 ~gv~v~~g~~~--~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
+||.+.+|... ...++|||++ +..++.+.+.+.|++
T Consensus 306 ~gI~v~~g~~f~~~~~~~vRis~-~~~~~~~~l~~al~~ 343 (349)
T PRK07908 306 RGIAVRRGDTFPGLDPDYLRLAV-RPRAEVPVLVQALAE 343 (349)
T ss_pred CCEEEEECCCCCCCCCCeEEEEe-CCCccHHHHHHHHHH
Confidence 69999998543 2357899997 566667777766654
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-29 Score=228.27 Aligned_cols=301 Identities=13% Similarity=0.069 Sum_probs=213.4
Q ss_pred ChHHHHHHHccCCCC-CCCC----cHHHHHHHHHHHHHHHhcCCC--CceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 20 IPDQVIRAMNRNNED-YRSP----AVPALTKTLLEDIKKIFKTTS--GTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~-~~~~----~~~~~~~~~~~~la~~~~~~~--~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
.++.+.+++.+.... ...| +.....+.+.+.+.+.++.+. ++++++|+|+++++..++.+++.+||+|++..|
T Consensus 44 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p 123 (386)
T PRK09082 44 GPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDP 123 (386)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 356667766653221 1122 233444555555555667642 235999999999999999998999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc---cHHHHHHHHHhcCC
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN---NLSKVRKLLDEYRH 168 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~---~~~~i~~~~~~~~~ 168 (367)
.|.+.. ..++..|.+++.++.+. ++.+|+++++++++ ++++++++++|+||||.++ ++++|.++|++ +
T Consensus 124 ~y~~~~--~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~--~ 195 (386)
T PRK09082 124 SYDSYA--PAIELAGGRAVRVALQPPDFRVDWQRFAAAIS----PRTRLIILNTPHNPSGTVWSAADMRALWQLIAG--T 195 (386)
T ss_pred CchhhH--HHHHHcCCEEEEEecCcccccCCHHHHHHhcC----ccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHH--C
Confidence 777643 45677899999999863 56789999999987 4679999999999999886 46778999999 9
Q ss_pred CcEEEEeeeeccCcee----e---cccc-ccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHH
Q 017726 169 PALFLVDGVSSICAID----F---RMDE-WGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYI 238 (367)
Q Consensus 169 ~~~vi~D~~~~~~~~~----~---~~~~-~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (367)
++++|+|++|...... . .... .+..+++.|+||.++ .+| +|++++++++++.+.....
T Consensus 196 ~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~iv~~~~l~~~~~~~~~----------- 263 (386)
T PRK09082 196 DIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYH-VTGWKVGYCVAPAALSAEFRKVHQ----------- 263 (386)
T ss_pred CEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhcc-chhhhhhhhhCCHHHHHHHHHHHh-----------
Confidence 9999999998643221 1 1111 245789999999984 444 6999999999887764311
Q ss_pred HHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC--C
Q 017726 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS--H 316 (367)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~--~ 316 (367)
. ..++++.....++...+... +.-++++++.++++++.+.+.|++.|+++..+ .++.++|+++++ +
T Consensus 264 -----~--~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~----~g~~~~~~~~~~~~~ 331 (386)
T PRK09082 264 -----Y--NTFTVNTPAQLALADYLRAE-PEHYLELPAFYQAKRDRFRAALANSRFKLLPC----EGTYFQLVDYSAISD 331 (386)
T ss_pred -----h--hcCCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC----CeeEEEEEeccccCC
Confidence 0 01224443333333333211 12266778888999999999999988877665 466778888863 5
Q ss_pred CCHHHHHHHHHhhCCeEEccCCCC----CCCcEEEEeecC
Q 017726 317 INSSEIVRRAWQRYNLSLGLGLNK----VAGKVFRIGHLG 352 (367)
Q Consensus 317 ~~~~~l~~~L~~~~gv~v~~g~~~----~~~~~iRi~~~~ 352 (367)
.+..++++.|.+++||.+.+|..+ ...+++||++..
T Consensus 332 ~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~ 371 (386)
T PRK09082 332 LDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAK 371 (386)
T ss_pred CCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecC
Confidence 678899999877889999998432 234689999754
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=229.40 Aligned_cols=313 Identities=13% Similarity=0.107 Sum_probs=219.1
Q ss_pred CcccccCC--CCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEe-cCChhHHHHHHHHccCCCCC
Q 017726 9 KNHLFVPG--PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLI-PTTGTGAWESALTNTLSPGD 85 (367)
Q Consensus 9 ~~~~~~~~--p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~-~~ggt~al~~~~~~~~~~gd 85 (367)
+.+.+.-+ |.++++.+++++.+.......|.. ....++|+.+++++++++++ +++ ++|+++++..++.+++.+||
T Consensus 35 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-~~~~~lr~~ia~~~~~~~~~-i~~~~~Ga~~~i~~~~~~~~~~gd 112 (361)
T PRK00950 35 SIIKLGSNENPLGPSPKAVEAIEKELSKIHRYPE-PDAPELREALSKYTGVPVEN-IIVGGDGMDEVIDTLMRTFIDPGD 112 (361)
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHhCCCHHH-EEEeCCCHHHHHHHHHHHhcCCCC
Confidence 34455433 456677788887764433222211 12378999999999987654 777 67777888888888889999
Q ss_pred eEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHh
Q 017726 86 RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDE 165 (367)
Q Consensus 86 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~ 165 (367)
.|+++.|.|... ...++..|++++.++.+.++.+|++++++.++ ++++++++++|+||||.++|.+++.++|++
T Consensus 113 ~vlv~~p~y~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~v~~~~p~nptG~~~~~~~l~~l~~~ 186 (361)
T PRK00950 113 EVIIPTPTFSYY--EISAKAHGAKPVYAKREEDFSLDVDSVLNAIT----EKTKVIFLCTPNNPTGNLIPEEDIRKILES 186 (361)
T ss_pred EEEEcCCChHHH--HHHHHHcCCEEEEeecCCCCCcCHHHHHHHhc----cCCCEEEEeCCCCCCCCCcCHHHHHHHHHH
Confidence 999999865543 34577889999999977777899999999886 467999999999999999999999999999
Q ss_pred cCCCcEEEEeeeeccCce-ee-c-cccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHH
Q 017726 166 YRHPALFLVDGVSSICAI-DF-R-MDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~-~~-~-~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (367)
+|+++++|++|..... .. . ....+..+++.|++|.++ .+| +|++++++++++.+.....
T Consensus 187 --~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~~~~~~~~~~~~~~~~~------------- 250 (361)
T PRK00950 187 --TDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFG-LAGLRIGYGFVPEWLIDYYMRAKT------------- 250 (361)
T ss_pred --CCcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhhc-CchhhcchhcCCHHHHHHHHHhcC-------------
Confidence 8999999999964331 01 1 111234578889999984 555 6999999998877764311
Q ss_pred hhcCCccCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCH
Q 017726 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINS 319 (367)
Q Consensus 241 ~~~~~~~~~~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (367)
++..+.. ++..+...+.+.+ +++.+++.+++++++.+.|. +.+..+ .+.++++++ ++.+.
T Consensus 251 -------~~~~~~~---~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~l~---~~~~~~-----~~~~i~~~~-~~~~~ 311 (361)
T PRK00950 251 -------PFSLTRL---SQAAAIAALSDKEYIEKSIEHGIKSREYLYNELP---FKVYPS-----EANFVLVDV-TPMTA 311 (361)
T ss_pred -------CCCCCHH---HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcC---eeECCC-----cceEEEEEC-CCCCH
Confidence 1223332 2333344443333 56666667777777766654 444332 345778888 56688
Q ss_pred HHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 320 SEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 320 ~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
.++++.|.+ +||.+++|... ..+.++|+++. ..++.+...++|++
T Consensus 312 ~~~~~~l~~-~gv~v~~~~~f~~~~~~~lRis~~-~~~~~~~l~~~L~~ 358 (361)
T PRK00950 312 KEFCEELLK-RGVIVRDCTSFRGLGDYYIRVSIG-TFEENERFLEILKE 358 (361)
T ss_pred HHHHHHHHH-CCEEEeeCCccCCCCCCeEEEECC-CHHHHHHHHHHHHH
Confidence 999999975 59999987542 23468999965 44556666666654
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-29 Score=228.61 Aligned_cols=302 Identities=16% Similarity=0.065 Sum_probs=212.4
Q ss_pred CChHHHHHHHccCCC--CCCCCcHHHHHHHHHHHHHHHhc----CC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 19 HIPDQVIRAMNRNNE--DYRSPAVPALTKTLLEDIKKIFK----TT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~--~~~~~~~~~~~~~~~~~la~~~~----~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
+.++.+.+++.+... ....|.......++|+.++++++ .. .+++|++|+|+++++..++.+++.+||+|+++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~ 121 (386)
T PRK07550 42 PPPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILPL 121 (386)
T ss_pred CCCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhcCCCCEEEEcC
Confidence 346667777665321 12223322445677777777664 32 335699999999999999999899999999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhc
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEY 166 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~ 166 (367)
|.|+... ..++..|.+++.++.++ ++.+|+++++++++ +++++|++++|+||||.+++ +++|.++|++
T Consensus 122 p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~----~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~- 194 (386)
T PRK07550 122 PWYFNHK--MWLDMLGIRPVYLPCDEGPGLLPDPAAAEALIT----PRTRAIALVTPNNPTGVVYPPELLHELYDLARR- 194 (386)
T ss_pred CCCcchH--HHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhc----ccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHH-
Confidence 9776643 45678999999999864 34679999999997 46799999999999999987 6778899998
Q ss_pred CCCcEEEEeeeeccCce----eecc-c---cccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeechHHH
Q 017726 167 RHPALFLVDGVSSICAI----DFRM-D---EWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDY 237 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~----~~~~-~---~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (367)
+|++||+|++|+.... +... . .....+++.|++|.++ ...++|++++++++++++......
T Consensus 195 -~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~--------- 264 (386)
T PRK07550 195 -HGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPARIAEIEKFMDT--------- 264 (386)
T ss_pred -cCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecCHHHHHHHHHHHhh---------
Confidence 9999999999864321 1111 0 1123577899999985 223479999999888776642110
Q ss_pred HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCC-
Q 017726 238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS- 315 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~- 315 (367)
. ...++.....++..++..+.+. +++.++.+.++++.+.+.|++. ++.+.. ..++++|++++.
T Consensus 265 ------~---~~~~s~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-----~g~~~~~~~~~~~ 329 (386)
T PRK07550 265 ------V---AICAPRIGQIAVAWGLPNLADW-RAGNRAEIARRRDAFRAVFARLPGWELLA-----SGAYFAYVRHPFP 329 (386)
T ss_pred ------c---ccCCCcHHHHHHHHHhccHHHH-HHHHHHHHHHHHHHHHHHHHhCCCceeCC-----CceEEEEecCCCC
Confidence 0 1123343334444455443332 5666778888999999999986 655432 355678888865
Q ss_pred CCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecC
Q 017726 316 HINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLG 352 (367)
Q Consensus 316 ~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~ 352 (367)
+.+..+++++|.+++||.+.+|..+ ..+.++||++..
T Consensus 330 ~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~ 368 (386)
T PRK07550 330 DRPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFAN 368 (386)
T ss_pred CCCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeec
Confidence 6788999999877789999998433 235689999754
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-29 Score=229.53 Aligned_cols=307 Identities=14% Similarity=0.086 Sum_probs=209.4
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhc----CC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFK----TT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~----~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
++++.+.+++.+.... ...|.......++|+.++++++ .. ++++|++|+|+++++..++.+++++||.|+++.|
T Consensus 46 ~p~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vl~~~p 125 (398)
T PRK08363 46 QPPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGP 125 (398)
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 5677788887764322 2233334556788888888873 22 3356999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEE-eCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcC
Q 017726 93 GQFSLLWIDQQQRLNFNVDVV-ESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR 167 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v-~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~ 167 (367)
.|.... ..++..|.+++.+ +.++ ++.+|+++++++++ ++++++++++|+||||.+++ +++|.++|++
T Consensus 126 ~y~~~~--~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~----~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~-- 197 (398)
T PRK08363 126 SYPPYT--GLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKIT----EKTKAIAVINPNNPTGALYEKKTLKEILDIAGE-- 197 (398)
T ss_pred CCcchH--HHHHHcCCEEEEeccccccCCcCCHHHHHhhCC----cceEEEEEECCCCCCCcCcCHHHHHHHHHHHHH--
Confidence 877653 4567788888877 4443 35689999999887 46799999999999999997 7788888988
Q ss_pred CCcEEEEeeeeccCcee------eccccccceEEEecCCCccc-CCCcceeeee--CHHHHHHhccCCCCceeechHHHH
Q 017726 168 HPALFLVDGVSSICAID------FRMDEWGIDVALTGSQKALS-LPTGMGIVCA--SPKALEASKTAKSVRVFFDWKDYI 238 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~------~~~~~~~~d~~~~s~~K~~~-g~~g~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 238 (367)
+|+++|+|++|...... .........+++.|+||.+. .+.++|++++ ++++++.+.....
T Consensus 198 ~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~----------- 266 (398)
T PRK08363 198 HDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAID----------- 266 (398)
T ss_pred cCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCccceEEEEEEeCcHHHHHHHHHHHH-----------
Confidence 99999999998743221 01111123577889999963 2344799997 6666655542210
Q ss_pred HHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCC-
Q 017726 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSH- 316 (367)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~- 316 (367)
.+... .+.++.....++..++... ..-+++.++++.++++.+.+.|+++ ++.+..+ .+++++|++++..
T Consensus 267 -~~~~~---~~~~s~~~q~~~~~~l~~~-~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p----~g~~~~~~~l~~~~ 337 (398)
T PRK08363 267 -KLARI---RLCPNTPAQFAAIAGLTGP-MDYLEEYMKKLKERRDYIYKRLNEIPGISTTKP----QGAFYIFPRIEEGP 337 (398)
T ss_pred -HHhcc---cccCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHhcCCCCEecCC----CeEEEEEEEeccCC
Confidence 00000 1123333333334344321 1226677888999999999999887 7776555 4666666677542
Q ss_pred -CCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCC
Q 017726 317 -INSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGH 353 (367)
Q Consensus 317 -~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~ 353 (367)
.+..+++..+.+++||.+.+|..+ ..++++||++...
T Consensus 338 ~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~ 377 (398)
T PRK08363 338 WKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLPP 377 (398)
T ss_pred CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCC
Confidence 245677666656779999998543 2346899997543
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-29 Score=229.18 Aligned_cols=303 Identities=12% Similarity=0.024 Sum_probs=210.6
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
+.++.+.+++.+.... ...|.......++|+.+++++ |.. .+++|++|+|+++++..++.+++++||+|++++|
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p 122 (388)
T PRK07337 43 TAPEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDP 122 (388)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhcCCCCEEEEeCC
Confidence 3466777777664322 223333344667888888876 432 3356999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcC
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR 167 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~ 167 (367)
.|+++. ..++..|.+++.++.+. ++.+|++++++.++ +++++|++++|+||||.+++ +++|.++|++
T Consensus 123 ~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~-- 194 (388)
T PRK07337 123 SYPCNR--HFVAAAEGRPVLVPSGPAERFQLTAADVEAAWG----ERTRGVLLASPSNPTGTSIAPDELRRIVEAVRA-- 194 (388)
T ss_pred CchhhH--HHHHHcCCEEEEeecCCccCCcCCHHHHHhhcC----ccceEEEEECCCCCCCcCcCHHHHHHHHHHHHH--
Confidence 887754 44567899999999864 35789999999887 46799999999999999997 5667888888
Q ss_pred CCcEEEEeeeeccCcee---eccccccc-eEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHh
Q 017726 168 HPALFLVDGVSSICAID---FRMDEWGI-DVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFY 241 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~---~~~~~~~~-d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (367)
+++++++|++|...... ......+. -+++.|+||.++ .+| +|++++++++++++......
T Consensus 195 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~-~~G~RiG~~~~~~~l~~~l~~~~~~------------- 260 (388)
T PRK07337 195 RGGFTIVDEIYQGLSYDAAPVSALSLGDDVITINSFSKYFN-MTGWRLGWLVVPEALVGTFEKLAQN------------- 260 (388)
T ss_pred CCCEEEEeccccccccCCCCcChhhccCCEEEEEechhhcC-CchhheeeeecCHHHHHHHHHHHHH-------------
Confidence 99999999998643221 11111222 356789999984 444 79999999988877643110
Q ss_pred hcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCcc-ccCCCccCCCceEEEEcCC-----
Q 017726 242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKN-CTQKEEWFSDTVTAVIVPS----- 315 (367)
Q Consensus 242 ~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~----- 315 (367)
. ....+.....++..++..-....+++.++.++++++++.+.|++.|+.+ ..+ .++.++|++++.
T Consensus 261 --~---~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p----~~g~f~~~~~~~~~~~~ 331 (388)
T PRK07337 261 --L---FICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESLGFKVPVMP----DGAFYVYADCRGVAHPA 331 (388)
T ss_pred --h---ccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhcCCccccCC----CeeEEEEEecccccCCC
Confidence 0 1112332222323233210001156677888889999999999987654 233 466788888853
Q ss_pred CCCHHHHHHHHHhhCCeEEccCCCCC---CCcEEEEeecC
Q 017726 316 HINSSEIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLG 352 (367)
Q Consensus 316 ~~~~~~l~~~L~~~~gv~v~~g~~~~---~~~~iRi~~~~ 352 (367)
..+..++++++.+++||.+.+|..+. ..+++||++..
T Consensus 332 ~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~ 371 (388)
T PRK07337 332 AGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYAT 371 (388)
T ss_pred CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecC
Confidence 24677899887777799999885432 24689999764
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=223.57 Aligned_cols=307 Identities=14% Similarity=0.065 Sum_probs=213.2
Q ss_pred CCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcc
Q 017726 16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF 95 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~ 95 (367)
.|.++|+.+.+++.+.......|.... ..++|+.++++++++++ +|++|+|+++++.+++.++ .+||.|+++.|.|.
T Consensus 32 n~~~~~~~~~~a~~~~~~~~~~Y~~~~-~~~Lr~aia~~~~v~~~-~I~it~G~~~~i~~~~~~l-~~g~~vlv~~P~y~ 108 (360)
T PRK07392 32 NPLGPPESVIAAIQSALSALRHYPDPD-YRELRLALAQHHQLPPE-WILPGNGAAELLTWAGREL-AQLRAVYLITPAFG 108 (360)
T ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCcC-HHHHHHHHHHHhCcChh-hEEECCCHHHHHHHHHHHh-CCCCeEEEECCCcH
Confidence 456678888888876433222232222 46899999999998775 5999999999999988875 47889999999776
Q ss_pred hHHHHHHHHHhCCceEEEeCCCCCC-----CCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCc
Q 017726 96 SLLWIDQQQRLNFNVDVVESDWGEG-----AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPA 170 (367)
Q Consensus 96 ~~~~~~~~~~~g~~~~~v~~~~~~~-----~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~ 170 (367)
.+ ...++..|.+++.++.+.++. .+++++++.. ++++++++++||||||.+++.++|.+++++ +++
T Consensus 109 ~~--~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~nP~NPTG~~~~~~~l~~l~~~--~~~ 179 (360)
T PRK07392 109 DY--RRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-----TPNDGLLLNNPHNPTGKLWSREAILPLLEQ--FAL 179 (360)
T ss_pred HH--HHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-----cCCCEEEEeCCCCCCCCCcCHHHHHHHHHH--CCE
Confidence 64 356778999999999875543 3455554432 357999999999999999999999999998 775
Q ss_pred EEEEeeeeccCceee---c----cccccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhh
Q 017726 171 LFLVDGVSSICAIDF---R----MDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYN 242 (367)
Q Consensus 171 ~vi~D~~~~~~~~~~---~----~~~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (367)
+|+|++|....... + ......-+++.|+||.++ ...++|++++++++++++.....
T Consensus 180 -~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~~~~~~~~~~--------------- 243 (360)
T PRK07392 180 -VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPDRLQRWQQWRD--------------- 243 (360)
T ss_pred -EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCHHHHHHHHhhCC---------------
Confidence 66699986543210 1 111234688999999995 33447999999998887753211
Q ss_pred cCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCCHHH
Q 017726 243 LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSE 321 (367)
Q Consensus 243 ~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (367)
.++.+.....++.++++. .+. .++.++.++++++.+.+.|+++ |+.+..+ .+++++++++. +..+
T Consensus 244 -----~~~~s~~~q~~~~~~l~~-~~~-~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~-----~~~fl~~~~~~--~~~~ 309 (360)
T PRK07392 244 -----PWPVNGLAAAAAIAALAD-RDF-QQQTWAWLPPAREALFQGLASLPGLTPLPS-----AANFLLVQSQG--SALQ 309 (360)
T ss_pred -----CCCCCHHHHHHHHHHhcc-HHH-HHHHHHHHHHHHHHHHHHHHhCCCcEECCC-----CCCEEEEEcCC--CHHH
Confidence 233555444444444432 111 3445667788899999999887 7766442 34567777742 6778
Q ss_pred HHHHHHhhCCeEEccCCCCC--CCcEEEEeecCCCCHHHHHHhhhh
Q 017726 322 IVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 322 l~~~L~~~~gv~v~~g~~~~--~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
+.+.+.+++||.+.+|.... ..+++||++ +..++.+.+.+.|+
T Consensus 310 l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~-~~~~~~~~l~~al~ 354 (360)
T PRK07392 310 LQEKLLQQHRILIRDCLSFPELGDRYFRVAV-RTEAENQRLLEALA 354 (360)
T ss_pred HHHHHHhhCCEEEEeCCCCCCCCCCEEEEEe-CCHHHHHHHHHHHH
Confidence 99887677799999986542 346899995 44444455555544
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=229.10 Aligned_cols=306 Identities=12% Similarity=0.022 Sum_probs=209.2
Q ss_pred CChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhcC----C-CCceEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 19 HIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKT----T-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~----~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
.+++.+.+++.+.... ...|.......++|+.++++++. + ++++|++|+|+++++..++.++++|||.|++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~pGd~Vlv~~ 162 (462)
T PLN02187 83 RTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLARPNANILLPR 162 (462)
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhcCCCCEEEEeC
Confidence 3456667766654322 22343345677899999998852 1 335699999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhc
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEY 166 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~ 166 (367)
|.|+.+. ..++..|.+++.++.. .++.+|+++++++++ ++++++++++|+||||.+++ +++|.++|++
T Consensus 163 P~y~~y~--~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~----~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~- 235 (462)
T PLN02187 163 PGFPHYD--ARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIAD----ENTVAMVVINPNNPCGNVYSHDHLKKVAETARK- 235 (462)
T ss_pred CCCccHH--HHHHHcCCEEEEEeCccccCCccCHHHHHHhcC----CCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHH-
Confidence 9887643 4567889999999874 357899999999887 46799999999999999997 6678888888
Q ss_pred CCCcEEEEeeeeccCce---ee-cc---ccccceEEEecCCCcccCCCc--ceeeeeC-HH-H---HHHhccCCCCceee
Q 017726 167 RHPALFLVDGVSSICAI---DF-RM---DEWGIDVALTGSQKALSLPTG--MGIVCAS-PK-A---LEASKTAKSVRVFF 232 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~---~~-~~---~~~~~d~~~~s~~K~~~g~~g--~g~~~~~-~~-~---~~~~~~~~~~~~~~ 232 (367)
+|++||+|++|..... ++ +. ......+++.|++|.+. .+| +|++++. ++ . ++.+.....
T Consensus 236 -~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~-~pGlRiG~~v~~~p~~~~~~~~~~~~~~~----- 308 (462)
T PLN02187 236 -LGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWV-VPGWKIGWIALNDPEGVFETTKVLQSIKQ----- 308 (462)
T ss_pred -CCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcC-CccceeEEEEecCchhHHHHHHHHHHHHH-----
Confidence 9999999999875322 11 11 11123588899999974 555 6999973 33 2 223322110
Q ss_pred chHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcC-Ccc-ccCCCccCCCceEE
Q 017726 233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG-LKN-CTQKEEWFSDTVTA 310 (367)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g-~~~-~~~~~~~~~~~~~~ 310 (367)
.+.. ...++.....++.+++....+.-+++.++.+.++++.+.+.|++.+ +.. ..| .++++++
T Consensus 309 -------~~~~----~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P----~gg~fl~ 373 (462)
T PLN02187 309 -------NLDV----TPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKP----ESCTYLL 373 (462)
T ss_pred -------hccc----cCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCC----CEeEEEE
Confidence 0000 0123444444444444321111267788889999999999999874 322 233 3556777
Q ss_pred EEcCC----CC-CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCC
Q 017726 311 VIVPS----HI-NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH 353 (367)
Q Consensus 311 ~~~~~----~~-~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~ 353 (367)
++++. +. +..++++.+.++.||.+.+|..+...++|||++...
T Consensus 374 ~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~~~~ 421 (462)
T PLN02187 374 TKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRITIGVE 421 (462)
T ss_pred eecChhhCCCCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEEeCCC
Confidence 76632 22 456787777677799999986554567899997543
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-28 Score=222.92 Aligned_cols=318 Identities=9% Similarity=0.056 Sum_probs=225.4
Q ss_pred CCCChHHHHHHHccCCCC-----CCCCcHHHHHHHHHHHHHHHhcCCCC-ceEEe--cCChhHHHHHHHHccC-------
Q 017726 17 PVHIPDQVIRAMNRNNED-----YRSPAVPALTKTLLEDIKKIFKTTSG-TPFLI--PTTGTGAWESALTNTL------- 81 (367)
Q Consensus 17 p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~la~~~~~~~~-~~v~~--~~ggt~al~~~~~~~~------- 81 (367)
.+++.+.+.+.+.+.... ...+......+++++++++++|.+++ +++.+ |+|||+|++.++.+..
T Consensus 50 tt~~~p~~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~ 129 (431)
T TIGR01788 50 TTWMEPEARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRM 129 (431)
T ss_pred CCCCCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHH
Confidence 556666677776664331 22334457888999999999999832 23444 8999999998875432
Q ss_pred -CC-----CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc
Q 017726 82 -SP-----GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN 154 (367)
Q Consensus 82 -~~-----gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~ 154 (367)
.. +..|+++..+|++ +.+.++..|++++.++++++ +.+|+++|+++|++ ++.+|++++.+|.+|.+.
T Consensus 130 ~~~g~~~~~~~ii~s~~~H~s--v~ka~~~lg~~v~~i~~d~~~~~vd~~~L~~~i~~----~t~lV~~t~g~t~tG~id 203 (431)
T TIGR01788 130 EAAGKPTDKPNLVMGSNVQVC--WEKFARYFDVELREVPMDPGRYVIDPEQVVEAVDE----NTIGVVCILGTTYTGEYE 203 (431)
T ss_pred HhcCCCCCCcEEEEcCcchHH--HHHHHHHcCceeEEEecCCCceeeCHHHHHHHHhh----CCeEEEEEeCCCCCcccC
Confidence 11 2368888888877 44777888999999999875 58999999999984 568999999999999999
Q ss_pred cHHHHHHHHHhcCC------CcEEEEeeeeccCc-------eeeccccccceEEEecCCCcccCCCcceeeeeCHHH--H
Q 017726 155 NLSKVRKLLDEYRH------PALFLVDGVSSICA-------IDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKA--L 219 (367)
Q Consensus 155 ~~~~i~~~~~~~~~------~~~vi~D~~~~~~~-------~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~--~ 219 (367)
|+++|.++|++ + |+++++|++++.+. .+.++...++|.++.|+|||+.+|.|+|+++++++. .
T Consensus 204 pi~~I~~i~~~--~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~ 281 (431)
T TIGR01788 204 DVKALNDALDE--YNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALP 281 (431)
T ss_pred CHHHHHHHHHH--HHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCCcEEEEEeChHHcc
Confidence 99999999999 7 89999999999443 344445557899999999999889999999988752 1
Q ss_pred HHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCcccc
Q 017726 220 EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCT 298 (367)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 298 (367)
+.+.. ...+...... +.+ ..++.+....++.+..+..+...|++++.++..++++++.+.|++. +++++.
T Consensus 282 ~~~~~---~~~yl~~~~~----~~t--~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~ 352 (431)
T TIGR01788 282 EELIF---HVNYLGGDEP----TFT--LNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIIS 352 (431)
T ss_pred hhhee---cccccCCCCC----Ccc--eecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEee
Confidence 22211 0111110000 000 1112333344567777777888899999999999999999999998 688886
Q ss_pred CCCccCCCceEEEEcCC----CCCHHHHHHHHHhhCCeEEccCCCC--CCC-cEEEEeecCCCC
Q 017726 299 QKEEWFSDTVTAVIVPS----HINSSEIVRRAWQRYNLSLGLGLNK--VAG-KVFRIGHLGHLN 355 (367)
Q Consensus 299 ~~~~~~~~~~~~~~~~~----~~~~~~l~~~L~~~~gv~v~~g~~~--~~~-~~iRi~~~~~~~ 355 (367)
+.+ ...+++|+... +.+..++.+.|.++ |+.+.....+ ..+ .++|+++....+
T Consensus 353 ~~~---~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~~p~~~~~~~~lR~~~~~~~~ 412 (431)
T TIGR01788 353 DGS---GIPLVAFKLKDDADPGYTLYDLSHRLRER-GWIVPAYTLPKNAEDIVVMRIVVREGFS 412 (431)
T ss_pred CCC---CceEEEEEeCCCCCCCcCHHHHHHHHHHC-CCcccCCCCCCccCCeEEEEEEecCCCC
Confidence 521 34578898842 35677899999754 8865432222 222 358998865444
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=227.80 Aligned_cols=303 Identities=13% Similarity=0.053 Sum_probs=213.6
Q ss_pred CChHHHHHHHccCCCCC--CCCcHHHHHHHHHHHHHHHhcCC-----CCceEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 19 HIPDQVIRAMNRNNEDY--RSPAVPALTKTLLEDIKKIFKTT-----SGTPFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~-----~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
++++.+.+++.+..... ..|.......++|+.++++++.. .++++++|+|+++++.+++.+++.+||+|+++.
T Consensus 48 ~~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~ 127 (403)
T TIGR01265 48 RTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANPGANILVPR 127 (403)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhCCCCCEEEEeC
Confidence 56788888887754321 23333455778999999999852 345699999999999999999889999999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhc
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEY 166 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~ 166 (367)
|+|... ...++..|++++.++.+. ++.+|++++++++. ++++++++++|+||||.+++ +++|.++|++
T Consensus 128 p~y~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~- 200 (403)
T TIGR01265 128 PGFPLY--DTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALAD----EKTVAIVVINPSNPCGSVFSRDHLQKIAEVARK- 200 (403)
T ss_pred CCchhH--HHHHHHcCCEEEEecCCcccCCccCHHHHHHHhC----cCccEEEEecCCCCCCCCCCHHHHHHHHHHHHH-
Confidence 976653 355778899999988753 45789999999887 46799999999999999986 7788889998
Q ss_pred CCCcEEEEeeeeccCcee----ec---cccccceEEEecCCCcccCC-CcceeeeeC-H-H-----HHHHhccCCCCcee
Q 017726 167 RHPALFLVDGVSSICAID----FR---MDEWGIDVALTGSQKALSLP-TGMGIVCAS-P-K-----ALEASKTAKSVRVF 231 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~~----~~---~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~-~-~-----~~~~~~~~~~~~~~ 231 (367)
+|+++|+|++|...... .. +.....-+++.|+||.+..| .++|+++++ + + +++.+...
T Consensus 201 -~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~------ 273 (403)
T TIGR01265 201 -LGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNL------ 273 (403)
T ss_pred -CCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCcceEEEEEEeCchhhhHHHHHHHHHHH------
Confidence 99999999998754321 11 11112357888999986422 337999874 2 2 22222211
Q ss_pred echHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEE
Q 017726 232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTA 310 (367)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~ 310 (367)
. .. ...++.....++..++....+.-+++.++++.++++.+.+.|+.+ |+.+..+ .+++++|
T Consensus 274 ----------~-~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p----~~g~f~~ 336 (403)
T TIGR01265 274 ----------L-QR--ILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKDIPGLVCPKP----EGAMYLM 336 (403)
T ss_pred ----------h-hh--hcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCC----CceeEEE
Confidence 0 00 112344333344444432111126677888899999999999887 7765554 4667888
Q ss_pred EEcCCC-----CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC
Q 017726 311 VIVPSH-----INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352 (367)
Q Consensus 311 ~~~~~~-----~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~ 352 (367)
++++++ .+..++++.|.+++||.+.+|..+..++++||++..
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~~ 383 (403)
T TIGR01265 337 VKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITITV 383 (403)
T ss_pred EeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEecC
Confidence 888543 267789888777779999998655456789999754
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=225.50 Aligned_cols=309 Identities=14% Similarity=0.056 Sum_probs=213.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEecCChh-HHHHHHHHccCCC--CCeEEEEeCCcchHH--HHHHHHHhCCceEEEe
Q 017726 40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGT-GAWESALTNTLSP--GDRIISFLIGQFSLL--WIDQQQRLNFNVDVVE 114 (367)
Q Consensus 40 ~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt-~al~~~~~~~~~~--gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~ 114 (367)
..+..+++++.+++++|.+.++ +++++||+ ++...+..+.+.+ ||.|+++++.|.++. +....+..|.+++.++
T Consensus 62 ~~~~~~~~~~~la~~~g~~~~~-v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~ 140 (398)
T cd00613 62 RLQALFELQTMLCELTGMDVAN-ASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVP 140 (398)
T ss_pred HHHHHHHHHHHHHHHHCCCccc-eeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEec
Confidence 3466788999999999987544 66666555 4444444455555 999999999777764 2222223348999999
Q ss_pred CCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccH-HHHHHHHHhcCCCcEEEEeeeeccCceeeccccccce
Q 017726 115 SDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL-SKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGID 193 (367)
Q Consensus 115 ~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~-~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d 193 (367)
.+.++.+|++++++++. +++++|++++++ ++|.+.|. ++|.++|++ +|+++|+|++|+.+....+....++|
T Consensus 141 ~~~~~~~d~~~l~~~i~----~~t~~viv~~~~-~~G~~~~~l~~i~~la~~--~g~~livD~~~~~~~~~~~~~~~~~d 213 (398)
T cd00613 141 SDEGGTVDLEALKEEVS----EEVAALMVQYPN-TLGVFEDLIKEIADIAHS--AGALVYVDGDNLNLTGLKPPGEYGAD 213 (398)
T ss_pred cCCCCCcCHHHHHHhcC----CCeEEEEEECCC-CCceecchHHHHHHHHHh--cCCEEEEEeccccccCCCChHHcCCC
Confidence 87777889999999987 467999999985 89999985 999999999 99999999998766655555566899
Q ss_pred EEEecCCCcccCC-----CcceeeeeCHHHHHHhccCCC---------CceeechHH--HHHHhhcCCccCCCCcHHHHH
Q 017726 194 VALTGSQKALSLP-----TGMGIVCASPKALEASKTAKS---------VRVFFDWKD--YIKFYNLGTFWPYTPSIQLLY 257 (367)
Q Consensus 194 ~~~~s~~K~~~g~-----~g~g~~~~~~~~~~~~~~~~~---------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 257 (367)
++++|+||++ +| +|+|++++++++++.+..... ..+.+++.. ...+++.++...++.+.....
T Consensus 214 ~~~~s~~K~~-~p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~ 292 (398)
T cd00613 214 IVVGNLQKTG-VPHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLAL 292 (398)
T ss_pred EEEeeccccC-CCCCCCCCceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHH
Confidence 9999999998 44 557899999988876533211 111111110 112233343223344444444
Q ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC--CCCHHHHHHHHHhhCCeEEc
Q 017726 258 GLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS--HINSSEIVRRAWQRYNLSLG 335 (367)
Q Consensus 258 al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~~gv~v~ 335 (367)
+...++..+.+.|+++++++..++++++.+.|++++.... +... .. ..++++++. +.+..++++.|.++ ||.+.
T Consensus 293 ~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~-~~-~~v~~~~~~~~~~~~~~~~~~L~~~-gi~~~ 368 (398)
T cd00613 293 MAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGVLP-FNGP-FF-HEFVLRLPPLYGIRAEDLAKALIDG-GFHAP 368 (398)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-CCCC-ee-EEEEEEcCCcchHHHHHHHHhhhhc-Ccccc
Confidence 5555566666778889999999999999999999854332 2111 12 235677743 34577899999755 88764
Q ss_pred cCCCCCCCcEEEEeecCCCCHHHHHHh
Q 017726 336 LGLNKVAGKVFRIGHLGHLNEVMFNFQ 362 (367)
Q Consensus 336 ~g~~~~~~~~iRi~~~~~~~~~~~~~~ 362 (367)
... +..+..+|++++.+++.+|++..
T Consensus 369 ~~~-~~~~~~lRis~~~~~t~edid~~ 394 (398)
T cd00613 369 TMY-LPVDGTLMIEPTETETKEELDAL 394 (398)
T ss_pred ccc-cCCCCeEEEEcCCCCCHHHHHHH
Confidence 322 22346799999999988877653
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=226.14 Aligned_cols=306 Identities=15% Similarity=0.092 Sum_probs=202.2
Q ss_pred CChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHh------cCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 19 HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIF------KTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
+.++.+.+++.+.......|.......++|+.+++++ ++++ ++|++++|+++++..++.+++.+||+|++++|
T Consensus 49 ~~~~~i~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~-~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p 127 (404)
T PRK09265 49 EAPDEILRDVIRNLPTAQGYSDSKGLFSARKAIMQYYQQKGIPDVDV-DDIYIGNGVSELIVMAMQALLNNGDEVLVPAP 127 (404)
T ss_pred CCCHHHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHhccCCCCCCc-ccEEEeCChHHHHHHHHHHhCCCCCEEEEeCC
Confidence 4677788887764333233433345568999999998 4554 45999999999999999998999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcC
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR 167 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~ 167 (367)
.|.... ..++..|.+++.++.+. ++.+|++++++++. +++++|++++|+||||.+++ +++|.++|++
T Consensus 128 ~y~~~~--~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~----~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~-- 199 (404)
T PRK09265 128 DYPLWT--AAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKIT----PRTKAIVIINPNNPTGAVYSKELLEEIVEIARQ-- 199 (404)
T ss_pred CCcChH--HHHHHcCCEEEEEecccccCCCCCHHHHHHhcc----ccceEEEEECCCCCCCcCCCHHHHHHHHHHHHH--
Confidence 887643 45667888888887653 35689999999886 46799999999999999998 7888889998
Q ss_pred CCcEEEEeeeeccCcee----ec---cccccceEEEecCCCcccCCCc--ceeeee--CHHHHHHhccCCCCceeechHH
Q 017726 168 HPALFLVDGVSSICAID----FR---MDEWGIDVALTGSQKALSLPTG--MGIVCA--SPKALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~----~~---~~~~~~d~~~~s~~K~~~g~~g--~g~~~~--~~~~~~~~~~~~~~~~~~~~~~ 236 (367)
+|++||+|++|...... .+ .......+++.|++|.++ .+| +|+++. +++..+.+....
T Consensus 200 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~-~pGlRiG~~v~~~~~~~~~~~~~~~---------- 268 (404)
T PRK09265 200 HNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYR-VAGFRVGWMVLSGPKKHAKGYIEGL---------- 268 (404)
T ss_pred CCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhcc-CcccceEEEEEeCchHHHHHHHHHH----------
Confidence 99999999998643211 11 111123467789999984 444 699986 333222111000
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcC
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~ 314 (367)
...... .+.++.....++..++...... .+.+..+++.++++.+.+.|+++ |+.+..+ .+++++|++++
T Consensus 269 --~~~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p----~~g~~l~~~~~ 339 (404)
T PRK09265 269 --DMLASM---RLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAIPGVSCVKP----KGALYAFPKLD 339 (404)
T ss_pred --HHHhcc---ccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCC----CcceEEEEEec
Confidence 000000 1123333334444444321111 01112245677788899999887 7776666 46677888875
Q ss_pred CCC----CHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCC
Q 017726 315 SHI----NSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGH 353 (367)
Q Consensus 315 ~~~----~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~ 353 (367)
... +..++...+.+++||.+.+|..+ ..++++|+++...
T Consensus 340 ~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~~~ 384 (404)
T PRK09265 340 PKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTLPR 384 (404)
T ss_pred ccccCCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeCCC
Confidence 421 34444444446679999998543 2357899998433
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=224.08 Aligned_cols=306 Identities=15% Similarity=0.105 Sum_probs=217.4
Q ss_pred CCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcch
Q 017726 17 PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFS 96 (367)
Q Consensus 17 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~ 96 (367)
+.++++.+.+++.+.......|. .....++|+.++++++++++ +|++++|+++++..++..++.+||.|+++.|.|..
T Consensus 33 ~~~~~~~~~~a~~~~~~~~~~y~-~~g~~~lr~~ia~~~~~~~~-~I~~~~G~~~~l~~~~~~~~~~gd~Vli~~p~y~~ 110 (352)
T PRK03321 33 PFGPLPSVRAAIARAAAGVNRYP-DMGAVELRAALAEHLGVPPE-HVAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEA 110 (352)
T ss_pred CCCCCHHHHHHHHHHHHhcCcCC-CCcHHHHHHHHHHHhCcCHH-HEEECCCHHHHHHHHHHHhcCCCCEEEeCCCCHHH
Confidence 44567788888877543222221 24578999999999997654 59999999999998888888999999999886654
Q ss_pred HHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEee
Q 017726 97 LLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDG 176 (367)
Q Consensus 97 ~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~ 176 (367)
+ ...++..|.+++.++.++++.+|+++++++++ ++++++++++|+||||.++|.+++.++|+..++++++++|+
T Consensus 111 ~--~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~----~~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De 184 (352)
T PRK03321 111 Y--PILVQVAGATPVQVPLTPDHTHDLDAMAAAIT----DRTRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDE 184 (352)
T ss_pred H--HHHHHHcCCEEEEccCCCCCCCCHHHHHHhhc----cCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEec
Confidence 3 24567789999999988667889999999987 46799999999999999999999999998754699999999
Q ss_pred eeccCcee------ecc-ccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCcc
Q 017726 177 VSSICAID------FRM-DEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFW 247 (367)
Q Consensus 177 ~~~~~~~~------~~~-~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (367)
+|...... +.. ......+++.|++|.++ .+| +|++++++++++.+.... .
T Consensus 185 ~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~~v~~~~~~~~~~~~~-----------------~--- 243 (352)
T PRK03321 185 AYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYG-LAGLRVGYAVGHPEVIAALRKVA-----------------V--- 243 (352)
T ss_pred hHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhh-hHHHhhhhhcCCHHHHHHHHHhc-----------------C---
Confidence 98643221 111 11134588889999984 444 799999999988876421 0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHH
Q 017726 248 PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAW 327 (367)
Q Consensus 248 ~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 327 (367)
.++.+.....+..+++..... ..+..++..+.++.+.+.|++.|+.+..+ .+.+++++++ .+..++++.|.
T Consensus 244 ~~~~s~~~q~~a~~~l~~~~~--~~~~~~~~~~~r~~~~~~L~~~~~~~~~~-----~g~~i~i~l~--~~~~~~~~~l~ 314 (352)
T PRK03321 244 PFSVNSLAQAAAIASLAAEDE--LLERVDAVVAERDRVRAALRAAGWTVPPS-----QANFVWLPLG--ERTADFAAAAA 314 (352)
T ss_pred CCCCCHHHHHHHHHHhcCHHH--HHHHHHHHHHHHHHHHHHHHHCCCccCCC-----CCCEEEEeCC--CCHHHHHHHHH
Confidence 223455443444444432222 33444555566778888998887665332 3456777763 35778999985
Q ss_pred hhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 328 QRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 328 ~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
++||.+.+ + .+..+||++ +..++.+.+..+|++
T Consensus 315 -~~gI~v~~-~---~~~~iRi~~-~~~~~~~~~~~al~~ 347 (352)
T PRK03321 315 -EAGVVVRP-F---AGEGVRVTI-GAPEENDAFLRAARA 347 (352)
T ss_pred -HCCEEEEc-c---CCCcEEEee-CCHHHHHHHHHHHHH
Confidence 56999986 2 234699995 555556665555543
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-29 Score=226.88 Aligned_cols=311 Identities=20% Similarity=0.171 Sum_probs=225.4
Q ss_pred CChHHHHHHHcc---CCCCCCCCcHHHHHHHHHHHHHHHhc------CCCCceEEecCChhHHHHHHHHcc-CCCCCeEE
Q 017726 19 HIPDQVIRAMNR---NNEDYRSPAVPALTKTLLEDIKKIFK------TTSGTPFLIPTTGTGAWESALTNT-LSPGDRII 88 (367)
Q Consensus 19 ~~~~~v~~a~~~---~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl 88 (367)
+.++++++++.+ .......|.......++|+.++++++ .+++.++++++|+.+++..++..+ ..+|+.|+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~~~~~~~vl 97 (363)
T PF00155_consen 18 PPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLKINPGDTVL 97 (363)
T ss_dssp HHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHHSSTTSEEE
T ss_pred cchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhcccccccccce
Confidence 356667777665 22223345445678899999999999 555435888887778888878777 78999999
Q ss_pred EEeCCcchHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhccCCC--CccEEEEEecCCCccccccHHHHHHH--
Q 017726 89 SFLIGQFSLLWIDQQQRLNFNVDVVESD--WGEGAKLDVLASKLAADTAH--TIKAICIVHNETATGVTNNLSKVRKL-- 162 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~e~l~~~i~~~~~~--~~~lv~~~~~~n~tG~~~~~~~i~~~-- 162 (367)
++.|.|+... ..++..|++++.++++ .++.+|++++++.+++...+ +++++++++|+||||..++.+++.++
T Consensus 98 v~~P~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~ 175 (363)
T PF00155_consen 98 VPDPCYPSYI--EAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAE 175 (363)
T ss_dssp EEESSSTHHH--HHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHH
T ss_pred ecCCcccccc--ccccccCceeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhh
Confidence 9999887753 6678899999999864 56788999999999963212 46899999999999999986665555
Q ss_pred -HHhcCCCcEEEEeeeeccCcee--------eccccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCcee
Q 017726 163 -LDEYRHPALFLVDGVSSICAID--------FRMDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVF 231 (367)
Q Consensus 163 -~~~~~~~~~vi~D~~~~~~~~~--------~~~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~ 231 (367)
|++ +|+++++|++|...... .........+++.|++|.++ .+| +|++++++++++.+....
T Consensus 176 ~~~~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~GlRvG~i~~~~~~~~~l~~~~----- 247 (363)
T PF00155_consen 176 LARE--YNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFG-LPGLRVGYIVAPPELIERLRRFQ----- 247 (363)
T ss_dssp HHHH--TTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTT-SGGGTEEEEEEEHHHHHHHHHHH-----
T ss_pred hhcc--cccceeeeeceeccccCCCccCcccccccccccceeeeecccccc-ccccccccccchhhhhhhhhhcc-----
Confidence 888 99999999999865443 11122223599999999984 555 699999999888776421
Q ss_pred echHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceE
Q 017726 232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE--GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVT 309 (367)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~--g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~ 309 (367)
... ..+.....++..++...... -+++++++++++++++.+.|++.|+.+..+ .++.++
T Consensus 248 ----------~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~----~~~~~~ 308 (363)
T PF00155_consen 248 ----------RSG-----LSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEIGITVLPP----EAGFFL 308 (363)
T ss_dssp ----------HHT-----TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEHH----SBSSEE
T ss_pred ----------ccc-----cccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHhhhheeec----cCccEE
Confidence 111 12333333344444433321 267889999999999999999999888886 466677
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 310 AVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 310 ~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
++..+.. +..+++++|.+++||.+.+|..+...+++||++ +..+.+++.
T Consensus 309 ~~~~~~~-~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~-a~~~~e~~~ 357 (363)
T PF00155_consen 309 WVRLDPN-DAEELAQELLEEYGILVRPGSYFGVPGYIRISL-ASHSEEDLE 357 (363)
T ss_dssp EEEESHH-HHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEG-GCSCHHHHH
T ss_pred EEEcccc-hHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEe-ccCCHHHHH
Confidence 7777322 568999999988899999987665578899998 555554443
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=223.71 Aligned_cols=307 Identities=15% Similarity=0.092 Sum_probs=218.6
Q ss_pred CCCCChHHHHHHHccCCC----C-CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCCCCC
Q 017726 16 GPVHIPDQVIRAMNRNNE----D-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGD 85 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~----~-~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd 85 (367)
.|.++|+.+.+++.+... . .+++. ....++|+.+++++ |.+ .+++|++|+|+++++..++.+++++||
T Consensus 36 ~~~~~~~~~~~al~~~l~~~~~~~~~Y~~--~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd 113 (368)
T PRK03317 36 NPYPPSPALVADIAEAVAEAAAGLNRYPD--RDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFGGPGR 113 (368)
T ss_pred CCCCCCHHHHHHHHHHHhhhhhhhccCCC--CchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHhcCCCC
Confidence 356778888888876432 1 22232 24578899999988 432 334699999999999999999999999
Q ss_pred eEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHh
Q 017726 86 RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDE 165 (367)
Q Consensus 86 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~ 165 (367)
.|++..|.|..+. ..++..|.+++.++.+.++.+|++++++++++ ++++++++++|+||||.+++.+++.++++.
T Consensus 114 ~v~v~~P~y~~~~--~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~ 188 (368)
T PRK03317 114 TALGFVPSYSMHP--IIARGTHTEWVEGPRAADFTLDVDAAVAAIAE---HRPDVVFLTSPNNPTGTALPLDDVEAILDA 188 (368)
T ss_pred EEEEeCCChHHHH--HHHHhcCCeeEEcccCCCCCCCHHHHHHHHhc---cCCCEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence 9999999776643 45677899988888776788999999999874 367899999999999999999999999998
Q ss_pred cCCCcEEEEeeeeccCcee-----ecc-ccccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeechHHHH
Q 017726 166 YRHPALFLVDGVSSICAID-----FRM-DEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYI 238 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~-----~~~-~~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (367)
.++++|+|++|...... ... ......+++.|++|.++ ....+|++++++++++.+.....
T Consensus 189 --~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~~~~~~l~~~~~----------- 255 (368)
T PRK03317 189 --APGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAPAVVDALRLVRL----------- 255 (368)
T ss_pred --CCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCHHHHHHHHhcCC-----------
Confidence 78999999998754211 111 11123578889999985 22336999999999888764311
Q ss_pred HHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCC
Q 017726 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHIN 318 (367)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (367)
++..+.....+..++++.... +.+.++++.++++.+.+.|++.|+.+..+ .++++++... .+
T Consensus 256 ---------~~~~s~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~~~~~~~~---~~ 317 (368)
T PRK03317 256 ---------PYHLSAVTQAAARAALRHADE--LLASVAALRAERDRVVAWLRELGLRVAPS----DANFVLFGRF---AD 317 (368)
T ss_pred ---------CCCCCHHHHHHHHHHhhCHHH--HHHHHHHHHHHHHHHHHHHHHCCCEeCCC----CCcEEEEecc---CC
Confidence 223444444444555543222 34455667888889999999888876655 3443443333 25
Q ss_pred HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 319 SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 319 ~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
..++.+.|.+ +||.+.+.. .++++||++. ..++.+.+.++|+
T Consensus 318 ~~~~~~~l~~-~Gv~v~~~~---~~~~iRi~~~-~~~~~~~~~~~l~ 359 (368)
T PRK03317 318 RHAVWQGLLD-RGVLIRDVG---IPGWLRVTIG-TPEENDAFLAALA 359 (368)
T ss_pred HHHHHHHHHH-CCEEEEeCC---CCCeEEEecC-CHHHHHHHHHHHH
Confidence 6788888875 599998632 2468999964 4455556665554
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-28 Score=220.91 Aligned_cols=285 Identities=13% Similarity=0.093 Sum_probs=204.7
Q ss_pred HHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCC-CeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC---CC
Q 017726 44 TKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPG-DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW---GE 119 (367)
Q Consensus 44 ~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~g-d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~---~~ 119 (367)
..++|+.++++++++++ +|++++|+++++..++.+++.+| +.|++++|.| +. +...++..|.+++.++.+. ++
T Consensus 61 ~~~lr~~ia~~~~~~~~-~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~y-~~-~~~~~~~~g~~~~~v~~~~~~~~~ 137 (364)
T PRK04781 61 PPGLRSALAALYGCAPE-QLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVF-GM-YAVCARLQNAPLVEVPLVDGADGF 137 (364)
T ss_pred HHHHHHHHHHHhCcChH-HEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCCh-HH-HHHHHHHcCCEEEEEecCCCccCC
Confidence 47999999999998764 59999999999999999988888 7889888854 33 3345677899999999742 24
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceee---c-cccccceEE
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF---R-MDEWGIDVA 195 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~---~-~~~~~~d~~ 195 (367)
.+|++++++.+.. +++++|++++|+||||.++|.+++.++++...++++||+|++|....... . ......-++
T Consensus 138 ~~d~~~l~~~~~~---~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~~~~~vi~ 214 (364)
T PRK04781 138 HADVPAIVAAALA---SNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLARYDNLAV 214 (364)
T ss_pred CcCHHHHHHHHhc---cCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHhhCCCEEE
Confidence 5788888665532 47899999999999999999999999888744589999999987443211 1 112235688
Q ss_pred EecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh---Ch
Q 017726 196 LTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE---GL 271 (367)
Q Consensus 196 ~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~---g~ 271 (367)
+.|+||.++ ...++|++++++++++.+..... ++..+... +..+...+... -.
T Consensus 215 ~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~~~--------------------~~~~~~~~---~~~a~~~l~~~~~~~~ 271 (364)
T PRK04781 215 LRTLSKAHALAAARIGSLIANAELIAVLRRCQA--------------------PYPVPTPC---AALAEQALSAPALAVT 271 (364)
T ss_pred EecChhhcccccceeeeeeCCHHHHHHHHhccC--------------------CCCCCHHH---HHHHHHHHhcccHHHH
Confidence 999999985 23347999999999888875421 22233322 22333333322 13
Q ss_pred HHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCC-CCCCcEEEEe
Q 017726 272 ENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLN-KVAGKVFRIG 349 (367)
Q Consensus 272 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~-~~~~~~iRi~ 349 (367)
.+..+++.++++.+.+.|+++ |+....+ ..+.+++++++ +..++.+.|. ++||.++++.. +..++++||+
T Consensus 272 ~~~~~~~~~~r~~l~~~L~~~~~~~~~~p----~~g~f~~~~~~---~~~~~~~~l~-~~gI~v~~~~~~~~~~~~~Ris 343 (364)
T PRK04781 272 ARRVAEVRAERERLHAALAQLPGVRRVYP----SQGNFLLVRFD---DAEAAFQALL-AAGVVVRDQRAAPRLSDALRIT 343 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCeECC----CCCcEEEEEcC---CHHHHHHHHH-HCCeEEeeCCCCCCCCCeEEEe
Confidence 455567788899999999988 7643333 24557888875 4678888886 55999998753 2235689999
Q ss_pred ecCCCCHHHHHHhhhhc
Q 017726 350 HLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 350 ~~~~~~~~~~~~~~l~~ 366 (367)
+ +..++.+.+.++|++
T Consensus 344 ~-~~~~~~~~l~~al~~ 359 (364)
T PRK04781 344 L-GTPEQNDRVLAALQR 359 (364)
T ss_pred C-CCHHHHHHHHHHHHH
Confidence 4 666666777777664
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-28 Score=221.68 Aligned_cols=282 Identities=16% Similarity=0.118 Sum_probs=203.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 120 (367)
.+...++++.+++++|.+. +++++||++|+..++.+++++||.|++.++.|.+.. ..++..+.+...++ .
T Consensus 82 ~~~~~~le~~ia~~~g~~~---~ii~~~~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~--~~~~~~~~~~~~~~-----~ 151 (393)
T TIGR01822 82 QDIHKELEAKIAAFLGTED---TILYASCFDANGGLFETLLGAEDAIISDALNHASII--DGVRLCKAKRYRYA-----N 151 (393)
T ss_pred hHHHHHHHHHHHHHhCCCc---EEEECchHHHHHHHHHHhCCCCCEEEEeccccHHHH--HHHHhcCCceEEeC-----C
Confidence 5667899999999999753 455588899999999889999999999999888754 33455666554443 3
Q ss_pred CCHHHHHHHHhccCC--CCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceee---------cccc
Q 017726 121 AKLDVLASKLAADTA--HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF---------RMDE 189 (367)
Q Consensus 121 ~d~e~l~~~i~~~~~--~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~---------~~~~ 189 (367)
.|++++++++++... .++++|++.+++|+||.+.|+++|.++|++ +|+++++|++|+.+.... +..
T Consensus 152 ~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~--~~~~li~De~~~~g~~~~~~~~~~~~~~~~- 228 (393)
T TIGR01822 152 NDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADK--YDALVMVDECHATGFLGPTGRGSHELCGVM- 228 (393)
T ss_pred CCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHH--cCCEEEEECCccccCcCCCCCchHHhcCCC-
Confidence 689999999885311 277899999999999999999999999999 999999999997654321 111
Q ss_pred ccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh
Q 017726 190 WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE 269 (367)
Q Consensus 190 ~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~ 269 (367)
.++|++++|+||+++|+. .|++++++++++.+...... ... ..+.+...+.+..++++.+.
T Consensus 229 ~~~di~~~s~sK~l~g~r-~G~~~~~~~~~~~l~~~~~~-~~~---------------~~~~~~~~~~a~~~al~~~~-- 289 (393)
T TIGR01822 229 GRVDIITGTLGKALGGAS-GGFTTARKEVVELLRQRSRP-YLF---------------SNSLPPAVVGASIKVLEMLE-- 289 (393)
T ss_pred CCCeEEEEEChHHhhCCC-cEEEEeCHHHHHHHHHhCcc-cee---------------cCCCCHHHHHHHHHHHHHHh--
Confidence 257999999999997655 59999999998877642111 111 12344444455666676653
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC---CCCcEE
Q 017726 270 GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK---VAGKVF 346 (367)
Q Consensus 270 g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~---~~~~~i 346 (367)
+.+++++++.++++++.+.|++.|+.+..+ .. .++.+.+++..+..++++.|.++ ||.+.....+ .....+
T Consensus 290 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~-~~~~i~~~~~~~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~i 363 (393)
T TIGR01822 290 ASNELRDRLWANTRYFRERMEAAGFDIKPA----DH-PIIPVMLYDAVLAQRFARRLLEE-GIYVTGFFYPVVPKGQARI 363 (393)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHcCCCCCCC----CC-CEEEEEeCCHHHHHHHHHHHHHC-CeeEeeeCCCCCCCCCceE
Confidence 256788899999999999999888776543 12 24555554434567899999766 9998733222 122459
Q ss_pred EEeecCCCCHHHHH
Q 017726 347 RIGHLGHLNEVMFN 360 (367)
Q Consensus 347 Ri~~~~~~~~~~~~ 360 (367)
|+++....+.+|+.
T Consensus 364 Ris~~~~~t~edi~ 377 (393)
T TIGR01822 364 RVQISAAHTEEQLD 377 (393)
T ss_pred EEEECCCCCHHHHH
Confidence 99887766555443
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-28 Score=224.36 Aligned_cols=301 Identities=14% Similarity=0.110 Sum_probs=209.5
Q ss_pred hHHHHHHHccCCC--CCCCCcHHHHHHHHHHHHHHHh----cCC--CCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 21 PDQVIRAMNRNNE--DYRSPAVPALTKTLLEDIKKIF----KTT--SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 21 ~~~v~~a~~~~~~--~~~~~~~~~~~~~~~~~la~~~----~~~--~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
++.+.+++.+... ....|.......++|+.+++++ |.. +++++++|+|+++++..++..++.|||+|++++|
T Consensus 44 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P 123 (395)
T PRK08175 44 PPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNP 123 (395)
T ss_pred CHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCC
Confidence 4445666554321 1223433345567778777775 443 3335999999999999988888999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccH---HHHHHHHHhcCCC
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL---SKVRKLLDEYRHP 169 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~---~~i~~~~~~~~~~ 169 (367)
.|+... ..++..|+++..++.+.++. +.+++++++++.. ++++++++++|+||||.+++. ++|.++|++ +|
T Consensus 124 ~y~~~~--~~~~~~g~~~~~v~~~~~~~-~~~~l~~~l~~~~-~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~--~~ 197 (395)
T PRK08175 124 SYPIHI--YGAVIAGAQVRSVPLVEGVD-FFNELERAIRESY-PKPKMMILGFPSNPTAQCVELEFFEKVVALAKR--YD 197 (395)
T ss_pred CCcchH--HHHHHcCCeEEEEecccCCC-cHHHHHHHHhhcc-CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHH--cC
Confidence 877653 33567899999999875543 4788888887533 478999999999999999986 678888888 99
Q ss_pred cEEEEeeeeccCcee----ec---ccc-ccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHH
Q 017726 170 ALFLVDGVSSICAID----FR---MDE-WGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIK 239 (367)
Q Consensus 170 ~~vi~D~~~~~~~~~----~~---~~~-~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (367)
+++|+|+++...... .. ... .+..+++.|++|.++ .+| +|+++.++++++++.....
T Consensus 198 i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~pGlRiG~~~~~~~l~~~~~~~~~------------ 264 (395)
T PRK08175 198 VLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYN-MAGWRIGFMVGNPELVSALARIKS------------ 264 (395)
T ss_pred cEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeecccccc-CcchhheeeeCCHHHHHHHHHHHh------------
Confidence 999999998643211 11 111 134577899999994 444 6999999999887764211
Q ss_pred HhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCC--
Q 017726 240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI-- 317 (367)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~-- 317 (367)
. ..++.+.....+...++.... ..++++++.++++++++.+.|+++|+.+..+ .++.++++++++..
T Consensus 265 ----~--~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p----~~g~~i~i~l~~~~~~ 333 (395)
T PRK08175 265 ----Y--HDYGTFTPLQVAAIAALEGDQ-QCVRDIAEQYKRRRDVLVKGLHEAGWMVEMP----KASMYVWAKIPEPYAA 333 (395)
T ss_pred ----h--cccCCCcHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHHcCCcccCC----CEEEEEEEECCcccCC
Confidence 0 011122222223333333211 1267778888999999999999988776655 46678899987653
Q ss_pred -CHHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeec
Q 017726 318 -NSSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHL 351 (367)
Q Consensus 318 -~~~~l~~~L~~~~gv~v~~g~~--~~~~~~iRi~~~ 351 (367)
+..++++.|.+++||.+.+|.. ...++++||++.
T Consensus 334 ~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~ 370 (395)
T PRK08175 334 MGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALI 370 (395)
T ss_pred CCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeC
Confidence 4678988887778999999843 233468999974
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=228.80 Aligned_cols=333 Identities=15% Similarity=0.086 Sum_probs=237.2
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCCCC-----------CCcHHHHHH-HHHHHHHHHhcCCCCceEEec---CChhHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNEDYR-----------SPAVPALTK-TLLEDIKKIFKTTSGTPFLIP---TTGTGA 72 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~~~-----------~~~~~~~~~-~~~~~la~~~~~~~~~~v~~~---~ggt~a 72 (367)
.+.+.++|+-..+++.+++++........ +....+..+ ..|+.+++++|+++++ +.++ +||+++
T Consensus 34 ~~~l~l~~sen~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~-~~~~~~~~sgt~a 112 (452)
T PTZ00094 34 IEGLELIASENFTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEE-WGVNVQPYSGSPA 112 (452)
T ss_pred HcCeeEecccccCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCccc-ceeecCCCchHHH
Confidence 46778899999999999999998653221 112344455 4789999999997654 5555 789999
Q ss_pred HHHHHHccCCCCCeEEEEeCCcchHHHH--HHH------HHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEE
Q 017726 73 WESALTNTLSPGDRIISFLIGQFSLLWI--DQQ------QRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIV 144 (367)
Q Consensus 73 l~~~~~~~~~~gd~vl~~~~~~~~~~~~--~~~------~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~ 144 (367)
+..++.+++++||+|++...+|.+.... ... ...++++..++.+.++.+|++++++++++ .+++++++.
T Consensus 113 n~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~---~~~~lvi~~ 189 (452)
T PTZ00094 113 NFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKA---FRPKLIIAG 189 (452)
T ss_pred HHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHH---hCCCEEEEe
Confidence 9999999999999999988888775421 110 01123344555666688999999999974 356777654
Q ss_pred ecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeecccc---ccceEEEecCCCcccCCCcceeeeeCHHHHHH
Q 017726 145 HNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDE---WGIDVALTGSQKALSLPTGMGIVCASPKALEA 221 (367)
Q Consensus 145 ~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~---~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~ 221 (367)
++.+|...|+++|.++|++ +|+++++|++|++|..+.+... .++|++++|+|||+.||.| |+++++++..+.
T Consensus 190 --~s~~g~~~di~~I~~i~~~--~ga~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~GP~G-g~l~~~~~~~~~ 264 (452)
T PTZ00094 190 --ASAYPRDIDYKRFREICDS--VGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPRS-GLIFYRKKVKPD 264 (452)
T ss_pred --CCCCCCccCHHHHHHHHHH--cCCEEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCCCCc-eEEEEecccchH
Confidence 3469999999999999999 9999999999999987654321 2689999999999999998 888887765443
Q ss_pred hccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCC
Q 017726 222 SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKE 301 (367)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 301 (367)
+........+. + +.++++...++++.++++.+...+.+++.++..+++++|.+.|++.|+++..+..
T Consensus 265 l~~~~~~~~~p-----------~--~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~g~~v~~~~~ 331 (452)
T PTZ00094 265 IENKINEAVFP-----------G--LQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKRGYDLVTGGT 331 (452)
T ss_pred HHHhhccccCC-----------C--CCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhCCcEEecCCC
Confidence 33211111110 1 1235778888999999999987778888999999999999999888888876432
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEc-cCCCC----CCCcEEEEeecCCC------CHHHHHHhhhh
Q 017726 302 EWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLG-LGLNK----VAGKVFRIGHLGHL------NEVMFNFQLLF 365 (367)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~-~g~~~----~~~~~iRi~~~~~~------~~~~~~~~~l~ 365 (367)
..+ ..++.+.. .+.+..++.+.| +++||.+. ++... ..++.+|+|++... ++.+.+.++|.
T Consensus 332 ~~~-~~~v~~~~-~~~~~~~~~~~L-~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~ 403 (452)
T PTZ00094 332 DNH-LVLVDLRP-FGITGSKMEKLL-DAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLD 403 (452)
T ss_pred CCc-eEeecCCc-CCCCHHHHHHHH-HHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHH
Confidence 112 12233333 466777888888 55699994 44332 23467999985543 34455555554
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-28 Score=217.37 Aligned_cols=313 Identities=13% Similarity=0.100 Sum_probs=229.6
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCCC---------CCcHHHHHHHHHHHHHHHhcCCCCc-eEEecCChhHHHHHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDYR---------SPAVPALTKTLLEDIKKIFKTTSGT-PFLIPTTGTGAWESALT 78 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~---------~~~~~~~~~~~~~~la~~~~~~~~~-~v~~~~ggt~al~~~~~ 78 (367)
..++-+|--......+++++.++..... +....+..+++++++++++|.++++ +.+||+|||+|+..++.
T Consensus 24 ~~~~gy~~~~~~~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~ 103 (374)
T PLN03032 24 SVHFGYPYNLDFDYGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGIL 103 (374)
T ss_pred hhccCCCchhccChHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHH
Confidence 3445555555555556777766543211 1234677889999999999998654 25999999999998876
Q ss_pred ccC--CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccH
Q 017726 79 NTL--SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL 156 (367)
Q Consensus 79 ~~~--~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~ 156 (367)
+.. .++..|+++..+|+|.. +.++.+|.+++.||++.++.+|+++|+++|++++ .+|.+|+++..+|.+|.+.|+
T Consensus 104 ~ar~~~~~~~vi~s~~~H~Sv~--kaa~~lg~~~~~V~~d~~g~id~~~L~~~i~~~~-~~~~lvv~tagtt~tG~idpi 180 (374)
T PLN03032 104 VGREVFPDGILYASRESHYSVF--KAARMYRMEAVKVPTLPSGEIDYDDLERALAKNR-DKPAILNVNIGTTVKGAVDDL 180 (374)
T ss_pred HHHHhCCCcEEEeCCCceeHHH--HHHHHcCCCCeEeeeCCCCcCcHHHHHHHHHHcC-CCCEEEEEEecCcCCccCCCH
Confidence 532 34568888888888854 6688889999999999999999999999998654 367899999999999999999
Q ss_pred HHHHHHHHhcCCC-----cEEEEeeeeccCceee-------ccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhcc
Q 017726 157 SKVRKLLDEYRHP-----ALFLVDGVSSICAIDF-------RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKT 224 (367)
Q Consensus 157 ~~i~~~~~~~~~~-----~~vi~D~~~~~~~~~~-------~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~ 224 (367)
++|.++|++ +| +++++|++++.+..++ +.. .++|.++.|+||+++.|.|+|+++.+++.++.+..
T Consensus 181 ~eI~~i~~~--~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~-~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~~ 257 (374)
T PLN03032 181 DRILRILKE--LGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFR-KPIGSVSVSGHKFLGCPMPCGVALTRKKHVKALSQ 257 (374)
T ss_pred HHHHHHHHH--hCCCCCCeeEEEEccchhhhhhccCCCcccCCC-cCCcEEEECcccccCCCcCeEEEEEEchhhHhhcc
Confidence 999999999 65 6999999998876664 433 36899999999998769999999999887765432
Q ss_pred CCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccC
Q 017726 225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWF 304 (367)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 304 (367)
...|+...+ ....++.+....+.++.++..+..+|+.++.+++.++++++.+.|++.++++.... .
T Consensus 258 ---~~~Yl~~~d--------~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~p---~ 323 (374)
T PLN03032 258 ---NVEYLNSRD--------ATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEAGLTCRLNE---L 323 (374)
T ss_pred ---CCcccCCCC--------CcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEECC---C
Confidence 112221111 11233455555688899999999999999999999999999999999987765531 2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCH
Q 017726 305 SDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNE 356 (367)
Q Consensus 305 ~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~ 356 (367)
+ ..++|+.| ..+. +.+++.+... ...+|+......+.
T Consensus 324 ~-~~V~f~~~---~~~~----~~~~w~l~~~-------~~~~hi~vm~~~~~ 360 (374)
T PLN03032 324 S-STVVFERP---MDEA----FIKKWQLACE-------GDIAHVVVMPNVTV 360 (374)
T ss_pred c-eEEEEcCC---CcHh----Hhheeeeccc-------CCEEEEEECCCCCH
Confidence 3 35666654 1111 3233333321 23799988876664
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-28 Score=225.14 Aligned_cols=303 Identities=15% Similarity=0.080 Sum_probs=210.6
Q ss_pred CCChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhcC----C-CCceEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 18 VHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKT----T-SGTPFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~----~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
.++|+.+.+++.+.... ..+|.......++|+.++++++. . .+++|++|+|+++++..++.+++.+||+|+++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~ 126 (409)
T PLN02656 47 FHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLARPGANILLP 126 (409)
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHHhCCCCeEEEe
Confidence 36678888888774332 22344345567888888888752 1 23469999999999999999889999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHh
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE 165 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~ 165 (367)
+|.|..+. ..++..|++++.+++.. ++.+|+++++++++ ++++++++++|+||||.+++ +++|.++|++
T Consensus 127 ~p~y~~~~--~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~----~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~ 200 (409)
T PLN02656 127 RPGFPIYE--LCAAFRHLEVRYVDLLPEKGWEVDLDAVEALAD----QNTVALVIINPGNPCGNVYSYQHLKKIAETAEK 200 (409)
T ss_pred CCCCCcHH--HHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhc----cCceEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99876543 44666899999999853 45789999999887 46799999999999999975 6778888888
Q ss_pred cCCCcEEEEeeeeccCcee----ec---cccccceEEEecCCCcccCCCc--ceeeeeC--------HHHHHHhccCCCC
Q 017726 166 YRHPALFLVDGVSSICAID----FR---MDEWGIDVALTGSQKALSLPTG--MGIVCAS--------PKALEASKTAKSV 228 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~----~~---~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~--------~~~~~~~~~~~~~ 228 (367)
++++||+|++|...... .+ .......+++.|+||.+. .+| +|+++++ +++++++.....
T Consensus 201 --~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~-~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~- 276 (409)
T PLN02656 201 --LKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWI-VPGWRLGWFVTTDPSGSFRDPKIVERIKKYFD- 276 (409)
T ss_pred --cCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhcc-CcceeEEEEEEeCcccccccHHHHHHHHHHHh-
Confidence 99999999998743321 11 112234688899999864 444 6999984 466666543210
Q ss_pred ceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCcc-ccCCCccCCC
Q 017726 229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKN-CTQKEEWFSD 306 (367)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~ 306 (367)
. ...++.....++..+++...+.-+++.++.++++++.+.+.|+++ ++.. ..| .++
T Consensus 277 ------------~------~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p----~gg 334 (409)
T PLN02656 277 ------------I------LGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCITCPHKP----EGS 334 (409)
T ss_pred ------------h------hcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCC----CeE
Confidence 0 011344333333334432111127777888899999999999887 3332 234 466
Q ss_pred ceEEEEcCCC----C-CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC
Q 017726 307 TVTAVIVPSH----I-NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352 (367)
Q Consensus 307 ~~~~~~~~~~----~-~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~ 352 (367)
.++|++++.. . +..+++..+.++.||.+.||..+...+++||++..
T Consensus 335 ~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~~ 385 (409)
T PLN02656 335 MAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGLKNWLRITFAA 385 (409)
T ss_pred EEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeCC
Confidence 7788887421 2 34566655556679999998655456789999765
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=222.96 Aligned_cols=279 Identities=15% Similarity=0.162 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCC-CeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCC
Q 017726 44 TKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPG-DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAK 122 (367)
Q Consensus 44 ~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~g-d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d 122 (367)
..++|+.+++++|++++ +|++|+|+++++..++.+++.+| |.|+++.|.|..+ ...++..|++++.++++.++.+|
T Consensus 62 ~~~Lr~aia~~~~~~~~-~I~it~Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y--~~~~~~~g~~v~~v~~~~~~~~~ 138 (354)
T PRK04635 62 PPELINAYSAYAGVAPE-QILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMY--AISAETFNVGVKALPLTADYQLP 138 (354)
T ss_pred HHHHHHHHHHHhCcCHH-HEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHH--HHHHHHcCCEEEEEecCCCCCCC
Confidence 57899999999999775 49999999999999999988898 8999999976543 35578899999999998777889
Q ss_pred HHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceee---cc-ccccceEEEec
Q 017726 123 LDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF---RM-DEWGIDVALTG 198 (367)
Q Consensus 123 ~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~---~~-~~~~~d~~~~s 198 (367)
++.+++ + +++|+|++|+|+||||.++|.+++.++++.. .+++||+|++|....... +. .....-+++.|
T Consensus 139 ~~~l~~-~-----~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~-~~~~vivDeay~~~~~~~s~~~~~~~~~~~iv~~S 211 (354)
T PRK04635 139 LDYIEQ-L-----DGAKLVFICNPNNPTGTVIDRADIEQLIEMT-PDAIVVVDEAYIEFCPEYSVADLLASYPNLVVLRT 211 (354)
T ss_pred HHHHHh-c-----cCCCEEEEeCCCCCCCccCCHHHHHHHHHhC-CCcEEEEeCchHhhccCcchHHHHhhCCCEEEEec
Confidence 988863 3 3679999999999999999999999999873 269999999986443111 11 11123478899
Q ss_pred CCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC---hHH
Q 017726 199 SQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG---LEN 273 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g---~~~ 273 (367)
+||+++ .+| +|++++++++++.+..... ++..+.. ...+++..+.+.+ +++
T Consensus 212 ~SK~~~-l~GlRlG~~i~~~~~~~~l~~~~~--------------------~~~~~~~---~~~~a~~~l~~~~~~~~~~ 267 (354)
T PRK04635 212 LSKAFA-LAGARCGFTLANEELIEILMRVIA--------------------PYPVPLP---VSEIATQALSEAGLARMKF 267 (354)
T ss_pred hHHHhh-hhHHHHhhhhCCHHHHHHHHhhcC--------------------CCCCCHH---HHHHHHHHHhcccHHHHHH
Confidence 999984 555 6999999999887763211 1223332 2233444444433 445
Q ss_pred HHHHHHHHHHHHHHHHHHcC-CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC
Q 017726 274 VIERHRRLGKATRLAVEAWG-LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352 (367)
Q Consensus 274 ~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~ 352 (367)
.++.+.++++.+.+.|++++ +.+..+ .+ .+++++++ +..++.+.|. ++||.++.+..+..++++||++ +
T Consensus 268 ~~~~~~~~r~~l~~~L~~~~~~~~~~~----~g-~f~~~~~~---~~~~~~~~l~-~~gv~v~~~~~~~~~~~lRis~-~ 337 (354)
T PRK04635 268 QVLDLNAQGARLQAALSMYGGAKVLEG----NG-NYVLAKFD---DVDAVFKALW-DAGIVARAYKDPRLANCIRFSF-S 337 (354)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceECCC----CC-cEEEEECC---CHHHHHHHHH-HCCEEEEECCCCCCCCeEEEEe-C
Confidence 56677888899999999984 776654 23 46777774 4678888775 5699998654333456899994 6
Q ss_pred CCCHHHHHHhhhhc
Q 017726 353 HLNEVMFNFQLLFQ 366 (367)
Q Consensus 353 ~~~~~~~~~~~l~~ 366 (367)
..++.+.+.++|++
T Consensus 338 ~~e~~~~l~~al~~ 351 (354)
T PRK04635 338 NRAETDKLIGLIRN 351 (354)
T ss_pred CHHHHHHHHHHHHH
Confidence 67777777777764
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-28 Score=221.37 Aligned_cols=298 Identities=14% Similarity=0.070 Sum_probs=207.1
Q ss_pred CCCChHHHHHHHccCCCC---CCCCcHHHHHHHHHHHHHHHhc--------CCCCceEEecCChhHHHHHHHHccCCCCC
Q 017726 17 PVHIPDQVIRAMNRNNED---YRSPAVPALTKTLLEDIKKIFK--------TTSGTPFLIPTTGTGAWESALTNTLSPGD 85 (367)
Q Consensus 17 p~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~~--------~~~~~~v~~~~ggt~al~~~~~~~~~~gd 85 (367)
|.++|+.+.+++.+.... ...|. .....++|+.++++++ +++ ++|++|+|+++++..++.+++.+||
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~G~~~Lr~aia~~~~~~~~~~~~v~~-~~I~it~Ga~~al~~~~~~~~~~g~ 116 (374)
T PRK02610 39 PYDLPPDLKQKLAWLYQQGIESNRYP-DGGHEALKQAIAEYVNESAAGSSQITP-ANISVGNGSDELIRSLLIATCLGGE 116 (374)
T ss_pred CCCCCHHHHHHHHHHHhhcccccCCC-CCchHHHHHHHHHHhCccccccCCCCH-HHEEEcCChHHHHHHHHHHHcCCCC
Confidence 456788899988763222 11222 2456789999999997 444 4599999999999887777677776
Q ss_pred -eEEEEeCCcchHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHH
Q 017726 86 -RIISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLL 163 (367)
Q Consensus 86 -~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~ 163 (367)
+|+++.|.|..+ ...++..|++++.++.+. ++.+|++++++++++...+++|+|++++||||||.+++.+++.+++
T Consensus 117 ~~Vlv~~P~y~~~--~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~ 194 (374)
T PRK02610 117 GSILVAEPTFSMY--GILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLR 194 (374)
T ss_pred CeEEEcCCChHHH--HHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 899999977654 366788999999999865 3689999999998741113689999999999999999998888876
Q ss_pred HhcCCCcEEEEeeeeccCceee---ccccccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeechHHHHH
Q 017726 164 DEYRHPALFLVDGVSSICAIDF---RMDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIK 239 (367)
Q Consensus 164 ~~~~~~~~vi~D~~~~~~~~~~---~~~~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (367)
+- .++++||+|++|....... .......-+++.|+||.++ ...++|++++++++++++.....
T Consensus 195 ~~-~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v~~~~l~~~l~~~~~------------ 261 (374)
T PRK02610 195 SL-PEDILVVIDEAYFEFSQTTLVGELAQHPNWVILRTFSKAFRLAAHRVGYAIGHPELIAVLEKVRL------------ 261 (374)
T ss_pred hc-cCCcEEEEeccccccCccchHHHHhcCCCEEEEEecchhccCcccceeeeecCHHHHHHHHHhcC------------
Confidence 53 3689999999987442211 1111123578899999993 22336999999999888765321
Q ss_pred HhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCC
Q 017726 240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHIN 318 (367)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (367)
.++.+.....+...++...... ++.+ ++..+.++.+.+.|+++ ++.+.+ ..+.++|++++.+.+
T Consensus 262 --------~~~~~~~~q~a~~~~l~~~~~~-~~~~-~~~~~~r~~l~~~L~~~~~~~~~p-----~~g~f~~~~l~~~~~ 326 (374)
T PRK02610 262 --------PYNLPSFSQLAAQLALEHRQEL-LAAI-PEILQERDRLYQALQELPQLRVWP-----SAANFLYLRLSQDAA 326 (374)
T ss_pred --------CCCCCHHHHHHHHHHhcCHHHH-HHHH-HHHHHHHHHHHHHHHhCCCcEeCC-----CcceEEEEeCCCCCC
Confidence 1223443334444444332221 3333 33444577788888877 665543 345678888876667
Q ss_pred HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC
Q 017726 319 SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352 (367)
Q Consensus 319 ~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~ 352 (367)
..++++.|. ++||.++++ .+++||++..
T Consensus 327 ~~~~~~~l~-~~gi~v~~~-----~~~lRls~~~ 354 (374)
T PRK02610 327 LAALHQALK-AQGTLVRHT-----GGGLRITIGT 354 (374)
T ss_pred HHHHHHHHH-HCCEEEEeC-----CCeEEEeCCC
Confidence 889999985 559999753 3579999643
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-28 Score=225.26 Aligned_cols=325 Identities=16% Similarity=0.132 Sum_probs=225.2
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCCCC-----------CCcHHHHHHH-HHHHHHHHhcCCCCceEEecCChhHHHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNEDYR-----------SPAVPALTKT-LLEDIKKIFKTTSGTPFLIPTTGTGAWES 75 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~~~-----------~~~~~~~~~~-~~~~la~~~~~~~~~~v~~~~ggt~al~~ 75 (367)
.+.+.+.+++.++++.|++++.+...... +....+..++ +++.+++++|.+... +++ +||+.|+..
T Consensus 25 ~~~~~l~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~-i~~-~sgt~al~~ 102 (416)
T PRK00011 25 EEHIELIASENFVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYAN-VQP-HSGSQANAA 102 (416)
T ss_pred hcCeeeecccCcCCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCcee-eec-CCchHHHHH
Confidence 46678889999999999999977532111 1122333444 577999999998643 544 567899999
Q ss_pred HHHccCCCCCeEEEEeCCcchHH--H-HHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcc
Q 017726 76 ALTNTLSPGDRIISFLIGQFSLL--W-IDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATG 151 (367)
Q Consensus 76 ~~~~~~~~gd~vl~~~~~~~~~~--~-~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG 151 (367)
++.+++++||+|+++.+.|.++. + .......|.+++.++.+. ++.+|++++++++++ +++++|++++++ +|
T Consensus 103 ~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~---~~~k~v~~~~~~--~~ 177 (416)
T PRK00011 103 VYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALE---HKPKLIIAGASA--YS 177 (416)
T ss_pred HHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHh---cCCCEEEECCCc--CC
Confidence 99999999999999999876532 1 111233467888888763 478999999999974 357898887544 56
Q ss_pred ccccHHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCCcceeeeeC-HHHHHHhccC
Q 017726 152 VTNNLSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCAS-PKALEASKTA 225 (367)
Q Consensus 152 ~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~-~~~~~~~~~~ 225 (367)
...|+++|.++|++ +|+++++|++|+.+.. +.++. ++|++++|+||+++|+.| |+++.+ +++.+++...
T Consensus 178 ~~~~~~~I~~la~~--~~~~livD~a~~~g~~~~g~~~~~~~--~~di~~~S~~K~l~g~~g-g~i~~~~~~~~~~l~~~ 252 (416)
T PRK00011 178 RPIDFKRFREIADE--VGAYLMVDMAHIAGLVAAGVHPSPVP--HADVVTTTTHKTLRGPRG-GLILTNDEELAKKINSA 252 (416)
T ss_pred CccCHHHHHHHHHH--cCCEEEEECcchhcccccCccCCCCC--CCcEEEecCCcCCCCCCc-eEEEeCCHHHHHHHHHH
Confidence 67899999999999 9999999999876543 22333 679999999999987776 777775 6877777543
Q ss_pred CCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCC
Q 017726 226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFS 305 (367)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 305 (367)
... +. ..++....++++..++....++++++++++..++++++++.|+++|+++.. .. ..
T Consensus 253 ~~~---------------~~--~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~--~~ 312 (416)
T PRK00011 253 VFP---------------GI--QGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAERGFRVVS-GG--TD 312 (416)
T ss_pred hCc---------------cc--cCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeeee-cC--CC
Confidence 211 11 123444455565556655555567888999999999999999999887654 11 12
Q ss_pred CceEEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCC------CCCcEEEEeecC------CCCHHHHHHhhhh
Q 017726 306 DTVTAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNK------VAGKVFRIGHLG------HLNEVMFNFQLLF 365 (367)
Q Consensus 306 ~~~~~~~~~~-~~~~~~l~~~L~~~~gv~v~~g~~~------~~~~~iRi~~~~------~~~~~~~~~~~l~ 365 (367)
.+++++.+++ +.+..++.+.|. +.||.+..+..+ ..+..+|++... +.++.+...++|+
T Consensus 313 ~~~~~i~~~~~~~~~~~~~~~L~-~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~ 384 (416)
T PRK00011 313 NHLVLVDLRSKGLTGKEAEAALE-EANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIA 384 (416)
T ss_pred CeEEEEeCcccCCCHHHHHHHHH-HcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHH
Confidence 3567777742 346678888885 559999854322 223569997532 2344555555554
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=226.15 Aligned_cols=317 Identities=14% Similarity=0.091 Sum_probs=203.1
Q ss_pred CChHHHHHHHccCCC------CCCCCcHHHHHHHHHHHHHHHh------cCCCCceEEecCChhHHHHHHHHccCCCCCe
Q 017726 19 HIPDQVIRAMNRNNE------DYRSPAVPALTKTLLEDIKKIF------KTTSGTPFLIPTTGTGAWESALTNTLSPGDR 86 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~------~~~~~~~~~~~~~~~~~la~~~------~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~ 86 (367)
++++.+.+++.+... ...+|.......++|+.+++++ ++++ ++|++|+|+++++.++. .++.+||+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~-~~I~it~Ga~~al~~l~-~~~~~gd~ 124 (409)
T PRK07590 47 PLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISA-DEIFISDGAKCDTGNIL-DIFGPDNT 124 (409)
T ss_pred CCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCCh-hhEEECCCHHHHHHHHH-HhcCCCCE
Confidence 355666666655322 1223434455678899998876 3444 46999999999998764 55689999
Q ss_pred EEEEeCCcchHHHHHHHHHhCCc-----------eEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc
Q 017726 87 IISFLIGQFSLLWIDQQQRLNFN-----------VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN 155 (367)
Q Consensus 87 vl~~~~~~~~~~~~~~~~~~g~~-----------~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~ 155 (367)
|++.+|.|+.+. ..++..|.+ ++.++++.++.+.++ + .+ +++|+|++++|+||||.+++
T Consensus 125 V~v~~P~Y~~~~--~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d-~----~~---~~~k~i~l~nP~NPTG~~~s 194 (409)
T PRK07590 125 IAVTDPVYPVYV--DTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPE-L----PE---EKVDIIYLCFPNNPTGTVLT 194 (409)
T ss_pred EEEeCCCCcchH--HHHHHcCCcccccccccccceeEeecccccCCccc-C----cc---cCceEEEEeCCCCCcCCcCC
Confidence 999999887754 556778876 888888643323222 1 11 36799999999999999997
Q ss_pred H---HHHHHHHHhcCCCcEEEEeeeeccCcee----ecc---ccc-cceEEEecCCCccc-CCCcceeeeeCHHHHHHhc
Q 017726 156 L---SKVRKLLDEYRHPALFLVDGVSSICAID----FRM---DEW-GIDVALTGSQKALS-LPTGMGIVCASPKALEASK 223 (367)
Q Consensus 156 ~---~~i~~~~~~~~~~~~vi~D~~~~~~~~~----~~~---~~~-~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~ 223 (367)
. ++|.++|++ ++++||+|++|...... ... ... +..+++.|+||.++ ....+|++++++++++++.
T Consensus 195 ~~~~~~l~~~a~~--~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i~~~~li~~~~ 272 (409)
T PRK07590 195 KEQLKAWVDYAKE--NGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAYTVVPKELKGKTS 272 (409)
T ss_pred HHHHHHHHHHHHH--cCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCcCceeEEEEcCHHHhhhcc
Confidence 5 457777888 99999999998743211 111 111 23578899999994 2333799999999886432
Q ss_pred cCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCcc
Q 017726 224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEW 303 (367)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 303 (367)
...... ............ ....+.....++..++..-...-+++.++.++++++.+.+.|++.|+.+..+
T Consensus 273 ~~~~~~----~~~~~~~~~~~~--~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~---- 342 (409)
T PRK07590 273 DGEGVS----LNSLWNRRQSTK--FNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLESAGFEVYGG---- 342 (409)
T ss_pred ccchhh----hHHHHHHHHhhc--ccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC----
Confidence 100000 000000000010 1123433333333333211111266778888999999999999988776654
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCCCCHHHH
Q 017726 304 FSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~~~~~~~ 359 (367)
.++.++|++++++.+..++++.|.+++||.+.+|..+ ...+++||++....++.+.
T Consensus 343 ~g~~f~wi~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~ 400 (409)
T PRK07590 343 VNAPYIWVKTPDGMSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAFGSRENVLE 400 (409)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEccCCHHHHHH
Confidence 4566889999766777889998887789999988533 2346899996443333333
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-28 Score=223.95 Aligned_cols=303 Identities=15% Similarity=0.133 Sum_probs=212.0
Q ss_pred CCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhc-----CCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 18 VHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFK-----TTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~-----~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
.++++.+.+++.+.......|.......++|+.++++++ .++ ++|++|+|+++++..++.+++.+||+|++++|
T Consensus 42 ~~~~~~~~~a~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~-~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~p 120 (397)
T PRK07568 42 IKTPEVFFEAIKNYDEEVLAYSHSQGIPELREAFAKYYKKWGIDVEP-DEILITNGGSEAILFAMMAICDPGDEILVPEP 120 (397)
T ss_pred CCCCHHHHHHHHHHhcCCcCcCCCCCCHHHHHHHHHHHHHhCCCCCc-ceEEEcCChHHHHHHHHHHhcCCCCEEEEecC
Confidence 356788888887643332334334556789999998884 344 46999999999999999888899999999998
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCCC--CC-CCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhc
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDWG--EG-AKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEY 166 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~~--~~-~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~ 166 (367)
.|... ...++..|++++.++.+.+ +. .++++++++++ +++++|++++|+||||.+++ +++|.++|++
T Consensus 121 ~y~~~--~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~----~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~- 193 (397)
T PRK07568 121 FYANY--NGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLIT----PKTKAILISNPGNPTGVVYTKEELEMLAEIAKK- 193 (397)
T ss_pred CCccH--HHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcC----ccceEEEEECCCCCCCccCCHHHHHHHHHHHHH-
Confidence 66543 3456778999999998632 23 25789998887 46799999999999999986 6778888888
Q ss_pred CCCcEEEEeeeeccCcee-------ecccc-ccceEEEecCCCcccC-CCcceeeeeC-HHHHHHhccCCCCceeechHH
Q 017726 167 RHPALFLVDGVSSICAID-------FRMDE-WGIDVALTGSQKALSL-PTGMGIVCAS-PKALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~~-------~~~~~-~~~d~~~~s~~K~~~g-~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~ 236 (367)
+|+++++|+++...... ..... ....+++.|+||.++. ..++|+++++ +++++.+.....
T Consensus 194 -~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~~--------- 263 (397)
T PRK07568 194 -HDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQ--------- 263 (397)
T ss_pred -CCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCCHHHHHHHHHHhh---------
Confidence 99999999998643211 11111 2345888999999852 2347998874 677766542110
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCC
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS 315 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~ 315 (367)
. .++++.....++..++.... .-++++++.++++++.+.+.|+++ ++.+..+ .++.++|++++.
T Consensus 264 -------~---~~~~s~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p----~g~~~~~~~l~~ 328 (397)
T PRK07568 264 -------A---RLSPPTLEQIGAAALLDTPE-SYFDEVREEYKKRRDILYEELNKIPGVVCEKP----KGAFYIIAKLPV 328 (397)
T ss_pred -------c---cCCCCcHHHHHHHHHhhCCH-HHHHHHHHHHHHHHHHHHHHHhcCCCceecCC----CcceEEEEecCC
Confidence 0 11233333344444443221 226777888999999999999887 6666555 456667888854
Q ss_pred CCCHHHHHHHHHhh-----CCeEEccCCCC-----CCCcEEEEeecCCC
Q 017726 316 HINSSEIVRRAWQR-----YNLSLGLGLNK-----VAGKVFRIGHLGHL 354 (367)
Q Consensus 316 ~~~~~~l~~~L~~~-----~gv~v~~g~~~-----~~~~~iRi~~~~~~ 354 (367)
. +..++.++|.++ +||.+.+|..+ ..++++||++....
T Consensus 329 ~-~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~~~ 376 (397)
T PRK07568 329 D-DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVLNE 376 (397)
T ss_pred C-CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeCCH
Confidence 3 678899988764 69999998432 12468999976443
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-28 Score=220.41 Aligned_cols=311 Identities=15% Similarity=0.106 Sum_probs=212.3
Q ss_pred CcccccC--CCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCe
Q 017726 9 KNHLFVP--GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR 86 (367)
Q Consensus 9 ~~~~~~~--~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~ 86 (367)
+.+.+.- .|.++++.+.+++.+......+|. .....++|+.++++++++++ +|++|+|+++++..++.+++++||.
T Consensus 31 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~~~~lr~~ia~~~~~~~~-~I~it~G~~~al~~~~~~~~~~gd~ 108 (357)
T PRK14809 31 DLVKLSSNENPHGPSPAAVEAIREAAERVHSYP-KASHADLTAALADRWDVSPE-QVWLANGGDGALDYLARAMLDPGDT 108 (357)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhhhcCC-CCCHHHHHHHHHHHhCCCcc-eEEECCCHHHHHHHHHHHhcCCCCE
Confidence 3444443 345667778888776433222222 13466899999999998764 5999999999999999999999999
Q ss_pred EEEEeCCcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHH
Q 017726 87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLD 164 (367)
Q Consensus 87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~ 164 (367)
|++++|.|..+. ..++..|.+++.++++. ++.++.+++.+... ++|+|++++||||||.+++.+++.++++
T Consensus 109 V~v~~P~y~~~~--~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~k~i~l~~p~NPTG~~~s~~~~~~l~~ 181 (357)
T PRK14809 109 VLVPDPGFAYYG--MSARYHHGEVREYPVSKADDFEQTADTVLDAYD-----GERIVYLTSPHNPTGSEIPLDEVEALAE 181 (357)
T ss_pred EEEeCCChHHHH--HHHHHcCCeEEEEecccCcCCCcCHHHHHHhhc-----CCcEEEEeCCCCCCCcCCCHHHHHHHHH
Confidence 999999765432 34566788888888753 35567777766542 5699999999999999999999888887
Q ss_pred hcCCCcEEEEeeeeccCceeec----cccccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeechHHHHH
Q 017726 165 EYRHPALFLVDGVSSICAIDFR----MDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIK 239 (367)
Q Consensus 165 ~~~~~~~vi~D~~~~~~~~~~~----~~~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (367)
..+++++||+|++|........ .......+++.|+||.++ ...++|++++++++++++.....
T Consensus 182 ~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~------------ 249 (357)
T PRK14809 182 RTDEETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWADAYARVNT------------ 249 (357)
T ss_pred hCccCcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhheeeecCHHHHHHHHHhCC------------
Confidence 7434789999999875432111 111234688899999994 22337999999999888764311
Q ss_pred HhhcCCccCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCC
Q 017726 240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHIN 318 (367)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (367)
++..+.. +..+++..+.+.+ +++.++.++++++.+.+.|+..+ .. ..+.+++++++ +
T Consensus 250 --------~~~~~~~---~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~---~~-----~~g~f~~~~~~---~ 307 (357)
T PRK14809 250 --------PFAASEL---ACRAGLAALDDDEHVERTVETARWAREYIREELDAPT---WE-----SAGNFVLAEVG---D 307 (357)
T ss_pred --------CCCCCHH---HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcCcc---CC-----CCCCEEEEECC---C
Confidence 2223432 3344444443322 56667777777777877775432 22 24456777773 5
Q ss_pred HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhh
Q 017726 319 SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 319 ~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
..++++.|. ++||.+.+|..+..++++||++. ..++.+...+.|
T Consensus 308 ~~~~~~~l~-~~gv~v~~g~~f~~~~~iRls~~-~~~~~~~~l~~L 351 (357)
T PRK14809 308 ASAVAEAAQ-ERGVIVRDCTSFGLPECIRITCG-TREETERAVEVL 351 (357)
T ss_pred HHHHHHHHH-HCCEEEEECccCCCCCeEEEecC-CHHHHHHHHHHH
Confidence 678999885 55999999865544578999964 333333333333
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-28 Score=219.02 Aligned_cols=318 Identities=14% Similarity=0.129 Sum_probs=224.1
Q ss_pred cCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCC--------
Q 017726 14 VPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGD-------- 85 (367)
Q Consensus 14 ~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd-------- 85 (367)
.-|-+.+|+++++++.+..... ....+..+++++.+++++|.+. +++++|+|.|+++++.+++.+||
T Consensus 19 ~~g~s~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~a~~~g~~~---~~~~~g~t~al~~al~al~~~Gd~~~~~~~~ 93 (363)
T TIGR01437 19 ILGVSTVSDEVADAQKRGAQNY--FEIKELVNKTGEYIANLLGVED---AVIVSSASAGIAQSVAAVITRGNRYLVENLH 93 (363)
T ss_pred cCCCCCCCHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHhhCCCe---EEEEcCHHHHHHHHHHHHhcCCCcchhhccc
Confidence 3455669999999999975432 2355778999999999999763 78999999999999999888888
Q ss_pred -------eEEEEeCCcchH--HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEE-EEecCCCcccccc
Q 017726 86 -------RIISFLIGQFSL--LWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAIC-IVHNETATGVTNN 155 (367)
Q Consensus 86 -------~vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~-~~~~~n~tG~~~~ 155 (367)
+|+++.+.++.+ .+...+...|++++.++. ++.+|+++++++++ ++|++++ +++++||+|.+.|
T Consensus 94 ~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~--~~~~d~~~le~ai~----~~t~ai~~v~~~~~~~g~~~~ 167 (363)
T TIGR01437 94 DSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGY--ANECSAEQLEAAIT----EKTAAILYIKSHHCVQKSMLS 167 (363)
T ss_pred ccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcC--CCCCCHHHHHHhcC----hhceEEEEEecCCCCcCCcCC
Confidence 888877533322 134566778999998876 45689999999998 4668765 5678899999999
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechH
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (367)
+++|.++|++ +|+++++|++|+... . .....++|++++|+||++.||. .|+++.++++++.+....... .
T Consensus 168 ~~~i~~~a~~--~gi~vivD~a~~~~~-~-~~~~~g~D~~~~S~~K~l~gp~-~G~l~~~~~~i~~~~~~~~~~-~---- 237 (363)
T TIGR01437 168 VEDAAQVAQE--HNLPLIVDAAAEEDL-Q-KYYRLGADLVIYSGAKAIEGPT-SGLVLGKKKYIEWVKLQSKGI-G---- 237 (363)
T ss_pred HHHHHHHHHH--cCCeEEEECCCCCch-H-HHHHcCCCEEEEeCCcccCCCc-eEEEEEcHHHHHHHHhccCCC-c----
Confidence 9999999999 999999999997311 1 1123468999999999998888 699999988887764322110 0
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc-cCC--CceEEE
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE-WFS--DTVTAV 311 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-~~~--~~~~~~ 311 (367)
..++.+ + ..++++.++++.+.+.+.+.+. ...++++++.+.|+++ |+.+..+.+. ... ...+.|
T Consensus 238 ---~~~~~~-----~---~~~~gl~aAl~~~~~~~~~~~~-~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~ 305 (363)
T TIGR01437 238 ---RAMKVG-----K---ENILGLTAALEQYLSTGKESGA-EMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRF 305 (363)
T ss_pred ---ceeccC-----H---HHHHHHHHHHHHHHccCcccHH-HHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEE
Confidence 111122 2 2357888899988776644433 3445677899999997 8877643111 011 122334
Q ss_pred EcC-CCCCHHHHHHHHHhh-CCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHhhhhc
Q 017726 312 IVP-SHINSSEIVRRAWQR-YNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQLLFQ 366 (367)
Q Consensus 312 ~~~-~~~~~~~l~~~L~~~-~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~l~~ 366 (367)
... .+.+..++.++|.++ .+|.+++- +.....+|++... ..++.|.+.++|.+
T Consensus 306 ~~~~~g~~~~~l~~~L~~~~~~I~~r~~--~~~~~~~~l~~~~~~~~e~~~~~~~l~~ 361 (363)
T TIGR01437 306 DESELGMTAADVVQALRQGEPAIYTRGY--KANEGIIEIDPRSVTGGQLDIIVERIRE 361 (363)
T ss_pred eccCCCCCHHHHHHHHhcCCCCEEEeee--eecCCeEEEEeecCCHHHHHHHHHHHHH
Confidence 431 367889999999653 23666542 2334567777654 33456666666654
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-28 Score=223.26 Aligned_cols=302 Identities=16% Similarity=0.103 Sum_probs=206.2
Q ss_pred ChHHHHHHHccCCCC-CCCCcH----HHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeCC
Q 017726 20 IPDQVIRAMNRNNED-YRSPAV----PALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIG 93 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~-~~~~~~----~~~~~~~~~~la~~~~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~ 93 (367)
.++.+.+++.+.... ...|.. .+..+++.+.+++.+|.+ .+++|++|+|+++|+..++.+++++||.|++++|.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vl~~~p~ 126 (402)
T PRK06107 47 TPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPY 126 (402)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 356677776664321 112222 233444444445555664 34569999999999999998889999999999996
Q ss_pred cchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccH---HHHHHHHHhcCC
Q 017726 94 QFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL---SKVRKLLDEYRH 168 (367)
Q Consensus 94 ~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~---~~i~~~~~~~~~ 168 (367)
|+.+. ......+..++.++.+. ++.+|++++++++. ++++++++++|+||||.+++. +++.++|++ +
T Consensus 127 y~~y~--~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~----~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~--~ 198 (402)
T PRK06107 127 WVSYP--DMVLANDGTPVIVACPEEQGFKLTPEALEAAIT----PRTRWLILNAPSNPTGAVYSRAELRALADVLLR--H 198 (402)
T ss_pred CcCHH--HHHHHcCCEEEEecCCcccCCCCCHHHHHhhcC----cCceEEEEECCCCCCCcCcCHHHHHHHHHHHHH--c
Confidence 66543 33455677777887753 35688999999886 467999999999999999975 556777777 7
Q ss_pred -CcEEEEeeeeccCce---ee-cc-----ccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHH
Q 017726 169 -PALFLVDGVSSICAI---DF-RM-----DEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 169 -~~~vi~D~~~~~~~~---~~-~~-----~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (367)
++++|+|++|+.... +. .+ ...+..+++.|+||.++ .+| +|++++++++++.+.....
T Consensus 199 ~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~-~pGlRiG~~~~~~~~~~~~~~~~~--------- 268 (402)
T PRK06107 199 PHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYA-MTGWRIGYAAGPADLIAAINKLQS--------- 268 (402)
T ss_pred CCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhc-CcccceeeeecCHHHHHHHHHHHH---------
Confidence 999999999864211 11 11 11135688889999994 455 6999999999887764311
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcC-
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVP- 314 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~- 314 (367)
. ..+.++.....++..++..- +.-+++.++.+.++++.+.+.|++. |+.+..+ .+++++|++++
T Consensus 269 -------~--~~~~~s~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p----~gg~~~~~~~~~ 334 (402)
T PRK06107 269 -------Q--SSSCPSSISQAAAAAALNGD-QSFVTESVAVYKQRRDYALALLNAIPGLSCLVP----DGAFYLYVNCAG 334 (402)
T ss_pred -------h--cccCCChHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCC----CcceEEeeeccc
Confidence 0 01234443333333343211 1116777888899999999999887 7777665 46667777762
Q ss_pred -------CC---CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCC
Q 017726 315 -------SH---INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH 353 (367)
Q Consensus 315 -------~~---~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~ 353 (367)
.+ .+..++++.|.+++||.+.+|..+...+++||++...
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~~~ 383 (402)
T PRK06107 335 LIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIATS 383 (402)
T ss_pred ccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCCC
Confidence 11 1456888888777899999996654467899998753
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-28 Score=223.31 Aligned_cols=306 Identities=13% Similarity=0.036 Sum_probs=206.6
Q ss_pred CCChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 18 VHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
.++|+.+.+++.+.... ...|.......++|+.+++++ |.+ .+++|++|+|+++++..++. ++.+||.|++.
T Consensus 47 ~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~-l~~~Gd~Vlv~ 125 (433)
T PRK06855 47 EKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYG-LLRREARVIGP 125 (433)
T ss_pred CCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHH-hcCCCCeEEEe
Confidence 36777777777664322 223444456678888888887 432 33569999999999998875 78999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHh
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE 165 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~ 165 (367)
.|.|+.+.. ......|++++.+++++ ++.+|+++++++++.. ++++++++++|+||||.+++ +++|.++|++
T Consensus 126 ~P~Y~~~~~-~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~--~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~ 202 (433)
T PRK06855 126 SPAYSTHSS-AEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYN--PSIAGILLINPDNPTGAVYPKEILREIVDIARE 202 (433)
T ss_pred CCCCchHHH-HHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcC--CCceEEEEECCCCCCCcCCCHHHHHHHHHHHHH
Confidence 998876432 12334588888888764 3568999999998742 25799999999999999998 4567777888
Q ss_pred cCCCcEEEEeeeeccCcee----ec---cccccceEEEecCCCccc-CCCcceeeeeC-----H---HHHHHhccCCCCc
Q 017726 166 YRHPALFLVDGVSSICAID----FR---MDEWGIDVALTGSQKALS-LPTGMGIVCAS-----P---KALEASKTAKSVR 229 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~----~~---~~~~~~d~~~~s~~K~~~-g~~g~g~~~~~-----~---~~~~~~~~~~~~~ 229 (367)
+|++||+|++|...... .+ ....+..+++.|+||.++ ....+|+++++ + ++++.+....
T Consensus 203 --~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~--- 277 (433)
T PRK06855 203 --YDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAK--- 277 (433)
T ss_pred --cCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceEEEEEEeCCchhhHHHHHHHHHHHhh---
Confidence 99999999998754321 11 111123588999999994 33447999973 2 1222221110
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH-HhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCc
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-EEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDT 307 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~-~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~ 307 (367)
. . ...++.....++..++..-. +.-+++.++.++++++.+.+.|++. |+.+..+ .+++
T Consensus 278 ------------~-~---~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p----~gg~ 337 (433)
T PRK06855 278 ------------M-I---EVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLKVNRT----NGAF 337 (433)
T ss_pred ------------c-c---ccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccCC----CeeE
Confidence 0 0 01133333333333332210 1116777888899999999999887 7766666 5677
Q ss_pred eEEEEcCCCC---------------------------CHHHHHHHHHhhCCeEEccCCCCC-CCcEEEEeecC
Q 017726 308 VTAVIVPSHI---------------------------NSSEIVRRAWQRYNLSLGLGLNKV-AGKVFRIGHLG 352 (367)
Q Consensus 308 ~~~~~~~~~~---------------------------~~~~l~~~L~~~~gv~v~~g~~~~-~~~~iRi~~~~ 352 (367)
++|+++|++. +..+++..+.++.||.+.||..+. .+..+||++..
T Consensus 338 ~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~~~ 410 (433)
T PRK06855 338 YMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNGFRVTLLE 410 (433)
T ss_pred EEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCCceEEEECC
Confidence 8889887542 356777777778899999995542 23459999865
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-28 Score=222.63 Aligned_cols=310 Identities=14% Similarity=0.063 Sum_probs=207.2
Q ss_pred CCChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhc----CC-CCceEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 18 VHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFK----TT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~----~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
.++|+.+.+++.+.... ...|.......++|+.++++++ .+ .+++|++|+|+++++..++.+++++||.|+++
T Consensus 48 ~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~v~ 127 (409)
T PLN00143 48 FRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEANILLP 127 (409)
T ss_pred CCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHcCCCCEEEEc
Confidence 47788888877764332 1224333556678888888873 22 33569999999999999999999999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHh
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE 165 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~ 165 (367)
.|.|+.+. ..++..|.+++.+++. .++.+|+++++++++ ++++++++++||||||.+++ +++|.++|++
T Consensus 128 ~P~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~ 201 (409)
T PLN00143 128 RPGFPDVE--TYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIAD----ENTIAMVIINPGNPCGSVYSYEHLNKIAETARK 201 (409)
T ss_pred CCCCcCHH--HHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcc----cCCEEEEEECCCCCCCCccCHHHHHHHHHHHHH
Confidence 99877643 5567789999999874 346789999999886 46799999999999999998 5667778888
Q ss_pred cCCCcEEEEeeeeccCcee----ec---cccccceEEEecCCCcccCCCc--ceeeeeC-H-HHHHHhccCCCCceeech
Q 017726 166 YRHPALFLVDGVSSICAID----FR---MDEWGIDVALTGSQKALSLPTG--MGIVCAS-P-KALEASKTAKSVRVFFDW 234 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~----~~---~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~-~-~~~~~~~~~~~~~~~~~~ 234 (367)
++++||+|++|...... .+ .......+++.|+||.++ .+| +|+++++ + .+++.+...
T Consensus 202 --~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~-~pGlRvG~~v~~~p~~~~~~~~~~--------- 269 (409)
T PLN00143 202 --LGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWM-IPGWGLGWLVTCDPSGLLQICEIA--------- 269 (409)
T ss_pred --cCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcC-CCccceEEEEeeCchhhhhhHHHH---------
Confidence 99999999998753321 11 111124588999999963 444 6999983 4 332211100
Q ss_pred HHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCcc-c-cCCCccCCCceEEEE
Q 017726 235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKN-C-TQKEEWFSDTVTAVI 312 (367)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~-~-~~~~~~~~~~~~~~~ 312 (367)
....+.. .. ..+ ++.....++..++....+.-+++.+++++++.+.+.+.|++++... . .| .+++++|++
T Consensus 270 -~~~~~~~-~~-~~~-~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p----~gg~f~w~~ 341 (409)
T PLN00143 270 -DSIKKAL-NP-APF-PPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKA----EGAFFALVK 341 (409)
T ss_pred -HHHHHHH-hc-cCC-CCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC----CeeEEEEEe
Confidence 0000000 00 011 2332223333333211011266778888888888999998874222 1 23 466788888
Q ss_pred cCC----CC-CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCC
Q 017726 313 VPS----HI-NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH 353 (367)
Q Consensus 313 ~~~----~~-~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~ 353 (367)
++. +. +..++++.+.++.||.+.+|..+...+++||++...
T Consensus 342 l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~~~ 387 (409)
T PLN00143 342 LNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFAVE 387 (409)
T ss_pred cchhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEEcCC
Confidence 853 22 466787777667799999996655567899997643
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-28 Score=225.26 Aligned_cols=282 Identities=15% Similarity=0.101 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHHhcC------C-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHH-HhCCceEEE
Q 017726 42 ALTKTLLEDIKKIFKT------T-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQ-RLNFNVDVV 113 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~------~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-~~g~~~~~v 113 (367)
....++|+.++++++. + ++++|++|+|+++++..++.++++|||.|++++|.|..+. ..+. ..|++++.+
T Consensus 86 ~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~--~~~~~~~g~~~v~v 163 (468)
T PLN02450 86 HGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFD--RDLKWRTGVEIVPI 163 (468)
T ss_pred CChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchH--HHHhhcCCcEEEEE
Confidence 4456788888888851 1 3356999999999999999999999999999999776653 2234 579999999
Q ss_pred eCC--CCCCCCHHHHHHHHhcc---CCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccCce--
Q 017726 114 ESD--WGEGAKLDVLASKLAAD---TAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAI-- 183 (367)
Q Consensus 114 ~~~--~~~~~d~e~l~~~i~~~---~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~-- 183 (367)
+++ .++.+|++++++++.+. + .++|+|++++||||||.+++ +++|.++|++ ++++||+|++|+....
T Consensus 164 ~~~~~~~~~~~~~~le~~~~~~~~~~-~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~--~~~~iI~DE~Y~~~~f~~ 240 (468)
T PLN02450 164 HCSSSNGFQITESALEEAYQQAQKLN-LKVKGVLITNPSNPLGTTTTRTELNLLVDFITA--KNIHLISDEIYSGTVFDS 240 (468)
T ss_pred ecCCccCCcCCHHHHHHHHHHHHhcC-CCeeEEEEecCCCCCCcccCHHHHHHHHHHHHH--CCcEEEEEccccccccCC
Confidence 985 34567889999888641 1 37899999999999999997 4567777888 9999999999874221
Q ss_pred -ee----ccc---------cccceEEEecCCCccc-CCCcceeeeeCHHH-HHHhccCCCCceeechHHHHHHhhcCCcc
Q 017726 184 -DF----RMD---------EWGIDVALTGSQKALS-LPTGMGIVCASPKA-LEASKTAKSVRVFFDWKDYIKFYNLGTFW 247 (367)
Q Consensus 184 -~~----~~~---------~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (367)
++ ... .....+++.|+||.++ ....+|+++++++. ++.+.... .
T Consensus 241 ~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~------------------~-- 300 (468)
T PLN02450 241 PGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMS------------------S-- 300 (468)
T ss_pred CCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHh------------------h--
Confidence 11 110 1235688999999984 23447999998654 44333210 0
Q ss_pred CCCCcHHHHHHHHHHHHHH--HHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCC------H
Q 017726 248 PYTPSIQLLYGLRAALDLI--FEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHIN------S 319 (367)
Q Consensus 248 ~~~~~~~~~~al~~al~~~--~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~ 319 (367)
.+..+.....++..++..- .+.-+++.++++.+.++.+.+.|++.|+.+..+ .++.++|+++++..+ .
T Consensus 301 ~~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~gi~~~~~----~~g~flwi~l~~~~~~~~~~~~ 376 (468)
T PLN02450 301 FGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAAGIKCLKS----NAGLFCWVDMRHLLKSNTFEAE 376 (468)
T ss_pred cCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCC----CceEEEEEEchHhcCcCCchHH
Confidence 0113333223333333221 011156678888999999999999998877665 567788888853322 2
Q ss_pred HHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecC
Q 017726 320 SEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLG 352 (367)
Q Consensus 320 ~~l~~~L~~~~gv~v~~g~~~~--~~~~iRi~~~~ 352 (367)
.++.+.|.+++||.+.||..+. .+++|||++..
T Consensus 377 ~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~ 411 (468)
T PLN02450 377 MELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFAN 411 (468)
T ss_pred HHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecC
Confidence 4577888777899999985432 35689999765
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-27 Score=224.32 Aligned_cols=320 Identities=13% Similarity=0.029 Sum_probs=219.8
Q ss_pred CcccccCCCCCChHHHHHHHccCCCC-----CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNED-----YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALT 78 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~ 78 (367)
..+.+.+++...|..+++.+.+.... ...|....+..++|+.+++++ |.+ .+++|++|+|+++++..++.
T Consensus 130 ~~i~~~~~~~~fp~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~ 209 (534)
T PLN02231 130 SLLDKSETHGLFSADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQ 209 (534)
T ss_pred ccCCCCCccccCCHHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHH
Confidence 45667778888888888887764321 223555677788999999887 332 34569999999999999999
Q ss_pred ccC-CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCC--CCccEEEEEecCCCcccc
Q 017726 79 NTL-SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTA--HTIKAICIVHNETATGVT 153 (367)
Q Consensus 79 ~~~-~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~--~~~~lv~~~~~~n~tG~~ 153 (367)
+++ .+||.|+++.|.|+.+. ..++..|.+++.+++++ +|.+|++++++++++... .++|++++++|+||||.+
T Consensus 210 ~l~~~~gd~Vli~~P~Y~~y~--~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~v 287 (534)
T PLN02231 210 LLIRSEKDGILCPIPQYPLYS--ASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQV 287 (534)
T ss_pred HhccCCCCEEEEeCCCChhHH--HHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcC
Confidence 887 47999999999877653 45677899999999875 368999999999875210 267999999999999999
Q ss_pred cc---HHHHHHHHHhcCCCcEEEEeeeeccCcee----e-cccc---------cc-ceEEEecCCCcccCCCc--ceeee
Q 017726 154 NN---LSKVRKLLDEYRHPALFLVDGVSSICAID----F-RMDE---------WG-IDVALTGSQKALSLPTG--MGIVC 213 (367)
Q Consensus 154 ~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~----~-~~~~---------~~-~d~~~~s~~K~~~g~~g--~g~~~ 213 (367)
++ +++|.++|++ +|++||+|++|...... + ++.. .. .-+++.|.||.+.|.+| +||++
T Consensus 288 ls~e~l~~Iv~~a~~--~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~ 365 (534)
T PLN02231 288 LAEENQRDIVEFCKQ--EGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME 365 (534)
T ss_pred CCHHHHHHHHHHHHH--cCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEE
Confidence 96 5678888888 99999999998753321 1 1100 01 24677799998754444 69987
Q ss_pred e---CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHH-------HHHHh--ChHHHHHHHHHH
Q 017726 214 A---SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALD-------LIFEE--GLENVIERHRRL 281 (367)
Q Consensus 214 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~-------~~~~~--g~~~~~~~~~~~ 281 (367)
+ ++++++++..... . . ..++..+..+...++. .+.+. ..+++++.++++
T Consensus 366 ~~~~~~~l~~~l~k~~~-------------~--~----~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r 426 (534)
T PLN02231 366 VTGFTSDVREQIYKVAS-------------V--N----LCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARR 426 (534)
T ss_pred EecCCHHHHHHHHHHHh-------------h--h----cCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 6 6788777754211 0 0 0133333333333331 11110 134567789999
Q ss_pred HHHHHHHHHHc-CCccccCCCccCCCceEEEEc--CCC-C---------CHHHHHHHHHhhCCeEEccCCCCC--CC-cE
Q 017726 282 GKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV--PSH-I---------NSSEIVRRAWQRYNLSLGLGLNKV--AG-KV 345 (367)
Q Consensus 282 ~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--~~~-~---------~~~~l~~~L~~~~gv~v~~g~~~~--~~-~~ 345 (367)
++.+.+.|+++ |+.+..+ .+++++|.++ |.. . +...++++|.++.||.+.||..+. .+ .+
T Consensus 427 ~~~l~~~L~~~~gi~~~~p----~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~ 502 (534)
T PLN02231 427 AKTLEDALNSLEGVTCNKA----EGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWH 502 (534)
T ss_pred HHHHHHHHhcCCCceecCC----CeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCe
Confidence 99999999998 8888777 4666666444 221 1 133467778888899999986543 23 45
Q ss_pred EEEeecCCCC
Q 017726 346 FRIGHLGHLN 355 (367)
Q Consensus 346 iRi~~~~~~~ 355 (367)
||+++....+
T Consensus 503 ~Rit~~~~~e 512 (534)
T PLN02231 503 FRCTILPQED 512 (534)
T ss_pred EEEEeCCCHH
Confidence 9999754333
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-27 Score=217.18 Aligned_cols=317 Identities=18% Similarity=0.111 Sum_probs=222.1
Q ss_pred CCCChHHHHHHHcc--CCCCCCCCcHHHHHHHHHHHHHHHhcCC-----CCceEEecCChhHHHHHHHHccCCCCCeEEE
Q 017726 17 PVHIPDQVIRAMNR--NNEDYRSPAVPALTKTLLEDIKKIFKTT-----SGTPFLIPTTGTGAWESALTNTLSPGDRIIS 89 (367)
Q Consensus 17 p~~~~~~v~~a~~~--~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~ 89 (367)
|...++..++++.+ .......+.......++++.++++++.. ....+++++|+++++..++.++..+|++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~g~~vl~ 88 (350)
T cd00609 9 DFPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLV 88 (350)
T ss_pred CCCCCHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCCCCCEEEE
Confidence 33444444444443 2222233333455667777777777654 2345899999999999999999899999999
Q ss_pred EeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCH--HHHHHHHhccCCCCccEEEEEecCCCccccccHHHH---HHHHH
Q 017726 90 FLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKL--DVLASKLAADTAHTIKAICIVHNETATGVTNNLSKV---RKLLD 164 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~--e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i---~~~~~ 164 (367)
+.+.|++.. ..++..|.+++.++.+.++..+. +.++..+. +++++|++++++||+|.+.|.+++ .++|+
T Consensus 89 ~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~ 162 (350)
T cd00609 89 PDPTYPGYE--AAARLAGAEVVPVPLDEEGGFLLDLELLEAAKT----PKTKLLYLNNPNNPTGAVLSEEELEELAELAK 162 (350)
T ss_pred cCCCchhHH--HHHHHCCCEEEEEecccccCCccCHHHHHhhcC----ccceEEEEECCCCCCCcccCHHHHHHHHHHHH
Confidence 999888753 56788899999999987766654 56655544 578999999999999999986655 48999
Q ss_pred hcCCCcEEEEeeeeccCcee-------eccccccceEEEecCCCccc-CCCcceeeeeCH-HHHHHhccCCCCceeechH
Q 017726 165 EYRHPALFLVDGVSSICAID-------FRMDEWGIDVALTGSQKALS-LPTGMGIVCASP-KALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 165 ~~~~~~~vi~D~~~~~~~~~-------~~~~~~~~d~~~~s~~K~~~-g~~g~g~~~~~~-~~~~~~~~~~~~~~~~~~~ 235 (367)
+ +|+++++|++++.+... ......+.|+++.|++|+++ ++.++|++++++ ++.+.+....
T Consensus 163 ~--~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~--------- 231 (350)
T cd00609 163 K--HGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLL--------- 231 (350)
T ss_pred h--CCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHH---------
Confidence 9 99999999998764431 12334568999999999996 445579999999 6777665321
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCcc-ccCCCccCCCceEEEEcC
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKN-CTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~~~~~~~~~~~~~~ 314 (367)
.. ..++++.....++..+++... .+++++.+++.++++++.+.|++.+... ..+ ..+.+++++++
T Consensus 232 ----~~-----~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~----~~g~~~~~~~~ 297 (350)
T cd00609 232 ----PY-----TTSGPSTLSQAAAAAALDDGE-EHLEELRERYRRRRDALLEALKELGPLVVVKP----SGGFFLWLDLP 297 (350)
T ss_pred ----Hh-----cccCCChHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCccccCC----CccEEEEEecC
Confidence 01 123466666666666666554 3478888999999999999999985433 222 35567778875
Q ss_pred CCCCHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecCCCCHHHHHHhhhh
Q 017726 315 SHINSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 315 ~~~~~~~l~~~L~~~~gv~v~~g~~~~--~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
...+...+.+.| +++||.+.++..+. .+.++||++....++.+...++|+
T Consensus 298 ~~~~~~~~~~~l-~~~gi~i~~~~~~~~~~~~~iRi~~~~~~~~i~~~~~al~ 349 (350)
T cd00609 298 EGDDEEFLERLL-LEAGVVVRPGSAFGEGGEGFVRLSFATPEEELEEALERLA 349 (350)
T ss_pred CCChHHHHHHHH-HhCCEEEecccccccCCCCeEEEEeeCCHHHHHHHHHHhh
Confidence 443444455555 56799998775443 567899998777444455555543
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=215.62 Aligned_cols=303 Identities=10% Similarity=0.117 Sum_probs=213.6
Q ss_pred CCCChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcc
Q 017726 17 PVHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF 95 (367)
Q Consensus 17 p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~ 95 (367)
|.+.|+.+.+++.+.... .+++. ....++|+.++++++++++ +|++|+|+++++..++.++ .+ +.|+++.|.|.
T Consensus 30 ~~~~p~~~~~a~~~~~~~~~~Y~~--~~~~~lr~~ia~~~~~~~~-~i~it~Ga~~~l~~~~~~~-~~-~~v~i~~P~y~ 104 (354)
T PRK06358 30 PLGVPESLKQAITENLDKLVEYPD--PDYLELRKRIASFEQLDLE-NVILGNGATELIFNIVKVT-KP-KKVLILAPTFA 104 (354)
T ss_pred CCCCCHHHHHHHHHHHHhhhcCCC--ccHHHHHHHHHHHhCCChh-hEEECCCHHHHHHHHHHHh-CC-CcEEEecCChH
Confidence 445678888888875332 22233 2367999999999998764 5999999999999988875 44 68999999766
Q ss_pred hHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCCCc
Q 017726 96 SLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPA 170 (367)
Q Consensus 96 ~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~ 170 (367)
.+ ...++..|.+++.++.+.+ +.+| +++.+.+. .+++++++++|+||||.+++ +++|.++|++ +++
T Consensus 105 ~~--~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~----~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~--~~~ 175 (354)
T PRK06358 105 EY--ERALKAFDAEIEYAELTEETNFAAN-EIVLEEIK----EEIDLVFLCNPNNPTGQLISKEEMKKILDKCEK--RNI 175 (354)
T ss_pred HH--HHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhc----cCCCEEEEeCCCCCCCCccCHHHHHHHHHHHHh--cCC
Confidence 53 3556788999999998643 4678 66666665 36799999999999999997 5667777888 999
Q ss_pred EEEEeeeeccCceee---c----cccccceEEEecCCCccc-CCCcceeeeeC-HHHHHHhccCCCCceeechHHHHHHh
Q 017726 171 LFLVDGVSSICAIDF---R----MDEWGIDVALTGSQKALS-LPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFY 241 (367)
Q Consensus 171 ~vi~D~~~~~~~~~~---~----~~~~~~d~~~~s~~K~~~-g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (367)
++|+|++|......- + .......+++.|++|.++ ...++|+++++ +.+++.+.....
T Consensus 176 ~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~~~-------------- 241 (354)
T PRK06358 176 YLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMRE-------------- 241 (354)
T ss_pred EEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCC--------------
Confidence 999999986433210 1 111234588999999985 23446999885 677676654311
Q ss_pred hcCCccCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCCH
Q 017726 242 NLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINS 319 (367)
Q Consensus 242 ~~~~~~~~~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (367)
.++.+.....+...++. +.. +++.++.+.++++.+.+.|++. |+.+..+ .+ .+++++++ +.
T Consensus 242 ------~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~----~g-~f~~~~~~---~~ 304 (354)
T PRK06358 242 ------PWSINTFADLAGQTLLD---DKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKP----SV-NFIFFKLE---KP 304 (354)
T ss_pred ------CCcchHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCC----cc-eEEEEEcC---ch
Confidence 22344433334444442 211 5677788899999999999887 7666665 34 36778875 34
Q ss_pred HHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 320 SEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 320 ~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
.++++.|.+ +||.+++|... ..+.++||+ .+..++.+.+..+|.+
T Consensus 305 ~~~~~~l~~-~gI~v~~~~~f~~~~~~~iRls-~~~~~~~~~l~~~l~~ 351 (354)
T PRK06358 305 IDLRKELLK-KGILIRSCSNYRGLDENYYRVA-VKSREDNKKLLKALEV 351 (354)
T ss_pred HHHHHHHHH-CCeEEEECCCCCCCCCCEEEEE-eCCHHHHHHHHHHHHH
Confidence 789999976 59999998553 234689999 5666666666666654
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-27 Score=217.72 Aligned_cols=313 Identities=14% Similarity=0.133 Sum_probs=220.5
Q ss_pred CCCCCcccccCCCCCChHHHHHHHccCCCC-CCCC---cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc
Q 017726 5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNED-YRSP---AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT 80 (367)
Q Consensus 5 ~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~-~~~~---~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~ 80 (367)
+.-+|.|+....-+.+-+.+.+++.+.... +.+. .......++++.+++++|.+. +++++||++|+..++.++
T Consensus 58 ~~~~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~---~~~~~sG~~An~~~l~~l 134 (407)
T PRK07179 58 ILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGFES---CLLCQSGWAANVGLLQTI 134 (407)
T ss_pred EeecCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCCCc---EEEECCHHHHHHHHHHHh
Confidence 445677777776555666666666654322 1111 112467789999999999754 577899999999999999
Q ss_pred CCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHH
Q 017726 81 LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVR 160 (367)
Q Consensus 81 ~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~ 160 (367)
..+||.|++...+|.+.. ..++..|+++..++. .|+++++++++++ ++++|++++++||+|.+.|+++|.
T Consensus 135 ~~~g~~v~~~~~~h~s~~--~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~---~~~lV~v~~v~n~tG~i~pl~~I~ 204 (407)
T PRK07179 135 ADPNTPVYIDFFAHMSLW--EGVRAAGAQAHPFRH-----NDVDHLRRQIERH---GPGIIVVDSVYSTTGTIAPLADIV 204 (407)
T ss_pred CCCCCEEEEECCcCHHHH--HHHHHCCCeEEEecC-----CCHHHHHHHHHhc---CCeEEEECCCCCCCCccccHHHHH
Confidence 999999999888777653 334567777665543 4899999999742 468999999999999999999999
Q ss_pred HHHHhcCCCcEEEEeeeeccCcee---------eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCcee
Q 017726 161 KLLDEYRHPALFLVDGVSSICAID---------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF 231 (367)
Q Consensus 161 ~~~~~~~~~~~vi~D~~~~~~~~~---------~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~ 231 (367)
++|++ +|+++|+|++|+.+... ++.. .++|+++.|++|+++ ++ +|++++++++++.+.....+. .
T Consensus 205 ~l~~~--~~~~livDea~~~g~~g~~g~g~~~~~~~~-~~vdi~~~S~sK~~g-~~-~G~l~~~~~~~~~~~~~~~~~-~ 278 (407)
T PRK07179 205 DIAEE--FGCVLVVDESHSLGTHGPQGAGLVAELGLT-SRVHFITASLAKAFA-GR-AGIITCPRELAEYVPFVSYPA-I 278 (407)
T ss_pred HHHHH--cCCEEEEECcccccCcCCCCCchHHhcCCC-CCCCEEEeechHhhh-cc-CeEEEeCHHHHHHHHHhCcCe-e
Confidence 99999 99999999999865431 1111 246999999999996 44 699999998877664321110 0
Q ss_pred echHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEE
Q 017726 232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAV 311 (367)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 311 (367)
+..+.+...++++.++++.+.+. ++.+++++++++++.+.|+++|+++.+. + .++.+
T Consensus 279 ---------------~~~t~~~~~~aa~~aal~~~~~~--~~~~~~l~~~~~~l~~~L~~~g~~v~~~-----~-~i~~l 335 (407)
T PRK07179 279 ---------------FSSTLLPHEIAGLEATLEVIESA--DDRRARLHANARFLREGLSELGYNIRSE-----S-QIIAL 335 (407)
T ss_pred ---------------eCCCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCCCCCC-----C-CEEEE
Confidence 12234555556677777776443 5677899999999999999988876642 3 46667
Q ss_pred EcCCCCCHHHHHHHHHhhCCeEEccCCCC---CCCcEEEEeecCCCCHHHHH
Q 017726 312 IVPSHINSSEIVRRAWQRYNLSLGLGLNK---VAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 312 ~~~~~~~~~~l~~~L~~~~gv~v~~g~~~---~~~~~iRi~~~~~~~~~~~~ 360 (367)
.++...+...+.+.|.+ +||.+.....+ ....++||++....+++|+.
T Consensus 336 ~~~~~~~~~~~~~~L~~-~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~ 386 (407)
T PRK07179 336 ETGSERNTEVLRDALEE-RNVFGAVFCAPATPKNRNLIRLSLNADLTASDLD 386 (407)
T ss_pred EeCCHHHHHHHHHHHHH-CCceEeeecCCCCCCCCceEEEEECCCCCHHHHH
Confidence 66432345667778865 49974422111 22467999998877665544
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=224.45 Aligned_cols=282 Identities=13% Similarity=0.070 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHHhc------CC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHH-HhCCceEEE
Q 017726 42 ALTKTLLEDIKKIFK------TT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQ-RLNFNVDVV 113 (367)
Q Consensus 42 ~~~~~~~~~la~~~~------~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-~~g~~~~~v 113 (367)
.+..++|+.++++++ .+ ++++|++|+|+++++..++.++++|||.|+++.|.|..+. ..++ ..|++++.+
T Consensus 94 ~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~--~~~~~~~G~~vv~v 171 (496)
T PLN02376 94 HGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFD--RDLRWRTGVEIIPV 171 (496)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCCCCCEEEECCCCccchH--HHHHhhCCCEEEEE
Confidence 445678888888876 21 3356999999999999999999999999999999777653 2234 579999999
Q ss_pred eCC--CCCCCCHHHHHHHHhc---cCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccCcee-
Q 017726 114 ESD--WGEGAKLDVLASKLAA---DTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAID- 184 (367)
Q Consensus 114 ~~~--~~~~~d~e~l~~~i~~---~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~- 184 (367)
+++ .++.+|++.++++++. .. .++|+|++++|+||||.+++ +++|.++|++ ++++||+|++|+.....
T Consensus 172 ~~~~~~~~~~~~~~le~a~~~a~~~~-~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~--~~i~lI~DEiY~~~~f~~ 248 (496)
T PLN02376 172 PCSSSDNFKLTVDAADWAYKKAQESN-KKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTR--KNIHLVVDEIYAATVFAG 248 (496)
T ss_pred eCCCCccCcCCHHHHHHHHHHHHhcC-CCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHH--cCCEEEEEcCccccccCC
Confidence 985 3467899999876532 11 47899999999999999998 4557778888 99999999999753211
Q ss_pred ---ec---cc-c-----c--cceEEEecCCCccc-CCCcceeeeeCHH-HHHHhccCCCCceeechHHHHHHhhcCCccC
Q 017726 185 ---FR---MD-E-----W--GIDVALTGSQKALS-LPTGMGIVCASPK-ALEASKTAKSVRVFFDWKDYIKFYNLGTFWP 248 (367)
Q Consensus 185 ---~~---~~-~-----~--~~d~~~~s~~K~~~-g~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (367)
.+ .. . . ..-+++.|+||.++ ...++|+++..++ +.+.+.... . .
T Consensus 249 ~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~------------------~--~ 308 (496)
T PLN02376 249 GDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMS------------------S--F 308 (496)
T ss_pred CCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHHh------------------h--c
Confidence 11 10 0 0 12245789999984 2234699998544 443332110 0 1
Q ss_pred CCCcHHHHHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCC-------H
Q 017726 249 YTPSIQLLYGLRAALDLIF--EEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHIN-------S 319 (367)
Q Consensus 249 ~~~~~~~~~al~~al~~~~--~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 319 (367)
+..+.....++...+..-. +.-+++.++++.+..+.+.+.|++.|+++..+ .++.++|++++...+ .
T Consensus 309 ~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~gi~~~~~----~aG~flwi~l~~~~~~~~~~~~e 384 (496)
T PLN02376 309 GLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKADIACLTS----NAGLFAWMDLRHLLRDRNSFESE 384 (496)
T ss_pred CCCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC----CceEEEEEEchhhhccCCchhHH
Confidence 1233333233333332111 11145567788888999999999888887666 567788999854322 2
Q ss_pred HHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecC
Q 017726 320 SEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLG 352 (367)
Q Consensus 320 ~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~ 352 (367)
.++.+.|.++.||.+.||..+ ..+++|||++..
T Consensus 385 ~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~ 419 (496)
T PLN02376 385 IELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFAN 419 (496)
T ss_pred HHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeC
Confidence 578888887789999998554 235689999754
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=220.20 Aligned_cols=290 Identities=20% Similarity=0.143 Sum_probs=214.8
Q ss_pred CCcHHHHHHHHHHHHHHHhc----CC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceE
Q 017726 37 SPAVPALTKTLLEDIKKIFK----TT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVD 111 (367)
Q Consensus 37 ~~~~~~~~~~~~~~la~~~~----~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~ 111 (367)
.+....+..++|+.+++++. .. .+++|++|+|+++|+.+++..+++|||.|++.+|+|++.. .+.+..|+++.
T Consensus 127 ~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~--~~~~~~g~~~~ 204 (459)
T COG1167 127 QYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGAL--QALEALGARVI 204 (459)
T ss_pred cCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHH--HHHHHcCCcEE
Confidence 33444556677777777764 33 3346999999999999999999999999999999988754 66788999999
Q ss_pred EEeCCCCCCCCHHHHHHHHhccCCCCccEEEE-EecCCCccccccH---HHHHHHHHhcCCCcEEEEeeeeccCcee---
Q 017726 112 VVESDWGEGAKLDVLASKLAADTAHTIKAICI-VHNETATGVTNNL---SKVRKLLDEYRHPALFLVDGVSSICAID--- 184 (367)
Q Consensus 112 ~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~-~~~~n~tG~~~~~---~~i~~~~~~~~~~~~vi~D~~~~~~~~~--- 184 (367)
.||+++ ..+|+|++++.+.. .++|++++ .+.+||||.+++. ++|.++|++ +|++||+|+.++.....
T Consensus 205 ~vp~d~-~G~~~e~le~~~~~---~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~--~~~~IIEDD~y~el~~~~~p 278 (459)
T COG1167 205 PVPVDE-DGIDPEALEEALAQ---WKPKAVYVTPTFQNPTGVTMSLERRKALLALAEK--YDVLIIEDDYYGELRYDGPP 278 (459)
T ss_pred ecCCCC-CCCCHHHHHHHHhh---cCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHH--cCCeEEeeCcchhhhcCCCC
Confidence 999984 45899999999986 36788855 4677999999985 469999999 99999999998754332
Q ss_pred ----eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHH
Q 017726 185 ----FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLR 260 (367)
Q Consensus 185 ----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 260 (367)
...+..+..++++|+||+++...++||+++++++++++..... .. ...++.....++.
T Consensus 279 ~~~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~~~~~~~~~~k~-------------~~-----~~~~s~~~Q~~la 340 (459)
T COG1167 279 PPPLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPPELIEKLLRLKQ-------------AA-----DLGPSSLSQAALA 340 (459)
T ss_pred CCChHhhCCCCCEEEEeeehhhcccccceeeeeCCHHHHHHHHHHHH-------------Hh-----cCCCChHHHHHHH
Confidence 1122336789999999999766778999999999888874321 11 1123333222222
Q ss_pred HHHHH--HHHhChHHHHHHHHHHHHHHHHHHHHc-C--CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEc
Q 017726 261 AALDL--IFEEGLENVIERHRRLGKATRLAVEAW-G--LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLG 335 (367)
Q Consensus 261 ~al~~--~~~~g~~~~~~~~~~~~~~l~~~L~~~-g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~ 335 (367)
.-+.. +.+ -++++++.+.+.++.+.+.|++. + ..+..+ .++.++|++++++.+..++.+.+.++ ||.+.
T Consensus 341 ~~l~~G~~~~-hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p----~gG~flwl~l~~~~~~~~l~~~a~~~-gv~i~ 414 (459)
T COG1167 341 AFLLSGHYDR-HLRRLRREYARRRDALLEALAEYLPELATWTRP----EGGLFLWLELPEGIDARELLAAALEK-GVVVT 414 (459)
T ss_pred HHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecC----CceEEEEEEcCCCCCHHHHHHHHHHC-CCEEE
Confidence 22221 111 17788999999999999999996 2 455555 57789999999888999999999765 99888
Q ss_pred c-CCCCCC----CcEEEEeecCCCCHHHH
Q 017726 336 L-GLNKVA----GKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 336 ~-g~~~~~----~~~iRi~~~~~~~~~~~ 359 (367)
+ |..+.. .+.||+|+.. .+++++
T Consensus 415 ~~g~~f~~~~~~~~~~Rl~~s~-~~~e~i 442 (459)
T COG1167 415 PLGSAFSADGDPRNGLRLSFSS-PSEEEI 442 (459)
T ss_pred cCCccccCCCCCCCeEEEEcCC-CCHHHH
Confidence 8 744332 3479999644 434333
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-27 Score=212.97 Aligned_cols=303 Identities=18% Similarity=0.157 Sum_probs=213.2
Q ss_pred ChHHHHHHHccCCCC----CCC----CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 20 IPDQVIRAMNRNNED----YRS----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~----~~~----~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
.++++.+++.+.... ..+ ++......++++.++++++.+ +.++++ +|++++..++.+++.+||.|++.+
T Consensus 31 ~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~--~~i~~~-~G~~~~~~~l~~~~~~gd~v~~~~ 107 (360)
T TIGR00858 31 SHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTE--AALLFS-SGYLANVGVISALVGKGDLILSDA 107 (360)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCC--CEEEEC-chHHHHHHHHHHhCCCCCEEEEEc
Confidence 345666666654321 111 223456788999999999854 345554 557777667777889999999998
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcE
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPAL 171 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~ 171 (367)
+.|++.. ..++..|.+++.++. +|++++++.+++++.+++++|++++++|++|...|+++|.++|++ +|++
T Consensus 108 ~~~~~~~--~~~~~~g~~~~~~~~-----~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~--~~~~ 178 (360)
T TIGR00858 108 LNHASLI--DGCRLSGARVRRYRH-----NDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAER--YGAW 178 (360)
T ss_pred cccHHHH--HHHHhcCCceEEecC-----CCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcCHHHHHHHHHH--cCcE
Confidence 8776643 445677888887764 488999999875321357899999999999999999999999999 9999
Q ss_pred EEEeeeeccCceeec---------cccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhh
Q 017726 172 FLVDGVSSICAIDFR---------MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYN 242 (367)
Q Consensus 172 vi~D~~~~~~~~~~~---------~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (367)
+|+|++|+.+....+ ....+.++++.|++|+++ +.| |++++++++++++...... ...
T Consensus 179 li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~-~~g-G~~~~~~~~~~~~~~~~~~-~~~---------- 245 (360)
T TIGR00858 179 LMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALG-SYG-AYVAGSQALIDYLINRART-LIF---------- 245 (360)
T ss_pred EEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhh-ccC-cEEEcCHHHHHHHHHhCcc-cee----------
Confidence 999999986543211 112357899999999995 666 8999999888776432110 000
Q ss_pred cCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHH
Q 017726 243 LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEI 322 (367)
Q Consensus 243 ~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (367)
..+.+...++++.++++.+.. .++.++++.++++++.+.|+++++++..+ .+.++++.++...+..++
T Consensus 246 -----~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 313 (360)
T TIGR00858 246 -----STALPPAVAAAALAALELIQE--EPWRREKLLALIARLRAGLEALGFTLMPS-----CTPIVPVIIGDNASALAL 313 (360)
T ss_pred -----cCCCCHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHHHHHcCCccCCC-----CCCEEEEEeCCHHHHHHH
Confidence 112344455666677766543 35678899999999999999988776543 344677877544456789
Q ss_pred HHHHHhhCCeEEccCCCC---CCCcEEEEeecCCCCHHHHH
Q 017726 323 VRRAWQRYNLSLGLGLNK---VAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 323 ~~~L~~~~gv~v~~g~~~---~~~~~iRi~~~~~~~~~~~~ 360 (367)
.++|.+ +||.+.++..+ ..+.++||++...++.+++.
T Consensus 314 ~~~l~~-~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~ 353 (360)
T TIGR00858 314 AEELQQ-QGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDID 353 (360)
T ss_pred HHHHHH-CCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHH
Confidence 999965 59999864322 22357999988766655443
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=221.20 Aligned_cols=307 Identities=16% Similarity=0.110 Sum_probs=201.3
Q ss_pred CChHHHHHHHccCCCC------CCCCcHHHHHHHHHHHHHHHh---cCCCCceEEecCChhHHHHHHHHccCCCCCeEEE
Q 017726 19 HIPDQVIRAMNRNNED------YRSPAVPALTKTLLEDIKKIF---KTTSGTPFLIPTTGTGAWESALTNTLSPGDRIIS 89 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~------~~~~~~~~~~~~~~~~la~~~---~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~ 89 (367)
++++.+.+++.+.... ..+|.......++|+.+++++ ++++ ++|++|+|+++++..+. .++.+||.|++
T Consensus 46 ~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~~~~~-d~I~it~Ga~~al~~l~-~l~~~gd~Vlv 123 (402)
T TIGR03542 46 PLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRGRIDP-EEIFISDGAKCDVFRLQ-SLFGSDNTVAV 123 (402)
T ss_pred CCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhcCCCH-HHEEECCCcHHHHHHHH-HhcCCCCEEEE
Confidence 4566667766653221 233444466778999999976 5545 46999999999998764 55689999999
Q ss_pred EeCCcchHHHHHHHHHhCC-----------ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---
Q 017726 90 FLIGQFSLLWIDQQQRLNF-----------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN--- 155 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~-----------~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~--- 155 (367)
++|+|..+ ...++..|+ +++.++.+.+..++++ +++ . +++++|++++||||||.+++
T Consensus 124 ~~P~y~~~--~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~--~----~~~~~i~l~nP~NPTG~~~s~~~ 194 (402)
T TIGR03542 124 QDPVYPAY--VDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPD-LPE--E----PKIDIIYLCSPNNPTGTVLTKEQ 194 (402)
T ss_pred eCCCCcch--HHHHHHcCCccccccccccceEEEeecchhhCCCCC-ccc--c----CCceEEEEeCCCCCCCccCCHHH
Confidence 99987764 356777888 8888887643223222 111 1 36799999999999999998
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeeccCce----eecc---cc-ccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccC
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSSICAI----DFRM---DE-WGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTA 225 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~~~~~----~~~~---~~-~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~ 225 (367)
+++|.++|++ ++++||+|++|..... +.+. .. ....+++.|+||.++ .+| +|+++++++++......
T Consensus 195 ~~~l~~~a~~--~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g-~pGlRiG~~i~~~~l~~~~~~~ 271 (402)
T TIGR03542 195 LKELVDYANE--HGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAG-FTGVRLGWTVVPKELTYADGHS 271 (402)
T ss_pred HHHHHHHHHH--cCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccC-CCCcceEEEEecHHHhhcchhh
Confidence 6678888888 9999999999875321 1111 11 124577899999984 444 69999998876211000
Q ss_pred CCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHHcCCccccCCCc
Q 017726 226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG---LENVIERHRRLGKATRLAVEAWGLKNCTQKEE 302 (367)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g---~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 302 (367)
.. ..+..... .. .++++.. +..++...+.+.+ +.+.++.++++++.+.+.|++.|+.+..+
T Consensus 272 ~~-------~~~~~~~~-~~--~~~~s~~---~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~--- 335 (402)
T TIGR03542 272 VI-------QDWERRQC-TK--FNGASYP---VQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAAGFKVYGG--- 335 (402)
T ss_pred HH-------HHHHHHhh-hc--ccCCCHH---HHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhcCceecCC---
Confidence 00 00000000 10 1123332 2222333333221 44556778888999999999888766554
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCCCCH
Q 017726 303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNE 356 (367)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~~~~ 356 (367)
.++.++|++++...+..++.+.|.+++||.+.+|..+ ...+++||++....+.
T Consensus 336 -~~~~f~~v~l~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~ 390 (402)
T TIGR03542 336 -EHAPYLWVKTPEGISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFGKREN 390 (402)
T ss_pred -CceeEEEEECCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHH
Confidence 3566889999766778899999987779999998543 2347899996554333
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-27 Score=231.43 Aligned_cols=317 Identities=15% Similarity=0.118 Sum_probs=221.4
Q ss_pred CCCCChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhcCCCC--ceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 16 GPVHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKTTSG--TPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~--~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
.+.++|+.+.+++.+.... ...+...+....+++++++.+|.+.. ++|++++|+++++..++.++++|||.|+++.|
T Consensus 707 ~d~ppPp~V~eAi~eal~~~~~s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl~pGD~VLVp~P 786 (1082)
T PLN02672 707 SFLPVPSAVKASIFESFVRQNISESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCVQEGGTLCFPAG 786 (1082)
T ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 3456788888888764322 22222345578899999999898643 46999999889999999999999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecC-CCcccccc---HHHHHHHHHhc
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNE-TATGVTNN---LSKVRKLLDEY 166 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~-n~tG~~~~---~~~i~~~~~~~ 166 (367)
.|+.+. ..++..|++++.++++. ++.+|++++++++++. +.++|++++|+ ||||.+++ +++|.++|++
T Consensus 787 tY~~Y~--~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~---~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k- 860 (1082)
T PLN02672 787 SNGTYV--SAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETV---KKPWVYISGPTINPTGLLYSNSEIEEILSVCAK- 860 (1082)
T ss_pred ChHHHH--HHHHHcCCEEEEEecccccCCCCCHHHHHHHhccC---CCCEEEEECcCCCCcCccCCHHHHHHHHHHHHH-
Confidence 776643 55788999999999864 4678899999998641 34689999997 99999997 5567777888
Q ss_pred CCCcEEEEeeeeccCceee------ccc----c------ccceEEEecCCCcccCCCc--ceeeeeCHH-HHHHhccCCC
Q 017726 167 RHPALFLVDGVSSICAIDF------RMD----E------WGIDVALTGSQKALSLPTG--MGIVCASPK-ALEASKTAKS 227 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~~~------~~~----~------~~~d~~~~s~~K~~~g~~g--~g~~~~~~~-~~~~~~~~~~ 227 (367)
+|++||+|++|+...... +.. . ....+++.|+||.++ .+| +|+++++++ +++.+.....
T Consensus 861 -~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~-lpGLRIGylIap~~eLi~~l~~~~~ 938 (1082)
T PLN02672 861 -YGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELL-SGGHEFGFLALNDSVLIDAFHSAPG 938 (1082)
T ss_pred -cCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhc-cHHHHheeEEeCCHHHHHHHHHhhh
Confidence 999999999996322210 000 0 013578889998874 555 699998654 7777754210
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHH------hChHHHHHHHHHHHHHHHHHHHHcCCccccCCC
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFE------EGLENVIERHRRLGKATRLAVEAWGLKNCTQKE 301 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~------~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 301 (367)
... +......++.+++..+.. ..+++.++.++++++++.+.|++.|+.+..+
T Consensus 939 ---------------~s~-----~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~Gi~v~~P-- 996 (1082)
T PLN02672 939 ---------------LSR-----PHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEACGWDVLEP-- 996 (1082)
T ss_pred ---------------hcC-----CCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHCCCeEecC--
Confidence 010 111122344444443321 1256677789999999999999998887776
Q ss_pred ccCCCceEEEEcCC-----------------CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhh
Q 017726 302 EWFSDTVTAVIVPS-----------------HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 302 ~~~~~~~~~~~~~~-----------------~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
.+++++|++++. +.+..+++++|.++.||.+.+|.....++++||++....+..+...+.|
T Consensus 997 --eGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIsfa~~~e~LeeALerL 1074 (1082)
T PLN02672 997 --QGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFSFALEDSEFDRALKAI 1074 (1082)
T ss_pred --CcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEEecCCHHHHHHHHHHH
Confidence 567777776421 2467889999998889999999654446789999765333333333333
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=212.51 Aligned_cols=275 Identities=12% Similarity=0.079 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCC
Q 017726 43 LTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAK 122 (367)
Q Consensus 43 ~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d 122 (367)
...++|+.+++++|.++.+ |++|+|+++++..++. ++.+| .|++++|.|+.+ ...++..|++++.+|++. ...|
T Consensus 41 ~~~~lr~~ia~~~~~~~~~-I~it~Gs~~~l~~~~~-~~~~~-~vv~~~P~y~~y--~~~~~~~G~~v~~vp~~~-~~~~ 114 (332)
T PRK06425 41 SYTDIEDQIKIYTQGLKIK-VLIGPGLTHFIYRLLS-YINVG-NIIIVEPNFNEY--KGYAFTHGIRISALPFNL-INNN 114 (332)
T ss_pred CHHHHHHHHHHHhCCCcce-EEECCCHHHHHHHHHH-HhCCC-cEEEeCCChHHH--HHHHHHcCCeEEEEeCCc-ccCc
Confidence 4679999999999998654 9999999999999886 46776 577778866553 466888999999999864 3345
Q ss_pred HHHHHHHHhccCCCCccEEEEEecCCCccccccH---HHHHHHHHhcCCCcEEEEeeeeccCceee-----cc-ccccce
Q 017726 123 LDVLASKLAADTAHTIKAICIVHNETATGVTNNL---SKVRKLLDEYRHPALFLVDGVSSICAIDF-----RM-DEWGID 193 (367)
Q Consensus 123 ~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~---~~i~~~~~~~~~~~~vi~D~~~~~~~~~~-----~~-~~~~~d 193 (367)
.+.++ + .++|+|++|+||||||.+++. ++|.++|++ ++++||+|+++....... .. ...+..
T Consensus 115 ~~~l~----~---~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~--~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~v 185 (332)
T PRK06425 115 PEILN----N---YNFDLIFIVSPDNPLGNLISRDSLLTISEICRK--KGALLFIDEAFIDFVPNRAEEDVLLNRSYGNV 185 (332)
T ss_pred HHHHh----h---cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHH--cCCEEEEecchhccccccchhHHHHhccCCCE
Confidence 44443 1 367999999999999999985 456666777 999999999987543211 11 112356
Q ss_pred EEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC-
Q 017726 194 VALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG- 270 (367)
Q Consensus 194 ~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g- 270 (367)
+++.|+||.++ .+| +|++++++++++++..... +++.+... + .++.......
T Consensus 186 i~~~SfSK~~~-l~GlRiGy~v~~~~li~~l~~~~~--------------------~~~~~~~~---~-~~l~~~~~~~~ 240 (332)
T PRK06425 186 IIGRSLTKILG-IPSLRIGYIATDDYNMKISRKITE--------------------PWSVCDPA---I-DFIRSIDLDYV 240 (332)
T ss_pred EEEeecHHhcC-CchhhheeeecCHHHHHHHHHcCC--------------------CCccCHHH---H-HHHHHhhhHHH
Confidence 88899999985 444 6999999999888764311 22233221 1 1222111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEE
Q 017726 271 LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRI 348 (367)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi 348 (367)
+++.++.++++++.+.+.|+++|+.+..+ ..+.+++++++ +..++.+.|.+ +||.++++..+ ..++++||
T Consensus 241 ~~~~~~~~~~~r~~l~~~L~~~g~~~~~~----~~g~f~~~~~~---~~~~~~~~l~~-~gi~v~~~~~f~~~~~~~iRi 312 (332)
T PRK06425 241 AKHSLDIMENERSYLINNLEAMGFRAAGD----PSANFITFMIP---DAHDFYSYLLK-NGILVRLLDDYECLGEQYIRI 312 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEECCC----CCceEEEEEcC---CHHHHHHHHHH-CCeEEEECCCCCCCCCCEEEE
Confidence 45678888999999999999988776543 23446778875 67899999976 49999988543 22468999
Q ss_pred eecCCCCHHHHHHhhhhc
Q 017726 349 GHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 349 ~~~~~~~~~~~~~~~l~~ 366 (367)
++ +..++.+.+.++|++
T Consensus 313 s~-~~~~~~~~l~~al~~ 329 (332)
T PRK06425 313 AI-RRRSFNIKLVNALRN 329 (332)
T ss_pred Ee-CCHHHHHHHHHHHHH
Confidence 95 566677777777764
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=213.26 Aligned_cols=308 Identities=13% Similarity=0.060 Sum_probs=206.8
Q ss_pred CCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcc
Q 017726 16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF 95 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~ 95 (367)
.|.++++.+++++.+.......+.......++++.+++++| + +++++++||++++..++.+++.+||.|+++++.|.
T Consensus 6 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~~a~~~g-~--~~~~~~~~gt~a~~~~~~~l~~~gd~v~~~~~~~~ 82 (338)
T cd06502 6 TVTGPTPEMLEAMAAANVGDDVYGEDPTTAKLEARAAELFG-K--EAALFVPSGTAANQLALAAHTQPGGSVICHETAHI 82 (338)
T ss_pred cCCCCCHHHHHHHHhcccCCcccCCCHHHHHHHHHHHHHhC-C--CeEEEecCchHHHHHHHHHhcCCCCeEEEecCcce
Confidence 45667888999998754332233334678899999999999 3 24788899999999999999999999999999877
Q ss_pred hHHH-HHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccC---CCCccEEEEEecCCCccccc---cHHHHHHHHHhcCC
Q 017726 96 SLLW-IDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT---AHTIKAICIVHNETATGVTN---NLSKVRKLLDEYRH 168 (367)
Q Consensus 96 ~~~~-~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~---~~~~~lv~~~~~~n~tG~~~---~~~~i~~~~~~~~~ 168 (367)
+... ...+...|++++.++.+. +.+|++++++++++.. .+++++|++++|+|| |.++ ++++|.++|++ +
T Consensus 83 ~~~~~~~~~~~~g~~~~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~~~~--~ 158 (338)
T cd06502 83 YTDEAGAPEFLSGVKLLPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAISALAKE--N 158 (338)
T ss_pred eeecCCcHHHHcCceEEeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHHHHHHH--c
Confidence 6431 123455799999999764 6789999999997421 036799999999998 5443 56778999998 9
Q ss_pred CcEEEEeeeeccCc-----eeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhc
Q 017726 169 PALFLVDGVSSICA-----IDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL 243 (367)
Q Consensus 169 ~~~vi~D~~~~~~~-----~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (367)
|+++++|++|..+. ..+.....++|+++.|+||+++++ |.++++.++++++++..... ..
T Consensus 159 ~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~-~g~~~~~~~~~~~~~~~~~~--------------~~ 223 (338)
T cd06502 159 GLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAP-VGAVVVGNRDFIARARRRRK--------------QA 223 (338)
T ss_pred CCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCc-cceEEECCHHHHHHHHHHHH--------------Hh
Confidence 99999999874321 111111236789999999999644 43566788888887764210 00
Q ss_pred CCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCC-CHHHH
Q 017726 244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI-NSSEI 322 (367)
Q Consensus 244 ~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 322 (367)
+. .++.+. ....+++..+...+..+..++..++++++.+.|+++|+.+..+ ..+ ++.++.+.+. ...++
T Consensus 224 ~~--~~~~~~---~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~----~~~-~~~v~~~~~~~~~~~l 293 (338)
T cd06502 224 GG--GMRQSG---FLAAAGLAALENDLWLRRLRHDHEMARRLAEALEELGGLESEV----QTN-IVLLDPVEANAVFVEL 293 (338)
T ss_pred CC--ChhhHH---HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcCCCcccc----cCC-eEEEecCCccHHHHHH
Confidence 11 111222 1223344444443455667888899999999999987755443 333 5566653221 12233
Q ss_pred HHHHHh--hCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 323 VRRAWQ--RYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 323 ~~~L~~--~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
.+.+.+ ++|+.+.+.. ..++|+++...++.+|+
T Consensus 294 ~~~l~~~~~~gi~~~~~~----~~~lRi~~~~~~~~~~i 328 (338)
T cd06502 294 SKEAIERRGEGVLFYAWG----EGGVRFVTHWDTTEEDV 328 (338)
T ss_pred HHHHHHhhhCCEEEEecC----CCeEEEEeecCCCHHHH
Confidence 333321 4588887642 26899998766555443
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-27 Score=215.53 Aligned_cols=321 Identities=17% Similarity=0.138 Sum_probs=210.7
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCCC----CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC--
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNEDY----RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-- 81 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~~----~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~-- 81 (367)
+|.|+-.+.++.+-+++.+++.+..... ..++..+...++++.+++++|.+ +.+++ ++|++++..++..+.
T Consensus 53 sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~~--~~i~~-~sG~~a~~~~i~~l~~~ 129 (410)
T PRK13392 53 SNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKE--SALLF-TSGYVSNDAALSTLGKL 129 (410)
T ss_pred CCCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCCC--CEEEE-CcHHHHHHHHHHHHhcC
Confidence 3555544434334444444444433211 11223345779999999999964 33444 667888887776553
Q ss_pred CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHH
Q 017726 82 SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRK 161 (367)
Q Consensus 82 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~ 161 (367)
.+|+.|++....|++.. ..++..|.++..++.+ |.+++++.++....+++++|++++|+||+|.+.|+++|.+
T Consensus 130 ~~g~~vi~~~~~h~s~~--~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~ 202 (410)
T PRK13392 130 LPGCVILSDALNHASMI--EGIRRSGAEKQVFRHN-----DLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICD 202 (410)
T ss_pred CCCCEEEEehhhhHHHH--HHHHHcCCeEEEEeCC-----CHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHHHHH
Confidence 47887777655555542 3466778887776532 5666777665432247899999999999999999999999
Q ss_pred HHHhcCCCcEEEEeeeeccCceeec------c--ccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeec
Q 017726 162 LLDEYRHPALFLVDGVSSICAIDFR------M--DEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFD 233 (367)
Q Consensus 162 ~~~~~~~~~~vi~D~~~~~~~~~~~------~--~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 233 (367)
+|++ +|+++++|++|+.+..... . .....|+++.|++|+++ ..| |++++++++++.+.....+ +.+
T Consensus 203 l~~~--~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g-~~G-G~~~~~~~~~~~l~~~~~~-~~~- 276 (410)
T PRK13392 203 LADR--YNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFG-CLG-GYIAASADLIDFVRSFAPG-FIF- 276 (410)
T ss_pred HHHH--cCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhh-ccc-chhhcCHHHHHHHHHhCcc-hhc-
Confidence 9999 9999999999985543110 0 01146899999999995 555 8888999988866543211 000
Q ss_pred hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEc
Q 017726 234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIV 313 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 313 (367)
....+...++++.++++.+... ...++++.++++++.+.|+++|+++..+ .++ ++.+.+
T Consensus 277 --------------s~~~~~~~~~a~~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~-~~~i~~ 335 (410)
T PRK13392 277 --------------TTALPPAVAAGATAAIRHLKTS--QTERDAHQDRVAALKAKLNANGIPVMPS----PSH-IVPVMV 335 (410)
T ss_pred --------------cCcCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCCCCCC----CCC-EEEEEe
Confidence 1123444556777788776554 3456778899999999999999877654 333 444555
Q ss_pred CCCCCHHHHHHHHHhhCCeEEccCCCC---CCCcEEEEeecCCCCHHH--HHHhhhh
Q 017726 314 PSHINSSEIVRRAWQRYNLSLGLGLNK---VAGKVFRIGHLGHLNEVM--FNFQLLF 365 (367)
Q Consensus 314 ~~~~~~~~l~~~L~~~~gv~v~~g~~~---~~~~~iRi~~~~~~~~~~--~~~~~l~ 365 (367)
++..+..+++++|.+++||.+.++..+ ....++||+++...+.+| ...++|+
T Consensus 336 ~~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~ 392 (410)
T PRK13392 336 GDPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALV 392 (410)
T ss_pred CCHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHH
Confidence 433345689999976679999875432 223579999876666554 3444443
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=216.97 Aligned_cols=319 Identities=14% Similarity=0.162 Sum_probs=222.6
Q ss_pred CCCcccccCCC-CCChHHHHHHHccCCCCCC----CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC
Q 017726 7 PGKNHLFVPGP-VHIPDQVIRAMNRNNEDYR----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL 81 (367)
Q Consensus 7 ~~~~~~~~~~p-~~~~~~v~~a~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~ 81 (367)
-+++|+-...+ ..+++.+.+++.++..... .++......++++.+++++|.++ .+++ ++|+.++..++.+++
T Consensus 106 ~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~~--ai~~-~~G~~an~~~i~al~ 182 (489)
T PLN02483 106 GSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKPA--AIVF-GMGYATNSTIIPALI 182 (489)
T ss_pred ecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCCCc--EEEE-CCHHHHHHHHHHHhC
Confidence 35677777765 4567889999999764311 24456788999999999999644 4666 556777777788889
Q ss_pred CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccC---CCC-----ccEE-EEEecCCCccc
Q 017726 82 SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT---AHT-----IKAI-CIVHNETATGV 152 (367)
Q Consensus 82 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~---~~~-----~~lv-~~~~~~n~tG~ 152 (367)
++||.|++.++.|.+.. ..++..|++++.++.+ |.+++++.+++.. .++ .+++ ++....|++|.
T Consensus 183 ~~Gd~Vi~d~~~h~s~~--~~~~~~Ga~v~~~~~~-----d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~ 255 (489)
T PLN02483 183 GKGGLIISDSLNHNSIV--NGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGE 255 (489)
T ss_pred CCCCEEEEcchhhHHHH--HHHHHcCCeEEEEeCC-----CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCc
Confidence 99999999999888754 4577889999999865 5677776665310 022 2545 44455699999
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccCcee---------eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhc
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAID---------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASK 223 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~---------~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~ 223 (367)
+.++++|.++|++ +|+++++|++|+.+... .+....++|++++|++|+++ +.| |++++++++++.+.
T Consensus 256 ~~~l~~I~~la~~--~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g-~~G-G~i~~~~~li~~l~ 331 (489)
T PLN02483 256 LCKLPEIVAVCKK--YKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFG-SCG-GYIAGSKELIQYLK 331 (489)
T ss_pred ccCHHHHHHHHHH--cCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcc-cCc-eEEEcCHHHHHHHH
Confidence 9999999999999 99999999999865421 12222357999999999995 666 99999999998886
Q ss_pred cCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh-C---hHHHHHHHHHHHHHHHHHHHHcCCccccC
Q 017726 224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-G---LENVIERHRRLGKATRLAVEAWGLKNCTQ 299 (367)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-g---~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 299 (367)
....... +..+++...+.+..++++.+... + ..+.+++++++++++++.|+++|+.+..+
T Consensus 332 ~~~~~~~----------------~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~G~~v~~~ 395 (489)
T PLN02483 332 RTCPAHL----------------YATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKMGFEVLGD 395 (489)
T ss_pred HhCcccc----------------ccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence 4321100 01123444444556677766532 1 34567889999999999999998877654
Q ss_pred CCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccC-CC--CCCCcEEEEeecCCCCHHHHH
Q 017726 300 KEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLG-LN--KVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g-~~--~~~~~~iRi~~~~~~~~~~~~ 360 (367)
. ...++++.+....+..++++.|.++ ||.+.+. +. +.....+|+++....+.+|+.
T Consensus 396 ~----~sp~~~l~l~~~~~~~~~~~~Ll~~-GI~v~~~~fp~~p~~~~~vRi~isa~~t~edId 454 (489)
T PLN02483 396 N----DSPVMPIMLYNPAKIPAFSRECLKQ-NVAVVVVGFPATPLLLARARICISASHSREDLI 454 (489)
T ss_pred C----CCCEEEEEECCHHHHHHHHHHHHHC-CcEEeeeCCCCCCCCCceEEEEeCCCCCHHHHH
Confidence 2 2335555553333556899999765 9999853 21 222357999887766555443
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=217.07 Aligned_cols=291 Identities=14% Similarity=0.030 Sum_probs=189.0
Q ss_pred CChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHH----hcCC-CCceEEecCChhHHHHHHHHccC--CCCCeEEEEe
Q 017726 19 HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKI----FKTT-SGTPFLIPTTGTGAWESALTNTL--SPGDRIISFL 91 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~----~~~~-~~~~v~~~~ggt~al~~~~~~~~--~~gd~vl~~~ 91 (367)
+.++.+.+++.+.......|.......++|+.++++ +|.+ .+++|++|+|+++++..++..++ .+||.|+++.
T Consensus 37 ~~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~ 116 (374)
T PRK05839 37 ETPKFIQDALKNNAHLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPN 116 (374)
T ss_pred CCCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhcCCCCCEEEECC
Confidence 456778888776433323333333445666666554 4643 34569999999999988877654 4789999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccH---HHHHHHHHhc
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL---SKVRKLLDEY 166 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~---~~i~~~~~~~ 166 (367)
|.|+.+. ..++..|++++.++.+.+ +.+|+++. .+ +++|+|++++||||||.+++. ++|.++|++
T Consensus 117 P~y~~~~--~~~~~~g~~v~~v~~~~~~~~~~d~~~~--~~-----~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~- 186 (374)
T PRK05839 117 PFYQIYE--GAAIASRAKVLLMPLTKENDFTPSLNEK--EL-----QEVDLVILNSPNNPTGRTLSLEELIEWVKLALK- 186 (374)
T ss_pred CCchhhH--HHHHhcCCEEEEeecccccCCcCCcchh--hh-----ccccEEEEeCCCCCcCcccCHHHHHHHHHHHHH-
Confidence 9776643 456788999999998754 34444332 22 257999999999999999974 556677777
Q ss_pred CCCcEEEEeeeeccCce--ee-cc---------ccccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeec
Q 017726 167 RHPALFLVDGVSSICAI--DF-RM---------DEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFD 233 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~--~~-~~---------~~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 233 (367)
+|++||+|++|..... +. .. ...+.-+++.|+||.++ ...++|+++.++++++++.....
T Consensus 187 -~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~~~~~~~~~~~~~------ 259 (374)
T PRK05839 187 -HDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDASILKKYKAYRT------ 259 (374)
T ss_pred -cCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecCHHHHHHHHHHHh------
Confidence 9999999999875321 11 10 11135688999999863 22336999999998887753211
Q ss_pred hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEc
Q 017726 234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIV 313 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 313 (367)
. ..+..+.....++..++. .+.-+++.++++.++++.+.+.| ++. .+ .++.++|+++
T Consensus 260 ----------~--~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~l---~~~--~p----~gg~fi~~~~ 316 (374)
T PRK05839 260 ----------Y--LGCASPLPLQKAAAVAWL--DDEHAEFFRNIYAKNLKLAREIL---GIT--IP----PATFYVWLPV 316 (374)
T ss_pred ----------h--cCCCCChHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHhc---CCC--CC----CeeEEEEEeC
Confidence 0 011223222222222221 12225666777777777766544 443 22 4566788887
Q ss_pred CCCCCHHHHHHHHHhhCCeEEccCCCCC----CCcEEEEeecC
Q 017726 314 PSHINSSEIVRRAWQRYNLSLGLGLNKV----AGKVFRIGHLG 352 (367)
Q Consensus 314 ~~~~~~~~l~~~L~~~~gv~v~~g~~~~----~~~~iRi~~~~ 352 (367)
+ +..+++++|.+++||.+.+|..+. ..+++||++..
T Consensus 317 ~---~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~ 356 (374)
T PRK05839 317 D---NDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVY 356 (374)
T ss_pred C---ChHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecC
Confidence 5 457899999876799999984322 24789999853
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=217.96 Aligned_cols=304 Identities=17% Similarity=0.141 Sum_probs=204.6
Q ss_pred CChHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHhcC----C-CCceEEecCChhHHHHHHHHccCCCCCeEEE
Q 017726 19 HIPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKT----T-SGTPFLIPTTGTGAWESALTNTLSPGDRIIS 89 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~~~----~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~ 89 (367)
+.++.+.+++.+.... ...|.......++|+.++++++. . ++++|++++|+++++..++.+++.+||.|++
T Consensus 46 ~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vli 125 (394)
T PRK06836 46 PPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAILNPGDEVIV 125 (394)
T ss_pred CCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhcCCCCEEEE
Confidence 4567788877653321 12232334566788888888752 1 2345999999999999999998999999999
Q ss_pred EeCCcchHHHHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHH---HHHHHHh
Q 017726 90 FLIGQFSLLWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSK---VRKLLDE 165 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~---i~~~~~~ 165 (367)
++|.|... ...++..|++++.++.+++ +.+|+++++++++ ++++++++++|+||||.++|.++ |.++|++
T Consensus 126 ~~p~~~~~--~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~----~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~ 199 (394)
T PRK06836 126 FAPYFVEY--RFYVDNHGGKLVVVPTDTDTFQPDLDALEAAIT----PKTKAVIINSPNNPTGVVYSEETLKALAALLEE 199 (394)
T ss_pred cCCCCccH--HHHHHHcCCEEEEEecCCccCcCCHHHHHhhcC----cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHH
Confidence 99976653 3557788999999998765 6899999999997 46799999999999999998554 5555665
Q ss_pred c----CCCcEEEEeeeeccCcee---e-c-cccccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeechH
Q 017726 166 Y----RHPALFLVDGVSSICAID---F-R-MDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 166 ~----~~~~~vi~D~~~~~~~~~---~-~-~~~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (367)
. .||+++++|++|...... . . ....+..+++.|++|.++ ...++|+++++++..+......
T Consensus 200 ~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~--------- 270 (394)
T PRK06836 200 KSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGERIGYIAVNPEMEDADDLVA--------- 270 (394)
T ss_pred hhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchhhccCcceeeEEEecCHHHhhhHHHHH---------
Confidence 2 269999999998643221 1 0 112345799999999995 2234799999887633211000
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS 315 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 315 (367)
.. ....... ..+..+.....++ ..+.+.+ ..++.+.++++.+.+.|++.|+.+..+ .+++++|+++|.
T Consensus 271 ~~-~~~~~~~-~~~~~~~~~q~~~----~~~l~~~--~~~~~~~~~r~~l~~~L~~~g~~~~~~----~gg~~~~~~~~~ 338 (394)
T PRK06836 271 AL-VFANRIL-GFVNAPALMQRVV----AKCLDAT--VDVSIYKRNRDLLYDGLTELGFECVKP----QGAFYLFPKSPE 338 (394)
T ss_pred HH-HHHhhcc-ccccCCHHHHHHH----HHHhCCh--HHHHHHHHHHHHHHHHHHhCCCEeecC----CceEEEEEeCCC
Confidence 00 0000000 0112332222222 2222222 124567778889999998888777665 456677888765
Q ss_pred CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeec
Q 017726 316 HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHL 351 (367)
Q Consensus 316 ~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~ 351 (367)
.+..++++.|. ++||.+.+|..+..++++||++.
T Consensus 339 -~~~~~~~~~l~-~~gv~v~~g~~f~~~~~iRi~~~ 372 (394)
T PRK06836 339 -EDDVAFCEKAK-KHNLLLVPGSGFGCPGYFRLSYC 372 (394)
T ss_pred -CCHHHHHHHHH-hCCEEEECchhcCCCCeEEEEec
Confidence 57788998885 56999999865545678999975
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-26 Score=206.71 Aligned_cols=306 Identities=13% Similarity=0.105 Sum_probs=213.5
Q ss_pred CCCCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCC
Q 017726 6 APGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGD 85 (367)
Q Consensus 6 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd 85 (367)
+|.+.|+-....+.+.++..+++.++. +......++++.+++++|.+++ ++++++||++|+..++.+++++||
T Consensus 24 ~~~~~ylgl~~~~~~~~~~~~~~~~~~------g~~~~~~~Le~~lA~~~g~~~e-~ilv~~gg~~a~~~~~~al~~~gd 96 (346)
T TIGR03576 24 DSLYDLTGLAGGFKIDEEDLELLETYV------GPAIFEEKVQELGREHLGGPEE-KILVFNRTSSAILATILALEPPGR 96 (346)
T ss_pred ccccccccCCCChhHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHcCCCcc-eEEEECCHHHHHHHHHHHhCCCCC
Confidence 466888888888888888888888763 2337888999999999999764 488999999999999999999999
Q ss_pred eEEEEeC---CcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccc---ccHHHH
Q 017726 86 RIISFLI---GQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT---NNLSKV 159 (367)
Q Consensus 86 ~vl~~~~---~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~---~~~~~i 159 (367)
.|+++.+ .|.+ +...++..|+++... .++++++. . +++++|+++ +.+++|.+ .|+++|
T Consensus 97 ~Vli~~~d~p~~~s--~~~~~~l~ga~~~~~-------~~l~~l~~--~----~~~~lIiit-g~s~~G~v~~~~~L~~i 160 (346)
T TIGR03576 97 KVVHYLPEKPAHPS--IPRSCKLAGAEYFES-------DELSELKK--I----DGTSLVVIT-GSTMDLKVVSEEDLKRV 160 (346)
T ss_pred EEEECCCCCCCchh--HHHHHHHcCCEEecc-------CCHHHHhh--C----cCceEEEEE-CCCCCCcccCHHHHHHH
Confidence 9997533 3333 335577778875332 14555322 1 356888775 57899998 468888
Q ss_pred HHHHHhcCCCcEEEEeeeeccCceee----ccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechH
Q 017726 160 RKLLDEYRHPALFLVDGVSSICAIDF----RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 160 ~~~~~~~~~~~~vi~D~~~~~~~~~~----~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (367)
.++|++ +|+++++|++|+.+.... +....+.|+++.|++|+++|.. +|++++++++++.+......
T Consensus 161 ~~la~~--~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKalaG~r-~G~v~~~~~li~~l~~~~~~------- 230 (346)
T TIGR03576 161 IKQAKS--KEAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLMDGPR-GGLLAGRKELVDKIKSVGEQ------- 230 (346)
T ss_pred HHHHHH--cCCEEEEECCccccccccCCCCCHHHcCCcEEEeccchhccccc-eEEEEeCHHHHHHHHHhhcC-------
Confidence 899998 999999999998754211 1122356899999999887776 49999999999888753211
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS 315 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 315 (367)
+.++.+...+.+..++|+.. ..+.+++.++++.+.+.+.++++ .+..+ ..+ +++++++
T Consensus 231 -----------~~~s~~~~~~~aa~~aL~~~---~~~~~~~~l~~r~~~~~~~l~~~--~~~~~----~~~-f~~~~~~- 288 (346)
T TIGR03576 231 -----------FGLEAQAPLLAAVVRALEEF---ELSRIRDAFKRKEEVYLRLFDKL--NVERT----PTG-FVIKGVE- 288 (346)
T ss_pred -----------cccCccHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHhC--CCCcC----CCe-EEEEeCC-
Confidence 11223444445555566542 23556777788888888888753 34332 233 5777774
Q ss_pred CCCHHHHHHHHHhhCCeEEccCCCC-CCCcEEEEeecCCCC---HHHHHHhhhhc
Q 017726 316 HINSSEIVRRAWQRYNLSLGLGLNK-VAGKVFRIGHLGHLN---EVMFNFQLLFQ 366 (367)
Q Consensus 316 ~~~~~~l~~~L~~~~gv~v~~g~~~-~~~~~iRi~~~~~~~---~~~~~~~~l~~ 366 (367)
+.+..+++..+.+++||.++++..+ ..++++||++....+ +.+.+..+|++
T Consensus 289 ~~~~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis~~~~~~~~~~~~~~~~al~~ 343 (346)
T TIGR03576 289 EEKLIEIGLDLLRNYGIITITAVGMPGASKTLRFDLAAKDAERIGDDYLVEAVKD 343 (346)
T ss_pred CCCHHHHHHHHHHhCCEEEeCCcccCCCCCeEEEEEecChHHhcCHHHHHHHHHh
Confidence 2244566767777889999998654 235689999655443 45666666653
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=215.96 Aligned_cols=330 Identities=15% Similarity=0.116 Sum_probs=223.6
Q ss_pred CCCChHHHHHHHccCC--CC--CCC-----CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhH-HHHHH--HH-ccCCC
Q 017726 17 PVHIPDQVIRAMNRNN--ED--YRS-----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG-AWESA--LT-NTLSP 83 (367)
Q Consensus 17 p~~~~~~v~~a~~~~~--~~--~~~-----~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~-al~~~--~~-~~~~~ 83 (367)
....++.+.+++.+.. .+ +.. .+..+...++++++++++|.+.. .++.++|+. .+..+ +. ....+
T Consensus 79 ~~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~~--~l~~~~GA~a~~~~l~~~r~~~~~~ 156 (481)
T PRK04366 79 TMKYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMDAV--TLQPAAGAHGELTGLLMIRAYHEAR 156 (481)
T ss_pred CCCCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCCce--EEEeCcHHHHHHHHHHHHHHHhhcc
Confidence 3466888888888751 22 111 12456678899999999999742 344444543 33322 22 23566
Q ss_pred CC----eEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccc-ccHHH
Q 017726 84 GD----RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT-NNLSK 158 (367)
Q Consensus 84 gd----~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~-~~~~~ 158 (367)
|| +|+++.+.|+++. ..++..|++++.++.+.++.+|+++++++++ +++++|++++|+ ++|.+ .|+++
T Consensus 157 Gd~~~~~Vlv~~~~hp~~~--~~~~~~G~~vv~v~~~~~~~~D~e~L~~~i~----~~t~~V~v~~Pn-~tG~~~~dl~e 229 (481)
T PRK04366 157 GDTKRTEVIVPDSAHGTNP--ASAAMAGFKVVEIPSNEDGLVDLEALKAAVG----EDTAALMLTNPN-TLGLFERNILE 229 (481)
T ss_pred CcCCCCEEEEcCCccHhHH--HHHHHcCCEEEEeecCCCCCcCHHHHHhhcc----cCCeEEEEeCCC-CccccchHHHH
Confidence 66 8999999887765 3467789999999998788899999999997 467999999977 99987 58999
Q ss_pred HHHHHHhcCCCcEEEEeeeeccCce-eeccccccceEEEecCCCcccCC-----CcceeeeeCHHHHHHhccCCC----C
Q 017726 159 VRKLLDEYRHPALFLVDGVSSICAI-DFRMDEWGIDVALTGSQKALSLP-----TGMGIVCASPKALEASKTAKS----V 228 (367)
Q Consensus 159 i~~~~~~~~~~~~vi~D~~~~~~~~-~~~~~~~~~d~~~~s~~K~~~g~-----~g~g~~~~~~~~~~~~~~~~~----~ 228 (367)
|.++|++ +|+++++|+++..+.. ..+...+|+|++++++||||++| +|+|++++++++.+++..... .
T Consensus 230 I~~~a~~--~gal~iVD~a~~~~~~g~~~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~ 307 (481)
T PRK04366 230 IAEIVHE--AGGLLYYDGANLNAILGKARPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKDGD 307 (481)
T ss_pred HHHHHHH--cCCEEEEEecChhhhcccCCccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeeccCC
Confidence 9999999 9999999999875422 24566779999999999999755 456799999998888754321 1
Q ss_pred ceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCce
Q 017726 229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV 308 (367)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 308 (367)
.+.+.++ ..+. .+.+-.++.+...+.+....+..+..+|++++.++...++++++++|+++ +.+..+.+ .. ..
T Consensus 308 ~~~l~~~-r~~~--i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~-~~~~~~~~--~~-~~ 380 (481)
T PRK04366 308 RYRLDYD-RPKS--IGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI-YDLPYDRP--CM-HE 380 (481)
T ss_pred ceeeccc-cccc--CCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-CcccCCCC--ee-EE
Confidence 1222221 1110 11112334556555666666667777788888899999999999999997 33332211 11 12
Q ss_pred EEEEcC----CCCCHHHHHHHHHhhCCeEEccCCCCC-CCcEEEEeecCCCCHH--HHHHhhhh
Q 017726 309 TAVIVP----SHINSSEIVRRAWQRYNLSLGLGLNKV-AGKVFRIGHLGHLNEV--MFNFQLLF 365 (367)
Q Consensus 309 ~~~~~~----~~~~~~~l~~~L~~~~gv~v~~g~~~~-~~~~iRi~~~~~~~~~--~~~~~~l~ 365 (367)
+.|..+ ++.+..++.++|.++ ||.+.....+. ....+|+++.-+++.+ |.+..+|.
T Consensus 381 ~~~~~~~~~~~g~~~~~v~~~L~~~-Gi~~~~~~~p~~~~~~l~is~~e~~t~edid~l~~~l~ 443 (481)
T PRK04366 381 FVLSGKKLKETGVRTLDIAKRLLDY-GFHPPTIYFPLIVPEALMIEPTETESKETLDAFIAAMK 443 (481)
T ss_pred EEEECccccccCCCHHHHHHHHHHC-CccCCccccccccCCeEEEcccCCCCHHHHHHHHHHHH
Confidence 333321 245788999999765 98876333322 2567999986666554 44444443
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=214.63 Aligned_cols=315 Identities=12% Similarity=0.018 Sum_probs=216.0
Q ss_pred CChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH
Q 017726 19 HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL 98 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~ 98 (367)
.+.+++++++.+. ...|.......++|+.++++++.+. +++|+||++|+..++.++++||| |+++++.|.++.
T Consensus 58 a~~~a~~~a~~~g---~~~Y~~~~g~~~Lreaia~~~~~~~---vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~ 130 (460)
T PRK13238 58 AMSDRQWAAMMRG---DEAYAGSRSYYRLEDAVKDIFGYPY---TIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTR 130 (460)
T ss_pred hhhHHHHHHHHhC---CcccCCCCCHHHHHHHHHHHhCCCc---EEECCCHHHHHHHHHHHhCCCCC-EEccCCcccchH
Confidence 3455666666431 2234334567799999999998653 89999999999999999999999 888877444332
Q ss_pred HHHHHHHhCCceEEEeCCC--------CC--CCCHHHHHHHHhccCCCCccEEEEEecCCCcc-cccc---HHHHHHHHH
Q 017726 99 WIDQQQRLNFNVDVVESDW--------GE--GAKLDVLASKLAADTAHTIKAICIVHNETATG-VTNN---LSKVRKLLD 164 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~--------~~--~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG-~~~~---~~~i~~~~~ 164 (367)
...+..|.+++.++++. ++ .+|+++|++++++++.+++++|++++|+||+| .+++ +++|.++|+
T Consensus 131 --~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~ 208 (460)
T PRK13238 131 --AHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAK 208 (460)
T ss_pred --HHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHH
Confidence 34567899999998853 23 49999999999865434789999999999998 7765 578999999
Q ss_pred hcCCCcEEEEeeeeccC-----------ceeeccc------cccceEEEecCCCcccCCCcceeeeeC-HHHHHHhccCC
Q 017726 165 EYRHPALFLVDGVSSIC-----------AIDFRMD------EWGIDVALTGSQKALSLPTGMGIVCAS-PKALEASKTAK 226 (367)
Q Consensus 165 ~~~~~~~vi~D~~~~~~-----------~~~~~~~------~~~~d~~~~s~~K~~~g~~g~g~~~~~-~~~~~~~~~~~ 226 (367)
+ +|++||+|+++... ....+.. ....|++++|++|.+.++.| |+++.+ +++++++....
T Consensus 209 ~--~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~G-G~i~~~d~~l~~~~~~~~ 285 (460)
T PRK13238 209 K--YGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIG-GLLCFRDEDLFTECRTLC 285 (460)
T ss_pred H--cCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcce-eEEEcChHHHHHHhhhcc
Confidence 9 99999999987432 1111111 01379999999998877776 888888 57777776432
Q ss_pred CCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCC
Q 017726 227 SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSD 306 (367)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 306 (367)
... .|..+...++...+.|+..++....++ ...+...+++++|.+.|++.|+++..| .++
T Consensus 286 ~~~-------------~g~~t~~g~~~~~~~Ala~~l~e~~~~---~~~~~~~~~~~~l~~~L~~~G~~~~~p----~Gg 345 (460)
T PRK13238 286 ILY-------------EGFPTYGGLAGRDMEALAVGLYEGMDE---DYLAYRIGQVEYLGEGLEEAGVPIQTP----AGG 345 (460)
T ss_pred ccc-------------CCcccccCcHHHHHHHHHhhHHHhhCh---HHHHHHHHHHHHHHHHHHHCCCCeEcc----CCc
Confidence 110 010012223443345555555543232 122233446799999999999999987 455
Q ss_pred ceEEEEcCC--------CCCHHHHHHHHHhhCCeEEccCCC------CCC-------CcEEEEeecC---CCCHHHHHHh
Q 017726 307 TVTAVIVPS--------HINSSEIVRRAWQRYNLSLGLGLN------KVA-------GKVFRIGHLG---HLNEVMFNFQ 362 (367)
Q Consensus 307 ~~~~~~~~~--------~~~~~~l~~~L~~~~gv~v~~g~~------~~~-------~~~iRi~~~~---~~~~~~~~~~ 362 (367)
+++++++.+ +.+..+++.+|.++.||.+.++.. +.. ...+|+++.- +.+..|...+
T Consensus 346 ~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~ 425 (460)
T PRK13238 346 HAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAE 425 (460)
T ss_pred eEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecccccCCHHHHHHHHH
Confidence 667777632 124578999999999999987632 111 2569999754 4555565555
Q ss_pred hhh
Q 017726 363 LLF 365 (367)
Q Consensus 363 ~l~ 365 (367)
.|.
T Consensus 426 ~l~ 428 (460)
T PRK13238 426 ALK 428 (460)
T ss_pred HHH
Confidence 554
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=211.21 Aligned_cols=308 Identities=16% Similarity=0.156 Sum_probs=205.3
Q ss_pred ChHHHHHHHccC-CC-CCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC-CCCeEEEEeCCcch
Q 017726 20 IPDQVIRAMNRN-NE-DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS-PGDRIISFLIGQFS 96 (367)
Q Consensus 20 ~~~~v~~a~~~~-~~-~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~-~gd~vl~~~~~~~~ 96 (367)
+++.+.+++.+. .. ...+|. ....++++.++++++.+. ++++++|++++..++.+++. +||.|+++++.|++
T Consensus 18 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~l~~~la~~~~~~~---~~~~~~Gs~a~~~~l~~~~~~~gd~Vl~~~~~~~~ 92 (353)
T PLN02721 18 PTDAMRAAMANAEVDDDVLGYD--PTALRLEEEMAKIFGKEA---ALFVPSGTMGNLISVLVHCDVRGSEVILGDNSHIH 92 (353)
T ss_pred CCHHHHHHHHhccCCCcccCCC--HHHHHHHHHHHHHhCCce---eEEecCccHHHHHHHHHHccCCCCeEEEcCcccee
Confidence 467778888763 11 122333 447899999999999864 46667788887777777676 99999999998765
Q ss_pred HHH-HHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccC---CCCccEEEEEec-CCCcccccc---HHHHHHHHHhcCC
Q 017726 97 LLW-IDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT---AHTIKAICIVHN-ETATGVTNN---LSKVRKLLDEYRH 168 (367)
Q Consensus 97 ~~~-~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~---~~~~~lv~~~~~-~n~tG~~~~---~~~i~~~~~~~~~ 168 (367)
..- ...+...|++++.++.++++.+|+|++++++++.. .+++++|+++++ +||+|.++| +++|.++|++ +
T Consensus 93 ~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~--~ 170 (353)
T PLN02721 93 LYENGGISTLGGVHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKR--H 170 (353)
T ss_pred hhcccchhhhcCceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHH--c
Confidence 431 12567789999999988778899999999997421 026799999875 678999887 6789999999 9
Q ss_pred CcEEEEeeeeccCce---eeccc--cccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhc
Q 017726 169 PALFLVDGVSSICAI---DFRMD--EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL 243 (367)
Q Consensus 169 ~~~vi~D~~~~~~~~---~~~~~--~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (367)
|+++++|+++.++.. ..+.. ..++|+++.|+||+++++.| ++++.++++++.+..... ...
T Consensus 171 g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G-~~~~~~~~~~~~~~~~~~-------------~~~ 236 (353)
T PLN02721 171 GLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPVG-SVIVGSKSFIRKAKRLRK-------------TLG 236 (353)
T ss_pred CCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCcee-eEEecCHHHHHhHHHHHH-------------hcC
Confidence 999999999865431 11111 22678889999999976554 457788888776553210 000
Q ss_pred CCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCcc-ccCCCccCCCceEEEEcCCC--CCH
Q 017726 244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKN-CTQKEEWFSDTVTAVIVPSH--INS 319 (367)
Q Consensus 244 ~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~~~~~~~~~~~--~~~ 319 (367)
+. +......+. +++..+.+. +++ .++..++++++.+.|+++ ++.+ ..+ ...+++++++++. .+.
T Consensus 237 ~~-----~~~~~~~~~-~~~~~l~~~-~~~-~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 304 (353)
T PLN02721 237 GG-----MRQVGVLAA-AALVALQEN-VPK-LEDDHKKAKLLAEGLNQIKGLRVNVAA----VETNIVYFDITDGSRITA 304 (353)
T ss_pred CC-----eehhHHHHH-HHHHHHHHH-HHH-HHHHHHHHHHHHHHHHhCCCcEEecCC----ccceEEEEEccCCccccH
Confidence 11 111111111 122222221 222 334467788999999998 7654 332 1234677887543 467
Q ss_pred HHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCH--HHHHHhhhh
Q 017726 320 SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNE--VMFNFQLLF 365 (367)
Q Consensus 320 ~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~--~~~~~~~l~ 365 (367)
.+++++|. ++||.++++. ..++|+++....+. .+....+|+
T Consensus 305 ~~~~~~L~-~~gi~v~~~~----~~~lR~~~~~~~~~~~i~~~~~~l~ 347 (353)
T PLN02721 305 EKLCKSLE-EHGVLLMPGN----SSRIRVVTHHQISDSDVQYTLSCFQ 347 (353)
T ss_pred HHHHHHHH-hCCcEEecCC----CceEEEEecCcCCHHHHHHHHHHHH
Confidence 89999997 5599999763 35799998644444 344444443
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=208.75 Aligned_cols=295 Identities=13% Similarity=0.089 Sum_probs=209.4
Q ss_pred CCCCChHHHHHHHccCCCC---CCCCcHHHHHHHHHHHHHHHhc---CCCCceEEecCChhHHHHHHHHccCCCCCeEEE
Q 017726 16 GPVHIPDQVIRAMNRNNED---YRSPAVPALTKTLLEDIKKIFK---TTSGTPFLIPTTGTGAWESALTNTLSPGDRIIS 89 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~~---~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~ 89 (367)
.|.++|+.+++++.+.... ++++. ....++|+.++++++ .++ ++|++|+|+++++..++.++ |.|++
T Consensus 29 ~~~~~p~~~~~~~~~~~~~~~~~~Y~~--~~~~~Lr~aia~~~~~~~~~~-~~i~it~Ga~~~i~~~~~~~----d~v~v 101 (335)
T PRK14808 29 NPFPFPEDLVDEVFRRLNSDTLRIYYD--SPDEELIEKILSYLDTDFLSK-NNVSVGNGADEIIYVMMLMF----DRSVF 101 (335)
T ss_pred CCCCCCHHHHHHHHHHhhhhhhhcCCC--CChHHHHHHHHHHhCCCCCCc-ceEEEcCCHHHHHHHHHHHh----CcEEE
Confidence 4667788889988774322 22233 246789999999998 544 45999999999999998876 67999
Q ss_pred EeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCC
Q 017726 90 FLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHP 169 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~ 169 (367)
.+|.|+.+ ...++..|.+++.++.+.++.++.+. + .+++++++++||||||.+++.+++.+++ + ++
T Consensus 102 ~~P~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~~~----~-----~~~~~i~i~nP~NPTG~~~s~~~l~~l~-~--~~ 167 (335)
T PRK14808 102 FPPTYSCY--RIFAKAVGAKFLEVPLTKDLRIPEVN----V-----GEGDVVFIPNPNNPTGHVFEREEIERIL-K--TG 167 (335)
T ss_pred CCCCHHHH--HHHHHHcCCeEEEecCCCcCCCChhH----c-----cCCCEEEEeCCCCCCCCCcCHHHHHHHH-h--cC
Confidence 98876654 36688899999999988766554322 2 2458999999999999999999999998 4 78
Q ss_pred cEEEEeeeeccCce-e-ec-cccccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCC
Q 017726 170 ALFLVDGVSSICAI-D-FR-MDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGT 245 (367)
Q Consensus 170 ~~vi~D~~~~~~~~-~-~~-~~~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (367)
++||+|++|..... . .+ .......+++.|+||.++ ...++|++++++++++++.....
T Consensus 168 ~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~~~~~~l~~~~~------------------ 229 (335)
T PRK14808 168 AFVALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYNRVRL------------------ 229 (335)
T ss_pred CEEEEECchhhhcCCchHHHHHhCCCEEEEEechhhccCcccceEEEEeCHHHHHHHHHhcC------------------
Confidence 99999999874321 1 11 112234688899999995 22337999999999888864321
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHH
Q 017726 246 FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRR 325 (367)
Q Consensus 246 ~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 325 (367)
+++.+.....+...++... +. +++..+...++++.+.+.|++.|+.+..+ .+ .+++++++ +.+..++.++
T Consensus 230 --~~~~~~~~q~a~~~~l~~~-~~-~~~~~~~~~~~r~~l~~~L~~~g~~~~~~----~g-~f~~~~l~-~~~~~~~~~~ 299 (335)
T PRK14808 230 --PFNVSYVSQMFAKVALDHR-EI-FEERTKFIVEERERMKSALREMGYRITDS----RG-NFVFIFME-KEEKERLLEH 299 (335)
T ss_pred --CCCCCHHHHHHHHHHHhCH-HH-HHHHHHHHHHHHHHHHHHHHHCCCEECCC----CC-eEEEEeCC-CccHHHHHHH
Confidence 1223333334444444422 11 45556677777889999999988777665 34 46788885 3456788888
Q ss_pred HHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 326 AWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 326 L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
|.+ +||.|+. + ..++||+ .+..++.+.+.+.|++
T Consensus 300 l~~-~Gi~V~~-~----~~~~Ris-i~~~~~~~~~~~~l~~ 333 (335)
T PRK14808 300 LRA-KNIAVRS-F----REGVRIT-IGKREENDMILKELEV 333 (335)
T ss_pred HHH-CCeEEEE-C----CCCeEEe-cCCHHHHHHHHHHHHh
Confidence 865 5999985 2 2579999 4666777777777654
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-26 Score=207.98 Aligned_cols=307 Identities=18% Similarity=0.130 Sum_probs=213.2
Q ss_pred ChHHHHHHHccCCCC----CC----CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 20 IPDQVIRAMNRNNED----YR----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~----~~----~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
.++.+++++.+.... .. .........++++.++++++.+ + .+++++|++++..++..++++||.|++.+
T Consensus 54 ~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~--~-~i~~~~g~~~~~~~l~~~~~~gd~V~~~~ 130 (385)
T PRK05958 54 RHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGAE--R-ALLFSSGYAANLAVLTALAGKGDLIVSDK 130 (385)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCC--c-EEEECcHHHHHHHHHHHhCCCCCEEEEeC
Confidence 355677777664321 11 1123466889999999999842 3 45556778888777778889999999998
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcE
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPAL 171 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~ 171 (367)
+.|++.. ..++..|.+++.++.. |++++++++++.. ++++++++.+++|++|...++++|.++|++ +|++
T Consensus 131 ~~~~~~~--~~~~~~g~~~~~~~~~-----d~~~l~~~i~~~~-~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~--~~~~ 200 (385)
T PRK05958 131 LNHASLI--DGARLSRARVRRYPHN-----DVDALEALLAKWR-AGRALIVTESVFSMDGDLAPLAELVALARR--HGAW 200 (385)
T ss_pred ccCHHHH--HHHHhcCCceEEeCCC-----CHHHHHHHHHhcc-CCCeEEEEEecccCCCCcCCHHHHHHHHHH--hCCE
Confidence 8776643 3456678888888753 7899999987532 235677777899999999999999999999 9999
Q ss_pred EEEeeeeccCceee---------ccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhh
Q 017726 172 FLVDGVSSICAIDF---------RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYN 242 (367)
Q Consensus 172 vi~D~~~~~~~~~~---------~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (367)
+|+|++|+.+.... .......++++.|++|+++ +.| |+++.++++.+.+...... ...
T Consensus 201 li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G-g~~~~~~~~~~~~~~~~~~-~~~---------- 267 (385)
T PRK05958 201 LLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALG-SSG-AAVLGSETLIDYLINRARP-FIF---------- 267 (385)
T ss_pred EEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcc-cCC-cEEEcCHHHHHHHHHhCcc-cee----------
Confidence 99999997653320 1222234588999999994 666 8888898887766432110 000
Q ss_pred cCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHH
Q 017726 243 LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEI 322 (367)
Q Consensus 243 ~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (367)
....+..+++++.++++.+.+. +++.+++.++++++.+.|++.|+++..+ .+.++++.+++..+..++
T Consensus 268 -----~~~~~~~~~aa~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 335 (385)
T PRK05958 268 -----TTALPPAQAAAARAALRILRRE--PERRERLAALIARLRAGLRALGFQLMDS-----QSAIQPLIVGDNERALAL 335 (385)
T ss_pred -----cCCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCCcCCC-----CCCEEEEEeCCHHHHHHH
Confidence 1124445556666777776543 5678899999999999999988776554 334677777543456789
Q ss_pred HHHHHhhCCeEEccCCCC---CCCcEEEEeecCCCCHH--HHHHhhhh
Q 017726 323 VRRAWQRYNLSLGLGLNK---VAGKVFRIGHLGHLNEV--MFNFQLLF 365 (367)
Q Consensus 323 ~~~L~~~~gv~v~~g~~~---~~~~~iRi~~~~~~~~~--~~~~~~l~ 365 (367)
+++|.+ +||.+.++..+ ....++||++....+++ +...+.|+
T Consensus 336 ~~~l~~-~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~ 382 (385)
T PRK05958 336 AAALQE-QGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALA 382 (385)
T ss_pred HHHHHH-CCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence 999975 49999864222 12357999987655544 44444443
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-26 Score=213.69 Aligned_cols=283 Identities=13% Similarity=0.100 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHHhcC------C-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEe
Q 017726 42 ALTKTLLEDIKKIFKT------T-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVE 114 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~------~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~ 114 (367)
.+..++|+.++++++. + .+++|++|+|+++++..++.+++.|||.|+++.|.|+.+.. .+....|++++.|+
T Consensus 95 ~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~-~~~~~~g~~vv~v~ 173 (447)
T PLN02607 95 HGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDR-DLRWRTGVKIVPIH 173 (447)
T ss_pred cchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHH-HHHhcCCcEEEEEe
Confidence 4567888888888751 1 33569999999999999999999999999999997766532 23335789999998
Q ss_pred CCCC--CCCCHHHHHHHHhcc--CCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccCcee---
Q 017726 115 SDWG--EGAKLDVLASKLAAD--TAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAID--- 184 (367)
Q Consensus 115 ~~~~--~~~d~e~l~~~i~~~--~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~--- 184 (367)
++.+ +.+|++.+++++++. ...++|++++++|+||||.+++ ++++.++|++ +|+++|+|++|+.....
T Consensus 174 ~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~--~~i~lI~DEiYa~~~f~~~~ 251 (447)
T PLN02607 174 CDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVR--KNIHLVSDEIYSGSVFSASE 251 (447)
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHH--CCCEEEEeccccccccCCCC
Confidence 8643 468999999988741 1147899999999999999997 5678888888 99999999999753221
Q ss_pred e-ccc---------c-ccceEEEecCCCcccCCCc--ceeeee-CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCC
Q 017726 185 F-RMD---------E-WGIDVALTGSQKALSLPTG--MGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT 250 (367)
Q Consensus 185 ~-~~~---------~-~~~d~~~~s~~K~~~g~~g--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (367)
+ +.. . ....+++.|+||.|+ .+| +|+++. ++++++.+.... . +. .
T Consensus 252 f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg-~~GlRvG~ivs~n~~l~~~~~~~~------------------~-~~-~ 310 (447)
T PLN02607 252 FVSVAEIVEARGYKGVAERVHIVYSLSKDLG-LPGFRVGTIYSYNDKVVTTARRMS------------------S-FT-L 310 (447)
T ss_pred cccHHHHHhhcCCCCCcCcEEEEEcchhcCC-CCcceEEEEEEcCHHHHHHHHHHh------------------h-cC-C
Confidence 1 110 0 134578899999984 444 699998 555555443210 0 01 1
Q ss_pred CcHHHHHHHHHHHHH--HHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCC-----C-HHHH
Q 017726 251 PSIQLLYGLRAALDL--IFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI-----N-SSEI 322 (367)
Q Consensus 251 ~~~~~~~al~~al~~--~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~l 322 (367)
.+.....++...+.. +.+.-+++.++++.+..+.+.+.|++.|+++..+ .++.++|+++++.. + ..++
T Consensus 311 ~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~gi~~~~~----~ag~fvw~~L~~~~~~~~~~~e~~l 386 (447)
T PLN02607 311 VSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRAGIECLKG----NAGLFCWMNLSPLLETPTREGELAL 386 (447)
T ss_pred CCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccC----CeeEEEEEEchHhhcCCCchhHHHH
Confidence 222222222222221 0111145667788888899999999988877665 56778899985322 1 2467
Q ss_pred HHHHHhhCCeEEccCCCC--CCCcEEEEeecC
Q 017726 323 VRRAWQRYNLSLGLGLNK--VAGKVFRIGHLG 352 (367)
Q Consensus 323 ~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~ 352 (367)
.++|.+++||.+.||..+ ..++++||++..
T Consensus 387 ~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~ 418 (447)
T PLN02607 387 WDSILREVKLNISPGSSCHCSEPGWFRVCFAN 418 (447)
T ss_pred HHHHHHhCCEEEcCccccCCCCCCEEEEEecc
Confidence 778877789999998543 345789999764
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=207.22 Aligned_cols=268 Identities=15% Similarity=0.097 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCH
Q 017726 44 TKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKL 123 (367)
Q Consensus 44 ~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~ 123 (367)
..++|+.+++++|.++ +++++|+|+++++..+... +.+| +|++.+|.|..+ ...++..|++++.++ |+
T Consensus 49 ~~~lr~~la~~~~~~~-~~i~~t~G~~~~i~~~~~~-l~~g-~vl~~~p~y~~~--~~~~~~~g~~~~~~~-------d~ 116 (330)
T TIGR01140 49 YDELRAAAAAYYGLPA-ASVLPVNGAQEAIYLLPRL-LAPG-RVLVLAPTYSEY--ARAWRAAGHEVVELP-------DL 116 (330)
T ss_pred HHHHHHHHHHHhCCCh-hhEEECCCHHHHHHHHHHH-hCCC-eEEEeCCCcHHH--HHHHHHcCCEEEEeC-------CH
Confidence 3899999999999865 3599999999999987655 5677 688888876654 355778899988887 78
Q ss_pred HHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccCceeeccc----cccceEEE
Q 017726 124 DVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAIDFRMD----EWGIDVAL 196 (367)
Q Consensus 124 e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~----~~~~d~~~ 196 (367)
+++++.+. +++++++++|+||||.++| +++|.++|++ +|++||+|++|.......+.. ..+.++++
T Consensus 117 ~~l~~~~~-----~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~ 189 (330)
T TIGR01140 117 DRLPAALE-----ELDVLVLCNPNNPTGRLIPPETLLALAARLRA--RGGWLVVDEAFIDFTPDASLAPQAARFPGLVVL 189 (330)
T ss_pred HHHHhhcc-----cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHh--cCCEEEEECcccccCCccchhhHhccCCCEEEE
Confidence 99988874 3579999999999999998 5556677777 999999999986443221211 12467999
Q ss_pred ecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC-hHH
Q 017726 197 TGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LEN 273 (367)
Q Consensus 197 ~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g-~~~ 273 (367)
.|++|+++ ++| +|++++++++++++..... .++.+.. ++.++.+.+.+.+ .++
T Consensus 190 ~S~SK~~g-~~G~R~G~i~~~~~~~~~l~~~~~--------------------~~~~s~~---~q~~~~~~l~~~~~~~~ 245 (330)
T TIGR01140 190 RSLTKFFG-LAGLRLGFVVAHPALLARLREALG--------------------PWTVNGP---ARAAGRAALADTAWQAA 245 (330)
T ss_pred Eecchhhc-CchhhhhheeCCHHHHHHHHhcCC--------------------CCCchHH---HHHHHHHHHhchHHHHH
Confidence 99999995 445 6999999999888764321 2234443 3344444444333 467
Q ss_pred HHHHHHHHHHHHHHHHHHcC-CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEee
Q 017726 274 VIERHRRLGKATRLAVEAWG-LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGH 350 (367)
Q Consensus 274 ~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~ 350 (367)
++++++.+++++.+.|++++ +++.++ .+.++|+.++ +..+++++|.+ +||.+.+|..+ ..+.++||++
T Consensus 246 ~~~~~~~~~~~l~~~L~~~~~~~~~~~-----~~~f~~~~~~---~~~~l~~~l~~-~gi~v~pg~~f~~~~~~~iRi~~ 316 (330)
T TIGR01140 246 TRARLAAERARLAALLARLGGLEVVGG-----TALFLLVRTP---DAAALHEALAR-RGILIRDFDNFPGLDPRYLRFAL 316 (330)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceECCC-----CCeEEEEEcC---CHHHHHHHHHH-CCEEEEECCCCCCCCCCEEEEEe
Confidence 78899999999999999985 554432 3456777764 45789999976 59999998653 2346899997
Q ss_pred cCCCCHHHHHHhhh
Q 017726 351 LGHLNEVMFNFQLL 364 (367)
Q Consensus 351 ~~~~~~~~~~~~~l 364 (367)
....++ +.+..+|
T Consensus 317 ~~~~~~-~~~~~~l 329 (330)
T TIGR01140 317 PTDEEN-DRLEEAL 329 (330)
T ss_pred cCHHHH-HHHHHhh
Confidence 554433 5555544
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-26 Score=209.69 Aligned_cols=318 Identities=15% Similarity=0.133 Sum_probs=215.5
Q ss_pred CCCCcccccCCCCCChHHHHHHHccCCCCCCC----CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC
Q 017726 6 APGKNHLFVPGPVHIPDQVIRAMNRNNEDYRS----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL 81 (367)
Q Consensus 6 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~ 81 (367)
+-+|.|+-...++.+-+++.+++.++.....+ +...+...++++.+++++|.+. .+++++|++|+..++..+.
T Consensus 50 ~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~~~---~l~~~sG~~an~~ai~~l~ 126 (402)
T TIGR01821 50 WCSNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKES---ALVFTSGYVANDATLATLA 126 (402)
T ss_pred eEccCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCCCe---EEEECchHHHHHHHHHHhh
Confidence 34566666666666667777777665433211 1234567899999999999532 5666888999998887654
Q ss_pred C--CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHH
Q 017726 82 S--PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKV 159 (367)
Q Consensus 82 ~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i 159 (367)
. +++.|+.....|.+. . ..+...|+++..++. .|+++++++++....+++++|++++++||+|.+.|+++|
T Consensus 127 ~~~~~~~v~~~~~~h~s~-~-~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~~i 199 (402)
T TIGR01821 127 KIIPGCVIFSDELNHASM-I-EGIRHSGAEKFIFRH-----NDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEI 199 (402)
T ss_pred CCCCCCEEEEcchHhHHH-H-HHHHHcCCeEEEECC-----CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHH
Confidence 3 566555443433332 2 334566777665543 277888888864321367999999999999999999999
Q ss_pred HHHHHhcCCCcEEEEeeeeccCcee------eccc--cccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCcee
Q 017726 160 RKLLDEYRHPALFLVDGVSSICAID------FRMD--EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF 231 (367)
Q Consensus 160 ~~~~~~~~~~~~vi~D~~~~~~~~~------~~~~--~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~ 231 (367)
.++|++ +|+++++|++|+.|... .... ....|+++.+++|.++ ..| |++++++++++.+...... +.
T Consensus 200 ~~l~~~--~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g-~~G-G~i~~~~~~~~~l~~~~~~-~~ 274 (402)
T TIGR01821 200 CDLADK--YGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFG-VVG-GYIAASRKLIDAIRSYAPG-FI 274 (402)
T ss_pred HHHHHH--cCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhc-cCC-ceeecCHHHHHHHHHhCcC-ce
Confidence 999999 99999999999855321 0000 1136899999999995 555 8888999988777532111 00
Q ss_pred echHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEE
Q 017726 232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAV 311 (367)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 311 (367)
+..+.+...+++..++++.+.+. +.++++.+++++++.+.|+++|+++..+ .++ ++.+
T Consensus 275 ---------------~t~~~~~~~~aaa~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~-i~~i 332 (402)
T TIGR01821 275 ---------------FTTSLPPAIAAGATASIRHLKES--QDLRRAHQENVKRLKNLLEALGIPVIPN----PSH-IVPV 332 (402)
T ss_pred ---------------ecCcCCHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHHHHcCCCcCCC----CCC-EEEE
Confidence 11235555556677788877654 4566677899999999999998877664 233 5556
Q ss_pred EcCCCCCHHHHHHHHHhhCCeEEccCCCCC---CCcEEEEeecCCCCHHHHH
Q 017726 312 IVPSHINSSEIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 312 ~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~---~~~~iRi~~~~~~~~~~~~ 360 (367)
.+++.....++.+.|.+++||.+.+...+. ...++||++....+.+|+.
T Consensus 333 ~~~~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~ 384 (402)
T TIGR01821 333 IIGDAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMID 384 (402)
T ss_pred EeCCHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHH
Confidence 553322356788888766799998753322 2357999998777665543
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-26 Score=214.61 Aligned_cols=308 Identities=13% Similarity=0.064 Sum_probs=210.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCC
Q 017726 40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESD 116 (367)
Q Consensus 40 ~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~ 116 (367)
..+...++++++++++|.+.. ++++++||++++..++.++ ..+||+|+++++.|+++. +...++..|++++.++.+
T Consensus 110 ~~~~~~e~~~~la~l~g~~~~-~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~ 188 (447)
T PRK00451 110 TLQAIFEYQTMICELTGMDVA-NASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYE 188 (447)
T ss_pred HHHHHHHHHHHHHHHhCCCcc-eEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCC
Confidence 345566777899999999865 4889999999999888776 478999999999887764 334456679999999998
Q ss_pred CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEE--eeeeccCceeeccccccceE
Q 017726 117 WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLV--DGVSSICAIDFRMDEWGIDV 194 (367)
Q Consensus 117 ~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~--D~~~~~~~~~~~~~~~~~d~ 194 (367)
++ .+|+++++++++ +++++|++++| |+||.+.|+++|.++|++ +|+++++ |.. +.+... ....+++|+
T Consensus 189 ~~-~~d~~~l~~~i~----~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~--~~~~~iv~~d~~-~~g~~~-~~~~~~~D~ 258 (447)
T PRK00451 189 DG-VTDLEALEAAVD----DDTAAVVVQYP-NFFGVIEDLEEIAEIAHA--GGALFIVGVDPV-SLGLLK-PPGEYGADI 258 (447)
T ss_pred CC-CCCHHHHHHhcC----CCeEEEEEECC-CCCCeeCCHHHHHHHHHH--CCCEEEEEcChH-HhccCC-CcccCCCCE
Confidence 77 899999999997 46799999998 899999999999999999 9999988 544 333332 234568999
Q ss_pred EEecCCCc-----ccCCCcceeeeeCHHHHHHhccCCCCc---------eeech--HHHHHHhhcCCccCCCCcHHHHHH
Q 017726 195 ALTGSQKA-----LSLPTGMGIVCASPKALEASKTAKSVR---------VFFDW--KDYIKFYNLGTFWPYTPSIQLLYG 258 (367)
Q Consensus 195 ~~~s~~K~-----~~g~~g~g~~~~~~~~~~~~~~~~~~~---------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a 258 (367)
++++++|+ ++| +|+|++++++++++.+.+..... +.... .....+++.++....+.......+
T Consensus 259 ~~~s~~k~~~~~~~~G-pg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 337 (447)
T PRK00451 259 VVGEGQPLGIPLSFGG-PYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALA 337 (447)
T ss_pred EEECCCcCCCCCCCCC-CCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHH
Confidence 99998886 544 47899999999988764321111 11110 011112232321111111122123
Q ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEc-c
Q 017726 259 LRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLG-L 336 (367)
Q Consensus 259 l~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~-~ 336 (367)
...+++.+.++|++++.+++.++++++.+.|+++ |+++... . ....+.++++ .+..+++++|.++ ||.+. +
T Consensus 338 aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~---~~~~~~v~~~--~~~~~~~~~L~~~-gi~~~~~ 410 (447)
T PRK00451 338 AAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVELFDG-P---FFNEFVVRLP--KPAEEVNEALLEK-GILGGYD 410 (447)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEecCC-C---eEEEEEEecC--CCHHHHHHHHHhc-CCCCCcc
Confidence 3334566667789999999999999999999998 6777521 1 1112335542 3578999999765 66532 2
Q ss_pred CC--CCCCCcEEEEeecCCCC--HHHHHHhhhhc
Q 017726 337 GL--NKVAGKVFRIGHLGHLN--EVMFNFQLLFQ 366 (367)
Q Consensus 337 g~--~~~~~~~iRi~~~~~~~--~~~~~~~~l~~ 366 (367)
+. .+....++|+++....+ +.+.+.++|++
T Consensus 411 ~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~ 444 (447)
T PRK00451 411 LGRYYPELGNHLLVCVTEKRTKEDIDALVAALGE 444 (447)
T ss_pred cccccCCcCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 21 12123579999865444 45555555543
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-26 Score=210.84 Aligned_cols=312 Identities=19% Similarity=0.143 Sum_probs=216.7
Q ss_pred CCCcHHHHHHHHHHHHHHHhcC------------CCCceEEecCChhHHHHHHHHcc----CC-----------------
Q 017726 36 RSPAVPALTKTLLEDIKKIFKT------------TSGTPFLIPTTGTGAWESALTNT----LS----------------- 82 (367)
Q Consensus 36 ~~~~~~~~~~~~~~~la~~~~~------------~~~~~v~~~~ggt~al~~~~~~~----~~----------------- 82 (367)
.+|....+..++.++++++++. +.....++|+|||+|+..++.+. +.
T Consensus 123 ~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~ 202 (522)
T TIGR03799 123 TSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAAL 202 (522)
T ss_pred cCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhh
Confidence 3677778888999999999852 22233688999999998876431 11
Q ss_pred -----CCCeEEEEeCCcchHHHHHHHHHhCC---ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEE--EEEecCCCccc
Q 017726 83 -----PGDRIISFLIGQFSLLWIDQQQRLNF---NVDVVESDWGEGAKLDVLASKLAADTAHTIKAI--CIVHNETATGV 152 (367)
Q Consensus 83 -----~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv--~~~~~~n~tG~ 152 (367)
++..|+++..+|+|. .+.++.+|+ +++.||++.++++|+++|+++|++....+++.+ +.+..++.||.
T Consensus 203 ~~~~~~~~~v~~S~~~H~S~--~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGa 280 (522)
T TIGR03799 203 KHYGYDGLAILVSERGHYSL--GKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGN 280 (522)
T ss_pred hhccCCceEEEECCCchHHH--HHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCC
Confidence 234677777888874 466777887 799999999999999999999974211233444 44466789999
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccCceeec-----cccc-cceEEEecCCCcccCCCcceeeeeCH-HHHHHhccC
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR-----MDEW-GIDVALTGSQKALSLPTGMGIVCASP-KALEASKTA 225 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~-----~~~~-~~d~~~~s~~K~~~g~~g~g~~~~~~-~~~~~~~~~ 225 (367)
+.|+++|.++|++ +|+|+++|++++.+.+..+ +... ++|++++++|||+.+|.|+|++++++ +..+.+...
T Consensus 281 iDpl~eIa~i~~~--~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~~~~~~~ 358 (522)
T TIGR03799 281 IDPLDEMADIAQE--LGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPALMSAIEHH 358 (522)
T ss_pred cCCHHHHHHHHHH--cCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCHHHHHHhccC
Confidence 9999999999999 9999999999987665443 3332 68999999999999999999999875 444444321
Q ss_pred CCCceee---chHH-HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCC
Q 017726 226 KSVRVFF---DWKD-YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQK 300 (367)
Q Consensus 226 ~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 300 (367)
..|. ...+ ....++.+ .+... +.++.+++.+...|++++.++..++++++.+.|++. +++++.+
T Consensus 359 ---~~Yl~~~~~~d~~~~~legs------R~~~a-l~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~- 427 (522)
T TIGR03799 359 ---AEYILRKGSKDLGSHTLEGS------RPGMA-MLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTE- 427 (522)
T ss_pred ---cchhcCCCCCccccceeecC------cchHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecC-
Confidence 1111 0000 01123322 33322 468999999999999999999999999999999997 8999886
Q ss_pred CccCCCceEEEEc-CCCCC-----------------H----HHHHHHHHhhCCeEEccC-CCC----CCC-cEEEEeecC
Q 017726 301 EEWFSDTVTAVIV-PSHIN-----------------S----SEIVRRAWQRYNLSLGLG-LNK----VAG-KVFRIGHLG 352 (367)
Q Consensus 301 ~~~~~~~~~~~~~-~~~~~-----------------~----~~l~~~L~~~~gv~v~~g-~~~----~~~-~~iRi~~~~ 352 (367)
....+++|+. |.+.. . ..+.+++.+.-.+++... ..+ ..+ ..||+++.+
T Consensus 428 ---p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~n 504 (522)
T TIGR03799 428 ---PELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLAN 504 (522)
T ss_pred ---CCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecC
Confidence 2345788886 32210 1 245566655523333321 111 112 359999988
Q ss_pred CCCHHHHHHhhhh
Q 017726 353 HLNEVMFNFQLLF 365 (367)
Q Consensus 353 ~~~~~~~~~~~l~ 365 (367)
..+..+....+|+
T Consensus 505 p~tt~~~i~~~l~ 517 (522)
T TIGR03799 505 PLTTHEILQDILD 517 (522)
T ss_pred CCCCHHHHHHHHH
Confidence 8777766666665
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-26 Score=207.81 Aligned_cols=295 Identities=14% Similarity=0.081 Sum_probs=202.4
Q ss_pred CCCChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCc
Q 017726 17 PVHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQ 94 (367)
Q Consensus 17 p~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~ 94 (367)
|.++++.+++++.+.... ...|. .....++|+.++++++++++ +|++|+|+++++..++..+ +||+|+++.|.|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~Y~-~~g~~~lr~~ia~~~~~~~~-~I~~t~G~~~~l~~~~~~~--~gd~V~v~~P~y 104 (337)
T PRK03967 29 PFDLPEELKEEIFEELKRVPFNRYP-HITSDPLREAIAEFYGLDAE-NIAVGNGSDELISYLVKLF--EGKHIVITPPTF 104 (337)
T ss_pred CCCCCHHHHHHHHHHhhcCccccCC-CCCHHHHHHHHHHHhCcCcc-eEEEcCCHHHHHHHHHHHh--CCCeEEEeCCCh
Confidence 446677788887764321 12222 24567999999999998764 5999999999999887765 799999999977
Q ss_pred chHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEE
Q 017726 95 FSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLV 174 (367)
Q Consensus 95 ~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~ 174 (367)
..+ ...++..|++++.++.+.++.+|++.+++.+ ++++++++++|+||||.+++.+++.+++ + +++++|+
T Consensus 105 ~~~--~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~-----~~~~~v~~~~P~NPtG~~~~~~~l~~i~-~--~~~~ii~ 174 (337)
T PRK03967 105 GMY--SFYAKLNGIPVIDVPLKEDFTIDGERIAEKA-----KNASAVFICSPNNPTGNLQPEEEILKVL-E--TGKPVVL 174 (337)
T ss_pred HHH--HHHHHHcCCeEEEeecCCCCCcCHHHHHHhc-----cCCCEEEEeCCCCCCCCCCCHHHHHHHH-h--cCCEEEE
Confidence 643 3456788999999999877789999998764 3568999999999999999999999998 4 6999999
Q ss_pred eeeeccCcee--ec-cccccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCC
Q 017726 175 DGVSSICAID--FR-MDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT 250 (367)
Q Consensus 175 D~~~~~~~~~--~~-~~~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (367)
|++|...... .. .......+++.|++|.++ ...++|++++++++++++..... +++
T Consensus 175 De~y~~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~~i~~~~~~~~--------------------~~~ 234 (337)
T PRK03967 175 DEAYAEFSGKSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANEEIIDALYRIKP--------------------PFS 234 (337)
T ss_pred ECchhhhcccchHHHHhhCCCEEEEecchHhhcchhhhheeeecCHHHHHHHHhhcC--------------------CCC
Confidence 9998743211 01 111134688899999995 22347999999999887764321 223
Q ss_pred CcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhC
Q 017726 251 PSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRY 330 (367)
Q Consensus 251 ~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 330 (367)
.+.....++..++.... . ..+.+++..+.++.+.+.|.+.. . + ..+.++++++ .+.+.|.++
T Consensus 235 ~~~~~q~~~~~~l~~~~-~-~~~~~~~~~~~r~~l~~~L~~~~---~-~----~~~~~~~~~~-------~~~~~l~~~- 296 (337)
T PRK03967 235 LNILTMKIVRLALDHYD-L-IEERIDYIIKERERVRRELGEYA---Y-P----SDANFLLLKL-------DAYDYLLEN- 296 (337)
T ss_pred CCHHHHHHHHHHHhCHH-H-HHHHHHHHHHHHHHHHHHhccCc---C-C----CCCcEEEEhH-------HHHHHHHHC-
Confidence 44443344444443211 1 34444555666777777776542 1 2 2344566655 267888654
Q ss_pred CeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 331 NLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 331 gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
||.++++.. ...+++||++ +..++.+.+.++|.
T Consensus 297 gi~v~~~~~-~~~~~~Ri~~-~~~~~~~~l~~~l~ 329 (337)
T PRK03967 297 GIVVRKLSG-RLEGHIRVTV-GKREENDEFIKALK 329 (337)
T ss_pred CEEEEeCCC-CCCCeEEEec-CCHHHHHHHHHHHH
Confidence 999986532 3356899995 44455555555554
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=207.57 Aligned_cols=302 Identities=16% Similarity=0.094 Sum_probs=210.4
Q ss_pred ChHHHHHHHccCCCC----CCC----CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 20 IPDQVIRAMNRNNED----YRS----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~----~~~----~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
.++.+.+++.+.... ..+ .+..+..+++++.+++++|.+ +.+++++| ++++..++.+++.+||.|++.+
T Consensus 57 ~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~~--~~i~~tsG-~~a~~~~~~~l~~~gd~vi~~~ 133 (397)
T PRK06939 57 NHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGTE--DAILYSSC-FDANGGLFETLLGKEDAIISDA 133 (397)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCCC--cEEEEcCh-HHHHHHHHHHhCCCCCEEEEEh
Confidence 466677766664321 111 123467789999999999975 34666555 8899988888999999999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCC--CCccEEEEEecCCCccccccHHHHHHHHHhcCCC
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA--HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHP 169 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~--~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~ 169 (367)
+.|++.. ..++..|.++..++. .|++++++.+++... .++++|+..+..|++|.+.++++|.++|++ +|
T Consensus 134 ~~~~~~~--~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~--~~ 204 (397)
T PRK06939 134 LNHASII--DGVRLCKAKRYRYAN-----NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADK--YD 204 (397)
T ss_pred hhhHHHH--HHHHhcCCceEEeCC-----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHH--hC
Confidence 9887754 345667888777754 378999888874211 267888888889999999999999999999 99
Q ss_pred cEEEEeeeeccCceee------ccc--cccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHh
Q 017726 170 ALFLVDGVSSICAIDF------RMD--EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFY 241 (367)
Q Consensus 170 ~~vi~D~~~~~~~~~~------~~~--~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (367)
+++|+|++|+.+.... ... ..++|++++|+||+++|++ +|++++++++++.+...... ..
T Consensus 205 ~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r-~G~v~~~~~~~~~l~~~~~~-~~---------- 272 (397)
T PRK06939 205 ALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGAS-GGYTAGRKEVIDWLRQRSRP-YL---------- 272 (397)
T ss_pred CEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccC-ceEEEeCHHHHHHHHHhCcc-cc----------
Confidence 9999999996543211 111 1146899999999997665 59999999998877642110 00
Q ss_pred hcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHH
Q 017726 242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSE 321 (367)
Q Consensus 242 ~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (367)
...+++...+.++.++++.+.+ .+++++++.++++++.+.|+++|+++..+ ... ++.+.++.+.+..+
T Consensus 273 -----~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~----~~~-~~~~~~~~~~~~~~ 340 (397)
T PRK06939 273 -----FSNSLAPAIVAASIKVLELLEE--SDELRDRLWENARYFREGMTAAGFTLGPG----EHP-IIPVMLGDAKLAQE 340 (397)
T ss_pred -----ccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCCcCCC----CCC-EEEEEECCHHHHHH
Confidence 0112334334555666766643 35778889999999999999988766543 222 34444443345678
Q ss_pred HHHHHHhhCCeEEccCCCCC---CCcEEEEeecCCCCHHH
Q 017726 322 IVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 322 l~~~L~~~~gv~v~~g~~~~---~~~~iRi~~~~~~~~~~ 358 (367)
+++.|.++ ||.+.++..+. ...++|+++...+++++
T Consensus 341 ~~~~L~~~-gI~v~~~~~~~~~~~~~~iRi~~~~~~~~~~ 379 (397)
T PRK06939 341 FADRLLEE-GVYVIGFSFPVVPKGQARIRTQMSAAHTKEQ 379 (397)
T ss_pred HHHHHHHC-CceEeeeCCCCCCCCCceEEEEECCCCCHHH
Confidence 99999877 99988643221 23579998766555444
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-26 Score=207.82 Aligned_cols=286 Identities=14% Similarity=0.026 Sum_probs=193.9
Q ss_pred CChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHh----c---CCCCceEEecCChhHHHHHHHHcc-CCCCCeEEEE
Q 017726 19 HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIF----K---TTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISF 90 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~----~---~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl~~ 90 (367)
+.++.+.+++.+... ...|.......++|+.+++++ | +++ ++|++|+|+++++..++..+ +++||.|+++
T Consensus 34 ~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~-~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~ 111 (357)
T TIGR03539 34 PVPPLIRAALAAAAD-APGYPQTWGTPELREAIVDWLERRRGVPGLDP-TAVLPVIGTKELVAWLPTLLGLGPGDTVVIP 111 (357)
T ss_pred CCCHHHHHHHHHHHh-hCCCCcccCCHHHHHHHHHHHHHhcCCCCCCc-CeEEEccChHHHHHHHHHHHcCCCCCEEEEC
Confidence 346667777765432 223333344556777777766 4 434 56999999999999888776 7999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcC
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR 167 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~ 167 (367)
+|+|+++. ..++..|++++.++ +++.+ ++ +++++|++++|+||||.+++ +++|.++|++
T Consensus 112 ~p~y~~~~--~~~~~~g~~~~~v~-------~~~~l----~~---~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~-- 173 (357)
T TIGR03539 112 ELAYPTYE--VGALLAGATPVAAD-------DPTEL----DP---VGPDLIWLNSPGNPTGRVLSVDELRAIVAWARE-- 173 (357)
T ss_pred CCCcHHHH--HHHHhcCCEEeccC-------Chhhc----Cc---cCccEEEEeCCCCCcCccCCHHHHHHHHHHHHH--
Confidence 99887654 34567888877663 23322 21 36799999999999999997 5568888888
Q ss_pred CCcEEEEeeeeccCcee------ecc----ccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechH
Q 017726 168 HPALFLVDGVSSICAID------FRM----DEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~------~~~----~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (367)
+|+++|+|++|...... ++. ......+++.|++|.++ .+| +|++++++++++++.....
T Consensus 174 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~-~~G~R~G~~i~~~~~~~~~~~~~~-------- 244 (357)
T TIGR03539 174 RGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSN-LAGYRAGFVAGDPALVAELLTVRK-------- 244 (357)
T ss_pred cCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccC-CCceeEEEEecCHHHHHHHHHHHh--------
Confidence 99999999998632211 110 01124588999999973 344 6999999998887753211
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS 315 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 315 (367)
.. .+.++.....++..++.. ...+++.++.++++++++.+.|++.|+.+..+ .++.+++++++
T Consensus 245 -------~~---~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~p----~~~~~~~~~~~- 307 (357)
T TIGR03539 245 -------HA---GLMVPAPVQAAMVAALGD--DGHVAEQKARYAARRAQLKPALEKAGFRIDHS----EAGLYLWATRG- 307 (357)
T ss_pred -------hc---ccCCCHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCC----CccEEEEEECC-
Confidence 01 112444333344444432 12256678888899999999999888777665 46667777764
Q ss_pred CCCHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecC
Q 017726 316 HINSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLG 352 (367)
Q Consensus 316 ~~~~~~l~~~L~~~~gv~v~~g~~~~--~~~~iRi~~~~ 352 (367)
.+..++.+.|. ++||.+.+|..+. ..+++||++..
T Consensus 308 -~~~~~~~~~l~-~~gV~v~pg~~f~~~~~~~iRis~~~ 344 (357)
T TIGR03539 308 -EDAWDTVDRLA-ELGILVAPGDFYGPAGSQHVRVALTA 344 (357)
T ss_pred -CCHHHHHHHHH-hCCEEECCccccCCCCCCeEEEEecC
Confidence 25678888885 5599999985322 24689999765
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=213.13 Aligned_cols=316 Identities=16% Similarity=0.095 Sum_probs=195.0
Q ss_pred ChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHh------cC-CC--CceEEecCChhHHHHHHHHc-----cCCCCC
Q 017726 20 IPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIF------KT-TS--GTPFLIPTTGTGAWESALTN-----TLSPGD 85 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~------~~-~~--~~~v~~~~ggt~al~~~~~~-----~~~~gd 85 (367)
+|+.+.++.... ... .|.......++|+.+++.+ +. .. +++|++|+|+++|+..++.+ +++|||
T Consensus 114 ~~~~v~e~~~~~-~~~-~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD 191 (527)
T PRK09275 114 ADEFVYELVDGI-IGD-NYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLLKAGD 191 (527)
T ss_pred CCHHHHHHHHHH-hcC-CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcCCCCC
Confidence 355555533332 222 2433455567777777632 11 12 34699999999999988875 689999
Q ss_pred eEEEEeCCcchHHHHHHHHHhC--CceEEEeCC--CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHH
Q 017726 86 RIISFLIGQFSLLWIDQQQRLN--FNVDVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSK 158 (367)
Q Consensus 86 ~vl~~~~~~~~~~~~~~~~~~g--~~~~~v~~~--~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~ 158 (367)
+|++++|.|+.+. ..++..| .+++.++.+ .++.+|.++++++++ +++|+|++++|+||||.+++ +++
T Consensus 192 ~Vlv~~P~y~~Y~--~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~----~~tkai~l~nP~NPTG~v~s~e~l~~ 265 (527)
T PRK09275 192 KIALMTPIFTPYL--EIPELPRYDLEVVHINADEENEWQYPDSELEKLRD----PSIKALFLVNPSNPPSVAMSDESLEK 265 (527)
T ss_pred EEEEeCCChHHHH--HHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcC----CCCCEEEEeCCcCCcCCCCCHHHHHH
Confidence 9999999776653 4445554 555555543 347889999999876 57899999999999999998 666
Q ss_pred HHHHHHhcCCCcEEEEeeeeccCceee-ccc--cccceEEEecCCCcccCCCc--ceeeeeCHH-----HHHHhccC---
Q 017726 159 VRKLLDEYRHPALFLVDGVSSICAIDF-RMD--EWGIDVALTGSQKALSLPTG--MGIVCASPK-----ALEASKTA--- 225 (367)
Q Consensus 159 i~~~~~~~~~~~~vi~D~~~~~~~~~~-~~~--~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~-----~~~~~~~~--- 225 (367)
|.++|++++++++||+|++|....... +.. .....+++.|+||.++ .+| +|+++++++ +++.+...
T Consensus 266 I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~-mtG~RlG~i~~~~~~v~~~~i~~l~~~~~~ 344 (527)
T PRK09275 266 IADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYFG-ATGWRLGVIALHEDNVFDKLIAKLPEEKKK 344 (527)
T ss_pred HHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhcc-CcHhHHhhhhcCchhHHHHHHHhccHHHHH
Confidence 777886534799999999987543211 111 1135789999999984 555 699999886 44433100
Q ss_pred ----CCCcee--------ec-hHHHHHHhhcCCccCCCCcHHHHH-HHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHH
Q 017726 226 ----KSVRVF--------FD-WKDYIKFYNLGTFWPYTPSIQLLY-GLRAALDLIFE--EGLENVIERHRRLGKATRLAV 289 (367)
Q Consensus 226 ----~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~-al~~al~~~~~--~g~~~~~~~~~~~~~~l~~~L 289 (367)
+..+.. .+ ............ +...+.+.+.. ++.+....+.. .-.+++++.++++++.+.+.|
T Consensus 345 ~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~-t~~~s~p~Q~a~al~~~~all~~~~~~~~~~~~~~~~Rr~~l~~~L 423 (527)
T PRK09275 345 ELDKRYSSLTTDPEKLKFIDRLVADSRQVALNH-TAGLSTPQQVQMALFSLFALLDEEDAYKKAMKDIIRRRYKALYEGL 423 (527)
T ss_pred HHHhhhhhccCCcchhhhHHHHHHHHHHHHHhh-ccCCCCHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHc
Confidence 000000 00 000001111111 11223332222 22112222221 115667778888888887776
Q ss_pred HHcCCcc--ccCCCccCCCceEEEEcCC----------------CCCHHHHHHHHHhhCCeEEccCCCCC-CCcEEEEee
Q 017726 290 EAWGLKN--CTQKEEWFSDTVTAVIVPS----------------HINSSEIVRRAWQRYNLSLGLGLNKV-AGKVFRIGH 350 (367)
Q Consensus 290 ~~~g~~~--~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~~~L~~~~gv~v~~g~~~~-~~~~iRi~~ 350 (367)
|+.+ ..+ .+.++++++++. ..+..+++.+|.++.||.+.||..+. ...++|||+
T Consensus 424 ---g~~~~~~~p----~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e~gV~v~PG~~Fg~~~~~vRis~ 496 (527)
T PRK09275 424 ---GLPEPEDPN----NAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEETGVVLLPGGGFGGPEWSVRVSL 496 (527)
T ss_pred ---CCCCcCCCC----CeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhcCCEEEeCchhhCCCCCeEEEEE
Confidence 4433 233 466677777632 13577899999999999999996553 346799997
Q ss_pred cC
Q 017726 351 LG 352 (367)
Q Consensus 351 ~~ 352 (367)
..
T Consensus 497 a~ 498 (527)
T PRK09275 497 AN 498 (527)
T ss_pred ec
Confidence 54
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-25 Score=203.04 Aligned_cols=281 Identities=17% Similarity=0.195 Sum_probs=199.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 120 (367)
.+...++++.+++++|.+. .++++ +|++++..++.+++++||.|++..+.|.+.. ..+...|+++..++ .
T Consensus 77 ~~l~~~l~~~l~~~~g~~~--~i~~~-sG~~a~~~a~~~~~~~gd~vi~~~~~~~~~~--~~~~~~g~~~~~~~-----~ 146 (385)
T TIGR01825 77 LRLHEELEEKLAKFKKTEA--ALVFQ-SGFNTNQGVLSALLRKGDIVLSDELNHASII--DGLRLTKATKKIYK-----H 146 (385)
T ss_pred cHHHHHHHHHHHHHhCCCc--EEEEC-cHHHHHHHHHHHhCCCCCEEEEEccccHHHH--HHHHhcCCceEEeC-----C
Confidence 4678889999999988643 45665 5578888888888999999998888766643 33455677766553 3
Q ss_pred CCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCcee---------ecccccc
Q 017726 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID---------FRMDEWG 191 (367)
Q Consensus 121 ~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~---------~~~~~~~ 191 (367)
+|++++++.+.+...+++++|++++++|++|.+.|+++|.++|++ +|+++|+|++|+.+... ++.. .+
T Consensus 147 ~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~ 223 (385)
T TIGR01825 147 ADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAER--YGAVTYVDDAHGSGVMGEAGRGTVHHFGLE-DK 223 (385)
T ss_pred CCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHHHHHH--hCCEEEEECcccccCcCCCCCccHhhcCCC-cC
Confidence 688999988876432468999999999999999999999999999 99999999999765332 1222 46
Q ss_pred ceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhCh
Q 017726 192 IDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGL 271 (367)
Q Consensus 192 ~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~ 271 (367)
.|+++.|++|+++ ..| |+++.++++++.+...... +.. + ...+...++++.++++.+.+.
T Consensus 224 ~~i~~~s~sK~~~-~~g-G~~~~~~~~~~~~~~~~~~-~~~-----------~----~~~~~~~~~a~~~al~~~~~~-- 283 (385)
T TIGR01825 224 VDIQVGTLSKAIG-VVG-GYAAGHKELIEYLKNRARP-FLF-----------S----TAQPPAVVAALAAAVDELQRS-- 283 (385)
T ss_pred CcEEEEeccHHhh-cCC-CEEecCHHHHHHHHHhCcc-ccc-----------c----CCCCHHHHHHHHHHHHHHhcC--
Confidence 7899999999995 555 8899999888877532110 000 1 123444456777777766543
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC---CCcEEEE
Q 017726 272 ENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV---AGKVFRI 348 (367)
Q Consensus 272 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~---~~~~iRi 348 (367)
.+..++..++++++.+.|+++|+++..+. .+ ++.+..+...+..++++.|.++ ||.+.++..+. ...++|+
T Consensus 284 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~~-~~~~~~~~~~~~~~~~~~L~~~-gi~v~~~~~~~~~~~~~~iRi 357 (385)
T TIGR01825 284 PELMERLWDNTRFFKAGLGKLGYDTGGSE----TP-ITPVVIGDEKAAQEFSRRLFDE-GIFAQSIVFPTVPRGTARIRN 357 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCC----CC-EEEEEECCHHHHHHHHHHHHHC-CcEEcccCCCCCCCCCceEEE
Confidence 24567778899999999999888877652 22 4555553323457899999877 99986432221 2357999
Q ss_pred eecCCCCHHHHH
Q 017726 349 GHLGHLNEVMFN 360 (367)
Q Consensus 349 ~~~~~~~~~~~~ 360 (367)
++...++++++.
T Consensus 358 ~~~~~~~~e~i~ 369 (385)
T TIGR01825 358 IPTAEHTKDDLD 369 (385)
T ss_pred EEcCCCCHHHHH
Confidence 887666665544
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-25 Score=204.62 Aligned_cols=316 Identities=16% Similarity=0.153 Sum_probs=208.4
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCCC----CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC-
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNEDY----RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS- 82 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~~----~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~- 82 (367)
++.|+-.+.++.+-+++.+++.+..... ..+...+...++++.+++++|.+. .++.++|++++..++..+..
T Consensus 53 s~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~~~---~~~~~sG~~an~~ai~~l~~~ 129 (407)
T PRK09064 53 SNDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGKEA---ALVFTSGYVSNDATLSTLAKL 129 (407)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCCCc---EEEECcHHHHHHHHHHHHhCC
Confidence 4555544444444444444444443321 112345778899999999999532 45557778888877766543
Q ss_pred -CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHH
Q 017726 83 -PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRK 161 (367)
Q Consensus 83 -~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~ 161 (367)
+++.|+.....|.+ .. ..+...+.++..++. .|+++++++++..+.+++++|++++++|++|.+.|+++|.+
T Consensus 130 ~~~~~i~~~~~~h~s-~~-~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~~i~~ 202 (407)
T PRK09064 130 IPDCVIFSDELNHAS-MI-EGIRRSRCEKHIFRH-----NDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEICD 202 (407)
T ss_pred CCCCEEEEeCcchHH-HH-HHHHHcCCcEEEECC-----CCHHHHHHHHHhccCCCCeEEEEeCCCCCCccccCHHHHHH
Confidence 66544444333333 22 334556777665554 27888888886432146799999999999999999999999
Q ss_pred HHHhcCCCcEEEEeeeeccCcee-----e-cccc--ccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeec
Q 017726 162 LLDEYRHPALFLVDGVSSICAID-----F-RMDE--WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFD 233 (367)
Q Consensus 162 ~~~~~~~~~~vi~D~~~~~~~~~-----~-~~~~--~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 233 (367)
+|++ +|+++++|++|+.|... + .... ...|+++.+++|.++ ..| |++++++++++.+.....+ +.
T Consensus 203 l~~~--~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g-~~G-G~~~~~~~~~~~l~~~~~~-~~-- 275 (407)
T PRK09064 203 LADK--YNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFG-VMG-GYIAGSAALVDAVRSYAPG-FI-- 275 (407)
T ss_pred HHHH--cCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhh-ccC-ceEecCHHHHHHHHHhCcc-cc--
Confidence 9999 99999999999754321 0 1111 146899999999994 666 8999999988776532111 00
Q ss_pred hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEc
Q 017726 234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIV 313 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 313 (367)
+..+.+...+++..++++.+.+. ...+++..++++++.+.|+++|++++.+ .+ .++.+.+
T Consensus 276 -------------~t~~~~~~~~~aa~~al~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~-~iv~i~~ 335 (407)
T PRK09064 276 -------------FTTSLPPAIAAAALASIRHLKES--NEERERHQERAAKLKAALDAAGIPVMPN----ES-HIVPVMV 335 (407)
T ss_pred -------------ccCcCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCCCCCC----CC-CEEEEEe
Confidence 01124444556666778777665 3456788999999999999998887664 23 3556666
Q ss_pred CCCCCHHHHHHHHHhhCCeEEccCCCCC---CCcEEEEeecCCCCHHHHH
Q 017726 314 PSHINSSEIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 314 ~~~~~~~~l~~~L~~~~gv~v~~g~~~~---~~~~iRi~~~~~~~~~~~~ 360 (367)
++..+..++.++|.+++||.+.+...+. ...++||++...++.+|+.
T Consensus 336 ~~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~ 385 (407)
T PRK09064 336 GDPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMID 385 (407)
T ss_pred CCHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHH
Confidence 4333467899988766799998753322 2357999988777665444
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-26 Score=222.12 Aligned_cols=306 Identities=12% Similarity=0.056 Sum_probs=220.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEecCChh----HHHHHHHHccCCC-CC----eEEEEeCCcchHHHHHHHHHhCCce
Q 017726 40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGT----GAWESALTNTLSP-GD----RIISFLIGQFSLLWIDQQQRLNFNV 110 (367)
Q Consensus 40 ~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt----~al~~~~~~~~~~-gd----~vl~~~~~~~~~~~~~~~~~~g~~~ 110 (367)
+.+...++|+.+++++|. +.|.|+++++ +++.+++.++.++ || .|+++..+|.++. ..+...|+++
T Consensus 566 ~~~~~~~~r~~la~i~g~---~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~--a~a~~~G~~v 640 (993)
T PLN02414 566 YQEMFEDLGDLLCEITGF---DSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNP--ASAAMCGMKI 640 (993)
T ss_pred HHHHHHHHHHHHHHHhCC---CeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCH--HHHHHCCCEE
Confidence 567788999999999998 3499999998 8999999998766 87 8999999999875 2234479999
Q ss_pred EEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCc-eeecccc
Q 017726 111 DVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICA-IDFRMDE 189 (367)
Q Consensus 111 ~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~-~~~~~~~ 189 (367)
+.++++.++.+|+++|++++++++ +++++|++++|+|.+|...|+++|.++||+ +|+++++|+++..+. ...++.+
T Consensus 641 v~v~~d~~G~vDle~L~~~i~~~~-~~ta~V~vt~pSn~gg~e~~I~eI~~iah~--~Galv~vDgAq~~a~~~l~~p~~ 717 (993)
T PLN02414 641 VVVGTDAKGNINIEELRKAAEAHK-DNLAALMVTYPSTHGVYEEGIDEICDIIHD--NGGQVYMDGANMNAQVGLTSPGF 717 (993)
T ss_pred EEeccCCCCCcCHHHHHHHHhccC-CCeEEEEEECCCccccccchHHHHHHHHHH--cCCEEEEEecCHHhccCcCCccc
Confidence 999998889999999999998654 478999999999999999999999999999 999999999998766 3445567
Q ss_pred ccceEEEecCCCcccCCC-----cceeeeeCHHHHHHhccCCCCceeechHHHHHHhh---cCCccCCCCcH---HHHHH
Q 017726 190 WGIDVALTGSQKALSLPT-----GMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYN---LGTFWPYTPSI---QLLYG 258 (367)
Q Consensus 190 ~~~d~~~~s~~K~~~g~~-----g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~a 258 (367)
.|+|++++|.||+|++|. |+|++++++.+...+..+...... . +..+++ .|+ ....+. ..+..
T Consensus 718 ~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~-~---~~~r~~~s~iGt--~~~a~~g~al~l~~ 791 (993)
T PLN02414 718 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTG-G---IPRPEKTQPLGT--ISAAPWGSALILPI 791 (993)
T ss_pred cCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCC-C---cccccCCCCcCC--ccchhhhhHHHHHH
Confidence 899999999999998664 489999999887766644211100 0 011111 122 111122 22233
Q ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEE-cCC--CCCHHHHHHHHHhhCCeEE
Q 017726 259 LRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVI-VPS--HINSSEIVRRAWQRYNLSL 334 (367)
Q Consensus 259 l~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~l~~~L~~~~gv~v 334 (367)
....+..+..+|+++..++...+++|++++|++. ++....+.+....-+++.++ +++ +.+..++.++|. ++||..
T Consensus 792 A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~-d~Giha 870 (993)
T PLN02414 792 SYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLM-DYGFHA 870 (993)
T ss_pred HHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEeccccccccCCCHHHHHHHHH-HcCcEE
Confidence 3333444555678888999999999999999884 44443322111111122222 211 366789999998 668875
Q ss_pred ccCCCCCCCcEEEEeecCCCCHHHHHH
Q 017726 335 GLGLNKVAGKVFRIGHLGHLNEVMFNF 361 (367)
Q Consensus 335 ~~g~~~~~~~~iRi~~~~~~~~~~~~~ 361 (367)
..-..+ ..+.+||+..-+++.+|+++
T Consensus 871 pt~~~p-v~~~lmiepTE~~skeelDr 896 (993)
T PLN02414 871 PTMSWP-VPGTLMIEPTESESKAELDR 896 (993)
T ss_pred eeeccc-cCCEEEEEeeeeCCHHHHHH
Confidence 431222 35679999888887665543
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=189.99 Aligned_cols=313 Identities=12% Similarity=0.049 Sum_probs=223.2
Q ss_pred CChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhcCC-----CCceEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 19 HIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTT-----SGTPFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~-----~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
++.+.+.+|+.+.... ..+|.+..+...+|+++|++++-+ .+++|++|+|.++|+++++.++.+||..|+++.
T Consensus 78 ~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aNILlPr 157 (447)
T KOG0259|consen 78 RTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGANILLPR 157 (447)
T ss_pred cCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCCceecCC
Confidence 4567777777775444 446667788889999999997643 345699999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhc
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEY 166 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~ 166 (367)
|+++-+. ..++..|++++..+.- .+|.+|++.+|++++| +|.++++.+|+||.|.+++ +++|++.|++
T Consensus 158 PGfp~Y~--~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DE----NT~AivviNP~NPcGnVys~~HL~kiae~A~k- 230 (447)
T KOG0259|consen 158 PGFPLYD--TRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADE----NTVAIVVINPNNPCGNVYSEDHLKKIAETAKK- 230 (447)
T ss_pred CCCchHH--HhhhhcCceeEeecccCcccceechHHHHHhhcc----CeeEEEEeCCCCCCcccccHHHHHHHHHHHHH-
Confidence 9876543 4577889999988763 4689999999999996 5599999999999999986 8899999999
Q ss_pred CCCcEEEEeeeeccCce---e-eccc---cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHH
Q 017726 167 RHPALFLVDGVSSICAI---D-FRMD---EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDY 237 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~---~-~~~~---~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (367)
++++||.|+.|..... + +++. ..-..+.+++.+|.+- -+| +|+++..+..- .+.... . .+..
T Consensus 231 -lgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~-VPGWRlGWi~~hD~~g-vf~~~~----~--~q~~ 301 (447)
T KOG0259|consen 231 -LGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWI-VPGWRLGWIALHDPRG-VFRDTK----V--VQGI 301 (447)
T ss_pred -hCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccc-cCCceeeeEEEecccc-cccchH----H--HHHH
Confidence 9999999999864322 1 1222 2234577788889775 444 79988765420 011000 0 0111
Q ss_pred HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCc-cccCCCccCCCceEEEEcC-
Q 017726 238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLK-NCTQKEEWFSDTVTAVIVP- 314 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~~~~~~~~~~- 314 (367)
.+.++.. + .|+.....|+..-|....++-.+....-...+++...++|++. ++. ...| .+..+.++.+.
T Consensus 302 ~~~~~~~---~-~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kP----eg~mylmv~l~~ 373 (447)
T KOG0259|consen 302 KNFLDII---P-GPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKP----EGCMYLMVKLNL 373 (447)
T ss_pred HHHHhcc---C-CccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCC----CcceEEEeccch
Confidence 1112211 1 2444333344433333333336777888899999999999997 776 4445 35556666652
Q ss_pred ----CCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCC
Q 017726 315 ----SHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLN 355 (367)
Q Consensus 315 ----~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~ 355 (367)
+-.+.-+|++.|.++..+.+.||......+++||++.-..+
T Consensus 374 s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i~~~~~ 418 (447)
T KOG0259|consen 374 SLFPDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIVITVEEE 418 (447)
T ss_pred hhhccccccHHHHHHHhhhcceEEeccccccCCCeEEEEEccChH
Confidence 22356789999999889999999988888999998644433
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-25 Score=205.68 Aligned_cols=316 Identities=14% Similarity=0.104 Sum_probs=215.6
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCCC----CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCC
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDYR----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPG 84 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~g 84 (367)
..++..+++..+-+++.+++.++..... .+...+...++++.|+++++.++ .+++++|++ ++..++.+++++|
T Consensus 117 ~~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~~~--~i~~s~G~~-a~~sai~a~~~~g 193 (481)
T PLN02822 117 ANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTPD--SILYSYGLS-TIFSVIPAFCKKG 193 (481)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCCCC--EEEECCHHH-HHHHHHHHhCCCC
Confidence 3344444555555666666666443212 24456889999999999999764 588877665 6788888999999
Q ss_pred CeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccC-----CCCc-cEEEEEecCCCccccccHHH
Q 017726 85 DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT-----AHTI-KAICIVHNETATGVTNNLSK 158 (367)
Q Consensus 85 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~-----~~~~-~lv~~~~~~n~tG~~~~~~~ 158 (367)
|.|++....|++. ...+...+.+++.++.+ |.++++..+++.. .+++ ++|+++.+++++|.+.|+++
T Consensus 194 d~Ii~d~~~H~s~--~~~~~ls~~~~~~~~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~ 266 (481)
T PLN02822 194 DIIVADEGVHWGI--QNGLYLSRSTIVYFKHN-----DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDE 266 (481)
T ss_pred CEEEEeCCccHHH--HHHHHHcCCeEEEECCC-----CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHH
Confidence 9888765544443 24456678888888766 4555555554311 0234 78999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEeeeeccCcee---------eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCc
Q 017726 159 VRKLLDEYRHPALFLVDGVSSICAID---------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR 229 (367)
Q Consensus 159 i~~~~~~~~~~~~vi~D~~~~~~~~~---------~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~ 229 (367)
|.++|++ ||+++++|++|+++.+. +++....+|+++.|++|.++ +.| |++++++++++.+..... .
T Consensus 267 i~~l~~k--~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg-~~G-G~i~g~~~ii~~~~~~~~-~ 341 (481)
T PLN02822 267 IVRLKEK--YRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALA-TEG-GFCTGSARVVDHQRLSSS-G 341 (481)
T ss_pred HHHHHHH--cCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhh-hCC-eEEEcCHHHHHHHHhcCC-c
Confidence 9999999 99999999999866532 11211257999999999994 666 999999999887663211 1
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCce
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTV 308 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~ 308 (367)
.++ ..+.+...+.+..++++.+.+. .+++++++++.+++++.|++. |+.+..+ ...++
T Consensus 342 --------------~~f-sa~lPp~~~~Aa~~aL~~l~~~--~~~~~~l~~~~~~l~~~L~~~~g~~~~~~----~~spi 400 (481)
T PLN02822 342 --------------YVF-SASLPPYLASAAITAIDVLEDN--PSVLAKLKENIALLHKGLSDIPGLSIGSN----TLSPI 400 (481)
T ss_pred --------------eee-ccccCHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHhcCCcccCCC----CCCCE
Confidence 111 1122333334444577766542 567889999999999999997 8877654 34557
Q ss_pred EEEEcCCCC-----C---HHHHHHHHHhhCCeEEccCCCCC-----CCcEEEEeecCCCCHHHHH
Q 017726 309 TAVIVPSHI-----N---SSEIVRRAWQRYNLSLGLGLNKV-----AGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 309 ~~~~~~~~~-----~---~~~l~~~L~~~~gv~v~~g~~~~-----~~~~iRi~~~~~~~~~~~~ 360 (367)
+++.+++.. + ..+++++|.+++||.+.++..+. .+..+|+++....+++|+.
T Consensus 401 ~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~ 465 (481)
T PLN02822 401 VFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDIL 465 (481)
T ss_pred EEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHH
Confidence 777774310 1 25788998866799999753221 1346999876656555443
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-26 Score=206.83 Aligned_cols=287 Identities=16% Similarity=0.068 Sum_probs=194.0
Q ss_pred ChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHh----cCC--CCceEEecCChhHHHHHHHHcc-CCCCCeEEEEeC
Q 017726 20 IPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIF----KTT--SGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLI 92 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~--~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl~~~~ 92 (367)
.++.+.+++.+... ...|.......++|+.+++++ |.+ .+++|++|+|+++++..++..+ +.+||.|+++.|
T Consensus 41 ~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p 119 (364)
T PRK07865 41 VPPVIQEALAAAAD-APGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPEL 119 (364)
T ss_pred CCHHHHHHHHHHHh-hCCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHcCCCCCEEEECCC
Confidence 35666777665322 223433344567777787777 432 2346999999999999887776 789999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCCC
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHP 169 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~ 169 (367)
.|+.+. ..++..|+++..++ ++++++. +++++|++++|+||||.+++ +++|.++|++ +|
T Consensus 120 ~y~~~~--~~~~~~g~~~~~~~-------~~~~l~~-------~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~--~~ 181 (364)
T PRK07865 120 AYPTYE--VGARLAGATVVRAD-------SLTELGP-------QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARE--RG 181 (364)
T ss_pred CcccHH--HHHHhcCCEEEecC-------ChhhCCc-------ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHH--cC
Confidence 877653 44677899888774 2233221 36799999999999999987 4567778888 99
Q ss_pred cEEEEeeeeccCcee---ec---c----ccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHH
Q 017726 170 ALFLVDGVSSICAID---FR---M----DEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDY 237 (367)
Q Consensus 170 ~~vi~D~~~~~~~~~---~~---~----~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (367)
++||+|++|...... .. . ......+++.|++|.++ .+| +|+++.++++++++.....
T Consensus 182 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~GlRiG~i~~~~~~~~~~~~~~~---------- 250 (364)
T PRK07865 182 AVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSN-LAGYRAGFVAGDPALVAELLEVRK---------- 250 (364)
T ss_pred CEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccC-CCceeeEEEecCHHHHHHHHHHHH----------
Confidence 999999998743221 00 0 01134699999999983 344 6999999998887764210
Q ss_pred HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCC
Q 017726 238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI 317 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 317 (367)
.. .++.+.....++..++.. ..-+++.++.+.++++.+.+.|++.|+.+..+ .++.++++.++ .
T Consensus 251 -----~~---~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~~~~~~~~~--~ 314 (364)
T PRK07865 251 -----HA---GMMVPAPVQAAMVAALGD--DAHVREQRERYARRRAVLRPALEAAGFRVDHS----EAGLYLWATRG--E 314 (364)
T ss_pred -----hc---CCCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCC----CccEEEEEeCC--C
Confidence 00 122344333333333332 11256778888999999999999988776655 45556667652 3
Q ss_pred CHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCC
Q 017726 318 NSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGH 353 (367)
Q Consensus 318 ~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~ 353 (367)
+..++.+.|. ++||.+.+|..+ ..++++||++...
T Consensus 315 ~~~~~~~~l~-~~gv~v~pg~~f~~~~~~~iRi~~~~~ 351 (364)
T PRK07865 315 DCWDTVAWLA-ERGILVAPGDFYGPAGAQHVRVALTAT 351 (364)
T ss_pred CHHHHHHHHH-HCCEEEeCccccCcCCCCEEEEEecCC
Confidence 5567888885 459999987532 2356899998654
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=201.75 Aligned_cols=267 Identities=15% Similarity=0.079 Sum_probs=187.9
Q ss_pred HHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHH
Q 017726 45 KTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLD 124 (367)
Q Consensus 45 ~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e 124 (367)
.++++.+++++|.+++++|++++|+++++..+.. ++.+|+ |++..|.|+.+. ..++..|++++.++.+. +
T Consensus 56 ~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~-~~~~g~-v~v~~P~y~~y~--~~~~~~g~~~~~v~~~~------~ 125 (339)
T PRK06959 56 DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPA-LLPRGR-VGIAPLAYSEYA--PAFARHGHRVVPLDEAA------D 125 (339)
T ss_pred HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHH-hcCCCe-EEEcCCCcHHHH--HHHHHCCCEEEeecccc------h
Confidence 7999999999999865569999999999986654 567776 888888666543 55778899998887642 2
Q ss_pred HHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHh-cCCCcEEEEeeeeccCceeec---cccccceEEEecCC
Q 017726 125 VLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDE-YRHPALFLVDGVSSICAIDFR---MDEWGIDVALTGSQ 200 (367)
Q Consensus 125 ~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~-~~~~~~vi~D~~~~~~~~~~~---~~~~~~d~~~~s~~ 200 (367)
. +. ..++++++|+||||||.+++.+++.++++. ..+++++|+|++|.......+ ......-+++.|+|
T Consensus 126 ~----~~----~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~SfS 197 (339)
T PRK06959 126 T----LP----AALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRSVG 197 (339)
T ss_pred h----cc----ccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEecCh
Confidence 2 22 245789999999999999998777766542 127899999999875432111 11112358899999
Q ss_pred CcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHH
Q 017726 201 KALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIER 277 (367)
Q Consensus 201 K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g-~~~~~~~ 277 (367)
|.++ .+| +|++++++++++++..... +++.+.....+..++++ +.. .++.+++
T Consensus 198 K~~g-l~GlRiGy~v~~~~li~~l~~~~~--------------------~~~vs~~~q~a~~~~L~---~~~~~~~~~~~ 253 (339)
T PRK06959 198 KFFG-LAGVRAGFVLAAPALLAALRDALG--------------------AWTVSGPARHAVRAAFA---DAAWQAAMRER 253 (339)
T ss_pred hhcC-CcchheEEEecCHHHHHHHHHhcC--------------------CCCCcHHHHHHHHHHhC---cHHHHHHHHHH
Confidence 9984 444 6999999999988875321 23344433334444443 222 5667888
Q ss_pred HHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHH
Q 017726 278 HRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV 357 (367)
Q Consensus 278 ~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~ 357 (367)
+.+.++++.+.|+++|+.+.+ .+.+++++.+ +..++.+.|.++ ||.++.. . ...++||++.+..++.
T Consensus 254 ~~~~r~~l~~~L~~~g~~~~~------~~~f~~~~~~---~~~~l~~~l~~~-GI~vr~~-~--~~~~lRisi~~~~~e~ 320 (339)
T PRK06959 254 LAADGARLAALLRAHGFAVHA------TPLFSWTDDP---RAAALHAALARR-GIWTRYF-A--PPPSVRFGLPADEAEW 320 (339)
T ss_pred HHHHHHHHHHHHHHCCCCccC------cceEEEEeCC---CHHHHHHHHHhC-CeEEEEC-C--CCCeEEEECCCCHHHH
Confidence 999999999999999876642 2345667663 567899999755 9999843 2 2358999965666666
Q ss_pred HHHHhhhhc
Q 017726 358 MFNFQLLFQ 366 (367)
Q Consensus 358 ~~~~~~l~~ 366 (367)
+.+.++|++
T Consensus 321 ~~l~~al~~ 329 (339)
T PRK06959 321 QRLEDALAE 329 (339)
T ss_pred HHHHHHHHH
Confidence 666666553
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-25 Score=198.15 Aligned_cols=266 Identities=15% Similarity=0.076 Sum_probs=186.1
Q ss_pred HHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHH
Q 017726 45 KTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLD 124 (367)
Q Consensus 45 ~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e 124 (367)
.++|+.|+++++.+ +|++|+|+++++.+++. +.+||+|++++|.|+.+. ..++..|++++.++.+
T Consensus 52 ~~Lr~~ia~~~~~~---~I~it~Gs~~al~~~~~--~~~gd~v~v~~P~y~~~~--~~~~~~g~~~~~v~~~-------- 116 (330)
T PRK05664 52 DGLEAAARAYYGAP---QLLPVAGSQAAIQALPR--LRAPGRVGVLSPCYAEHA--HAWRRAGHQVRELDEA-------- 116 (330)
T ss_pred HHHHHHHHHHhCCC---CEEECcCHHHHHHHHHH--ccCCCEEEEcCCChHHHH--HHHHHcCCeEEEechh--------
Confidence 68999999999853 49999999999988753 579999999999877643 5678899999988753
Q ss_pred HHHHHHhccCCCCccEEEEEecCCCccccccHHHH---HHHHHhcCCCcEEEEeeeeccCcee---eccccccceEEEec
Q 017726 125 VLASKLAADTAHTIKAICIVHNETATGVTNNLSKV---RKLLDEYRHPALFLVDGVSSICAID---FRMDEWGIDVALTG 198 (367)
Q Consensus 125 ~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i---~~~~~~~~~~~~vi~D~~~~~~~~~---~~~~~~~~d~~~~s 198 (367)
+++++++ +++++++++|+||||.+++.+++ .++|++ ++++||+|++|...... .........+++.|
T Consensus 117 ~~~~~~~-----~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~--~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~S 189 (330)
T PRK05664 117 EVEAALD-----SLDVLVVVNPNNPTGRRFDPARLLAWHARLAA--RGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRS 189 (330)
T ss_pred hHhhhhc-----CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHh--cCCEEEEECCcccCCCcccccccccCCCEEEEee
Confidence 4555553 46899999999999999986554 455566 89999999998643211 11111234588999
Q ss_pred CCCccc-CCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHH
Q 017726 199 SQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIER 277 (367)
Q Consensus 199 ~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~ 277 (367)
+||.++ ...++|++++++++++.+..... +++.+.....+...++..... .++.+++
T Consensus 190 fSK~~gl~GlRiG~~v~~~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~L~~~~~--~~~~~~~ 247 (330)
T PRK05664 190 FGKFFGLAGARLGFVLAEPALLRALAELLG--------------------PWTVSGPTRWLAQAALADTPW--QRRQRER 247 (330)
T ss_pred ccccccCCCcceEEEEeCHHHHHHHHHhcC--------------------CCCCCHHHHHHHHHHHhChHH--HHHHHHH
Confidence 999995 23347999999999888764311 122333333344444432211 4567888
Q ss_pred HHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHH
Q 017726 278 HRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV 357 (367)
Q Consensus 278 ~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~ 357 (367)
+.++++.+.+.|++.|+..... ...+++++.+ +..++.+.|. ++||.++. +. ..+++||++....++.
T Consensus 248 ~~~~r~~l~~~L~~~~~~~~~~-----~~~f~~~~~~---~~~~~~~~l~-~~gi~v~~-f~--~~~~iRis~~~~~~~~ 315 (330)
T PRK05664 248 LLAASQRLAALLRRHGLTPAGG-----CALFQWVRTE---DAAALHEFLA-RRGILTRL-FE--QPASLRFGLPADEADW 315 (330)
T ss_pred HHHHHHHHHHHHHHCCCcccCC-----cceEEEEecC---CHHHHHHHHH-HCCeEEEE-CC--CCCeEEEECCCCHHHH
Confidence 8889999999999987643221 2235556553 6788988886 45999975 32 3468999966455556
Q ss_pred HHHHhhhhc
Q 017726 358 MFNFQLLFQ 366 (367)
Q Consensus 358 ~~~~~~l~~ 366 (367)
+.+.++|++
T Consensus 316 ~~l~~al~~ 324 (330)
T PRK05664 316 ARLDQALLA 324 (330)
T ss_pred HHHHHHHHH
Confidence 666666654
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-24 Score=200.95 Aligned_cols=318 Identities=14% Similarity=0.115 Sum_probs=211.9
Q ss_pred CCCCcccccCCCCCChHHHHHHHccCCCCCC----CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC
Q 017726 6 APGKNHLFVPGPVHIPDQVIRAMNRNNEDYR----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL 81 (367)
Q Consensus 6 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~ 81 (367)
+-+|.|+-....+.+-+.+.+++.+...... .....+...++++.+++++|.+. .++.+||++|+..++..+.
T Consensus 50 ~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~---~~~~~SG~~An~~ai~~l~ 126 (406)
T PRK13393 50 WCSNDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGKEA---ALLFTSGYVSNWAALSTLG 126 (406)
T ss_pred eecccccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCCCc---EEEeCCcHHHHHHHHHHhh
Confidence 3345555555554455555555555433211 11223567899999999999632 5666777889998888654
Q ss_pred C--CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHH
Q 017726 82 S--PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKV 159 (367)
Q Consensus 82 ~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i 159 (367)
. +|+.|++....|.+.. ......|.++..++.. |++++++.++....+++++|++++++|++|.+.|+++|
T Consensus 127 ~~~~g~~I~~~~~~H~s~~--~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~~i 199 (406)
T PRK13393 127 SRLPGCVILSDELNHASMI--EGIRHSRAEKRIFRHN-----DPADLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAEI 199 (406)
T ss_pred cCCCCCEEEEccchhHHHH--HHHHHcCCeEEEeCCC-----CHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhCHHHH
Confidence 4 6776665555444432 3345567777766643 77888887764321367899999999999999999999
Q ss_pred HHHHHhcCCCcEEEEeeeeccCcee-e-----ccc--cccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCcee
Q 017726 160 RKLLDEYRHPALFLVDGVSSICAID-F-----RMD--EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF 231 (367)
Q Consensus 160 ~~~~~~~~~~~~vi~D~~~~~~~~~-~-----~~~--~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~ 231 (367)
.++|++ +|+++++|++|+.+.+. . ... ....|+++.+++|.++ ..| |++++++++++.+.....+ +.
T Consensus 200 ~~l~~~--~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g-~~G-G~~~~~~~~~~~l~~~~~~-~~ 274 (406)
T PRK13393 200 CDVAEK--HGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFG-VMG-GYITGSAALCDFIRSFASG-FI 274 (406)
T ss_pred HHHHHH--cCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhc-ccC-ceeeCCHHHHHHHHHhCcC-ce
Confidence 999999 99999999999854421 0 000 1135888899999995 555 8888999987776532111 00
Q ss_pred echHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEE
Q 017726 232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAV 311 (367)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 311 (367)
+.++.+...+++..++++.+.+.+ ..+++.+++.+++.+.|++.|+++..+ .++ ++.+
T Consensus 275 ---------------~t~~~~p~~~aa~~aaL~~~~~~~--~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~-i~~v 332 (406)
T PRK13393 275 ---------------FTTSLPPAVAAGALASVRHLKASS--AERERHQDRVARLRARLDKAGIPHLPN----PSH-IVPV 332 (406)
T ss_pred ---------------ecCccCHHHHHHHHHHHHHHhhCH--HHHHHHHHHHHHHHHHHHHcCCCcCCC----CCC-eEEE
Confidence 122355555577778888776553 234667889999999999888776643 233 4555
Q ss_pred EcCCCCCHHHHHHHHHhhCCeEEccCCCCC---CCcEEEEeecCCCCHHHHH
Q 017726 312 IVPSHINSSEIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 312 ~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~---~~~~iRi~~~~~~~~~~~~ 360 (367)
.+++..+..++.++|.+++||.+.++..+. ....+||++...++.+|+.
T Consensus 333 ~~~~~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid 384 (406)
T PRK13393 333 MVGDPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIE 384 (406)
T ss_pred EeCCHHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHH
Confidence 553323457888989876799998754332 2367999998777766544
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=205.38 Aligned_cols=293 Identities=14% Similarity=0.093 Sum_probs=195.3
Q ss_pred CCcHHHHHHHHHHHHHHHhcC-C----CCceEE--ecCChhHHHHHHHH---ccCCCCCeEEEEeCCcchHHHHHHHHHh
Q 017726 37 SPAVPALTKTLLEDIKKIFKT-T----SGTPFL--IPTTGTGAWESALT---NTLSPGDRIISFLIGQFSLLWIDQQQRL 106 (367)
Q Consensus 37 ~~~~~~~~~~~~~~la~~~~~-~----~~~~v~--~~~ggt~al~~~~~---~~~~~gd~vl~~~~~~~~~~~~~~~~~~ 106 (367)
.|....+..++|+.+++++.- . .+++|+ .|.|+++|+..++. +++++||.|++++|.|+.+. ..++..
T Consensus 67 ~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~--~~~~~~ 144 (404)
T PTZ00376 67 EYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHV--NIFKSA 144 (404)
T ss_pred CCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHH--HHHHHc
Confidence 455557778999999998632 1 334577 48899999988764 66899999999999877653 568889
Q ss_pred CCceEEEeCC--CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccC
Q 017726 107 NFNVDVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSIC 181 (367)
Q Consensus 107 g~~~~~v~~~--~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~ 181 (367)
|++++.+++. .++.+|++.+++++.+.. ++++++++++||||||.+++ +++|.++|++ |+++||+|++|...
T Consensus 145 G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~-~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~--~~~~ii~De~Y~~~ 221 (404)
T PTZ00376 145 GLNVKEYRYYDPKTKGLDFDGMLEDLRTAP-NGSVVLLHACAHNPTGVDPTEEQWKEIADVMKR--KNLIPFFDMAYQGF 221 (404)
T ss_pred CCceeeccccCcccCCcCHHHHHHHHHhCC-CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh--CCcEEEEehhhcCc
Confidence 9999999983 347899999999987532 35678888999999999997 4556777888 99999999998643
Q ss_pred ceee---------ccccc-cceEEEecCCCccc-CCCcceee---eeCHHHHHHhccCCCCceeechHHHHHHhhcCCcc
Q 017726 182 AIDF---------RMDEW-GIDVALTGSQKALS-LPTGMGIV---CASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFW 247 (367)
Q Consensus 182 ~~~~---------~~~~~-~~d~~~~s~~K~~~-g~~g~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (367)
...- ..... ...+++.|+||.++ ...++|++ +.++++++++.... .+.....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~------------~~~~~~~-- 287 (404)
T PTZ00376 222 ASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQL------------KLIIRPM-- 287 (404)
T ss_pred cCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHH------------HHHHhhh--
Confidence 3210 01111 24588999999996 23446998 46777655443110 0000010
Q ss_pred CCCCcHHHHHHHHHHHHHH---HHh--ChHHHHHHHHHHHHHHHHHHHHcCC----ccccCCCccCCCceEEEEcCCCCC
Q 017726 248 PYTPSIQLLYGLRAALDLI---FEE--GLENVIERHRRLGKATRLAVEAWGL----KNCTQKEEWFSDTVTAVIVPSHIN 318 (367)
Q Consensus 248 ~~~~~~~~~~al~~al~~~---~~~--g~~~~~~~~~~~~~~l~~~L~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~ 318 (367)
...++.....+...++..- .++ .+++.+++++++++.+.+.|++.++ .+..+ .+++++|+++
T Consensus 288 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~p----~gg~f~~~~~----- 358 (404)
T PTZ00376 288 YSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSPGDWEHIIN----QIGMFSFTGL----- 358 (404)
T ss_pred cCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccc----CceEEEecCC-----
Confidence 1123333333333334221 111 1455667889999999999998753 23334 4565666654
Q ss_pred HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHhhhh
Q 017726 319 SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQLLF 365 (367)
Q Consensus 319 ~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 365 (367)
..+++++|.+++||.+.+| + ||++.+ ..++.+.+.+.|+
T Consensus 359 ~~~~~~~L~~~~~v~v~p~-----~---Ris~~~~~~~~~~~~~~~l~ 398 (404)
T PTZ00376 359 TKEQVERLIEKYHIYLLDN-----G---RISVAGLTSKNVDYVAEAIH 398 (404)
T ss_pred CHHHHHHHHHhCCEeecCC-----C---eEEEeccCHHhHHHHHHHHH
Confidence 2588999998889999887 1 998742 4445555555544
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-25 Score=199.38 Aligned_cols=296 Identities=16% Similarity=0.134 Sum_probs=205.8
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC-CC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GE 119 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~ 119 (367)
....++++.+++++|.+ .+++++|||+|+..++.++ +.+||+|+++.+.|++.. ..+...|++++.++.+. ++
T Consensus 18 ~~~~~~~~~la~~~~~~---~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~ 92 (352)
T cd00616 18 PKVREFEKAFAEYLGVK---YAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATA--NAILLLGATPVFVDIDPDTY 92 (352)
T ss_pred HHHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHH--HHHHHcCCeEEEEecCCCcC
Confidence 56789999999999963 3778889999999999887 689999999999888754 44667899999999886 67
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeecc-ccccceEEEec
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRM-DEWGIDVALTG 198 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~-~~~~~d~~~~s 198 (367)
.+|+++++++++ +++++|++++ ++|...|+++|.++|++ +|+++++|++|+.+...... .....|+.++|
T Consensus 93 ~~d~~~l~~~i~----~~~~~v~~~~---~~G~~~~~~~i~~l~~~--~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S 163 (352)
T cd00616 93 NIDPELIEAAIT----PRTKAIIPVH---LYGNPADMDAIMAIAKR--HGLPVIEDAAQALGATYKGRKVGTFGDAGAFS 163 (352)
T ss_pred CcCHHHHHHhcC----cCCeEEEEEC---CCCCcCCHHHHHHHHHH--cCCeEEEECCCCCCCeECCEEcccCcceeEEc
Confidence 889999999986 4679998775 69999999999999999 99999999999987654221 01124777777
Q ss_pred CC--CcccCCCcceeeeeC-HHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHH
Q 017726 199 SQ--KALSLPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275 (367)
Q Consensus 199 ~~--K~~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~ 275 (367)
++ |+++++.| |+++.+ +++.+++............. +++... ..++. .+..+.+++......+++++.
T Consensus 164 ~~~~K~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~---~~~~~~aa~~~~~l~~~~~~~ 234 (352)
T cd00616 164 FHPTKNLTTGEG-GAVVTNDEELAERARLLRNHGRDRDRF----KYEHEI-LGYNY---RLSEIQAAIGLAQLEKLDEII 234 (352)
T ss_pred CCCCCCCcccCc-eEEEECCHHHHHHHHHHHHcCCCCCCC----ccccce-eeecc---CcCHHHHHHHHHHHHhhHHHH
Confidence 54 99965554 666665 57766665322111000000 000000 00001 111233344444444577888
Q ss_pred HHHHHHHHHHHHHHHHc-CCccccCCCc-cCCCceEEEEcCC--CCCHHHHHHHHHhhCCeEEccCCCCC----------
Q 017726 276 ERHRRLGKATRLAVEAW-GLKNCTQKEE-WFSDTVTAVIVPS--HINSSEIVRRAWQRYNLSLGLGLNKV---------- 341 (367)
Q Consensus 276 ~~~~~~~~~l~~~L~~~-g~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~l~~~L~~~~gv~v~~g~~~~---------- 341 (367)
++.+++++++.+.|++. |+++..+.+. .....++.|.++. +.+..++.+.|.++ ||.+...+.+.
T Consensus 235 ~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~-gI~~~~~~~~~~~~~~~~~~~ 313 (352)
T cd00616 235 ARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEA-GIETRVHYPPLHHQPPYKKLL 313 (352)
T ss_pred HHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHC-CCCeeeecCccccCHhhhhcc
Confidence 88999999999999997 8887764321 2345577788754 56888999999655 99776433221
Q ss_pred -------C------CcEEEEeecCCCCHHHHHH
Q 017726 342 -------A------GKVFRIGHLGHLNEVMFNF 361 (367)
Q Consensus 342 -------~------~~~iRi~~~~~~~~~~~~~ 361 (367)
+ ...+|++++.+.+++|+..
T Consensus 314 ~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~ 346 (352)
T cd00616 314 GYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDR 346 (352)
T ss_pred CCCcCCChHHHHHHhCeEEccCCCCCCHHHHHH
Confidence 0 1469999888877766543
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-24 Score=198.26 Aligned_cols=312 Identities=16% Similarity=0.102 Sum_probs=221.8
Q ss_pred CcccccCCCCCChHHHHHHHccCCCC--------CCCC---c-HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNED--------YRSP---A-VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESA 76 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~--------~~~~---~-~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~ 76 (367)
+.+.++|+-.-+++.+++++.....+ .++| . ...+..-+.++..++||++..+ +=.-||+.|+..+
T Consensus 50 ~~l~LiasEN~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~an--vqp~Sg~~An~~v 127 (493)
T PRK13580 50 SSLKLIASENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEHAY--VQPHSGADANLVA 127 (493)
T ss_pred cCceEecccccCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCCccc--ccCCCcHHHHHHH
Confidence 56778888889999999998874332 1222 2 3455556788889999988754 4556789999999
Q ss_pred HHccCCC-------------------------------CCeEEEEeCCcchHH---HHHHHHHhCCceEEEeCC-CCCCC
Q 017726 77 LTNTLSP-------------------------------GDRIISFLIGQFSLL---WIDQQQRLNFNVDVVESD-WGEGA 121 (367)
Q Consensus 77 ~~~~~~~-------------------------------gd~vl~~~~~~~~~~---~~~~~~~~g~~~~~v~~~-~~~~~ 121 (367)
+.+++.| ||+|+..+..+.++. +..-......+.+..+++ .++.+
T Consensus 128 ~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~i 207 (493)
T PRK13580 128 FWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLL 207 (493)
T ss_pred HHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCcccCcc
Confidence 9998876 799998877554432 110011112444555555 35789
Q ss_pred CHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccc------cccceEE
Q 017726 122 KLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMD------EWGIDVA 195 (367)
Q Consensus 122 d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~------~~~~d~~ 195 (367)
|++++++.+++ +++.|++++.+|. |...|+++|.++|++ +|+++++|++|++|.+..+.. ..++|++
T Consensus 208 D~d~l~~~~~~----~~plvii~g~S~~-~~~~dl~~i~eia~~--~gA~L~VD~AH~~Gligg~~~~~~~~~~~~~D~v 280 (493)
T PRK13580 208 DYDEIAALARE----FKPLILVAGYSAY-PRRVNFAKLREIADE--VGAVLMVDMAHFAGLVAGKVFTGDEDPVPHADIV 280 (493)
T ss_pred CHHHHHHHHhh----cCCEEEEeCcccc-CCCcCHHHHHHHHHH--cCCEEEEECchhhceeccccchhhcCCCCCCcEE
Confidence 99999999985 5578888888888 557799999999999 999999999999988764431 1268999
Q ss_pred EecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHH
Q 017726 196 LTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275 (367)
Q Consensus 196 ~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~ 275 (367)
++|+||++.||.| |++++++++++.+.... ++.+ + ++....+++...++..+.+.+.++.+
T Consensus 281 tgT~hKaL~GP~G-G~I~~~~~l~~~L~~a~--P~i~-----------g-----g~l~p~iAA~avAl~e~~~~ef~~y~ 341 (493)
T PRK13580 281 TTTTHKTLRGPRG-GLVLAKKEYADAVDKGC--PLVL-----------G-----GPLPHVMAAKAVALAEARTPEFQKYA 341 (493)
T ss_pred EeCChhhccCCCe-EEEEecHHHHHHHhhCC--Cccc-----------C-----CCccHHHHHHHHHHHHHhCccHHHHH
Confidence 9999999988887 99999999988874221 1111 2 24444556777777777655456788
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCC-CCHHHHHHHHHhhCCeEEccCCCCC------CCcEEEE
Q 017726 276 ERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH-INSSEIVRRAWQRYNLSLGLGLNKV------AGKVFRI 348 (367)
Q Consensus 276 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~L~~~~gv~v~~g~~~~------~~~~iRi 348 (367)
++..+|+++|++.|.+.|+.+.... ..++++.+.+.+. .....+.+.|. +.||.+.....|. ....|||
T Consensus 342 ~~l~~Na~~La~~L~~~G~~vv~gg---TdshIV~V~lg~~~~~g~~a~~~L~-e~GI~vn~i~~Ptvp~g~~~~srLRI 417 (493)
T PRK13580 342 QQVVDNARALAEGFLKRGARLVTGG---TDNHLVLIDVTSFGLTGRQAESALL-DAGIVTNRNSIPSDPNGAWYTSGIRL 417 (493)
T ss_pred HHHHHHHHHHHHHHHhcCCCccCCC---CCCCEEEEEeCCHHHHHHHHHHHHH-HCCeEEccccCCCCCCCCCCCceEEe
Confidence 9999999999999999999887432 1345777877432 22335556775 5599997543221 2566999
Q ss_pred eecC
Q 017726 349 GHLG 352 (367)
Q Consensus 349 ~~~~ 352 (367)
|+..
T Consensus 418 g~~A 421 (493)
T PRK13580 418 GTPA 421 (493)
T ss_pred ccch
Confidence 9766
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-25 Score=198.91 Aligned_cols=294 Identities=13% Similarity=0.067 Sum_probs=190.0
Q ss_pred ChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHH
Q 017726 20 IPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLW 99 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~ 99 (367)
+++.+++++.+.......|.......++++.+++++|.++ +++++||++++..++.+++.+||+|+++.+.|.....
T Consensus 12 p~~~~~~a~~~~~~~~~~Y~~~~~~~~L~~~la~~~g~~~---~~v~~~g~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~ 88 (333)
T PRK10534 12 PSRAMLEAMMAAPVGDDVYGDDPTVNALQDYAAELSGKEA---ALFLPTGTQANLVALLSHCERGEEYIVGQAAHNYLYE 88 (333)
T ss_pred CCHHHHHHHHhccCCCcccCCCHHHHHHHHHHHHHhCCCe---EEEeCchHHHHHHHHHHhcCCCCeeEEechhhhhHhc
Confidence 5567888887754444334344778899999999999866 3577888888888887888999999988775533221
Q ss_pred HHHHHHh-CCceEEEeCCCCCCCCHHHHHHHHhccCC--CCccEEEEEecCCCccccccHHHH---HHHHHhcCCCcEEE
Q 017726 100 IDQQQRL-NFNVDVVESDWGEGAKLDVLASKLAADTA--HTIKAICIVHNETATGVTNNLSKV---RKLLDEYRHPALFL 173 (367)
Q Consensus 100 ~~~~~~~-g~~~~~v~~~~~~~~d~e~l~~~i~~~~~--~~~~lv~~~~~~n~tG~~~~~~~i---~~~~~~~~~~~~vi 173 (367)
...+... +++++.++.+.++.+|++++++++.++.. .++++|++|+|+ +|.+.|.++| .++|++ ++++++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~~~l~~i~~~~~~--~~~~lv 164 (333)
T PRK10534 89 AGGAAVLGSIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPREYLKQAWEFTRE--RNLALH 164 (333)
T ss_pred CCchHHhcCceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecCHHHHHHHHHHHHH--cCCeEE
Confidence 1112233 36778888777788999999999864200 157999999765 5999986655 567777 899999
Q ss_pred EeeeeccCce---eeccc--cccceEEEecCCCcccCCCcce-eeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCcc
Q 017726 174 VDGVSSICAI---DFRMD--EWGIDVALTGSQKALSLPTGMG-IVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFW 247 (367)
Q Consensus 174 ~D~~~~~~~~---~~~~~--~~~~d~~~~s~~K~~~g~~g~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (367)
+|++|.+... ..... ....|.++.|+||.++.+ +| ++++++++++.+..... ..+.
T Consensus 165 vDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~--~G~~~~~~~~~i~~~~~~~~--------------~~~~-- 226 (333)
T PRK10534 165 VDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTP--VGSLLVGNRDYIKRARRWRK--------------MTGG-- 226 (333)
T ss_pred eeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCc--ccceEEcCHHHHHHHHHHHH--------------HhCC--
Confidence 9998765321 11110 112465566899988644 45 68889999887764211 0010
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHH
Q 017726 248 PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAW 327 (367)
Q Consensus 248 ~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 327 (367)
..+... .++.+++..+.+. .+..++..++++++.+.|+++|+++..+ . .+++++++++ .+..++.+.|.
T Consensus 227 --~~~~~~-~~~a~~~~~l~~~--~~~~~~~~~~r~~l~~~L~~~g~~~~~~----~-~nfv~~~~~~-~~~~~~~~~l~ 295 (333)
T PRK10534 227 --GMRQAG-ILAAAGLYALKHN--VARLQEDHDNAAWLAEQLREAGADVMRQ----D-TNMLFVRVGE-EQAAALGEYMR 295 (333)
T ss_pred --chhhHH-HHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHhCCCccCCC----C-ceEEEEECCc-hhHHHHHHHHH
Confidence 011111 1222233333221 2333445567889999999999887665 3 4477788742 34668888776
Q ss_pred hhCCeEEccCCCCCCCcEEEEeecCCCCH
Q 017726 328 QRYNLSLGLGLNKVAGKVFRIGHLGHLNE 356 (367)
Q Consensus 328 ~~~gv~v~~g~~~~~~~~iRi~~~~~~~~ 356 (367)
+ .||.++++. ++|++.....+.
T Consensus 296 ~-~gi~v~~~~------~~rl~~~~r~t~ 317 (333)
T PRK10534 296 E-RNVLINASP------IVRLVTHLDVSR 317 (333)
T ss_pred H-cCeeecCCc------eEEEEEEeCCCH
Confidence 5 499998752 478876534443
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=207.92 Aligned_cols=294 Identities=12% Similarity=0.022 Sum_probs=185.3
Q ss_pred CcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCC-----CCCeEEE-EeCCcchHHHHHHHHHh
Q 017726 38 PAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLS-----PGDRIIS-FLIGQFSLLWIDQQQRL 106 (367)
Q Consensus 38 ~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~-----~gd~vl~-~~~~~~~~~~~~~~~~~ 106 (367)
|.......++|+.|++++ |.. ++++|++|+|+++++.+++.+++. +||.|++ ..|.|+.+.. .++..
T Consensus 70 Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~--~~~~~ 147 (416)
T PRK09440 70 YDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYAD--AGLEE 147 (416)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHH--Hhhcc
Confidence 333344567888888877 432 335699999999999999988874 6899999 6888777542 22212
Q ss_pred C----CceEEEeCCC---CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCCCcEEEEee
Q 017726 107 N----FNVDVVESDW---GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDG 176 (367)
Q Consensus 107 g----~~~~~v~~~~---~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~ 176 (367)
+ .....++.+. .+.+|+++++ +. ++++++++++||||||.+++ +++|.++|++ ++++||+|+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~----~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~--~~~~iI~De 219 (416)
T PRK09440 148 DLFVSYRPNIELLPEGQFKYHVDFEHLH--ID----EDTGAICVSRPTNPTGNVLTDEELEKLDALARQ--HNIPLLIDN 219 (416)
T ss_pred CceeecccccccccccccccCCCHHHcc--cC----CCceEEEEecCCCCCCccCCHHHHHHHHHHHHH--cCCcEEEeC
Confidence 2 2222233332 2568888887 23 46799999999999999998 5567778888 999999999
Q ss_pred eeccCceee---ccc--cccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCC
Q 017726 177 VSSICAIDF---RMD--EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTP 251 (367)
Q Consensus 177 ~~~~~~~~~---~~~--~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (367)
+|....... +.. ..+..+++.|+||+.....++|++++++++++++...... ...++
T Consensus 220 ~Y~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~pGlRiG~~i~~~~l~~~~~~~~~~------------------~~~~~ 281 (416)
T PRK09440 220 AYGPPFPGIIFSEATPLWNPNIILCMSLSKLGLPGVRCGIVIADEEIIEALSNMNGI------------------ISLAP 281 (416)
T ss_pred CccccCCCcchhhcCccccCCeEEEecccccCCCcceEEEEeCCHHHHHHHHHHHHH------------------hccCC
Confidence 996321111 110 1235688899999632223369999999988877643110 01123
Q ss_pred cHHHHHHHHHHHHHHHHhC-hHH-HHHHHHHHHHHHHHHHHHc--C--CccccCCCccCCCceEEEEcCC-CCCHHHHHH
Q 017726 252 SIQLLYGLRAALDLIFEEG-LEN-VIERHRRLGKATRLAVEAW--G--LKNCTQKEEWFSDTVTAVIVPS-HINSSEIVR 324 (367)
Q Consensus 252 ~~~~~~al~~al~~~~~~g-~~~-~~~~~~~~~~~l~~~L~~~--g--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 324 (367)
+.....++..++..-.-.. ..+ +++.++++++.+.+.|++. + +.+..+ .++.++|+++++ +.+..++.+
T Consensus 282 s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p----~gg~fiw~~~~~~~~~~~~~~~ 357 (416)
T PRK09440 282 GRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKP----EGAIFLWLWFKDLPITTEELYQ 357 (416)
T ss_pred CcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEecC----CCceEEEEECCCCCCCHHHHHH
Confidence 4433333333332111000 122 4556677778888888764 3 344444 456788888865 467788999
Q ss_pred HHHhhCCeEEccCCCCCC---------CcEEEEeecCCCCHHHHHHhhh
Q 017726 325 RAWQRYNLSLGLGLNKVA---------GKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 325 ~L~~~~gv~v~~g~~~~~---------~~~iRi~~~~~~~~~~~~~~~l 364 (367)
.|. ++||.+.+|..+.. .+++||++....++.+...+.|
T Consensus 358 ~l~-~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~~~~~l~~~i~~l 405 (416)
T PRK09440 358 RLK-ARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQDDEEIEKGIAIL 405 (416)
T ss_pred HHH-HCCEEEechHhhCCCCccccCCcCceEEEEecCCHHHHHHHHHHH
Confidence 885 56999999843211 2479999865444433333333
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-25 Score=201.57 Aligned_cols=293 Identities=15% Similarity=0.155 Sum_probs=206.6
Q ss_pred ChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeEEEEeCCcchH
Q 017726 20 IPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSL 97 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl~~~~~~~~~ 97 (367)
..++-.+++.+.... ...++ ....++++.+++++|.+. +++++|||+|+.+++.++ +.+||+|+++.+.|++.
T Consensus 12 ~~~~e~~~~~~~l~~~~~~~g--~~~~~le~~la~~~g~~~---~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~ 86 (379)
T PRK11658 12 MGDEELAAVKEVLRSGWITTG--PKNQALEQAFCQLTGNQH---AIAVSSATAGMHITLMALGIGPGDEVITPSLTWVST 86 (379)
T ss_pred CCHHHHHHHHHHHHcCCccCC--HhHHHHHHHHHHHhCCCe---EEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHH
Confidence 344446666553322 22233 567899999999999863 677899999999999988 79999999999987775
Q ss_pred HHHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEee
Q 017726 98 LWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDG 176 (367)
Q Consensus 98 ~~~~~~~~~g~~~~~v~~~~~-~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~ 176 (367)
. ..+...|++++.++.+.+ +.+|+++++++++ +++|+|+. .|++|...|+++|.++|++ +|+++++|+
T Consensus 87 ~--~~~~~~G~~~v~vd~~~~~~~~d~~~l~~~i~----~~tkav~~---~~~~G~~~d~~~i~~~a~~--~gi~vi~D~ 155 (379)
T PRK11658 87 L--NMIVLLGATPVMVDVDRDTLMVTPEAIEAAIT----PRTKAIIP---VHYAGAPADLDAIRAIGER--YGIPVIEDA 155 (379)
T ss_pred H--HHHHHcCCEEEEEecCCCcCCcCHHHHHHhcc----cCCeEEEE---eCCCCCcCCHHHHHHHHHH--cCCeEEEEC
Confidence 3 446778999999998754 4689999999997 46788874 4569999999999999999 999999999
Q ss_pred eeccCceee--ccccccceEEEecCCCcccCCCcceeeee-CHHHHHHhccCCCCceeechHHHH--------HHhhcCC
Q 017726 177 VSSICAIDF--RMDEWGIDVALTGSQKALSLPTGMGIVCA-SPKALEASKTAKSVRVFFDWKDYI--------KFYNLGT 245 (367)
Q Consensus 177 ~~~~~~~~~--~~~~~~~d~~~~s~~K~~~g~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 245 (367)
+|+++.... .....+.++++++.+|.+.++.| |+++. ++++.+++......+...+..... ..++.|.
T Consensus 156 a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~G-G~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~ 234 (379)
T PRK11658 156 AHAVGTYYKGRHIGARGTAIFSFHAIKNITCAEG-GLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGY 234 (379)
T ss_pred CCccCCeECCeecCCCCCEEEeCCCCCcCcccCc-eEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeecccc
Confidence 999876542 23445668888889999977665 66665 578777776533222221110000 0011121
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCc-cccCCC-ccCCCceEEEEcCC---CCCHH
Q 017726 246 FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLK-NCTQKE-EWFSDTVTAVIVPS---HINSS 320 (367)
Q Consensus 246 ~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~-~~~~~~-~~~~~~~~~~~~~~---~~~~~ 320 (367)
... +..+.+|+...+..+++++.++.+++++.+.+.|++.++. +..+.. ....+.++.++++. +.+.+
T Consensus 235 ----n~~---~~~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 307 (379)
T PRK11658 235 ----KYN---LADINAAIALVQLAKLEALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDEERCGISRD 307 (379)
T ss_pred ----ccC---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECCccccCCHH
Confidence 112 2467888888888889999999999999999999887432 322221 12233455666632 35678
Q ss_pred HHHHHHHhhCCeEEccC
Q 017726 321 EIVRRAWQRYNLSLGLG 337 (367)
Q Consensus 321 ~l~~~L~~~~gv~v~~g 337 (367)
++.+.|.++ ||.++..
T Consensus 308 ~~~~~L~~~-gI~~~~~ 323 (379)
T PRK11658 308 ALMEALKER-GIGTGLH 323 (379)
T ss_pred HHHHHHHHC-CCCCccc
Confidence 999999754 9887643
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-25 Score=206.44 Aligned_cols=275 Identities=16% Similarity=0.078 Sum_probs=177.1
Q ss_pred eEEecCChhHHHHHHHHc-----cCCCCCeEEEEeCCcchHHHHHHHHH--hCCceEEEeCCC--C-----CCCCHHHHH
Q 017726 62 PFLIPTTGTGAWESALTN-----TLSPGDRIISFLIGQFSLLWIDQQQR--LNFNVDVVESDW--G-----EGAKLDVLA 127 (367)
Q Consensus 62 ~v~~~~ggt~al~~~~~~-----~~~~gd~vl~~~~~~~~~~~~~~~~~--~g~~~~~v~~~~--~-----~~~d~e~l~ 127 (367)
+|++|+|+++|+..++.+ ++.|||+|+++.|.|+.+. ..++. .|++++.++.+. + +.+|.++++
T Consensus 157 ~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~--~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~ 234 (521)
T TIGR03801 157 DLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYL--EIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELE 234 (521)
T ss_pred eEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHH--HHHHHhcCCcEEEEeecccccccccccCCCCHHHHH
Confidence 699999999999998876 7899999999999777654 33343 467777777653 2 778999999
Q ss_pred HHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccCcee-eccc--cccceEEEecCCC
Q 017726 128 SKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAID-FRMD--EWGIDVALTGSQK 201 (367)
Q Consensus 128 ~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-~~~~--~~~~d~~~~s~~K 201 (367)
++++ +++|+|++++|+||||.+++ +++|.++|++++++++||+|++|+..... .+.. .....+++.|+||
T Consensus 235 ~~~~----~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK 310 (521)
T TIGR03801 235 KLRD----PSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSK 310 (521)
T ss_pred HhcC----CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchh
Confidence 8776 57899999999999999998 56677778873349999999998743321 1111 1135689999999
Q ss_pred cccCCCc--ceeeeeCHH-----HHHHh--------ccCCCCceee--------c-hHHHHHHhhcCCccCCCCcHHHH-
Q 017726 202 ALSLPTG--MGIVCASPK-----ALEAS--------KTAKSVRVFF--------D-WKDYIKFYNLGTFWPYTPSIQLL- 256 (367)
Q Consensus 202 ~~~g~~g--~g~~~~~~~-----~~~~~--------~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~- 256 (367)
.++ .+| +|+++++++ +++.+ ... ...... | ............ +.+.+...+.
T Consensus 311 ~fg-~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~r-y~~~~~~p~~~~fidr~vadsr~v~~~~-~~g~s~p~Q~q 387 (521)
T TIGR03801 311 YFG-ATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKR-YSSLTTEPRKLKFIDRLVADSRQVALNH-TAGLSTPQQVQ 387 (521)
T ss_pred hcc-CchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhh-hccccCChhhhhhHHHHHHHHHHHHHhc-cCCCCcHHHHH
Confidence 984 444 699999865 33222 110 000000 1 000001111111 1111222221
Q ss_pred HHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHcCCcc--ccCCCccCCCceEEEEcCC-C---------------
Q 017726 257 YGLRAALDLIFEE--GLENVIERHRRLGKATRLAVEAWGLKN--CTQKEEWFSDTVTAVIVPS-H--------------- 316 (367)
Q Consensus 257 ~al~~al~~~~~~--g~~~~~~~~~~~~~~l~~~L~~~g~~~--~~~~~~~~~~~~~~~~~~~-~--------------- 316 (367)
.++.++...+... -.++.++.++++++.+.+.| |+.+ ..+ .+.++++++++. .
T Consensus 388 ~al~a~~all~~~~~y~~~~~~~~~~R~~~l~~~L---g~~~~~~~~----~g~~Y~~~di~~~~~~~~~~~f~~~l~~~ 460 (521)
T TIGR03801 388 MALFSLFALMDKENAYKAETKDICRRREKLLFRGL---GLPLQEDPN----DVAYYTLIDLEEWAEKNYGEEFSSYLKKN 460 (521)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhc---CCCCcCCCC----CeEEEEEeehHHHHHHhcchHHHHHHhcc
Confidence 1322233333221 15667777888888887777 5543 223 466778888752 1
Q ss_pred CCHHHHHHHHHhhCCeEEccCCCCCC-CcEEEEeecC
Q 017726 317 INSSEIVRRAWQRYNLSLGLGLNKVA-GKVFRIGHLG 352 (367)
Q Consensus 317 ~~~~~l~~~L~~~~gv~v~~g~~~~~-~~~iRi~~~~ 352 (367)
.+..+++.+|.+++||.+.||..+.. ..++|||+.+
T Consensus 461 ~~~~~~~~~L~~e~gV~v~PG~~Fg~~~~~vRisla~ 497 (521)
T TIGR03801 461 YSPVDVLFRLAEETGIVLLPGGGFGGPEWSVRVSLAN 497 (521)
T ss_pred CCHHHHHHHHHHhCCEEEeCchhcCCCCCeEEEEecC
Confidence 15678999999999999999965433 4569999864
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-24 Score=194.42 Aligned_cols=283 Identities=12% Similarity=0.112 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 119 (367)
....++++.++++.+.. .+++++||++|+..++.+++++||+|+++++.|.+.. +.......|+++..++..
T Consensus 61 pt~~~Le~~iA~le~~~---~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~--- 134 (394)
T PRK09028 61 PTHFAFQAAIVELEGGA---GTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPM--- 134 (394)
T ss_pred chHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCC---
Confidence 34668999999998754 3788899999999999999999999999999886654 223456678888877643
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecC
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS 199 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~ 199 (367)
+.+.++++++ +++|+|++++|+||+|.+.|+++|.++||+ +|+++++|++++.+. .......|+|+++.|.
T Consensus 135 --~~e~l~~~l~----~~TklV~lespsNPtg~v~dl~~I~~la~~--~g~~lvvD~t~a~p~-~~~Pl~~GaDivv~S~ 205 (394)
T PRK09028 135 --IGEGIRELIR----PNTKVLFLESPGSITMEVQDVPTLSRIAHE--HDIVVMLDNTWASPI-NSRPFEMGVDISIQAA 205 (394)
T ss_pred --CHHHHHHhcC----cCceEEEEECCCCCCCcHHHHHHHHHHHHH--cCCEEEEECCccccc-cCCccccCceEEEEeC
Confidence 4678888887 577999999999999999999999999999 999999999998764 3444467899999999
Q ss_pred CCcccCCCcc--eeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHH
Q 017726 200 QKALSLPTGM--GIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIER 277 (367)
Q Consensus 200 ~K~~~g~~g~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~ 277 (367)
+||++|+..+ |+++.++++.+++.... . ..|. +++....+.+...++. +.-++++
T Consensus 206 tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~-------------~-~~G~----~~~p~~a~l~~rgl~T-----L~lR~~~ 262 (394)
T PRK09028 206 TKYIVGHSDVMLGTATANEKHWDQLREHS-------------Y-LMGQ----CTSPDDVYLAMRGLRT-----LGVRLAQ 262 (394)
T ss_pred CeEecCCCCEEEEEEECCHHHHHHHHHHH-------------H-hcCC----CCCHHHHHHHHcccCc-----HHHHHHH
Confidence 9999987553 76777777655544210 0 1132 2333222222222222 6678889
Q ss_pred HHHHHHHHHHHHHHc-CC-ccccCC----Cc--------cCCCceEEEEcCCC-C-CHHHHHHHHHhhCCeEEccC-CC-
Q 017726 278 HRRLGKATRLAVEAW-GL-KNCTQK----EE--------WFSDTVTAVIVPSH-I-NSSEIVRRAWQRYNLSLGLG-LN- 339 (367)
Q Consensus 278 ~~~~~~~l~~~L~~~-g~-~~~~~~----~~--------~~~~~~~~~~~~~~-~-~~~~l~~~L~~~~gv~v~~g-~~- 339 (367)
..+++..+.+.|++. .+ .+.-|. +. ...+.+++|.+..+ . ....|++.|+ -..+.+.-| ..
T Consensus 263 ~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~f~~~l~-l~~~~~slG~~~s 341 (394)
T PRK09028 263 HEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKAVTALVEGMQ-HFKMGFSWGGFES 341 (394)
T ss_pred HHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCC-cceEecccCCCcc
Confidence 999999999999987 43 232221 10 12356899998422 1 1234444442 222222222 10
Q ss_pred ----C-------------CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 340 ----K-------------VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 340 ----~-------------~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
+ ..++.||+| .|-++.+|+..++.
T Consensus 342 Lv~~p~~~~~~~~~~~~~~~~~liR~s-vGlEd~~dLi~Dl~ 382 (394)
T PRK09028 342 LILGVFGINKLRTATNWDFSKPLIRLH-IGLEDVDDLIADLE 382 (394)
T ss_pred eeECCCCcCccCchhhhcCCCCeEEEE-eCcCCHHHHHHHHH
Confidence 1 123469998 57777777776653
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-25 Score=201.91 Aligned_cols=307 Identities=12% Similarity=0.043 Sum_probs=200.6
Q ss_pred HHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhcCC-----CCceE--EecCChhHHHHHHHHcc--CCCCCeEEEE
Q 017726 22 DQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTT-----SGTPF--LIPTTGTGAWESALTNT--LSPGDRIISF 90 (367)
Q Consensus 22 ~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~-----~~~~v--~~~~ggt~al~~~~~~~--~~~gd~vl~~ 90 (367)
+.+.+++.+.... ...|....+..++|+.+++++... .++++ ++|+|+++|+.++++.+ ++|||+|+++
T Consensus 47 ~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~ 126 (396)
T PRK09257 47 RAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVS 126 (396)
T ss_pred HHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEEC
Confidence 6778887775432 224555567789999999987321 23445 89999999999988654 5899999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeC--CCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHh
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVES--DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE 165 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~ 165 (367)
+|.|+.+. ..++..|++++.+++ +.++.+|++.+++++++.. ++++++++++||||||.+++ +++|.++|++
T Consensus 127 ~P~y~~~~--~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~-~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~ 203 (396)
T PRK09257 127 DPTWPNHR--AIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAP-AGDVVLLHGCCHNPTGADLTPEQWDELAELLKE 203 (396)
T ss_pred CCCcccHH--HHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCC-CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 99887753 567889999999997 2356899999999987532 34567777999999999997 5567788888
Q ss_pred cCCCcEEEEeeeeccCceee-----c---cc-cccceEEEecCCCcccCCCc--ceeeee---CHHHHHHhccCCCCcee
Q 017726 166 YRHPALFLVDGVSSICAIDF-----R---MD-EWGIDVALTGSQKALSLPTG--MGIVCA---SPKALEASKTAKSVRVF 231 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~~-----~---~~-~~~~d~~~~s~~K~~~g~~g--~g~~~~---~~~~~~~~~~~~~~~~~ 231 (367)
++++||+|++|....... . +. .....+++.|+||.++ ++| +|++++ +++.+.++.....
T Consensus 204 --~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~-~~GlRiG~~~~~~~~~~~~~~~~~~~~---- 276 (396)
T PRK09257 204 --RGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFG-LYGERVGALSVVAEDAEEADRVLSQLK---- 276 (396)
T ss_pred --CCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCc-cccccceeEEEEeCCHHHHHHHHHHHH----
Confidence 999999999987543210 0 11 1124688999999995 444 698873 4443333321000
Q ss_pred echHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH-----HhChHHHHHHHHHHHHHHHHHHHHcC----CccccCCCc
Q 017726 232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-----EEGLENVIERHRRLGKATRLAVEAWG----LKNCTQKEE 302 (367)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~-----~~g~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~ 302 (367)
.... .. .+.++.....++..++..-. +.-+++.+++++++++.+.+.|++.+ +.+..+
T Consensus 277 -------~~~~-~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~~~~~~~~~~~p--- 343 (396)
T PRK09257 277 -------ATIR-TN--YSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAKGPSRDFDFIAR--- 343 (396)
T ss_pred -------HHhh-hh--cCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc---
Confidence 0000 00 11233333233333332210 11266788899999999999999974 444444
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHhhhh
Q 017726 303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQLLF 365 (367)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 365 (367)
.+++++|+++ + .++++.|.+++||.+.+. + ||++.+ ..+..+...+.|.
T Consensus 344 -~gg~~~w~~l----~-~~~~~~l~~~~~V~~~p~------~--ri~~~~~~~~~i~~~~~~i~ 393 (396)
T PRK09257 344 -QRGMFSYSGL----T-PEQVDRLREEFGVYAVGS------G--RINVAGLNESNIDYVAEAIA 393 (396)
T ss_pred -cceEEEecCC----C-HHHHHHHHHcCCEEEcCC------C--eEEEeeCCHHHHHHHHHHHH
Confidence 4666666665 2 356666777889988762 1 999754 3333444444443
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-24 Score=198.76 Aligned_cols=324 Identities=17% Similarity=0.160 Sum_probs=221.5
Q ss_pred CcccccCCCCCChHHHHHHHccCCCC--------CC---CCcHHHH-HHHHHHHHHHHhcCCCCceEEe---cCChhHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNED--------YR---SPAVPAL-TKTLLEDIKKIFKTTSGTPFLI---PTTGTGAW 73 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~--------~~---~~~~~~~-~~~~~~~la~~~~~~~~~~v~~---~~ggt~al 73 (367)
+.+.++|+-..+++.+++++.....+ .+ +..+.+. ..-++++..+.++..... +.+ ..||+.|+
T Consensus 35 ~~l~liasen~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~-~~~nv~~~SG~~AN 113 (475)
T PLN03226 35 KGLELIASENFTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEK-WGVNVQPLSGSPAN 113 (475)
T ss_pred cCeeEecCCccCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcce-eEEecCcCchHHHH
Confidence 55678888888999999988875411 11 1222222 333455677888887644 322 37889999
Q ss_pred HHHHHccCCCCCeEEEEeC---CcchHHHHH-HHHHhCC--ceEEEe--CC-CCCCCCHHHHHHHHhccCCCCccEEEEE
Q 017726 74 ESALTNTLSPGDRIISFLI---GQFSLLWID-QQQRLNF--NVDVVE--SD-WGEGAKLDVLASKLAADTAHTIKAICIV 144 (367)
Q Consensus 74 ~~~~~~~~~~gd~vl~~~~---~~~~~~~~~-~~~~~g~--~~~~v~--~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~ 144 (367)
..++.++++|||+|+..+. +|.++.+.. ..+..+. .+..++ .+ +++.+|++++++++.+ .++++|++.
T Consensus 114 ~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~---~~pklIv~~ 190 (475)
T PLN03226 114 FAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAML---FRPKLIIAG 190 (475)
T ss_pred HHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhh---cCCeEEEEe
Confidence 9999999999999998543 444432211 1111111 112222 23 4578999999999875 356776553
Q ss_pred ecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeecccc---ccceEEEecCCCcccCCCcceeeeeCHHHHHH
Q 017726 145 HNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDE---WGIDVALTGSQKALSLPTGMGIVCASPKALEA 221 (367)
Q Consensus 145 ~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~---~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~ 221 (367)
.+.+|...|+++|.++|++ +|+++++|++|+.|....+... .++|++++++||||.||.| |+++++++.++.
T Consensus 191 --~S~~s~~~D~a~i~~ia~~--~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~~t~hK~L~GP~G-g~I~~~~~~~~~ 265 (475)
T PLN03226 191 --ASAYPRDWDYARMRKIADK--VGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGPRG-GMIFFRKGPKPP 265 (475)
T ss_pred --cCcCCCccCHHHHHHHHHH--cCCEEEEEchhhhCcccCCCCCCCCCCCeEEEecCcccccCCCc-eEEEEchhhccc
Confidence 2347888899999999999 9999999999998876544321 2689999999999999998 888988876544
Q ss_pred hccCCCCceeechHHHHH--HhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccC
Q 017726 222 SKTAKSVRVFFDWKDYIK--FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQ 299 (367)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 299 (367)
+.+. ...+.++..... ++. + +.+++++..++++.++++.+.+.+.++++++..+++++|++.|++.|+.++.+
T Consensus 266 ~~~g--~~~~~d~~~~i~~a~~~-~--~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~G~~l~~~ 340 (475)
T PLN03226 266 KGQG--EGAVYDYEDKINFAVFP-G--LQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSKGYKLVTG 340 (475)
T ss_pred ccCC--CccHHHHHHHhccccCC-c--cCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEcC
Confidence 3221 111111111110 110 1 12357788899999999999988888899999999999999999999999875
Q ss_pred CCccCCCceEEEEc-CCCCCHHHHHHHHHhhCCeEEccCC-----CCCCCcEEEEee
Q 017726 300 KEEWFSDTVTAVIV-PSHINSSEIVRRAWQRYNLSLGLGL-----NKVAGKVFRIGH 350 (367)
Q Consensus 300 ~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~~gv~v~~g~-----~~~~~~~iRi~~ 350 (367)
.. .+.++.+.+ +.+++..++.+.|. +.||.+..+. .+..++.+|+|.
T Consensus 341 ~t---~~hi~lv~~~~~gi~~~~~~~~L~-~~~I~~nk~~~p~~~~~~~~~giRiGt 393 (475)
T PLN03226 341 GT---DNHLVLWDLRPLGLTGSRVEKVLD-LAHITLNKNAVPGDSSALVPGGVRIGT 393 (475)
T ss_pred CC---CCCEEEEEccCCCCCHHHHHHHHH-HCCCEECCCCCCCCcccCCCCCcccCc
Confidence 32 134566666 45778888888885 5699987653 123445699865
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-24 Score=189.76 Aligned_cols=318 Identities=19% Similarity=0.180 Sum_probs=243.2
Q ss_pred CCCCcccccCCCCCChHHHHHHHccCCCCCC----CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC
Q 017726 6 APGKNHLFVPGPVHIPDQVIRAMNRNNEDYR----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL 81 (367)
Q Consensus 6 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~ 81 (367)
.-+|.|+-....+.+-+++.+++.++..... -.+..+...++++.+|+++|.+. .++| +||-.|+..++.+++
T Consensus 44 f~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~e~--al~f-~SGy~AN~~~i~~l~ 120 (388)
T COG0156 44 FCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAEA--ALLF-SSGFVANLGLLSALL 120 (388)
T ss_pred eeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCc--EEEE-cccchhHHHHHHHhc
Confidence 3467788777777788888999998755422 23456888999999999999887 4555 778999999999999
Q ss_pred CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCC--CccEEEEEecCCCccccccHHHH
Q 017726 82 SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAH--TIKAICIVHNETATGVTNNLSKV 159 (367)
Q Consensus 82 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~--~~~lv~~~~~~n~tG~~~~~~~i 159 (367)
.++|.|+.-...|.|. ...++..+++++....+ |+++||+.+.+.... +.++|+....-+..|.+.|+++|
T Consensus 121 ~~~dli~~D~lnHASi--idG~rls~a~~~~f~Hn-----D~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l 193 (388)
T COG0156 121 KKGDLIFSDELNHASI--IDGIRLSRAEVRRFKHN-----DLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPEL 193 (388)
T ss_pred CCCcEEEEechhhhhH--HHHHHhCCCcEEEecCC-----CHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHH
Confidence 9998888777766663 36677888998888764 899999999873111 46888999999999999999999
Q ss_pred HHHHHhcCCCcEEEEeeeeccCcee---------eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCce
Q 017726 160 RKLLDEYRHPALFLVDGVSSICAID---------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV 230 (367)
Q Consensus 160 ~~~~~~~~~~~~vi~D~~~~~~~~~---------~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~ 230 (367)
.+++++ |++++++|++|+.|.+- +.+....+||++++++|.++ ..| |++.++..+++.+... .+.+
T Consensus 194 ~~L~~k--y~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlG-s~G-g~v~g~~~~~d~L~~~-ar~~ 268 (388)
T COG0156 194 VELAEK--YGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALG-SSG-GYIAGSAALIDYLRNR-ARPF 268 (388)
T ss_pred HHHHHH--hCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhc-ccC-ceeeCcHHHHHHHHHh-CCce
Confidence 999999 99999999999987653 11222245899999999995 665 9999999998887643 2222
Q ss_pred eechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEE
Q 017726 231 FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTA 310 (367)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 310 (367)
.+ ..+.++...++...+++.+.+. ...+++.+++..++++.+...|+.+.+. ...++.
T Consensus 269 if---------------StalpP~~aaa~~~al~~l~~~--~~~r~~L~~~~~~~~~~~~~~~~~~~~s-----~s~I~p 326 (388)
T COG0156 269 IF---------------STALPPAVAAAALAALRILEEG--PERRERLQELAAFFRSLLKALGLVLLPS-----ESPIIP 326 (388)
T ss_pred ec---------------cCCCCHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHhcCCccCCC-----CCCeee
Confidence 22 2246666667888899988865 5678899999999997777778777553 334666
Q ss_pred EEcCCCCCHHHHHHHHHhhCCeEEccCCCCCC---CcEEEEeecCCCCHHHHHH
Q 017726 311 VIVPSHINSSEIVRRAWQRYNLSLGLGLNKVA---GKVFRIGHLGHLNEVMFNF 361 (367)
Q Consensus 311 ~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~---~~~iRi~~~~~~~~~~~~~ 361 (367)
+.+.+.....++.+.|+++ ||.+.+...|.- ...+|+++...++++|+..
T Consensus 327 v~~gd~~~a~~~s~~l~~~-Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~ 379 (388)
T COG0156 327 VILGDEERALEASRALLEE-GIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDR 379 (388)
T ss_pred eEeCCHHHHHHHHHHHHHC-CeeEeeecCCCCCCCcceEEEEecCCCCHHHHHH
Confidence 6665545577888999877 999987766543 3569999988887766554
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-25 Score=204.47 Aligned_cols=343 Identities=15% Similarity=0.076 Sum_probs=233.8
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCC-----CCCCcHHHHHHHHHHHHHHHhcCCCC------ceEEecCChhHHHHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNED-----YRSPAVPALTKTLLEDIKKIFKTTSG------TPFLIPTTGTGAWESA 76 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~la~~~~~~~~------~~v~~~~ggt~al~~~ 76 (367)
++.+.+.|++...+.-+-+.+....+. ..+|....+..++.+++++++|.++. ..-++++|||+|+..+
T Consensus 131 P~f~a~~~~~~~~~~~lgd~l~sa~n~~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~a 210 (539)
T PLN02590 131 PSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVV 210 (539)
T ss_pred CCeeEeccCCCcHHHHHHHHHHHhcccccCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHH
Confidence 467788888887777777766665442 22566778889999999999999863 3368899999999876
Q ss_pred HHccCC-----------CCCeEEEEeCCcchHHHHHHHHHhCC---ceEEEeCCC--CCCCCHHHHHHHHhccC--CCCc
Q 017726 77 LTNTLS-----------PGDRIISFLIGQFSLLWIDQQQRLNF---NVDVVESDW--GEGAKLDVLASKLAADT--AHTI 138 (367)
Q Consensus 77 ~~~~~~-----------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~e~l~~~i~~~~--~~~~ 138 (367)
+.+... +.-.|++++..|+| +.+++..+|+ +++.||++. ++++|+++|+++|++.. ...|
T Consensus 211 l~aAR~~~~~~~g~~~~~~~vvy~S~~aH~S--v~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P 288 (539)
T PLN02590 211 VLAARDRILKKVGKTLLPQLVVYGSDQTHSS--FRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIP 288 (539)
T ss_pred HHHHHHHHHhhhcccCCCCEEEEecCCchHH--HHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCc
Confidence 643211 11133344555665 4577888887 588999884 46899999999997632 1346
Q ss_pred cEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeecc------ccccceEEEecCCCcccCCCcceee
Q 017726 139 KAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRM------DEWGIDVALTGSQKALSLPTGMGIV 212 (367)
Q Consensus 139 ~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~------~~~~~d~~~~s~~K~~~g~~g~g~~ 212 (367)
-+|+.+...+.+|.+.|+++|.++|++ +|+|++||+|++......+- .-..+|.++.++|||+..|.++|++
T Consensus 289 ~~VvaTaGTT~tGaiDpl~~Ia~i~~~--~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~l 366 (539)
T PLN02590 289 FFICATVGTTSSAAVDPLVPLGNIAKK--YGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPL 366 (539)
T ss_pred EEEEEEeCCCCCcccCCHHHHHHHHHH--hCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEE
Confidence 788999999999999999999999999 99999999999876543221 1125799999999999999999999
Q ss_pred eeCHHH--HHHhccCCCCceeechHH--HHHHhhcCCc-cCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Q 017726 213 CASPKA--LEASKTAKSVRVFFDWKD--YIKFYNLGTF-WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRL 287 (367)
Q Consensus 213 ~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~ 287 (367)
+++... .+.+.. ...|+.... ....+....+ ...+.. ...+.++.+++.+..+|+++++++..++++++.+
T Consensus 367 lvr~~~~l~~a~~~---~~~YL~~~~~~~~~~~d~~d~~i~lsRr-~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~ 442 (539)
T PLN02590 367 WVKDRYSLIDALKT---NPEYLEFKVSKKDTVVNYKDWQISLSRR-FRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFED 442 (539)
T ss_pred EecCHHHHHHHhhc---CHHHhCCcccccccCCCccccCCCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988653 221211 111110000 0000000000 011122 3447888899999999999999999999999999
Q ss_pred HHHHc-CCccccCCCccCCCceEEEEcCC-CCC-------HHHHHHHHHhhCCeEEccCCCCCCC-cEEEEeecCCCCHH
Q 017726 288 AVEAW-GLKNCTQKEEWFSDTVTAVIVPS-HIN-------SSEIVRRAWQRYNLSLGLGLNKVAG-KVFRIGHLGHLNEV 357 (367)
Q Consensus 288 ~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~l~~~L~~~~gv~v~~g~~~~~~-~~iRi~~~~~~~~~ 357 (367)
.|++. +++++.+ ....+++|+... +.+ ..++.++|.+.-.+++.+.. ..+ .++|+++.+..+.+
T Consensus 443 ~l~~~~~fel~~~----~~l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~--~~g~~~lR~~i~n~~T~~ 516 (539)
T PLN02590 443 YVAQDPSFEVVTT----RYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTA--LSGKFVLRFAVGAPLTEE 516 (539)
T ss_pred HHhcCCCeEEecC----CceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeE--ECCEEEEEEEecCCCCCH
Confidence 99997 7998886 345678888732 212 13566777655334443322 223 45999988876654
Q ss_pred HHHHhhh
Q 017726 358 MFNFQLL 364 (367)
Q Consensus 358 ~~~~~~l 364 (367)
+-...++
T Consensus 517 ~dv~~~~ 523 (539)
T PLN02590 517 KHVTEAW 523 (539)
T ss_pred HHHHHHH
Confidence 4433343
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=199.37 Aligned_cols=283 Identities=14% Similarity=0.098 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 119 (367)
....++++.+++++|.+. .++++||+.|+..++.+++.+||+|+++.+.|.+.. +...++..|+++..++.
T Consensus 61 pt~~~Le~~lA~l~G~~~---al~~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~---- 133 (386)
T PRK06767 61 PTVKLFEERMAVLEGGEE---ALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDM---- 133 (386)
T ss_pred cchHHHHHHHHHHhCCCc---EEEECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCC----
Confidence 457899999999999653 455678889999988888999999999988766543 33334556776666654
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecC
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS 199 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~ 199 (367)
.|++++++++. +++++|++++|+||+|.+.|+++|.++|++ +|+++++|++++.+....+. ..++|++++|+
T Consensus 134 -~d~~~l~~~i~----~~tklV~lesp~NptG~v~dl~~I~~la~~--~g~~vivD~a~a~~~~~~pl-~~g~Div~~S~ 205 (386)
T PRK06767 134 -ETEADIENKIR----PNTKLIFVETPINPTMKLIDLKQVIRVAKR--NGLLVIVDNTFCSPYLQRPL-ELGCDAVVHSA 205 (386)
T ss_pred -CCHHHHHHhhC----cCceEEEEeCCCCCCceecCHHHHHHHHHH--cCCEEEEECCCcccccCCch-hcCCcEEEecC
Confidence 27899999987 467999999999999999999999999999 99999999998755433333 35789999999
Q ss_pred CCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHH
Q 017726 200 QKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIER 277 (367)
Q Consensus 200 ~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~ 277 (367)
+|+++|+.. .|+++++++.++++.... +...|. ..+....+.+..+++ -+..+.++
T Consensus 206 sK~l~g~g~~~gG~v~~~~~~i~~~~~~~-------------~~~~g~----~~~~~~a~l~~~~L~-----tl~~r~~~ 263 (386)
T PRK06767 206 TKYIGGHGDVVAGVTICKTRALAEKIRPM-------------RKDIGG----IMAPFDAWLLLRGLK-----TLAVRMDR 263 (386)
T ss_pred cceecCCCCceeEEEEeChHHHHHHHHHH-------------HHHhCC----CCCHHHHHHHHcCCC-----cHHHHHHH
Confidence 999976543 489999998876653210 001121 122221111111111 25567788
Q ss_pred HHHHHHHHHHHHHHc-CCcccc-CCCc------cCCCceEEEEcCCC-CCHHHHHHHHHhhCCeEEccCC-C-----C--
Q 017726 278 HRRLGKATRLAVEAW-GLKNCT-QKEE------WFSDTVTAVIVPSH-INSSEIVRRAWQRYNLSLGLGL-N-----K-- 340 (367)
Q Consensus 278 ~~~~~~~l~~~L~~~-g~~~~~-~~~~------~~~~~~~~~~~~~~-~~~~~l~~~L~~~~gv~v~~g~-~-----~-- 340 (367)
..+++..+.+.|++. ++..+. |+.+ ...+.++.|.+..+ .+..+|++.|+ ..++.+.-|- . +
T Consensus 264 ~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l~-~~~~~~s~G~~~sl~~~p~~ 342 (386)
T PRK06767 264 HCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFINDLH-FITIAVSLGDTETLIQHPAT 342 (386)
T ss_pred HHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhCC-ccEEecCCCCcCccccCCCc
Confidence 899999999999997 766322 2111 12345888888422 24567888884 5566665441 1 1
Q ss_pred ---------------CCCcEEEEeecCCCCHHHHHHhh
Q 017726 341 ---------------VAGKVFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 341 ---------------~~~~~iRi~~~~~~~~~~~~~~~ 363 (367)
...+.+|+| .|-++.+|+..++
T Consensus 343 ~~~~~~~~~~~~~~gi~~~l~R~s-vGlE~~~dl~~dl 379 (386)
T PRK06767 343 MTHAAIPAELRQEMGIYDNLIRLS-VGLESWEDIVSDL 379 (386)
T ss_pred cccccCCHHHHHhcCCCCCeEEEE-eccCCHHHHHHHH
Confidence 012469998 5777777776654
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-24 Score=190.64 Aligned_cols=281 Identities=14% Similarity=0.028 Sum_probs=176.3
Q ss_pred hHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHH
Q 017726 21 PDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWI 100 (367)
Q Consensus 21 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~ 100 (367)
|+.+.+++.+.......|. ....+++.++++++. +|++|+|+++++..++.. +.+||.|+++.|.|+.+.
T Consensus 22 p~~~~~a~~~~~~~~~~yp---~~~~l~~~ia~~~~~----~I~vt~G~~~al~~~~~~-~~~gd~vlv~~P~y~~~~-- 91 (311)
T PRK08354 22 PEWLDEMFERAKEISGRYT---YYEWLEEEFSKLFGE----PIVITAGITEALYLIGIL-ALRDRKVIIPRHTYGEYE-- 91 (311)
T ss_pred CHHHHHHHHHHHHHhhcCC---ChHHHHHHHHHHHCC----CEEECCCHHHHHHHHHHh-hCCCCeEEEeCCCcHHHH--
Confidence 4566777765322211222 135789999999982 499999999999887754 458999999999777643
Q ss_pred HHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHH---HHHHHHHhcCCCcEEEEeee
Q 017726 101 DQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLS---KVRKLLDEYRHPALFLVDGV 177 (367)
Q Consensus 101 ~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~---~i~~~~~~~~~~~~vi~D~~ 177 (367)
..++..|.+++.++ +|++.+++.++ +++++++++|+||||.+++.+ +|.++|++ +|+++|+|++
T Consensus 92 ~~~~~~g~~~~~~~------~d~~~l~~~~~-----~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~--~~~~li~De~ 158 (311)
T PRK08354 92 RVARFFAARIIKGP------NDPEKLEELVE-----RNSVVFFCNPNNPDGKFYNFKELKPLLDAVED--RNALLILDEA 158 (311)
T ss_pred HHHHHcCCEEeecC------CCHHHHHHhhc-----CCCEEEEecCCCCCCCccCHHHHHHHHHHhhh--cCcEEEEeCc
Confidence 56778899887653 57888888775 357899999999999999754 55666677 9999999999
Q ss_pred eccCceeeccccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHH
Q 017726 178 SSICAIDFRMDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQL 255 (367)
Q Consensus 178 ~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (367)
|......-........+++.|++|.++ .+| +|++++ ..+.+..... +++.+..+
T Consensus 159 y~~f~~~~~~~~~~~vi~~~S~SK~~~-l~GlRiG~~v~---~~~~l~~~~~--------------------~~~~~~~~ 214 (311)
T PRK08354 159 FIDFVKKPESPEGENIIKLRTFTKSYG-LPGIRVGYVKG---FEEAFRSVRM--------------------PWSIGSTG 214 (311)
T ss_pred chhccccccccCCCcEEEEeccHhhcC-Cccceeeeeee---hHHHHHHcCC--------------------CccCCHHH
Confidence 965432211111245688999999995 444 699988 3333332210 22233322
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEE
Q 017726 256 LYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSL 334 (367)
Q Consensus 256 ~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v 334 (367)
..++.+ +.+.+.+ +..++.+.+++..+.+ +.....+ .++ ++++.++ +..++.+.|. ++||.+
T Consensus 215 ~~~~~~----~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~----~~~-~~~~~~~---~~~~~~~~l~-~~gv~v 277 (311)
T PRK08354 215 YAFLEF----LIEDDFE----HLRKTMPLIWREKERFEKALYVKS----DAN-FFIKDVG---DAEKFVEFLK-RNGILV 277 (311)
T ss_pred HHHHHH----HHHhHHH----HHHHHHHHHHHHHHHHHHhcCCCC----CCc-EEEEECC---CHHHHHHHHH-HCCeEE
Confidence 222222 2221122 2223333333333333 2222222 344 4445543 5678999886 459999
Q ss_pred ccCCCCCCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 335 GLGLNKVAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 335 ~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
++|..+..++++||++. ..++.+.+..+|++
T Consensus 278 ~~g~~f~~~~~iRi~~~-~~~~~~~l~~al~~ 308 (311)
T PRK08354 278 RDCTSFGLPGYIRFSVR-DREENEKLIRALRE 308 (311)
T ss_pred EecccCCCCCeEEEEeC-CHHHHHHHHHHHHH
Confidence 99865544578999964 44445555555553
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-24 Score=194.75 Aligned_cols=330 Identities=15% Similarity=0.093 Sum_probs=227.5
Q ss_pred CcccccCCCCCChHHHHHHHccCCCC--------CCCC---cH-HHHHHHHHHHHHHHhcCCCCce-E-EecCChhHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNED--------YRSP---AV-PALTKTLLEDIKKIFKTTSGTP-F-LIPTTGTGAWE 74 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~--------~~~~---~~-~~~~~~~~~~la~~~~~~~~~~-v-~~~~ggt~al~ 74 (367)
+.+.++|+---+++.|++++-....+ .++| .+ .++..-+.++..++||++.+++ + +-.-||+.|+.
T Consensus 149 ~~l~LIASEN~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~ 228 (586)
T PLN02271 149 KGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANF 228 (586)
T ss_pred cCeeeccccccCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeeccHHHHHH
Confidence 56778888889999999998875332 1122 22 3444556788888999875221 1 33348899999
Q ss_pred HHHHccCCCCCeEEEEeCCcchHHHH-------HHHHHhCCceEEEe--CC-CCCCCCHHHHHHHHhccCCCCccEEEEE
Q 017726 75 SALTNTLSPGDRIISFLIGQFSLLWI-------DQQQRLNFNVDVVE--SD-WGEGAKLDVLASKLAADTAHTIKAICIV 144 (367)
Q Consensus 75 ~~~~~~~~~gd~vl~~~~~~~~~~~~-------~~~~~~g~~~~~v~--~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~ 144 (367)
.++.++++|||+|+..+.++.++... ..+...|..+..++ .+ +++.+|.+++++...+ .+||+|++.
T Consensus 229 aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~---~rPKLII~g 305 (586)
T PLN02271 229 AVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALD---FRPKILICG 305 (586)
T ss_pred HHHHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhh---cCCeEEEEC
Confidence 99999999999999998877766421 12244566666666 43 4578999999995543 688999998
Q ss_pred ecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccc---cccceEEEecCCCcccCCCcceeeeeCHHHHHH
Q 017726 145 HNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMD---EWGIDVALTGSQKALSLPTGMGIVCASPKALEA 221 (367)
Q Consensus 145 ~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~---~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~ 221 (367)
+..+| ...|+++++++|++ +|+++++|++|..|.++.+.. -.++|++++++||||.||.| |+++.+++....
T Consensus 306 ~Sayp--r~~D~~~i~eIAde--vGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtLrGPrG-G~I~~r~~~~~~ 380 (586)
T PLN02271 306 GSSYP--REWDYARFRQIADK--CGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGPRG-GIIFYRKGPKLR 380 (586)
T ss_pred chhcc--CcCCHHHHHHHHHH--cCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccCCCCCc-eEEEeccccccc
Confidence 87777 67899999999999 999999999999988755421 22689999999999999999 888887664322
Q ss_pred hccCCCCceeec--hHHHHHHhhcCCc--cCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccc
Q 017726 222 SKTAKSVRVFFD--WKDYIKFYNLGTF--WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNC 297 (367)
Q Consensus 222 ~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~ 297 (367)
+.... .++..+ ..+..++.+...+ ....+....++++..+++.......++..++..+|++.|.+.|.+.|++++
T Consensus 381 ~~g~~-gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~G~~vv 459 (586)
T PLN02271 381 KQGML-LSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRRKCRLV 459 (586)
T ss_pred ccCCc-cccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHCCCeEe
Confidence 22111 111111 1111111111100 011233444789999999887666688889999999999999999999998
Q ss_pred cCCCccCCCceEEEEcC-CCCCHHHHHHHHHhhCCeEEcc----CC-CCCCCcEEEEeec
Q 017726 298 TQKEEWFSDTVTAVIVP-SHINSSEIVRRAWQRYNLSLGL----GL-NKVAGKVFRIGHL 351 (367)
Q Consensus 298 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~gv~v~~----g~-~~~~~~~iRi~~~ 351 (367)
+.. ..++++++++. .+++.....+.| ++.||.+.- +. .+..++.+|||..
T Consensus 460 ~gg---TdnHlvLvDl~~~g~~G~~ae~~L-e~~~I~~Nkn~iP~d~~~~~psGiRiGT~ 515 (586)
T PLN02271 460 TGG---TDNHLLLWDLTTLGLTGKNYEKVC-EMCHITLNKTAIFGDNGTISPGGVRIGTP 515 (586)
T ss_pred eCC---CCcceeeecCcccCCCHHHHHHHH-HHcCeEeccccCCCCCCCCCCCcccccCH
Confidence 853 34556777772 355666665555 677998852 22 1233456999873
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-25 Score=201.30 Aligned_cols=250 Identities=12% Similarity=0.039 Sum_probs=177.7
Q ss_pred CCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccC-CCCCeEEEEeCCcchHHHHHHHHHhCCce
Q 017726 37 SPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTL-SPGDRIISFLIGQFSLLWIDQQQRLNFNV 110 (367)
Q Consensus 37 ~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~~~g~~~ 110 (367)
.|.......++|+.+++++ |.+ .+++|++|+|+++++..++.+++ ++||.|++++|.|+.+. ..++..|.++
T Consensus 102 ~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~--~~~~~~g~~~ 179 (407)
T PLN02368 102 AYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYS--ATISLLGGTL 179 (407)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHH--HHHHHcCCEE
Confidence 3444455668888888877 543 34569999999999999998887 79999999999887754 5577889999
Q ss_pred EEEeCCCC--CCCCHHHHHHHHhccC--CCCccEEEEEecCCCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccCce
Q 017726 111 DVVESDWG--EGAKLDVLASKLAADT--AHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAI 183 (367)
Q Consensus 111 ~~v~~~~~--~~~d~e~l~~~i~~~~--~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~ 183 (367)
+.++++.+ +.+|++++++++++.. ..++|++++++|+||||.+++ +++|.++|++ +|++||+|++|.....
T Consensus 180 v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~--~~~~II~DE~Y~~l~y 257 (407)
T PLN02368 180 VPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQ--ERLVLLGDEVYQQNIY 257 (407)
T ss_pred EEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHH--cCCEEEEEcccccccc
Confidence 99998653 6889999999987411 026899999999999999997 5567778888 9999999999865432
Q ss_pred ----ee-cc-------c----cccceEEEecCCCcccCCCc--ceeeee---CHHHHHHhccCCCCceeechHHHHHHhh
Q 017726 184 ----DF-RM-------D----EWGIDVALTGSQKALSLPTG--MGIVCA---SPKALEASKTAKSVRVFFDWKDYIKFYN 242 (367)
Q Consensus 184 ----~~-~~-------~----~~~~d~~~~s~~K~~~g~~g--~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (367)
++ +. . ..+..+++.|+||.+.+.+| +|++++ ++++++.+.....
T Consensus 258 ~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~--------------- 322 (407)
T PLN02368 258 QDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVAS--------------- 322 (407)
T ss_pred CCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHhc---------------
Confidence 11 10 0 11246888999999853444 699984 8888877764310
Q ss_pred cCCccCCCCcHHHHHHHHHHHHHH-------H--HhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEE
Q 017726 243 LGTFWPYTPSIQLLYGLRAALDLI-------F--EEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVI 312 (367)
Q Consensus 243 ~~~~~~~~~~~~~~~al~~al~~~-------~--~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 312 (367)
. .++++.....++.+++..- . ...++++.+.++++++.+.+.|+++ |+.+..| .+++++|.+
T Consensus 323 -~---~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P----~Gafy~~~~ 394 (407)
T PLN02368 323 -I---ALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFT----EGAMYSFPQ 394 (407)
T ss_pred -c---cCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCC----CeeeEeccC
Confidence 0 1234443334444444310 0 0113456788899999999999998 8888777 466666655
Q ss_pred c
Q 017726 313 V 313 (367)
Q Consensus 313 ~ 313 (367)
+
T Consensus 395 i 395 (407)
T PLN02368 395 I 395 (407)
T ss_pred C
Confidence 5
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-24 Score=197.33 Aligned_cols=325 Identities=14% Similarity=0.101 Sum_probs=211.6
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCCCCC-----c---HHHHHHHHHH----HHHHHhcCCCCceEEecCChhHHHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSP-----A---VPALTKTLLE----DIKKIFKTTSGTPFLIPTTGTGAWESA 76 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~-----~---~~~~~~~~~~----~la~~~~~~~~~~v~~~~ggt~al~~~ 76 (367)
+.+++.|+-..+++.+++++......+++. . -.+...++++ .+++++|.+. .+++++||+.|+..+
T Consensus 29 ~~~~l~~sen~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~--alv~~~SG~~A~~~~ 106 (416)
T PRK13034 29 DHLELIASENFTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDY--ANVQPHSGSQANGAV 106 (416)
T ss_pred cCeeecccccCCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCc--eEEecCCcHHHHHHH
Confidence 445566666667999999998874222211 0 0245666666 9999999875 346678999999999
Q ss_pred HHccCCCCCeEEEEeCCcchHHHHHHHH--HhCCce--EEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcc
Q 017726 77 LTNTLSPGDRIISFLIGQFSLLWIDQQQ--RLNFNV--DVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATG 151 (367)
Q Consensus 77 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~--~~g~~~--~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG 151 (367)
+.+++.+||+|++....|.+.... .++ ..+..+ ..++.+. .+.+|+++++++++. .++|+|+++++ .+|
T Consensus 107 l~al~~~GD~Vl~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~klVi~~~~--~~g 180 (416)
T PRK13034 107 YLALLKPGDTILGMSLSHGGHLTH-GAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKE---HKPKLIIAGFS--AYP 180 (416)
T ss_pred HHHhcCCCCEEEEcCccceeeeec-CCcceeccceeeeEEcccccccCCcCHHHHHHHHhh---cCCeEEEECCC--ccc
Confidence 999999999999998877763211 111 112222 2333332 356899999999864 35688877553 367
Q ss_pred ccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccc---cccceEEEecCCCcccCCCcceeeeeCHHH-HHHhccCCC
Q 017726 152 VTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMD---EWGIDVALTGSQKALSLPTGMGIVCASPKA-LEASKTAKS 227 (367)
Q Consensus 152 ~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~---~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~-~~~~~~~~~ 227 (367)
...|+++|.++|++ +|+++++|++|++|....+.. ..++|++++|+||+++|+.| |+++++++. .+++.....
T Consensus 181 ~~~dl~~l~~la~~--~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~g~~G-G~v~~~~~~~~~~~~~~~~ 257 (416)
T PRK13034 181 RELDFARFREIADE--VGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPRG-GMILTNDEEIAKKINSAVF 257 (416)
T ss_pred cccCHHHHHHHHHH--cCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCCCCCC-eEEEECcHHHHHHHHhhcC
Confidence 88899999999999 999999999998876543211 12589999999999988887 766665544 444433211
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCc
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDT 307 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 307 (367)
. + + ...+....++++..++....+.+..+.+++..+++++|++.|++.|+++..+. ....
T Consensus 258 ~---------------~-~-~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~G~~~~~~~---~~t~ 317 (416)
T PRK13034 258 P---------------G-L-QGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKERGYDLVSGG---TDNH 317 (416)
T ss_pred C---------------c-c-cCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHcCCEeccCC---CCCc
Confidence 1 1 0 01122333344444444443333456688999999999999999998886531 1233
Q ss_pred eEEEEcCC-CCCHHHHHHHHHhhCCeEEccC------CCCCCCcEEEEeecC----CC--CHHHHHHhhhh
Q 017726 308 VTAVIVPS-HINSSEIVRRAWQRYNLSLGLG------LNKVAGKVFRIGHLG----HL--NEVMFNFQLLF 365 (367)
Q Consensus 308 ~~~~~~~~-~~~~~~l~~~L~~~~gv~v~~g------~~~~~~~~iRi~~~~----~~--~~~~~~~~~l~ 365 (367)
++.+.+.+ +.+...+.++|. +.||.+..- ..+..+..+|+|++. .. ++.+....+|.
T Consensus 318 i~~v~~~~~~~~~~~~~~~L~-~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~ 387 (416)
T PRK13034 318 LLLVDLRPKGLSGKDAEQALE-RAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWIL 387 (416)
T ss_pred EEEEEcCCCCCCHHHHHHHHH-hCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHH
Confidence 55565533 445666778885 559998741 112234569999766 33 34455555544
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-25 Score=204.17 Aligned_cols=331 Identities=15% Similarity=0.100 Sum_probs=227.6
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCC-----CCCCcHHHHHHHHHHHHHHHhcCCCC------ceEEecCChhHHHHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNED-----YRSPAVPALTKTLLEDIKKIFKTTSG------TPFLIPTTGTGAWESA 76 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~la~~~~~~~~------~~v~~~~ggt~al~~~ 76 (367)
++.+.+.|++...+..+.+.+....+. ..+|.......++.+++++++|.++. ...++|+|||+|+..+
T Consensus 83 P~f~~~~~~~~~~~~~lad~l~~~~n~~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~a 162 (490)
T PLN02880 83 PNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVV 162 (490)
T ss_pred CCeeEeccCCCcHHHHHHHHHHHhhccCCcccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHH
Confidence 466777888776666666655554332 12466678888999999999999864 2368899999998876
Q ss_pred HHccCC----------CCC-eEEEEeCCcchHHHHHHHHHhCCc---eEEEeCCC--CCCCCHHHHHHHHhccC--CCCc
Q 017726 77 LTNTLS----------PGD-RIISFLIGQFSLLWIDQQQRLNFN---VDVVESDW--GEGAKLDVLASKLAADT--AHTI 138 (367)
Q Consensus 77 ~~~~~~----------~gd-~vl~~~~~~~~~~~~~~~~~~g~~---~~~v~~~~--~~~~d~e~l~~~i~~~~--~~~~ 138 (367)
+.+..+ ... .|+++...|+| +.+++..+|+. ++.||++. ++++|+++|+++|++.. ...|
T Consensus 163 l~~AR~~~~~~~g~~~~~~~vv~~S~~aH~S--v~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p 240 (490)
T PLN02880 163 LLAARDRVLRKVGKNALEKLVVYASDQTHSA--LQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIP 240 (490)
T ss_pred HHHHHHHHHHHhcccccCCeEEEEcCCchHH--HHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCcc
Confidence 643210 122 34445556666 45778888884 78899875 56899999999997631 1346
Q ss_pred cEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceee-----cccc-ccceEEEecCCCcccCCCcceee
Q 017726 139 KAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF-----RMDE-WGIDVALTGSQKALSLPTGMGIV 212 (367)
Q Consensus 139 ~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~-----~~~~-~~~d~~~~s~~K~~~g~~g~g~~ 212 (367)
-+|+.+...+.+|.+.|+++|.++|++ +|+|++||++++.+.+.. .+.. .++|+++.++|||+..|.++|++
T Consensus 241 ~~vvataGTT~~GaiDpl~eI~~i~~~--~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~l 318 (490)
T PLN02880 241 FFLCATVGTTSSTAVDPLLELGKIAKS--NGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLL 318 (490)
T ss_pred EEEEEecCCCcCcccCcHHHHHHHHHH--cCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEE
Confidence 788999999999999999999999999 999999999998765433 1222 36899999999999999999999
Q ss_pred eeCHHHHHHhccCCCCceee-----------chHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Q 017726 213 CASPKALEASKTAKSVRVFF-----------DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRL 281 (367)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~ 281 (367)
++++... ..........|+ ++.++. ++.++ . ...+.++.+++.+..+|+.++.++..++
T Consensus 319 lvr~~~~-l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~--i~~~r------r-~~alklw~~l~~~G~~g~~~~i~~~~~l 388 (490)
T PLN02880 319 WVKDRNA-LIQSLSTNPEFLKNKASQANSVVDYKDWQ--IPLGR------R-FRSLKLWMVLRLYGVENLQSYIRNHIKL 388 (490)
T ss_pred EEeCHHH-HHHHHccCHHHhcCccccccCCCChhccC--cCCCC------c-ccHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 9885331 111111111111 100000 11111 1 1124666677777778888888888899
Q ss_pred HHHHHHHHHHc-CCccccCCCccCCCceEEEEcCC-CCCH-------HHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC
Q 017726 282 GKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS-HINS-------SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352 (367)
Q Consensus 282 ~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~ 352 (367)
++++.+.|++. +++++.+ ....+++|+++. ..+. .++.++|.+...+.+..... ....++|+++..
T Consensus 389 A~~~~~~l~~~~~~el~~~----~~~~iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~-~g~~~lR~~~~n 463 (490)
T PLN02880 389 AKEFEQLVAQDSRFEVVTP----RIFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTVL-SGKYVLRFAVGA 463 (490)
T ss_pred HHHHHHHHhcCCCEEEecC----CceEEEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEEE-CCEEEEEEEecC
Confidence 99999999987 8888886 234578888842 2221 35677776666666654322 123469999988
Q ss_pred CCCHH
Q 017726 353 HLNEV 357 (367)
Q Consensus 353 ~~~~~ 357 (367)
..+..
T Consensus 464 ~~tt~ 468 (490)
T PLN02880 464 PLTEE 468 (490)
T ss_pred CCCCH
Confidence 77653
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-24 Score=196.21 Aligned_cols=283 Identities=14% Similarity=0.093 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 119 (367)
....++++.+++++|.+.. +++++|+.++..++.+++.+||+|+++++.|.+.. +...++..|+++..++
T Consensus 65 p~~~~Le~~lA~l~G~~~~---~~~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd----- 136 (398)
T PRK07504 65 PTVDMFEKRMCALEGAEDA---RATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVD----- 136 (398)
T ss_pred chHHHHHHHHHHHhCCCee---eEecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEEC-----
Confidence 5578999999999998762 34678899998888778899999999998777654 3345567799888885
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecC
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS 199 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~ 199 (367)
..|+++++++++ +++|+|++++|+||+|.+.|+++|.++|++ +|+++++|++++.+... .....++|++++|+
T Consensus 137 ~~d~e~l~~ai~----~~tklV~lesp~NptG~v~dl~~I~~la~~--~gi~lvvD~a~a~~~~~-~~~~~gaDivv~S~ 209 (398)
T PRK07504 137 GLDLDNWEKAVR----PNTKVFFLESPTNPTLEVIDIAAVAKIANQ--AGAKLVVDNVFATPLFQ-KPLELGAHIVVYSA 209 (398)
T ss_pred CCCHHHHHHhcC----cCceEEEEECCCCCCcEecCHHHHHHHHHH--cCCEEEEECCccccccC-CchhhCCCEEEeec
Confidence 268999999997 467999999999999999999999999999 99999999999865443 22345799999999
Q ss_pred CCcccCCC-cc-eeeeeCHHHHHH-hccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 200 QKALSLPT-GM-GIVCASPKALEA-SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 200 ~K~~~g~~-g~-g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
+|+++|+. ++ |+++.+++.+.+ +... . ...|. .++....+.+..+++. +..+.+
T Consensus 210 sK~l~g~g~~~GG~vv~~~~~i~~~~~~~-------------~-~~~g~----~~s~~~A~~~l~~L~t-----l~~R~~ 266 (398)
T PRK07504 210 TKHIDGQGRCLGGVVLSDKAWIEEHLQDY-------------F-RHTGP----SLSPFNAWTLLKGLET-----LPVRVR 266 (398)
T ss_pred cccccCCccceEEEEEeCcHHHHHHHHHH-------------H-HHhCC----CCCHHHHHHHHhccch-----HHHHHH
Confidence 99997643 23 677787776543 2210 0 01121 2333222222222222 566777
Q ss_pred HHHHHHHHHHHHHHHc-CCc-cccC----CCc--------cCCCceEEEEcCCCC-CHHHHHHHHHhhCCeEEccCC-C-
Q 017726 277 RHRRLGKATRLAVEAW-GLK-NCTQ----KEE--------WFSDTVTAVIVPSHI-NSSEIVRRAWQRYNLSLGLGL-N- 339 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~~-~~~~----~~~--------~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~v~~g~-~- 339 (367)
+..+++..+.+.|++. ++. +.-| .+. ...+.++.|.+..+. ....|++.|+ -..+.+.-|. .
T Consensus 267 ~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~~~~~l~-~~~~~~slG~~~s 345 (398)
T PRK07504 267 QQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGKEAAFRFLNALK-IVRISNNLGDAKS 345 (398)
T ss_pred HHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCCHHHHHHHHHhCC-cceecccCCCCCe
Confidence 8889999999999986 543 2222 111 013568899983221 1234555552 2233222221 1
Q ss_pred ----C-----------------CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 340 ----K-----------------VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 340 ----~-----------------~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
+ ..++.+|+| .|-++.+|+..++.
T Consensus 346 l~~~p~~~~~~~~~~~~~~~~gi~~~liR~s-vGlE~~~dl~~dl~ 390 (398)
T PRK07504 346 LITHPATTTHKNLSPEARAELGISEGFLRLS-AGLEDTDDLIEDLA 390 (398)
T ss_pred eeeCCCCCCcccCCHHHHHhcCCCCCeEEEE-eccCCHHHHHHHHH
Confidence 0 113469998 57777777766543
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=196.08 Aligned_cols=283 Identities=17% Similarity=0.122 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 119 (367)
....+++++++++.|.+ .+++++||++++..++.+++.+||+|+++++.|.+.. +...+...++++..++
T Consensus 52 pt~~~L~~~lA~l~g~~---~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd----- 123 (386)
T PRK08045 52 PTRDVVQRALAELEGGA---GAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD----- 123 (386)
T ss_pred ccHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeC-----
Confidence 55779999999999953 3888999999999999999999999999999887543 4444555566766664
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecC
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS 199 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~ 199 (367)
..|+++++++++ +++|+|++++|+||||.+.|+++|.++|++ +|+++++|+++..+....+. ..++|+++.|+
T Consensus 124 ~~d~e~l~~~l~----~~tklV~l~sP~NPtG~v~di~~I~~ia~~--~g~~vivDeay~~~~~~~pl-~~gaDivv~S~ 196 (386)
T PRK08045 124 QGDEQALRAALA----EKPKLVLVESPSNPLLRVVDIAKICHLARE--AGAVSVVDNTFLSPALQNPL-ALGADLVLHSC 196 (386)
T ss_pred CCCHHHHHHhcc----cCCeEEEEECCCCCCCEecCHHHHHHHHHH--cCCEEEEECCCCccccCCch-hhCCCEEEeec
Confidence 248899999987 467999999999999999999999999999 99999999999766443233 45789999999
Q ss_pred CCcccCCCc--ceeeee-CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 200 QKALSLPTG--MGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 200 ~K~~~g~~g--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
+|+++|+.+ .|+++. ++++++++.... . ..|. +.+......+..+++. +..+++
T Consensus 197 tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~------------~--~~g~----~~~p~~~~l~~rgl~t-----l~~R~~ 253 (386)
T PRK08045 197 TKYLNGHSDVVAGVVIAKDPDVVTELAWWA------------N--NIGV----TGGAFDSYLLLRGLRT-----LVPRME 253 (386)
T ss_pred ceeccCCCCceeEEEEeCcHHHHHHHHHHH------------H--hcCC----CCCHHHHHHHHhhhcc-----HHHHHH
Confidence 999988776 477766 466665553210 0 1121 2333222222223322 677888
Q ss_pred HHHHHHHHHHHHHHHc-CCc-cccC----CCc--------cCCCceEEEEcCCCCC-HHHHHHHHHhhCCeEEccCC-C-
Q 017726 277 RHRRLGKATRLAVEAW-GLK-NCTQ----KEE--------WFSDTVTAVIVPSHIN-SSEIVRRAWQRYNLSLGLGL-N- 339 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~~-~~~~----~~~--------~~~~~~~~~~~~~~~~-~~~l~~~L~~~~gv~v~~g~-~- 339 (367)
+..+++..+.+.|++. .+. +.-| ++. ...+.+++|.+..+.+ ...|++.|+ -..+.+.-|- .
T Consensus 254 ~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~-~~~~~~s~G~~~s 332 (386)
T PRK08045 254 LAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLS-LFTLAESLGGVES 332 (386)
T ss_pred HHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhcc-ceeEeccCCCCce
Confidence 9999999999999987 432 2112 111 1235688898832211 234555552 2222222221 0
Q ss_pred ----C-----------------CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 340 ----K-----------------VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 340 ----~-----------------~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
+ ..++.||+| .|-++.+|+..++.
T Consensus 333 l~~~~~~~~~~~~~~~~~~~~gi~~~liR~s-vGlE~~~dl~~dl~ 377 (386)
T PRK08045 333 LISHAATMTHAGMAPEARAAAGISETLLRIS-TGIEDGEDLIADLE 377 (386)
T ss_pred eEeCCCCcccccCCHHHHHhcCCCCCeEEEE-eCcCCHHHHHHHHH
Confidence 0 113569998 57777777776654
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-24 Score=192.34 Aligned_cols=282 Identities=12% Similarity=0.075 Sum_probs=207.2
Q ss_pred HHHHHHHHHHHHHHHhcCCC-CceEEecCChhHHHHHHHHccC--CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCC
Q 017726 40 VPALTKTLLEDIKKIFKTTS-GTPFLIPTTGTGAWESALTNTL--SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESD 116 (367)
Q Consensus 40 ~~~~~~~~~~~la~~~~~~~-~~~v~~~~ggt~al~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 116 (367)
..+...++.+++++++|.++ ...-++|+|||+++..++.+.. .+...++++...|+|. .+++..+|++++.||++
T Consensus 131 s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv--~KAa~llgi~~~~Vp~d 208 (470)
T PLN02263 131 SRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSV--FKAARMYRMECVKVDTL 208 (470)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHH--HHHHHhcCCcceEeccC
Confidence 45678889999999999975 3356899999999998776532 2334667777777774 48899999999999999
Q ss_pred CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCc-----EEEEeeeeccCcee-------
Q 017726 117 WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPA-----LFLVDGVSSICAID------- 184 (367)
Q Consensus 117 ~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~-----~vi~D~~~~~~~~~------- 184 (367)
.++++|+++|+++|.+++ .+|-+|+.+.+.+++|.+.|+++|.++|++ +|+ |++||+|++...++
T Consensus 209 ~~g~mD~~aL~~aI~~d~-~~P~iVvataGTT~~GAiDpi~eIa~i~~~--~g~~~~~iwlHVDAA~GG~~lPf~~~~~~ 285 (470)
T PLN02263 209 VSGEIDCADFKAKLLANK-DKPAIINVNIGTTVKGAVDDLDLVIKTLEE--CGFSQDRFYIHCDGALFGLMMPFVKRAPK 285 (470)
T ss_pred CCCcCcHHHHHHHHHhCC-CCcEEEEEEecCCCCcCCCCHHHHHHHHHH--cCCccCCeeEEEeccchhhHhhhcccccc
Confidence 999999999999998765 457788899999999999999999999999 775 99999998765443
Q ss_pred eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHH
Q 017726 185 FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALD 264 (367)
Q Consensus 185 ~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~ 264 (367)
+++.. .+|.++.++|||+..|.++|+++.+++..+.+.. ...|+...+ ....++.+....+.++.+++
T Consensus 286 ~df~~-~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~~---~~~Yl~~~d--------~ti~gSR~g~~al~lW~~L~ 353 (470)
T PLN02263 286 VTFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS---NVEYLASRD--------ATIMGSRNGHAPIFLWYTLN 353 (470)
T ss_pred cCCCc-CccEEEECCccccCCCcCEEEEEEehhhHhhhcc---ChHhhCCCC--------CCcCCCCCcHHHHHHHHHHH
Confidence 23332 3899999999999999999999999776543321 111211000 01133444444578899999
Q ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCc
Q 017726 265 LIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGK 344 (367)
Q Consensus 265 ~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~ 344 (367)
.+..+|++++.+++.++++++.+.|++.|+....+ .....+.|..|. ++. ..+ |..+.. .+.
T Consensus 354 ~~G~~G~~~~i~~~~~~A~~l~~~l~~~g~~~~~~----p~s~~V~f~~p~----~~~---~~~--gW~L~~-----~~~ 415 (470)
T PLN02263 354 RKGYRGFQKEVQKCLRNAHYLKDRLREAGISAMLN----ELSSTVVFERPK----DEE---FVR--RWQLAC-----QGN 415 (470)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeC----CCceEEEEecCc----hHH---hhc--ceEEcc-----CCC
Confidence 99999999999999999999999999998766553 223356666531 111 122 433332 124
Q ss_pred EEEEeecCCCCH
Q 017726 345 VFRIGHLGHLNE 356 (367)
Q Consensus 345 ~iRi~~~~~~~~ 356 (367)
.+++......+.
T Consensus 416 ~~Hivvmphv~~ 427 (470)
T PLN02263 416 IAHVVVMPSVTI 427 (470)
T ss_pred cEEEEEcCCCCH
Confidence 588887776553
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=179.99 Aligned_cols=304 Identities=18% Similarity=0.123 Sum_probs=233.3
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCcchHH---HHHHHHHhCCceE
Q 017726 37 SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQFSLL---WIDQQQRLNFNVD 111 (367)
Q Consensus 37 ~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~~~~~---~~~~~~~~g~~~~ 111 (367)
...+.++-+.+-.+++-++|+.+.+ ++++++.+--+...+.+. ..+|++||++..+.|..- ....+...+..
T Consensus 71 ~~~W~~lp~~lgdklApLiGA~~~E-vvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~-- 147 (407)
T COG3844 71 KADWFDLPERLGDKLAPLIGARAGE-VVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG-- 147 (407)
T ss_pred CCchhhchhHHHHHhhhhhcCCCCc-eEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhccc--
Confidence 4566777888999999999999876 777777776666655543 356999999988766642 33444544443
Q ss_pred EEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeecccccc
Q 017726 112 VVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWG 191 (367)
Q Consensus 112 ~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~ 191 (367)
.+-...++++++++++++ .+.+|++++.+.-||...|+.+|..++|+ +|++++.|-+|+.|..+.++...+
T Consensus 148 ---~~~~~~~~P~~~~~~~~d----d~AvV~L~~V~y~TGql~dm~aiT~~AH~--~galv~wDLAHsaGavp~~Lh~~g 218 (407)
T COG3844 148 ---YDLEGVIAPRALEEAITD----DVAVVLLSHVNYKTGQLLDMRAITALAHQ--HGALVGWDLAHSAGAVPVDLHAAG 218 (407)
T ss_pred ---ccceeeeChHHHHHhhcc----ceEEEEeccccccccceeeHHHHHHHHHh--cCceEEeehhcccCCcceeecccC
Confidence 223345578899999984 56899999999999999999999999999 999999999999999999999999
Q ss_pred ceEEEecCCCcccCCCc-ceeeeeCHHHHHHhccCCCCceeech-HHHHHHhh----cCCccCCCCcHHHHHHHHHHHHH
Q 017726 192 IDVALTGSQKALSLPTG-MGIVCASPKALEASKTAKSVRVFFDW-KDYIKFYN----LGTFWPYTPSIQLLYGLRAALDL 265 (367)
Q Consensus 192 ~d~~~~s~~K~~~g~~g-~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~al~~al~~ 265 (367)
+|+.+.|++|+++|.+| .+++++.+++.++..+.....+.... ....+.++ ...|..+++++..+.++..+|+.
T Consensus 219 aDfaigcsyKYLNgGPGapa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDi 298 (407)
T COG3844 219 ADFAIGCSYKYLNGGPGAPAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDI 298 (407)
T ss_pred CCeeeeeeceeccCCCCCceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhh
Confidence 99999999999998777 58999999987776554443332110 00111111 22345557999999999999999
Q ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC
Q 017726 266 IFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV 341 (367)
Q Consensus 266 ~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~ 341 (367)
+.+.++.+++++...+.+++.+.++.. ++++.+|-.....+..+++..| ...++.+.|.++ ||..- ..
T Consensus 299 fa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp---~~~~V~qaLi~r-GVigD----~R 370 (407)
T COG3844 299 FADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHP---HGYQVMQALIDR-GVIGD----FR 370 (407)
T ss_pred hhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecC---cHHHHHHHHHHc-Ccccc----cc
Confidence 999999999999999999999999885 5788887555566778989886 567899999755 87532 33
Q ss_pred CCcEEEEeecC-CCCHHHHH
Q 017726 342 AGKVFRIGHLG-HLNEVMFN 360 (367)
Q Consensus 342 ~~~~iRi~~~~-~~~~~~~~ 360 (367)
.++.+|+++.. +.+..|..
T Consensus 371 ~P~vlRfgftPlY~~~~DVw 390 (407)
T COG3844 371 EPDVLRFGFTPLYVSFVDVW 390 (407)
T ss_pred CCCeeeecCccceechhHHH
Confidence 56789999876 66665554
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-24 Score=192.65 Aligned_cols=282 Identities=14% Similarity=0.109 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 119 (367)
....++++.++++.|. +.+++++||++|+..++.+++.+||+|+++.+.|.+.. +.......|+++..++.
T Consensus 53 pt~~~Le~~lA~leg~---e~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~---- 125 (388)
T PRK08861 53 PNRGLLEQTLSELESG---KGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ---- 125 (388)
T ss_pred chHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECC----
Confidence 5577999999999995 34899999999999999998999999999999877543 33444556788887763
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecC
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS 199 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~ 199 (367)
.|+++++++++ +++++|++++|+||||.+.|+++|.++|++ +|+++++|+++..+....+. ..++|++++|+
T Consensus 126 -~d~e~l~~~i~----~~tklV~lesP~NPtG~v~dl~~I~~la~~--~gi~vIvDea~~~~~~~~pl-~~GaDivv~S~ 197 (388)
T PRK08861 126 -SDAAALDAALA----KKPKLILLETPSNPLVRVVDIAELCQKAKA--VGALVAVDNTFLTPVLQKPL-ELGADFVIHST 197 (388)
T ss_pred -CCHHHHHHhcC----cCCeEEEEECCCCCCCcccCHHHHHHHHHH--cCCEEEEECCccccccCCCc-ccCCCEEEeec
Confidence 47899999987 467999999999999999999999999999 99999999999875443333 45899999999
Q ss_pred CCcccCCCc--ceeeeeC-HHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 200 QKALSLPTG--MGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 200 ~K~~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
||+++|+.+ .|+++++ +++.+++.... ...|. ..+....+.+...++ -+.-+.+
T Consensus 198 tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~--------------~~~G~----~~~p~~a~l~~rgl~-----Tl~lR~~ 254 (388)
T PRK08861 198 TKYINGHSDVIGGVLITKTKEHAEELAWWG--------------NCIGA----TGTPFDSYMTLRGIR-----TLGARMR 254 (388)
T ss_pred ceeccCCCcceeEEEEecHHHHHHHHHHHH--------------hccCC----CCChHHHHHHHhcCC-----CHHHHHH
Confidence 999998765 3777665 44544443211 01122 233321111111111 2667788
Q ss_pred HHHHHHHHHHHHHHHc-CCc-cccCC----Cc--------cCCCceEEEEcCCCC-CHHHHHHHHHhhCCeEEccC-CC-
Q 017726 277 RHRRLGKATRLAVEAW-GLK-NCTQK----EE--------WFSDTVTAVIVPSHI-NSSEIVRRAWQRYNLSLGLG-LN- 339 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~~-~~~~~----~~--------~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~v~~g-~~- 339 (367)
+..+++..+.+.|++. .+. +.-|. +. ...+.++.|.+..+. ....|++.|+ -..+.+.-| ..
T Consensus 255 ~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~l~-l~~~~~s~G~~~s 333 (388)
T PRK08861 255 VHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGSFEQLKVFVKALA-LFSLAESLGGVES 333 (388)
T ss_pred HHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCCCHHHHHHHHhcCC-cceEccCCCCCcc
Confidence 8999999999999987 332 22221 10 124568889983211 1223444442 222222222 11
Q ss_pred ----C-----------------CCCcEEEEeecCCCCHHHHHHhh
Q 017726 340 ----K-----------------VAGKVFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 340 ----~-----------------~~~~~iRi~~~~~~~~~~~~~~~ 363 (367)
+ ..++.||+| .|-++.+|+..++
T Consensus 334 l~~~p~~~~h~~~~~~~~~~~gi~~~liRls-vGlE~~~dli~Dl 377 (388)
T PRK08861 334 LICHPASMTHRAMGEEALAEAGVSQQLLRLS-VGLEDAQDLIADL 377 (388)
T ss_pred eeeCCCcccccccCHHHHHhcCCCCCeEEEE-eCcCCHHHHHHHH
Confidence 0 113469998 5777777776654
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-23 Score=192.44 Aligned_cols=312 Identities=15% Similarity=0.123 Sum_probs=208.9
Q ss_pred CCCCCCcccccCCCCCChHHHHHHHccCC-------CCCCCCc----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHH
Q 017726 4 MYAPGKNHLFVPGPVHIPDQVIRAMNRNN-------EDYRSPA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGA 72 (367)
Q Consensus 4 ~~~~~~~~~~~~~p~~~~~~v~~a~~~~~-------~~~~~~~----~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~a 72 (367)
-+.-+|.||..+..+++.+++.+++.++. .+..+.. ..+..+++++.+++++|.+. .+++ ++|+.+
T Consensus 7 ~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~--~l~~-~sG~~a 83 (370)
T PRK05937 7 IDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPE--AFIV-PSGYMA 83 (370)
T ss_pred EEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCe--EEEE-CChHHH
Confidence 35567999999999999999999999874 2222222 56789999999999999854 3455 556677
Q ss_pred HHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCC--CCccEEEEEecCCCc
Q 017726 73 WESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA--HTIKAICIVHNETAT 150 (367)
Q Consensus 73 l~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~--~~~~lv~~~~~~n~t 150 (367)
+..++..+..+||.|++....|.+.. .. .+........++ ..|++++++++++... +++++|++++++|++
T Consensus 84 ~~~~~~~~~~~~d~ii~d~~~H~sv~-~~-~~~~~~~~~~~~-----~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~ 156 (370)
T PRK05937 84 NLGLCAHLSSVTDYVLWDEQVHISVV-YS-LSVISGWHQSFR-----HNDLDHLESLLESCRQRSFGRIFIFVCSVYSFK 156 (370)
T ss_pred HHHHHHHhCCCCCEEEEEhhhhHHHH-HH-HHHcCCceEEec-----CCCHHHHHHHHHhhhccCCCcEEEEEecCCCCC
Confidence 76665555567777776666665543 22 222222222232 3589999999875210 235677889999999
Q ss_pred cccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccc----ccc---ceEEEecCCCcccCCCcceeeeeCHHHHHHhc
Q 017726 151 GVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMD----EWG---IDVALTGSQKALSLPTGMGIVCASPKALEASK 223 (367)
Q Consensus 151 G~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~----~~~---~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~ 223 (367)
|.+.|+++|.++|++ +|+++++|++|+.|.+..+.. .++ .++++.|++|.+ |+.|.|+++. ++..+.+.
T Consensus 157 G~i~pl~eI~~l~~~--~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~-g~~G~~vl~~-~~~~~~~~ 232 (370)
T PRK05937 157 GTLAPLEQIIALSKK--YHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKAL-GSMGAALLSS-SEVKQDLM 232 (370)
T ss_pred CCccCHHHHHHHHHH--cCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhh-hcCceEEEcC-HHHHHHHH
Confidence 999999999999999 999999999999876655431 122 236678889988 5788666544 55544433
Q ss_pred cCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCcc
Q 017726 224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEW 303 (367)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 303 (367)
.... ...+ ..+.+...++++.++++.+.+.+ +..+++.+++++++.+.|...+ +
T Consensus 233 ~~~~-~~~~---------------s~~~~~~~~~a~~aal~~l~~~~-~~~~~~l~~l~~~l~~~l~~~~-----~---- 286 (370)
T PRK05937 233 LNSP-PLRY---------------STGLPPHLLISIQVAYDFLSQEG-ELARKQLFRLKEYFAQKFSSAA-----P---- 286 (370)
T ss_pred HhCC-CCee---------------cCCCCHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhcCCCC-----C----
Confidence 2111 1111 11245556788889999998776 5567788888888887764321 1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 304 FSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
. ....+.++ +.+..++.+.|.+ .||.+.....+ ....+|++++.+++.+|++
T Consensus 287 -~-~~~~i~~~-~~~~~~~~~~L~~-~gi~v~~~~~~-~~~~iRis~~~~~t~edid 338 (370)
T PRK05937 287 -G-CVQPIFLP-GISEQELYSKLVE-TGIRVGVVCFP-TGPFLRVNLHAFNTEDEVD 338 (370)
T ss_pred -C-CEEEEEeC-ChhHHHHHHHHHH-CCeeEEeeCCC-CCCEEEEEcCCCCCHHHHH
Confidence 1 11234453 3456778888854 49988743333 2457999998777665543
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-25 Score=194.36 Aligned_cols=224 Identities=17% Similarity=0.189 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC-
Q 017726 40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG- 118 (367)
Q Consensus 40 ~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~- 118 (367)
+....+++++.+++++|.+. .+++++|+|.++..++.+++.+||+|++..+.|.+.. ..+...|++++.++.+.+
T Consensus 57 ~~g~i~~~~~~~A~~~ga~~--~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~--~~~~~~g~~~~~v~~~~~~ 132 (294)
T cd00615 57 PTGPIKEAQELAARAFGAKH--TFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVI--NGLVLSGAVPVYLKPERNP 132 (294)
T ss_pred CChHHHHHHHHHHHHhCCCC--EEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHH--HHHHHCCCEEEEecCccCc
Confidence 34668899999999999764 4566899999999999999999999999999888864 345668999888876532
Q ss_pred -----CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccC-----ceeeccc
Q 017726 119 -----EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSIC-----AIDFRMD 188 (367)
Q Consensus 119 -----~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~-----~~~~~~~ 188 (367)
+.+|+++++++++++ ++++++++++| |++|.+.|+++|.++|++ +|+++++|++|+.. ..+.+..
T Consensus 133 ~~~~~~~i~~~~l~~~l~~~--~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~--~g~~livDeA~~~~~~~~~~~~~~~~ 207 (294)
T cd00615 133 YYGIAGGIPPETFKKALIEH--PDAKAAVITNP-TYYGICYNLRKIVEEAHH--RGLPVLVDEAHGAHFRFHPILPSSAA 207 (294)
T ss_pred ccCcCCCCCHHHHHHHHHhC--CCceEEEEECC-CCCCEecCHHHHHHHHHh--cCCeEEEECcchhhhccCcccCcchh
Confidence 368999999999754 36899999987 789999999999999999 99999999998752 2233344
Q ss_pred cccceEEEecCCCcccCCCcceeeeeCHHHH--HHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHH
Q 017726 189 EWGIDVALTGSQKALSLPTGMGIVCASPKAL--EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLI 266 (367)
Q Consensus 189 ~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~ 266 (367)
..++|+++.|+||+++|+++.|++..+.+.. +++. .....++ ..+++...++++..+++.+
T Consensus 208 ~~~~div~~S~hK~l~g~~~~~~l~~~~~~~~~~~~~------------~~~~~~~-----ttsps~~~~asl~~a~~~~ 270 (294)
T cd00615 208 MAGADIVVQSTHKTLPALTQGSMIHVKGDLVNPDRVN------------EALNLHQ-----STSPSYLILASLDVARAMM 270 (294)
T ss_pred hcCCcEEEEchhcccchHhHHHHHHhCCCcCCHHHHH------------HHHHHHC-----CCCcHHHHHHHHHHHHHHH
Confidence 4589999999999998777667777765421 1111 1111222 3368899999999999998
Q ss_pred HHhChHHHHHHHHHHHHHHHHHHH
Q 017726 267 FEEGLENVIERHRRLGKATRLAVE 290 (367)
Q Consensus 267 ~~~g~~~~~~~~~~~~~~l~~~L~ 290 (367)
.++| ++..++..++.+++++.|+
T Consensus 271 ~~~g-~~~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 271 ALEG-KELVEELIELALYARQEIN 293 (294)
T ss_pred HHHh-HHHHHHHHHHHHHHHHHHh
Confidence 7776 4567788888888888875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-24 Score=194.25 Aligned_cols=280 Identities=15% Similarity=0.121 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 119 (367)
...+++++.+++++|.+. +++++||+.|+..++. ++.+||+|+++++.|.+.. +...++..|++++.++..
T Consensus 47 p~~~~le~~la~l~g~~~---~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~--- 119 (378)
T TIGR01329 47 PTRTALESLLAKLDKADR---AFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTT--- 119 (378)
T ss_pred hHHHHHHHHHHHHhCCCc---EEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCC---
Confidence 457899999999999843 5666778889987765 7899999999988877653 445667789999999864
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecC
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS 199 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~ 199 (367)
|+++++++++ +++|+|++++|+||+|.+.|+++|.++|++ +|+++++|++++.+....+. ..++|++++|+
T Consensus 120 --d~~~le~~i~----~~tklv~le~psnptg~v~dl~~I~~la~~--~g~~vivD~a~~~~~~~~~l-~~g~Di~v~S~ 190 (378)
T TIGR01329 120 --DLDKVKAALG----PKTKLVLLESPTNPLQKIVDIRKISEMAHA--QNALVVVDNTMMSPLLCNPL-ELGADIVYHSA 190 (378)
T ss_pred --CHHHHHHhcC----cCceEEEEECCCCCCCeeecHHHHHHHHHH--cCCEEEEECCCcccccCChh-hcCCcEEEEec
Confidence 7899999997 577999999999999999999999999999 99999999998765433233 45899999999
Q ss_pred CCcccCCCc--ceeeeeCHH-HHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 200 QKALSLPTG--MGIVCASPK-ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 200 ~K~~~g~~g--~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
+|+++|+.+ .|+++++++ +.+++..... ..|. ..+.. .+++-...-..+..+.+
T Consensus 191 tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~--------------~~G~----~~~~~-----~a~l~~~~l~tl~~R~e 247 (378)
T TIGR01329 191 TKFLAGHSDVMAGVLAVKGEEIAKKVYFLQN--------------STGS----GLAPF-----DCWLLLRGIKTLAIRIE 247 (378)
T ss_pred ceeccCCccceeEEEEeCcHHHHHHHHHHHH--------------hcCC----cCCHH-----HHHHHHccCCCHHHHHH
Confidence 999988766 688888554 4455543210 0121 12221 11221111123677788
Q ss_pred HHHHHHHHHHHHHHHc-CC-ccccCC----C--------ccCCCceEEEEcCCCCC-HHHHHHHHHhhCCeEEccCCC--
Q 017726 277 RHRRLGKATRLAVEAW-GL-KNCTQK----E--------EWFSDTVTAVIVPSHIN-SSEIVRRAWQRYNLSLGLGLN-- 339 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~-~~~~~~----~--------~~~~~~~~~~~~~~~~~-~~~l~~~L~~~~gv~v~~g~~-- 339 (367)
+..+++..+.+.|++. .+ .+.-|. + ....+.+++|.+ .+.+ ..++++.| +.+++.++.|-.
T Consensus 248 ~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~-~~~~~~~~~~~~L-~~~~i~~s~G~~~s 325 (378)
T TIGR01329 248 KQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFET-GSVALSKRLVEAT-KLFSITVSFGSVNS 325 (378)
T ss_pred HHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEE-CCHHHHHHHHHhC-cCcccccCCCCCCc
Confidence 8899999999999886 33 111111 0 012456899998 5554 66888888 566777775521
Q ss_pred ----C-----------------CCCcEEEEeecCCCCHHHHHHhh
Q 017726 340 ----K-----------------VAGKVFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 340 ----~-----------------~~~~~iRi~~~~~~~~~~~~~~~ 363 (367)
+ ..++.||+| .|-++.+|+..++
T Consensus 326 l~~~p~~~~~~~~~~~~~~~~gi~~~liR~s-vGlE~~~dl~~dl 369 (378)
T TIGR01329 326 LISMPCFMSHASIPAEVREERGLPEDLVRLS-VGIEDVDDLISDL 369 (378)
T ss_pred eeeCCCccccccCCHHHHHhcCCCCCeEEEE-eccCCHHHHHHHH
Confidence 1 013469998 5777777776654
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-24 Score=181.31 Aligned_cols=330 Identities=18% Similarity=0.185 Sum_probs=235.3
Q ss_pred CCCCcccccCCCCCChHHHHHHHccCC------------CCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCCh-hHH
Q 017726 6 APGKNHLFVPGPVHIPDQVIRAMNRNN------------EDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTG-TGA 72 (367)
Q Consensus 6 ~~~~~~~~~~~p~~~~~~v~~a~~~~~------------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~gg-t~a 72 (367)
...++++|++||..+|++|++.+.+.. .+||+..+.....+.++.+++++++|+++.|+|+.|| |+.
T Consensus 2 ~~~~~~nFsaGPa~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~q 81 (365)
T COG1932 2 SMPRVYNFSAGPAALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQ 81 (365)
T ss_pred CCCCCCCCCCCcccCCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCccHHH
Confidence 345678899999999999999988832 3477778889999999999999999999888887766 577
Q ss_pred HHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCC--ceEEEeCC---CCCCCCHHHHHHHHhccCCCCccEEEEEecC
Q 017726 73 WESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNF--NVDVVESD---WGEGAKLDVLASKLAADTAHTIKAICIVHNE 147 (367)
Q Consensus 73 l~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~--~~~~v~~~---~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~ 147 (367)
+.++..+++.++..- ..+.++++....+.++..+. ++..+... ...-++++... +. ++...|.+|+.+
T Consensus 82 f~~~p~nLl~~~~~~-yv~~g~Ws~~a~~eA~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~----~~~ayv~~~~Ne 154 (365)
T COG1932 82 FAMAPMNLLGKRGTD-YVDTGAWSEFAIKEAKKVGKQPKLIDARIEEAGYGSIPDLSKWD--FS----DNDAYVHFCWNE 154 (365)
T ss_pred HHHHHHhhhcccCce-eEeeeehhHhHHHHHHHhcccccccccceeccCccCCCChhhcc--cC----CCccEEEEecCC
Confidence 888888887665430 23345666543355566653 22222211 12223444332 23 224679999999
Q ss_pred CCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCC
Q 017726 148 TATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS 227 (367)
Q Consensus 148 n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~ 227 (367)
+.+|+..+-. .....+.++++|.++..++.++|+.+ .|++.++.+|.+ ||.|++++++++++++++.....
T Consensus 155 Ti~Gv~v~~~------p~~~~~~~~v~D~SS~ilsr~iDvsk--~dviyagaQKnl-GpaGltvvIvr~~~l~r~~~~~~ 225 (365)
T COG1932 155 TISGVEVPEL------PDIGSDGLLVADASSAILSRPIDVSK--YDVIYAGAQKNL-GPAGLTVVIVRPDLLERAESYTL 225 (365)
T ss_pred cccceEccCC------CCCCCCceEEEecccHHhcCCCChhH--cceEEEehhhcc-CccceEEEEEcHHHHhcccccCC
Confidence 9999888721 11113488999999999999999984 799999999999 69999999999999999876532
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCC
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSD 306 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 306 (367)
++ .+++.. ....+ ...+||++..+..+..+++|+...| ++.+.++.+++++.|++.+++.++....-.+..++.
T Consensus 226 P~-if~y~~---~~~~~-s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s~fy~~~v~~~~RS~ 300 (365)
T COG1932 226 PS-IFDYLT---HADNG-SMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSDFYRNLVAKANRSR 300 (365)
T ss_pred ch-Hhhchh---hhccC-CccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCccccccchhhccc
Confidence 21 122222 11222 2378999999999999999999887 999999999999999999999864433323456888
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 307 TVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
..++|.+.+..=.+.|.+.+.++ |+...-| +.. .+.+|+++++..+-++.
T Consensus 301 mnV~f~~~~~~ld~~fv~eae~~-gl~~lkG-hr~-vgGmRasiynA~~~e~v 350 (365)
T COG1932 301 MNVTFTLVDAELDKGFVAEAEAA-GLIYLKG-HRS-VGGLRASIYNAVPLEDV 350 (365)
T ss_pred eeEEEEcCcHHHHHHHHHHHHHc-CCceecc-ccC-CCceeeeeecCCCHHHH
Confidence 88889885332234566666444 7666656 222 23399999998776554
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-24 Score=195.54 Aligned_cols=315 Identities=12% Similarity=0.007 Sum_probs=196.7
Q ss_pred ccCCCCCChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhc-----CCCC--ceEEecCChhHHHHHHHHccCCCC
Q 017726 13 FVPGPVHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFK-----TTSG--TPFLIPTTGTGAWESALTNTLSPG 84 (367)
Q Consensus 13 ~~~~p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~-----~~~~--~~v~~~~ggt~al~~~~~~~~~~g 84 (367)
.-++.+.+-+.+.+++.+.... ..+|....+..++|+.+++++. .... ++|++|+|+++++.+++.+++++|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~g 93 (388)
T PRK08637 14 TEKGGPMYLSSLQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVDQG 93 (388)
T ss_pred ecCCCcchHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcCCC
Confidence 4455556666666666653222 3345445667789999888763 2222 458999999999999999999999
Q ss_pred CeEEEEeCCcchHHHHHHHHHhCCceEEEeCC-CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHH---HH
Q 017726 85 DRIISFLIGQFSLLWIDQQQRLNFNVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSK---VR 160 (367)
Q Consensus 85 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~---i~ 160 (367)
|.|++++|.|+.+.. .+....|.+++.+++. +++.+|+++++++++....+..+++++++||||||.+++.++ |.
T Consensus 94 d~Vlv~~P~y~~~~~-~~~~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~ 172 (388)
T PRK08637 94 DTVLLPDHNWGNYKL-TFNTRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIV 172 (388)
T ss_pred CEEEEcCCCCccHHH-HHHHhcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 999999997766531 2234579999999984 456789999999887211024467888999999999998555 55
Q ss_pred HHHHh---cCCCcEEEEeeeeccCcee----ec----c-ccccce--EEEecCCCcccCCCc--ceeeeeC------HHH
Q 017726 161 KLLDE---YRHPALFLVDGVSSICAID----FR----M-DEWGID--VALTGSQKALSLPTG--MGIVCAS------PKA 218 (367)
Q Consensus 161 ~~~~~---~~~~~~vi~D~~~~~~~~~----~~----~-~~~~~d--~~~~s~~K~~~g~~g--~g~~~~~------~~~ 218 (367)
++|++ ..++++||+|++|...... .+ . ...+.. +.+.|++|.+. .+| +|+++.. +++
T Consensus 173 ~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~-~pGlRlG~~~~~~~~~~~~~l 251 (388)
T PRK08637 173 EAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEF-VWGFRVGFITFGTKAGSSQTV 251 (388)
T ss_pred HHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCC-CcccceEEEEEccccCCcHHH
Confidence 55442 1279999999998643211 01 0 111122 33458999764 444 6999854 566
Q ss_pred HHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH-HhChHHHHHHHHHHHHHHHHHHHHc----C
Q 017726 219 LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-EEGLENVIERHRRLGKATRLAVEAW----G 293 (367)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~-~~g~~~~~~~~~~~~~~l~~~L~~~----g 293 (367)
++.+..... .... .. .+..+.....++..++..-. ...+++.++.++++.+.+.+.|++. +
T Consensus 252 ~~~~~~~~~-----------~~~~-~~--~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~ 317 (388)
T PRK08637 252 KEALEKKVK-----------GLIR-SN--ISNGPHPSQSAVLRALNSPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDA 317 (388)
T ss_pred HHHHHHHHH-----------HHhh-cc--cCCCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 665542100 0000 00 11234433334443432100 0113444555677777777888765 3
Q ss_pred CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC
Q 017726 294 LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352 (367)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~ 352 (367)
+.+..+ .+++++|++++ +.+..+++++|.+++||.+... .++++||++..
T Consensus 318 ~~~~~~----~~g~~~~~~l~-~~~~~~l~~~l~~~~gv~~~~~----~~~~iRi~~~~ 367 (388)
T PRK08637 318 WQAYPF----NSGYFMCLKLK-GVDAEELRVHLLEKYGIGTIAL----NETDLRIAFSC 367 (388)
T ss_pred cccccc----cceEEEEecCC-hHHHHHHHHHHhhhcceEEEec----cCCceEEEeec
Confidence 555554 46667888874 4567889999976779988642 34579999754
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.2e-24 Score=193.25 Aligned_cols=213 Identities=20% Similarity=0.154 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 119 (367)
....++++.++++.|.+. . ++++||++|+.+++.+++.+||+|+++.+.|.+.. +...++..|+++..++.
T Consensus 60 p~~~~Le~~lA~l~g~~~--~-v~~~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~---- 132 (405)
T PRK08776 60 PTRDLLGEALAELEGGAG--G-VITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADL---- 132 (405)
T ss_pred hHHHHHHHHHHHHhCCCc--e-EEEcCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECC----
Confidence 456789999999999743 3 56677899999999999999999999999877643 44556667888888865
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecC
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS 199 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~ 199 (367)
.|+++++++++ +++|+|++++|+||||.+.|+++|.++|++ +|+++++|++|..+....+. ..++|++++|+
T Consensus 133 -~d~~~l~~~i~----~~tklV~l~~P~NPtG~v~dl~~I~~la~~--~gi~vIvD~a~a~~~~~~pl-~~gaDivv~S~ 204 (405)
T PRK08776 133 -TDPRSLADALA----QSPKLVLIETPSNPLLRITDLRFVIEAAHK--VGALTVVDNTFLSPALQKPL-EFGADLVLHST 204 (405)
T ss_pred -CCHHHHHHhcC----cCCeEEEEECCCCCCCccCCHHHHHHHHHH--cCCEEEEECCCcccccCCcc-cccCCEEEecC
Confidence 27899999987 467999999999999999999999999999 99999999999765432222 35789999999
Q ss_pred CCcccCCCc--ceeeee-CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 200 QKALSLPTG--MGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 200 ~K~~~g~~g--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
+|+++|+.+ .|+++. ++++.+++..... ..|. .++......+...+++ ++.+.+
T Consensus 205 tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~--------------~~g~----~~s~~~a~l~~~gl~t-----l~~r~~ 261 (405)
T PRK08776 205 TKYINGHSDVVGGAVVARDAELHQQLVWWAN--------------ALGL----TGSPFDAFLTLRGLRT-----LDARLR 261 (405)
T ss_pred ceeecCCCCceEEEEEeCCHHHHHHHHHHHH--------------hcCC----CCCHHHHHHHHhhhCc-----HHHHHH
Confidence 999987754 376666 4566555542110 0121 2444333333333433 567788
Q ss_pred HHHHHHHHHHHHHHHc
Q 017726 277 RHRRLGKATRLAVEAW 292 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~ 292 (367)
+..+++..+.+.|++.
T Consensus 262 ~~~~na~~la~~L~~~ 277 (405)
T PRK08776 262 VHQENADAIAALLDGH 277 (405)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 8999999999999986
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-24 Score=196.35 Aligned_cols=310 Identities=15% Similarity=0.153 Sum_probs=229.0
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCC-----CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC-
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNED-----YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL- 81 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~- 81 (367)
.+.+....+++.+++...+.+...... ..++.......++..+++++++.+..-.-.+|+|||+|+.+++.+..
T Consensus 62 p~~~~~~~~~~~~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~ 141 (460)
T COG0076 62 PRANLAGFCPTRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARE 141 (460)
T ss_pred cceEEEccCCCCCHHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHH
Confidence 345667778888888888887775433 22445567788899999999999755457999999999998775421
Q ss_pred -------C-C-----CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecC
Q 017726 82 -------S-P-----GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNE 147 (367)
Q Consensus 82 -------~-~-----gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~ 147 (367)
. . ...|+++...|+| +.+.++.+|++++.+++.. +.++|+++++++|++++... +|+.+.+.
T Consensus 142 ~~~~~~~~~~~~~~~~P~ii~s~~aH~s--~~Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g--~vV~~aGt 217 (460)
T COG0076 142 RWRKRALAESGKPGGKPNIVCSETAHFS--FEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGG--VVVGTAGT 217 (460)
T ss_pred HHHHHhhhcccccCCCCeEEecCcchhH--HHHHHHHhCCCceeEEeccCccccCHHHHHHHHHhhccCc--eEEEEecC
Confidence 0 0 1158888888887 4588999999999999988 68999999999999865211 48888999
Q ss_pred CCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceee-------ccccccceEEEecCCCcccCCCcceeeeeCHH-HH
Q 017726 148 TATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF-------RMDEWGIDVALTGSQKALSLPTGMGIVCASPK-AL 219 (367)
Q Consensus 148 n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~-------~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~-~~ 219 (367)
+++|.+.|+++|.++|++ ++++++||+|++.+.+++ +....++|.++.++||++..|.|+|+++.+++ ..
T Consensus 218 T~~G~iDdi~~ia~ia~~--~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l 295 (460)
T COG0076 218 TDTGSIDDIEELADIAEE--YGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEAL 295 (460)
T ss_pred CCCCccCCHHHHHHHHHH--cCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEEECHHHh
Confidence 999999999999999999 999999999998776643 22333789999999999999999999998887 34
Q ss_pred HHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcC-Ccccc
Q 017726 220 EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG-LKNCT 298 (367)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~ 298 (367)
++......+ +..... ..++ ...++.+....+++++.+..+..+|++++.+++.++++++.+.|++.| +++..
T Consensus 296 ~~~~~~~~~--yl~~~~-~~~~----ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~ 368 (460)
T COG0076 296 RRILIFADY--YLPGGG-IPNF----TILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVN 368 (460)
T ss_pred hhhhhcccc--cCCCCC-cCce----eEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeec
Confidence 444322111 110000 0000 011234444678899999999999999999999999999999999995 88887
Q ss_pred CCCccCCCceEEEEcCCCCC-HHHHHHHHHhhCCeEEc
Q 017726 299 QKEEWFSDTVTAVIVPSHIN-SSEIVRRAWQRYNLSLG 335 (367)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~L~~~~gv~v~ 335 (367)
+ ...++++|+.++..+ ..+..+++.+ .|..+.
T Consensus 369 ~----p~l~~V~fr~~~~~~~~~~~~~~~~~-~gw~v~ 401 (460)
T COG0076 369 E----PELPIVAFRLKDDEDTLADLSERLDR-RGWQVP 401 (460)
T ss_pred C----CccceEEEEcCCcccchhchHHHHHh-cCceee
Confidence 5 245688999854433 4455555543 355554
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-24 Score=194.65 Aligned_cols=314 Identities=12% Similarity=0.066 Sum_probs=210.0
Q ss_pred CChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH
Q 017726 19 HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL 98 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~ 98 (367)
.+.++.++++..... .|.......++++.+++++|.+. +++|+||+.|+.+++.+++.|||.| ++++.+.++.
T Consensus 33 ams~~~~~a~~~gd~---~Y~~~~g~~~Leeaia~~~g~~~---vv~t~~Gt~Al~la~~al~~pGD~V-~~~~~f~~~~ 105 (431)
T cd00617 33 AMSDYQWAAMMLGDE---AYAGSKSFYDLEDAVQDLFGFKH---IIPTHQGRGAENILFSILLKPGRTV-PSNMHFDTTR 105 (431)
T ss_pred HHHHHHHHHHHhCCC---ccCCCCCHHHHHHHHHHHHCCCe---EEEcCCHHHHHHHHHHHhCCCCCEE-ccCCcccchH
Confidence 456667777764322 23333556799999999999864 8999999999999999999999977 4555333332
Q ss_pred HHHHHHHhCCceEEEeCCCC----------CCCCHHHHHHHHhccCCCCccEEEEEecCCCc-ccccc---HHHHHHHHH
Q 017726 99 WIDQQQRLNFNVDVVESDWG----------EGAKLDVLASKLAADTAHTIKAICIVHNETAT-GVTNN---LSKVRKLLD 164 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~~----------~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~t-G~~~~---~~~i~~~~~ 164 (367)
...+..|.+++.+++++. +.+|++++++++++++.+++++|+++.|+||+ |.+.+ +++|.++|+
T Consensus 106 --~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~ 183 (431)
T cd00617 106 --GHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAH 183 (431)
T ss_pred --HHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHH
Confidence 456778999999988632 34899999999987532458999999999998 88886 457899999
Q ss_pred hcCCCcEEEEeeeeccC-----------ceeecccc------ccceEEEecCCCcccCCCcceeeeeCH-HHHHHhccCC
Q 017726 165 EYRHPALFLVDGVSSIC-----------AIDFRMDE------WGIDVALTGSQKALSLPTGMGIVCASP-KALEASKTAK 226 (367)
Q Consensus 165 ~~~~~~~vi~D~~~~~~-----------~~~~~~~~------~~~d~~~~s~~K~~~g~~g~g~~~~~~-~~~~~~~~~~ 226 (367)
+ +|++||.|+++... ....+..+ ...|.+++|++|.+.++.| |++++++ ++++++....
T Consensus 184 ~--~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~G-G~i~~~d~~l~~~~~~~~ 260 (431)
T cd00617 184 K--YGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIG-GFLALRDDELYEEARQRV 260 (431)
T ss_pred H--cCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCccc-eEEEeCcHHHHHHHHHhc
Confidence 9 99999999996532 11111111 1468899999998766665 8899886 5877766321
Q ss_pred CCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCC
Q 017726 227 SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSD 306 (367)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 306 (367)
.. . + +..+.+..+...+.++..++....+ .+.+.++ .+.++++.+.|++.|+++..| .++
T Consensus 261 ~~---~---------~-~~~~~gG~~~r~~~A~A~gL~e~~~--~~~l~~~-~~~r~~l~~~L~~~G~~v~~P----~Gg 320 (431)
T cd00617 261 VL---Y---------E-GFVTYGGMAGRDMEALAQGLREAVE--EDYLRHR-VEQVRYLGDRLDEAGVPIVEP----AGG 320 (431)
T ss_pred cc---c---------C-CccccccccHHHHHHHHHHHHhccc--HHHHHHH-HHHHHHHHHHHHHCCCCccCC----Ccc
Confidence 10 0 0 1001122444444455445443211 2233333 345599999999999999887 466
Q ss_pred ceEEEEcCC--------CCCHHHHHHHHHhhCCeEEcc-CC-----CCCC-------CcEEEEeecC---CCCHHHHHHh
Q 017726 307 TVTAVIVPS--------HINSSEIVRRAWQRYNLSLGL-GL-----NKVA-------GKVFRIGHLG---HLNEVMFNFQ 362 (367)
Q Consensus 307 ~~~~~~~~~--------~~~~~~l~~~L~~~~gv~v~~-g~-----~~~~-------~~~iRi~~~~---~~~~~~~~~~ 362 (367)
+.++++.+. ..++.+|+.+|.++.||.+.. |. .+.. -..+|+++.= +.+..|...+
T Consensus 321 h~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~ 400 (431)
T cd00617 321 HAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAA 400 (431)
T ss_pred eEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHH
Confidence 778888742 124778998898898998642 32 2221 1459998632 3445554444
Q ss_pred hh
Q 017726 363 LL 364 (367)
Q Consensus 363 ~l 364 (367)
.|
T Consensus 401 ~~ 402 (431)
T cd00617 401 AV 402 (431)
T ss_pred HH
Confidence 44
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-23 Score=192.41 Aligned_cols=284 Identities=15% Similarity=0.142 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.+...++++.+++++|.+. +++++||++|+..++.+++.+||+|+++++.|.+.. +...+...|++++.++.+
T Consensus 60 ~p~~~~le~~la~l~g~~~---~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-- 134 (390)
T PRK08133 60 NPTVTMFQERLAALEGAEA---CVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLT-- 134 (390)
T ss_pred ChHHHHHHHHHHHHhCCCc---EEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCC--
Confidence 4567899999999999754 678899999999999888999999999988776654 445567789999999864
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ +++|+|++++|+||+|.+.|+++|.++|++ +|+++++|++++.+....+. ..++|++++|
T Consensus 135 ---d~~~l~~~i~----~~tklV~ie~p~NptG~v~dl~~I~~la~~--~gi~livD~t~~~~~~~~pl-~~g~Divv~S 204 (390)
T PRK08133 135 ---DLDAWRAAVR----PNTKLFFLETPSNPLTELADIAALAEIAHA--AGALLVVDNCFCTPALQQPL-KLGADVVIHS 204 (390)
T ss_pred ---CHHHHHHhcC----cCCeEEEEECCCCCCCCcCCHHHHHHHHHH--cCCEEEEECCCcccccCCch-hhCCcEEEee
Confidence 7899999987 467999999999999999999999999999 99999999998655432222 3478999999
Q ss_pred CCCcccCCCc-c-eeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 199 SQKALSLPTG-M-GIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 199 ~~K~~~g~~g-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
++|+++|+.. + |+++.+++.++++.... + ..|. .++.. ..+.++.-+. .+..+.+
T Consensus 205 ~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~-------------~-~~g~----~~~~~---~a~~~l~gl~--tl~~R~~ 261 (390)
T PRK08133 205 ATKYLDGQGRVLGGAVVGSKELMEEVFGFL-------------R-TAGP----TLSPF---NAWVFLKGLE--TLSLRME 261 (390)
T ss_pred cceeecCCcceEeEEEEcCHHHHHHHHHHH-------------H-HhCC----CCCHH---HHHHHHcccc--hHHHHHH
Confidence 9999975432 3 77888888766554210 0 0121 12221 1122222221 2666777
Q ss_pred HHHHHHHHHHHHHHHc-CCccc-cCC----C--------ccCCCceEEEEcCCCC-CHHHHHHHHHhhCCeEEccC-CC-
Q 017726 277 RHRRLGKATRLAVEAW-GLKNC-TQK----E--------EWFSDTVTAVIVPSHI-NSSEIVRRAWQRYNLSLGLG-LN- 339 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~~~~-~~~----~--------~~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~v~~g-~~- 339 (367)
+..+++..+.+.|++. ++..+ -|. + ....+.++.|.+..+. ....|++.|+ -..+.+.-| ..
T Consensus 262 ~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~f~~~l~-l~~~~~slG~~~s 340 (390)
T PRK08133 262 AHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGGREAAWRVIDATR-LISITANLGDTKT 340 (390)
T ss_pred HHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCHHHHHHHHHhCC-cceEeccCCCcce
Confidence 8889999999999987 54322 121 0 0123568889983221 1234444442 222222222 10
Q ss_pred ----C-----------------CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 340 ----K-----------------VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 340 ----~-----------------~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
+ ..++.||+| .|-++.+|++.++-
T Consensus 341 l~~~p~~~~~~~~~~~~~~~~gi~~~liR~s-vGlE~~~dl~~dl~ 385 (390)
T PRK08133 341 TITHPATTTHGRLSPEARAAAGITEGLIRVA-VGLEDVADIKADLA 385 (390)
T ss_pred eeecCCCCCcccCCHHHHHhcCCCCCeEEEE-eCcCCHHHHHHHHH
Confidence 0 013469998 57777787776653
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-23 Score=188.98 Aligned_cols=325 Identities=11% Similarity=0.034 Sum_probs=212.9
Q ss_pred CCCCcccccCCCCCChHHHHHHHccCCCCCC----CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC
Q 017726 6 APGKNHLFVPGPVHIPDQVIRAMNRNNEDYR----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL 81 (367)
Q Consensus 6 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~ 81 (367)
..++.|+-....+.+-+.+.+++.++..+.. .|.......++++.+++++|.++ .+++ ++|+.+...++.+++
T Consensus 3 f~s~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~e~--al~~-~sG~~a~~~~i~~l~ 79 (392)
T PLN03227 3 FATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTES--AILY-SDGASTTSSTVAAFA 79 (392)
T ss_pred CcCcCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCCCc--EEEe-cCcHHHHHHHHHHhC
Confidence 4567777777777788888888888654321 23445688999999999999864 4555 556666668888889
Q ss_pred CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcc-------CCCCccEEEEEecCCCccccc
Q 017726 82 SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAAD-------TAHTIKAICIVHNETATGVTN 154 (367)
Q Consensus 82 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~-------~~~~~~lv~~~~~~n~tG~~~ 154 (367)
++||.|++.++.|.+.. ..+...+.+++.++.+.. -+++.+.+.+... ..+++++|++.++.|++|.+.
T Consensus 80 ~~GD~Vl~~~~~h~s~~--~~~~l~~~~~~~~~~~d~--~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~ 155 (392)
T PLN03227 80 KRGDLLVVDRGVNEALL--VGVSLSRANVRWFRHNDM--KDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLA 155 (392)
T ss_pred CCCCEEEEeccccHHHH--HHHHHcCCeEEEeCCCCH--HHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCccc
Confidence 99999999999887754 223555677776665411 1233333344321 113679999999999999999
Q ss_pred cHHHHHHHHHhcCCCcEEEEeeeeccCcee---------eccc-cccceEEEecCCCcccCCCcceeeeeCHHHHHHhcc
Q 017726 155 NLSKVRKLLDEYRHPALFLVDGVSSICAID---------FRMD-EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKT 224 (367)
Q Consensus 155 ~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~---------~~~~-~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~ 224 (367)
|++++.++|++ +|+++++|++|+++... +... ..++|+++.|.+|.+ |+.| |++++++++++.+..
T Consensus 156 ~l~~i~~l~~~--~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~-g~~g-g~v~~~~~~~~~~~~ 231 (392)
T PLN03227 156 PLKELVALKEE--FHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAF-GSVG-GMTVGSEEVVDHQRL 231 (392)
T ss_pred CHHHHHHHHHH--cCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhh-hccC-cEEecCHHHHHHHHH
Confidence 99999999999 99999999999855321 0111 236799999999987 4665 888889888765542
Q ss_pred CCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCc--
Q 017726 225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEE-- 302 (367)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-- 302 (367)
.... .++ ..+.+...+.+..+++....+ .+++.++.+++.+++++.|++.+++.+..-..
T Consensus 232 ~~~~---------------~~~-~~~~~p~~~~aa~~al~~~~~--~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~ 293 (392)
T PLN03227 232 SGSG---------------YCF-SASAPPFLAKADATATAGELA--GPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRL 293 (392)
T ss_pred hCcC---------------ccc-cCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhcCCcccccccccc
Confidence 1110 111 112223223333344444333 24677889999999999998765442221000
Q ss_pred ----cCCCceEEEEcCCCCC---------HHHHHHHHHhhCCeEEcc-CC------CCCCCcEEEEeecCCCCHHHHH
Q 017726 303 ----WFSDTVTAVIVPSHIN---------SSEIVRRAWQRYNLSLGL-GL------NKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 303 ----~~~~~~~~~~~~~~~~---------~~~l~~~L~~~~gv~v~~-g~------~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
...+.++.+.+.+... ..++++.+.++ |+.+.+ +. ...++..+|++.+..++++|+.
T Consensus 294 ~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~ 370 (392)
T PLN03227 294 VITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSE-GVAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDID 370 (392)
T ss_pred ccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHC-CCEEEecccccCCcCCCCCCceEEEEecCCCCHHHHH
Confidence 0124466677643211 13788888655 998863 21 1233567999999988877665
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-23 Score=188.32 Aligned_cols=282 Identities=12% Similarity=0.147 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH-HH-HHHHHhCCceEEEeCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL-WI-DQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~-~~-~~~~~~g~~~~~v~~~~~~ 119 (367)
....++++.++++.|.+. +++++||++|+..++.+++++||+|+++++.|++.. +. ..++..|+++..++..
T Consensus 50 Pt~~~lE~~lA~l~g~~~---~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~--- 123 (377)
T TIGR01324 50 LTHFALQDAMCELEGGAG---CYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPL--- 123 (377)
T ss_pred ccHHHHHHHHHHHhCCCc---EEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCC---
Confidence 556789999999999653 778899999999999999999999999999876653 22 3456678888777543
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecC
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS 199 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~ 199 (367)
+.++++++++ +++|+|++++|+||+|.+.|+++|.++|++ +|+++++|++|+.+.. ....+.++|++++|.
T Consensus 124 --~~e~l~~~i~----~~tklV~lesp~Np~g~~~dl~~I~~la~~--~g~~livD~t~a~g~~-~~pl~~gaDivv~S~ 194 (377)
T TIGR01324 124 --IGEDIATLIQ----PNTKVLFLEAPSSITFEIQDIPAIAKAARN--PGIVIMIDNTWAAGLL-FKPLEHGVDISIQAG 194 (377)
T ss_pred --CHHHHHHhcC----CCceEEEEECCCCCCCcHHHHHHHHHHHHH--cCCEEEEECCCccccc-cCccccCceEEEecC
Confidence 2378888887 577999999999999999999999999999 9999999999998765 334456899999999
Q ss_pred CCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHH
Q 017726 200 QKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIER 277 (367)
Q Consensus 200 ~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~ 277 (367)
+|+++|+.+ .|+++.+++..+++... . ...|. +.+......+..+++. +..++++
T Consensus 195 tK~l~G~~d~~gG~v~~~~~~~~~l~~~-------------~-~~~G~----~l~p~~a~~~~rgl~t-----l~~R~~~ 251 (377)
T TIGR01324 195 TKYLVGHSDIMIGTVVANARTWDQLREH-------------S-YLMGQ----MVDADDAYTTLRGLRT-----LGVRLKQ 251 (377)
T ss_pred ceeccCCCCceEEEEEeCHHHHHHHHHH-------------H-HHhCC----CCCHHHHHHHHhhhhh-----HHHHHHH
Confidence 999988765 48888988876655421 0 01122 2333322222223332 4556788
Q ss_pred HHHHHHHHHHHHHHc-CC-ccccCC----Cc--------cCCCceEEEEcCC-CC-CHHHHHHHHHhhCCeEEccCCC--
Q 017726 278 HRRLGKATRLAVEAW-GL-KNCTQK----EE--------WFSDTVTAVIVPS-HI-NSSEIVRRAWQRYNLSLGLGLN-- 339 (367)
Q Consensus 278 ~~~~~~~l~~~L~~~-g~-~~~~~~----~~--------~~~~~~~~~~~~~-~~-~~~~l~~~L~~~~gv~v~~g~~-- 339 (367)
.++++..+.+.|++. .+ .++-|. +. ...+.++.|.+.. +. ...+|++.|+ ..++.+.-|-.
T Consensus 252 ~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~l~-~~~~~~slG~~~s 330 (377)
T TIGR01324 252 HQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQKQVHAFLDHLQ-LFGLGYSWGGYES 330 (377)
T ss_pred HHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCC-cceEeccCCCccc
Confidence 899999999999986 33 233221 10 1246788999832 11 2445666663 33444433310
Q ss_pred ----C-------------CCCcEEEEeecCCCCHHHHHHhh
Q 017726 340 ----K-------------VAGKVFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 340 ----~-------------~~~~~iRi~~~~~~~~~~~~~~~ 363 (367)
+ ..+..+|+| .|-++.+|+..++
T Consensus 331 l~~~~~~~~~~~~~~~~~~~~~liR~s-vGlE~~~dl~~dl 370 (377)
T TIGR01324 331 LALCNQPELGHRPNIKRNLEGPLIRVH-IGLENVDDLKADL 370 (377)
T ss_pred eeecCCCCCCHHHHHhccCCCCEEEEE-eCCCCHHHHHHHH
Confidence 0 123469998 5777777776654
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-24 Score=195.27 Aligned_cols=287 Identities=14% Similarity=0.152 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.....++++.+++++|.+. +++++||++|+..++.+++.+||+|+++.+.|.+.. +...++..|++++.++..
T Consensus 63 ~p~~~~Le~~iA~~~g~~~---~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-- 137 (400)
T PRK06234 63 NPTSTEVENKLALLEGGEA---AVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTS-- 137 (400)
T ss_pred CccHHHHHHHHHHHhCCCc---EEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCC--
Confidence 3557799999999999643 677899999999989888999999999998776654 345567789999998764
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ +++|+|++++|+||||.+.|+++|.++|+++.+|+++++|++++.+....+. ..++|++++|
T Consensus 138 ---d~e~l~~~i~----~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~l-~~g~Divv~S 209 (400)
T PRK06234 138 ---NLEEVRNALK----ANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPL-QLGADVVVHS 209 (400)
T ss_pred ---CHHHHHHHhc----cCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCch-hhCCcEEEee
Confidence 7999999997 4679999999999999999999999999993239999999999876543222 3478999999
Q ss_pred CCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 199 SQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
++|+++|+.. .|++++++++++++..... +...|. ..+....+.+...++ .++.+.+
T Consensus 210 ~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~------------~~~~g~----~l~p~~a~l~~~~l~-----tl~~r~~ 268 (400)
T PRK06234 210 ATKYLNGHGDVIAGFVVGKEEFINQVKLFGI------------KDMTGS----VIGPFEAFLIIRGMK-----TLQIRME 268 (400)
T ss_pred ccccccCCCCceeEEEEecHHHHHHHHHHHH------------HHhcCC----CCCHHHHHHHHhccC-----cHHHHHH
Confidence 9999975432 4999999988777642110 000011 233322111111222 2556777
Q ss_pred HHHHHHHHHHHHHHHc-CCc-cccCC----Cc--------cCCCceEEEEcCCCC-CHHHHHHHHHhhCCeEEccCC-C-
Q 017726 277 RHRRLGKATRLAVEAW-GLK-NCTQK----EE--------WFSDTVTAVIVPSHI-NSSEIVRRAWQRYNLSLGLGL-N- 339 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~~-~~~~~----~~--------~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~v~~g~-~- 339 (367)
+..+++..+.+.|++. .+. ++-|. +. ...+.++.|.+..+. ...+|++.|. -.++.+.-|- .
T Consensus 269 ~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~~~~~~f~~~l~-~~~~~~s~G~~~s 347 (400)
T PRK06234 269 KHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGVEEGKVVMNNVK-LATLAVSLGDAET 347 (400)
T ss_pred HHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhCC-cceEeccCCCCCc
Confidence 8889999999999886 331 22221 10 124668889984231 2345666663 3344443331 1
Q ss_pred ----C-----------------CCCcEEEEeecCCCCHHHHHHhh
Q 017726 340 ----K-----------------VAGKVFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 340 ----~-----------------~~~~~iRi~~~~~~~~~~~~~~~ 363 (367)
+ ..++.+|+| .|-++.+|+..++
T Consensus 348 l~~~p~~~~~~~~~~~~~~~~gi~~~l~R~s-vGlE~~~dl~~dl 391 (400)
T PRK06234 348 LIQHPASMTHSPYTAEERKEAGISDGLVRLS-VGLEDVDDIIADL 391 (400)
T ss_pred eecCCccCCCCCCCHHHHHhcCCCCCeEEEE-eCCCCHHHHHHHH
Confidence 1 113569998 5777777776654
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-24 Score=195.80 Aligned_cols=251 Identities=14% Similarity=0.101 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHH-HHHHhCCceEEEeCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WID-QQQRLNFNVDVVESDW 117 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~-~~~~~g~~~~~v~~~~ 117 (367)
....+++++.+++++|.+. +++++||++|+..++.+++++||+|++..+.|.+.. +.. ..+..|++++.++..
T Consensus 75 ~Pt~~~LE~~lA~l~g~~~---~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~- 150 (418)
T PLN02242 75 NPTVLNLGRQMAALEGTEA---AYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDIT- 150 (418)
T ss_pred ChhHHHHHHHHHHHhCCCe---EEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCCC-
Confidence 4678899999999999865 567899999999999999999999999988766553 111 224478887777653
Q ss_pred CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEe
Q 017726 118 GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALT 197 (367)
Q Consensus 118 ~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~ 197 (367)
|++++++++++ .++|+|++++|+||||.+.|+++|.++|++ +|++|++|++++.+. ++....++|+++.
T Consensus 151 ----d~e~l~~~i~~---~~tklV~lesp~NPtG~v~dl~~I~~la~~--~gi~livDea~~~~~--~~~~~~g~divv~ 219 (418)
T PLN02242 151 ----DLEAVKKAVVP---GKTKVLYFESISNPTLTVADIPELARIAHE--KGVTVVVDNTFAPMV--LSPARLGADVVVH 219 (418)
T ss_pred ----CHHHHHHhcCc---CCCEEEEEecCCCCCCcccCHHHHHHHHHH--hCCEEEEECCCCccC--CCHHHcCCcEEEE
Confidence 79999999974 147999999999999999999999999999 999999999997443 3434457899999
Q ss_pred cCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHH
Q 017726 198 GSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275 (367)
Q Consensus 198 s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~ 275 (367)
|++|+++|+.. .|++++++++++++....... ....|. .++. ..+++......-+..++
T Consensus 220 S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~----------~~~~g~----~~~~-----~~A~l~~~~l~tl~~r~ 280 (418)
T PLN02242 220 SISKFISGGADIIAGAVCGPAELVNSMMDLHHGA----------LMLLGP----TMNP-----KVAFELSERLPHLSLRM 280 (418)
T ss_pred eCccccCCCCCceEEEEEcCHHHHHHHHHHhhhh----------hhccCC----CCCH-----HHHHHHHcCCCcHHHHH
Confidence 99999976543 489999999887766431100 000111 1222 22222222222256677
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCC----Cc-----------cCCCceEEEEcCCCC-CHHHHHHHH
Q 017726 276 ERHRRLGKATRLAVEAWGLKNCTQK----EE-----------WFSDTVTAVIVPSHI-NSSEIVRRA 326 (367)
Q Consensus 276 ~~~~~~~~~l~~~L~~~g~~~~~~~----~~-----------~~~~~~~~~~~~~~~-~~~~l~~~L 326 (367)
+++.++++++.+.|++.++.+.-|. +. ...+.+++|.+. +. ....|++.|
T Consensus 281 ~~~~~~a~~la~~L~~~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~-~~~~~~~f~~~l 346 (418)
T PLN02242 281 KEHCRRAMEYAKRMKELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMD-TEERANRLMRYL 346 (418)
T ss_pred HHHHHHHHHHHHHHHhCCCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEEC-CHHHHHHHHHHh
Confidence 8899999999999999877666442 10 124568889883 32 234566655
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-24 Score=195.57 Aligned_cols=283 Identities=15% Similarity=0.153 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.....++++.+++++|.+. . ++++||+.|+..++.+++.+||+|+++.+.|.+.. +...+...|+++..++.+
T Consensus 62 ~p~~~~le~~lA~l~g~~~--a-v~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-- 136 (389)
T PRK05968 62 NPTVRAFEEMLAKLEGAED--A-RGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGR-- 136 (389)
T ss_pred ChhHHHHHHHHHHHhCCCc--E-EEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCC--
Confidence 3557899999999999865 3 44577889999988888999999999998877653 445677789999988754
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|++++++++. ++|+|++++|.|+++.+.|+++|.++|++ +|+++++|++++.+...-+ ...++|++++|
T Consensus 137 ---d~~~l~~~i~-----~tklV~ie~pt~~~~~~~dl~~i~~la~~--~gi~vivD~a~a~~~~~~p-~~~g~Divv~S 205 (389)
T PRK05968 137 ---DEEAVAKALP-----GAKLLYLESPTSWVFELQDVAALAALAKR--HGVVTMIDNSWASPVFQRP-ITLGVDLVIHS 205 (389)
T ss_pred ---CHHHHHHhcc-----cCCEEEEECCCCCCCcHHHHHHHHHHHHH--cCCEEEEECCCcchhccCc-hhcCCcEEEee
Confidence 7899988873 56999999999999999999999999999 9999999999876543222 23578999999
Q ss_pred CCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 199 SQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
++|+++|+.+ .|+++.++++++++...... . .|. ..+....+.+..+++ .+..+.+
T Consensus 206 ~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~------------~-~g~----~~~~~~A~~~l~~L~-----tl~~r~~ 263 (389)
T PRK05968 206 ASKYLGGHSDTVAGVVAGSKEHIARINAEAYP------------Y-LGA----KLSPFEAWLLLRGLR-----TLPLRMK 263 (389)
T ss_pred ccccccCCCCeEEEEEEECHHHHHHHHHHHHH------------h-CCC----CCChHHHHHHHcccC-----cHHHHHH
Confidence 9999987654 58888999888776532100 0 111 122222122222222 2567778
Q ss_pred HHHHHHHHHHHHHHHc-CCcccc-CCCc-------cCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC------
Q 017726 277 RHRRLGKATRLAVEAW-GLKNCT-QKEE-------WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV------ 341 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~------ 341 (367)
+..+++..+.+.|++. ++..+. |.-. ...+.++.|.+..+.+..+|++.|. ..++.+..|....
T Consensus 264 ~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~~~~~~f~~~L~-~~~~~~s~G~~~slv~p~~ 342 (389)
T PRK05968 264 AHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREGIDVRAFADALK-LFRLGVSWGGHESLVVPAE 342 (389)
T ss_pred HHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECCHHHHHHHHHhCC-ccEEecCCCCCCceeeeCc
Confidence 8888999999999987 664443 2100 0123488888843456678888885 4466665442111
Q ss_pred -----------------CCcEEEEeecCCCCHHHHHHhh
Q 017726 342 -----------------AGKVFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 342 -----------------~~~~iRi~~~~~~~~~~~~~~~ 363 (367)
.++.+|+| .|..+.+|+..++
T Consensus 343 ~~~~~~~~~~~~~~~gi~~~liR~S-vGlE~~~dl~~dl 380 (389)
T PRK05968 343 VVLQQKAQPNSAARFGVSPRSVRLH-VGLEGTEALWADL 380 (389)
T ss_pred ccccccCCHHHHHhcCCCCCeEEEE-eccCCHHHHHHHH
Confidence 13569999 5777777776554
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-24 Score=194.05 Aligned_cols=321 Identities=15% Similarity=0.088 Sum_probs=207.9
Q ss_pred hHHHHHHHccCCCCC-CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeEEEEeCCcchHH
Q 017726 21 PDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSLL 98 (367)
Q Consensus 21 ~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl~~~~~~~~~~ 98 (367)
.++-++++.+..... ..+ .....++++.+++++|.+. .++++||++|+..++.++ +.+||+|+++.+.|++..
T Consensus 9 ~~~~~~~v~~~~~~~~~~~--g~~~~~le~~la~~~g~~~---~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~ 83 (380)
T TIGR03588 9 DQDDIDAVVEVLKSDFLTQ--GPTVPAFEEALAEYVGAKY---AVAFNSATSALHIACLALGVGPGDRVWTTPITFVATA 83 (380)
T ss_pred CHHHHHHHHHHHhcCCccC--ChhHHHHHHHHHHHHCCCe---EEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHH
Confidence 344455555433221 122 3557899999999999864 355578999999999887 789999999999876643
Q ss_pred HHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeee
Q 017726 99 WIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGV 177 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~ 177 (367)
..++..|++++.++.+. ++.+|++++++++++...+++++|++++ ++|...|+++|.++|++ +|++||+|++
T Consensus 84 --~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~~~---~~G~~~~~~~i~~l~~~--~~~~lI~D~a 156 (380)
T TIGR03588 84 --NCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVPVD---FAGKSVDMQAIAALAKK--HGLKIIEDAS 156 (380)
T ss_pred --HHHHHcCCEEEEEecCCCcCCcCHHHHHHHhhcccCCCceEEEEeC---CCCccCCHHHHHHHHHH--cCCEEEEECC
Confidence 55678899999999864 5678999999999842113578888654 68999999999999999 9999999999
Q ss_pred eccCceeeccccccc----eEEEecCC--CcccCCCcceeeeeCHHHHHHhccCCCCceeechH------HHHHHhhcCC
Q 017726 178 SSICAIDFRMDEWGI----DVALTGSQ--KALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK------DYIKFYNLGT 245 (367)
Q Consensus 178 ~~~~~~~~~~~~~~~----d~~~~s~~--K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 245 (367)
|+++.. ++....+. |+.++|+| |++.++.|..++..++++.+++......+...+.. .....++.+.
T Consensus 157 ~a~g~~-~~~~~~g~~~~~d~~~~S~~~~K~~~~~~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 235 (380)
T TIGR03588 157 HALGAE-YGGKPVGNCRYADATVFSFHPVKIITTAEGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQE 235 (380)
T ss_pred CcccCc-cCCEeCCCccccceEEEecCCCCcccccCceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeec
Confidence 998865 44444455 99999977 99976665334445677777665432211111000 0000111110
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCC-CccCCCceEEEEcC--CCCCHHH
Q 017726 246 FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQK-EEWFSDTVTAVIVP--SHINSSE 321 (367)
Q Consensus 246 ~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~ 321 (367)
.+ .+ ..+..+.+++...+-..++++.++.+++++++.+.|+++ ++.+..+. .....+.+..+.++ .+.+.++
T Consensus 236 --~g-~n-~~m~~l~aa~g~~qL~~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~ 311 (380)
T TIGR03588 236 --LG-FN-YRMTDIQAALGLSQLKKLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQEFGCTRKE 311 (380)
T ss_pred --cc-cc-cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCcCCCCHHH
Confidence 00 00 011223444443333346788889999999999999987 45544321 11122334444443 2357889
Q ss_pred HHHHHHhhCCeEEccCCCCCC---------------------CcEEEEeecCCCCHHHH
Q 017726 322 IVRRAWQRYNLSLGLGLNKVA---------------------GKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 322 l~~~L~~~~gv~v~~g~~~~~---------------------~~~iRi~~~~~~~~~~~ 359 (367)
+.+.|.+ .||.++..+.+.. ...+++.++...+++|+
T Consensus 312 l~~~L~~-~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv 369 (380)
T TIGR03588 312 VFEALRA-AGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQ 369 (380)
T ss_pred HHHHHHH-CCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHH
Confidence 9999965 4998875543210 14588877776665543
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.2e-24 Score=192.83 Aligned_cols=282 Identities=17% Similarity=0.112 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 119 (367)
....++++.++++.|.+ .+++++||++|+..++.+++.+||+|+++.+.|.+.. +...+...++++..++.
T Consensus 51 p~~~~le~~lA~l~g~~---~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~---- 123 (382)
T TIGR02080 51 PTRDLLQQALAELEGGA---GAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQ---- 123 (382)
T ss_pred chHHHHHHHHHHHhCCC---cEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECC----
Confidence 55779999999999842 4889999999999999999999999999999877543 33444555677776642
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecC
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS 199 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~ 199 (367)
.|+++++++++ +++|+|++++|+||||.+.|+++|.++|++ +|+++++|+++..+....+. ..++|++++|+
T Consensus 124 -~d~~~l~~ai~----~~tklV~l~~p~NPtG~~~dl~~I~~la~~--~g~~vvvD~a~~~~~~~~pl-~~gaDivv~S~ 195 (382)
T TIGR02080 124 -GDEQALRAALA----QKPKLVLIETPSNPLLRVVDIAKICHLAKA--VGAVVVVDNTFLSPALQNPL-ALGADLVLHSC 195 (382)
T ss_pred -CCHHHHHHhcC----cCceEEEEECCCCCCCEecCHHHHHHHHHH--cCCEEEEECCCcccccCCch-hhCCCEEEeec
Confidence 37899999997 467999999999999999999999999999 99999999999765432222 34789999999
Q ss_pred CCcccCCCc--ceeeee-CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 200 QKALSLPTG--MGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 200 ~K~~~g~~g--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
+|+++|+.+ .|+++. ++++++++..... ..|. +.+......+...++ -+..+++
T Consensus 196 sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~--------------~~g~----~~sp~~a~l~lr~l~-----tl~~R~~ 252 (382)
T TIGR02080 196 TKYLNGHSDVIAGAVIAKDPQVAEELAWWAN--------------NLGV----TGGAFDSYLTLRGLR-----TLVARMR 252 (382)
T ss_pred ceeccCCCCceeEEEEeCCHHHHHHHHHHHH--------------ccCC----CCCHHHHHHHHcccc-----hHHHHHH
Confidence 999987766 477766 5666665543210 1121 233322111211222 2556677
Q ss_pred HHHHHHHHHHHHHHHc-CCc-cccC----CCc--------cCCCceEEEEcCCCCC-HHHHHHHHHhhCCeEEccCC-C-
Q 017726 277 RHRRLGKATRLAVEAW-GLK-NCTQ----KEE--------WFSDTVTAVIVPSHIN-SSEIVRRAWQRYNLSLGLGL-N- 339 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~~-~~~~----~~~--------~~~~~~~~~~~~~~~~-~~~l~~~L~~~~gv~v~~g~-~- 339 (367)
+..+++..+.+.|++. .+. +.-| .+. ...+.+++|.+..+.. ..+|++.|. -.++.+.-|- .
T Consensus 253 ~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~-~~~~~~s~G~~~s 331 (382)
T TIGR02080 253 LQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGGEQTVRRFLGGLS-LFTLAESLGGVES 331 (382)
T ss_pred HHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecCcHHHHHHHHHcCC-cceEeccCCCCcc
Confidence 8889999999999986 332 2222 110 1245688999842221 234555442 2233332221 1
Q ss_pred ----C-----------------CCCcEEEEeecCCCCHHHHHHhh
Q 017726 340 ----K-----------------VAGKVFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 340 ----~-----------------~~~~~iRi~~~~~~~~~~~~~~~ 363 (367)
+ ..++.||+| .|-++.+|+..++
T Consensus 332 l~~~p~~~~~~~~~~~~~~~~gi~~~liRls-vGlE~~~dl~~dl 375 (382)
T TIGR02080 332 LIAHPATMTHAAMGPEARAEAGISDTLLRLS-VGLEDADDLIADL 375 (382)
T ss_pred eeECCCccCcccCCHHHHHhcCCCcCeEEEE-eccCCHHHHHHHH
Confidence 0 113469998 5777777776554
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=191.93 Aligned_cols=283 Identities=16% Similarity=0.138 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.....++++.+++++|.+. +++++||+.|+..++.+++.+||+|+++.+.|.+.. +...++..|+++..++.+
T Consensus 53 ~p~~~~le~~la~l~g~~~---~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~-- 127 (380)
T TIGR01325 53 NPTVAAFEERIAALEGAER---AVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDPT-- 127 (380)
T ss_pred CchHHHHHHHHHHHhCCCc---EEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECCC--
Confidence 3557899999999999853 577899999999999888999999999887665543 445677789999988764
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ +++++|++++|+||+|.+.|+++|.++|++ +|+++++|++++.+...-+ ...++|+++.|
T Consensus 128 ---d~~~l~~~i~----~~tklV~le~p~np~g~~~dl~~I~~la~~--~gi~livD~a~~~~~~~~p-l~~g~Divv~S 197 (380)
T TIGR01325 128 ---DLNAWEAAVK----PNTKLVFVETPSNPLGELVDIAALAELAHA--IGALLVVDNVFATPVLQQP-LKLGADVVVYS 197 (380)
T ss_pred ---CHHHHHHhcC----CCceEEEEECCCCCCCeeeCHHHHHHHHHH--cCCEEEEECCCcccccCCc-hhhCCCEEEee
Confidence 7899998887 467999999999999999999999999999 9999999999875432222 24578999999
Q ss_pred CCCcccCCC-c-ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 199 SQKALSLPT-G-MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 199 ~~K~~~g~~-g-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
++|+++|+. . .|+++.++++++++..... ..|. +.+....+.+...++. +..+.+
T Consensus 198 ~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~--------------~~g~----~~~p~~a~~~l~~l~t-----l~~r~~ 254 (380)
T TIGR01325 198 ATKHIDGQGRVMGGVIAGSEELMAEVAVYLR--------------HTGP----AMSPFNAWVLLKGLET-----LSLRMQ 254 (380)
T ss_pred ccceecCCCCeEEEEEEeCHHHHHHHHHHHH--------------hhCC----CCCHHHHHHHHhccCc-----HHHHHH
Confidence 999997653 2 3888889888776653210 0121 2222211111112222 556778
Q ss_pred HHHHHHHHHHHHHHHc-CCcc-----ccCCCc--------cCCCceEEEEcCCCC-CHHHHHHHHHhhCCeEEccC-CC-
Q 017726 277 RHRRLGKATRLAVEAW-GLKN-----CTQKEE--------WFSDTVTAVIVPSHI-NSSEIVRRAWQRYNLSLGLG-LN- 339 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~~~-----~~~~~~--------~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~v~~g-~~- 339 (367)
+..+++..+.+.|++. ++.. ..+.+. ...+.++.|.+. +. ....|.+.|+ -..+.+.-| ..
T Consensus 255 ~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~-~~~~~~~f~~~l~-~~~~~~s~G~~~s 332 (380)
T TIGR01325 255 KQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA-DRAAAWKVLDAVE-LVSITNNLGDAKS 332 (380)
T ss_pred HHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-CHHHHHHHHHcCC-cceEcccCCCCCe
Confidence 8889999999999987 4432 111111 124568889984 32 1334545442 222222211 10
Q ss_pred ----C-----------------CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 340 ----K-----------------VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 340 ----~-----------------~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
+ ..++.+|+| .|-++.+|+..++-
T Consensus 333 l~~~p~~~~~~~~~~~~~~~~gi~~~liR~s-vGlE~~~dl~~dl~ 377 (380)
T TIGR01325 333 TITHPATTTHGRMQPEERAAAGIGDGLVRLS-VGLEDVDDLIADLK 377 (380)
T ss_pred eeeCCCccCcccCCHHHHHhcCCCCCeEEEE-eccCCHHHHHHHHH
Confidence 0 113569998 57788888877654
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-23 Score=190.26 Aligned_cols=284 Identities=14% Similarity=0.166 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.+...++++.++++.|.+. .++++||++|+..++.+++.+||+|+++.+.|.+.. +...++..|+++..++.
T Consensus 63 ~p~~~~le~~lA~l~g~~~---~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~--- 136 (398)
T PRK08249 63 NPTVQAFEEKVRILEGAEA---ATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCET--- 136 (398)
T ss_pred ChHHHHHHHHHHHHhCCCe---EEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCC---
Confidence 4667899999999999654 466688899999999888999999999999887753 44456678888877764
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
.|+++++++++ +++|+|++++|+||+|.+.|+++|.++|++ +|+++++|++++.+....+. ..++|++++|
T Consensus 137 --~d~e~l~~~i~----~~tklV~ie~p~NPtg~v~dl~~I~~la~~--~gi~livD~t~a~~~~~~~l-~~~~Divv~S 207 (398)
T PRK08249 137 --GDHEQIEAEIA----KGCDLLYLETPTNPTLKIVDIERLAAAAKK--VGALVVVDNTFATPINQNPL-ALGADLVIHS 207 (398)
T ss_pred --CCHHHHHHhcC----CCCeEEEEECCCCCCCccCCHHHHHHHHHH--cCCEEEEECCcCccccCCch-hhCCCEEecc
Confidence 48999999997 467999999999999999999999999999 99999999998854432222 3578999999
Q ss_pred CCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 199 SQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
++|+++|+.. .|+++.++++++++..... . .+. ..+....+.+...++. +..+.+
T Consensus 208 ~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~-------------~-~g~----~~s~~~a~l~l~~l~t-----L~~R~~ 264 (398)
T PRK08249 208 ATKFLSGHADALGGVVCGSKELMEQVYHYRE-------------I-NGA----TMDPMSAYLILRGMKT-----LKLRVR 264 (398)
T ss_pred CceecCCCCCceEEEEECCHHHHHHHHHHHH-------------h-cCC----CCCHHHHHHHHhCcch-----HHHHHH
Confidence 9999975432 3788888888777653210 0 121 2333222222222222 456677
Q ss_pred HHHHHHHHHHHHHHHc-CCc-cccCC----Cc--------cCCCceEEEEcCCCC-CHHHHHHHHHhhCCeEEccC-CC-
Q 017726 277 RHRRLGKATRLAVEAW-GLK-NCTQK----EE--------WFSDTVTAVIVPSHI-NSSEIVRRAWQRYNLSLGLG-LN- 339 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~~-~~~~~----~~--------~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~v~~g-~~- 339 (367)
+..+++..+.+.|++. .+. +.-|. +. ...+.++.|.+..+. ...+|++.|+ -..+.+.-| ..
T Consensus 265 ~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~~~~~~~~f~~~l~-l~~~~~s~G~~~s 343 (398)
T PRK08249 265 QQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGGMDTVKRLLPKLR-YAHRAANLGAVET 343 (398)
T ss_pred HHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcCCHHHHHHHHHhCC-cceEccCCCCCCc
Confidence 8889999999999986 332 22221 10 123568888883221 1234444442 222222211 10
Q ss_pred ---------------------CCCCcEEEEeecCCCCHHHHHHhhh
Q 017726 340 ---------------------KVAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 340 ---------------------~~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
...++.+|+| .|-++.+|+..++-
T Consensus 344 l~~~~~~~~~~~~~~~~~~~~gi~~~liR~s-vGlE~~~dl~~dl~ 388 (398)
T PRK08249 344 IYGPARTTSHVENTLEERAALGIPEGLVRIS-VGIEDTEDLIADLE 388 (398)
T ss_pred eeeCCcccccccCCHHHHHhcCCCCCeEEEE-eccCCHHHHHHHHH
Confidence 0113569998 57777777776653
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=191.70 Aligned_cols=214 Identities=19% Similarity=0.178 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.+...++++.+++++|.+. .++++||+.|+..++.+++.+||+|++..+.|.+.. +...++..|+++..++.+
T Consensus 39 ~p~~~~le~~la~l~g~~~---a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-- 113 (369)
T cd00614 39 NPTVDALEKKLAALEGGEA---ALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPD-- 113 (369)
T ss_pred ChhHHHHHHHHHHHHCCCC---EEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeCCC--
Confidence 4678899999999999653 567788999999999999999999999998887764 334566789988888764
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ +++++|++++|+||+|.+.|+++|.++|++ +|+++++|++++.+... .....++|+++.|
T Consensus 114 ---d~~~l~~~i~----~~~~~v~~e~~~np~g~~~dl~~i~~la~~--~g~~livD~t~~~~~~~-~~~~~g~Divv~S 183 (369)
T cd00614 114 ---DPEALEAAIK----PETKLVYVESPTNPTLKVVDIEAIAELAHE--HGALLVVDNTFATPYLQ-RPLELGADIVVHS 183 (369)
T ss_pred ---CHHHHHHhcC----CCCeEEEEECCCCCCCeecCHHHHHHHHHH--cCCEEEEECCCcchhcC-ChhhhCCcEEEec
Confidence 5899999987 467999999999999999999999999999 99999999998876432 2224578999999
Q ss_pred CCCcccCCCc--ceeeeeCH-HHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHH
Q 017726 199 SQKALSLPTG--MGIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~ 275 (367)
++|+++|+.. .|++++++ ++++++..... . .|. +++.... ..++..+ +.+..++
T Consensus 184 ~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~-------------~-~g~----~~~p~~a---~~~l~~l--~tl~~r~ 240 (369)
T cd00614 184 ATKYIGGHSDVIAGVVVGSGEALIQRLRFLRL-------------A-LGT----ILSPFDA---WLLLRGL--KTLPLRM 240 (369)
T ss_pred cceeccCCCCceEEEEEeCcHHHHHHHHHHHH-------------h-hCC----CCCHHHH---HHHHcCC--CCHHHHH
Confidence 9999976532 58898887 77776653210 0 121 2333222 2222222 2256678
Q ss_pred HHHHHHHHHHHHHHHHc
Q 017726 276 ERHRRLGKATRLAVEAW 292 (367)
Q Consensus 276 ~~~~~~~~~l~~~L~~~ 292 (367)
++..+++.++.+.|++.
T Consensus 241 ~~~~~na~~la~~L~~~ 257 (369)
T cd00614 241 ERHSENALKVAEFLEKH 257 (369)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 88899999999999987
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.8e-24 Score=192.83 Aligned_cols=280 Identities=15% Similarity=0.134 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.....++++.+++++|.+. .++ +++|+.++..++. ++.+||+|+++++.|.+.. +...++..|++++.++..
T Consensus 53 ~p~~~~le~~lA~l~g~~~--~v~-~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-- 126 (390)
T PRK08064 53 NPTREALEDIIAELEGGTK--GFA-FASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMT-- 126 (390)
T ss_pred ChhHHHHHHHHHHHhCCCC--eEE-ECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCC--
Confidence 4667899999999999874 344 4777889988775 6789999999999887653 556677889999999864
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ +++++|++++|+||||.+.|+++|.++|++ +|+++++|++++.+....+. ..++|+++.|
T Consensus 127 ---d~~~l~~~l~----~~tklV~l~~p~NptG~~~dl~~I~~la~~--~g~~vvvD~a~~~~~~~~~~-~~g~Divv~S 196 (390)
T PRK08064 127 ---NLEEVAQNIK----PNTKLFYVETPSNPLLKVTDIRGVVKLAKA--IGCLTFVDNTFLTPLLQKPL-DLGADVVLHS 196 (390)
T ss_pred ---CHHHHHHhcC----CCceEEEEECCCCCCcEeccHHHHHHHHHH--cCCEEEEECCCCcccccCch-hhCCcEEEee
Confidence 7899999887 467999999999999999999999999999 99999999998765432232 4579999999
Q ss_pred CCCcccCCCc--ceeeeeC-HHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHH
Q 017726 199 SQKALSLPTG--MGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~ 275 (367)
++|+++|+.| .|+++++ +++++++..... ..|. ..+.. .+++....-.-+..+.
T Consensus 197 ~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~--------------~~g~----~~~~~-----~a~l~~~gl~tl~~R~ 253 (390)
T PRK08064 197 ATKFLAGHSDVLAGLAVVKDEELAQKLYFLQN--------------SFGA----VLGVQ-----DCWLVLRGLKTLHVRL 253 (390)
T ss_pred cceeccCCccceeEEEEeCCHHHHHHHHHHHH--------------hcCC----CCCHH-----HHHHHHcccCcHHHHH
Confidence 9999988876 3777765 567766653211 0111 12221 1112111111155777
Q ss_pred HHHHHHHHHHHHHHHHc-CC-ccccCC----C--------ccCCCceEEEEcCCCCCHHHHHHHHHhhCCe---EEccCC
Q 017726 276 ERHRRLGKATRLAVEAW-GL-KNCTQK----E--------EWFSDTVTAVIVPSHINSSEIVRRAWQRYNL---SLGLGL 338 (367)
Q Consensus 276 ~~~~~~~~~l~~~L~~~-g~-~~~~~~----~--------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv---~v~~g~ 338 (367)
++..+++..+.+.|++. .+ .++-|. + ....+.+++|.+ ++ .+++.+ +.+..++ .++.|-
T Consensus 254 ~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~-~~--~~~~~~-f~~~l~l~~~~~s~G~ 329 (390)
T PRK08064 254 EHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTL-QS--EEAVRQ-FVSHVKLPVFAVSLGA 329 (390)
T ss_pred HHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEE-CC--HHHHHH-HHHhCCcceEcccCCC
Confidence 88889999999999886 32 222221 1 012445888988 33 234433 3345565 444441
Q ss_pred ------------C-----------CCCCcEEEEeecCCCCHHHHHHhhh
Q 017726 339 ------------N-----------KVAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 339 ------------~-----------~~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
+ ...++.+|+| .|-.+.+|++.++.
T Consensus 330 ~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~S-vGle~~~dli~dl~ 377 (390)
T PRK08064 330 VESILSYPAKMSHAAMPKEERDERGITDGLLRLS-VGLENVDDLIADFE 377 (390)
T ss_pred CcceeECCcccccccCCHHHHHhcCCCCCeEEEE-eccCCHHHHHHHHH
Confidence 0 0123569998 46666666665543
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=190.59 Aligned_cols=284 Identities=14% Similarity=0.122 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchH-H-HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSL-L-WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~-~-~~~~~~~~g~~~~~v~~~~~ 118 (367)
.....++++.++++.|.+. ++++ +||++|+..++.+++++||+|+++.+.+... . +...++..|+++..++.+
T Consensus 44 ~p~~~~L~~~lA~l~g~~~--~v~~-~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~-- 118 (376)
T PRK06460 44 NPTVLELTKKIVELENAEM--GVAF-SSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPG-- 118 (376)
T ss_pred CccHHHHHHHHHHHhCCCc--EEEe-CCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECCC--
Confidence 4667899999999999865 3555 6678999999999999999999987755332 2 446678889998888754
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
+.+.++++++ +++|+|++++|+||||.+.|+++|.++|++ +|+++++|++++.+.. ......++|+++.|
T Consensus 119 ---~~~~l~~~~~----~~tklV~l~sp~NPtG~v~d~~~I~~la~~--~g~~vivDea~~~~~~-~~~l~~~~divv~S 188 (376)
T PRK06460 119 ---SDNIIEKAKS----KRYDVVFVENITNPLLRVVDITELSKVCKE--NGSILIVDATFSTPIN-QKPLELGADIVVHS 188 (376)
T ss_pred ---CHHHHHHhcC----CCceEEEEECCCCCCCcccCHHHHHHHHHH--cCCEEEEECCcCcccc-CChhhcCCCEEEee
Confidence 2344444444 477999999999999999999999999999 9999999999875422 11123468999999
Q ss_pred CCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 199 SQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
++|+++|+.+ .|+++.++++++++..... . .+. +.+......+...+++ ++.+++
T Consensus 189 ~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~------------~--~g~----~~~~~~a~~~l~~~~~-----l~~r~~ 245 (376)
T PRK06460 189 ASKFLAGHNDVIAGLAAGYGKLLNVIDQMRR------------T--LGT----SLDPHAAYLTLRGIKT-----LKIRMD 245 (376)
T ss_pred cceeccCCCCceEEEEecCHHHHHHHHHHHH------------h--cCC----CCCHHHHHHHHhchhh-----HHHHHH
Confidence 9999976543 5899999998877753210 0 011 1222111111112222 567788
Q ss_pred HHHHHHHHHHHHHHHc-CCc-cccC----CCc--------cCCCceEEEEcCCCC-CHHHHHHHHHhhCCeEEccC-CC-
Q 017726 277 RHRRLGKATRLAVEAW-GLK-NCTQ----KEE--------WFSDTVTAVIVPSHI-NSSEIVRRAWQRYNLSLGLG-LN- 339 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~~-~~~~----~~~--------~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~v~~g-~~- 339 (367)
+..++++++.+.|++. .+. +.-| .+. ...+.+++|.+..+. ...++++.|+ -..+.+.-| ..
T Consensus 246 ~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~~~~~~~~~~~l~-~~~~~~s~Gg~~s 324 (376)
T PRK06460 246 VINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALKVMKSLK-LIIPAQTLGGVNS 324 (376)
T ss_pred HHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCcHHHHHHHHHhCC-cceeccCCCCCce
Confidence 8999999999999986 332 2112 110 124568889883221 2334444442 111121111 10
Q ss_pred ---------------------CCCCcEEEEeecCCCCHHHHHHhhh
Q 017726 340 ---------------------KVAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 340 ---------------------~~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
...++.||+| .|-++.+|+..++.
T Consensus 325 l~~~p~~~~~~~~~~~~~~~~gi~~~liR~s-vGlE~~~dl~~dl~ 369 (376)
T PRK06460 325 VISHPATMSHRTLSLEERKIVGITDSLLRLS-VGIEDVNDLIEDLD 369 (376)
T ss_pred EEeCccccccccCCHHHHHhcCCCCCeEEEE-eccCCHHHHHHHHH
Confidence 0123569998 57778887776653
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-23 Score=190.10 Aligned_cols=217 Identities=15% Similarity=0.142 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 119 (367)
....++++.+++++|.+. .++++||+.|+..++.+++.+||+|+++.+.|.+.. +...+...|+++..++.+
T Consensus 59 p~~~~le~~lA~l~g~~~---av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~--- 132 (391)
T TIGR01328 59 PTVSNLEGRIAFLEGTEA---AVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMA--- 132 (391)
T ss_pred chHHHHHHHHHHHhCCCc---EEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECCC---
Confidence 557899999999999865 467788899999999888999999999988665543 445567789999888765
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecC
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS 199 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~ 199 (367)
|+++++++++ +++++|++++|+||+|.+.|+++|.++|++ +|+++++|++++.+...-+. ..++|++++|+
T Consensus 133 --d~e~l~~~i~----~~tklV~le~p~Np~G~v~dl~~I~~la~~--~gi~livD~a~a~~~~~~~~-~~g~Divv~S~ 203 (391)
T TIGR01328 133 --IPEEVKAHIK----DNTKIVYFETPANPTMKLIDMERVCRDAHS--QGVKVIVDNTFATPMLTNPV-ALGVDVVVHSA 203 (391)
T ss_pred --CHHHHHHhhc----cCCeEEEEECCCCCCCcccCHHHHHHHHHH--cCCEEEEECCCchhccCCch-hcCCCEEEccc
Confidence 7899999987 467999999999999999999999999999 99999999999865433222 34799999999
Q ss_pred CCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHH
Q 017726 200 QKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIER 277 (367)
Q Consensus 200 ~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~ 277 (367)
+|+++|+.+ .|+++.++++++++..... +...|. .++... ...++..+ ..+..++++
T Consensus 204 sK~lgg~g~~~gG~v~~~~~li~~l~~~~~------------~~~~g~----~l~~~~---a~l~l~~L--~tl~~r~~~ 262 (391)
T TIGR01328 204 TKYIGGHGDVVAGLICGKAELLQQIRMVGI------------KDMTGS----VISPFD---AWLILRGL--KTLNIRMKR 262 (391)
T ss_pred cccccCCCCceEEEEEcCHHHHHHHHHHHH------------HhCCCC----CCCcHH---HHHHHhCc--CcHHHHHHH
Confidence 999976543 4888899998877763210 000011 122211 11122211 225667888
Q ss_pred HHHHHHHHHHHHHHc-CC
Q 017726 278 HRRLGKATRLAVEAW-GL 294 (367)
Q Consensus 278 ~~~~~~~l~~~L~~~-g~ 294 (367)
..+++..+.+.|++. ++
T Consensus 263 ~~~na~~la~~L~~~p~v 280 (391)
T TIGR01328 263 HSENAMKVAEYLKSHPAV 280 (391)
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 899999999999987 54
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-23 Score=184.84 Aligned_cols=285 Identities=12% Similarity=0.136 Sum_probs=197.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.+....+++.++++-|.+. .++++||+.|+..++.+++.+||+|+++...|.+.. +...++..|+++..++..
T Consensus 61 nPt~~~le~~la~LEg~~~---a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~-- 135 (395)
T PRK08114 61 TLTHFSLQEAMCELEGGAG---CALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPL-- 135 (395)
T ss_pred ChhHHHHHHHHHHHhCCCe---EEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCC--
Confidence 3557789999999887554 466688999999999899999999999988776654 335567789999998743
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|.++++++++ ++||+|++.++.||+|.+.|+++|+++||++.+|+++++|.+++.+.. +++.++|+|++++|
T Consensus 136 ---d~~~l~~~l~----~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~-~~pl~~GaDivv~S 207 (395)
T PRK08114 136 ---IGADIAKLIQ----PNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL-FKALDFGIDISIQA 207 (395)
T ss_pred ---CHHHHHHhcC----CCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc-cCHHHcCCcEEEEc
Confidence 6899999997 467999999999999999999999999999323599999999988766 78888899999999
Q ss_pred CCCcccCCC--cceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 199 SQKALSLPT--GMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 199 ~~K~~~g~~--g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
.+||++|+. ++|+++.+++..+++... +...|. ..+....+.+...++ -+.-+.+
T Consensus 208 ~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~--------------~~~~G~----~~~p~~a~l~~rgl~-----TL~lR~~ 264 (395)
T PRK08114 208 GTKYLVGHSDAMIGTAVANARCWEQLREN--------------SYLMGQ----MVDADTAYMTSRGLR-----TLGVRLR 264 (395)
T ss_pred CcccccCCCcceeEEEEcCHHHHHHHHHH--------------HHhccC----CCCHHHHHHHHcCCC-----cHHHHHH
Confidence 999999885 458888887765544321 001132 233321111111111 1566788
Q ss_pred HHHHHHHHHHHHHHHc-CCc-cccCC----Cc--------cCCCceEEEEcCCCCCH---HHHHHHHHhhCCeEEccC-C
Q 017726 277 RHRRLGKATRLAVEAW-GLK-NCTQK----EE--------WFSDTVTAVIVPSHINS---SEIVRRAWQRYNLSLGLG-L 338 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~~-~~~~~----~~--------~~~~~~~~~~~~~~~~~---~~l~~~L~~~~gv~v~~g-~ 338 (367)
+..+++..+.+.|++. .+. ++-|. +. ...+.++.|.+..+.+. ..+++.|+ -..+.+.-| .
T Consensus 265 ~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~f~~~l~-l~~~a~SlGg~ 343 (395)
T PRK08114 265 QHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDEQLANYLDNFS-LFSMAYSWGGF 343 (395)
T ss_pred HHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCcccHHHHHHHHHhCC-cceeecccCCc
Confidence 9999999999999987 332 22221 10 12466888998421122 23444442 222232222 1
Q ss_pred C---C-----------------CCCcEEEEeecCCCCHHHHHHhh
Q 017726 339 N---K-----------------VAGKVFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 339 ~---~-----------------~~~~~iRi~~~~~~~~~~~~~~~ 363 (367)
. . ..++.||+| .|-++.+|+..++
T Consensus 344 ~SLi~~~~~~~~~~~~~~~~~~~~~~liRlS-vGlEd~~DLi~Dl 387 (395)
T PRK08114 344 ESLILANQPEEIAAIRPAGEVDFTGTLIRLH-IGLEDVDDLIADL 387 (395)
T ss_pred cceeccCCchhhhccCChhHhcCCCCeEEEE-eccCCHHHHHHHH
Confidence 1 0 123569998 5777777776654
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-23 Score=190.11 Aligned_cols=307 Identities=17% Similarity=0.093 Sum_probs=192.5
Q ss_pred HHHHHHHccCC--CCCCCCcHHHHHHHHHHHHHHHhcCCC-----CceE--EecCChhHH--HHHHHHccCCCCCeEEEE
Q 017726 22 DQVIRAMNRNN--EDYRSPAVPALTKTLLEDIKKIFKTTS-----GTPF--LIPTTGTGA--WESALTNTLSPGDRIISF 90 (367)
Q Consensus 22 ~~v~~a~~~~~--~~~~~~~~~~~~~~~~~~la~~~~~~~-----~~~v--~~~~ggt~a--l~~~~~~~~~~gd~vl~~ 90 (367)
+.+.+++.+.. .....|....+..++|+.+++++.... ++.+ ..+.+|+++ +...+..++.|||+|+++
T Consensus 69 ~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~ 148 (423)
T PLN02397 69 NVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIP 148 (423)
T ss_pred hHHHHHHHHhhccCCCCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEe
Confidence 45566543321 112245556778899999999874321 1223 113344444 444444555799999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeC-C-CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHh
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVES-D-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE 165 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~-~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~ 165 (367)
+|.|+.+. ..++..|.+++.+++ + .++.+|++.+++.+.+.+ ++++++++++||||||.+++ +++|.++|++
T Consensus 149 ~P~y~~y~--~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~-~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~ 225 (423)
T PLN02397 149 NPTWGNHH--NIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAP-DGSFVLLHACAHNPTGVDPTPEQWEQISDLIKS 225 (423)
T ss_pred CCCchhHH--HHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhCC-CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 99776643 567888999999987 3 346789999988887542 46789999999999999997 4557777888
Q ss_pred cCCCcEEEEeeeeccCcee------ec---cccc-cceEEEecCCCcccCCCc--ceeee--e-CHHHHHHhccCCCCce
Q 017726 166 YRHPALFLVDGVSSICAID------FR---MDEW-GIDVALTGSQKALSLPTG--MGIVC--A-SPKALEASKTAKSVRV 230 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~------~~---~~~~-~~d~~~~s~~K~~~g~~g--~g~~~--~-~~~~~~~~~~~~~~~~ 230 (367)
+|++||+|++|...... .. .... ...+++.|+||.++ ++| +|+++ . +++.++++....
T Consensus 226 --~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~-~~G~RvG~~v~~~~~~~~~~~~~~~~---- 298 (423)
T PLN02397 226 --KNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMG-LYGERVGALSVVCKSADVAVRVKSQL---- 298 (423)
T ss_pred --CCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCC-CccccceEEEEEeCCHHHHHHHHHHH----
Confidence 99999999998754321 01 1111 23588889999995 444 69984 3 555544332110
Q ss_pred eechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHH--H-Hh--ChHHHHHHHHHHHHHHHHHHHHcC----CccccCCC
Q 017726 231 FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLI--F-EE--GLENVIERHRRLGKATRLAVEAWG----LKNCTQKE 301 (367)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~--~-~~--g~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~ 301 (367)
....... ...++.....+...++..- . ++ .++++++++.++++.+.+.|+++| +.+..|
T Consensus 299 --------~~~~~~~--~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~~~~~~~~~p-- 366 (423)
T PLN02397 299 --------KLIARPM--YSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSPGDWSHITK-- 366 (423)
T ss_pred --------HHHHhcc--cCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccC--
Confidence 0000010 1123333323333333221 0 11 156778899999999999999986 555555
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHhhhh
Q 017726 302 EWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQLLF 365 (367)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 365 (367)
.+++++|+++ + ++++++|.+++||.+.+ ++ ||++.+ ..+..+...+.|+
T Consensus 367 --~gg~fl~~~l----~-~~~~~~Ll~~~~V~v~~------~~--Ri~~~~~~~~~i~~~~~~i~ 416 (423)
T PLN02397 367 --QIGMFSFTGL----N-KEQVDRMTKEYHIYMTR------DG--RISMAGLSSKNVPYLADAIH 416 (423)
T ss_pred --CceEEEecCC----C-HHHHHHHHHhCCEEECC------CC--eEEEeeCCHHHHHHHHHHHH
Confidence 5666666655 2 46999999999999862 22 998764 3334444444443
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-23 Score=188.02 Aligned_cols=295 Identities=14% Similarity=0.138 Sum_probs=191.5
Q ss_pred ChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeEEEEeCCcchHH
Q 017726 20 IPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSLL 98 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl~~~~~~~~~~ 98 (367)
..++.++++.+.....+.........++++.+++++|.+. +++++|||+|+.+++.++ +.|||+|+++.+.|.+..
T Consensus 9 ~~~~e~~a~~~~~~~~~~~~~g~~~~~~e~~la~~~g~~~---~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~ 85 (376)
T TIGR02379 9 VTGQELEYIAEAISEGKLSGDGPFSRRCETWLENRTGTKK---ALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTA 85 (376)
T ss_pred CCHHHHHHHHHHHHcCCccCCcHHHHHHHHHHHHHhCCCe---EEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHH
Confidence 4555566776644333222234667899999999988753 889999999999988876 899999999999877653
Q ss_pred HHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeee
Q 017726 99 WIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGV 177 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~~-~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~ 177 (367)
..+...|++++.++++.+ +.+|+++++++++ +++|+|+ |+|++|...|+++|.++|++ +|++||+|++
T Consensus 86 --~~~~~~G~~~v~vd~d~~~~~~d~~~le~~i~----~~tk~Ii---p~~~~G~~~d~~~I~~la~~--~~i~vIeDaa 154 (376)
T TIGR02379 86 --NAFVLRGAKIVFVDIRPDTMNIDETLIESAIT----HRTKAIV---PVHYAGVACDMDTIMALANK--HQLFVIEDAA 154 (376)
T ss_pred --HHHHHcCCEEEEEecCCCcCCCCHHHHHHhcC----cCceEEE---EeCCCCCccCHHHHHHHHHH--CCCEEEEECc
Confidence 445678999999999866 5789999999987 4679886 45679999999999999999 9999999999
Q ss_pred eccCceeecccccc--ceEEEecC--CCcccC-CCcceeee-eCHHHHHHhccCCCCceeec-hHH-HHHHh---hcCCc
Q 017726 178 SSICAIDFRMDEWG--IDVALTGS--QKALSL-PTGMGIVC-ASPKALEASKTAKSVRVFFD-WKD-YIKFY---NLGTF 246 (367)
Q Consensus 178 ~~~~~~~~~~~~~~--~d~~~~s~--~K~~~g-~~g~g~~~-~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~---~~~~~ 246 (367)
|+.++. ++....+ .|+.++|+ .|.+.+ +.| |+++ .++++.+++...+..+...+ ... ....+ ..|.
T Consensus 155 ~~~g~~-~~~~~~g~~~~~~~fSf~~~K~l~~g~~g-G~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~- 231 (376)
T TIGR02379 155 QGVMST-YKGRALGSIGHLGTFSFHETKNYTSGGEG-GALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGS- 231 (376)
T ss_pred cccCCc-cCCcccCCCCCEEEEeCCCCCcCcccCCc-eEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecc-
Confidence 998763 2222222 25666664 465643 355 6555 45888887775543211100 000 00000 0121
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc---C-Ccccc-CCCccCCCceEEEEcCCCCCHHH
Q 017726 247 WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW---G-LKNCT-QKEEWFSDTVTAVIVPSHINSSE 321 (367)
Q Consensus 247 ~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~---g-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 321 (367)
.+-++- +.+++...+-..+++..++.+++++...+.|+++ + ..+.. +........++++.++...+.++
T Consensus 232 -n~~~~~-----~~Aa~g~~qL~~l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~r~~ 305 (376)
T TIGR02379 232 -SYLPSE-----LQAAYLWAQLEQADRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYIKLKDEDDRNE 305 (376)
T ss_pred -cCCccH-----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEEECCcCCHHH
Confidence 111222 2233333322336667777788888888888764 1 12211 11222233456677754456789
Q ss_pred HHHHHHhhCCeEEccCC
Q 017726 322 IVRRAWQRYNLSLGLGL 338 (367)
Q Consensus 322 l~~~L~~~~gv~v~~g~ 338 (367)
+.+.|.++ ||.++.++
T Consensus 306 l~~~L~~~-gI~~~~~~ 321 (376)
T TIGR02379 306 LIKYLKEQ-EIMAVFHY 321 (376)
T ss_pred HHHHHHHC-CCCccccC
Confidence 99999755 99887543
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-23 Score=186.68 Aligned_cols=214 Identities=19% Similarity=0.133 Sum_probs=156.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~ 119 (367)
.....++++.+++++|.+. +++++||+.|+..++.+++.+||+|+++.+.|.+.. +...++..|+++..+.
T Consensus 52 np~~~~lE~~lA~l~g~~~---~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~----- 123 (385)
T PRK08574 52 NPTLRPLEEALAKLEGGVD---ALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAY----- 123 (385)
T ss_pred CccHHHHHHHHHHHhCCCc---EEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcEEEEEC-----
Confidence 3567789999999999653 566789999999999888999999999999887764 2233355688777653
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecC
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS 199 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~ 199 (367)
+|++++++++++ .++|+|++++|+||+|.+.|+++|.++|++ +|+++++|++++.+... .....++|++++|+
T Consensus 124 -~d~~~l~~~i~~---~~tklV~ie~p~NPtG~v~dl~~I~~la~~--~gi~livD~t~a~~~~~-~~l~~GaDivv~S~ 196 (385)
T PRK08574 124 -PSTEDIIEAIKE---GRTKLVFIETMTNPTLKVIDVPEVAKAAKE--LGAILVVDNTFATPLLY-RPLRHGADFVVHSL 196 (385)
T ss_pred -CCHHHHHHhcCc---cCceEEEEECCCCCCCEecCHHHHHHHHHH--cCCEEEEECCCCccccC-ChhhhCCcEEEeeC
Confidence 358899999874 267999999999999999999999999999 99999999999765432 22245789999999
Q ss_pred CCcccCCCc--ceeee-eCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 200 QKALSLPTG--MGIVC-ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 200 ~K~~~g~~g--~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
+|+++|+.. .|+++ .++++.+++.... +. .|. .++....+.+...++ -+..+.+
T Consensus 197 sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~-------------~~-~g~----~~~p~~a~l~l~~l~-----tL~~R~~ 253 (385)
T PRK08574 197 TKYIAGHNDVVGGVAVAWSGEFLEELWEWR-------------RR-LGT----IMQPFEAYLVLRGLK-----TLEVRFE 253 (385)
T ss_pred ceeecCCCCceeEEEEECcHHHHHHHHHHH-------------Hh-cCC----CCCHHHHHHHHcccC-----cHHHHHH
Confidence 999987643 26344 4677666654221 00 121 233221111111222 2566778
Q ss_pred HHHHHHHHHHHHHHHc
Q 017726 277 RHRRLGKATRLAVEAW 292 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~ 292 (367)
+..+++..+.+.|++.
T Consensus 254 ~~~~na~~la~~L~~~ 269 (385)
T PRK08574 254 RQCRNAMAIAEFLSEH 269 (385)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 8888999999999886
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-23 Score=188.40 Aligned_cols=283 Identities=15% Similarity=0.121 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 119 (367)
....++++.++++.|.+. .+++ +||++|+..++.+++++||+|+++.+.|.+.. +...+...|+++..++.
T Consensus 61 p~~~~Le~~lA~~~g~~~--~i~~-~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~---- 133 (388)
T PRK07811 61 PTRTALEEQLAALEGGAY--GRAF-SSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDL---- 133 (388)
T ss_pred ccHHHHHHHHHHHhCCCc--eEEe-CCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCC----
Confidence 567899999999999876 3444 67899999999999999999999999777543 33334446787777765
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecC
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS 199 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~ 199 (367)
.|+++++++++ +++|+|++++|+||+|.+.|+++|.++|++ +|+++|+|++++.+....+. ..++|++++|+
T Consensus 134 -~d~e~l~~~i~----~~tklV~ie~p~NPtg~~~dl~~I~~la~~--~gi~lIvD~a~a~~~~~~p~-~~gaDivv~S~ 205 (388)
T PRK07811 134 -SDLDAVRAAIT----PRTKLIWVETPTNPLLSITDIAALAELAHD--AGAKVVVDNTFASPYLQQPL-ALGADVVVHST 205 (388)
T ss_pred -CCHHHHHHhcC----cCCeEEEEECCCCCcceecCHHHHHHHHHH--cCCEEEEECCCCccccCCch-hhCCcEEEecC
Confidence 38999999987 467999999999999999999999999999 99999999999876433232 35789999999
Q ss_pred CCcccCCCc--ceeeeeC-HHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 200 QKALSLPTG--MGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 200 ~K~~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
+|+++|+.+ .|+++++ +++.+++.... ...|. ..+... ...++..+ ..+..+.+
T Consensus 206 sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~--------------~~~g~----~~s~~~---a~l~~~~L--~tl~~R~~ 262 (388)
T PRK07811 206 TKYIGGHSDVVGGALVTNDEELDEAFAFLQ--------------NGAGA----VPGPFD---AYLTLRGL--KTLAVRMD 262 (388)
T ss_pred ceeecCCCCcEEEEEEECCHHHHHHHHHHH--------------HhcCC----CCCHHH---HHHHHhcc--CcHHHHHH
Confidence 999987654 4777765 55555443210 00111 122211 11112211 12567778
Q ss_pred HHHHHHHHHHHHHHHc-CCc-cccCC----Cc--------cCCCceEEEEcCCCC-CHHHHHHHHHhhCCeEEccCC-C-
Q 017726 277 RHRRLGKATRLAVEAW-GLK-NCTQK----EE--------WFSDTVTAVIVPSHI-NSSEIVRRAWQRYNLSLGLGL-N- 339 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~~-~~~~~----~~--------~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~v~~g~-~- 339 (367)
+..+++..+.+.|++. ++. +.-|. +. ...+.+++|.+..+. ....|.+.|. -..+.+.-|- .
T Consensus 263 ~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~-~~~~~~s~G~~~s 341 (388)
T PRK07811 263 RHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGGEEAARDFCARTK-VFTLAESLGGVES 341 (388)
T ss_pred HHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCCCHHHHHHHHHhCC-cceeeccCCCCcc
Confidence 8899999999999987 543 22221 10 123568899983221 1233444442 1122222121 0
Q ss_pred ----C--------------CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 340 ----K--------------VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 340 ----~--------------~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
+ ..++.||+| .|-++.+|+..++.
T Consensus 342 l~~~~~~~~~~~~~~~~~gi~~~liR~s-vGlE~~~dl~~dl~ 383 (388)
T PRK07811 342 LIEHPSAMTHASTAGSQLEVPDDLVRLS-VGIEDVADLLADLE 383 (388)
T ss_pred eEeCCcccCcccCCHhhcCCCCCEEEEE-eCCCCHHHHHHHHH
Confidence 0 113569998 58778888876654
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-22 Score=185.99 Aligned_cols=235 Identities=14% Similarity=0.106 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 119 (367)
....++++.++++.|.+. .++++||+.|+..++.+++.+||+|+++...|.+.. +...++..|+++..++..
T Consensus 70 p~~~~le~~lA~l~g~~~---al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~--- 143 (403)
T PRK07810 70 PTVSMFEERLRLIEGAEA---CFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGE--- 143 (403)
T ss_pred chHHHHHHHHHHHhCCCc---EEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCC---
Confidence 447799999999999663 577799999999999888999999999876554432 445677789999999753
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecC
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS 199 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~ 199 (367)
|+++++++++ +++++|++++|+||+|.+.|+++|.++|++ +|+++++|++++.+...-+. ..++|++++|+
T Consensus 144 --d~~~l~~ai~----~~tklV~~esp~Nptg~v~dl~~I~~la~~--~g~~vivD~a~a~~~~~~~~-~~gaDivv~S~ 214 (403)
T PRK07810 144 --DLSQWEEALS----VPTQAVFFETPSNPMQSLVDIAAVSELAHA--AGAKVVLDNVFATPLLQRGL-PLGADVVVYSG 214 (403)
T ss_pred --CHHHHHHhcC----cCceEEEEECCCCCCCeecCHHHHHHHHHH--cCCEEEEECCCCccccCChh-hcCCcEEEccC
Confidence 8999999998 467999999999999999999999999999 99999999999866542222 45799999999
Q ss_pred CCcccCCCc--ceeeeeCHHHHHH-hccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 200 QKALSLPTG--MGIVCASPKALEA-SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 200 ~K~~~g~~g--~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
+|+++|... .|+++++++.+.. +.... + ..|. .++....+.+..+++. +..+.+
T Consensus 215 tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~-------------~-~~g~----~~s~~~a~l~l~~L~t-----l~~R~~ 271 (403)
T PRK07810 215 TKHIDGQGRVLGGAILGDREYIDGPVQKLM-------------R-HTGP----ALSAFNAWVLLKGLET-----LALRVR 271 (403)
T ss_pred CceecCCcCceeEEEEeChHHHHHHHHHHH-------------H-HhCC----CCCHHHHHHHHhccCc-----HHHHHH
Confidence 999975432 4888888876542 32110 0 1121 2333222222222222 677788
Q ss_pred HHHHHHHHHHHHHHHc-CCcccc-CC---Cc---------cCCCceEEEEcC
Q 017726 277 RHRRLGKATRLAVEAW-GLKNCT-QK---EE---------WFSDTVTAVIVP 314 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~~~~~-~~---~~---------~~~~~~~~~~~~ 314 (367)
+..+++..+.+.|++. ++..+. |. .+ ...+.+++|.+.
T Consensus 272 ~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~ 323 (403)
T PRK07810 272 HSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELD 323 (403)
T ss_pred HHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEc
Confidence 8999999999999987 543222 21 10 124568889884
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.9e-23 Score=185.25 Aligned_cols=283 Identities=16% Similarity=0.178 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.+..+.+++.++.+-+.+. .++++||++|+..++.+++++||+|+++++.|++.. +...++..|+++..++.+
T Consensus 63 nPt~~~Le~~la~le~~~~---~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~-- 137 (395)
T PRK05967 63 TPTTDALCKAIDALEGSAG---TILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPE-- 137 (395)
T ss_pred ChHHHHHHHHHHHHhCCCC---EEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCC--
Confidence 4556788888888876443 355577899999999999999999999999988865 235678899999988643
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
+.+.++++++ ++||+|++++|+||++.+.|+++|.++|++ +|+++++|++++.+ ......++|+|+++.|
T Consensus 138 ---~~e~l~~al~----~~TklV~lesPsNP~l~v~dl~~I~~la~~--~g~~vvVD~t~a~p-~~~~pl~~GaDivv~S 207 (395)
T PRK05967 138 ---IGAGIAKLMR----PNTKVVHTEAPGSNTFEMQDIPAIAEAAHR--HGAIVMMDNTWATP-LYFRPLDFGVDISIHA 207 (395)
T ss_pred ---CHHHHHHhcC----cCceEEEEECCCCCCCcHHHHHHHHHHHHH--hCCEEEEECCccCc-eecChhHcCCCEEEEe
Confidence 3578999887 467999999999999999999999999999 99999999999764 3345556799999999
Q ss_pred CCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 199 SQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
.+|+++|..+ .|+++.+++..+++... +...|. +.+....+.+...++. +.-+.+
T Consensus 208 ~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~--------------~~~~G~----~~~p~da~l~~rgl~T-----l~lR~~ 264 (395)
T PRK05967 208 ATKYPSGHSDILLGTVSANEKCWPQLLEA--------------HGTLGL----CAGPDDTYQILRGLRT-----MGIRLE 264 (395)
T ss_pred cccccCCCCCeeEEEEEcCHHHHHHHHHH--------------HHHcCC----CCCHHHHHHHHcCccc-----HHHHHH
Confidence 9999986544 37777777765554321 001132 2333222222212221 566788
Q ss_pred HHHHHHHHHHHHHHHc-CCc-cccCC----Cc--------cCCCceEEEEcCCCC--C---HHHHHHHHHhhCCeEEccC
Q 017726 277 RHRRLGKATRLAVEAW-GLK-NCTQK----EE--------WFSDTVTAVIVPSHI--N---SSEIVRRAWQRYNLSLGLG 337 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~~-~~~~~----~~--------~~~~~~~~~~~~~~~--~---~~~l~~~L~~~~gv~v~~g 337 (367)
+..+++..+.+.|++. .+. +.-|. +. ...+.+++|.+..+. + ..+|.+.|+ -..+.+.-|
T Consensus 265 ~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~~~f~~~l~-l~~~~~slG 343 (395)
T PRK05967 265 HHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAKAHAFLDALE-IFGLGYSWG 343 (395)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCcccHHHHHHHHHhCC-cceEccCCC
Confidence 8999999999999986 442 22221 10 123568889884231 1 234444442 222222212
Q ss_pred C-C----------------CCCCcEEEEeecCCCCHHHHHHhh
Q 017726 338 L-N----------------KVAGKVFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 338 ~-~----------------~~~~~~iRi~~~~~~~~~~~~~~~ 363 (367)
- . ...++.+||| .|-++.+|+..++
T Consensus 344 ~~~sLi~~~~~~~~~~~~~~~~~~liRlS-vGlEd~~dLi~Dl 385 (395)
T PRK05967 344 GYESLALHVKLGDRTVAKAPYAGPVIRLQ-IGLEDVPDLKADL 385 (395)
T ss_pred CcceeeeeCCCChhHhhhccCCCCeEEEE-eccCCHHHHHHHH
Confidence 1 0 0123469998 5777777776654
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=189.60 Aligned_cols=230 Identities=16% Similarity=0.138 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.....++++.++++.|.+. .++++||++|+..++ +++.+||+|+++++.|.+.. +...++..|+++..++..
T Consensus 51 ~pt~~~le~~la~l~g~~~---~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-- 124 (366)
T PRK08247 51 NPTRGVLEQAIADLEGGDQ---GFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTA-- 124 (366)
T ss_pred CchHHHHHHHHHHHhCCCc---EEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECCC--
Confidence 3567899999999999876 366788899998765 57789999999999887653 445567789999988753
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ +++++|++++|+||+|.+.++++|.++|++ +|+++++|++++.+....+. ..++|+++.|
T Consensus 125 ---d~~~l~~~i~----~~tklv~le~P~NP~~~~~dl~~I~~la~~--~g~~lIvD~t~~~~~~~~p~-~~g~di~i~S 194 (366)
T PRK08247 125 ---SLKAIEQAIT----PNTKAIFIETPTNPLMQETDIAAIAKIAKK--HGLLLIVDNTFYTPVLQRPL-EEGADIVIHS 194 (366)
T ss_pred ---CHHHHHHhcc----cCceEEEEECCCCCCCcHHHHHHHHHHHHH--cCCEEEEECCCccccccCch-hcCCcEEEee
Confidence 8899999987 467999999999999999999999999999 99999999998644322222 3478999999
Q ss_pred CCCcccCCCc--ceeeeeC-HHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHH
Q 017726 199 SQKALSLPTG--MGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~ 275 (367)
++|+++|+.+ .|+++.+ +++.+++.... ...+. ..+......+..+++ .+..++
T Consensus 195 ~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~--------------~~~g~----~~s~~~a~l~~~~l~-----tl~~r~ 251 (366)
T PRK08247 195 ATKYLGGHNDVLAGLVVAKGQELCERLAYYQ--------------NAAGA----VLSPFDSWLLIRGMK-----TLALRM 251 (366)
T ss_pred cceeccCCCceeeeEEecChHHHHHHHHHHH--------------HhcCC----CCChHHHHHHHhccC-----cHHHHH
Confidence 9999987644 3777776 55655554221 00111 122221122222222 245667
Q ss_pred HHHHHHHHHHHHHHHHc-CCcc-ccCCCccCCCceEEEEc
Q 017726 276 ERHRRLGKATRLAVEAW-GLKN-CTQKEEWFSDTVTAVIV 313 (367)
Q Consensus 276 ~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~~~~~~~~ 313 (367)
++.+++++.+.+.|++. ++.. ..| ..+.++.|.+
T Consensus 252 ~~~~~~a~~l~~~L~~~p~v~~v~~P----~~gg~~sf~~ 287 (366)
T PRK08247 252 RQHEENAKAIAAFLNEQPGVTDVLYP----GRGGMLSFRL 287 (366)
T ss_pred HHHHHHHHHHHHHHHhCCCeeEEecC----CcCcEEEEEE
Confidence 77899999999999997 6653 233 1344677777
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-23 Score=185.52 Aligned_cols=275 Identities=14% Similarity=0.132 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH-H-HHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL-W-IDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~-~-~~~~~~~g~~~~~v~~~~~ 118 (367)
.....++++.++++. . .+ .++++||++|+..++.+++.+||+|+++++.|+... + ...++..|++++.++.+.+
T Consensus 50 ~p~~~~Le~~lA~l~--~-~~-~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~ 125 (366)
T PRK07582 50 NPTWRALEAALGELE--G-AE-ALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGM 125 (366)
T ss_pred CccHHHHHHHHHHHc--C-CC-EEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCCh
Confidence 356789999999998 2 23 566688889999999888999999999999887764 2 2334567999999987532
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeecc--CceeeccccccceEEE
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI--CAIDFRMDEWGIDVAL 196 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~--~~~~~~~~~~~~d~~~ 196 (367)
+ + .+. +++++|++++|+||+|.+.|+++|.++|++ +|+++++|+++.. +..+++ .++|+++
T Consensus 126 ~----~----~~~----~~t~lV~le~p~NPtg~v~di~~I~~~a~~--~g~~lvVD~t~~~~~~~~p~~---~g~Divv 188 (366)
T PRK07582 126 A----E----AAL----AGADLVLAETPSNPGLDVCDLAALAAAAHA--AGALLVVDNTTATPLGQRPLE---LGADLVV 188 (366)
T ss_pred H----H----Hhc----cCceEEEEECCCCCCCCccCHHHHHHHHHH--cCCEEEEECCCCCccccCchh---cCCcEEE
Confidence 1 1 222 367999999999999999999999999999 9999999999753 333333 4789999
Q ss_pred ecCCCcccCCCc--ceeeeeC-HHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHH
Q 017726 197 TGSQKALSLPTG--MGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLEN 273 (367)
Q Consensus 197 ~s~~K~~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~ 273 (367)
+|++|+++|+.| .|+++.+ +++.+++.... .. .|. +++......+...++ -++.
T Consensus 189 ~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~-------------~~-~g~----~~~~~~a~l~~r~l~-----tl~~ 245 (366)
T PRK07582 189 ASDTKALTGHSDLLLGYVAGRDPELMAAVERWR-------------LL-AGA----IPGPFEAWLAHRSLG-----TLGL 245 (366)
T ss_pred ecccccccCCCCeeEEEEEcCcHHHHHHHHHHH-------------HH-hCC----CCCHHHHHHHHhccc-----cHHH
Confidence 999999988877 4888874 66666554321 00 111 233322222222222 1556
Q ss_pred HHHHHHHHHHHHHHHHHHc-CCcccc-CC---Cc---------cCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEc-cCC
Q 017726 274 VIERHRRLGKATRLAVEAW-GLKNCT-QK---EE---------WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLG-LGL 338 (367)
Q Consensus 274 ~~~~~~~~~~~l~~~L~~~-g~~~~~-~~---~~---------~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~-~g~ 338 (367)
+.++..+++..+.+.|++. .+..+. |. .+ ...+.++.|.+. +.++..+.+ +..++... ..+
T Consensus 246 R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~---~~~~~~~~~-~~l~~~~~~~s~ 321 (366)
T PRK07582 246 RFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA---DAAAAERFV-AASRLVVAATSF 321 (366)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC---CHHHHHHHH-HhCCcceecccC
Confidence 6788889999999999997 543222 21 11 014568889983 445555555 44465443 211
Q ss_pred CC--------------CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 339 NK--------------VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 339 ~~--------------~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
+. ..++.||+| .+.++.+|++.++.
T Consensus 322 G~~~sl~~~~~~~~~~~~~~liR~s-vGlE~~~dli~dl~ 360 (366)
T PRK07582 322 GGVHTSADRRARWGDAVPEGFVRLS-CGIEDTDDLVADLE 360 (366)
T ss_pred CCccchhhhHHHcCCCCCCCeEEEE-eccCCHHHHHHHHH
Confidence 10 223569998 46666676665543
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.4e-23 Score=187.33 Aligned_cols=219 Identities=15% Similarity=0.108 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.....++++.+++++|.+. .++++||+.|+..++.+++.+||+|+++.+.|.... +...++..|+++..++.+
T Consensus 64 ~p~~~~le~~lA~l~g~~~---~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-- 138 (403)
T PRK07503 64 NPTLALLEQRMASLEGGEA---AVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLT-- 138 (403)
T ss_pred CchHHHHHHHHHHHhCCCc---EEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCC--
Confidence 3567899999999999865 356678899999999888999999999988664432 334566789999988764
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ +++|+|++++|+||+|.+.|+++|.++|++ +|+++++|++++.+....+. ..++|++++|
T Consensus 139 ---d~~~l~~~i~----~~tklV~le~p~NPtG~~~di~~I~~la~~--~gi~lIvD~a~a~~~~~~~l-~~g~Di~v~S 208 (403)
T PRK07503 139 ---DPAALKAAIS----DKTRMVYFETPANPNMRLVDIAAVAEIAHG--AGAKVVVDNTYCTPYLQRPL-ELGADLVVHS 208 (403)
T ss_pred ---CHHHHHHhcC----ccCcEEEEeCCCCCCCeeeCHHHHHHHHHH--cCCEEEEECCCcccccCCch-hhCCCEEEcc
Confidence 7899999987 467999999999999999999999999999 99999999999765332222 3578999999
Q ss_pred CCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 199 SQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
++|+++|+.+ .|+++.++++++++...... . ..|. .++....+.+...++ -+..+.+
T Consensus 209 ~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~-----------~-~~g~----~~s~~~a~l~l~~L~-----tl~~r~~ 267 (403)
T PRK07503 209 ATKYLGGHGDITAGLVVGGKALADRIRLEGLK-----------D-MTGA----VMSPFDAFLLMRGLK-----TLALRMD 267 (403)
T ss_pred ccccccCCCceeEEEEEcCHHHHHHHHhhhHH-----------h-CcCC----CCCHHHHHHHHcCcc-----hHHHHHH
Confidence 9999976443 58888888887777521100 0 0011 233322111111222 1556667
Q ss_pred HHHHHHHHHHHHHHHc-CCc
Q 017726 277 RHRRLGKATRLAVEAW-GLK 295 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~~ 295 (367)
+..+++..+.+.|++. .+.
T Consensus 268 ~~~~na~~~a~~L~~~p~v~ 287 (403)
T PRK07503 268 RHCASAQAVAEWLARHPAVE 287 (403)
T ss_pred HHHHHHHHHHHHHHhCCCcc
Confidence 7789999999999986 443
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-22 Score=183.17 Aligned_cols=311 Identities=14% Similarity=0.073 Sum_probs=219.8
Q ss_pred CCCCCCcccccCCCCCChHHHHHHHccCCCCCCC----CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHc
Q 017726 4 MYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRS----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN 79 (367)
Q Consensus 4 ~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~ 79 (367)
.++-+|.|+-...-+.+-+.+.+++.++.....+ .+......++++.|++++|.++ .++.++|..|+..++.+
T Consensus 105 l~FsSndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~e~---all~sSGy~AN~~~i~a 181 (476)
T PLN02955 105 LLFSGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKED---CLVCPTGFAANMAAMVA 181 (476)
T ss_pred EEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHCCCc---EEEECChHHHHHHHHHH
Confidence 4456777888887777888888999887654222 2445778899999999999776 45668889999888876
Q ss_pred cC--------------CCCCeEEEEeCCcchHHHHHHHHHh----CCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEE
Q 017726 80 TL--------------SPGDRIISFLIGQFSLLWIDQQQRL----NFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAI 141 (367)
Q Consensus 80 ~~--------------~~gd~vl~~~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv 141 (367)
+. .+++.|+.....|.|.. ..++.. ++++..++.+ |+++|+++++... .+.++|
T Consensus 182 L~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~--dG~~ls~~~~~a~~~~f~HN-----D~~~Le~~L~~~~-~~~~~V 253 (476)
T PLN02955 182 IGSVASLLAASGKPLKNEKVAIFSDALNHASII--DGVRLAERQGNVEVFVYRHC-----DMYHLNSLLSSCK-MKRKVV 253 (476)
T ss_pred HhhccccccccccccCCCCcEEEEeccchHHHH--HHHHhccccCCceEEEeCCC-----CHHHHHHHHHhCC-CCceEE
Confidence 52 34445555444455433 333333 4666666655 8999999997654 345788
Q ss_pred EEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceee---------ccccccceEEEecCCCcccCCCcceee
Q 017726 142 CIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF---------RMDEWGIDVALTGSQKALSLPTGMGIV 212 (367)
Q Consensus 142 ~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~---------~~~~~~~d~~~~s~~K~~~g~~g~g~~ 212 (367)
++....++.|.+.|+++|.++|++ +|+++++|++|+.+.+.- ... ...|+++.+++|.+ |..| |++
T Consensus 254 v~EgV~SmdGdiapL~eL~~L~~~--~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~-~di~ii~~TLsKA~-G~~G-Gfi 328 (476)
T PLN02955 254 VTDSLFSMDGDFAPMEELSQLRKK--YGFLLVIDDAHGTFVCGENGGGVAEEFNCE-ADVDLCVGTLSKAA-GCHG-GFI 328 (476)
T ss_pred EEeCCCCCCCCcCCHHHHHHHHHH--cCcEEEEcccccCceecCCCCcHHHHhCCC-CCCcEEEEeCccch-hccC-cee
Confidence 888889999999999999999999 999999999998765421 111 25789999999998 4665 899
Q ss_pred eeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc
Q 017726 213 CASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 292 (367)
++++++++.+.... ..+.+ ....++....+..++++.+... +..+++++++.+++++. .
T Consensus 329 ~gs~~~~~~l~~~~-~~~if---------------Stalpp~~aaa~laal~l~~~~--~~~r~~L~~n~~~fr~~---~ 387 (476)
T PLN02955 329 ACSKKWKQLIQSRG-RSFIF---------------STAIPVPMAAAAYAAVVVARKE--KWRRKAIWERVKEFKAL---S 387 (476)
T ss_pred ecHHHHHHHHHHhC-CCCee---------------cccccHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHh---c
Confidence 99998887776432 12122 1235555556677777776554 35677888888888873 3
Q ss_pred CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC---CCcEEEEeecCCCCHHHHH
Q 017726 293 GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 293 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~---~~~~iRi~~~~~~~~~~~~ 360 (367)
|+.+. .+++.+.+++.....++.++|.++ ||.+.+...|. ....+||++...++++|+.
T Consensus 388 G~~~~--------sPI~pI~ig~~~~a~~~~~~L~~~-Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId 449 (476)
T PLN02955 388 GVDIS--------SPIISLVVGNQEKALKASRYLLKS-GFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVK 449 (476)
T ss_pred CCCCC--------CCEEEEEeCCHHHHHHHHHHHHHC-CCEEEEECCCCCCCCCceEEEeeCCCCCHHHHH
Confidence 65431 346667775555567789999765 99998765443 2346999998888776654
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.8e-23 Score=167.37 Aligned_cols=330 Identities=13% Similarity=0.145 Sum_probs=228.3
Q ss_pred cccccCCCC--CChHHHHHHHccCCCCCCCCc------H----HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 017726 10 NHLFVPGPV--HIPDQVIRAMNRNNEDYRSPA------V----PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL 77 (367)
Q Consensus 10 ~~~~~~~p~--~~~~~v~~a~~~~~~~~~~~~------~----~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~ 77 (367)
.++..|=.. -++++..+++.+.++.+.--+ . .+-...+.+.+++++|.+. +-+|+|+.++-..++
T Consensus 17 ~iNv~PiQrGGiLt~eArkal~E~gDGYSvCD~C~~Grldei~kPpI~~F~~dlaeFlg~D~---~R~t~GARe~KfavM 93 (382)
T COG1103 17 FINVNPIQRGGILTEEARKALLEWGDGYSVCDFCLEGRLDEITKPPIKDFLEDLAEFLGMDE---VRVTAGAREAKFAVM 93 (382)
T ss_pred ccccChhhccCcCCHHHHHHHHHhcCCcchhhhhccCccccccCCcHHHHHHHHHHHhCCce---eeecccchhhHHHHH
Confidence 345555322 468889999999776533111 0 1224567777999999876 679999999999999
Q ss_pred HccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhccC---CCCccEEEEEecCCCccc
Q 017726 78 TNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESD--WGEGAKLDVLASKLAADT---AHTIKAICIVHNETATGV 152 (367)
Q Consensus 78 ~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~e~l~~~i~~~~---~~~~~lv~~~~~~n~tG~ 152 (367)
.+++.+||.|++....|++.. .++++.|.++..||.. ++..+++|...+.|++.. ...+.+.+++++....|.
T Consensus 94 hal~~~gd~vV~D~~aHYtty--vAAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGN 171 (382)
T COG1103 94 HALCKEGDWVVVDSLAHYTTY--VAAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGN 171 (382)
T ss_pred HHhccCCCEEEEcCcchHHHH--HHHHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCC
Confidence 999999999999988888865 4589999999999954 245788888777776632 145789999999999999
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceee
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF 232 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~ 232 (367)
+.|.+++.++|++ +|++++..++|..|.++++..+.++||++.|+||.++....+|++.++.++.+.........+-.
T Consensus 172 l~Dakkva~ic~e--~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~V~r~Sg~~~~~ 249 (382)
T COG1103 172 LADAKKVAKICRE--YGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASAPIGVLAMSEEWAEIVLRRSGRAFPK 249 (382)
T ss_pred chhhHHHHHHHHH--cCCceEeecceeeccccccccccCCCEEEecCccchhccCCeeEEeehhHHHHHHHhhccccccc
Confidence 9999999999999 99999999999999999999999999999999999987666899999999987765432111100
Q ss_pred chHHHHHHhh-cCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEE
Q 017726 233 DWKDYIKFYN-LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTA 310 (367)
Q Consensus 233 ~~~~~~~~~~-~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~ 310 (367)
+..+ -|....+.+-+..+++.....+.... ...-.+++++|.+.|+++ |+...+..+- ...++.
T Consensus 250 ------KEvellGCT~rGapivTlmASfP~V~eRVkr------WdeEv~kaR~fv~elEkigg~~qlG~rPk--~HdLm~ 315 (382)
T COG1103 250 ------KEVELLGCTVRGAPIVTLMASFPHVVERVKR------WDEEVEKARWFVAELEKIGGVKQLGERPK--NHDLMK 315 (382)
T ss_pred ------ceeeeecccccCchHHHHHhcCHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhHHHhCCCCc--ccceee
Confidence 1111 12212333333333333333333222 234467888999999999 6888775442 333566
Q ss_pred EEcCCCC--------CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCC-CHHHHHHhhh
Q 017726 311 VIVPSHI--------NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHL-NEVMFNFQLL 364 (367)
Q Consensus 311 ~~~~~~~--------~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~-~~~~~~~~~l 364 (367)
|..|.-. ..--|.+.|+++ ||. |..+....+|.+|.++.. ++.+....++
T Consensus 316 Fetp~f~eIakk~~r~gyFlY~ELK~R-gI~---GI~~G~Tk~~K~svyGl~~Eqve~V~~af 374 (382)
T COG1103 316 FETPVFHEIAKKHKRKGYFLYEELKKR-GIH---GIQPGQTKYFKLSVYGLSWEQVEYVVDAF 374 (382)
T ss_pred ecCchHHHHHHhCcCCceeeHHHHHhc-Ccc---ccccCceeEEEEEeecCCHHHHHHHHHHH
Confidence 6664210 111266667554 442 233333467999988744 3344433333
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.6e-23 Score=175.83 Aligned_cols=311 Identities=17% Similarity=0.174 Sum_probs=227.4
Q ss_pred CcccccCCCCCChHHHHHHHccCCCC--------CCCC---cHH-HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNED--------YRSP---AVP-ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESA 76 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~--------~~~~---~~~-~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~ 76 (367)
+.+.+++.---+++.|++++-....+ .++| .+. ....-+.++..++||++..+ +-..||+.|+..+
T Consensus 27 ~~ieLIASEN~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~an--VQPhSGs~AN~av 104 (413)
T COG0112 27 EHIELIASENFTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYAN--VQPHSGSQANQAV 104 (413)
T ss_pred hceeeeeccccCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCccc--cCCCCchHHHHHH
Confidence 45667777778899999988764321 2222 233 44445688889999999765 5557889999999
Q ss_pred HHccCCCCCeEEEEeCCcchHHHHH-HHHHhC--CceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 77 LTNTLSPGDRIISFLIGQFSLLWID-QQQRLN--FNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 77 ~~~~~~~gd~vl~~~~~~~~~~~~~-~~~~~g--~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
+.++++|||+|+-.+..+.++.... -....| .+.+..+++. ++.+|.|++++.+.+ .|||+|++-. +-.-.
T Consensus 105 ~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e---~kPK~ii~G~--SaY~r 179 (413)
T COG0112 105 YLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKE---VKPKLIIAGG--SAYSR 179 (413)
T ss_pred HHHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeEecccccccCccCHHHHHHHHHH---hCCCEEEECc--ccccc
Confidence 9999999999999887666653111 011122 4555566663 478999999999998 5889998754 33445
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCCcceeeeeCH-HHHHHhccCC
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASP-KALEASKTAK 226 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~-~~~~~~~~~~ 226 (367)
..|.++++++|++ .|+++++|.+|-+|.. +-++. .+|++++|+||+|.||+| |++..++ ++.+++....
T Consensus 180 ~id~~~~reIad~--VGA~L~~DmAHiaGLVA~G~~p~P~~--~AdvVTtTTHKTlrGPrG-G~Il~~~eel~kkin~aV 254 (413)
T COG0112 180 PIDFKRFREIADE--VGAYLMVDMAHVAGLIAGGVHPNPLP--HADVVTTTTHKTLRGPRG-GIILTNDEELAKKINSAV 254 (413)
T ss_pred ccCHHHHHHHHHH--hCceEEehHHHHHHHHhcccCCCCCC--ccceEeCCcccCCCCCCc-eEEEeccHHHHHHhhhhc
Confidence 6799999999999 9999999999965432 33333 489999999999999998 8888875 7788777643
Q ss_pred CCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCC
Q 017726 227 SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSD 306 (367)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 306 (367)
.+. . .+.|....+++...++....+.+.++-.++..+|++.|.+.|.+.|+++++... .+
T Consensus 255 FPg---------------~--qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~~vvsGgT---dn 314 (413)
T COG0112 255 FPG---------------L--QGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGFKVVSGGT---DN 314 (413)
T ss_pred CCc---------------c--CCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCCeEecCCc---cc
Confidence 321 1 223777778899999999999888999999999999999999999999998532 34
Q ss_pred ceEEEEcC-CCCCHHHHHHHHHhhCCeEEccC---CC---CCCCcEEEEeecC
Q 017726 307 TVTAVIVP-SHINSSEIVRRAWQRYNLSLGLG---LN---KVAGKVFRIGHLG 352 (367)
Q Consensus 307 ~~~~~~~~-~~~~~~~l~~~L~~~~gv~v~~g---~~---~~~~~~iRi~~~~ 352 (367)
+++.+++. ++.+.++....| ++.||.+--. ++ +..++.||||...
T Consensus 315 Hl~lVDl~~~~~~Gk~ae~~L-~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa 366 (413)
T COG0112 315 HLVLVDLRSKGLTGKKAEAAL-ERAGITVNKNAIPFDPESPFVTSGIRIGTPA 366 (413)
T ss_pred eEEEEEcccCCCCHHHHHHHH-HHcCEeeccCCCCCCCCCCCCCccceeccHH
Confidence 45556663 356777776666 6679988522 11 3345669998743
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=181.82 Aligned_cols=312 Identities=18% Similarity=0.155 Sum_probs=201.9
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCC--------C---CCcH-HHHHHHHHHHHHHHhcCCCCce--EEecCChhHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDY--------R---SPAV-PALTKTLLEDIKKIFKTTSGTP--FLIPTTGTGAWE 74 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~--------~---~~~~-~~~~~~~~~~la~~~~~~~~~~--v~~~~ggt~al~ 74 (367)
+.+.++|.--.+++.+++++.....+. + +..+ ..+..-++++++++|++++.++ -+=.-||+.|+.
T Consensus 21 ~~l~LiaSEN~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~ 100 (399)
T PF00464_consen 21 STLNLIASENYMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANL 100 (399)
T ss_dssp HSEE-CTT-----HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHH
T ss_pred cCccccCcccccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHH
Confidence 456788888889999999988743321 1 1223 3444446788899999984322 245568999999
Q ss_pred HHHHccCCCCCeEEEEeCCcchHH---HH-HH----HHHhCCceEEEeCC-CCCCCCHHHHHHHHhccCCCCccEEEEEe
Q 017726 75 SALTNTLSPGDRIISFLIGQFSLL---WI-DQ----QQRLNFNVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIVH 145 (367)
Q Consensus 75 ~~~~~~~~~gd~vl~~~~~~~~~~---~~-~~----~~~~g~~~~~v~~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~ 145 (367)
.++.++++|||+|+..+..+.++. .. .. +.....+....+++ +.+.+|.|++++.+++ .+||+|++..
T Consensus 101 av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~---~kPklIi~G~ 177 (399)
T PF00464_consen 101 AVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKE---HKPKLIICGA 177 (399)
T ss_dssp HHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHH---H--SEEEEE-
T ss_pred HHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhh---cCCCEEEECc
Confidence 999999999999999988654432 11 00 12234667777777 5678999999999997 5789999876
Q ss_pred cCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccC-----ceeeccccccceEEEecCCCcccCCCcceeeeeC-----
Q 017726 146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSIC-----AIDFRMDEWGIDVALTGSQKALSLPTGMGIVCAS----- 215 (367)
Q Consensus 146 ~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~-----~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~----- 215 (367)
-.+ -...|.++++++|++ .|+++++|.+|..| ..+-++. ++|++++|+||+|.||.| |++..+
T Consensus 178 S~y--~~~~d~~~~reIad~--vga~l~~D~sH~~GLIa~g~~~~P~~--~ADvvt~sThKtl~GPrg-giI~~~~~~~~ 250 (399)
T PF00464_consen 178 SSY--PRPIDFKRFREIADE--VGAYLMADISHIAGLIAGGLFPNPFP--YADVVTGSTHKTLRGPRG-GIILTNKGSKN 250 (399)
T ss_dssp SST--SS---HHHHHHHHHH--TT-EEEEE-TTTHHHHHTTSS--GCC--TSSEEEEESSGGG-SSS--EEEEES-SEEE
T ss_pred hhc--cCccCHHHHHHHHHh--cCcEEEecccccccceehheecCccc--cceEEEeeccccccccCc-eEEEEcCCccc
Confidence 443 345789999999999 99999999999654 3344554 489999999999999997 999988
Q ss_pred ---------HHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Q 017726 216 ---------PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATR 286 (367)
Q Consensus 216 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~ 286 (367)
+++.+++.....+ +. ...+....++++..++..+.....++-.++..+|++.|.
T Consensus 251 ~~~~~~~~~~~l~~~I~~avfP---------------~~--qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La 313 (399)
T PF00464_consen 251 VDKKGKEIDEELAEKIDSAVFP---------------GL--QGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALA 313 (399)
T ss_dssp E-TTS-EEEHHHHHHHHHHHTT---------------TT---SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccHHHHHHHhccccCC---------------Cc--ccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 6777766643222 11 223667777888888888766556788999999999999
Q ss_pred HHHHHcCCccccCCCccCCCceEEEEcC-CCCCHHHHHHHHHhhCCeEEcc----CCC-CCCCcEEEEeec
Q 017726 287 LAVEAWGLKNCTQKEEWFSDTVTAVIVP-SHINSSEIVRRAWQRYNLSLGL----GLN-KVAGKVFRIGHL 351 (367)
Q Consensus 287 ~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~gv~v~~----g~~-~~~~~~iRi~~~ 351 (367)
+.|.+.|+.++... ..++++++++. .+++..+..+.| ++.||.+.. +.. +..++.+|||..
T Consensus 314 ~~L~~~G~~v~~gg---Td~H~vlvd~~~~~~~g~~a~~~L-e~~gI~vnkn~iP~d~~~~~~sGlRlGT~ 380 (399)
T PF00464_consen 314 EALQERGFKVVTGG---TDNHQVLVDLRSFGIDGKEAEKAL-EEAGIIVNKNTIPGDRSPFVPSGLRLGTP 380 (399)
T ss_dssp HHHHHTT-EEGGGS----SSSEEEEEGGGGTS-HHHHHHHH-HHTTEE-EEE--TTTSTTTT-SEEEEESH
T ss_pred HHHhhCCcEEEECC---CCCCeEEEEecccccchHHHHHHH-HhcCeeecccccCCCCCCCCCCEEEECCH
Confidence 99999999998743 45667888883 356777877777 577998853 221 233467999973
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=184.30 Aligned_cols=282 Identities=17% Similarity=0.120 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.....++++.++++.|.+. . +++++|+.++..++ .++.+||+|+++++.|.+.. +...+...|++++.++..
T Consensus 49 ~p~~~~Le~~lA~l~g~~~--~-~~~~sG~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-- 122 (377)
T PRK07671 49 NPTRAALEELIAVLEGGHA--G-FAFGSGMAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTS-- 122 (377)
T ss_pred ChHHHHHHHHHHHHhCCCc--e-EEeCCHHHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECCC--
Confidence 4667899999999999765 3 55677788887655 56889999999999877543 344566789999888743
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ +++|+|++++|+||+|.+.|+++|.++|++ +|+++++|++++.+...-+ ...++|++++|
T Consensus 123 ---d~~~l~~ai~----~~tklV~le~P~NPtg~~~dl~~I~~la~~--~g~~lvvD~a~~~~~~~~p-~~~g~Divv~S 192 (377)
T PRK07671 123 ---NLEEVEEAIR----PNTKAIYVETPTNPLLKITDIKKISTIAKE--KGLLTIVDNTFMTPYWQSP-ISLGADIVLHS 192 (377)
T ss_pred ---CHHHHHHhcC----CCCeEEEEECCCCCCCcccCHHHHHHHHHH--cCCEEEEECCCCccccCCh-hhhCCeEEEec
Confidence 7899999997 467999999999999999999999999999 9999999999875432222 24578999999
Q ss_pred CCCcccCCCc--ceeeee-CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHH
Q 017726 199 SQKALSLPTG--MGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~ 275 (367)
++|+++|+.+ .|++++ ++++.+++...+ . ..|. ..+... .+.++.-+ .-+..++
T Consensus 193 ~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~-------------~-~~g~----~~~~~~---a~l~~~~l--~tl~~R~ 249 (377)
T PRK07671 193 ATKYLGGHSDVVAGLVVVNSPELAEDLHFVQ-------------N-STGG----ILGPQD---SWLLLRGL--KTLGIRM 249 (377)
T ss_pred CcccccCCccceeEEEEeCcHHHHHHHHHHH-------------H-hhcC----CCCHHH---HHHHHcCc--ChHHHHH
Confidence 9999987754 366666 456666554321 0 0111 122211 11111111 1155678
Q ss_pred HHHHHHHHHHHHHHHHc-CC-ccccCC----Cc--------cCCCceEEEEcCCCC-CHHHHHHHHHhhCCeEEccCCC-
Q 017726 276 ERHRRLGKATRLAVEAW-GL-KNCTQK----EE--------WFSDTVTAVIVPSHI-NSSEIVRRAWQRYNLSLGLGLN- 339 (367)
Q Consensus 276 ~~~~~~~~~l~~~L~~~-g~-~~~~~~----~~--------~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~v~~g~~- 339 (367)
++.++++..+.+.|++. ++ .++-|. +. ...+.++.|.+ .+. ....|++.|. -..+.+.-|-.
T Consensus 250 ~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~-~~~~~~~~f~~~l~-l~~~~~s~G~~~ 327 (377)
T PRK07671 250 EEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDV-GSEETANKVLERLQ-YFTLAESLGAVE 327 (377)
T ss_pred HHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEe-CCHHHHHHHHHhCC-cceEccCCCCCC
Confidence 88899999999999986 43 222221 00 12356888988 331 1233444432 11112211110
Q ss_pred -----C-----------------CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 340 -----K-----------------VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 340 -----~-----------------~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
+ ..++.||+| .|-++.+|++.++-
T Consensus 328 sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~s-vGlE~~~dl~~dl~ 373 (377)
T PRK07671 328 SLISIPSQMTHASIPADRRKELGITDGLIRIS-VGIEDGEDLIEDLA 373 (377)
T ss_pred eEeECCCccccccCCHHHHHhcCCCCCeEEEE-eccCCHHHHHHHHH
Confidence 0 113469998 58788888876653
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.5e-23 Score=188.31 Aligned_cols=159 Identities=14% Similarity=0.095 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.+...++++.++++.|.+. .++++||++|+.+++.+++.+||+|+++...|.+.. +...++..|++++.++.+
T Consensus 63 ~p~~~~le~~lA~l~g~~~---av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-- 137 (433)
T PRK08134 63 NPTVAVLEERVAALEGGVG---AIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPG-- 137 (433)
T ss_pred ChHHHHHHHHHHHHhCCCc---EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCC--
Confidence 3568899999999999765 588899999999999888999999999998887653 233456689999999864
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ ++||+|++.+++||+|.+.|+++|.++|++ +|+++++|++++.+....+. ..++|++++|
T Consensus 138 ---d~~~l~~~i~----~~TklV~~e~~~np~g~v~Di~~I~~la~~--~gi~livD~t~a~~~~~~pl-~~GaD~vv~S 207 (433)
T PRK08134 138 ---DIDGWRAAIR----PNTRLLFGETLGNPGLEVLDIPTVAAIAHE--AGVPLLVDSTFTTPYLLRPF-EHGADLVYHS 207 (433)
T ss_pred ---CHHHHHHhcC----CCCeEEEEECCCcccCcccCHHHHHHHHHH--cCCEEEEECCCcccccCCch-hcCCCEEEec
Confidence 7999999998 577999999999999999999999999999 99999999999877665444 5689999999
Q ss_pred CCCcccCCCc-ceeeee
Q 017726 199 SQKALSLPTG-MGIVCA 214 (367)
Q Consensus 199 ~~K~~~g~~g-~g~~~~ 214 (367)
.||+++|+.. +|.+++
T Consensus 208 ~tK~l~g~g~~~gG~v~ 224 (433)
T PRK08134 208 ATKFLGGHGTAIGGVLV 224 (433)
T ss_pred cccccCCCCCceEEEEE
Confidence 9999965432 344433
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-22 Score=182.96 Aligned_cols=284 Identities=14% Similarity=0.069 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
....+++++.++++.|.+ .+++++||++|+..++.+++.+||+|+++++.|.+.. +...+...|+++..++..
T Consensus 64 ~pt~~~Le~~lA~l~g~~---~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~-- 138 (394)
T PRK07050 64 TPTSLALAQRLAEIEGGR---HALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPL-- 138 (394)
T ss_pred CHHHHHHHHHHHHHhCCC---eEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCC--
Confidence 355789999999999954 4889999999999999999999999999999887654 334567789999888643
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
+.++++++++ +++|+|++++|+||+|.+.|+++|.++|++ +|+++++|++++.+.. ......|+|+++.|
T Consensus 139 ---~~~~l~~~i~----~~tklV~le~p~Np~~~~~di~~I~~ia~~--~gi~livD~a~a~~~~-~~~l~~GaDi~v~S 208 (394)
T PRK07050 139 ---IGAGIADLIQ----PNTRLIWLEAPGSVTMEVPDVPAITAAARA--RGVVTAIDNTYSAGLA-FKPFEHGVDISVQA 208 (394)
T ss_pred ---CHHHHHHhcC----CCCeEEEEECCCCCCccHhhHHHHHHHHHH--cCCEEEEECCcccccc-cCHHHcCCeEEEEE
Confidence 4578888887 577999999999999999999999999999 9999999999987654 33334578999999
Q ss_pred CCCcccCCCc--ceeeee-CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHH
Q 017726 199 SQKALSLPTG--MGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~ 275 (367)
.+|+++|..+ .|.++. ++++.+++...+ ...|. +.+.. ..+.++..+. .+..+.
T Consensus 209 ~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~--------------~~~G~----~~~~~---~a~l~lr~l~--tl~~Rl 265 (394)
T PRK07050 209 LTKYQSGGSDVLMGATITADAELHAKLKLAR--------------MRLGI----GVSAD---DCSLVLRGLP--SLQVRL 265 (394)
T ss_pred CCceecCCCCeeEEEEEECCHHHHHHHHHHH--------------HhcCC----CCCHH---HHHHHHcCCC--cHHHHH
Confidence 9999987654 365554 667766665321 11121 12221 1122222111 255577
Q ss_pred HHHHHHHHHHHHHHHHc-CCc-cccCC----C--------ccCCCceEEEEcCCCC---CHHHHHHHHHhhCCeEEccCC
Q 017726 276 ERHRRLGKATRLAVEAW-GLK-NCTQK----E--------EWFSDTVTAVIVPSHI---NSSEIVRRAWQRYNLSLGLGL 338 (367)
Q Consensus 276 ~~~~~~~~~l~~~L~~~-g~~-~~~~~----~--------~~~~~~~~~~~~~~~~---~~~~l~~~L~~~~gv~v~~g~ 338 (367)
++..+++..+.+.|++. ++. ++-|. + ....+.++.|.+..+. +.+++++.|+ ..++.+.-|-
T Consensus 266 ~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~~l~-~~~~~~s~G~ 344 (394)
T PRK07050 266 AAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQVDAFVEALE-LFAIGWSWGG 344 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCCHHHHHHHHHcCC-CCeeccccCC
Confidence 78888888999999986 443 22111 0 0124567888884332 3456666664 3454444331
Q ss_pred -C----C------------CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 339 -N----K------------VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 339 -~----~------------~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
. + ..++.||+| .|-++.+|+..++-
T Consensus 345 ~~sl~~~~~~~~~~~~~~~~~~~~iR~s-vGlE~~~dl~~dl~ 386 (394)
T PRK07050 345 ACSLAMPYDVASMRTAKWPHRGTLVRLY-IGLEDEADLIADLE 386 (394)
T ss_pred ccceEeeCcccccchhhcCCCCCEEEEE-eCcCCHHHHHHHHH
Confidence 1 1 123569998 57777777776653
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=186.89 Aligned_cols=159 Identities=18% Similarity=0.180 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
......+++.++++.|.+. .++++||+.|+..++.+++.+||+|+++++.|.+.. +...++..|++++.++..
T Consensus 63 ~p~~~~Le~~lA~leg~~~---al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~-- 137 (431)
T PRK08248 63 NPTTDVFEKRIAALEGGIG---ALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPS-- 137 (431)
T ss_pred CchHHHHHHHHHHHhCCCc---EEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCC--
Confidence 3557789999999999643 578899999999999888999999999998776653 456678899999999763
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ +++++|++++|+||||.+.|+++|.++|++ +|+++|+|++++.+....+. ++++|+++.|
T Consensus 138 ---d~e~l~~ai~----~~tklV~l~sp~NPtG~v~di~~I~~la~~--~gi~vIvD~t~a~~~~~~pl-~~gaDivv~S 207 (431)
T PRK08248 138 ---DPENFEAAIT----DKTKALFAETIGNPKGDVLDIEAVAAIAHE--HGIPLIVDNTFASPYLLRPI-EHGADIVVHS 207 (431)
T ss_pred ---CHHHHHHhcC----CCCeEEEEECCCCCCCcccCHHHHHHHHHH--cCCEEEEeCCCCccccCChh-HcCCCEEEEc
Confidence 7999999997 467999999999999999999999999999 99999999998754333333 5689999999
Q ss_pred CCCcccCCCc-ceeeee
Q 017726 199 SQKALSLPTG-MGIVCA 214 (367)
Q Consensus 199 ~~K~~~g~~g-~g~~~~ 214 (367)
.+|+++|+.. +|.+++
T Consensus 208 ~tK~lgg~g~~~Gg~v~ 224 (431)
T PRK08248 208 ATKFIGGHGTSIGGVIV 224 (431)
T ss_pred CccccCCCCCceEEEEE
Confidence 9999976542 455554
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=186.82 Aligned_cols=290 Identities=13% Similarity=0.110 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH-H-HHHHHHhCCceEEEeCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL-W-IDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~-~-~~~~~~~g~~~~~v~~~~~~ 119 (367)
.....+++.++++.|.+. +++++||++|+..++.+++++||.|+++.|.|..+. . ...++..|++++.++..
T Consensus 83 Pt~~~Le~~lA~leg~~~---~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~~--- 156 (427)
T PRK07049 83 PNSEIVEDRLAVYEGAES---AALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFADG--- 156 (427)
T ss_pred cCHHHHHHHHHHHhCCCc---EEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeCC---
Confidence 446789999999998553 677799999999999999999999999999887764 2 33456678887666522
Q ss_pred CCCHHHHHHHHhccC-CCCccEEEEEecCCCccccccHHHHHHHHHhcC----CCcEEEEeeeeccCceeeccccccceE
Q 017726 120 GAKLDVLASKLAADT-AHTIKAICIVHNETATGVTNNLSKVRKLLDEYR----HPALFLVDGVSSICAIDFRMDEWGIDV 194 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~-~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~----~~~~vi~D~~~~~~~~~~~~~~~~~d~ 194 (367)
.|++++++++.+.. .+++|+|++++|+||||.++|++++.++++... +++++++|+++......-+. ..++|+
T Consensus 157 -~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~pl-~~g~di 234 (427)
T PRK07049 157 -LSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKPL-EHGADL 234 (427)
T ss_pred -CCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCcc-ccCCCE
Confidence 46788887775321 146899999999999999999999999987621 58999999997543221122 346899
Q ss_pred EEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChH
Q 017726 195 ALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLE 272 (367)
Q Consensus 195 ~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~ 272 (367)
++.|++|+++|..| +|+++.++++++++..... ..| .+.+......+..+++. +.
T Consensus 235 vv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~--------------~~g----~~ls~~~a~l~~r~L~t-----l~ 291 (427)
T PRK07049 235 SVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRS--------------AIG----TQLDPHSCWMLGRSLET-----LV 291 (427)
T ss_pred EEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHH--------------hcC----CCCCHHHHHHHHcCCCh-----HH
Confidence 99999999986555 4999999988877753211 001 12444332333333322 55
Q ss_pred HHHHHHHHHHHHHHHHHHHc-CCccc-cC-----CCc---------cCCCceEEEEcCCCC-CHHHHHHHHHhhCCeEEc
Q 017726 273 NVIERHRRLGKATRLAVEAW-GLKNC-TQ-----KEE---------WFSDTVTAVIVPSHI-NSSEIVRRAWQRYNLSLG 335 (367)
Q Consensus 273 ~~~~~~~~~~~~l~~~L~~~-g~~~~-~~-----~~~---------~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~v~ 335 (367)
.++++..+++..+.+.|++. ++..+ -| +.. ...+.++.|.+..+. ....|++.|+ -..+.+.
T Consensus 292 ~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~-l~~~~~s 370 (427)
T PRK07049 292 LRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKGGQAAAFRFLNALQ-IFKLAVS 370 (427)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcCCHHHHHHHHHcCc-ccEEccc
Confidence 66777799999999999987 54321 11 110 123568889883221 1334555442 2222222
Q ss_pred cC-CC-----C-----------------CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 336 LG-LN-----K-----------------VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 336 ~g-~~-----~-----------------~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
-| .. + ..++.||+| .|-++.+|+..++-
T Consensus 371 lG~~~sli~~~~~~~h~~~~~~~~~~~gi~~~liR~s-vGlE~~~dl~~dl~ 421 (427)
T PRK07049 371 LGGTESLASHPASMTHSGVPADVRERIGVLESTIRLS-IGIEHPDDLIADLA 421 (427)
T ss_pred CCCCCceeeCCCccccccCCHHHHHhcCCCcCeEEEE-eCcCCHHHHHHHHH
Confidence 22 11 0 113469998 57777787776553
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=197.07 Aligned_cols=313 Identities=12% Similarity=0.026 Sum_probs=215.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHH---HHHccC-----CCCCeEEEEeCCcchHHHHHHHHHhCCceE
Q 017726 40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWES---ALTNTL-----SPGDRIISFLIGQFSLLWIDQQQRLNFNVD 111 (367)
Q Consensus 40 ~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~---~~~~~~-----~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~ 111 (367)
..+...++.++++++.|.+.. -+..++|+.+-.. +++... ...++|+++...|.++. ..+...|++++
T Consensus 528 ~lq~i~elq~~l~eltGmd~~--Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnP--asa~~~G~~Vv 603 (939)
T TIGR00461 528 YQELIAQLEKWLCSITGFDAI--SLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNP--ASAAMAGMQVV 603 (939)
T ss_pred HHHHHHHHHHHHHHHHCCCCc--ccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCH--HHHHHCCCEEE
Confidence 567888999999999999963 3677777765553 333211 13356888888887764 33677899999
Q ss_pred EEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc-HHHHHHHHHhcCCCcEEEEeeeeccCc-eeecccc
Q 017726 112 VVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN-LSKVRKLLDEYRHPALFLVDGVSSICA-IDFRMDE 189 (367)
Q Consensus 112 ~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~-~~~i~~~~~~~~~~~~vi~D~~~~~~~-~~~~~~~ 189 (367)
.++++.++.+|+++|+++++++. +++++|++++|+| +|.+.| +++|+++||+ +|.++++|+++..+. ...+..+
T Consensus 604 ~V~~d~~G~iDle~L~~~i~~~~-~~taaV~iT~pst-~G~~e~~I~eI~~iah~--~G~~v~VDgAq~~al~~l~~Pg~ 679 (939)
T TIGR00461 604 PVNCDQDGNIDLVDLKNKAEQHG-DELAAVMVTYPST-HGVFEPTIQHACDIVHS--FGGQVYLDGANMNAQVGLTSPGD 679 (939)
T ss_pred EeccCCCCCcCHHHHHHHHhhcC-CceEEEEEEeCCc-CceecccHHHHHHHHHH--cCCEEEEEecChhhCCCCCCccc
Confidence 99998899999999999998643 4789999999998 799887 9999999999 999999999996633 3334466
Q ss_pred ccceEEEecCCCccc-----CCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCC-ccCCCCcHHHHHHHHHHH
Q 017726 190 WGIDVALTGSQKALS-----LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGT-FWPYTPSIQLLYGLRAAL 263 (367)
Q Consensus 190 ~~~d~~~~s~~K~~~-----g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~al~~al 263 (367)
.++|++++|.||+|+ |++|+|++++++.+...+....... ..+.....+ ..+. ....+.+...+...+..+
T Consensus 680 ~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~-t~d~~greq--~Iga~s~~~~g~a~~~l~a~~yi 756 (939)
T TIGR00461 680 LGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVS-MITGIGGSK--SIGSVSAAPYGSASILPISWMYI 756 (939)
T ss_pred cCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccc-cccCCCCcc--ccccccccccCcHHHHHHHHHHH
Confidence 799999999999998 5667799999988766555332211 011100000 0111 111234555556677777
Q ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC-----CCCHHHHHHHHHhhCCeEEccCC
Q 017726 264 DLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS-----HINSSEIVRRAWQRYNLSLGLGL 338 (367)
Q Consensus 264 ~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~L~~~~gv~v~~g~ 338 (367)
..+..+|++++.+....+++|++++|++ ++++..+........-+.++++. +.+..++.++|.+. |+..-.-.
T Consensus 757 ~~lG~~GL~~~a~~ailnAnYl~~rL~~-~~~~l~~~~~~~~~hEfv~~~~~~~~~~g~~~~dIakrL~d~-G~hapt~~ 834 (939)
T TIGR00461 757 KMMGNEGLPKASVVAILNANYMATRLKD-HYPILFVGTLKHVAHECILDLRPLKAKTGIEAIDVAKRLQDY-GFHAPTLS 834 (939)
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHhhc-cCcccccCCCCceeEEEEEeccchhhhcCCCHHHHHHHHHhC-CeeccccC
Confidence 8888899999999999999999999988 55554432111111235566631 46788999999765 88654311
Q ss_pred CCCCCc-EEEEeecCCCCHHHHHHhhhh
Q 017726 339 NKVAGK-VFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 339 ~~~~~~-~iRi~~~~~~~~~~~~~~~l~ 365 (367)
.+..+. .+|.+-....++.|.+.+++.
T Consensus 835 ~pv~g~lmiepTE~eskeelD~f~~al~ 862 (939)
T TIGR00461 835 FPVPGTLMVEPTESESLEELDRFCDAMI 862 (939)
T ss_pred CccCCeEEEEeeccCCHHHHHHHHHHHH
Confidence 233343 267664334445555555543
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-22 Score=187.33 Aligned_cols=308 Identities=18% Similarity=0.112 Sum_probs=204.4
Q ss_pred ChHHHHHHHccCCCC--CCCC--cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCC
Q 017726 20 IPDQVIRAMNRNNED--YRSP--AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIG 93 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~~~~--~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~ 93 (367)
.++.+.+++.+.... +... ...+...++++.++++++.+. +.+++++||++|+..++..+ ..++++|++.++.
T Consensus 53 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~ 131 (413)
T cd00610 53 NHPEVVEALKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGL-DKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGA 131 (413)
T ss_pred CCHHHHHHHHHHHHhCcCccCcccCCHHHHHHHHHHHHhCCCCC-CEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCC
Confidence 345566666554321 1111 124678899999999998644 35999999999999998865 3678999999998
Q ss_pred cchHHHHHHHHHh-----------CCceEEEeCCC------CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc-
Q 017726 94 QFSLLWIDQQQRL-----------NFNVDVVESDW------GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN- 155 (367)
Q Consensus 94 ~~~~~~~~~~~~~-----------g~~~~~v~~~~------~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~- 155 (367)
|++.......... ..++..++.+. ++..|+++++++++++. .+++++++...++++|.+.+
T Consensus 132 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~vi~~p~~~~~G~~~~~ 210 (413)
T cd00610 132 YHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHP-EEVAAVIVEPIQGEGGVIVPP 210 (413)
T ss_pred cCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCC-CCEEEEEEccccCCCCCccCC
Confidence 8886422211111 12355666552 23347899999988642 35678888888888899887
Q ss_pred ---HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCC
Q 017726 156 ---LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS 227 (367)
Q Consensus 156 ---~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~ 227 (367)
+++|.++|++ +|+++++|++|+.... ..+......|++ +.+|+++++.++|++++++++++.+....
T Consensus 211 ~~~l~~l~~l~~~--~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~~--t~sK~l~~g~~~g~~~~~~~~~~~~~~~~- 285 (413)
T cd00610 211 PGYLKALRELCRK--HGILLIADEVQTGFGRTGKMFAFEHFGVEPDIV--TLGKGLGGGLPLGAVLGREEIMDAFPAGP- 285 (413)
T ss_pred HHHHHHHHHHHHH--cCCEEEEeccccCCCcCcchhhHhhcCCCCCeE--EEcccccCccccEEEEEcHHHHHhhccCC-
Confidence 8999999999 9999999999874311 111122234655 55699986666899999999888761000
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCC--ccccCCCccCC
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGL--KNCTQKEEWFS 305 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~--~~~~~~~~~~~ 305 (367)
.... ..++.+...+++..++++.+.+. ++.++..++.+++++.|+++.. ....... ..
T Consensus 286 -------------~~~~--~t~~~~~~~~~a~~a~l~~l~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~ 345 (413)
T cd00610 286 -------------GLHG--GTFGGNPLACAAALAVLEVLEEE---GLLENAAELGEYLRERLRELAEKHPLVGDVR--GR 345 (413)
T ss_pred -------------CCCC--CCCCcCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhhCCcEEEee--cC
Confidence 0001 13345556667777788887663 4567888889999999888621 2221101 23
Q ss_pred CceEEEEcCCC--------CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 306 DTVTAVIVPSH--------INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 306 ~~~~~~~~~~~--------~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
+.++++.+++. ....++++.|.++ ||.+.++. +..+|+++....+++++
T Consensus 346 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gv~v~~~~----~~~lR~~~~~~~t~~~i 402 (413)
T cd00610 346 GLMIGIELVKDRATKPPDKELAAKIIKAALER-GLLLRPSG----GNVIRLLPPLIITEEEI 402 (413)
T ss_pred ceEEEEEEecCCCcCCcchHHHHHHHHHHHHC-CeEEeecC----CCEEEEECCCcCCHHHH
Confidence 45677777443 3456788888755 99998764 46799987776665544
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-22 Score=185.74 Aligned_cols=281 Identities=14% Similarity=0.120 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 119 (367)
...+++++.++++.+.+. .++++||+.++..++ .++.+||+|+++.+.|.+.. +...+...|++++.++..
T Consensus 133 pt~~aLE~~lA~leg~e~---ai~~~SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~~--- 205 (464)
T PLN02509 133 PTRDALESLLAKLDKADR---AFCFTSGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT--- 205 (464)
T ss_pred HHHHHHHHHHHHHhCCCE---EEEeCcHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCCC---
Confidence 467899999999987543 466678888886555 56899999999999887754 334556789998888642
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecC
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS 199 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~ 199 (367)
|++++++++. +++|+|++++|+||+|.+.|+++|.++|++ +|+++++|++++.+....+. ..++|++++|+
T Consensus 206 --d~e~l~~ai~----~~TklV~lesPsNPtG~i~Dl~~I~~lAk~--~g~~lIVD~A~a~~~~~~pl-~~gaDivv~S~ 276 (464)
T PLN02509 206 --NLDEVAAAIG----PQTKLVWLESPTNPRQQISDIRKIAEMAHA--QGALVLVDNSIMSPVLSRPL-ELGADIVMHSA 276 (464)
T ss_pred --CHHHHHHhCC----cCCeEEEEECCCCCCCCHHHHHHHHHHHHH--cCCEEEEECCccccccCChh-hcCCcEEEecC
Confidence 7899999987 467999999999999999999999999999 99999999998776543332 35799999999
Q ss_pred CCcccCCCc--ceeeeeCHHH-HHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 200 QKALSLPTG--MGIVCASPKA-LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 200 ~K~~~g~~g--~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
+|+++|+.+ .|+++++++. .+++... .+. .+. ..+....+.+...++. ++.+++
T Consensus 277 tK~l~G~gdv~gG~v~~~~~~l~~~~~~~-------------~~~-~g~----~l~p~~A~l~lr~L~t-----L~~R~~ 333 (464)
T PLN02509 277 TKFIAGHSDVMAGVLAVKGEKLAKEVYFL-------------QNS-EGS----GLAPFDCWLCLRGIKT-----MALRIE 333 (464)
T ss_pred cccccCCCccceeEEEeccHHHHHHHHHH-------------HHh-cCC----CcCHHHHHHHHhhhhh-----HHHHHH
Confidence 999987765 5888875543 3332211 000 121 1233222222223333 567788
Q ss_pred HHHHHHHHHHHHHHHc-CCc-cccCC----Cc--------cCCCceEEEEcCCCC-CHHHHHHHHHhhCCeEEccCC-C-
Q 017726 277 RHRRLGKATRLAVEAW-GLK-NCTQK----EE--------WFSDTVTAVIVPSHI-NSSEIVRRAWQRYNLSLGLGL-N- 339 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~~-~~~~~----~~--------~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~v~~g~-~- 339 (367)
+.++++..+.+.|++. .++ +.-|. +. ...+.+++|.+ .+. ....|++.|+ -..+.+.-|- .
T Consensus 334 r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~-~~~~~~~~f~~~l~-l~~~a~slG~~~S 411 (464)
T PLN02509 334 KQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFIT-GSVALSKHLVETTK-YFSIAVSFGSVKS 411 (464)
T ss_pred HHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEe-CCHHHHHHHHHcCC-cceEcccCCCCCc
Confidence 9999999999999986 442 22221 11 12356888887 332 1334444442 2222222221 0
Q ss_pred ----C-----------------CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 340 ----K-----------------VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 340 ----~-----------------~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
+ ...+.||+| .|-++.+|++.++-
T Consensus 412 Li~~p~~~sh~~~~~~~~~~~Gi~~~liRlS-vGlE~~~DLi~Dl~ 456 (464)
T PLN02509 412 LISMPCFMSHASIPAEVREARGLTEDLVRIS-AGIEDVDDLISDLD 456 (464)
T ss_pred eeeCCcccccccCCHHHHHhcCCCCCeEEEE-eccCCHHHHHHHHH
Confidence 0 113569998 57778888776653
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-22 Score=183.05 Aligned_cols=213 Identities=13% Similarity=0.080 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.....++++.++++.|.+. .++++||+.|+.+++ +++.+||+|+++++.|.+.. +...+...|+++..++..
T Consensus 49 ~p~~~~Le~~la~l~g~~~---al~~~SG~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~~-- 122 (380)
T PRK06176 49 NPTRFALEELIADLEGGVK---GFAFASGLAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTS-- 122 (380)
T ss_pred ChhHHHHHHHHHHHhCCCC---EEEECCHHHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCCC--
Confidence 3557899999999999665 355588888998666 46799999999998776653 445677789988888753
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ +++++|++++|+||+|.+.|+++|.++|++ +|+++++|++++.+....+. ..++|++++|
T Consensus 123 ---d~e~l~~ai~----~~t~lV~lesP~Nptg~~~di~~I~~la~~--~gi~vivD~t~a~~~~~~p~-~~gaDivv~S 192 (380)
T PRK06176 123 ---DLSQIKKAIK----PNTKALYLETPSNPLLKITDLAQCASVAKD--HGLLTIVDNTFATPYYQNPL-LLGADIVVHS 192 (380)
T ss_pred ---CHHHHHHhcC----cCceEEEEECCCCCCceecCHHHHHHHHHH--cCCEEEEECCccccccCCcc-ccCCCEEEec
Confidence 7999999987 467999999999999999999999999999 99999999998865432222 4689999999
Q ss_pred CCCcccCCCc--ceeeeeCH-HHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHH
Q 017726 199 SQKALSLPTG--MGIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~ 275 (367)
++|+++|+.. .|+++.++ ++.+++.... + ..|. ..+....+ +....-..+..+.
T Consensus 193 ~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~-------------~-~~G~----~~~~~~~~-----l~~~gl~tl~~R~ 249 (380)
T PRK06176 193 GTKYLGGHSDVVAGLVTTNNEALAQEIAFFQ-------------N-AIGG----VLGPQDSW-----LLQRGIKTLGLRM 249 (380)
T ss_pred CceeccCCccceeeEEEecHHHHHHHHHHHH-------------H-HhcC----CCCHHHHH-----HHHhccCcHHHHH
Confidence 9999987653 37677754 4444443210 0 1121 11221111 1111112256677
Q ss_pred HHHHHHHHHHHHHHHHc
Q 017726 276 ERHRRLGKATRLAVEAW 292 (367)
Q Consensus 276 ~~~~~~~~~l~~~L~~~ 292 (367)
++.++++..+.+.|++.
T Consensus 250 ~~~~~~a~~la~~L~~~ 266 (380)
T PRK06176 250 EAHQKNALCVAEFLEKH 266 (380)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 78888899999999886
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-22 Score=183.72 Aligned_cols=289 Identities=16% Similarity=0.112 Sum_probs=196.5
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCCCC--CCc-----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNEDYR--SPA-----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT 80 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~~~--~~~-----~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~ 80 (367)
+..+.+..|-.++++++++++.+....+. .++ ....+.++++.+++++|.+. .++++|++.|+.+++.+
T Consensus 86 g~v~~tNlg~s~l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Gae~---a~vv~sgtaAl~l~l~~- 161 (464)
T PRK04311 86 GVVLHTNLGRALLSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGAED---ALVVNNNAAAVLLALNA- 161 (464)
T ss_pred ccEEeccCCCCCCCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCCCe---EEEECCHHHHHHHHHHH-
Confidence 35567777888899999999988654322 111 13456799999999999864 56778899999988865
Q ss_pred CCCCCeEEEEeCCcch----HHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCC--cc--c
Q 017726 81 LSPGDRIISFLIGQFS----LLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETA--TG--V 152 (367)
Q Consensus 81 ~~~gd~vl~~~~~~~~----~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~--tG--~ 152 (367)
+.+||+|++++.+++. .++....+..|+++++++.+. ..++++++++++ ++|++|++++++|+ +| .
T Consensus 162 l~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~--~t~~~dle~aI~----~~TklV~~vh~sN~~i~G~~~ 235 (464)
T PRK04311 162 LAAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTN--RTHLRDYEQAIN----ENTALLLKVHTSNYRIEGFTK 235 (464)
T ss_pred hCCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCC--CCCHHHHHHhcC----ccCeEEEEEcCCCccccccCC
Confidence 5799999999876552 234455677899999997643 357899999998 46799999999998 34 5
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccC---------cee--eccccccceEEEecCCCcccCCCcceeeeeCHHHHHH
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSIC---------AID--FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEA 221 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~---------~~~--~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~ 221 (367)
..|+++|.++||+ +|+++++|.+++.. ..+ .+....|+|++++|++|+++||. .|+++++++++++
T Consensus 236 ~~dl~eI~~lak~--~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~-~G~i~g~~~li~~ 312 (464)
T PRK04311 236 EVSLAELAALGKE--HGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQ-AGIIVGKKELIAR 312 (464)
T ss_pred cCCHHHHHHHHHH--cCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCc-eEEEEEcHHHHHH
Confidence 6799999999999 99999999854321 111 12223689999999999998775 6999999999987
Q ss_pred hccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh-----C------hHHHHHHHHHHHHHHHHHHH
Q 017726 222 SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-----G------LENVIERHRRLGKATRLAVE 290 (367)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-----g------~~~~~~~~~~~~~~l~~~L~ 290 (367)
+...... ..+. ..-..+.++.+++..+... + +....++.++++..+.+.|+
T Consensus 313 l~~~~~~----------r~lr--------~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~ 374 (464)
T PRK04311 313 LKKHPLK----------RALR--------VDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALK 374 (464)
T ss_pred HhhchhH----------HHHh--------cchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 7632110 1111 1223335566666643211 1 22334667778888888887
Q ss_pred Hc---C--CccccC--------CCcc-CCCceEEEEcCCCCCHHHHHHHHHh
Q 017726 291 AW---G--LKNCTQ--------KEEW-FSDTVTAVIVPSHINSSEIVRRAWQ 328 (367)
Q Consensus 291 ~~---g--~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~ 328 (367)
+. + +.+... .+.. .....+.+. +.+.+..++.++|++
T Consensus 375 ~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~-~~~~~~~~l~~~lr~ 425 (464)
T PRK04311 375 AALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLT-PKDRSLEALAARLRL 425 (464)
T ss_pred hccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEe-CCCCCHHHHHHHHhc
Confidence 75 2 233332 1111 111223333 346678999999964
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-22 Score=182.66 Aligned_cols=299 Identities=13% Similarity=0.064 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.+...++++.++++.|... .+.++||+.|+.+++.+++.+||+||++.+.|.+.. +...+...|+++..++.
T Consensus 60 nPtv~~lE~~la~leg~~~---av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~--- 133 (432)
T PRK06702 60 NPTLAAFEQKLAELEGGVG---AVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP--- 133 (432)
T ss_pred CcHHHHHHHHHHHHhCCCc---EEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECC---
Confidence 3567899999999999765 567899999999999988999999999998877653 33446778999998864
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
.+|+++++++|+ ++||+|++.+|+||++.+.|+++|.++|++ +|+++++|++.+.+. .....+.|+|+++.|
T Consensus 134 -~~d~~~l~~~I~----~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~--~gi~livD~T~~tP~-~~~pl~~GADIvv~S 205 (432)
T PRK06702 134 -NLTADEIVALAN----DKTKLVYAESLGNPAMNVLNFKEFSDAAKE--LEVPFIVDNTLATPY-LCQAFEHGANIIVHS 205 (432)
T ss_pred -CCCHHHHHHhCC----cCCeEEEEEcCCCccccccCHHHHHHHHHH--cCCEEEEECCCCchh-hCChhhcCCCEEEEc
Confidence 368999999998 467999999999999999999999999999 999999999976432 123345689999999
Q ss_pred CCCcccCCCcc--eeeeeCHHHH--H----Hhcc----CCCCceeec--hHH----HHHHh--hcCCccCCCCcHHHHHH
Q 017726 199 SQKALSLPTGM--GIVCASPKAL--E----ASKT----AKSVRVFFD--WKD----YIKFY--NLGTFWPYTPSIQLLYG 258 (367)
Q Consensus 199 ~~K~~~g~~g~--g~~~~~~~~~--~----~~~~----~~~~~~~~~--~~~----~~~~~--~~~~~~~~~~~~~~~~a 258 (367)
.+|+++|..+. |+++.++.+. . .+.. .....+..+ ... ..... ..|. .++....+.
T Consensus 206 ~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~sp~~a~l 281 (432)
T PRK06702 206 TTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGN----CMSPFNAYI 281 (432)
T ss_pred cccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccC----CCCHHHHHH
Confidence 99999887552 5554333210 0 0000 000000000 000 00001 1121 344422222
Q ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCcccc-CC-Cc------------cCCCceEEEEcCCCC-CHHHH
Q 017726 259 LRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCT-QK-EE------------WFSDTVTAVIVPSHI-NSSEI 322 (367)
Q Consensus 259 l~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~-~~------------~~~~~~~~~~~~~~~-~~~~l 322 (367)
+..+|+ -++.+.++.++|+..+.+.|++. .+..+. |. +. ...+.+++|.+..+. ...+|
T Consensus 282 ~~rgL~-----Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg~~sf~l~~~~~~~~~f 356 (432)
T PRK06702 282 SNIGLE-----TLHLRMERHSENALAVAKWLADHERIEWVNYPGLDSNENYSLAQKYLKKGASGVLTFGIKGGLEAAKEF 356 (432)
T ss_pred HHhccC-----cHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHH
Confidence 222222 26777888899999999999997 544322 21 10 123568899984221 13345
Q ss_pred HHHHHhhCCeEEccC-CC-----C-----------------CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 323 VRRAWQRYNLSLGLG-LN-----K-----------------VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 323 ~~~L~~~~gv~v~~g-~~-----~-----------------~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
++.|+ -..+.+.-| .. + ..++.||+| .|-++.+|+..++-
T Consensus 357 ~~~l~-l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~liRlS-vGlEd~eDLi~Dl~ 419 (432)
T PRK06702 357 IANVK-LATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIRLS-VGIEDVSDIIADLE 419 (432)
T ss_pred HHhCc-cceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeEEEE-eccCCHHHHHHHHH
Confidence 55552 223222222 11 0 013469998 57777777776653
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-22 Score=181.84 Aligned_cols=160 Identities=16% Similarity=0.184 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~ 119 (367)
.+...++++.++++.|... + +.+++|+.|+..++.+++++||+|+++++.|.+.. +...++..|++++.++..
T Consensus 46 ~p~~~~lE~~la~leg~~~--~-v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~--- 119 (397)
T PRK05939 46 TPTTAALEAKITKMEGGVG--T-VCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDAT--- 119 (397)
T ss_pred CHHHHHHHHHHHHHhCCCe--E-EEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCCEEEEECCC---
Confidence 3667899999999999765 3 45567799999999888999999999988776653 224467789999999763
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecC
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS 199 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~ 199 (367)
|+++++++++ +++|+|++++|+||+|.+.|+++|.++|++ +|+++++|++++.+. .++....++|+++.|+
T Consensus 120 --d~e~l~~~l~----~~tklV~vesp~NptG~v~dl~~I~~la~~--~gi~livD~t~a~~~-~~~~~~~gaDivv~S~ 190 (397)
T PRK05939 120 --DVQNVAAAIR----PNTRMVFVETIANPGTQVADLAGIGALCRE--RGLLYVVDNTMTSPW-LFRPKDVGASLVINSL 190 (397)
T ss_pred --CHHHHHHhCC----CCCeEEEEECCCCCCCCHHhHHHHHHHHHH--cCCEEEEECCccccc-ccCccccCCEEEEecC
Confidence 7899999997 577999999999999999999999999999 999999999987653 3455556899999999
Q ss_pred CCcccCCCc-ceeeeeC
Q 017726 200 QKALSLPTG-MGIVCAS 215 (367)
Q Consensus 200 ~K~~~g~~g-~g~~~~~ 215 (367)
+|+++|... +|.++..
T Consensus 191 sK~~~g~g~~igg~v~~ 207 (397)
T PRK05939 191 SKYIAGHGNALGGAVTD 207 (397)
T ss_pred eecccCCCCeEEEEEec
Confidence 999986433 3555443
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-22 Score=175.21 Aligned_cols=290 Identities=16% Similarity=0.159 Sum_probs=203.4
Q ss_pred ChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeEEEEeCCcchHH
Q 017726 20 IPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSLL 98 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl~~~~~~~~~~ 98 (367)
+.+.-++++.+...+.+-.. +....++++.+++++|.+. .+.++|||.|+.+++.++ +.|||.||++...+.+..
T Consensus 13 i~~~e~~~v~~vl~sg~i~~-G~~v~~FE~~~ae~~G~k~---ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATa 88 (374)
T COG0399 13 IGEEELAAVQEVLKSGWLTG-GPFVRRFEQAFAEYLGVKY---AVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATA 88 (374)
T ss_pred cchHHHHHHHHHHHcCCeec-ChHHHHHHHHHHHHhCCCe---EEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHH
Confidence 55666666666544433111 4778899999999999887 577899999999999854 799999999977655542
Q ss_pred HHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeee
Q 017726 99 WIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGV 177 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~~-~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~ 177 (367)
......|++++.|+++++ +.+|++.+|++|+ ++||+|+.+|. .|...|+++|.++|++ ||++||+|++
T Consensus 89 --n~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt----~~tKAIipVhl---~G~~~dm~~i~~la~~--~~l~vIEDaA 157 (374)
T COG0399 89 --NAVLLVGAKPVFVDIDPDTLNIDPDLIEAAIT----PRTKAIIPVHL---AGQPCDMDAIMALAKR--HGLPVIEDAA 157 (374)
T ss_pred --HHHHHcCCeEEEEecCCcccCCCHHHHHHHcc----cCCeEEEEehh---ccCCCCHHHHHHHHHH--cCCeEEEEcc
Confidence 445678999999999965 7899999999999 57899999985 7999999999999999 9999999999
Q ss_pred eccCceeecccc---c-cceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcH
Q 017726 178 SSICAIDFRMDE---W-GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSI 253 (367)
Q Consensus 178 ~~~~~~~~~~~~---~-~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (367)
|++|+.- .... . ++-+..+...|.+.+..|..++.-++++.++++..+..+...+........+.|. ...+
T Consensus 158 qa~Ga~y-~gk~vGt~Gd~~~fSF~~~K~ittgEGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~----N~rm 232 (374)
T COG0399 158 QAHGATY-KGKKVGSFGDIGAFSFHATKNLTTGEGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGY----NYRL 232 (374)
T ss_pred hhccCee-cCcccccccceEEEEecCCCCccccCceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeeccc----ccCH
Confidence 9998752 2111 1 2456666678999777664444456666776665433222110000000001121 1222
Q ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCC-CccCCCceEEEEcCCC-CCHHHHHHHHHhhC
Q 017726 254 QLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQK-EEWFSDTVTAVIVPSH-INSSEIVRRAWQRY 330 (367)
Q Consensus 254 ~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~l~~~L~~~~ 330 (367)
-.+++|+.+.+-+.++++.++.+++++.+.+.|++. ++.+.... ....++.+..+.+++. .+-+.+.+.|+++
T Consensus 233 ---~~iqAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~~~R~~l~~~L~~~- 308 (374)
T COG0399 233 ---TEIQAAIGLAQLERLDEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDEEGISRDALMESLKEA- 308 (374)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecCCCCCHHHHHHHHHhC-
Confidence 346777777766668889999999999999999987 54443332 2234566666776543 6678899999755
Q ss_pred CeE
Q 017726 331 NLS 333 (367)
Q Consensus 331 gv~ 333 (367)
||.
T Consensus 309 gi~ 311 (374)
T COG0399 309 GVG 311 (374)
T ss_pred CCC
Confidence 554
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-22 Score=180.46 Aligned_cols=274 Identities=14% Similarity=0.140 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC-
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG- 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~- 118 (367)
....+++++.+++++|.+ .+++++||++|+.+++.++ +.+||+|+++.+.|.+.. ..+...|++++.++++.+
T Consensus 30 ~~~~~~~e~~la~~~g~~---~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~--~~~~~~G~~~v~~d~d~~~ 104 (375)
T PRK11706 30 GGFTRRCQQWLEQRFGSA---KVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTA--NAFVLRGAKIVFVDIRPDT 104 (375)
T ss_pred CHHHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHH--HHHHHcCCEEEEEecCCCc
Confidence 356778899999999874 3889999999998877654 789999999999877653 456778999999998866
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccc--cceEEE
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW--GIDVAL 196 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~--~~d~~~ 196 (367)
+.+|+++++++++ +++|+|++++ ++|...|+++|.++|++ +|++||+|++|+++.. .+.... ..|+-+
T Consensus 105 ~~~d~~~le~~i~----~~tk~i~~~~---~~G~~~~~~~i~~la~~--~~i~vIeD~a~a~g~~-~~~~~~g~~~~~~~ 174 (375)
T PRK11706 105 MNIDETLIEAAIT----PKTRAIVPVH---YAGVACEMDTIMALAKK--HNLFVVEDAAQGVMST-YKGRALGTIGHIGC 174 (375)
T ss_pred CCcCHHHHHHhcC----CCCeEEEEeC---CCCCccCHHHHHHHHHH--cCCEEEEECccccccc-cCCeeeecCcCEEE
Confidence 4789999999997 4679998764 69999999999999999 9999999999998763 111111 246677
Q ss_pred ecCC--CcccCCCcceeeeeCHHHHHHhccCCCCceeec-hHH-HHHH---hhcCCccCCCCcHHHHHHHHHHHHHHHHh
Q 017726 197 TGSQ--KALSLPTGMGIVCASPKALEASKTAKSVRVFFD-WKD-YIKF---YNLGTFWPYTPSIQLLYGLRAALDLIFEE 269 (367)
Q Consensus 197 ~s~~--K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~---~~~~~~~~~~~~~~~~~al~~al~~~~~~ 269 (367)
+|+| |.+..+.|.+++..++++.+++......+...+ ... .... ...|. ...++ .+.+++...+-.
T Consensus 175 ~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~--~~~~~-----~~~aa~~~~ql~ 247 (375)
T PRK11706 175 FSFHETKNYTAGEGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGS--SYLPS-----ELQAAYLWAQLE 247 (375)
T ss_pred EeCCCCccccccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeeccc--ccCcC-----HHHHHHHHHHHH
Confidence 7766 999655554566667788776654432110000 000 0000 00111 11111 233344433333
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHcC----Ccccc-CCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccC
Q 017726 270 GLENVIERHRRLGKATRLAVEAWG----LKNCT-QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLG 337 (367)
Q Consensus 270 g~~~~~~~~~~~~~~l~~~L~~~g----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g 337 (367)
.+++..++.+++.+.+.+.|++.. +.+.. +......+.++++.++++.+.+++.+.|.++ ||.++..
T Consensus 248 ~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-gI~~~~~ 319 (375)
T PRK11706 248 AADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRDLEDRSALINFLKEA-GIMAVFH 319 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECCcCCHHHHHHHHHHC-CCCcccc
Confidence 367778888889999999988752 22211 2122234445667775556788999999765 9987644
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-22 Score=179.48 Aligned_cols=277 Identities=16% Similarity=0.098 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH-HHHH-HHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL-WIDQ-QQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~-~~~~-~~~~g~~~~~v~~~~~ 118 (367)
.+...++++.++++.|.+ .++.++||++|+.+++. ++.+||+|+++.+.|.+.. +... ....++++ .
T Consensus 53 ~p~~~~le~~lA~leg~~---~~v~~~sG~aAi~~~l~-~l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~-------~ 121 (364)
T PRK07269 53 NPTRAKLEETLAAIESAD---YALATSSGMSAIVLAFS-VFPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHF-------T 121 (364)
T ss_pred CccHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHH-HhCCCCEEEEecCCcCchHHHHHHHHhcCcEEE-------E
Confidence 355789999999999854 37888999999998884 5789999999988766543 2121 12112211 1
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
+..|+++++++++ ++||+|++++|+||+|.+.|+++|.++|++ +|+++++|++++.+... .....++|++++|
T Consensus 122 ~~~d~~~l~~~i~----~~TklV~lesP~NPtg~~~di~~I~~la~~--~gi~vvvD~t~~~~~~~-~pl~~gaDivv~S 194 (364)
T PRK07269 122 YANTEEELIAAIE----EDTDIVYIETPTNPLMVEFDIEKVAKLAHA--KGAKVIVDNTFYSPIYQ-RPIELGADIVLHS 194 (364)
T ss_pred ecCCHHHHHHhcC----cCceEEEEECCCCCCCeeeCHHHHHHHHHH--cCCEEEEECCCcccccC-CchhhCCcEEEec
Confidence 2247899999997 467999999999999999999999999999 99999999997654322 2234589999999
Q ss_pred CCCcccCCCc--ceeeee-CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHH
Q 017726 199 SQKALSLPTG--MGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~ 275 (367)
.+|+++|+.. .|+++. ++++.+++.... ...|. ..+.. .+++....-..++.++
T Consensus 195 ~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~--------------~~~G~----~~s~~-----~a~l~~~~L~tL~~r~ 251 (364)
T PRK07269 195 ATKYLSGHNDVLAGVVVTNDLELYEKLFYNL--------------NTTGA----VLSPF-----DSYLLMRGLKTLSLRM 251 (364)
T ss_pred CceeccCCCcccceEEEeCcHHHHHHHHHHH--------------HHhCC----CCCHH-----HHHHHHcCCCcHHHHH
Confidence 9999987554 377676 455665554210 01121 23332 2222222222377888
Q ss_pred HHHHHHHHHHHHHHHHc-CC-ccccCCCccCCCceEEEEcCCCC-CHHHHHHHHHh---------hCCeEEccCCCC---
Q 017726 276 ERHRRLGKATRLAVEAW-GL-KNCTQKEEWFSDTVTAVIVPSHI-NSSEIVRRAWQ---------RYNLSLGLGLNK--- 340 (367)
Q Consensus 276 ~~~~~~~~~l~~~L~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~L~~---------~~gv~v~~g~~~--- 340 (367)
++.++++..+.+.|++. ++ .+.-| ..+.+++|.+. +. ....|.+.|.- ...+.+.|....
T Consensus 252 ~~~~~na~~~a~~L~~~p~v~~v~yp----g~gg~~sf~~~-~~~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~~~~~~ 326 (364)
T PRK07269 252 ERSTANAQEVVAFLKKSPAVKEVLYT----GKGGMISFKVA-DETRIPHILNSLKVFTFAESLGGVESLITYPTTQTHAD 326 (364)
T ss_pred HHHHHHHHHHHHHHHhCCCccEEeCC----CcCcEEEEEEC-CHHHHHHHHHhCCcceEccCCCCcCeEeeCCccccccc
Confidence 89999999999999987 54 33323 13457888873 21 12234433321 011222221110
Q ss_pred ----------CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 341 ----------VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 341 ----------~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
..++.||+| .|-++.+|+..++-
T Consensus 327 ~~~~~r~~~Gi~~~liRls-vGlE~~~dli~dl~ 359 (364)
T PRK07269 327 IPAEVRHSYGLTDDLLRLS-IGIEDARDLIADLK 359 (364)
T ss_pred CCHHHHHhcCCCCCeEEEE-eccCCHHHHHHHHH
Confidence 113469998 57778888876654
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-22 Score=182.03 Aligned_cols=289 Identities=16% Similarity=0.127 Sum_probs=193.5
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCCCCC--C-----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNEDYRS--P-----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT 80 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~--~-----~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~ 80 (367)
+..+.+..|-.++++++++++.+....+.. + .......++++.+++++|.+. .++++|++.|+.+++.+
T Consensus 81 g~v~~tNlg~s~l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~gae~---alvv~sg~aAi~l~l~~- 156 (454)
T TIGR00474 81 GVVLHTNLGRAPLAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGAED---ALVVNNNAAAVLLALNT- 156 (454)
T ss_pred CcEEeccCCCCCCCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCCCc---EEEECCHHHHHHHHHHH-
Confidence 356677788888999999999875443211 1 123557899999999999876 34568889999888854
Q ss_pred CCCCCeEEEEeCCcc----hHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCc--c--c
Q 017726 81 LSPGDRIISFLIGQF----SLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETAT--G--V 152 (367)
Q Consensus 81 ~~~gd~vl~~~~~~~----~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~t--G--~ 152 (367)
+.+||+|++++..|. +..+...++..|++++.++.+. ..++++++++++ ++|++|++++++|++ | .
T Consensus 157 l~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~--~~~l~dle~aI~----~~T~lv~~~h~sN~~~~G~~~ 230 (454)
T TIGR00474 157 LAKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTN--RTHLKDYEDAIT----ENTALLLKVHTSNYRIVGFTE 230 (454)
T ss_pred hCCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCC--CCCHHHHHHhcC----cCCEEEEEEccCcccccCCCC
Confidence 689999999987642 1233455677899999997643 357899999998 467999999999985 6 5
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeecc---------Ccee--eccccccceEEEecCCCcccCCCcceeeeeCHHHHHH
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSI---------CAID--FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEA 221 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~---------~~~~--~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~ 221 (367)
+.|+++|.++||+ +|+++++|.+.+. ...+ .+....|+|++++|++|+++||. .|+++++++++++
T Consensus 231 ~~dl~~I~~la~~--~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~-~G~i~g~~~~i~~ 307 (454)
T TIGR00474 231 EVSIAELVALGRE--HGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQ-AGIIVGKKELIER 307 (454)
T ss_pred CCCHHHHHHHHHH--cCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCe-EEEEEECHHHHHh
Confidence 7899999999999 9999999976332 1222 13445689999999999998775 6999999999887
Q ss_pred hccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh--------C---hHHHHHHHHHHHHHHHHHHH
Q 017726 222 SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE--------G---LENVIERHRRLGKATRLAVE 290 (367)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~--------g---~~~~~~~~~~~~~~l~~~L~ 290 (367)
+...... ..+..+. ..++++.+++...... + +....++.++++..+.+.|+
T Consensus 308 l~~~~l~----------r~lr~~k--------~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~ 369 (454)
T TIGR00474 308 LKKNPLT----------RALRVDK--------LTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLK 369 (454)
T ss_pred hhhchhH----------HHHhhCh--------HHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHH
Confidence 6532110 1111111 1223344444333211 1 22334566677888888887
Q ss_pred Hc---C--CccccCC--------CccC-CCceEEEEcCCCCCHHHHHHHHHh
Q 017726 291 AW---G--LKNCTQK--------EEWF-SDTVTAVIVPSHINSSEIVRRAWQ 328 (367)
Q Consensus 291 ~~---g--~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 328 (367)
+. + ..+.... +... ....+.+. +.+.+..++.++|++
T Consensus 370 ~~~~~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~-~~~~~~~~l~~~lr~ 420 (454)
T TIGR00474 370 AALGPGFELEIVPGLSQVGGGSLPDERLPSYAVTLT-PDGLSAEKLEARLRE 420 (454)
T ss_pred hhccCCceEEEEEcCCcccCCCCcCCCCCeEEEEEe-cCCCCHHHHHHHHhc
Confidence 63 2 2333321 1111 12223333 346788999999964
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=180.48 Aligned_cols=163 Identities=18% Similarity=0.169 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.+...++++.++++.|.+. .++++||+.|+.+++.+++.+||+|++++..|.+.. +...++..|+++..++ +.
T Consensus 68 ~pt~~~le~~la~l~g~~~---~v~fsSG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-~~- 142 (437)
T PRK05613 68 NPTVEALENRIASLEGGVH---AVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVE-NP- 142 (437)
T ss_pred ChHHHHHHHHHHHHhCCCe---EEEeCCHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEEC-CC-
Confidence 4668899999999999853 345566779998888888899999999988888763 4456677899999997 22
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
.|+++++++++ +++++|++.++.||+|.+.|+++|.++|++ +|+++++|++++.+.. ......|+|++++|
T Consensus 143 --~d~e~l~~~l~----~~tk~V~~e~~~Np~~~v~di~~I~~la~~--~gi~livD~t~a~g~~-~~p~~~GaDivv~S 213 (437)
T PRK05613 143 --DDPESWQAAVQ----PNTKAFFGETFANPQADVLDIPAVAEVAHR--NQVPLIVDNTIATAAL-VRPLELGADVVVAS 213 (437)
T ss_pred --CCHHHHHHhCC----ccCeEEEEECCCCCCCcccCHHHHHHHHHH--cCCeEEEECCCccccc-cChHHhCCCEEEee
Confidence 27899999998 467999999999999999999999999999 9999999999977654 34445689999999
Q ss_pred CCCcccCCC-cc-eeeeeCHH
Q 017726 199 SQKALSLPT-GM-GIVCASPK 217 (367)
Q Consensus 199 ~~K~~~g~~-g~-g~~~~~~~ 217 (367)
+||+++|.. ++ |+++.+++
T Consensus 214 ~~K~l~G~gd~~gG~vv~~~~ 234 (437)
T PRK05613 214 LTKFYTGNGSGLGGVLIDGGK 234 (437)
T ss_pred ccceecCCCcceeEEEEecCc
Confidence 999997542 33 44544433
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-21 Score=178.86 Aligned_cols=275 Identities=19% Similarity=0.187 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCC-CeEEEEeCCcchHHHHHHHHHhCC------------
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPG-DRIISFLIGQFSLLWIDQQQRLNF------------ 108 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~g-d~vl~~~~~~~~~~~~~~~~~~g~------------ 108 (367)
....++.+.++++++.+..+.+++++||++|+..++.....+| +.|+...++|++..... ....|.
T Consensus 85 ~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~-~~~~~~~~~~~~~~~~~~ 163 (398)
T PRK03244 85 EPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGA-LALTGQPAKRAPFEPLPG 163 (398)
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHH-HhccCCcccccCCCCCCC
Confidence 3346899999999886533569999999999999988654455 46777767777753211 111221
Q ss_pred ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce-
Q 017726 109 NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI- 183 (367)
Q Consensus 109 ~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~- 183 (367)
++..+|. .|++++++++. +++++|++++++||+|.+.| +++|.++|++ +|+++|+|++++....
T Consensus 164 ~~~~~~~-----~d~~~l~~~~~----~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~--~~~llI~DEv~~g~gr~ 232 (398)
T PRK03244 164 GVEHVPY-----GDVDALAAAVD----DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDR--HGALLVLDEVQTGIGRT 232 (398)
T ss_pred CceEeCC-----CCHHHHHHhhc----CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHH--cCCEEEEeccccCCccc
Confidence 2223332 27899998885 46799999999999999987 8899999999 9999999999863221
Q ss_pred ----eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHH
Q 017726 184 ----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGL 259 (367)
Q Consensus 184 ----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 259 (367)
.+.......|++++ +|+++++.++|++++++++++.+..... +. .+..+...+.+.
T Consensus 233 g~~~~~~~~~~~pDi~t~--sK~l~~G~~ig~~~~~~~~~~~~~~~~~----------------~~--t~~~~~~~~aaa 292 (398)
T PRK03244 233 GAWFAHQHDGVTPDVVTL--AKGLGGGLPIGACLAFGPAADLLTPGLH----------------GS--TFGGNPVACAAA 292 (398)
T ss_pred chHHhhhhhCCCCCEEEE--chhhhCCcccEEEEEcHHHHhhccCCCC----------------cC--CCCCCHHHHHHH
Confidence 11222334677644 7999765568999999998776653211 11 234556566666
Q ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCC
Q 017726 260 RAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLN 339 (367)
Q Consensus 260 ~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~ 339 (367)
.++++.+.+. +..++..++.+++.+.|++++++....-. ..+.++++.++. ....++.+.|.++ ||.+.+.
T Consensus 293 ~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~v~--g~g~~~~i~~~~-~~~~~~~~~l~~~-Gv~~~~~-- 363 (398)
T PRK03244 293 LAVLDTIASE---GLLENAERLGEQLRAGIEALGHPLVDHVR--GRGLLLGIVLTA-PVAKAVEAAAREA-GFLVNAV-- 363 (398)
T ss_pred HHHHHHHHhc---cHHHHHHHHHHHHHHHHHhcCCCceeeEe--eccEEEEEEEec-cHHHHHHHHHHHC-CeEEeec--
Confidence 6677766554 34567788889999999987644332111 144567777742 2456788888755 9999763
Q ss_pred CCCCcEEEEeecCCCCHHHH
Q 017726 340 KVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 340 ~~~~~~iRi~~~~~~~~~~~ 359 (367)
..+.+|+++....+++|+
T Consensus 364 --~~~~iR~~p~~~~t~~~i 381 (398)
T PRK03244 364 --APDVIRLAPPLIITDAQV 381 (398)
T ss_pred --CCCEEEEECCCcCCHHHH
Confidence 236799997776655443
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-21 Score=177.42 Aligned_cols=158 Identities=18% Similarity=0.174 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 119 (367)
....++++.++++.|.+. .++++||+.|+..++.+++.+||+|+++.+.|.+.. +...+...|++++.++..
T Consensus 63 p~~~~le~~lA~l~g~~~---al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~--- 136 (427)
T PRK05994 63 PTNAVLEERVAALEGGTA---ALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADAD--- 136 (427)
T ss_pred ccHHHHHHHHHHHhCCCc---EEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCC---
Confidence 456789999999999765 467799999999999989999999999999887753 445567789999988754
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecC
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS 199 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~ 199 (367)
|+++++++++ +++++|++++|+||+|.+.|+++|.++|++ +|+++++|++++.+... .....++|+++.|.
T Consensus 137 --d~~~l~~ai~----~~tklV~vesp~NptG~v~dl~~I~~la~~--~gi~livD~a~a~~~~~-~pl~~gaDivv~S~ 207 (427)
T PRK05994 137 --DPASFERAIT----PRTKAIFIESIANPGGTVTDIAAIAEVAHR--AGLPLIVDNTLASPYLI-RPIEHGADIVVHSL 207 (427)
T ss_pred --CHHHHHHhcC----cCCeEEEEECCCCCCCeecCHHHHHHHHHH--cCCEEEEECCccccccC-CccccCCcEEEEcC
Confidence 7899999987 467999999999999999999999999999 99999999999865432 33356899999999
Q ss_pred CCcccCCCc-ceeeee
Q 017726 200 QKALSLPTG-MGIVCA 214 (367)
Q Consensus 200 ~K~~~g~~g-~g~~~~ 214 (367)
+|+++|+.+ +|.+++
T Consensus 208 tK~lgg~~~~~gG~v~ 223 (427)
T PRK05994 208 TKFLGGHGNSMGGIIV 223 (427)
T ss_pred ccccCCCCCcEEEEEE
Confidence 999986654 344443
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=180.33 Aligned_cols=159 Identities=18% Similarity=0.116 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 119 (367)
....++++.++++.|.+. .++++||+.|+..++.+++.+||+|++....|.+.. +...+...|++++.++ +.
T Consensus 69 p~~~~Le~~lA~l~g~~~---av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-d~-- 142 (436)
T PRK07812 69 PTQDVVEQRIAALEGGVA---ALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE-DP-- 142 (436)
T ss_pred chHHHHHHHHHHHhCCCe---EEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC-CC--
Confidence 556799999999999765 467788999999999999999999999988776643 3344566788888885 22
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecC
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS 199 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~ 199 (367)
.|+++++++++ +++++|++.+++||+|.+.|+++|.++||+ +|+++++|++++.+....+ ...++|+++.|+
T Consensus 143 -~d~e~l~~ai~----~~tklV~ie~~sNp~G~v~Dl~~I~~la~~--~gi~liVD~t~a~~~~~~p-l~~GaDivv~S~ 214 (436)
T PRK07812 143 -DDLDAWRAAVR----PNTKAFFAETISNPQIDVLDIPGVAEVAHE--AGVPLIVDNTIATPYLIRP-LEHGADIVVHSA 214 (436)
T ss_pred -CCHHHHHHhCC----CCCeEEEEECCCCCCCeecCHHHHHHHHHH--cCCEEEEECCCcccccCCc-hhcCCCEEEEec
Confidence 28999999887 467999999999999999999999999999 9999999999876544323 346899999999
Q ss_pred CCcccCCCc-ceeeee
Q 017726 200 QKALSLPTG-MGIVCA 214 (367)
Q Consensus 200 ~K~~~g~~g-~g~~~~ 214 (367)
+|+++|..+ +|.+++
T Consensus 215 tK~lgg~G~~i~G~vv 230 (436)
T PRK07812 215 TKYLGGHGTAIAGVIV 230 (436)
T ss_pred ccccCCCCCeEEEEEE
Confidence 999975533 444444
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-22 Score=180.72 Aligned_cols=294 Identities=17% Similarity=0.147 Sum_probs=196.6
Q ss_pred CcccccCCCCCChHHHHHHHccCCCC-----CCCCcHHHHHHHHHHHHHHHhcCCCC------ceEEecCChhHHHHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNED-----YRSPAVPALTKTLLEDIKKIFKTTSG------TPFLIPTTGTGAWESAL 77 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~la~~~~~~~~------~~v~~~~ggt~al~~~~ 77 (367)
+.+.+.+++...+.-+.+.+....+. ..+|.......++.+++++++|.+.+ -.-++|+|||+++..++
T Consensus 41 ~~~~~~~~~~~~~~i~~~~l~~~~n~n~~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al 120 (373)
T PF00282_consen 41 RFFGFVPGGPSPASILADLLASALNQNGFTWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYAL 120 (373)
T ss_dssp TBESSSHT--CHHHHHHHHHHHHHT-BTTSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHH
T ss_pred hHhhhccCCccHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHH
Confidence 55666676655444444444443222 22455677888999999999999821 24689999999998877
Q ss_pred HccC--------C-----CCC-eEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCC--CCccEE
Q 017726 78 TNTL--------S-----PGD-RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA--HTIKAI 141 (367)
Q Consensus 78 ~~~~--------~-----~gd-~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~--~~~~lv 141 (367)
.+.. . .++ .|+++...|++ +.+.+..+|+.++.||+++++++|+++|++++++... ..+-+|
T Consensus 121 ~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S--~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~v 198 (373)
T PF00282_consen 121 LAARERALPRSKAKGVEEIPKPVIYVSEQAHYS--IEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAV 198 (373)
T ss_dssp HHHHHHHHHHHHHHTTTHCSSEEEEEETTS-TH--HHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHhhhhhhcccccccccccccccccccH--HHHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceee
Confidence 4321 0 122 35555556776 4588999999999999999999999999999876321 124477
Q ss_pred EEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceee------ccccccceEEEecCCCcccCCCcceeeeeC
Q 017726 142 CIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF------RMDEWGIDVALTGSQKALSLPTGMGIVCAS 215 (367)
Q Consensus 142 ~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~------~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~ 215 (367)
+.+...+.+|.+.|+++|.++|++ +++|+++|++++...+.. ...-..+|.++.++|||+..|.++|+++.+
T Consensus 199 vat~Gtt~~Ga~D~l~~i~~i~~~--~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r 276 (373)
T PF00282_consen 199 VATAGTTNTGAIDPLEEIADICEK--YNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVR 276 (373)
T ss_dssp EEEBS-TTTSBB-SHHHHHHHHHH--CT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEES
T ss_pred eccCCCcccccccCHHHHhhhccc--cceeeeecccccccccccccccccccccccccccccchhhhhcCCccceeEEee
Confidence 888999999999999999999999 999999999988643321 112236899999999999999999999988
Q ss_pred HHH-HHHhccCCCCceeechH--HHHHHhhcCCc-cCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Q 017726 216 PKA-LEASKTAKSVRVFFDWK--DYIKFYNLGTF-WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA 291 (367)
Q Consensus 216 ~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 291 (367)
.+. +...... ...|+... ........+.+ ..++. -...+.++.+++.+..+|+.+++++..++++++.+.|++
T Consensus 277 ~~~~l~~~~~~--~~~Yl~~~~~~~~~~~~~~~~tl~~SR-~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~ 353 (373)
T PF00282_consen 277 DKSDLRDAFSI--NADYLGNDDRESDESYDYGDYTLQGSR-RFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRK 353 (373)
T ss_dssp SGGGHHGGGEE--EETCTT-S-SSS-GGGCEEEGSSSSSG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccchHHHhcc--Chhhhcccccccccccccccccccccc-cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 764 3322211 11111100 00000111111 11122 445578888899999999999999999999999999999
Q ss_pred c-CCccccCCCccCCCceEEEEc
Q 017726 292 W-GLKNCTQKEEWFSDTVTAVIV 313 (367)
Q Consensus 292 ~-g~~~~~~~~~~~~~~~~~~~~ 313 (367)
. +++++.+ ....+++|+.
T Consensus 354 ~~~~el~~~----~~~~~vcFr~ 372 (373)
T PF00282_consen 354 DPRFELVNE----PDLNIVCFRY 372 (373)
T ss_dssp STTEEESST----TSSSEEEEEE
T ss_pred CCCEEEEcC----CCceEEEEEe
Confidence 8 6888775 4556788876
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-21 Score=190.42 Aligned_cols=305 Identities=13% Similarity=0.105 Sum_probs=218.5
Q ss_pred CChHHHHHHHccCCCC---CC--CC----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCC--CCe
Q 017726 19 HIPDQVIRAMNRNNED---YR--SP----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSP--GDR 86 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~---~~--~~----~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~--gd~ 86 (367)
.+|..+++++.+...- +. .+ +..+...++++.+++++|++.++ +.++.++|.+.+.++.+. +.+ +++
T Consensus 116 ~~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~~an-aSL~d~aTAaaea~~~a~~~~~g~~~~ 194 (993)
T PLN02414 116 HVPPVILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQTMITDLTGLPMSN-ASLLDEGTAAAEAMAMCNNILKGKKKK 194 (993)
T ss_pred cCCHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhCCChhh-EeecCChHHHHHHHHHHHhcccCCCCE
Confidence 4788887888875431 11 11 23455778999999999998765 888899999998777654 444 478
Q ss_pred EEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHH
Q 017726 87 IISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLD 164 (367)
Q Consensus 87 vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~ 164 (367)
|++++..|+++. +...++..|++++.++.+.. + ... ..+ ..++++..|.+|.+.|+++|.++||
T Consensus 195 VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~---~------~~~----~~v-~~vlvq~P~~~G~v~dv~~I~~~ah 260 (993)
T PLN02414 195 FLIASNCHPQTIDVCQTRADGLGLEVVVADEKDF---D------YSS----GDV-CGVLVQYPATDGEVLDYAEFVKNAH 260 (993)
T ss_pred EEEcCccCHhHHHHHHHhhhhcCCEEEEecchhh---c------ccc----Cce-EEEEEecCCCCeEEcCHHHHHHHHH
Confidence 999999999875 56677889999999987531 1 111 111 2344666678999999999999999
Q ss_pred hcCCCcEEEEeeeeccCceee-ccccccceEEEecCCCcccCCCc-----ceeeeeCHHHHHHhccCCCCceee------
Q 017726 165 EYRHPALFLVDGVSSICAIDF-RMDEWGIDVALTGSQKALSLPTG-----MGIVCASPKALEASKTAKSVRVFF------ 232 (367)
Q Consensus 165 ~~~~~~~vi~D~~~~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g-----~g~~~~~~~~~~~~~~~~~~~~~~------ 232 (367)
+ +|+++++ +++..+...+ ++.++|+||+++++|||. +|.| .|++++++++.+.+.....+ +..
T Consensus 261 ~--~GaL~iV-aad~lal~~l~~pge~GADi~vgsgqKwg-~P~G~GGP~aGflavr~~~~r~~PgriVG-~s~d~~g~~ 335 (993)
T PLN02414 261 A--NGVKVVM-ATDLLALTMLKPPGEWGADIVVGSAQRFG-VPMGYGGPHAAFLATSQEYKRLMPGRIIG-VSVDSSGKP 335 (993)
T ss_pred H--cCCEEEE-EECHHHhcCCCCHhhccCcEEEECCCccc-cCCCCCCCCeeEEEECHHHHhhCCCcccC-cccCCCCCc
Confidence 9 9999999 8777766666 477889999999999997 3433 79999999987755432221 111
Q ss_pred ------chHHHHHHhhcCCccCCCCcHHHHHHHHHHHHH-----HHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCC
Q 017726 233 ------DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL-----IFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKE 301 (367)
Q Consensus 233 ------~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~-----~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 301 (367)
....+..|++.++ +|+....++.+++.. +...|++++.+++.+++.++.+.|++.|+++..+
T Consensus 336 ~~~l~LqtReqhiRrEkaT-----sNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~G~~~~~~-- 408 (993)
T PLN02414 336 ALRMAMQTREQHIRRDKAT-----SNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKLGFQVQSL-- 408 (993)
T ss_pred ccccccccccchhhhcccc-----cchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhcCCccCCC--
Confidence 1223334566554 777555666666543 3457899999999999999999998889887654
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 302 EWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
. ... .+.|+++ +..++.++|.++ ||.++... ++.+|+|++.+++.+|++
T Consensus 409 ~-~f~-~vt~~~~---~~~~v~~~L~~~-gI~l~~~~----~~~lrvs~~e~~T~edId 457 (993)
T PLN02414 409 P-FFD-TVKVKCS---DADAIADAAAKV-GINLRVVD----ANTVTVSFDETTTLEDVD 457 (993)
T ss_pred C-CcC-eEEEecC---CHHHHHHHHHHC-CCeeEEec----CCeEEEEeeccCCHHHHH
Confidence 2 222 5667764 457899999755 98776432 356999998887766544
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-21 Score=168.01 Aligned_cols=288 Identities=17% Similarity=0.104 Sum_probs=211.5
Q ss_pred CcHHHHHHHHHHHHHHHhc----CC--CCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceE
Q 017726 38 PAVPALTKTLLEDIKKIFK----TT--SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVD 111 (367)
Q Consensus 38 ~~~~~~~~~~~~~la~~~~----~~--~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~ 111 (367)
|+...+..++...+.++.+ .+ .+.++++|+|.|.++..+++.+++.||.|++....+.+. ....+..|++++
T Consensus 96 Yg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~A--L~s~~a~gv~~i 173 (472)
T KOG0634|consen 96 YGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSA--LQSMEALGVKII 173 (472)
T ss_pred cccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhhcCCCceEEecccchHH--HHhccccCceEE
Confidence 3444556677777777555 22 334599999999999999999999999999987766553 355678899999
Q ss_pred EEeCCCCCCCCHHHHHHHHhccCC-----CCccEE-EEEecCCCccccccH---HHHHHHHHhcCCCcEEEEeeeeccCc
Q 017726 112 VVESDWGEGAKLDVLASKLAADTA-----HTIKAI-CIVHNETATGVTNNL---SKVRKLLDEYRHPALFLVDGVSSICA 182 (367)
Q Consensus 112 ~v~~~~~~~~d~e~l~~~i~~~~~-----~~~~lv-~~~~~~n~tG~~~~~---~~i~~~~~~~~~~~~vi~D~~~~~~~ 182 (367)
.|+++.++ +++|.+++.++.... ++++++ .+.+.+||||..++. ++|.++|++ |+.+||+|+.|.+..
T Consensus 174 pv~md~~G-i~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArK--yDfLIVeDdpYy~Lq 250 (472)
T KOG0634|consen 174 PVKMDQDG-IDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARK--YDFLIVEDDPYYFLQ 250 (472)
T ss_pred eccccCCC-CCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHH--cCEEEEecCccceee
Confidence 99987655 799999999887431 456766 667889999999874 579999999 999999999876544
Q ss_pred ee--------------------------eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHH
Q 017726 183 ID--------------------------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 183 ~~--------------------------~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (367)
+. .+.+-.|..+-..|+||.++.+.++|++.+++..++++....
T Consensus 251 ~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~~~l~ril~~a---------- 320 (472)
T KOG0634|consen 251 MNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNSLFLKRILDLA---------- 320 (472)
T ss_pred ccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCHHHHHHHhhhc----------
Confidence 33 112223667888899999976667899999998888776431
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC----hHHHHHHHHHHHHHHHHHHHHc---C-CccccCCCccCCCce
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG----LENVIERHRRLGKATRLAVEAW---G-LKNCTQKEEWFSDTV 308 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g----~~~~~~~~~~~~~~l~~~L~~~---g-~~~~~~~~~~~~~~~ 308 (367)
+..+ . .|+-.....+.+.++.+.++| +.+++..+...+..+..+|.+. + +++.+| .++.+
T Consensus 321 -----e~~t--~-~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P----~aGmF 388 (472)
T KOG0634|consen 321 -----EVAT--S-GPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPP----KAGMF 388 (472)
T ss_pred -----ceee--c-CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecC----CcceE
Confidence 1111 1 133333355667777777766 6667778888889999999884 4 566677 78889
Q ss_pred EEEEcC-------CCCC-HHHHHHHHHhhCCeEEccCCCCC------CCc-EEEEeecC
Q 017726 309 TAVIVP-------SHIN-SSEIVRRAWQRYNLSLGLGLNKV------AGK-VFRIGHLG 352 (367)
Q Consensus 309 ~~~~~~-------~~~~-~~~l~~~L~~~~gv~v~~g~~~~------~~~-~iRi~~~~ 352 (367)
+|++++ ++++ .+++......++||.+..|..+. .++ ++|+++..
T Consensus 389 iwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~ 447 (472)
T KOG0634|consen 389 IWVEIPYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAF 447 (472)
T ss_pred EEEEecccccccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeec
Confidence 999996 5565 66777767778899999885421 134 79998643
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-21 Score=178.02 Aligned_cols=161 Identities=17% Similarity=0.176 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.....++++.+++++|.+. .++++||+.|+..++.+++.+||+|+++++.|.+.. +...++..|++++.++.+
T Consensus 56 ~p~~~~le~~lA~l~g~~~---~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~-- 130 (418)
T TIGR01326 56 NPTTDVLEQRIAALEGGVA---ALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPD-- 130 (418)
T ss_pred ChhHHHHHHHHHHHhCCCe---EEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECCC--
Confidence 3556899999999999643 688899999999999888999999999998776643 445677889999998753
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ +++++|++++|+||+|.+.|+++|.++|++ +|+++++|++++.+... .....++|+++.|
T Consensus 131 ---d~~~l~~~l~----~~t~~V~le~p~NPtg~v~dl~~I~~la~~--~~i~livD~t~~~~~~~-~~l~~g~Divv~S 200 (418)
T TIGR01326 131 ---DPEEFEKAID----ENTKAVFAETIGNPAINVPDIEAIAEVAHA--HGVPLIVDNTFATPYLC-RPIDHGADIVVHS 200 (418)
T ss_pred ---CHHHHHHhcC----cCCeEEEEECCCCCCCeecCHHHHHHHHHH--cCCEEEEECCCchhhcC-CchhcCCeEEEEC
Confidence 7999999987 467999999999999999999999999999 99999999999765322 2224579999999
Q ss_pred CCCcccCCC-cceeeeeCH
Q 017726 199 SQKALSLPT-GMGIVCASP 216 (367)
Q Consensus 199 ~~K~~~g~~-g~g~~~~~~ 216 (367)
++|+++|+. .+|++++++
T Consensus 201 ~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 201 ATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred ccccccCCccceEEEEEec
Confidence 999997532 257777654
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=167.91 Aligned_cols=297 Identities=14% Similarity=0.107 Sum_probs=203.3
Q ss_pred HHHHHHHHHHHHhc----CC---CCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC
Q 017726 43 LTKTLLEDIKKIFK----TT---SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES 115 (367)
Q Consensus 43 ~~~~~~~~la~~~~----~~---~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 115 (367)
+..++|+++|+++. .. +++.+++++|+|.|++.++..+.+|||..+++.|-|++.- ..+.-+.|++++.|.+
T Consensus 122 Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfd-rdl~~rTgveivpv~c 200 (471)
T KOG0256|consen 122 GLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFD-RDLRWRTGVEIVPVHC 200 (471)
T ss_pred CchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCccc-ccceeccCceEEEEEe
Confidence 35567777777653 22 4567999999999999999999999999999999666542 2344457899988887
Q ss_pred CC--CCCCCHHHHHHHHhcc--CCCCccEEEEEecCCCccccccHHH---HHHHHHhcCCCcEEEEeeeeccCcee----
Q 017726 116 DW--GEGAKLDVLASKLAAD--TAHTIKAICIVHNETATGVTNNLSK---VRKLLDEYRHPALFLVDGVSSICAID---- 184 (367)
Q Consensus 116 ~~--~~~~d~e~l~~~i~~~--~~~~~~lv~~~~~~n~tG~~~~~~~---i~~~~~~~~~~~~vi~D~~~~~~~~~---- 184 (367)
.. +.+++.+.+|+++.+. ...++|.|++++|+||.|++++.++ +.+++++ +|+-||+|+.|+.....
T Consensus 201 ~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~--kniHvI~DEIya~sVF~~~~F 278 (471)
T KOG0256|consen 201 SSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASR--KNIHVISDEIYAGSVFDKSEF 278 (471)
T ss_pred ecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhh--cceEEEeehhhcccccCccCc
Confidence 64 4578999998887762 1268999999999999999998655 5666667 99999999998754321
Q ss_pred ec-------cc-cccceEEEecCCCcccCCCcc--eeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHH
Q 017726 185 FR-------MD-EWGIDVALTGSQKALSLPTGM--GIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQ 254 (367)
Q Consensus 185 ~~-------~~-~~~~d~~~~s~~K~~~g~~g~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (367)
.+ .. ..+..-++.|.+|-| |.+|. |+++...+.+-........ + + .-++...
T Consensus 279 ~Sv~ev~~~~~~~~~rvHivyslSKD~-GlpGfRvGviYS~ne~VvsaA~kmss-f-------------~---~vSs~tQ 340 (471)
T KOG0256|consen 279 RSVLEVRKDPHLDPDRVHIVYSLSKDF-GLPGFRVGVIYSNNEDVVSAATKMSS-F-------------G---LVSSQTQ 340 (471)
T ss_pred eEHHHHhhccccCCCcEEEEEEecccc-CCCceEEEEEEecChHHHHHHHHHhh-c-------------c---CCcHHHH
Confidence 01 11 123446788999999 57774 8898766654443322110 0 0 0011111
Q ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCC---C---HHHHHHHHHh
Q 017726 255 LLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI---N---SSEIVRRAWQ 328 (367)
Q Consensus 255 ~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~l~~~L~~ 328 (367)
-+++....=+++.+.-+.+..+|+...-+++.+.|+++|+++... .++.++|+++..-. + .-+|.+++.+
T Consensus 341 ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~lgI~cl~s----~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~ 416 (471)
T KOG0256|consen 341 YLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKALGIPCLKS----NAGLFCWVDLRKLLTSLTFEGELELWERILD 416 (471)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCceeec----CCeeEEEEEhHHhcCcCChHHHHHHHHHHHH
Confidence 111111111233333377788888999999999999999999987 67778888873211 1 2357888888
Q ss_pred hCCeEEccCCC--CCCCcEEEEeecCCCCH-HHHHHhhh
Q 017726 329 RYNLSLGLGLN--KVAGKVFRIGHLGHLNE-VMFNFQLL 364 (367)
Q Consensus 329 ~~gv~v~~g~~--~~~~~~iRi~~~~~~~~-~~~~~~~l 364 (367)
+-++.+.||.. +..++++|+++.+..++ .++..+.|
T Consensus 417 ~vklnlSpG~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri 455 (471)
T KOG0256|consen 417 NVKLNLSPGSSCHCHEPGWFRVCFANMSEETLEVAMRRL 455 (471)
T ss_pred hhccccCCCCcceecCCCeEEEEeccCCHHHHHHHHHHH
Confidence 77999999965 45678999998775443 44344433
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=180.10 Aligned_cols=161 Identities=16% Similarity=0.166 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.....++++.++++.|.+. .++++||++|+..++.+++.+||+|++..+.|.+.. +.......|+++..++.
T Consensus 57 ~pt~~~Le~~lA~l~g~~~---~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~--- 130 (425)
T PRK06084 57 NPTNDVLEQRVAALEGGVG---ALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAH--- 130 (425)
T ss_pred CchHHHHHHHHHHHhCCCc---eeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECC---
Confidence 3556799999999999643 467789999999999999999999999988777543 22222335666666653
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
.|+++++++++ +++++|++++|+||+|.+.|+++|.++|++ +|+++++|++++.+... .....++|++++|
T Consensus 131 --~d~e~le~ai~----~~tklV~lesp~NPtG~v~dl~~I~~la~~--~~i~vVvD~a~a~~~~~-~p~~~gaDivv~S 201 (425)
T PRK06084 131 --DDIAALEALID----ERTKAVFCESIGNPAGNIIDIQALADAAHR--HGVPLIVDNTVATPVLC-RPFEHGADIVVHS 201 (425)
T ss_pred --CCHHHHHHHhc----cCCcEEEEeCCCCCCCeecCHHHHHHHHHH--cCCEEEEECCCcccccC-ChhhcCCCEEEEC
Confidence 38999999997 467999999999999999999999999999 99999999999865443 2234589999999
Q ss_pred CCCcccCCCc-c-eeeeeCH
Q 017726 199 SQKALSLPTG-M-GIVCASP 216 (367)
Q Consensus 199 ~~K~~~g~~g-~-g~~~~~~ 216 (367)
++|+++|+.. + |+++.++
T Consensus 202 ~tK~l~G~g~~~gG~v~~~~ 221 (425)
T PRK06084 202 LTKYIGGHGTSIGGIVVDSG 221 (425)
T ss_pred chhcccccccceeEEEEeCC
Confidence 9999986533 3 4444433
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-21 Score=189.51 Aligned_cols=286 Identities=15% Similarity=0.063 Sum_probs=207.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCC--CCeEEEEeCCcchHH--HHHHHHHhCCceEEEe
Q 017726 40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSP--GDRIISFLIGQFSLL--WIDQQQRLNFNVDVVE 114 (367)
Q Consensus 40 ~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~--gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~ 114 (367)
..+...++++.++++.|++..+ +.+..++|.+.+.++.++ +.+ +++|++++..|++.. +...++..|++++.++
T Consensus 119 ~Leal~~~Qt~la~LtG~~~an-aSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~ 197 (954)
T PRK05367 119 RLEALLNFQTMVADLTGLEIAN-ASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGD 197 (954)
T ss_pred HHHHHHHHHHHHHHHHCCChhh-ccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEec
Confidence 3455778999999999998765 788899998888777664 344 489999999998875 5566788999999998
Q ss_pred CCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceE
Q 017726 115 SDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDV 194 (367)
Q Consensus 115 ~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~ 194 (367)
.+.+ .+ . .++.. ++.+..|.+|.+.|+++|.++||+ +|+++++|+.+..+....++.++|+||
T Consensus 198 ~~~d----~~------~----~~~~~-vlvq~p~~~G~i~d~~~i~~~ah~--~Gal~~vda~~~Al~~l~~pge~GaDi 260 (954)
T PRK05367 198 AAKA----LD------H----DDVFG-VLLQYPGTSGEVRDYTALIAAAHA--RGALVAVAADLLALTLLTPPGEMGADI 260 (954)
T ss_pred CccC----CC------c----ccEEE-EEEecCCCCeeeccHHHHHHHHHH--cCCEEEEEehhhhccCCCChhhcCCCE
Confidence 7542 11 1 23333 455557899999999999999999 999999999775544445778889999
Q ss_pred EEecCCCc-----ccCCCcceeeeeCHHHHHHhccCCCCceeec------------hHHHHHHhhcCCccCCCCcHHHH-
Q 017726 195 ALTGSQKA-----LSLPTGMGIVCASPKALEASKTAKSVRVFFD------------WKDYIKFYNLGTFWPYTPSIQLL- 256 (367)
Q Consensus 195 ~~~s~~K~-----~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~- 256 (367)
+++++||| ++| ++.|++++++++.+++.+...+ +..+ ..++..+++.++ +|+...
T Consensus 261 ~vgs~qkfg~P~g~GG-P~aGflavr~~~~r~lpgrivG-~s~d~~g~~~~~lalqtReqhiRrekaT-----sNict~q 333 (954)
T PRK05367 261 AVGSAQRFGVPMGFGG-PHAAYFAVRDAYKRSMPGRIVG-VSVDAAGNPALRLALQTREQHIRREKAT-----SNICTAQ 333 (954)
T ss_pred EEeeCcccCCCCCCCC-CCEEEEEECHHHHhhCCCCeee-eecccCCCcccccccccccccccccccc-----cccchHH
Confidence 99999999 543 3689999999998888755432 1111 112223555554 444432
Q ss_pred --HHHHHHH--HHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCe
Q 017726 257 --YGLRAAL--DLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNL 332 (367)
Q Consensus 257 --~al~~al--~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv 332 (367)
.++.+++ .++...|++++.++...++.++.+.|++.|+++..+ . ... .+.++++ .+..++.++|.++ ||
T Consensus 334 aL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~~~~~~--~-~f~-~~~~~~~--~~~~~i~~~l~~~-gi 406 (954)
T PRK05367 334 VLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRALGLEVVHD--S-FFD-TLTVEVG--GDAAAVLARALAA-GI 406 (954)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCcccCCC--C-CCC-eEEEeCC--CCHHHHHHHHHHC-Cc
Confidence 3333332 446778999999999999999999998888887654 2 222 4556663 3788999999755 98
Q ss_pred EEccCCCCCCCcEEEEeecCCCCHHHHHH
Q 017726 333 SLGLGLNKVAGKVFRIGHLGHLNEVMFNF 361 (367)
Q Consensus 333 ~v~~g~~~~~~~~iRi~~~~~~~~~~~~~ 361 (367)
.++... +..+|+|++-+++.+|+..
T Consensus 407 ~~~~~~----~~~l~is~~e~~t~~did~ 431 (954)
T PRK05367 407 NLRRVD----DDHVGISLDETTTREDLAA 431 (954)
T ss_pred eecccc----CCEEEEEecccCCHHHHHH
Confidence 874321 4579999988887765543
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-21 Score=163.85 Aligned_cols=307 Identities=13% Similarity=0.082 Sum_probs=197.8
Q ss_pred CChHHHHHHHccCC-CCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchH
Q 017726 19 HIPDQVIRAMNRNN-EDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSL 97 (367)
Q Consensus 19 ~~~~~v~~a~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~ 97 (367)
.+.++++++|.+.. .....|+.++...++++.++++++. ..++|++|||.++++++.+.++||+.||+....|...
T Consensus 11 g~~~~m~eam~~a~~~~~~~YG~D~~~~~~e~~~ae~~g~---~a~~Fv~sGT~aN~lal~~~~~~~~~vi~~~~aHi~~ 87 (342)
T COG2008 11 GPTPEMREALAAANAVGDDVYGEDPTTNALEQRIAELFGK---EAALFVPSGTQANQLALAAHCQPGESVICHETAHIYT 87 (342)
T ss_pred CCCHHHHHHHHhccccCCCCCCCCHHHHHHHHHHHHHhCC---ceEEEecCccHHHHHHHHHhcCCCCeEEEecccccee
Confidence 34577899999876 3355677778899999999999998 2489999999999999999999999999988766554
Q ss_pred HHHHHHHHhC-CceEEEeCCCCCCCCHHHHHHHHhccCC--CCccEEEEEecCCCcccccc---HHHHHHHHHhcCCCcE
Q 017726 98 LWIDQQQRLN-FNVDVVESDWGEGAKLDVLASKLAADTA--HTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPAL 171 (367)
Q Consensus 98 ~~~~~~~~~g-~~~~~v~~~~~~~~d~e~l~~~i~~~~~--~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~ 171 (367)
.-....+.++ +....+.-.+++.+++|++++.+..... ..+.++++.+.+|-.|+++| +++|.++||+ +|+.
T Consensus 88 ~E~Ga~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~--~~l~ 165 (342)
T COG2008 88 DECGAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKE--HGLP 165 (342)
T ss_pred cccCcHHHHcCCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHH--hCCc
Confidence 3122233333 3333333346889999999998885210 23445555555557799998 5568888898 9999
Q ss_pred EEEeeee---ccCceeeccc--cccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCc
Q 017726 172 FLVDGVS---SICAIDFRMD--EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTF 246 (367)
Q Consensus 172 vi~D~~~---~~~~~~~~~~--~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (367)
+++|++= +.-.+..+.. ..++|+++++++|.++.|. -++++++.++++++..++ +...|.
T Consensus 166 LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~-gAiv~gn~~~~~~a~~~r-------------K~~Ggl- 230 (342)
T COG2008 166 LHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPV-GAIVFGNRDFAKRARRWR-------------KRAGGL- 230 (342)
T ss_pred eeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCccee-eeEEEcCHHHHHHHHHHH-------------HHhccc-
Confidence 9999862 2211112221 2379999999999986454 499999999998886431 111111
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCCHHHHHHH
Q 017726 247 WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRR 325 (367)
Q Consensus 247 ~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 325 (367)
..-..+++.+ ++..+++.-......+..+.+..|.+.|++. |+++..+ ...+++++++++ ...+.
T Consensus 231 ----~~k~r~laA~-~~~~l~~~~~~~~~~Han~mA~~La~~~~~~~G~~~~~~----~~tN~vf~~l~~-----~~i~~ 296 (342)
T COG2008 231 ----MRKARFLAAQ-GLYALEDDVWRLAADHANAMAARLAEGLEAKPGVKLAFP----VETNMVFVRLPE-----SAIEA 296 (342)
T ss_pred ----HhhhhHHHHH-HHHHHhccHHHHHHHHHHHHHHHHHHhhhhcCCceeccC----CcccEEEEECCh-----HHHHH
Confidence 1111112222 3333333212222333344499999999975 9999886 233467788742 22244
Q ss_pred HHhhCCeEEccCCCCCCC-cEEEEeecCCCCHHHHH
Q 017726 326 AWQRYNLSLGLGLNKVAG-KVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 326 L~~~~gv~v~~g~~~~~~-~~iRi~~~~~~~~~~~~ 360 (367)
|... +.....|...... ..+|+.++-..+++|+.
T Consensus 297 l~~~-~~~~~~~~~~~~~~~~vRfvts~a~~~edv~ 331 (342)
T COG2008 297 LRLA-GALFYRGVLIGAHGEIVRFVTSWATSEEDVD 331 (342)
T ss_pred HHhh-chhheeeeeccCCCceEEEEeeccCCHHHHH
Confidence 4333 4333333222222 36999877766766665
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-21 Score=175.02 Aligned_cols=283 Identities=16% Similarity=0.131 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc---CC----CCCeEEEEeCCcchHHHHHHHHHhCCceE--
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT---LS----PGDRIISFLIGQFSLLWIDQQQRLNFNVD-- 111 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~---~~----~gd~vl~~~~~~~~~~~~~~~~~~g~~~~-- 111 (367)
.+...++++.+++++|.+ .+++++||++|+..++..+ .. ++++|+++++.|++.... +...+....
T Consensus 68 ~~~~~~l~~~la~~~g~~---~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~--~~~~~~~~~~~ 142 (379)
T TIGR00707 68 TEPQEELAEKLVEHSGAD---RVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMG--ALSATGQPKYQ 142 (379)
T ss_pred CHHHHHHHHHHHhhCCCC---EEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHH--HHHhcCChhhh
Confidence 366789999999999865 4899999999999888743 22 379999999987765321 111222111
Q ss_pred --EEeCCCCCCC----CHHHHHHHHhccCCCCccEEEEEecCCCcccc-cc---HHHHHHHHHhcCCCcEEEEeeeeccC
Q 017726 112 --VVESDWGEGA----KLDVLASKLAADTAHTIKAICIVHNETATGVT-NN---LSKVRKLLDEYRHPALFLVDGVSSIC 181 (367)
Q Consensus 112 --~v~~~~~~~~----d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~-~~---~~~i~~~~~~~~~~~~vi~D~~~~~~ 181 (367)
..+...+... |++++++.++ +++++|++++++|++|.. .+ +++|.++|++ +|+++++|++|+..
T Consensus 143 ~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~--~~~~~i~De~~~~~ 216 (379)
T TIGR00707 143 KGFEPLVPGFSYAPYNDIESLKKAID----DETAAVIVEPIQGEGGVNPASAEFLKALREICKD--KDALLIFDEVQTGI 216 (379)
T ss_pred ccCCCCCCCceeeCCCCHHHHHHHhh----hCeeEEEEEccccCCCCccCCHHHHHHHHHHHHH--cCCEEEEeccccCC
Confidence 1122222211 7899999987 467999998887788865 33 7889999999 99999999998732
Q ss_pred cee---e--ccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHH
Q 017726 182 AID---F--RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLL 256 (367)
Q Consensus 182 ~~~---~--~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (367)
... . .......|++ +++|.++++.++|++++++++++.+..... +. .++.+...+
T Consensus 217 ~~~g~~~~~~~~~~~~d~~--t~sK~~~~G~riG~~~~~~~~~~~~~~~~~----------------~~--~~~~~~~~~ 276 (379)
T TIGR00707 217 GRTGKFFAYEHYGIEPDII--TLAKGLGGGVPIGATLAKEEVAEAFTPGDH----------------GS--TFGGNPLAC 276 (379)
T ss_pred CccchhhhHHhcCCCCCEE--EEcccccCCcccEEEEEcHHHHhhhcCCCC----------------CC--CCCCCHHHH
Confidence 111 1 1112234655 458999755568999999998887764211 11 234566666
Q ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEcc
Q 017726 257 YGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGL 336 (367)
Q Consensus 257 ~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~ 336 (367)
.+..++++.+... +..++.+++++++++.|++.+....... ....+.++++.+++ +..++.+.|.++ ||.+.+
T Consensus 277 ~aa~aaL~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~g~~~~~~~~~--~~~~~~~~l~~~-Gv~v~~ 349 (379)
T TIGR00707 277 AAALAVLEVIEKE---RLLENVKEKGDYFKERLEELGKNYPNKE-VRGKGLMLGIELEA--PCKDIVKKALEK-GLLVNC 349 (379)
T ss_pred HHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHhhCCCCc-cccCceEEEEEecC--cHHHHHHHHHHC-CcEEee
Confidence 7777777776543 4566778888888888887532221110 00234467777743 467899988655 999987
Q ss_pred CCCCCCCcEEEEeecCCCCH--HHHHHhhhh
Q 017726 337 GLNKVAGKVFRIGHLGHLNE--VMFNFQLLF 365 (367)
Q Consensus 337 g~~~~~~~~iRi~~~~~~~~--~~~~~~~l~ 365 (367)
+. .+++|++++...+. .+....+|+
T Consensus 350 ~~----~~~lRi~~~~~~t~~~i~~~~~~l~ 376 (379)
T TIGR00707 350 AG----PKVLRFLPPLIITKEEIDEAVSALE 376 (379)
T ss_pred CC----CCEEEEECCCcCCHHHHHHHHHHHH
Confidence 42 36799997554443 444444443
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.9e-21 Score=188.43 Aligned_cols=303 Identities=14% Similarity=0.104 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHH---HHcc-CCCCC----eEEEEeCCcchHHHHHHHHHhCCceE
Q 017726 40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESA---LTNT-LSPGD----RIISFLIGQFSLLWIDQQQRLNFNVD 111 (367)
Q Consensus 40 ~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~---~~~~-~~~gd----~vl~~~~~~~~~~~~~~~~~~g~~~~ 111 (367)
..+...++.+++++++|.+.. -+..++|+.+.... ++.+ ..+|+ +|+++...|.++. ..+...|++++
T Consensus 540 ~l~~i~e~q~~l~eltG~d~~--sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp--~sa~~~G~~vv 615 (954)
T PRK05367 540 YRELIDQLEAWLAEITGYDAV--SLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNP--ASAVMAGMKVV 615 (954)
T ss_pred HHHHHHHHHHHHHHHHCCCCE--EECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhH--HHHHHCCCEEE
Confidence 456788999999999998852 24455565655333 3322 24555 5888988888865 33677899999
Q ss_pred EEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceee-ccccc
Q 017726 112 VVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF-RMDEW 190 (367)
Q Consensus 112 ~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~-~~~~~ 190 (367)
.++++.++.+|+++|+++++++. .++.+|++++|++..+...|+++|+++||+ +|+++++|+++..+...+ +....
T Consensus 616 ~v~~d~~G~iD~~~L~~~i~~~~-~~la~V~it~pst~G~~e~~I~eI~~i~h~--~G~~v~VDgA~~~al~~l~~pg~~ 692 (954)
T PRK05367 616 VVACDENGNIDLDDLRAKAEEHA-DNLAAIMITYPSTHGVFEETIREICEIVHE--HGGQVYLDGANMNAQVGLARPGDI 692 (954)
T ss_pred EECCCCCCCcCHHHHHHHHhccC-CCeEEEEEEcCCCCeeecCCHHHHHHHHHH--cCCEEEEECcChhhccCCCChhhc
Confidence 99998889999999999998643 357788888887764445789999999999 999999999997554333 33457
Q ss_pred cceEEEecCCCcccCC-----CcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcH---HHHHHHHHH
Q 017726 191 GIDVALTGSQKALSLP-----TGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSI---QLLYGLRAA 262 (367)
Q Consensus 191 ~~d~~~~s~~K~~~g~-----~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~al~~a 262 (367)
|+|++++++||||++| +|+|++++++.+...+.......... .. ..|. ..+.++ ..+...+..
T Consensus 693 GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~------~~-~~g~--v~ta~~g~al~~~~a~~y 763 (954)
T PRK05367 693 GADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGG------ET-GIGA--VSAAPFGSASILPISWMY 763 (954)
T ss_pred CCCEEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCC------CC-CcCc--chhHHHHHHHHHHHHHHH
Confidence 8999999999999655 44679999876655554332110000 00 0011 112222 222223344
Q ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEE-cCC--CCCHHHHHHHHHhhCCeEEccCC
Q 017726 263 LDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVI-VPS--HINSSEIVRRAWQRYNLSLGLGL 338 (367)
Q Consensus 263 l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~l~~~L~~~~gv~v~~g~ 338 (367)
+..+..+|++++.++...+++++.++|++. .+....+......-.++.++ ++. +.+..++.++|. ++|+....-.
T Consensus 764 i~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~g~~~~di~krL~-d~G~~~~t~~ 842 (954)
T PRK05367 764 IRMMGAEGLRQATEVAILNANYIAKRLKDHYPVLYTGANGRVAHECILDLRPLKESTGITVDDIAKRLI-DYGFHAPTMS 842 (954)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCCcccceEEEeecccccCCCCHHHHHHHHH-HCCCeEeecC
Confidence 455556678888888889999999999884 44333322221222233332 222 456789999995 5698776422
Q ss_pred CCCCCcEEEEeecCCCCHHHHH
Q 017726 339 NKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 339 ~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
.+ ..+.+||++.-..+.+|++
T Consensus 843 ~p-v~~~l~i~ptE~~s~~elD 863 (954)
T PRK05367 843 FP-VAGTLMVEPTESESKAELD 863 (954)
T ss_pred Cc-cCCEEEEEeeecCCHHHHH
Confidence 22 2567888877776665544
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-21 Score=173.93 Aligned_cols=271 Identities=20% Similarity=0.219 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCC-CC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESD-WG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~ 118 (367)
....+++++.+++++|.+. ++.++|||.|+.+++.++ +.+||+|+++...+.+. .......|++++.++++ .+
T Consensus 24 g~~~~~fE~~~a~~~g~~~---~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~--~~ai~~~G~~pv~~Di~~~~ 98 (363)
T PF01041_consen 24 GPYVEEFEKEFAEYFGVKY---AVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPAT--ASAILWAGAEPVFVDIDPET 98 (363)
T ss_dssp SHHHHHHHHHHHHHHTSSE---EEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THH--HHHHHHTT-EEEEE-BETTT
T ss_pred CHHHHHHHHHHHHHhCCCe---EEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHH--HHHHHHhccEEEEEeccCCc
Confidence 4778899999999999655 788899999999999875 57999999998766654 35577899999999998 56
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeec--cccccceEEE
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR--MDEWGIDVAL 196 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~--~~~~~~d~~~ 196 (367)
+.+|++.++++++ +++|+|+++|. .|...|+++|.++|++ +|++||.|++|++|+..-. +... -|+.+
T Consensus 99 ~~id~~~~~~~i~----~~t~ai~~~h~---~G~~~d~~~i~~~~~~--~~i~lIeD~a~a~g~~~~g~~~G~~-gd~~~ 168 (363)
T PF01041_consen 99 LNIDPEALEKAIT----PKTKAILVVHL---FGNPADMDAIRAIARK--HGIPLIEDAAQAFGARYKGRPVGSF-GDIAI 168 (363)
T ss_dssp SSB-HHHHHHHHH----TTEEEEEEE-G---GGB---HHHHHHHHHH--TT-EEEEE-TTTTT-EETTEETTSS-SSEEE
T ss_pred CCcCHHHHHHHhc----cCccEEEEecC---CCCcccHHHHHHHHHH--cCCcEEEccccccCceeCCEeccCC-CCceE
Confidence 7899999999999 57799999985 7999999999999999 9999999999999874311 1122 37777
Q ss_pred ecC--CCcccCCCcceeeeeC-HHHHHHhccCCCCceeechHHHHHHhh----cCCccCCCCcHHHHHHHHHHHHHHHHh
Q 017726 197 TGS--QKALSLPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYN----LGTFWPYTPSIQLLYGLRAALDLIFEE 269 (367)
Q Consensus 197 ~s~--~K~~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~al~~al~~~~~~ 269 (367)
+|+ .|.+.++.| |+++.+ +++.+++......+...+ . ..++. .|. .+-++ .+.+++...+-.
T Consensus 169 fSf~~~K~i~~geG-G~v~~~~~~~~~~~~~~~~~g~~~~--~-~~~~~~~~~~g~--n~rm~-----~~~AAigl~QL~ 237 (363)
T PF01041_consen 169 FSFHPTKIITTGEG-GAVVTNDPELAERARALRNHGRSRD--A-FRRYRHELPPGY--NFRMS-----ELQAAIGLAQLK 237 (363)
T ss_dssp EESSTTSSS-SSS--EEEEESTHHHHHHHHHHTBTTEETS--E-CSTTEESSSS----B-B-B-----HHHHHHHHHHHH
T ss_pred ecCCCCCCCcCCCC-eeEEecHHHHHHHhhhhhccCcCcc--c-cccccccccCCc--ccccH-----HHHHHHHHHHHH
Confidence 775 599976666 777765 555666654433222110 0 00000 010 11122 345565555555
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHc-CCccccC-CCcc-CCCceEEEEcCCC--CCHHHHHHHHHhhCCeEEccCC
Q 017726 270 GLENVIERHRRLGKATRLAVEAW-GLKNCTQ-KEEW-FSDTVTAVIVPSH--INSSEIVRRAWQRYNLSLGLGL 338 (367)
Q Consensus 270 g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~-~~~~~~~~~~~~~--~~~~~l~~~L~~~~gv~v~~g~ 338 (367)
.+++..++.+++++.+.+.|++. ++..... .... ..+..+.+.+++. .+.+++.+.|.++ ||.+...+
T Consensus 238 ~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~rd~l~~~L~~~-GI~~~~~~ 310 (363)
T PF01041_consen 238 RLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEALADRDELVEALRAR-GIETRPHY 310 (363)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGCSTHHHHHHHHHHT-TBEEBCST
T ss_pred HhhhhHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccccccccchHHHHHHHHHHC-CCcccccc
Confidence 57888889999999999999998 5544332 2221 3555667777543 3578999999766 99998766
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.9e-21 Score=171.04 Aligned_cols=283 Identities=19% Similarity=0.157 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.+....+++.++++.|... +++++||..|+..++.+++.+||+|+++..-|.+.+ +.......|+++..++..
T Consensus 54 nPt~~~le~~la~Le~g~~---a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~-- 128 (386)
T PF01053_consen 54 NPTVRALEQRLAALEGGED---ALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPT-- 128 (386)
T ss_dssp -HHHHHHHHHHHHHHT-SE---EEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTT--
T ss_pred cccHHHHHHHHHHhhcccc---eeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcEEEEeCch--
Confidence 4677899999999998643 566799999999999999999999999998877764 445567789999988754
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCC-cEEEEeeeeccCceeeccccccceEEEe
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHP-ALFLVDGVSSICAIDFRMDEWGIDVALT 197 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~-~~vi~D~~~~~~~~~~~~~~~~~d~~~~ 197 (367)
|+++++++++ +++++|++.+|.||+..+.|+++|+++||+ +| +++++|.+.+.+. ..+.-..|+|+++.
T Consensus 129 ---d~~~l~~~l~----~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~--~g~~~~vVDnT~atp~-~~~pL~~GaDivv~ 198 (386)
T PF01053_consen 129 ---DLEALEAALR----PNTKLVFLESPSNPTLEVPDLEAIAKLAKE--HGDILVVVDNTFATPY-NQNPLELGADIVVH 198 (386)
T ss_dssp ---SHHHHHHHHC----TTEEEEEEESSBTTTTB---HHHHHHHHHH--TTT-EEEEECTTTHTT-TC-GGGGT-SEEEE
T ss_pred ---hHHHHHhhcc----ccceEEEEEcCCCcccccccHHHHHHHHHH--hCCceEEeecccccee-eeccCcCCceEEEe
Confidence 7999999998 477999999999999999999999999999 88 9999999876543 23444568999999
Q ss_pred cCCCcccCCCc--ceeeeeCH--HHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHH
Q 017726 198 GSQKALSLPTG--MGIVCASP--KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLEN 273 (367)
Q Consensus 198 s~~K~~~g~~g--~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~ 273 (367)
|.+|+++|... .|.++.++ ++.+++.... + ..|. +++.. .+.+-...-.-+.-
T Consensus 199 S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~-------------~-~~G~----~~~p~-----da~ll~rgl~Tl~~ 255 (386)
T PF01053_consen 199 SATKYLSGHSDVMGGAVVVNGSSELYDRLREFR-------------R-LLGA----TLSPF-----DAWLLLRGLRTLPL 255 (386)
T ss_dssp ETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHH-------------H-HHT-----B--HH-----HHHHHHHHHTTHHH
T ss_pred eccccccCCcceeeEEEEECchhhhhhhhcchh-------------h-hcCc----cchHH-----HHHHHhcCCCcHHH
Confidence 99999987654 37777665 6665554221 1 1121 23332 21221212222677
Q ss_pred HHHHHHHHHHHHHHHHHHc-CCc-cccCC----Cc--------cCCCceEEEEcCCCC-CHHHHHHHHHhhCCeEEccC-
Q 017726 274 VIERHRRLGKATRLAVEAW-GLK-NCTQK----EE--------WFSDTVTAVIVPSHI-NSSEIVRRAWQRYNLSLGLG- 337 (367)
Q Consensus 274 ~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----~~--------~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~v~~g- 337 (367)
+.++..+++..+.+.|++. .+. +.-|. +. ...+.++.|.+..+. ....|.+.|+ -..+.+.-|
T Consensus 256 R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~~~~~~f~~~l~-l~~~~~SlGg 334 (386)
T PF01053_consen 256 RMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGEEAARRFLDALK-LFSIAPSLGG 334 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHHHHHHHHHHH-S-SSEESSS-SS
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccchhhhHhHHhhhh-hHhhhhhcCC
Confidence 8889999999999999997 442 32221 10 123348999985332 2344555552 211111111
Q ss_pred CC----------------------CCCCcEEEEeecCCCCHHHHHHhh
Q 017726 338 LN----------------------KVAGKVFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 338 ~~----------------------~~~~~~iRi~~~~~~~~~~~~~~~ 363 (367)
.. ...++.+|+| .|-++.+|++..+
T Consensus 335 ~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlS-vGlEd~~dLi~Dl 381 (386)
T PF01053_consen 335 VESLISHPASTSHRSLSPEERAEAGISDGLIRLS-VGLEDPDDLIADL 381 (386)
T ss_dssp SS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE---SS-HHHHHHHH
T ss_pred cccccccccchhhccCChhhhhccCCCCCeeEEE-eccCCHHHHHHHH
Confidence 11 0123569998 5777777776654
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-20 Score=173.96 Aligned_cols=294 Identities=17% Similarity=0.154 Sum_probs=193.2
Q ss_pred hHHHHHHHccCCCC--CCC-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC---------CC-CeE
Q 017726 21 PDQVIRAMNRNNED--YRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS---------PG-DRI 87 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~---------~g-d~v 87 (367)
.+.+.+++.+.... +.+ ........++.+.++++++.+ .+++++||++|++.++..... +| ++|
T Consensus 59 ~~~i~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~v 135 (401)
T PRK00854 59 HPKILAAMVEQAGRLTLTSRAFRNDQLAPLYEELAALTGSH---KVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEI 135 (401)
T ss_pred CHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCCCC---EEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceE
Confidence 45566666554322 111 112356778999999998753 489999999999998876531 23 678
Q ss_pred EEEeCCcchHHHHHHHHHhC-------------CceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc
Q 017726 88 ISFLIGQFSLLWIDQQQRLN-------------FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN 154 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~ 154 (367)
++....|++..... . ..+ ..+..++. .|++++++++. +++++|++++++||+|.+.
T Consensus 136 i~~~~~~HG~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~i~----~~~~aii~e~~~~~~G~~~ 204 (401)
T PRK00854 136 IVCADNFHGRTLSI-V-GFSTDPDARGGFGPFTPGFRVVPF-----GDAEALEAAIT----PNTVAFLVEPIQGEAGVII 204 (401)
T ss_pred EEECCCcCCccHHH-H-hccCCccccccCCCCCCCeEEeCC-----CCHHHHHHHhC----CCeEEEEEccccCCCCCcC
Confidence 88888777753211 1 111 12233322 37899999987 4679999999999999998
Q ss_pred c----HHHHHHHHHhcCCCcEEEEeeeec-cCcee--e--ccccccceEEEecCCCcccCCC-cceeeeeCHHHHHHhcc
Q 017726 155 N----LSKVRKLLDEYRHPALFLVDGVSS-ICAID--F--RMDEWGIDVALTGSQKALSLPT-GMGIVCASPKALEASKT 224 (367)
Q Consensus 155 ~----~~~i~~~~~~~~~~~~vi~D~~~~-~~~~~--~--~~~~~~~d~~~~s~~K~~~g~~-g~g~~~~~~~~~~~~~~ 224 (367)
| +++|+++|++ +|+++|+|++|+ ++... + .......|++++ +|++++.. .+|++++++++++.+..
T Consensus 205 ~~~~~l~~l~~l~~~--~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~--~K~l~gg~~~ig~v~~~~~~~~~l~~ 280 (401)
T PRK00854 205 PPAGYFTRVRELCTA--NNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLI--GKALSGGFYPVSAVLSNSEVLGVLKP 280 (401)
T ss_pred CCHHHHHHHHHHHHH--cCCEEEEechhhCCCCCchHhHHhhcCCCCCEEEe--cccccCCccCeEEEEEcHHHHhcccC
Confidence 7 8999999999 999999999997 43321 1 112234688776 49997652 46889999998876643
Q ss_pred CCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccC
Q 017726 225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWF 304 (367)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 304 (367)
... +. .+..+...+++..++|+.+.+.+ ..++.+++++++.+.|++++........ .
T Consensus 281 ~~~----------------~~--t~~~~~~~~aa~~a~L~~l~~~~---~~~~~~~~~~~l~~~L~~~~~~~~~~~~--g 337 (401)
T PRK00854 281 GQH----------------GS--TFGGNPLACAVARAALKVLTEEG---MIENAAEMGAYFLEGLRSIRSNIVREVR--G 337 (401)
T ss_pred CCC----------------CC--CCCcCHHHHHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHhhccCceEEEe--c
Confidence 110 11 22345556677777887766543 4567888999999999987543221101 1
Q ss_pred CCceEEEEc-CCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 305 SDTVTAVIV-PSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 305 ~~~~~~~~~-~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
.+.++.+.+ ++..+..++++.|.++ ||.+.+. .+.++|++++...+++++.
T Consensus 338 ~g~~~~i~~~~~~~~~~~~~~~L~~~-GV~v~~~----~~~~lR~~p~~~~t~e~i~ 389 (401)
T PRK00854 338 RGLMLAVELEPEAGGARQYCEALKER-GLLAKDT----HDHTIRLAPPLVITREQVD 389 (401)
T ss_pred cceEEEEEEecCchhHHHHHHHHHHC-CeEEecC----CCCEEEEeCCcccCHHHHH
Confidence 233444444 3333567899999765 9998642 2368999987666655443
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=182.17 Aligned_cols=311 Identities=14% Similarity=0.056 Sum_probs=198.1
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC--------CCCCeEEEEeCCcchHHHHHHHHHhCCc
Q 017726 38 PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--------SPGDRIISFLIGQFSLLWIDQQQRLNFN 109 (367)
Q Consensus 38 ~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~ 109 (367)
.+..+...+++++++++.|.+... +.-++|+.+....++++. ...++|+++...|.++.. .+...|++
T Consensus 539 QG~lq~i~elq~~l~eLtGmd~~S--l~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpa--sa~~~Gie 614 (954)
T PRK12566 539 EGYRAMIDELEAWLCAITGFDAIC--MQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPA--SAQMAGMR 614 (954)
T ss_pred cCHHHHHHHHHHHHHHHHCCCeEe--ecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHH--HHHHCCCE
Confidence 346778899999999999998742 555577766655444421 124577888888877642 26678999
Q ss_pred eEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeec-cc
Q 017726 110 VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR-MD 188 (367)
Q Consensus 110 ~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~-~~ 188 (367)
++.++.++++.+|+++|++++++.. +++++|++++|++-.+...|+++|+++||+ +|++|++|+++..+...++ ..
T Consensus 615 Vv~Vp~D~~G~iDle~L~a~I~~~~-~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~--~Galv~vDgA~~~a~~~l~~Pg 691 (954)
T PRK12566 615 VVIVECDPDGNVDLDDLKAKAAAAG-DRLSCLMITYPSTHGVYEEGIREICEVVHQ--HGGQVYMDGANLNAQVGLARPA 691 (954)
T ss_pred EEEeccCCCCCcCHHHHHHHhhccC-CCEEEEEEEecCcCceecchHHHHHHHHHH--cCCEEEEEeeChhhccCCCChh
Confidence 9999998889999999999998543 477888888888777776789999999999 9999999999987666555 46
Q ss_pred cccceEEEecCCCcccCCCcceeeeeCH-HHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH
Q 017726 189 EWGIDVALTGSQKALSLPTGMGIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF 267 (367)
Q Consensus 189 ~~~~d~~~~s~~K~~~g~~g~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~ 267 (367)
++|+|++++++||||++|.|.|..++.+ ...+.+.+.....-..+... .+-+.++. .. ....+...+..++.++.
T Consensus 692 ~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G--~~~r~ga~-S~-~~~gsa~~l~~A~~Yi~ 767 (954)
T PRK12566 692 DIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEG--PDPNNGAV-SA-APWGSASILPISWMYIA 767 (954)
T ss_pred hcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCC--CCCCCCce-ee-cccchHHHHHHHHHHHH
Confidence 7899999999999998887765554444 33332222111000000000 00011221 11 11111122333444444
Q ss_pred HhC--hHHHHHHHHHHHHHHHHHHHHc-CCccccCCCcc-CCCceEEEEcC--CCCCHHHHHHHHHhhCCeEEccCCCCC
Q 017726 268 EEG--LENVIERHRRLGKATRLAVEAW-GLKNCTQKEEW-FSDTVTAVIVP--SHINSSEIVRRAWQRYNLSLGLGLNKV 341 (367)
Q Consensus 268 ~~g--~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~l~~~L~~~~gv~v~~g~~~~ 341 (367)
..| +.+..+....+++|+.++|++. ++...++++.. +...+..+.++ .+.+.+++.++|. ++||....-..+
T Consensus 768 ~lG~eLk~aa~~ailnAnYla~rL~~~~~v~~~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~-d~Gihapt~~fP- 845 (954)
T PRK12566 768 MMGPQLADASEVAILSANYLANQLGGAFPVLYRGRNERVAHECILDLRPLKAQTGISEEDVAKRLM-DYGFHAPTMSFP- 845 (954)
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHhHhhCCCCcCCCCCCeeeEEEEEccccccccCCCHHHHHHHHH-HCCcEEeEEeec-
Confidence 444 5555666678999999999883 44332211110 11111112222 2467788999998 668876542223
Q ss_pred CCcEEEEeecCCCCHHHHHH
Q 017726 342 AGKVFRIGHLGHLNEVMFNF 361 (367)
Q Consensus 342 ~~~~iRi~~~~~~~~~~~~~ 361 (367)
..+.+||+..-+++.+|+++
T Consensus 846 v~~~LmIepTE~eskeEIDr 865 (954)
T PRK12566 846 VPGTLMVEPTESESKAELDR 865 (954)
T ss_pred cCCEEEEEeeeeCCHHHHHH
Confidence 35679999888777665443
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.4e-21 Score=157.50 Aligned_cols=307 Identities=15% Similarity=0.161 Sum_probs=213.5
Q ss_pred CChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC-CCCCeEEEEeCCcchH
Q 017726 19 HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-SPGDRIISFLIGQFSL 97 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~-~~gd~vl~~~~~~~~~ 97 (367)
.+..++.++|.+......-|+......++++..|+++|-+. .+|++|||.+++++++.-+ ++|.+||+-+..|...
T Consensus 33 ~PTdeMr~am~eA~vgDdVyGeD~tt~rLE~~vA~l~GKEA---gLFv~SGTmgNllaIm~Hc~~rg~eii~gd~~HI~~ 109 (384)
T KOG1368|consen 33 VPTDEMRRAMAEASVGDDVYGEDPTTNRLEQRVAELFGKEA---GLFVPSGTMGNLLAIMVHCHQRGSEIIVGDRAHIHR 109 (384)
T ss_pred CChHHHHHHHhhcccCcccccCCccHHHHHHHHHHHhCccc---eeeecccccccHHHHHHHhcCCCceEEeccchheee
Confidence 44677888888876665545555677899999999999776 5899999999999998854 5899999887765543
Q ss_pred H-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccC----CCCccEEEEEecCCCcc-ccccHH---HHHHHHHhcCC
Q 017726 98 L-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT----AHTIKAICIVHNETATG-VTNNLS---KVRKLLDEYRH 168 (367)
Q Consensus 98 ~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~----~~~~~lv~~~~~~n~tG-~~~~~~---~i~~~~~~~~~ 168 (367)
. ...++...|+.++.+..++++.+|++++++++.... .+.+++|++.+-+|.+| .++|++ ++.++|++ |
T Consensus 110 ~E~gg~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~--~ 187 (384)
T KOG1368|consen 110 YEQGGISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKR--H 187 (384)
T ss_pred hhccChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhc--c
Confidence 2 234567788999999988999999999999998421 15789999999998888 888865 57888888 9
Q ss_pred CcEEEEeeeecc---Cceeeccccc--cceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhc
Q 017726 169 PALFLVDGVSSI---CAIDFRMDEW--GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL 243 (367)
Q Consensus 169 ~~~vi~D~~~~~---~~~~~~~~~~--~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (367)
|+.+++|++--+ -+..+++..+ .+|.+..++||.++.|-| ++++++++++++....+ +.+ .
T Consensus 188 glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAPVG-SViVG~k~FI~kA~~~R------------Kal-G 253 (384)
T KOG1368|consen 188 GLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPVG-SVIVGSKDFIDKARHFR------------KAL-G 253 (384)
T ss_pred CCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCcc-cEEEccHHHHHHHHHHH------------HHh-c
Confidence 999999987321 1222333332 479999999999987776 89999999988765221 111 1
Q ss_pred CCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEc-CCCCCHHH
Q 017726 244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV-PSHINSSE 321 (367)
Q Consensus 244 ~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 321 (367)
|+ .--.++.+ .+++-.+++. +. ..++-.+.+..+.+.+.+. ++.+..+.- ..+ ++.+.+ -.++++++
T Consensus 254 GG-----mRQsGvLa-aaaLval~~~-~~-~L~~dHk~A~~lAe~~~~~~~i~v~v~a~--etN-iv~~~l~q~~~~~~~ 322 (384)
T KOG1368|consen 254 GG-----MRQSGVLA-AAALVALDEN-VP-LLRADHKRAKELAEYINTPEEIRVEVPAV--ETN-IVNMVLCQARLTAEE 322 (384)
T ss_pred Cc-----hhHHHHHH-HHHHHHhhcc-hH-HHHHHHHHHHHHHHHhccccceeeecchh--hcc-eeeeecccccCCHHH
Confidence 22 11111122 2233333332 33 3445566777778888777 466655421 243 333333 24678999
Q ss_pred HHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 322 IVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 322 l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
|++.+ +++||.+.++.. ..+||.++.-.++++..
T Consensus 323 l~~~~-~k~gi~lm~~~s----~r~Rivlh~Qvt~~~ve 356 (384)
T KOG1368|consen 323 LCKFL-EKNGILLMGGAS----RRIRIVLHHQVTDEDVE 356 (384)
T ss_pred HHHHH-HHCCeEEeeccc----cceEEEEEEecCHHHHH
Confidence 99999 466998876543 34999988877766554
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-20 Score=169.84 Aligned_cols=301 Identities=17% Similarity=0.110 Sum_probs=193.1
Q ss_pred hHHHHHHHccCCCC--CCCCc-HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC----------CCCCeE
Q 017726 21 PDQVIRAMNRNNED--YRSPA-VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL----------SPGDRI 87 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~~~~-~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~----------~~gd~v 87 (367)
++.+.+++.+.... +.+.. ..+...++++.++++.+.+ .+++++||++|+..++.... ..+++|
T Consensus 49 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~v 125 (400)
T PTZ00125 49 HPKILAALINQAQKLTLTSRAFYNDVLGLAEKYITDLFGYD---KVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKI 125 (400)
T ss_pred CHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHhCCCCC---EEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeE
Confidence 56677777765321 22221 2456788899998887653 48899999999999887542 135789
Q ss_pred EEEeCCcchHHHHHHHHHhCCceE--EEeCCCC----CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----HH
Q 017726 88 ISFLIGQFSLLWIDQQQRLNFNVD--VVESDWG----EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LS 157 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~~~~--~v~~~~~----~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~ 157 (367)
++.+.+|++..+.......+.... ..+...+ ...|++++++.++. +++++|++.+++|++|.+.| ++
T Consensus 126 l~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~v~~ep~~~~~G~~~~~~~~l~ 202 (400)
T PTZ00125 126 IFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQD---PNVAAFIVEPIQGEAGVIVPDDGYLK 202 (400)
T ss_pred EEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCC---CCeEEEEEcCccCCCCCccCCHHHHH
Confidence 999888888654322221111110 0000000 11389999999862 46899999999999999997 99
Q ss_pred HHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCC-cceeeeeCHHHHHHhccCCCCcee
Q 017726 158 KVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPT-GMGIVCASPKALEASKTAKSVRVF 231 (367)
Q Consensus 158 ~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~-g~g~~~~~~~~~~~~~~~~~~~~~ 231 (367)
+|.++|++ +|+++|+|++|+.... ..+......|++++ +|+++++. ++|++++++++++.+.....
T Consensus 203 ~l~~l~~~--~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~~~--sK~l~~g~~~ig~v~~~~~~~~~~~~~~~---- 274 (400)
T PTZ00125 203 QVYELCKK--YNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVLL--GKALSGGLYPISAVLANDDVMLVIKPGEH---- 274 (400)
T ss_pred HHHHHHHH--cCCEEEEeccccCCCccchhhHHHhcCCCCCEEEE--cccccCCCcCcEEEEEcHHHHhhccCCCC----
Confidence 99999999 9999999999863221 12222234577765 59997653 68999999999887753211
Q ss_pred echHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CC-ccccCCCccCCCceE
Q 017726 232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GL-KNCTQKEEWFSDTVT 309 (367)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~~~~~~~~~~~ 309 (367)
+. .+..+...+.+..++++.+.++++ .++..++.+++++.|+++ +. .....-. ..+.++
T Consensus 275 ------------~~--t~~~~~~~~~aa~~~l~~i~~~~~---~~~~~~~~~~l~~~l~~l~~~~~~~~~~~--~~g~~~ 335 (400)
T PTZ00125 275 ------------GS--TYGGNPLACAVAVEALEVLKEEKL---AENAQRLGEVFRDGLKELLKKSPWVKEIR--GKGLLN 335 (400)
T ss_pred ------------CC--CCCcCHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHhcCCCeEEEe--cccEEE
Confidence 11 122444455666677877766554 345566777888888774 21 1111101 134466
Q ss_pred EEEcCC--CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 310 AVIVPS--HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 310 ~~~~~~--~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
++.++. ..+..++++.|.++ ||.+.++ .+.++||++....+++++
T Consensus 336 ~v~~~~~~~~~~~~~~~~l~~~-Gv~v~~~----~~~~lRi~~~~~~~~~~i 382 (400)
T PTZ00125 336 AIVFDHSDGVNAWDLCLKLKEN-GLLAKPT----HDNIIRFAPPLVITKEQL 382 (400)
T ss_pred EEEEccCcchHHHHHHHHHHHC-CeEEeec----CCCEEEEECCccCCHHHH
Confidence 666642 34567899999754 9999764 246899998765655443
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.6e-20 Score=168.15 Aligned_cols=298 Identities=16% Similarity=0.120 Sum_probs=191.6
Q ss_pred hHHHHHHHccCCCC--CCC-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC---------CCC-CeE
Q 017726 21 PDQVIRAMNRNNED--YRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL---------SPG-DRI 87 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~---------~~g-d~v 87 (367)
.+.+.+++.+.... +.+ ....+...++.++++++.+. +.+++++||++|+..++.... .+| ++|
T Consensus 58 ~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~i 134 (396)
T PRK04073 58 HPKIIQALKDQADKVTLTSRAFHSDQLGPWYEKVAKLTGK---DMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEI 134 (396)
T ss_pred CHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhcCCC---CeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEE
Confidence 45566666554322 111 11234566788888888764 358999999999999887532 133 678
Q ss_pred EEEeCCcchHHHHHHHHHhCC------------ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc
Q 017726 88 ISFLIGQFSLLWIDQQQRLNF------------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN 155 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~ 155 (367)
+..+.+|++..... ....+. .+..++.+ |+++++++++ +++++|++++++||+|.+.|
T Consensus 135 i~~~~~~HG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~i~----~~~~~viiep~~~~~G~~~~ 204 (396)
T PRK04073 135 IACEGNFHGRTMAA-VSLSSEEEYKRGFGPMLPGIKKIPYG-----DLEALKAAIT----PNTAAFLVEPIQGEAGINIP 204 (396)
T ss_pred EEECCCcCCCCHHH-HhhcCCcccccCCCCCCCCceEeCCC-----CHHHHHHhcc----cCeEEEEEcCccCCCCCccC
Confidence 88877777753211 111111 11223222 7899999886 46799999999999999986
Q ss_pred ----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCC-CcceeeeeCHHHHHHhccC
Q 017726 156 ----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTA 225 (367)
Q Consensus 156 ----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~~~ 225 (367)
+++|.++|++ +|+++|+|++|+.... ..+......|++++ +|.++++ ..+|++++++++++.+...
T Consensus 205 ~~~~l~~l~~l~~~--~g~lli~DEv~~g~g~~g~~~~~~~~~~~pdi~~~--sK~lg~gg~~ig~~~~~~~i~~~~~~~ 280 (396)
T PRK04073 205 PEGFLKAARELCKE--ENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYIL--GKALGGGVFPISCVAANRDILGVFTPG 280 (396)
T ss_pred CHHHHHHHHHHHHH--cCCEEEEecchhCCCcCcHHHHhhhcCCCCCEEEe--cccccCCCCcceEEEEcHHHHhhhcCC
Confidence 7899999999 9999999999874321 11223334677765 6988654 3479999999988776532
Q ss_pred CCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCC
Q 017726 226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFS 305 (367)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 305 (367)
.. +. .+..+...+++..++|+.+.+++ ..++..++++++.+.|++++...+..-. ..
T Consensus 281 ~~----------------~~--t~~~~~~~~aaa~aaL~~~~~~~---l~~~~~~~~~~l~~~L~~l~~~~i~~~~--~~ 337 (396)
T PRK04073 281 SH----------------GS--TFGGNPLACAVSIAALEVLEEEK---LPERSLELGEYFKEQLKEIDNPMIKEVR--GR 337 (396)
T ss_pred CC----------------CC--CCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhhcCCccccee--cc
Confidence 11 11 23355666666777887776654 3456677899999999887433222111 12
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHH--HHHHhhhh
Q 017726 306 DTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV--MFNFQLLF 365 (367)
Q Consensus 306 ~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~--~~~~~~l~ 365 (367)
+.++.+.++ .+..+++++|.++ ||.+.+. .+++|||++....+++ |...++|+
T Consensus 338 g~~~~~~~~--~~~~~~~~~l~~~-Gv~~~~~----~~~~iRi~p~l~~t~e~i~~~~~~l~ 392 (396)
T PRK04073 338 GLFIGVELN--EPARPYCEALKEE-GLLCKET----HETVIRFAPPLVITKEELDWAFEKIK 392 (396)
T ss_pred eEEEEEEec--chHHHHHHHHHHC-CeEEecC----CCCEEEEECCcccCHHHHHHHHHHHH
Confidence 345666663 2467899998755 9998752 2368999975555544 44444443
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-20 Score=170.76 Aligned_cols=273 Identities=16% Similarity=0.174 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc---------CCCCCeEEEEeCCcchHHHHHHHHHhCCceEE
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT---------LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDV 112 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~---------~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~ 112 (367)
....++++.+++++|.+. +++++|||+|+..++.++ +.+||+|+++.++|.+.. ..+...|++++.
T Consensus 63 ~~~~~fe~~lA~~~g~~~---~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~--~~v~~~G~~pv~ 137 (438)
T PRK15407 63 RFNDAFEKKLAEFLGVRY---ALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTV--NPIIQNGLVPVF 137 (438)
T ss_pred hhHHHHHHHHHHHhCCCe---EEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHH--HHHHHcCCEEEE
Confidence 457799999999999753 788899999999888754 578999999999877654 345668999999
Q ss_pred EeCC-CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeec--ccc
Q 017726 113 VESD-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR--MDE 189 (367)
Q Consensus 113 v~~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~--~~~ 189 (367)
++++ .++.+|++.++++++ +++|+|+++++ .|...++++|.++|++ +|++||+|++|++|+..-+ ...
T Consensus 138 vdvd~~~~~id~~~le~~i~----~~tkaVi~~~~---~G~p~dl~~I~~la~~--~gi~vIeDaa~a~G~~~~g~~~G~ 208 (438)
T PRK15407 138 VDVELPTYNIDASLLEAAVS----PKTKAIMIAHT---LGNPFDLAAVKAFCDK--HNLWLIEDNCDALGSTYDGRMTGT 208 (438)
T ss_pred EecCCCcCCcCHHHHHHHcC----cCCeEEEEeCC---CCChhhHHHHHHHHHH--CCCEEEEECccchhhhcCCeeeec
Confidence 9887 457789999999987 47799999874 7888899999999999 9999999999998875422 222
Q ss_pred ccceEEEecC--CCcccCCCcceeeeeCHHH-HHHhccCCCCcee------ec------hH----HH----HHHh---hc
Q 017726 190 WGIDVALTGS--QKALSLPTGMGIVCASPKA-LEASKTAKSVRVF------FD------WK----DY----IKFY---NL 243 (367)
Q Consensus 190 ~~~d~~~~s~--~K~~~g~~g~g~~~~~~~~-~~~~~~~~~~~~~------~~------~~----~~----~~~~---~~ 243 (367)
.| |+.++|+ .|.+.+..| |+++.+++. .+++......+.. .+ .. .. ...+ ..
T Consensus 209 ~g-d~~~fSf~~~k~~~~geG-G~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (438)
T PRK15407 209 FG-DIATLSFYPAHHITMGEG-GAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHL 286 (438)
T ss_pred cC-ceEEEeCCCCCCccccCc-eEEEECCHHHHHHHHHHHHhCccccccccccccccccccccccccccccccccccccc
Confidence 22 6666664 477876666 777766555 4333322111100 00 00 00 0000 01
Q ss_pred CCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCcccc--CCCccCCCceEEEEcCC--CCC
Q 017726 244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCT--QKEEWFSDTVTAVIVPS--HIN 318 (367)
Q Consensus 244 ~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~~~~~~~~~~~~~~~--~~~ 318 (367)
|. .+.+ --+.+|+...+-..++++.++.+++++++.+.|++. +..... +.....++..+.+.+.+ +.+
T Consensus 287 G~--n~rm-----sel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 359 (438)
T PRK15407 287 GY--NLKI-----TDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFGFPITVKEDAGFT 359 (438)
T ss_pred cc--ccCc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEEEEEEECCcCCCC
Confidence 11 1112 235556666555557888889999999999999876 322222 12222333345555532 345
Q ss_pred HHHHHHHHHhhCCeEEccCC
Q 017726 319 SSEIVRRAWQRYNLSLGLGL 338 (367)
Q Consensus 319 ~~~l~~~L~~~~gv~v~~g~ 338 (367)
.+++.+.|.++ ||..+..+
T Consensus 360 Rd~l~~~L~~~-GI~~~~~~ 378 (438)
T PRK15407 360 RVELVKYLEEN-KIGTRLLF 378 (438)
T ss_pred HHHHHHHHHHC-CCCccccC
Confidence 78999999765 99776443
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.9e-20 Score=156.79 Aligned_cols=314 Identities=14% Similarity=0.127 Sum_probs=214.0
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCCCC----CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CC
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRS----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LS 82 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~ 82 (367)
|-|+..-+.+.+-.++.+.+.+++....+ .+-..-..++++.+|++.+-+. .++| +|.--|+...+..+ .-
T Consensus 179 NDYLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK~a--ALlF-sSCfVANDstLftLak~l 255 (570)
T KOG1360|consen 179 NDYLGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQKEA--ALLF-SSCFVANDSTLFTLAKKL 255 (570)
T ss_pred CccccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcCcc--eeee-eeeeeccchHHHHHHHHC
Confidence 44555545555555555555554432111 1223446689999999998776 3555 55556665544433 34
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHH
Q 017726 83 PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKL 162 (367)
Q Consensus 83 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~ 162 (367)
||=.++ ++.+.+.. +..-.+..+++=.....+ |+++|++++...+...||+|.+.+.++.+|.+.|+++|+++
T Consensus 256 pgcei~-SD~gNHAS-MI~GIrns~v~K~IFrHN-----D~~hL~~lL~~~~~svPKivAFEtVhSM~GavcpleelcDv 328 (570)
T KOG1360|consen 256 PGCEIF-SDEGNHAS-MIQGIRNSRVPKHIFRHN-----DLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCDV 328 (570)
T ss_pred CCcEEe-ccccchHH-HHHHhhhcCCcceeeccC-----CHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHHH
Confidence 664444 44433332 222234444433333333 89999999988654679999999999999999999999999
Q ss_pred HHhcCCCcEEEEeeeeccCceee--------ccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeech
Q 017726 163 LDEYRHPALFLVDGVSSICAIDF--------RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDW 234 (367)
Q Consensus 163 ~~~~~~~~~vi~D~~~~~~~~~~--------~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 234 (367)
+++ +|++.++|+.|+.|..-. +......||+.++..|.| |.-| ||+..+..+++-++.... ++.+
T Consensus 329 ah~--yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKaf-GcVG-GYIAat~~LvDmiRSyAa-GFIF-- 401 (570)
T KOG1360|consen 329 AHK--YGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAF-GCVG-GYIAATRKLVDMIRSYAA-GFIF-- 401 (570)
T ss_pred HHH--hCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhc-cccc-ceehhhhhHHHHHHHhcC-ceEE--
Confidence 999 999999999988754321 112235799999999999 4665 999999999988876432 2222
Q ss_pred HHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcC
Q 017726 235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 314 (367)
..+.+...+++...+++.+..+.-...++..+++..++++.|.+.|+++++. -..++.+++.
T Consensus 402 -------------TTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~GiPVi~~-----pSHIiPv~vg 463 (570)
T KOG1360|consen 402 -------------TTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMELGIPVIPN-----PSHIIPVRVG 463 (570)
T ss_pred -------------ecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCcccCC-----Ccceeeeecc
Confidence 2345555666777788877644234567778999999999999999999985 2347778886
Q ss_pred CCCCHHHHHHHHHhhCCeEEccCCCCC---CCcEEEEeecCCCCHH
Q 017726 315 SHINSSEIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNEV 357 (367)
Q Consensus 315 ~~~~~~~l~~~L~~~~gv~v~~g~~~~---~~~~iRi~~~~~~~~~ 357 (367)
+..-+.++++.|..+++|+|...-.|. ....+||.+....++.
T Consensus 464 da~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~ 509 (570)
T KOG1360|consen 464 DAALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQ 509 (570)
T ss_pred CHHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHH
Confidence 555577899999999999998653332 2345999987766654
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-21 Score=155.55 Aligned_cols=164 Identities=29% Similarity=0.301 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCH
Q 017726 44 TKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKL 123 (367)
Q Consensus 44 ~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~ 123 (367)
..++++.++++++.+. +.+++++|+++|+.+++.++..++++|++.++.|++..+ ..++..|.+++.++.+.++..+.
T Consensus 2 ~~~~~~~l~~~~~~~~-~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~ 79 (170)
T cd01494 2 LEELEEKLARLLQPGN-DKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYW-VAAELAGAKPVPVPVDDAGYGGL 79 (170)
T ss_pred HHHHHHHHHHHcCCCC-CcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehh-hHHHhcCCEEEEeccCCCCccch
Confidence 4689999999997444 348888999999999999988889999999999888764 56788899999998876543333
Q ss_pred --HHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceee---ccccccceEEEec
Q 017726 124 --DVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF---RMDEWGIDVALTG 198 (367)
Q Consensus 124 --e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~---~~~~~~~d~~~~s 198 (367)
+.+++... + ++++++++++++|++|...|+++|.++|++ +|+++++|+++..+.... +....++|+++.|
T Consensus 80 ~~~~~~~~~~--~-~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~--~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~s 154 (170)
T cd01494 80 DVAILEELKA--K-PNVALIVITPNTTSGGVLVPLKEIRKIAKE--YGILLLVDAASAGGASPAPGVLIPEGGADVVTFS 154 (170)
T ss_pred hhhhhhhccc--c-CceEEEEEecCcCCCCeEcCHHHHHHHHHH--cCCEEEEecccccccccccccccccccCCEEEEE
Confidence 24443332 1 578999999999999999999999999999 999999999999877664 4555679999999
Q ss_pred CCCcccCCCcceeeeeC
Q 017726 199 SQKALSLPTGMGIVCAS 215 (367)
Q Consensus 199 ~~K~~~g~~g~g~~~~~ 215 (367)
+||++++ +|.|+++++
T Consensus 155 ~~K~~~~-~~~G~l~~~ 170 (170)
T cd01494 155 LHKNLGG-EGGGVVIVK 170 (170)
T ss_pred cccccCC-CceEEEEeC
Confidence 9999976 778999875
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-19 Score=164.36 Aligned_cols=303 Identities=12% Similarity=0.112 Sum_probs=182.3
Q ss_pred hHHHHHHHccCCCC-----CCCC---cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHc----cCCCCC-eE
Q 017726 21 PDQVIRAMNRNNED-----YRSP---AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN----TLSPGD-RI 87 (367)
Q Consensus 21 ~~~v~~a~~~~~~~-----~~~~---~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~----~~~~gd-~v 87 (367)
++++.+++.++... +.+. ...+...++++.++++++. + .++.++|++|+..++.. ...+|+ .+
T Consensus 62 ~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~---~-~~~~~sG~~a~~~ai~~~~~~~~~~~~~~v 137 (402)
T PRK07505 62 HPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGA---S-VLTFTSCSAAHLGILPLLASGHLTGGVPPH 137 (402)
T ss_pred CHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhCC---C-EEEECChHHHHHHHHHHHHhcccCCCCCCE
Confidence 56666766664321 1111 2356788999999999986 3 35456778888876643 222233 36
Q ss_pred EEEeCCcchHHH-HHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhc
Q 017726 88 ISFLIGQFSLLW-IDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY 166 (367)
Q Consensus 88 l~~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~ 166 (367)
++.+..+++... .......+.+++.++.+ |++++++++++ +++++++++|+||+|.+.|+++|.++|++
T Consensus 138 i~~~~~~H~s~~~~~~~~~~~~~v~~~~~~-----d~~~l~~~~~~----~~~~~vl~~p~~~~G~~~~~~~i~~l~~~- 207 (402)
T PRK07505 138 MVFDKNAHASLNILKGICADETEVETIDHN-----DLDALEDICKT----NKTVAYVADGVYSMGGIAPVKELLRLQEK- 207 (402)
T ss_pred EEEchhhhHhHHhhhhhhhcCCeEEEeCCC-----CHHHHHHHHhc----CCCEEEEEecccccCCcCCHHHHHHHHHH-
Confidence 566554444321 11122235667777653 89999999873 45899999999999999999999999999
Q ss_pred CCCcEEEEeeeeccCce-----ee--c-cc--cccceEEEecCCCcccCCCcceeeee-CHHHHHHhccCCCCceeechH
Q 017726 167 RHPALFLVDGVSSICAI-----DF--R-MD--EWGIDVALTGSQKALSLPTGMGIVCA-SPKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~-----~~--~-~~--~~~~d~~~~s~~K~~~g~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~ 235 (367)
+|+++|+|++|+.+.+ .+ + .. .....+++.|++|.++ ..| |+++. ++++++.+.......
T Consensus 208 -~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~-~~G-g~~~~~~~~~~~~~~~~~~~~------ 278 (402)
T PRK07505 208 -YGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFG-ASG-GVIMLGDAEQIELILRYAGPL------ 278 (402)
T ss_pred -cCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhh-ccC-eEEEeCCHHHHHHHHHhCCCc------
Confidence 9999999999854211 11 1 11 1234577889999986 444 77664 777777765421110
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS 315 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 315 (367)
+ +..+++...+++..++++.+.++.+.+..++.+++.+.+.+.+... +.. ....+..+.+++
T Consensus 279 ---------t-~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~g-----~~~~i~~~~~~~ 340 (402)
T PRK07505 279 ---------A-FSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIPTE---QSG-----SFLPIRLIYIGD 340 (402)
T ss_pred ---------e-eCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhc---CCC-----CCCCEEEEEeCC
Confidence 0 1123556666777777776655555555555555544433322111 111 122223333322
Q ss_pred CCCHHHHHHHHHhhCCeEEccCCCCC---CCcEEEEeecCCCCHH--HHHHhhhh
Q 017726 316 HINSSEIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNEV--MFNFQLLF 365 (367)
Q Consensus 316 ~~~~~~l~~~L~~~~gv~v~~g~~~~---~~~~iRi~~~~~~~~~--~~~~~~l~ 365 (367)
..+..++.+.|.++ ||.+++...+. ...++|+++....+++ +....+|+
T Consensus 341 ~~~~~~~~~~l~~~-Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~ 394 (402)
T PRK07505 341 EDTAIKAAKQLLDR-GFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLK 394 (402)
T ss_pred HHHHHHHHHHHHHC-CCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHH
Confidence 22356899999755 99998763221 2257999987655544 44444443
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-19 Score=165.67 Aligned_cols=275 Identities=16% Similarity=0.128 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc----CCCCC----eEEEEeCCcchHHHHHHHHHhCCceEE-
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT----LSPGD----RIISFLIGQFSLLWIDQQQRLNFNVDV- 112 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~----~~~gd----~vl~~~~~~~~~~~~~~~~~~g~~~~~- 112 (367)
+...++.++++++.+. +.+++++||++|+..+++.. ..+|| +|++.++.|++..... ....+.....
T Consensus 73 ~~~~~la~~l~~~~~~---~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~-~~~~~~~~~~~ 148 (389)
T PRK01278 73 PEQERLAERLVENSFA---DKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLAT-IAAGGQEKYLE 148 (389)
T ss_pred hHHHHHHHHHHhhCCC---CEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHH-HhccCChhhcc
Confidence 4556788888887642 35999999999999988764 34565 8999999888864211 1111221111
Q ss_pred --EeCCCCCC----CCHHHHHHHHhccCCCCccEEEEEecCCCccccc----cHHHHHHHHHhcCCCcEEEEeeeeccCc
Q 017726 113 --VESDWGEG----AKLDVLASKLAADTAHTIKAICIVHNETATGVTN----NLSKVRKLLDEYRHPALFLVDGVSSICA 182 (367)
Q Consensus 113 --v~~~~~~~----~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~----~~~~i~~~~~~~~~~~~vi~D~~~~~~~ 182 (367)
.+...+.. .|+++++++++ +++++|+++.++|++|... .+++|.++|++ +|+++|+|++|....
T Consensus 149 ~~~~~~~~~~~~~~~d~~~l~~~l~----~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~--~g~~lI~DEv~~g~g 222 (389)
T PRK01278 149 GFGPLVPGFDQVPFGDIEALKAAIT----PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDE--NGLLLIFDEVQCGMG 222 (389)
T ss_pred cCCCCCCCceEeCCCCHHHHHHhhC----CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHH--cCCEEEEeccccCCC
Confidence 01111111 48999999987 4679999999999999443 48889999999 999999999987322
Q ss_pred e-----eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHH
Q 017726 183 I-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLY 257 (367)
Q Consensus 183 ~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (367)
. .........|++ +.+|.+++...+|++++++++++.+..... + ..++.+...++
T Consensus 223 ~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~----------------~--~t~~~~~~~~a 282 (389)
T PRK01278 223 RTGKLFAHEWAGVTPDIM--AVAKGIGGGFPLGACLATEEAAKGMTPGTH----------------G--STYGGNPLAMA 282 (389)
T ss_pred cCCcceeecccCCCCCEE--EEehhccCCcceEEEEEcHHHHhccCCCCC----------------C--CCCCccHHHHH
Confidence 1 111112235654 568999654447999999988776643211 1 12345666666
Q ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCc-cccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEE
Q 017726 258 GLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLK-NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSL 334 (367)
Q Consensus 258 al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v 334 (367)
+..++++.+.+.+ ..++..++.+++++.|+++ ... +...-. ..+.++++.++ .+..++++.|.++ ||.+
T Consensus 283 aa~a~l~~l~~~~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v~--g~G~~~~i~~~--~~~~~~~~~l~~~-GV~~ 354 (389)
T PRK01278 283 VGNAVLDVILAPG---FLDNVQRMGLYLKQKLEGLVDRFPDVIEEVR--GKGLLLGLKCV--VPNRDLVQALRDE-GLLT 354 (389)
T ss_pred HHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHhhCCCceeeEe--cccEEEEEEEe--cCHHHHHHHHHHC-CeEE
Confidence 7777787775543 3445666777777777664 122 222111 13345555553 2577899999876 9998
Q ss_pred ccCCCCCCCcEEEEeecCCCCHHH
Q 017726 335 GLGLNKVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 335 ~~g~~~~~~~~iRi~~~~~~~~~~ 358 (367)
.++. .+++|+++....++++
T Consensus 355 ~p~~----~~~lR~~p~~~~~~~~ 374 (389)
T PRK01278 355 VGAG----DNVVRLLPPLIITEEE 374 (389)
T ss_pred eecC----CCEEEEeCCcccCHHH
Confidence 8752 4689999755455443
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-19 Score=162.89 Aligned_cols=280 Identities=15% Similarity=0.134 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.+...++++.++++.|.+. .+.++||+.|+.+++.+++.+||+|+++...|.... +...+...|+++..++.++.
T Consensus 63 ~P~~~~lE~~la~leg~~~---av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~~ 139 (384)
T PRK06434 63 NPTVQAFEEKYAVLENAEH---ALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRL 139 (384)
T ss_pred ChhHHHHHHHHHHHhCCCc---EEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECCCCh
Confidence 4667899999999999764 567788999999999999999999999766443333 33567778999999987632
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
..++ ++. +++++|++.++.||++.+.|+++|.++|++ ++ +++|++++.+.. ......++|++++|
T Consensus 140 ~~~~-------l~~---~~tklv~~e~~snpt~~v~Di~~I~~la~~--~~--lvVD~t~~s~~~-~~pl~~gaDivv~S 204 (384)
T PRK06434 140 NSLD-------FDP---SNYDLIYAESITNPTLKVPDIKNVSSFCHE--ND--VIVDATFASPYN-QNPLDLGADVVIHS 204 (384)
T ss_pred hhee-------ecC---CCeeEEEEEcCCCCCceeecHHHHHHHHHH--cC--eEEECCCCCccc-CCchhcCCCEEEee
Confidence 2222 221 367999999999999999999999999999 87 466999764332 22224579999999
Q ss_pred CCCcccCCCc--ceeeee-CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHH
Q 017726 199 SQKALSLPTG--MGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~ 275 (367)
.+|+++|+.+ .|.++. ++++.+++.... ...|. ..+. ..+++...+-.-++.+.
T Consensus 205 ~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~--------------~~~G~----~~~~-----~~A~l~~~gL~tL~~R~ 261 (384)
T PRK06434 205 ATKYISGHSDVVMGVAGTNNKSIFNNLVERR--------------KTLGS----NPDP-----IQAYLALRGLKTLGLRM 261 (384)
T ss_pred cccccCCCCCceEEEEecCcHHHHHHHHHHH--------------HhcCC----CCCH-----HHHHHHHhCCCcHHHHH
Confidence 9999987664 366656 444444443210 01121 1222 23344333333478889
Q ss_pred HHHHHHHHHHHHHHHHc-CCc-cccCCC------ccCCCceEEEEcCCCC-CHHHHHHHHHhhCCeEEccCC-C-----C
Q 017726 276 ERHRRLGKATRLAVEAW-GLK-NCTQKE------EWFSDTVTAVIVPSHI-NSSEIVRRAWQRYNLSLGLGL-N-----K 340 (367)
Q Consensus 276 ~~~~~~~~~l~~~L~~~-g~~-~~~~~~------~~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~v~~g~-~-----~ 340 (367)
++..+++..+.+.|++. .+. +.-|.- ....+.++.|.+. +. ....|.+.|. -..+.+.-|- . +
T Consensus 262 ~r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~-~~~~~~~f~~~l~-l~~~~~slG~~~sl~~~p 339 (384)
T PRK06434 262 EKHNKNGMELARFLRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELR-SMEDVHKFIRNLE-IPMVAASLGGVESLITLP 339 (384)
T ss_pred HHHHHHHHHHHHHHHcCCCccEEECCChHHHHHhcCCCCceEEEEEC-CHHHHHHHHHhCC-cceEccCCCCCCeeeECC
Confidence 99999999999999987 442 222210 0124568889983 31 1223333331 1122222221 0 0
Q ss_pred -----------------CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 341 -----------------VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 341 -----------------~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
..++.||+| .|-++.+|+..++.
T Consensus 340 ~~~~h~~~~~e~~~~~gi~~~liRls-vGlEd~~dLi~dl~ 379 (384)
T PRK06434 340 VETSHSSLSPEERERLGISDNLVRFS-IGIEDIDDLIKDIE 379 (384)
T ss_pred CccccccCCHHHHHhcCCCcCeEEEE-eCcCCHHHHHHHHH
Confidence 113469998 57778888776654
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-19 Score=158.72 Aligned_cols=286 Identities=15% Similarity=0.118 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.+....+++.++.+-|... .+.++||..|+..++.+++++||+|++++.-|.+.+ +....++.|+++..++..
T Consensus 62 nPT~~~lE~~~a~LEg~~~---~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~-- 136 (396)
T COG0626 62 NPTRDALEEALAELEGGED---AFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPG-- 136 (396)
T ss_pred CccHHHHHHHHHHhhCCCc---EEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCC--
Confidence 3556788888898887555 466688999999999999999999999999777764 556777899999888654
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
+.+++++++.+ ++||+|++.+|.||+-.+.|+++|.++||+ +|+++++|.+.+.+.. ...-..|+||++.|
T Consensus 137 ---~~~~~~~~~~~---~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~--~g~~vvVDNTfatP~~-q~PL~~GaDIVvhS 207 (396)
T COG0626 137 ---DDEALEAAIKE---PNTKLVFLETPSNPLLEVPDIPAIARLAKA--YGALVVVDNTFATPVL-QRPLELGADIVVHS 207 (396)
T ss_pred ---ChHHHHHHhcc---cCceEEEEeCCCCcccccccHHHHHHHHHh--cCCEEEEECCcccccc-cChhhcCCCEEEEe
Confidence 45677777763 367999999999999999999999999999 9999999999876443 23334589999999
Q ss_pred CCCcccCCCcc--eeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 199 SQKALSLPTGM--GIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 199 ~~K~~~g~~g~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
.+|+++|...+ |++..+++.+....... .+-..|. .++....+.+...++- +.-+.+
T Consensus 208 aTKyl~GHsDvl~G~v~~~~~~~~~~~~~~------------~~~~~G~----~l~p~dA~l~lRGlkT-----L~~Rm~ 266 (396)
T COG0626 208 ATKYLGGHSDVLGGVVLTPNEELYELLFFA------------QRANTGA----VLSPFDAWLLLRGLRT-----LALRME 266 (396)
T ss_pred ccccccCCcceeeeEEecChHHHHHHHHHH------------HHhhcCC----CCCHHHHHHHHhccch-----HHHHHH
Confidence 99999887553 76665665544332100 0101122 2333222222222222 566788
Q ss_pred HHHHHHHHHHHHHHHc-CCc-cccCC----Cc-------c-CCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccC-CC--
Q 017726 277 RHRRLGKATRLAVEAW-GLK-NCTQK----EE-------W-FSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLG-LN-- 339 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~~-~~~~~----~~-------~-~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g-~~-- 339 (367)
+..+++..+.+.|++. .++ ++-|. +. . ..+.+++|.+..+.+..+|.+.|+ -..+...-| ..
T Consensus 267 ~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~~~~~~f~~~L~-l~~~a~SlGgveSL 345 (396)
T COG0626 267 RHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNEEAAKKFLDSLK-LFKLAESLGGVESL 345 (396)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCChHHHHHHHHhCC-ccEEeccCCCcccc
Confidence 8999999999999996 432 33331 10 1 156689999943323445555552 333333322 11
Q ss_pred ---C-----------------CCCcEEEEeecCCCCHHHHHHhh
Q 017726 340 ---K-----------------VAGKVFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 340 ---~-----------------~~~~~iRi~~~~~~~~~~~~~~~ 363 (367)
+ ..++.+|+| .|-++.+|+...+
T Consensus 346 i~~pa~~th~~~~~~~r~~~Gi~~~LvRlS-VGlEd~eDLi~Dl 388 (396)
T COG0626 346 ISHPATMTHASIPLEERAKAGITDGLVRLS-VGLEDVEDLIADL 388 (396)
T ss_pred cccccccCcccCCHhHHHhcCCCCCeEEEE-ecCCCHHHHHHHH
Confidence 1 124569998 5777777766554
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-19 Score=164.78 Aligned_cols=275 Identities=16% Similarity=0.147 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCC-------CeEEEEeCCcchHHHHHHHHHhCCceE--
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPG-------DRIISFLIGQFSLLWIDQQQRLNFNVD-- 111 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~g-------d~vl~~~~~~~~~~~~~~~~~~g~~~~-- 111 (367)
.+...++.+.++++.+. +.+++++||++|+..++......+ ++|++..+.|++...... ...+....
T Consensus 80 ~~~~~~la~~l~~~~~~---~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~-~~~~~~~~~~ 155 (396)
T PRK02627 80 IEPQEELAEKLVELSGM---DKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATL-SATGQPKYQE 155 (396)
T ss_pred CHHHHHHHHHHHhhcCC---CEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHH-HhcCCccccc
Confidence 45667788888888664 359999999999999988543222 678888888876532111 11121111
Q ss_pred -EEeCCCCC----CCCHHHHHHHHhccCCCCccEEEEEecCCCccc-ccc---HHHHHHHHHhcCCCcEEEEeeeeccCc
Q 017726 112 -VVESDWGE----GAKLDVLASKLAADTAHTIKAICIVHNETATGV-TNN---LSKVRKLLDEYRHPALFLVDGVSSICA 182 (367)
Q Consensus 112 -~v~~~~~~----~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~-~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~ 182 (367)
..+...+. ..|++++++++. +++++|++++++|++|. ++| +++|.++|++ +|+++|+|++++...
T Consensus 156 ~~~~~~~~~~~~~~~d~~~l~~~i~----~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~--~~~~lI~DE~~~g~g 229 (396)
T PRK02627 156 GFEPLVEGFIYVPFNDIEALKAAIT----DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDE--NGILLILDEVQTGMG 229 (396)
T ss_pred cCCCCCCCceEeCCCCHHHHHHhcC----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHH--cCCEEEEechhcCCC
Confidence 11111111 128899999986 47799999999999994 444 7889999999 999999999987321
Q ss_pred e-----eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHH
Q 017726 183 I-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLY 257 (367)
Q Consensus 183 ~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (367)
. .+.......|++ +++|.++++..+|++++++++++.+..... . ..+..+...+.
T Consensus 230 ~~g~~~~~~~~~~~pdi~--t~sK~~~~G~rig~~~~~~~~~~~~~~~~~----------------~--~t~~~~~~~~~ 289 (396)
T PRK02627 230 RTGKLFAYQHYGIEPDIM--TLAKGLGGGVPIGAVLAKEKVADVFTPGDH----------------G--STFGGNPLACA 289 (396)
T ss_pred ccCceeeehhcCCCCCEE--EEcchhhCCcccEEEEEcHHHHhccCCCCC----------------C--CCCCCCHHHHH
Confidence 1 111222235655 467998754557999999998776653211 1 13345665666
Q ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEc
Q 017726 258 GLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLG 335 (367)
Q Consensus 258 al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~ 335 (367)
+..++++.+.+.+ ..++.+++.+++++.|++. .+.....-. ..+.++++.++ .+..++++.|.++ ||.+.
T Consensus 290 aa~~~l~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~g~~~~i~~~--~~~~~~~~~l~~~-Gv~v~ 361 (396)
T PRK02627 290 AALAVIEIIEEEG---LLENAAEVGEYLRAKLRELLEKYPGIKEVR--GLGLMIGIELD--RPAAEIVKKALEK-GLLIN 361 (396)
T ss_pred HHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHhCCCeeeec--cCcEEEEEEec--CcHHHHHHHHHHC-CeEEe
Confidence 6666777665543 3456666677777777664 222221111 13446777762 3578899999876 99998
Q ss_pred cCCCCCCCcEEEEeecCCCCHH
Q 017726 336 LGLNKVAGKVFRIGHLGHLNEV 357 (367)
Q Consensus 336 ~g~~~~~~~~iRi~~~~~~~~~ 357 (367)
++. ..++|+++....+++
T Consensus 362 ~~~----~~~lRi~~~~~~~~~ 379 (396)
T PRK02627 362 VTG----DNVLRLLPPLIISKE 379 (396)
T ss_pred ecC----CCEEEEECCcccCHH
Confidence 752 367999865444443
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.2e-19 Score=162.06 Aligned_cols=263 Identities=12% Similarity=0.130 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEecCChh-HHHHHHHHccC--C-CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC
Q 017726 40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGT-GAWESALTNTL--S-PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES 115 (367)
Q Consensus 40 ~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt-~al~~~~~~~~--~-~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 115 (367)
.....+++.+.+++++|.+.....++++|+| .++.+++.++- . +|+.|+++...|.+. .+.+...|++++.++.
T Consensus 103 ~~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~--~kAi~~~G~~pv~Vd~ 180 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSC--IKAISTAGFEPRVIET 180 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHH--HHHHHHcCCeEEEeee
Confidence 5677889999999999998444478889999 58877776643 2 589999998876654 3678889999999995
Q ss_pred ---CCCCCCCHHHHHHHHhccCCCCccEEEEEecC-CCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceee-----c
Q 017726 116 ---DWGEGAKLDVLASKLAADTAHTIKAICIVHNE-TATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF-----R 186 (367)
Q Consensus 116 ---~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~-n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~-----~ 186 (367)
+.++.+|+++++++|++.+ ++..++++.+++ +..|...|+++|.++|++ +|+++|+|++|+.+.... .
T Consensus 181 ~~d~~~~~iD~e~Le~aIt~~~-~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k--~gI~lIvDaAyg~~~~~~~~~~~~ 257 (444)
T TIGR03531 181 VLDGDELTTDVEDIERAIEEIG-PDNILCVLSTTSCFAPRSPDDIEEIAKICAN--YDIPHIVNNAYGLQSNKYMELINK 257 (444)
T ss_pred eecCcCCCcCHHHHHHHHHhcc-CCCEEEEEEcCCcCCCcchhCHHHHHHHHHH--cCCEEEEECcCcCcChhhhhhhhc
Confidence 3457899999999998543 245666666654 444578899999999999 999999999999755321 1
Q ss_pred cccc-cceEEEecCCCcccCCCcceeeee-CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHH
Q 017726 187 MDEW-GIDVALTGSQKALSLPTGMGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALD 264 (367)
Q Consensus 187 ~~~~-~~d~~~~s~~K~~~g~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~ 264 (367)
.... .+|++++|+||++..|.+.|+++. ++++.+.+.... .+. ..+. ....++.++.
T Consensus 258 g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~~y----------------~g~----~~~s-~~~~~~~~ll 316 (444)
T TIGR03531 258 AIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEISKSY----------------PGR----ASAS-PSLDVLITLL 316 (444)
T ss_pred cccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHHHhc----------------cCC----CCCh-HHHHHHHHHH
Confidence 1112 369999999999986666677766 667776665321 011 0111 1234455555
Q ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCCCceEEEEcC--CCCCHHHHHHHHHhhCCe
Q 017726 265 LIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFSDTVTAVIVP--SHINSSEIVRRAWQRYNL 332 (367)
Q Consensus 265 ~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~L~~~~gv 332 (367)
.+...|+++++++..++++++.+.|+++ |..++... ....-+.+.+. .+.+...+-..|..+ +|
T Consensus 317 ~~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~---~n~is~~~~~~~~~~~~~~~~g~~l~~~-~v 386 (444)
T TIGR03531 317 SLGSKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTP---ENPISSAMTLSTLKGKDPTMLGSMLYSR-RV 386 (444)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCC---CCceeEEEecccccccCHHHHHHHHHhC-CC
Confidence 6666779999999999999999999885 55555431 11111223331 234566777777544 44
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-19 Score=147.36 Aligned_cols=311 Identities=16% Similarity=0.130 Sum_probs=220.5
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCCCCC----CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCC
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNEDYRS----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSP 83 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~ 83 (367)
+|+|+-....+.+..+..+++.++.....+ -+...+.+.++..||++.+.++ .++.+++-.|+..++.+++.|
T Consensus 74 aNnYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh~rED---~ilypscfdANag~feail~p 150 (417)
T KOG1359|consen 74 ANNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFHGRED---TILYPSCFDANAGAFEAILTP 150 (417)
T ss_pred ccccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHHhCCCc---eEEeccccccchHHHHHhcCh
Confidence 577887788888888889999998765433 3457889999999999988665 355588889999999899999
Q ss_pred CCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHH
Q 017726 84 GDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKL 162 (367)
Q Consensus 84 gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~ 162 (367)
.|.|+.....|-|.. =..++++ ...+|+-.++..+.+....|-|+|+-....+..|.+.|+++|.++
T Consensus 151 edAvfSDeLNhASIIdGirLckr------------y~h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaPl~ei~~L 218 (417)
T KOG1359|consen 151 EDAVFSDELNHASIIDGIRLCKR------------YRHVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAPLEEISQL 218 (417)
T ss_pred hhhhhccccccchhhhhhHHHhh------------hccchhHHHHHHHHHhhhheEEEEEecceeccCCCcccHHHHHHH
Confidence 998887766665543 1133332 223455555555543221466788888888999999999999999
Q ss_pred HHhcCCCcEEEEeeeeccCcee---------eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeec
Q 017726 163 LDEYRHPALFLVDGVSSICAID---------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFD 233 (367)
Q Consensus 163 ~~~~~~~~~vi~D~~~~~~~~~---------~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 233 (367)
+++ ||.++++|++|+-+..- +.+ ...+|++.++.+|.++|..| ||..++++++.-++.. .+++.+
T Consensus 219 a~k--YgaLlfiDecHaTgf~G~tGrGt~E~~~v-m~~vdiinsTLgKAlGga~G-Gyttgp~~li~llrqr-~RpylF- 292 (417)
T KOG1359|consen 219 AKK--YGALLFIDECHATGFFGETGRGTAEEFGV-MGDVDIINSTLGKALGGASG-GYTTGPKPLISLLRQR-SRPYLF- 292 (417)
T ss_pred HHh--cCcEEEEeecccceeecCCCCChHHHhCC-CCcceehhhhhhhhhcCCCC-CCccCChhHHHHHHhc-CCceee-
Confidence 999 99999999999754321 111 13589999999999987776 9999999998877653 223332
Q ss_pred hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEc
Q 017726 234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIV 313 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 313 (367)
.++.+...+-....+++.+... ....++.+.+.+++++..+..|+.+.+. +.++..+.+
T Consensus 293 --------------SnslppavV~~a~ka~dllm~s--~~~i~~~~a~~qrfr~~me~aGftIsg~-----~hPI~pv~l 351 (417)
T KOG1359|consen 293 --------------SNSLPPAVVGMAAKAYDLLMVS--SKEIQSRQANTQRFREFMEAAGFTISGA-----SHPICPVML 351 (417)
T ss_pred --------------cCCCChhhhhhhHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHhcCceecCC-----CCCccceec
Confidence 2334433333344456665554 4567788899999999999999999885 344566666
Q ss_pred CCCCCHHHHHHHHHhhCCeEEccCCCCC--CC-cEEEEeecCCCCHHHHHH
Q 017726 314 PSHINSSEIVRRAWQRYNLSLGLGLNKV--AG-KVFRIGHLGHLNEVMFNF 361 (367)
Q Consensus 314 ~~~~~~~~l~~~L~~~~gv~v~~g~~~~--~~-~~iRi~~~~~~~~~~~~~ 361 (367)
.+..-+..+.+.|++. ||+|.....|. ++ -.+|+-+....+++|+++
T Consensus 352 Gda~lA~~~ad~lLk~-Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~ 401 (417)
T KOG1359|consen 352 GDARLASKMADELLKR-GIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDR 401 (417)
T ss_pred ccHHHHHHHHHHHHhc-CceEEeecCCcCCCCceEEEEEEehhcCHHHHHH
Confidence 5544566788888866 99998554332 23 348887777776666554
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-19 Score=151.11 Aligned_cols=263 Identities=17% Similarity=0.148 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.+....++++++.+-|--. .+.+.||..|+..++.++..+||.|+....-|.+.. +....+++|+++++++.+
T Consensus 61 NPT~~vlE~RiAaLEGG~a---a~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~-- 135 (426)
T COG2873 61 NPTTDVLEERIAALEGGVA---ALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPD-- 135 (426)
T ss_pred CchHHHHHHHHHHhhcchh---hhhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCC--
Confidence 3556788999998877544 367789999999999999999999998877666553 556678999999999865
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+|.++++|++ +||+|++.+..||.+.+.|+++|.++||+ +|++++||.+-+.+. -+...+.|+|+++.|
T Consensus 136 ---d~~~~~~aI~~----nTkavf~EtigNP~~~v~Die~ia~iAh~--~gvpliVDNT~atpy-l~rP~~hGADIVvHS 205 (426)
T COG2873 136 ---DPENFEAAIDE----NTKAVFAETIGNPGLDVLDIEAIAEIAHR--HGVPLIVDNTFATPY-LCRPIEHGADIVVHS 205 (426)
T ss_pred ---CHHHHHHHhCc----ccceEEEEeccCCCccccCHHHHHHHHHH--cCCcEEEecCCCcce-ecchhhcCCCEEEEe
Confidence 79999999994 67999999999999999999999999999 999999998876542 234445689999999
Q ss_pred CCCcccCC-CcceeeeeCHHHHHHhccCCCCce------ee--chHH------HH-----HHhh-cCCccCCCCcHHHHH
Q 017726 199 SQKALSLP-TGMGIVCASPKALEASKTAKSVRV------FF--DWKD------YI-----KFYN-LGTFWPYTPSIQLLY 257 (367)
Q Consensus 199 ~~K~~~g~-~g~g~~~~~~~~~~~~~~~~~~~~------~~--~~~~------~~-----~~~~-~~~~~~~~~~~~~~~ 257 (367)
.+||++|. ..+|.+++...--+.....+.+.+ |. .+.+ +. +.++ -|. +.+....+
T Consensus 206 ~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa----~lsPfnAf 281 (426)
T COG2873 206 ATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGA----TLSPFNAF 281 (426)
T ss_pred ecccccCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhccc----ccCcHHHH
Confidence 99999753 224544433222111111121111 10 1111 11 1111 121 23332222
Q ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCcccc-C----CC---------ccCCCceEEEEcCCCCC-HHH
Q 017726 258 GLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCT-Q----KE---------EWFSDTVTAVIVPSHIN-SSE 321 (367)
Q Consensus 258 al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~----~~---------~~~~~~~~~~~~~~~~~-~~~ 321 (367)
.+...++. +.-++++..+|+..+.+.|++. .+.++. | ++ ....+.++.|.+.++.+ .+.
T Consensus 282 l~lqGlET-----L~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~~~~h~la~kyl~~g~g~vltF~~kgg~ea~~~ 356 (426)
T COG2873 282 LLLQGLET-----LSLRMERHCENALKVAEFLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGVKGGYEAGKK 356 (426)
T ss_pred HHHhchhh-----hHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCCCcchhHHHhhccCCCceEEEEEecChHHHHHH
Confidence 22222222 4456888999999999999997 444433 1 11 12345588888854432 345
Q ss_pred HHHHHH
Q 017726 322 IVRRAW 327 (367)
Q Consensus 322 l~~~L~ 327 (367)
+++.|+
T Consensus 357 fi~~l~ 362 (426)
T COG2873 357 FIDALK 362 (426)
T ss_pred HHHHHH
Confidence 655553
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-20 Score=165.65 Aligned_cols=269 Identities=15% Similarity=0.179 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC--
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG-- 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-- 118 (367)
.....+.++..|+.+|++. ...+++|+|.++..++.+++.+||+|++..+.|-|.. ..+...|+++++++....
T Consensus 65 ~G~I~eAe~~aA~~fGAd~--t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~--~alil~ga~Pvyi~p~~~~~ 140 (417)
T PF01276_consen 65 EGIIKEAEELAARAFGADK--TFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVY--NALILSGAIPVYIPPEDNEY 140 (417)
T ss_dssp BTHHHHHHHHHHHHHTESE--EEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHH--HHHHHHTEEEEEEEEEE-TT
T ss_pred ccHHHHHHHHHHHhcCCCe--EEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHH--HHHHHcCCeEEEecCCcccc
Confidence 3567899999999999987 4688899999999999999999999999999887754 457778999988876421
Q ss_pred ---CCCCH-----HHHHHHHhccCCC-CccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccC---c-eee
Q 017726 119 ---EGAKL-----DVLASKLAADTAH-TIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSIC---A-IDF 185 (367)
Q Consensus 119 ---~~~d~-----e~l~~~i~~~~~~-~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~---~-~~~ 185 (367)
+.+++ +.+++++++++.. .++++++++| |..|.+.|+++|.++|++ ++++|++|+||+.- . ++-
T Consensus 141 gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~P-TY~Gv~~di~~I~~~~h~--~~~~llvDEAhGah~~F~~lp~ 217 (417)
T PF01276_consen 141 GIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSP-TYYGVCYDIKEIAEICHK--HGIPLLVDEAHGAHFGFHPLPR 217 (417)
T ss_dssp S-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS--TTSEEE-HHHHHHHHCC--TECEEEEE-TT-TTGGCSGGGT
T ss_pred CCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCC-CCCeEEECHHHHHHHhcc--cCCEEEEEccccccccCCCCcc
Confidence 23466 9999999987521 1345888876 689999999999999999 99999999998742 1 112
Q ss_pred ccccccce-------EEEecCCCcccCCCcceeeeeCHHH---HHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHH
Q 017726 186 RMDEWGID-------VALTGSQKALSLPTGMGIVCASPKA---LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQL 255 (367)
Q Consensus 186 ~~~~~~~d-------~~~~s~~K~~~g~~g~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (367)
+....++| +++-|.||++++....+++..+.+. .+++... ..+-. ..+|+...
T Consensus 218 ~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~-------------l~~~~----TTSPSY~l 280 (417)
T PF01276_consen 218 SALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEA-------------LSMHQ----TTSPSYPL 280 (417)
T ss_dssp TCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHH-------------HHHHS-----SS--HHH
T ss_pred chhhccCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHH-------------HHHHc----CCChHHHH
Confidence 23345788 9999999999988888888877663 2233211 11111 23689999
Q ss_pred HHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHHHHH---c-CCccccCCCc-------------------------cCC
Q 017726 256 LYGLRAALDLI-FEEGLENVIERHRRLGKATRLAVEA---W-GLKNCTQKEE-------------------------WFS 305 (367)
Q Consensus 256 ~~al~~al~~~-~~~g~~~~~~~~~~~~~~l~~~L~~---~-g~~~~~~~~~-------------------------~~~ 305 (367)
++++..+.+.+ ...| ++..++..+++..+++.+++ . ++.+..++.- ...
T Consensus 281 mASlD~a~~~m~~~~G-~~l~~~~i~~a~~~R~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~whgf~~~~~~~~~lD 359 (417)
T PF01276_consen 281 MASLDVARAQMEEEEG-RELLEEAIELAEEFRKKINRLNDIWGFKVLGPEDVGGEGCWDLDPGENWHGFEGLADDYYMLD 359 (417)
T ss_dssp HHHHHHHHHHHSHHHH-HHHHHHHHHHHHHHHHHHHHHCCT-SSEESS-SEECTCCGCB--TT-TTT--TT--TTSEEE-
T ss_pred HHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhcCCCceEecCCccccCCccccccCccccchhchhcccCccccC
Confidence 99999999999 5665 56777888888889999854 2 5665554210 012
Q ss_pred CceEEEEcC----------CCCCHHHHHHHHHhhCCeEEc
Q 017726 306 DTVTAVIVP----------SHINSSEIVRRAWQRYNLSLG 335 (367)
Q Consensus 306 ~~~~~~~~~----------~~~~~~~l~~~L~~~~gv~v~ 335 (367)
..-+.+.+| .|+++..+.++|.++ ||.+-
T Consensus 360 P~K~ti~~pG~~~~g~~~~~Gi~g~~~~~~L~~~-~I~~E 398 (417)
T PF01276_consen 360 PTKLTINTPGIDADGELSELGIPGYIVEKYLREH-GIQVE 398 (417)
T ss_dssp TTEEEEE-STBETTSSB-SS---HHHHHHHHHHT-TEE-S
T ss_pred CcEEEEEccCcCcCCcccccCCCHHHHHHHHHHc-CCEEE
Confidence 222334432 356778888888765 98874
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.7e-19 Score=157.52 Aligned_cols=265 Identities=14% Similarity=0.123 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCC----
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESD---- 116 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~---- 116 (367)
...+.++++.+++++|.+. +++++||+.|++++....++|||.| +.+.++.... ...+..|..++.++.+
T Consensus 70 ~~s~~~lE~~va~~~G~~~---av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt~-ahIe~~Gav~vDi~~dea~~ 143 (450)
T TIGR02618 70 SRNFYHLERTVRELYGFKY---VVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTTR-YHQEKNGATFVDIIIDEAHD 143 (450)
T ss_pred CCcHHHHHHHHHHHHCCCe---EEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHHH-HHHHhCCeEEEeeecccccc
Confidence 3446699999999999876 8999999999988777778999976 4455555432 2246778876666443
Q ss_pred ------CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCc-cccc---cHHHHHHHHHhcCCCcEEEEeeeeccCc-e--
Q 017726 117 ------WGEGAKLDVLASKLAADTAHTIKAICIVHNETAT-GVTN---NLSKVRKLLDEYRHPALFLVDGVSSICA-I-- 183 (367)
Q Consensus 117 ------~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~t-G~~~---~~~~i~~~~~~~~~~~~vi~D~~~~~~~-~-- 183 (367)
..+.+|+++++++|++...+++++|.+..++|.. |... +++++.++|++ +|+.||.|+++.++. .
T Consensus 144 ~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~--~Gl~vi~DaAR~~gNA~~I 221 (450)
T TIGR02618 144 AQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEA--HGIKVFYDATRCVENAYFI 221 (450)
T ss_pred cccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHH--cCCEEEEEccchhhChhhh
Confidence 3577899999999987432456788888888866 7775 47899999999 999999999987642 1
Q ss_pred --------eeccc------cccceEEEecCCCcccCCCcceeee-eCHHHHHHhccCCCCceeechHHHHHHhhcCCccC
Q 017726 184 --------DFRMD------EWGIDVALTGSQKALSLPTGMGIVC-ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP 248 (367)
Q Consensus 184 --------~~~~~------~~~~d~~~~s~~K~~~g~~g~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (367)
..+.. -..+|.+++|++|...++.| |+++ .+++++++.+..... + .|..+.
T Consensus 222 ~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~G-G~l~~~d~~l~~k~r~~~~~------------~-eG~~ty 287 (450)
T TIGR02618 222 KEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIG-GFLCMNDDEMFQSAKELVVV------------F-EGMPSY 287 (450)
T ss_pred hcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCc-eEEEeCCHHHHHHHHHHhhh------------c-CCcccc
Confidence 11110 11589999999999987877 6666 788888877654211 1 011112
Q ss_pred CCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC--------CCCHH
Q 017726 249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS--------HINSS 320 (367)
Q Consensus 249 ~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 320 (367)
+......+.++..++....+. ....+....+++|.+.|++.|++++.| ..++.++++..+ ..++.
T Consensus 288 Ggla~r~~~ala~gL~e~~~~---~y~~~r~~~a~~La~~L~~~Gvpv~~p----~ggh~V~vda~~~lph~~~~~~p~~ 360 (450)
T TIGR02618 288 GGLAGRDMEAMAIGIREAVDY---EYIEHRVKQVRYLGDKLKAAGVPIVEP----VGGHAVFLDARRFLPHIPQDQFPAQ 360 (450)
T ss_pred CchhhhhHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHCCCcccCC----CCcceEEEEhHHhCCCCChhhChHH
Confidence 223333445555555554332 233445567899999999999999776 345567676521 23455
Q ss_pred HHHHHHHhhCCeEE
Q 017726 321 EIVRRAWQRYNLSL 334 (367)
Q Consensus 321 ~l~~~L~~~~gv~v 334 (367)
.|+-+|..+.||--
T Consensus 361 al~~~ly~~~gir~ 374 (450)
T TIGR02618 361 SLAASIYVETGVRS 374 (450)
T ss_pred HHHHHHHHHhCccE
Confidence 67777777767643
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-19 Score=144.47 Aligned_cols=286 Identities=17% Similarity=0.143 Sum_probs=196.2
Q ss_pred HHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCC-CeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHH
Q 017726 47 LLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPG-DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDV 125 (367)
Q Consensus 47 ~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~g-d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~ 125 (367)
++..+++--++.+ +.+.+..|+-+.+.+++++.+.|| ++|+..+| .||.+. .-+...+++++.+|.++++.++.|+
T Consensus 74 ls~a~~~dkpLt~-dnic~GvGsDE~ID~iiR~~c~PGkeKIl~cPP-tysMY~-v~A~iNd~eVvkvpl~pdF~lnvda 150 (375)
T KOG0633|consen 74 LSDALAQDKPLTS-DNICVGVGSDELIDLIIRCVCDPGKEKILDCPP-TYSMYV-VDAAINDAEVVKVPLNPDFSLNVDA 150 (375)
T ss_pred hhhhcccCCCCCc-cceEEecCcHHHHHHHHhheecCCccceeecCC-cceeEE-EEeecCCceEEEecCCCCccccHHH
Confidence 3333443333444 347777777899999999999999 78888877 455542 2245578999999999999999999
Q ss_pred HHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCcee---e-ccccccceEEEecCCC
Q 017726 126 LASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID---F-RMDEWGIDVALTGSQK 201 (367)
Q Consensus 126 l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~---~-~~~~~~~d~~~~s~~K 201 (367)
+.+.++.. .++|.+++++|+||||.+...+.|.++.+. +.|.+|++|++|--++-. . -+.+...-++.-++||
T Consensus 151 i~evl~~d--s~iK~~F~tSPgNPtg~~ik~~di~KiLe~-p~nglVVvDEAYidFsg~~S~~~lV~kYpNLivlqTlSK 227 (375)
T KOG0633|consen 151 IAEVLELD--SKIKCIFLTSPGNPTGSIIKEDDILKILEM-PDNGLVVVDEAYIDFSGVESRMKLVKKYPNLIVLQTLSK 227 (375)
T ss_pred HHHHHhcc--ccceEEEEcCCCCCCcccccHHHHHHHHhC-CCCcEEEEeeeeEeeccccccchHhHhCCceeehhhhhh
Confidence 99998865 488999999999999999998888888875 348899999998533221 1 1223344577778899
Q ss_pred cccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC---hHHHHH
Q 017726 202 ALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG---LENVIE 276 (367)
Q Consensus 202 ~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g---~~~~~~ 276 (367)
.| |..| +|+-+.+.++++-+...+. |+..+. .+..+||+.+.... ++..+.
T Consensus 228 sf-GLAGiRvG~~~~~~~ia~iln~~Ka--------------------PYNiS~---~~s~~AL~Als~~n~kkme~~rd 283 (375)
T KOG0633|consen 228 SF-GLAGIRVGYGAFPLSIAEILNRAKA--------------------PYNISV---AGSVAALAALSDSNGKKMEDVRD 283 (375)
T ss_pred hc-CcceeEeecccccHHHHHHHHhccC--------------------Cccccc---hhHHHHHHhcCcccchHHHHHHH
Confidence 88 5666 4888888888776654332 222333 34455666655332 666677
Q ss_pred HHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCC--CHHHHHHHHHhhCCeEEc-cCCCCCCCcEEEEeecC
Q 017726 277 RHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHI--NSSEIVRRAWQRYNLSLG-LGLNKVAGKVFRIGHLG 352 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~L~~~~gv~v~-~g~~~~~~~~iRi~~~~ 352 (367)
.+.+.+.+|...|... ++.-+. .+ ..++ ++.+++..+- -++.+...+..++||.|+ .|......+++||+ .|
T Consensus 284 aiv~er~RL~keLt~v~~~~~~~-gg-~daN-FiLi~v~~~~n~~akkly~q~at~~gVvVRfrgse~~c~G~lRit-vG 359 (375)
T KOG0633|consen 284 AIVRERERLFKELTEVPFLNDYP-GG-SDAN-FILIEVTGGDNGMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRIT-VG 359 (375)
T ss_pred HHHHHHHHHHHHhhcCccccCCC-Cc-cccc-EEEEEEcCCCcHHHHHHHHHHHHhcceEEEEcCCccccceeEEEE-cC
Confidence 7777777888888776 333111 11 1344 4556663332 245666677778899998 45556677899997 68
Q ss_pred CCCHHHHHHhhhhc
Q 017726 353 HLNEVMFNFQLLFQ 366 (367)
Q Consensus 353 ~~~~~~~~~~~l~~ 366 (367)
+.++-+...+-+++
T Consensus 360 t~EentvL~k~~K~ 373 (375)
T KOG0633|consen 360 TPEENTVLMKCLKQ 373 (375)
T ss_pred CcccchHHHHHHHh
Confidence 77777776665554
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-18 Score=157.28 Aligned_cols=299 Identities=18% Similarity=0.177 Sum_probs=193.3
Q ss_pred hHHHHHHHccCCCC--CCCCc-HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc---------CCCC-CeE
Q 017726 21 PDQVIRAMNRNNED--YRSPA-VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT---------LSPG-DRI 87 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~~~~-~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~---------~~~g-d~v 87 (367)
.+++.+++.+.... +.+.. ..+...++.+.++++++.+ .+++++||++|+..++... ..+| +.|
T Consensus 55 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i 131 (401)
T TIGR01885 55 HPKIVKALTEQAQKLTLSSRAFYNDVFGEFAEYVTKLFGYD---KVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAII 131 (401)
T ss_pred CHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhcCCC---EEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEE
Confidence 56777777664321 22221 3466788999999998742 5899999999999988753 1233 455
Q ss_pred EEEeCCcchHHHHHHHHH--------hC---CceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc-
Q 017726 88 ISFLIGQFSLLWIDQQQR--------LN---FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN- 155 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~--------~g---~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~- 155 (367)
+.....|++..+...... .+ ..+..++.+ |++++++++++.. +++.+|++..+++++|.+.|
T Consensus 132 ~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~-~~~~avi~E~v~~~~G~~~~~ 205 (401)
T TIGR01885 132 VSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYN-----NLEALEEALEDHG-PNVCAFIVEPIQGEAGVVVPD 205 (401)
T ss_pred EEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCCC-----CHHHHHHHHHhcC-CCEEEEEEeCccCCCCCccCC
Confidence 556556665432222211 11 112223222 7899999887543 46788899999999999987
Q ss_pred ---HHHHHHHHHhcCCCcEEEEeeeeccCce---e--eccccccceEEEecCCCcccCC-CcceeeeeCHHHHHHhccCC
Q 017726 156 ---LSKVRKLLDEYRHPALFLVDGVSSICAI---D--FRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAK 226 (367)
Q Consensus 156 ---~~~i~~~~~~~~~~~~vi~D~~~~~~~~---~--~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~~~~ 226 (367)
+++|.++|++ +|+++++|++|..... . ........|++++ +|.+++. ..+|+++.++++++.+....
T Consensus 206 ~~~l~~l~~l~~~--~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~~~--gK~l~~g~~~ig~v~~~~~i~~~~~~~~ 281 (401)
T TIGR01885 206 DGYLKKVRELCTK--HNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVLL--GKALSGGVYPVSAVLADDDVMLTIKPGE 281 (401)
T ss_pred HHHHHHHHHHHHH--cCCEEEEechhhCCCccchhhHHhhcCCCCCEEEe--eccccCCCCCcEEEEEcHHHHhhccCCC
Confidence 8999999999 9999999999753211 1 1222345687765 4988653 34688999999887665311
Q ss_pred CCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCC
Q 017726 227 SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSD 306 (367)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 306 (367)
. +. .++.+...+.+..++++.+.+++ +.++..++.+++++.|++++..++..-. ..+
T Consensus 282 ~----------------~~--t~~~~p~~~~aa~a~L~~i~~~~---l~~~~~~~~~~~~~~L~~l~~~~~~~~~--g~g 338 (401)
T TIGR01885 282 H----------------GS--TYGGNPLACAVAVAALEVLEEEK---LAENAEKLGEIFRDQLKKLPKPIITEVR--GRG 338 (401)
T ss_pred C----------------CC--CCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhccCCceeEEe--ecC
Confidence 0 11 22344555677777888877654 3457777899999999998544433111 133
Q ss_pred ceEEEEcCCC---CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 307 TVTAVIVPSH---INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 307 ~~~~~~~~~~---~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
.++.+.++++ .+..++++.|.++ ||.+.++ .+..+||+++...+++++.
T Consensus 339 ~~~~i~~~~~~~~~~~~~l~~~l~~~-Gv~v~~~----~~~~lRi~p~l~~t~~~i~ 390 (401)
T TIGR01885 339 LLNAIVIDESKTGRTAWDLCLKLKEK-GLLAKPT----HGNIIRLAPPLVITEEQLD 390 (401)
T ss_pred eeEEEEeccCcchhHHHHHHHHHHhC-CEEEEec----CCCEEEEeCCccCCHHHHH
Confidence 4555555332 2467899999754 9998753 2468999987666665544
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.2e-18 Score=159.21 Aligned_cols=280 Identities=14% Similarity=0.099 Sum_probs=191.9
Q ss_pred CCCcccccCCCCCChHHHHHHHccCCCC-----CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-
Q 017726 7 PGKNHLFVPGPVHIPDQVIRAMNRNNED-----YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT- 80 (367)
Q Consensus 7 ~~~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~- 80 (367)
|+|.....++|+.+|.-+.+.+.-..+. ..++....+..++-+++++++|.+... -++|+|||.|+..++...
T Consensus 83 P~ry~ghm~~~~~~paila~~~a~~~N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~~~-G~~TsGGT~ANl~aL~~AR 161 (608)
T TIGR03811 83 AGRYWGHMNSETLMPAILAYNYAMLWNGNNVAYESSPATSQMEEEVGKEFATLMGYKNGW-GHIVADGSLANLEGLWYAR 161 (608)
T ss_pred ccceEEECcCCCCHHHHHHHHHHHHhCCCCCccccCchHHHHHHHHHHHHHHHhCCCCCC-eEEeCChHHHHHHHHHHHH
Confidence 4577777887776666555555543332 235666788889999999999998643 679999999998755421
Q ss_pred --C-CC------------------------------------------------CC------eEEEEeCCcchHHHHHHH
Q 017726 81 --L-SP------------------------------------------------GD------RIISFLIGQFSLLWIDQQ 103 (367)
Q Consensus 81 --~-~~------------------------------------------------gd------~vl~~~~~~~~~~~~~~~ 103 (367)
. .| |. +++++...|+| +.+.+
T Consensus 162 ~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS--~~KAa 239 (608)
T TIGR03811 162 NIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYS--WLKAA 239 (608)
T ss_pred HhhhccchhhhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHH--HHHHH
Confidence 0 00 00 35555555766 55788
Q ss_pred HHhCC---ceEEEeCCCCCCCCHHHHHHHHhccCC--CCccEEEEEecCCCccccccHHHHHHHHHh-cCCCc--EEEEe
Q 017726 104 QRLNF---NVDVVESDWGEGAKLDVLASKLAADTA--HTIKAICIVHNETATGVTNNLSKVRKLLDE-YRHPA--LFLVD 175 (367)
Q Consensus 104 ~~~g~---~~~~v~~~~~~~~d~e~l~~~i~~~~~--~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~-~~~~~--~vi~D 175 (367)
..+|+ +++.||++.++++|+++|+++|++... ..+-+|+.+...+.+|.+.|+++|.++|++ ..+|+ |+++|
T Consensus 240 ~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVD 319 (608)
T TIGR03811 240 DIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVD 319 (608)
T ss_pred HHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeee
Confidence 88888 589999999999999999999975210 234567888999999999999999999943 22787 69999
Q ss_pred eeeccCc--eeec--------------------c----------------ccccceEEEecCCCcccCCCcceeeeeCHH
Q 017726 176 GVSSICA--IDFR--------------------M----------------DEWGIDVALTGSQKALSLPTGMGIVCASPK 217 (367)
Q Consensus 176 ~~~~~~~--~~~~--------------------~----------------~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~ 217 (367)
+|++... +..+ + .-..+|.++..+||++..|.++|.+++++.
T Consensus 320 AAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~ 399 (608)
T TIGR03811 320 AAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDI 399 (608)
T ss_pred ccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCH
Confidence 9998642 1111 0 012689999999999999999998888766
Q ss_pred HHHHhccCCCCceeec--hHHHHHHhhcCCcc-CCCCcHHHHHHHHHHHHHH--HHhChHHHHHHHHHHHHHHHHHHHHc
Q 017726 218 ALEASKTAKSVRVFFD--WKDYIKFYNLGTFW-PYTPSIQLLYGLRAALDLI--FEEGLENVIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 218 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~al~~al~~~--~~~g~~~~~~~~~~~~~~l~~~L~~~ 292 (367)
.......... .|.. ...... ..+.+. -++.+-...++++.+++.+ ...|+.++.++..++++++.+.|+++
T Consensus 400 ~~~~~~~~~a--~Yl~~~~~~~p~--~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~ 475 (608)
T TIGR03811 400 RMRDVISYFA--TYVFEKGADIPA--LLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNL 475 (608)
T ss_pred HHHHHHhcCc--chhccccccCcc--cccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4433322211 1110 000000 001110 1122334457888888887 77889999999999999999999985
Q ss_pred C
Q 017726 293 G 293 (367)
Q Consensus 293 g 293 (367)
+
T Consensus 476 ~ 476 (608)
T TIGR03811 476 E 476 (608)
T ss_pred c
Confidence 3
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-17 Score=147.33 Aligned_cols=213 Identities=19% Similarity=0.161 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 119 (367)
+....+++.++++.|... ++..+||..|+..++..++.+|++++.....|.+.+ +.......|++...++.+
T Consensus 77 Pt~~~le~~iaal~ga~~---~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~--- 150 (409)
T KOG0053|consen 77 PTRDVLESGIAALEGAAH---ALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVD--- 150 (409)
T ss_pred CchHHHHHHHHHHhCCce---EEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechh---
Confidence 446688889999998776 456688899999999999999999999988777764 556777899999888876
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecC
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS 199 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~ 199 (367)
|++.++++++ +++++|++.+|.||+..+.|++++.++||+ +|++|++|++-+.+ ...+....|+|+++.|.
T Consensus 151 --~~~~~~~~i~----~~t~~V~~ESPsNPll~v~DI~~l~~la~~--~g~~vvVDnTf~~p-~~~~pL~lGADIV~hSa 221 (409)
T KOG0053|consen 151 --DLKKILKAIK----ENTKAVFLESPSNPLLKVPDIEKLARLAHK--YGFLVVVDNTFGSP-YNQDPLPLGADIVVHSA 221 (409)
T ss_pred --hHHHHHHhhc----cCceEEEEECCCCCccccccHHHHHHHHhh--CCCEEEEeCCcCcc-cccChhhcCCCEEEEee
Confidence 6889999998 467999999999999999999999999999 99999999997754 34566667899999999
Q ss_pred CCcccCCCcc--eeeeeC-HHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 200 QKALSLPTGM--GIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 200 ~K~~~g~~g~--g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
+|+|+|...+ |.++.+ +++.+++.... + .-| +.++.....-+...++. +.-+++
T Consensus 222 TKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~-------------~-~lg----~~~~p~~~~ll~Rglkt-----l~lRi~ 278 (409)
T KOG0053|consen 222 TKYIGGHSDVIGGSVVLNSEELASRLKFLQ-------------E-DLG----WCEDPFDLFLLSRGLKT-----LHLRIN 278 (409)
T ss_pred eeeecCCcceeeeEEecCcHHHHHHHHHHH-------------H-Hhc----CCCCHHHHHHHhcCcch-----hhhhHH
Confidence 9999987553 777775 77766665321 0 012 23554322222212211 333566
Q ss_pred HHHHHHHHHHHHHHHc
Q 017726 277 RHRRLGKATRLAVEAW 292 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~ 292 (367)
+..+++..+.+.|++.
T Consensus 279 ~~~ena~~~A~~Le~~ 294 (409)
T KOG0053|consen 279 KHSENALKIALLLEAH 294 (409)
T ss_pred HHHHHHHHHHHHhhhC
Confidence 6777777788888775
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-17 Score=151.88 Aligned_cols=269 Identities=13% Similarity=0.090 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-C-CCCCeEEEEeCCcchHHHHHHHHHhCC------------
Q 017726 43 LTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-L-SPGDRIISFLIGQFSLLWIDQQQRLNF------------ 108 (367)
Q Consensus 43 ~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~-~~gd~vl~~~~~~~~~~~~~~~~~~g~------------ 108 (367)
...++.+.+.+..+. +.+++++||++|+..++... . ..+++|++.++.|++....... ..+.
T Consensus 72 ~~~~la~~l~~~~~~---~~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~-~~~~~~~~~~~~~~~~ 147 (377)
T PRK02936 72 LQEEVASLLAENSAG---DLVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMS-ATGQEKIKEGFGPLLP 147 (377)
T ss_pred HHHHHHHHHHhcCCC---CEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhh-ccCCccccccCCCCCC
Confidence 334444444443332 35899999999999998742 2 2345788888888865422221 1121
Q ss_pred ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce-
Q 017726 109 NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI- 183 (367)
Q Consensus 109 ~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~- 183 (367)
.+..++. .|++++++.+. +++++|++..++++.|...+ +++|.++|++ +|+++|+|++|.....
T Consensus 148 ~~~~~~~-----~d~~~l~~~~~----~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~--~~~~lI~DEv~~g~g~~ 216 (377)
T PRK02936 148 GFTHVPF-----NDIKALKEVMN----EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKK--FGALLIIDEVQTGIGRT 216 (377)
T ss_pred CceEeCC-----CCHHHHHHhcc----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHH--cCCEEEEeccccCCCcC
Confidence 1112221 17899999886 46799999999999887753 8899999999 9999999999863221
Q ss_pred --eecc--ccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHH
Q 017726 184 --DFRM--DEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGL 259 (367)
Q Consensus 184 --~~~~--~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 259 (367)
.+.. .....|++ +.+|.+++...+|++++++++.+.+..... . ..+..+...+++.
T Consensus 217 g~~~~~~~~~~~~di~--t~sK~l~~G~~ig~v~~~~~~~~~~~~~~~----------------~--~t~~~~~~~~aaa 276 (377)
T PRK02936 217 GTLFAYEQFGLDPDIV--TVAKGLGNGIPVGAMIGKKELGTAFGPGSH----------------G--STFGGNPLAMAAA 276 (377)
T ss_pred chhhHHHhhCCCCcEE--EEcccccCCCccEEEEEcHHHHhhccCCCC----------------C--CCCCCCHHHHHHH
Confidence 1111 11234654 568999644347999999998777653210 1 1224566666777
Q ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccC
Q 017726 260 RAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLG 337 (367)
Q Consensus 260 ~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g 337 (367)
.++++.+... ...++..++.+++++.|++. ++.....-. ..+.++++.+++ +..++.+.|.+ .||.+.++
T Consensus 277 ~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~--~~g~~~~i~~~~--~~~~~~~~l~~-~gv~v~~~ 348 (377)
T PRK02936 277 KEVLQVIKQP---SFLEEVQEKGEYFLQKLQEELEHLECVKNIR--GKGLMIGIECTE--EVAPVIEQLRE-EGLLVLSA 348 (377)
T ss_pred HHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhhCCcEEeEe--ecceEEEEEecc--hHHHHHHHHHH-CCeEEecC
Confidence 7788776443 34456777888888888773 344332111 133567787743 36678887755 59998763
Q ss_pred CCCCCCcEEEEeecCCCCHHH
Q 017726 338 LNKVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 338 ~~~~~~~~iRi~~~~~~~~~~ 358 (367)
- .+.+|+++....++++
T Consensus 349 g----~~~lRi~p~~~~~~~~ 365 (377)
T PRK02936 349 G----PNVIRLLPPLVVTKEE 365 (377)
T ss_pred C----CCEEEEECCcccCHHH
Confidence 2 3689999755555443
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-17 Score=150.63 Aligned_cols=265 Identities=13% Similarity=0.069 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC------
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES------ 115 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~------ 115 (367)
..+.++++.+++++|.+. ++.+++||.|+++++...+.+||.| +...++.... ...+..|.....+..
T Consensus 78 ~s~~~LE~~vAe~lG~e~---aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~-ahI~~~Ga~fvDi~~d~a~~~ 151 (460)
T PRK13237 78 RNFYHLEETVQEYYGFKH---VVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTR-YHQELNGGIFVDIIIDEAHDA 151 (460)
T ss_pred CcHHHHHHHHHHHHCCCe---EEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhH-HHHHhCCcEEEeeeccccccc
Confidence 346689999999999876 7899999999998776678899964 4343454432 224667775555531
Q ss_pred ----CCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCc-cccc---cHHHHHHHHHhcCCCcEEEEeeeeccCcee---
Q 017726 116 ----DWGEGAKLDVLASKLAADTAHTIKAICIVHNETAT-GVTN---NLSKVRKLLDEYRHPALFLVDGVSSICAID--- 184 (367)
Q Consensus 116 ----~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~t-G~~~---~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~--- 184 (367)
+..+.+|++.++++|++.+.++++++.+..++|.. |... +++++.++|++ +|+.||.|+++.++...
T Consensus 152 ~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~--~Gl~Vi~DaAra~gna~fI~ 229 (460)
T PRK13237 152 QSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDK--HGIKVFFDATRCVENAYFIK 229 (460)
T ss_pred ccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHH--cCCEEEEECcchhcChhhhc
Confidence 23578999999999987543566788888888888 5665 67999999999 99999999998876321
Q ss_pred -----e---ccc------cccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCC
Q 017726 185 -----F---RMD------EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT 250 (367)
Q Consensus 185 -----~---~~~------~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (367)
+ +.. -...|.+++|++|.+.++.|..++.-++++.++++....... |.-+.+.
T Consensus 230 ~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~GG~i~t~D~eL~~~~r~~~~~~e-------------G~~tygg 296 (460)
T PRK13237 230 EREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIGGFLAMNDEELFDEAKELVVVYE-------------GMPSYGG 296 (460)
T ss_pred ccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCceEEEECCHHHHHHHHHhccccC-------------CCcCCCC
Confidence 1 110 014799999999999877763444456667777765422110 1101222
Q ss_pred CcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEc----C----CCCCHHHH
Q 017726 251 PSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIV----P----SHINSSEI 322 (367)
Q Consensus 251 ~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~l 322 (367)
.+.-.+.++..++....+. ...++.....++|.+.|++.|++++.| .+++.++++. | ...++..|
T Consensus 297 ~~grd~~alAvgl~E~~~~---~y~~~ri~~~~~l~~~L~~~Gvpv~~p----~ggH~v~vda~~~lph~~~~~~p~~al 369 (460)
T PRK13237 297 MAGRDMEAMAIGIEESVQY---EYIEHRVGQVRYLGEKLLAAGVPIVEP----VGGHAVFLDARRFLPHLPQDQFPAQAL 369 (460)
T ss_pred hhhhHHHHHHhHHHhhchH---HHHHHHHHHHHHHHHHHHHCCCceecC----CCceEEEEEhHHhCCCCCcccChHHHH
Confidence 3233445555555544333 445556678899999999999999987 3445566654 1 12355678
Q ss_pred HHHHHhhCCeEE
Q 017726 323 VRRAWQRYNLSL 334 (367)
Q Consensus 323 ~~~L~~~~gv~v 334 (367)
+-.|..+.||--
T Consensus 370 ~~~ly~~~GiR~ 381 (460)
T PRK13237 370 AAELYIESGVRS 381 (460)
T ss_pred HHHHHHHhCcCe
Confidence 888877767644
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-17 Score=154.15 Aligned_cols=271 Identities=15% Similarity=0.114 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc---C-----CCCCeEEEEeCCcchHHHHHHHHHhC------
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT---L-----SPGDRIISFLIGQFSLLWIDQQQRLN------ 107 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~---~-----~~gd~vl~~~~~~~~~~~~~~~~~~g------ 107 (367)
+...++.+.++++.+. +.+.+++||++|+..++... . ...++|+..+..|++..+. .....+
T Consensus 82 ~~~~~l~~~l~~~~~~---~~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~-~~~~~~~~~~~~ 157 (403)
T PRK05093 82 EPALRLAKKLIDATFA---ERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLF-TVSVGGQPKYSD 157 (403)
T ss_pred HHHHHHHHHHHhhCCC---CEEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhh-hHhhcCChhhhh
Confidence 3345888888887653 35899999999999988742 1 1245688888777775421 111111
Q ss_pred ------CceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc-c----HHHHHHHHHhcCCCcEEEEee
Q 017726 108 ------FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN-N----LSKVRKLLDEYRHPALFLVDG 176 (367)
Q Consensus 108 ------~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~-~----~~~i~~~~~~~~~~~~vi~D~ 176 (367)
.++..++.+ |++++++.+. +++++|+++ |.|++|.+. + +++|+++|++ ||+++|+|+
T Consensus 158 ~~~~~~~~~~~~~~~-----d~~~l~~~l~----~~~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~--~g~~lI~DE 225 (403)
T PRK05093 158 GFGPKPADITHVPFN-----DLAAVKAVID----DHTCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQ--HNALLIFDE 225 (403)
T ss_pred cCCCCCCCcEEeCCC-----CHHHHHHHhc----CCeEEEEEe-cccCCCCCccCCHHHHHHHHHHHHH--cCCEEEEec
Confidence 112222222 7899999886 467888888 556665443 3 8899999999 999999999
Q ss_pred eeccCcee---ec--cccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCC
Q 017726 177 VSSICAID---FR--MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTP 251 (367)
Q Consensus 177 ~~~~~~~~---~~--~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (367)
+|+..... .. ......|+. |.+|.+++...+|++++++++++.+..... +. .+..
T Consensus 226 v~~g~g~~g~~~~~~~~~~~pdi~--s~sK~l~~G~rig~vv~~~~i~~~l~~~~~----------------~~--t~~~ 285 (403)
T PRK05093 226 VQTGMGRTGDLFAYMHYGVTPDIL--TSAKALGGGFPIGAMLTTAEIASHFKVGTH----------------GS--TYGG 285 (403)
T ss_pred hhhCCCCCccchhhhhcCCCCCEE--EecccccCCcceEEEEEcHHHHhhcCCCCC----------------CC--CCCC
Confidence 98732211 11 112235644 568998654447999999998877753211 11 2234
Q ss_pred cHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcC--CccccCCCccCCCceEEEEcCCCC--CHHHHHHHHH
Q 017726 252 SIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG--LKNCTQKEEWFSDTVTAVIVPSHI--NSSEIVRRAW 327 (367)
Q Consensus 252 ~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~L~ 327 (367)
+...+++..++++.+.+. +..++++++.+++.+.|++++ +.+...-+ ..+.++++.+++.. +..++++.|.
T Consensus 286 ~~~~~~aa~a~L~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--~~G~~~~~~l~~~~~~~~~~~~~~l~ 360 (403)
T PRK05093 286 NPLACAVAEAVFDIINTP---EVLEGVKARRQRFVDGLQKINQKYGVFSEIR--GMGLLIGAELKPQYKGRARDFLNAAA 360 (403)
T ss_pred CHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHhhCCCeEeEe--eCceEEEEEecCcchhHHHHHHHHHH
Confidence 555556667777776543 345688889999999998863 22221100 23456777764432 4568999997
Q ss_pred hhCCeEEccCCCCCCCcEEEEeecCCCCHHH
Q 017726 328 QRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 328 ~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~ 358 (367)
++ ||.+.++ ..+++|+++....++++
T Consensus 361 ~~-Gv~v~~~----g~~~lRl~~~~~~~~~~ 386 (403)
T PRK05093 361 EE-GVMVLVA----GPDVLRFAPSLVIEEAD 386 (403)
T ss_pred HC-CeEEecC----CCCEEEEeCCCCCCHHH
Confidence 65 9998863 23679997655555444
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-18 Score=140.86 Aligned_cols=331 Identities=16% Similarity=0.188 Sum_probs=230.8
Q ss_pred CCCCCCcccccCCCCCChHHHHHHHccCC------------CCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecC-Chh
Q 017726 4 MYAPGKNHLFVPGPVHIPDQVIRAMNRNN------------EDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPT-TGT 70 (367)
Q Consensus 4 ~~~~~~~~~~~~~p~~~~~~v~~a~~~~~------------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~-ggt 70 (367)
|..|.+..+|.|||..+|..|+..+.+.. .+||+.++..+.++.+..+++++++++...|+|.. |||
T Consensus 2 ~~a~~~vvnFaaGPAklp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPdn~~vlf~QGGGt 81 (370)
T KOG2790|consen 2 MDAPERVVNFAAGPAKLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPDNYKVLFLQGGGT 81 (370)
T ss_pred CCCccceeecCCCcccCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHHcCCCceeEEEEeCCCc
Confidence 45689999999999999999999988842 24677788899999999999999999877776655 456
Q ss_pred HHHHHHHHccC--CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEe-CCC-C--CCCCHHHHHHHHhccCCCCccEEEEE
Q 017726 71 GAWESALTNTL--SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVE-SDW-G--EGAKLDVLASKLAADTAHTIKAICIV 144 (367)
Q Consensus 71 ~al~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~-~~~-~--~~~d~e~l~~~i~~~~~~~~~lv~~~ 144 (367)
+-+-.+...+. ..|+..-....+.||.....-++.+|..-..++ ..+ . .-+|.+.++. + ++.+.+++|
T Consensus 82 ~qFaAv~lNL~glK~g~~AdYiVTGsWS~KA~~EAkk~~~~~~V~~~~k~y~ygkvPd~~~w~~--~----~da~yvyyC 155 (370)
T KOG2790|consen 82 GQFAAVPLNLIGLKHGRCADYVVTGSWSAKAAEEAKKYGTPNIVIPKLKSYTYGKVPDPSTWEL--N----PDASYVYYC 155 (370)
T ss_pred ccccccchhhhccccCCccceEEeccccHHHHHHHHhhCCceEEeccccccccCcCCChhhccc--C----CCccEEEEe
Confidence 66555544444 445433333355677664456677775533333 221 1 2234444432 2 355799999
Q ss_pred ecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhcc
Q 017726 145 HNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKT 224 (367)
Q Consensus 145 ~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~ 224 (367)
...+..|.-.+.-. . ..++|+++++|..+-+.+.++|+.. .+++..+.+|.+ |+.|+-+++++++++.+...
T Consensus 156 aNETVHGVEf~~~P---~--~~~~~~vlVaDmSSnflSrpvDvsk--~gvi~aGAQKN~-G~aG~Tvvivr~dllg~~~~ 227 (370)
T KOG2790|consen 156 ANETVHGVEFDFIP---V--NDPKGAVLVADMSSNFLSRPVDVSK--FGVIFAGAQKNV-GPAGVTVVIVRKDLLGNALD 227 (370)
T ss_pred cCceeeceecCCCC---C--CCCCCceEEEecccchhcCCccchh--cceEEecccccc-CccccEEEEEehhhhccccc
Confidence 99999998775332 1 1348999999999999999999985 568888999999 69999999999999876554
Q ss_pred CCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc
Q 017726 225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAW-GLKNCTQKEE 302 (367)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 302 (367)
.. +..++|.... .+....+|+|...+..+...++|+.+.| ++.+.+..++.++.+++.+.+. |+...+-++.
T Consensus 228 ~t--P~v~dyk~~~----~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~s~gfy~cpVe~~ 301 (370)
T KOG2790|consen 228 IT--PSVLDYKIMD----KNNSLYNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDNSNGFYRCPVEPS 301 (370)
T ss_pred CC--ccccceeeec----cccccccCCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCeEEcccchh
Confidence 31 1122221111 2333567899999999999999998886 9999999999999999999997 8877776666
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHH
Q 017726 303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV 357 (367)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~ 357 (367)
.++-.-+.|++.++.=.++|.+...+++-+.+. |. ..-+.+|.|+++..+-+
T Consensus 302 ~RS~MNV~Fri~~d~Le~eFLkeA~~~~mv~LK-Gh--RSVGGiRASlYNAisv~ 353 (370)
T KOG2790|consen 302 VRSRMNVPFRIEKDELEAEFLKEAAKEHMVQLK-GH--RSVGGIRASLYNAISVE 353 (370)
T ss_pred hhhhcccceeecchHHHHHHHHHHHHhhhhccc-cc--cccccchhhhhccccHH
Confidence 677767888885322223444444344344332 11 11245999998876544
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.6e-20 Score=158.35 Aligned_cols=256 Identities=18% Similarity=0.177 Sum_probs=172.6
Q ss_pred ChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH-
Q 017726 20 IPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL- 98 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~- 98 (367)
..+++++++.+....+..|+......++++.+++++|.+. .+|+.+||.|+.+++.+++.|++.|+...+.|....
T Consensus 7 ~~~~m~~a~~~a~~gd~~Yg~D~~~~~l~~~i~~l~g~e~---a~f~~sGT~An~~al~~~~~~~~~vi~~~~aHi~~~E 83 (290)
T PF01212_consen 7 PTPAMLEAMAAANVGDDAYGEDPTTARLEERIAELFGKEA---ALFVPSGTMANQLALRAHLRPGESVICADTAHIHFDE 83 (290)
T ss_dssp S-HHEEHHHHHTTSB-CCTTSSHHHHHHHHHHHHHHTSSE---EEEESSHHHHHHHHHHHHHHTTEEEEEETTEHHHHSS
T ss_pred CCHHHHHHHHccccCCcccCCChhHHHHHHHHHHHcCCCE---EEEeCCCChHHHHHHHHHHhcCCceeccccceeeeec
Confidence 4566788887766555567777899999999999999775 578999999999999998899999999888665543
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCC--CCccEEEEEecCCCc-ccccc---HHHHHHHHHhcCCCcEE
Q 017726 99 WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA--HTIKAICIVHNETAT-GVTNN---LSKVRKLLDEYRHPALF 172 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~--~~~~lv~~~~~~n~t-G~~~~---~~~i~~~~~~~~~~~~v 172 (367)
........|.++..++.+.++.+|+++|++.+.+... .++++|++++++|.. |.+++ +++|.++||+ +|+.+
T Consensus 84 ~ga~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~--~gl~l 161 (290)
T PF01212_consen 84 TGAIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELARE--HGLPL 161 (290)
T ss_dssp TTHHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHH--HT-EE
T ss_pred cchhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHh--CceEE
Confidence 2233466899999999876689999999999998432 578999999998875 67775 6678888999 99999
Q ss_pred EEeeee---ccCcee---eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCc
Q 017726 173 LVDGVS---SICAID---FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTF 246 (367)
Q Consensus 173 i~D~~~---~~~~~~---~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (367)
+.|++= +..... -+.. .++|++++|++|.++.+.| ++++++++++++...+. +++- |..
T Consensus 162 hmDGARl~~a~~~~~~~~~e~~-~~~D~v~~~~tK~~g~~~G-avl~~~~~~i~~~~~~~------------k~~g-g~~ 226 (290)
T PF01212_consen 162 HMDGARLANAAAALGVSLAEIA-AGADSVSFGGTKNGGAPGG-AVLAGNKEFIAKARRQR------------KRLG-GGM 226 (290)
T ss_dssp EEEETTHHHHHCHHHHHHHHHH-TTSSEEEEETTSTT-SSSE-EEEEESHHHHHHHHHHH------------HHHT-HHH
T ss_pred EEehhhHHHhhhcccccHHHHh-hhCCEEEEEEEcccccccc-eEEEechHHHHHHHHHH------------HHhc-cCe
Confidence 999872 111111 1222 3799999999999865554 99999999766543210 1111 100
Q ss_pred cCCCCcHHHHHHH--HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccC
Q 017726 247 WPYTPSIQLLYGL--RAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQ 299 (367)
Q Consensus 247 ~~~~~~~~~~~al--~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 299 (367)
. ...+.....+ ..++..+ +. ......+..+.++.+.+.|+..+..+..+
T Consensus 227 -~-~~G~~~a~~~~~~~~l~~l-~~-~~~~~~~~~~~A~~La~~l~~~~~~~~~~ 277 (290)
T PF01212_consen 227 -R-QAGVLAAAELYQFAALRAL-EL-WLERARHANAMAKRLAAGLEALGGVLPRP 277 (290)
T ss_dssp -H-HTTHHHHHHHHHHHHHCHE-EC-SHHHHHCHHHHHHCHHHCHHEECEEEETT
T ss_pred -e-ecceeeeechhhHHHHHHH-Hh-hHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence 0 0001110000 1122111 11 23456677788999999998887655443
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-17 Score=157.25 Aligned_cols=228 Identities=11% Similarity=0.064 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC-C
Q 017726 40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW-G 118 (367)
Q Consensus 40 ~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~ 118 (367)
+.....+.++..|+.+|++. ...++||+|.++.+++++.+.+||+|++..+.|=|.. ..+...|++++++.... .
T Consensus 203 p~G~I~eAq~~aA~~fgA~~--t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~--~al~L~ga~Pvyl~P~~~~ 278 (755)
T PRK15029 203 HTGAFGESEKYAARVFGADR--SWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIE--QGLILTGAKPVYMVPSRNR 278 (755)
T ss_pred CCcHHHHHHHHHHHHhCCCc--EEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHH--HHHHHcCCeEEEecccccc
Confidence 34667899999999999987 4688899999999999999999999999999887754 45778899999886432 1
Q ss_pred ----CCCC-----HHHHHHHHhccCC------CCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccC--
Q 017726 119 ----EGAK-----LDVLASKLAADTA------HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSIC-- 181 (367)
Q Consensus 119 ----~~~d-----~e~l~~~i~~~~~------~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~-- 181 (367)
+.++ ++.+++++++++. ++++++++++| |..|.+.|+++|.++|++ ++++|++|+||+.-
T Consensus 279 ~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~P-TY~Gv~~di~~I~~~~h~--~~~~llvDEAhGah~~ 355 (755)
T PRK15029 279 YGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEK--TSDRLHFDEAWYGYAR 355 (755)
T ss_pred cCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECC-CCcceeeCHHHHHHHHHh--cCCeEEEECccccccc
Confidence 2344 8999999987641 23448888876 689999999999999999 99999999998751
Q ss_pred -ceeec----c-----ccccce-EEEecCCCcccCCCcceeeeeCHH--HH--HHhccCCCCceeechHHHHHHhhcCCc
Q 017726 182 -AIDFR----M-----DEWGID-VALTGSQKALSLPTGMGIVCASPK--AL--EASKTAKSVRVFFDWKDYIKFYNLGTF 246 (367)
Q Consensus 182 -~~~~~----~-----~~~~~d-~~~~s~~K~~~g~~g~g~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (367)
+..++ + ...|+| +++-|.||++++....+++-++.. .+ +++. ..+..-
T Consensus 356 F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~id~~r~~---------------~~l~~~-- 418 (755)
T PRK15029 356 FNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFN---------------QAYMMH-- 418 (755)
T ss_pred cCccccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccccCHHHHH---------------HHHHHH--
Confidence 11111 1 125788 999999999988777777776443 11 1111 111111
Q ss_pred cCCCCcHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHc
Q 017726 247 WPYTPSIQLLYGLRAALDLIFE-EGLENVIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 247 ~~~~~~~~~~~al~~al~~~~~-~g~~~~~~~~~~~~~~l~~~L~~~ 292 (367)
...+|+...++++..|...+.. .| ++..++..+.+..+++.+++.
T Consensus 419 qSTSPSY~LmASLD~ar~~m~~~~G-~~l~~~~i~~~~~~r~~l~~~ 464 (755)
T PRK15029 419 ATTSPLYAICASNDVAVSMMDGNSG-LSLTQEVIDEAVDFRQAMARL 464 (755)
T ss_pred cCCCcHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhc
Confidence 1336899999999999998886 55 556777778888888888765
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-17 Score=150.73 Aligned_cols=297 Identities=15% Similarity=0.112 Sum_probs=181.0
Q ss_pred hHHHHHHHccCCCCC-CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCcchH
Q 017726 21 PDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQFSL 97 (367)
Q Consensus 21 ~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~~~~ 97 (367)
.+++++++.+..... ..+. ....++++.+++.+....+..+++++||++|+..++... ..++++|++.+..|++.
T Consensus 46 ~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~~~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~ 123 (375)
T PRK04260 46 HPQVQQALQKQAGLIWHSPN--LYLNSLQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGR 123 (375)
T ss_pred CHHHHHHHHHHHHhcCcccC--ccCCHHHHHHHHHHhcCcCCEEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcc
Confidence 455777777754321 1111 223466777777664443334689999999999888753 24567888888887765
Q ss_pred HHHHHHHHhCCc---------eEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----HHHHHHHHH
Q 017726 98 LWIDQQQRLNFN---------VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLD 164 (367)
Q Consensus 98 ~~~~~~~~~g~~---------~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~~i~~~~~ 164 (367)
.+.. +...+.+ +..++.. ...|++++++++. +++++|++++++|++|.+.+ ++++.++|+
T Consensus 124 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~dl~~l~~~l~----~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~ 196 (375)
T PRK04260 124 TFGS-MSATGQDKIKDGFGDGVPHFSYA--IFNDLNSVKALVN----KNTAAVMLELVQGESGVLPADKDFVKALADYCQ 196 (375)
T ss_pred cHHH-HhccCCcccCCCCCCCCCCeEEe--CCCCHHHHHHhcC----CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHH
Confidence 3221 1111111 1111110 0137899998886 35689999999999998875 799999999
Q ss_pred hcCCCcEEEEeeeeccCcee---ec--cccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHH
Q 017726 165 EYRHPALFLVDGVSSICAID---FR--MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIK 239 (367)
Q Consensus 165 ~~~~~~~vi~D~~~~~~~~~---~~--~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (367)
+ +|+++++|++|...... .. ......|++ +++|.+++...+|++++++++.+.+.....
T Consensus 197 ~--~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~------------ 260 (375)
T PRK04260 197 E--TGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIF--TLAKGLANGVPVGAMLAKSSLGGAFGYGSH------------ 260 (375)
T ss_pred H--cCCEEEEechhhCCCcccchhhhHhhCCCCCEE--EecccccCCcceEEEEEcHHHHhhcCCCCC------------
Confidence 9 99999999998532211 11 112345655 678999644447999999998776643211
Q ss_pred HhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCCceEEEEcCCCC
Q 017726 240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSHI 317 (367)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ 317 (367)
.+ .++.+...+.+..++++.+...+ ..++..++.+++++.|++. ....+..-. ..+.++++.+. .
T Consensus 261 ---~~---t~~~~~~~~~aa~a~l~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~g~~~~~~~~--~ 327 (375)
T PRK04260 261 ---GS---TFGGNKLSMAAASATLDIMLTAG---FLEQALENGNYLQEQLQKALQDKETVTTVR--GLGYMIGIETT--A 327 (375)
T ss_pred ---CC---CCCcCHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHhhCCCeeEEe--ccceEEEEEec--C
Confidence 01 23445555666666777665443 3334444455555555443 111111100 14556777762 3
Q ss_pred CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 318 NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 318 ~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
+..++.+.+.++ ||.+.+. ....+|+++....+++|+.
T Consensus 328 ~~~~~~~~l~~~-Gi~v~~~----~~~~lR~~~~~~~t~~~i~ 365 (375)
T PRK04260 328 DLSQLVEAARDK-GLIVLTA----GTNVIRLLPPLTLTKEEIE 365 (375)
T ss_pred cHHHHHHHHHhC-CCEEecC----CCCEEEEcCCCccCHHHHH
Confidence 567899998754 9998754 2367999987777755444
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-17 Score=149.78 Aligned_cols=274 Identities=14% Similarity=0.085 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC--------CCCCeEEEEeCCcchHHHHHHHHHhCC-----
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--------SPGDRIISFLIGQFSLLWIDQQQRLNF----- 108 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~----- 108 (367)
+...++.++|+++.+. +.+.+++||++|+..++.... ...++|+..+.+|++.... .....+.
T Consensus 77 ~~~~~la~~L~~~~~~---~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~-~~~~~~~~~~~~ 152 (397)
T TIGR03246 77 EPVLRLAKKLVDATFA---DKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLF-TVSVGGQPKYSQ 152 (397)
T ss_pred HHHHHHHHHHHhhCCC---CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHH-HHHhcCCccccc
Confidence 4567889999988754 258999999999999887531 1345688888778775421 1222221
Q ss_pred -------ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc-c---HHHHHHHHHhcCCCcEEEEeee
Q 017726 109 -------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN-N---LSKVRKLLDEYRHPALFLVDGV 177 (367)
Q Consensus 109 -------~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~-~---~~~i~~~~~~~~~~~~vi~D~~ 177 (367)
.+..++. .|++++++++. +++++|+++.++++.|.+. | +++|+++|++ +|+++|+|++
T Consensus 153 ~~~~~~~~~~~~~~-----~d~~~l~~~l~----~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~--~g~llI~DEv 221 (397)
T TIGR03246 153 GFAPLPGGIKHAPY-----NDLAAAKALIS----DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDR--HNALLIFDEV 221 (397)
T ss_pred CCCCCCCceEEeCC-----CCHHHHHHHhc----cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHH--cCCEEEEech
Confidence 1222222 27899999987 4678999998777778664 2 8899999999 9999999999
Q ss_pred eccCcee-----eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCc
Q 017726 178 SSICAID-----FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPS 252 (367)
Q Consensus 178 ~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (367)
+...... .......+|++ +.+|.++|...+|++++++++++.+..... .. .+..+
T Consensus 222 ~tG~Gr~G~~~a~~~~gv~pDi~--t~~K~lggG~pigav~~~~~i~~~~~~~~~---------------~~---t~~~~ 281 (397)
T TIGR03246 222 QTGVGRTGELYAYMHYGVTPDIL--TSAKALGGGFPIGAMLTTTEIAAHLKVGTH---------------GT---TYGGN 281 (397)
T ss_pred hhcCCccccchhhhhcCCCCCEE--EeehhhhCCcceeEEEEcHHHHHhccCCCc---------------CC---CCCCC
Confidence 8432111 11112246766 558988654447999999998776642210 11 22345
Q ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcC--CccccCCCccCCCceEEEEcCCC--CCHHHHHHHHHh
Q 017726 253 IQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG--LKNCTQKEEWFSDTVTAVIVPSH--INSSEIVRRAWQ 328 (367)
Q Consensus 253 ~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~ 328 (367)
...+++..++++.+.+. ++.++.+++.+++.+.|++++ +.+...-. ..+.++.+.+.+. .....+++.|.+
T Consensus 282 p~~~aaa~a~l~~~~~~---~l~~~~~~~~~~l~~~L~~l~~~~~~~~~vr--g~G~~~~i~~~~~~~~~~~~~~~~l~~ 356 (397)
T TIGR03246 282 PLACAVAGKVLDLVNTP---ELLAGVKQRHDLFVDGLEKINARYNVFSEIR--GKGLLIGAVLTEAYQGKAKQFVNAAAE 356 (397)
T ss_pred HHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHhcCCCeEeee--cCceEEEEEEcCchhhHHHHHHHHHHH
Confidence 55566667777776543 456788889999999998863 33322111 1233444544221 235678888876
Q ss_pred hCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 329 RYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 329 ~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
+ ||.+.+. ..+++|+++....+++++.
T Consensus 357 ~-Gv~~~~~----g~~~lR~~p~~~~t~~~i~ 383 (397)
T TIGR03246 357 E-GVIALIA----GPNVVRFAPSLVISDDDID 383 (397)
T ss_pred C-CeEEeec----CCCEEEEeCCCCCCHHHHH
Confidence 5 9988652 1368999876666655443
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.3e-17 Score=152.65 Aligned_cols=298 Identities=18% Similarity=0.162 Sum_probs=186.8
Q ss_pred hHHHHHHHccCCCC--CCC-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC---------CCC-eE
Q 017726 21 PDQVIRAMNRNNED--YRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS---------PGD-RI 87 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~---------~gd-~v 87 (367)
.+.+.+++.+.... +.+ ....+...++.+.++++++.+ .+.+++||++|+..++..... +++ .|
T Consensus 93 ~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~L~~~~~~~---~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~i 169 (474)
T PLN02624 93 HPKIIKALTEQAEKLTLSSRAFYNDKFPEFAEYLTSMFGYD---MVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAII 169 (474)
T ss_pred CHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHhhcCCC---eEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEE
Confidence 66677777664432 111 123456678889999988642 589999999999998863211 133 46
Q ss_pred EEEeCCcchHHHHHHHHHhC------------CceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc
Q 017726 88 ISFLIGQFSLLWIDQQQRLN------------FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN 155 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~ 155 (367)
+.....|++.....+.. .+ ..+..++. -|++.+++.++... +++++|++..++|++|.+.|
T Consensus 170 i~~~~~yHG~t~~~~s~-~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~-~~iaaiiiEpv~~~~G~v~p 242 (474)
T PLN02624 170 VSCCGCFHGRTLAAISM-SCDNEATRGFGPLLPGHLKVDF-----GDLDALEKIFEEDG-DRIAAFLFEPIQGEAGVVIP 242 (474)
T ss_pred EEECCCcCCCCHHHhhc-CCCccccccCCCCCCCceEeCC-----CCHHHHHHHHHhCC-CCEEEEEECCccCCCCCcCC
Confidence 66666666642211111 11 01222322 16899999887544 57899999999999999987
Q ss_pred ----HHHHHHHHHhcCCCcEEEEeeeeccCc-----eeeccccccceEEEecCCCcccCC-CcceeeeeCHHHHHHhccC
Q 017726 156 ----LSKVRKLLDEYRHPALFLVDGVSSICA-----IDFRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTA 225 (367)
Q Consensus 156 ----~~~i~~~~~~~~~~~~vi~D~~~~~~~-----~~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~~~ 225 (367)
+++|.++|++ ||+++|+|++|.... ...+......|+++. +|.++++ ..+|.++.++++++.+...
T Consensus 243 ~~~~L~~l~~lc~~--~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~l--sK~lggG~~pigav~~~~~i~~~~~~~ 318 (474)
T PLN02624 243 PDGYLKAVRELCSK--HNVLMIADEIQTGLARTGKMLACDWEEVRPDVVIL--GKALGGGVIPVSAVLADKDVMLCIKPG 318 (474)
T ss_pred CHHHHHHHHHHHHH--cCCEEEEeccccCcCcCcchhhHHhcCCCCCEEEe--cccccCCCCcceeeeecHHHHhHhccC
Confidence 8999999999 999999999987321 112223345677776 5888654 3478899988877665432
Q ss_pred CCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcC--Cc-cccCCCc
Q 017726 226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG--LK-NCTQKEE 302 (367)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g--~~-~~~~~~~ 302 (367)
. .+. .+..+...+++..++++.+.+++ +.++..++.+++++.|+++. ++ .+..-.
T Consensus 319 ~----------------~~~--T~~g~pl~~aaa~aaLe~l~~~~---l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vr- 376 (474)
T PLN02624 319 E----------------HGS--TFGGNPLASAVAMAALQVVQDEK---LAERSAKLGQELRDQLQKIQKQFPKLIKEVR- 376 (474)
T ss_pred C----------------cCC--CCCCCHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHHHHHHHHHHhCCCceEEEE-
Confidence 1 111 22356666777777888776654 34466677778887777752 22 111100
Q ss_pred cCCCceEEEEcCCC----CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 303 WFSDTVTAVIVPSH----INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 303 ~~~~~~~~~~~~~~----~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
..+.++.+.+.+. ....++++.|.+ .||.+.++ .+..+||++....+++++.
T Consensus 377 -g~G~~~~i~l~~~~~~~~~a~~~~~~L~e-~GV~v~p~----~~~~lR~~p~l~~t~e~id 432 (474)
T PLN02624 377 -GRGLLNAVVLNSPKLGPVSAYDVCLKLKE-RGLLAKPT----HDTIIRLAPPLSISEDELQ 432 (474)
T ss_pred -eeEEEEEEEecCCCcChHHHHHHHHHHHh-CCeEEecC----CCCEEEEECCccCCHHHHH
Confidence 1223444444221 124578888865 59999765 2467999976666655443
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-18 Score=146.25 Aligned_cols=277 Identities=16% Similarity=0.116 Sum_probs=169.8
Q ss_pred HHHHHHHccCCCC------CCCCcHH-HHHHHHHHHHHHHhcCCCCceEEe--cCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 22 DQVIRAMNRNNED------YRSPAVP-ALTKTLLEDIKKIFKTTSGTPFLI--PTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 22 ~~v~~a~~~~~~~------~~~~~~~-~~~~~~~~~la~~~~~~~~~~v~~--~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
..|++|+++.-.. ..+|++. ...+.+.+-.|+.+|.+++ ++= --|||+|+..++.+++.|||+++....
T Consensus 27 ~KVL~Af~~~~vs~~hf~~tTGYGY~D~GRd~le~iyA~vfgaE~A--LVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG 104 (403)
T PF06838_consen 27 LKVLKAFQENRVSDSHFAGTTGYGYDDIGRDKLERIYADVFGAEDA--LVRPQFVSGTHAIALALFGVLRPGDELLSITG 104 (403)
T ss_dssp HHHHHHHHHTT--GGGCS---TT-TT-HHHHHHHHHHHHHCT-SEE--EEETTS-SHHHHHHHHHHHH--TT-EEEESSS
T ss_pred HHHHHHHHHcCCChhhcCCCCcCCCCCccHHHHHHHHHHHhCchhh--hhcccccchHHHHHHHHHhcCCCCCeEEEcCC
Confidence 4688888885322 2245543 4577888889999998853 221 136899999999999999999987544
Q ss_pred C-cchHH-HH-------HHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc-------cccH
Q 017726 93 G-QFSLL-WI-------DQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV-------TNNL 156 (367)
Q Consensus 93 ~-~~~~~-~~-------~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~-------~~~~ 156 (367)
. |-... .. .-++..|+++..|++.+++.+|.|.++++++ +++|+|++.- +.|. +.++
T Consensus 105 ~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~----~~tk~v~IQR---SrGYs~R~sl~i~~I 177 (403)
T PF06838_consen 105 KPYDTLEEVIGIRGNGPGSLKEFGIKYREVPLTEDGTIDWEAIKKALK----PNTKMVLIQR---SRGYSWRPSLTIEEI 177 (403)
T ss_dssp S--CCHHHHHTSSSSSSSSTGGGT-EEEE--B-TTSSB-HHHHHHHHH----TTEEEEEEE----S-TTSSS----HHHH
T ss_pred CchhhHHHHhCCCCCCCCChHHhCceeEEEeecCCCCcCHHHHHHhhc----cCceEEEEec---CCCCCCCCCCCHHHH
Confidence 2 22221 10 0124468999999999999999999999999 4779998863 2443 3357
Q ss_pred HHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCC--CcceeeeeCHHHHHHhccCCC-Cceeec
Q 017726 157 SKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLP--TGMGIVCASPKALEASKTAKS-VRVFFD 233 (367)
Q Consensus 157 ~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~--~g~g~~~~~~~~~~~~~~~~~-~~~~~~ 233 (367)
+++.+++|+.+++++++||.||+-+.......+.|+|++.+|+-|..+|. +..||++++++++++...... ++..
T Consensus 178 ~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~a~RLTaPGiG-- 255 (403)
T PF06838_consen 178 KEIIKFVKEINPDVIIFVDNCYGEFVETQEPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERAAYRLTAPGIG-- 255 (403)
T ss_dssp HHHHHHHHHH-TTSEEEEE-TTTTTTSSS-GGGGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHHHHHHS-TTTG--
T ss_pred HHHHHHHHhhCCCeEEEEeCCcceeccccCccccchhheeccceeCCCCCccCcCCEEechHHHHHHHHhhhcCCccc--
Confidence 77778888877899999999999888777777789999999999998763 224999999999998764432 1111
Q ss_pred hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEc
Q 017726 234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIV 313 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 313 (367)
-+.|. |.... -.+...+-+ -.++.....+-+......++++|+++.+...+.++..+..+.+
T Consensus 256 -------~e~G~----t~~~~--R~~~QGlFl-----AP~vV~eAlKgaif~A~~fe~lG~~v~P~~~~~R~DiIQai~l 317 (403)
T PF06838_consen 256 -------KEVGA----TLGTN--RLMFQGLFL-----APHVVGEALKGAIFAAALFEKLGFEVSPKPDDPRSDIIQAIEL 317 (403)
T ss_dssp -------GGSS------TTTH--HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTT-EEES-TTS--SSS-EEEE-
T ss_pred -------ccccc----CcchH--HHHHhHHhh-----chHHHHHHHHHHHHHHHHHHHcCCcCCCCCCCCCCceEEEEEC
Confidence 12222 11110 111222222 1344555566677777778889999988776778888889988
Q ss_pred CCCCCHHHHHHHHH
Q 017726 314 PSHINSSEIVRRAW 327 (367)
Q Consensus 314 ~~~~~~~~l~~~L~ 327 (367)
.+...-..||+.+.
T Consensus 318 ~~~e~l~~FC~~iQ 331 (403)
T PF06838_consen 318 GSPEKLIAFCQGIQ 331 (403)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 42222335666664
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.9e-17 Score=142.53 Aligned_cols=314 Identities=18% Similarity=0.170 Sum_probs=209.5
Q ss_pred CCCCCcccccC-CC-----CCChHHHHHHHccCCCC--CCCCc-HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHH
Q 017726 5 YAPGKNHLFVP-GP-----VHIPDQVIRAMNRNNED--YRSPA-VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWES 75 (367)
Q Consensus 5 ~~~~~~~~~~~-~p-----~~~~~~v~~a~~~~~~~--~~~~~-~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~ 75 (367)
+..++.|++.- |- ..-++.+.++++++... |.+.. ..+...++.+.|.+..+ . .+.|.|+|||+||++.
T Consensus 38 D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~~~~~~~~~la~~L~~~s~-~-~d~vff~NSGaEA~Ea 115 (404)
T COG4992 38 DQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLFYNEPQAELAEKLVELSP-F-ADRVFFCNSGAEANEA 115 (404)
T ss_pred CCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHhhCc-c-ccEEEEcCCcHHHHHH
Confidence 44555555533 32 24478888888886543 22322 23556678788887776 2 4569999999999999
Q ss_pred HHHcc---CC-C-CCeEEEEeCCcchHHHHHHHHH------hCC-----ceEEEeCCCCCCCCHHHHHHHHhccCCCCcc
Q 017726 76 ALTNT---LS-P-GDRIISFLIGQFSLLWIDQQQR------LNF-----NVDVVESDWGEGAKLDVLASKLAADTAHTIK 139 (367)
Q Consensus 76 ~~~~~---~~-~-gd~vl~~~~~~~~~~~~~~~~~------~g~-----~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~ 139 (367)
++... .. + ..+|+....++++-.+..++.. .++ .+..+|.+ |++++++++++ .|.
T Consensus 116 AiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfn-----Di~al~~ai~~----~ta 186 (404)
T COG4992 116 ALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFN-----DIEALEAAIDE----DTA 186 (404)
T ss_pred HHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCC-----CHHHHHHHhcc----CeE
Confidence 98642 21 2 3478877777766322111110 111 12333333 89999999995 569
Q ss_pred EEEEEecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCCcce
Q 017726 140 AICIVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPTGMG 210 (367)
Q Consensus 140 lv~~~~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~g 210 (367)
+|++...+--.|.+.+ +++++++|++ ||+++|.||.|...... ........||++. .|.++|...+|
T Consensus 187 AvivEPIQGEgGV~~~~~~fl~~lr~lCd~--~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~tl--aK~LgGG~Pig 262 (404)
T COG4992 187 AVIVEPIQGEGGVIPAPPEFLKALRELCDE--HGALLILDEVQTGLGRTGKLFAYEHYGVEPDILTL--AKALGGGFPIG 262 (404)
T ss_pred EEEEecccCCCCCCCCCHHHHHHHHHHHHH--hCeEEEEeccccCCCccchHHHHHHhCCCCCEEEe--eccccCCccce
Confidence 9999999999998876 7789999999 99999999999754432 2333345687766 69998877789
Q ss_pred eeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Q 017726 211 IVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVE 290 (367)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~ 290 (367)
.++.++...+.+.+..+ |+ .+.-|.+++++..++++.+.+++ ..++.++..++|.+.|+
T Consensus 263 A~la~~~~~~~~~~G~H----------------gS--TfGGNpLacAv~~a~l~~l~~e~---ll~~v~~~g~~~~~~L~ 321 (404)
T COG4992 263 AMLATEEIASAFTPGDH----------------GS--TFGGNPLACAVALAVLEVLLEEG---LLENVREKGEYLLQRLR 321 (404)
T ss_pred eeEEchhhhhcCCCCcc----------------cC--CCCcCHHHHHHHHHHHHHHcchh---HHHHHHHHHHHHHHHHH
Confidence 99988555554444322 22 44577878888888899888875 44467788889999998
Q ss_pred Hc--CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHH
Q 017726 291 AW--GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNF 361 (367)
Q Consensus 291 ~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~ 361 (367)
++ .+.++..-. -.+.++-+.+.....+.++++.+.++ |+.+... .++.+|+.+-..++++++..
T Consensus 322 ~l~~~~~~v~~vR--G~GLmiGiel~~~~~a~~~~~~~~~~-gvL~~~a----~~~ViR~~PpL~i~~eei~~ 387 (404)
T COG4992 322 ELKRRYPLVKEVR--GRGLMIGIELKEPYRARDIVRALREE-GVLVLPA----GPNVIRFLPPLVITEEEIDE 387 (404)
T ss_pred HHhhcCCceeeee--cceeEEEEEecCcccHHHHHHHHHHC-CeEEecC----CCCeEEecCCccCCHHHHHH
Confidence 86 344333211 23446666663333478999999765 9887642 23589999877777665543
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-17 Score=152.47 Aligned_cols=309 Identities=15% Similarity=0.087 Sum_probs=184.9
Q ss_pred ChHHHHHHHccCCCCCC-CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCcch
Q 017726 20 IPDQVIRAMNRNNEDYR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQFS 96 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~~~ 96 (367)
.++.+.+++.++..... .........+++++|++++... +.+++++||++|+..+++.. ...+++|++..++|++
T Consensus 65 ~~p~v~~ai~~q~~~~~~~~~~~~~~~~lae~l~~~~~~~--~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG 142 (423)
T TIGR00713 65 AHPRVVEAVKEALERGTSYGAPTEAEILLAKEIISRVPSV--EMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHG 142 (423)
T ss_pred CCHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHHHhCCcc--cEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCC
Confidence 35666766666543211 1223356678999999987643 36999999999999988742 2356899999998888
Q ss_pred HHHHHHHH-HhCCc-----------------eEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---
Q 017726 97 LLWIDQQQ-RLNFN-----------------VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN--- 155 (367)
Q Consensus 97 ~~~~~~~~-~~g~~-----------------~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~--- 155 (367)
......+. ..+.. ...++. .|++++++++++.. +++++|++....+.+|.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~-~~~aavi~ep~~~~~G~~~~~~~ 216 (423)
T TIGR00713 143 HHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPY-----NDLEALEEVFEEYG-EEIAGVIVEPVAGNMGVVPPKPE 216 (423)
T ss_pred ChhhhhccccCcccccCCCCCCCCCcccccceEEeCC-----CCHHHHHHHHHHcC-CcEEEEEEeCCCCCCCCcCCCHH
Confidence 53111110 01100 111111 27899999997543 46788888644444898876
Q ss_pred -HHHHHHHHHhcCCCcEEEEeeeeccCce--e--eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCce
Q 017726 156 -LSKVRKLLDEYRHPALFLVDGVSSICAI--D--FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV 230 (367)
Q Consensus 156 -~~~i~~~~~~~~~~~~vi~D~~~~~~~~--~--~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~ 230 (367)
+++|.++|++ +|+++|+|++|..... . ........|++ +++|.+++...+|++++++++++.+.... ..
T Consensus 217 ~l~~l~~l~~~--~~~llI~DEv~~g~r~g~~~~~~~~~~~pDi~--t~sK~l~~G~pig~v~~~~~i~~~~~~~~--~~ 290 (423)
T TIGR00713 217 FLAGLRALTEE--YGSLLIFDEVMTGFRVALGGAQEYFGVEPDLT--TLGKIIGGGLPVGAFGGRREIMERLAPEG--PV 290 (423)
T ss_pred HHHHHHHHHHH--hCCEEEEEccccccccCcchhHHHhCCCcchh--hhhhhhcCCCceeeeeEHHHHHHhhCcCC--Ce
Confidence 6889999999 9999999999864321 1 11112235654 57899975444799999999988775311 00
Q ss_pred eechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceE
Q 017726 231 FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVT 309 (367)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~ 309 (367)
.. ++ .+..+...+++..++++.+.+.+ ++...+....+.+.+.+.+++.++...... .+ .++
T Consensus 291 ~~-----------~~--T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~---~g-~~~ 353 (423)
T TIGR00713 291 YQ-----------AG--TLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVNR---VG-SMF 353 (423)
T ss_pred ee-----------cc--CCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe---ec-cEE
Confidence 00 11 33466666677777888877654 445555555566666666666654432211 12 234
Q ss_pred EEEcC-CC---------CC---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhh
Q 017726 310 AVIVP-SH---------IN---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 310 ~~~~~-~~---------~~---~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
.+.+. +. .+ ...+++.|.+ +||.+.++. .+.+|+++....++.+...++|
T Consensus 354 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~----~~~~~l~~~~t~~~i~~~~~~l 416 (423)
T TIGR00713 354 SLFFTEEEVTNYADAKKSDTELFAKFFHEMLD-KGVFLPPSQ----FEACFLSAAHTEEDIENTIEAA 416 (423)
T ss_pred EEEEecCCCCChhhhhcccHHHHHHHHHHHHH-CCeEEecCC----ccceeeECCCCHHHHHHHHHHH
Confidence 33331 11 11 1257778875 599986531 1347887653333334333333
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9e-17 Score=148.40 Aligned_cols=277 Identities=14% Similarity=0.063 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC--------CCCCeEEEEeCCcchHHHHHHHHHhCCceEE-
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--------SPGDRIISFLIGQFSLLWIDQQQRLNFNVDV- 112 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~- 112 (367)
+...++.++++++.+. +.+.+++||++|+..++.... .++.+|+....+|++... ......+.+...
T Consensus 81 ~~~~~la~~l~~~~~~---~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~-~~~~~~~~~~~~~ 156 (406)
T PRK12381 81 EPVLRLAKKLIDATFA---DRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTL-FTVSAGGQPKYSQ 156 (406)
T ss_pred HHHHHHHHHHHhhCCC---CeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcch-hHHhhcCCccccc
Confidence 4456888888888753 359999999999999887531 245678888888888643 112222211000
Q ss_pred --EeCCC----CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc-----cHHHHHHHHHhcCCCcEEEEeeeeccC
Q 017726 113 --VESDW----GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN-----NLSKVRKLLDEYRHPALFLVDGVSSIC 181 (367)
Q Consensus 113 --v~~~~----~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~-----~~~~i~~~~~~~~~~~~vi~D~~~~~~ 181 (367)
.+..+ ....|++++++.++ +++++|++. |.+++|-+. .+++|+++|++ ||+++|+|++|...
T Consensus 157 ~~~~~~~~~~~~~~~d~~~l~~~l~----~~~aaviiE-Pv~~~gg~~~~~~~~l~~l~~l~~~--~~~llI~DEv~tG~ 229 (406)
T PRK12381 157 DFAPLPPDIRHAAYNDLNSASALID----DQTCAVIVE-PIQGEGGVIPADKAFLQGLRELCDR--HNALLIFDEVQTGV 229 (406)
T ss_pred CCCCCCCCeeEeCCCCHHHHHHhcc----CCeeEEEEe-CCcCCCCCcCCCHHHHHHHHHHHHH--cCCEEEEcchhhCC
Confidence 01000 01137899999886 356788775 677777543 37889999999 99999999998532
Q ss_pred cee---e--ccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHH
Q 017726 182 AID---F--RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLL 256 (367)
Q Consensus 182 ~~~---~--~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (367)
... + .......|+ .+++|.+++...+|++++++++++.+..... +. .+..+...+
T Consensus 230 gr~G~~~~~~~~~v~pDi--~t~sK~l~gG~~ig~~~~~~~~~~~~~~~~~----------------~~--t~~~~pl~~ 289 (406)
T PRK12381 230 GRTGELYAYMHYGVTPDV--LTTAKALGGGFPIGAMLTTEKCASVMTVGTH----------------GT--TYGGNPLAS 289 (406)
T ss_pred CCCcchhhhHhhCCCCCE--EEehhhhhCCCceEEEEEcHHHHhhcCCCCC----------------CC--CCCCCHHHH
Confidence 211 1 111223565 4668999655557999999998877653211 11 234566666
Q ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcC--CccccCCCccCCCceEEEEcCCCC--CHHHHHHHHHhhCCe
Q 017726 257 YGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG--LKNCTQKEEWFSDTVTAVIVPSHI--NSSEIVRRAWQRYNL 332 (367)
Q Consensus 257 ~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~L~~~~gv 332 (367)
++..++++.+.+. +++++.+++.+++.+.|++++ +.+...-. -.+.++.+.+++.. ....+.+.|.+ +||
T Consensus 290 aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vr--g~Gl~~~~~l~~~~~~~~~~~~~~l~~-~Gv 363 (406)
T PRK12381 290 AVAGKVLELINTP---EMLNGVKQRHDWFVERLNTINARYGLFSEIR--GLGLLIGCVLNAEYAGKAKQISQEAAK-AGV 363 (406)
T ss_pred HHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHhhCCCEEEEe--cCeEEEEEEecCchhhHHHHHHHHHHH-CCc
Confidence 7777778777544 456788889999999998863 33222110 13445666664322 34677787865 499
Q ss_pred EEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 333 SLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 333 ~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
.+.+. ..+.+|+++....+++++
T Consensus 364 ~v~~~----g~~~lRl~p~~~~t~~~i 386 (406)
T PRK12381 364 MVLIA----GPNVVRFAPALNISEEEI 386 (406)
T ss_pred EEeeC----CCCEEEEeCCccCCHHHH
Confidence 98643 235899987665665543
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-16 Score=148.58 Aligned_cols=288 Identities=17% Similarity=0.140 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC--------CCCCeEEEEeCCcchHHHHHHHHHhC------
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--------SPGDRIISFLIGQFSLLWIDQQQRLN------ 107 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g------ 107 (367)
+...++.+.|.+.+... .+.+.|++||++|++.++.... ....+|+....+|++....... ..+
T Consensus 85 ~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls-~~~~~~~~~ 162 (423)
T PRK05964 85 EPAERLAQRLVALTPGG-LDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMS-VGDRGGMHA 162 (423)
T ss_pred HHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHh-cCCCccccc
Confidence 44567778888776422 2359999999999999886421 1235788888888885421111 111
Q ss_pred ------CceEEEeCCCCC--CCCHHHHHHHHhccCCCCccEEEEEe-cCCCcccccc----HHHHHHHHHhcCCCcEEEE
Q 017726 108 ------FNVDVVESDWGE--GAKLDVLASKLAADTAHTIKAICIVH-NETATGVTNN----LSKVRKLLDEYRHPALFLV 174 (367)
Q Consensus 108 ------~~~~~v~~~~~~--~~d~e~l~~~i~~~~~~~~~lv~~~~-~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~ 174 (367)
..+..++.+... ..+++.+++.+.++. +++.+|++.. .++..|...+ +++|.++|++ ||+++|+
T Consensus 163 ~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~-~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~--~g~llI~ 239 (423)
T PRK05964 163 LYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHA-GEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDR--HGVLLIF 239 (423)
T ss_pred cccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCC-CcEEEEEEecccccCCCcccCCHHHHHHHHHHHHH--cCCEEEE
Confidence 112333333211 112788888887544 4677888776 5777887764 8899999999 9999999
Q ss_pred eeeeccCce-----eeccccccceEEEecCCCcccCC-CcceeeeeCHHHHHHhccCC-CCceeechHHHHHHhhcCCcc
Q 017726 175 DGVSSICAI-----DFRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAK-SVRVFFDWKDYIKFYNLGTFW 247 (367)
Q Consensus 175 D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 247 (367)
|+++..... ........+|+++. +|+++|+ ..+|+++.++++.+.+.... .... + .++
T Consensus 240 DEv~tg~gr~G~~~a~~~~~v~pDi~~~--~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~----------~-~~~-- 304 (423)
T PRK05964 240 DEIATGFGRTGTLFACEQAGVSPDIMCL--SKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAF----------M-HSP-- 304 (423)
T ss_pred echhhCCCcCcchhHHHhcCCCCCeeee--ehhhhcCcccceEEEEcHHHHHhhhcCCccccc----------c-cCC--
Confidence 999863221 11222234677654 6999765 45789999999988774310 0000 0 011
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCC---CHHHHH
Q 017726 248 PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHI---NSSEIV 323 (367)
Q Consensus 248 ~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ 323 (367)
.++.+...+++..++++.+.+++ ..++..++.+++.+.|+++ +++.+..-. ..+.++.+.+.+.. ....+.
T Consensus 305 T~~~np~~~aaa~a~l~~l~~~~---~~~~~~~~g~~l~~~l~~l~~~~~i~~vr--g~Gl~~~i~l~~~~~~~~~~~l~ 379 (423)
T PRK05964 305 SYTANPLACAAANASLDLFEDEP---VLERVAALSAGLAEGLEPFRDLPGVADVR--VLGAIGAVELDRPVLERDGPALR 379 (423)
T ss_pred CCCcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhhccCCCeEEee--cccEEEEEEeccCcchhHHHHHH
Confidence 23467777788888888887654 4567788888898888876 444332111 23345566663321 255788
Q ss_pred HHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 324 RRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 324 ~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
+.|.+ +||.+.+. ++.+|+++...++++|++
T Consensus 380 ~~l~~-~Gv~v~~~-----~~~lR~~p~l~~t~edId 410 (423)
T PRK05964 380 AFALE-RGVLLRPL-----GNTIYLMPPYIITAEELD 410 (423)
T ss_pred HHHHH-CCeEEEec-----CCEEEEeCCcccCHHHHH
Confidence 88865 49998752 257999988666655443
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-17 Score=143.14 Aligned_cols=320 Identities=15% Similarity=0.193 Sum_probs=212.3
Q ss_pred ccccCCCCCChHHHHHHHccCCCCCC----CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCe
Q 017726 11 HLFVPGPVHIPDQVIRAMNRNNEDYR----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR 86 (367)
Q Consensus 11 ~~~~~~p~~~~~~v~~a~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~ 86 (367)
.-|.-+..+..+.+.+++..+....- .-+-.....++++..|+++|.++ .++|..| -..+...+.+++.||.-
T Consensus 147 LGFa~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g~e~--a~vF~mG-f~TNs~~~p~l~~~gsL 223 (519)
T KOG1357|consen 147 LGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLGVED--AIVFSMG-FATNSMNIPSLLGKGSL 223 (519)
T ss_pred ccccccCCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhcCCcc--eEEEecc-ccccccCcceeecCCcc
Confidence 34555677788889999998765311 12335778899999999999988 4566544 44555557778899988
Q ss_pred EEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcc---CCCCc-----cEE-EEEecCCCccccccHH
Q 017726 87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAAD---TAHTI-----KAI-CIVHNETATGVTNNLS 157 (367)
Q Consensus 87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~---~~~~~-----~lv-~~~~~~n~tG~~~~~~ 157 (367)
|+.....|.|.+ .-++..|+.++....+ |.++||+++.+. ..++| |++ +.....+.-|.+.++.
T Consensus 224 IiSDelNHaSi~--~GaRLSgAtiRVfkHN-----dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp 296 (519)
T KOG1357|consen 224 IISDELNHASLI--TGARLSGATTRVFRHN-----DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLP 296 (519)
T ss_pred eeeccccchhee--ccccccCceEEEEecC-----CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccH
Confidence 887777666654 3478889999988876 788888888872 11222 344 4445556889999999
Q ss_pred HHHHHHHhcCCCcEEEEeeeeccCceee---------ccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCC
Q 017726 158 KVRKLLDEYRHPALFLVDGVSSICAIDF---------RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV 228 (367)
Q Consensus 158 ~i~~~~~~~~~~~~vi~D~~~~~~~~~~---------~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~ 228 (367)
++.+++|+ +.++++.|++|+.|++.- .++...+|++.+.+.|.++ ..| |++.+++++++.+......
T Consensus 297 ~vvalkkk--ykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfg-a~G-Gyiagsk~lid~lrt~s~~ 372 (519)
T KOG1357|consen 297 EVVALKKK--YKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFG-AAG-GYIAGSKELIDYLRTPSPS 372 (519)
T ss_pred HHHHhhcc--ccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhcc-ccc-ceecCcHHHHhhhccCCCc
Confidence 99999999 999999999999887631 2223357999999999884 555 9999999998877653222
Q ss_pred ceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHH-hC---hHHHHHHHHHHHHHHHHHHHHcCCccccCCCccC
Q 017726 229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFE-EG---LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWF 304 (367)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~-~g---~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 304 (367)
..+- + ..++++ +.-...++..+.. .| .++..+++.+|+.+++..|+++|+.++..+++
T Consensus 373 ~~ya------------t--~~sppv--aqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~gfivyG~~dS-- 434 (519)
T KOG1357|consen 373 ALYA------------T--SLSPPV--AQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMGFIVYGNNDS-- 434 (519)
T ss_pred eeec------------c--cCChHH--HHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcCcEEEecCCCC--
Confidence 1111 1 112222 2223335555542 22 67788999999999999999999999987432
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhhCCeEEc-cCCC--CCCCcEEEEeecCCCCHH--HHHHhhhh
Q 017726 305 SDTVTAVIVPSHINSSEIVRRAWQRYNLSLG-LGLN--KVAGKVFRIGHLGHLNEV--MFNFQLLF 365 (367)
Q Consensus 305 ~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~-~g~~--~~~~~~iRi~~~~~~~~~--~~~~~~l~ 365 (367)
.++.+.+--......+.+.|+++ ++.+. -|+. +.-....|++....+..+ |..++.++
T Consensus 435 --pVvplll~~~~k~~~f~r~~l~~-nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~ 497 (519)
T KOG1357|consen 435 --PVVPLLLYGPAKIVAFSREMLER-NIGVVVVGFPATPLLESRARFCLSASHTKEDLDRALEVID 497 (519)
T ss_pred --CcceeeecCcccccHHHHHHHhc-CceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHh
Confidence 22322221122345777777655 54443 3443 333456788766655444 44444433
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-16 Score=151.76 Aligned_cols=313 Identities=13% Similarity=0.047 Sum_probs=209.4
Q ss_pred CCChHHHHHHHccCCC--C---CCC----CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc---CCCCC
Q 017726 18 VHIPDQVIRAMNRNNE--D---YRS----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT---LSPGD 85 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~--~---~~~----~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~---~~~gd 85 (367)
..+|+.+.+.+.+... . ... .+..+..-+++++++++.|.+-.+ .-+..++|.+-++++.+. ..+++
T Consensus 76 ~~~p~~i~r~v~~~p~~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLtGm~~aN-aSl~d~atA~aEa~~~a~~~~~~~~~ 154 (939)
T TIGR00461 76 TILPPVIQRNLLENPGWYTAYTPYQPEISQGRLEALLNFQTVVSDLTGLPVAN-ASLLDEGTAAAEAMALSFNVSKKKAN 154 (939)
T ss_pred CcCChHHHHHHHhCchhhhcCCCCChhhhhHHHHHHHHHHHHHHHHHCCChhh-hhccchhhHHHHHHHHHHHhhcCCCC
Confidence 4557777755555321 1 122 234455778899999999998543 345577776666555442 22347
Q ss_pred eEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHH
Q 017726 86 RIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLL 163 (367)
Q Consensus 86 ~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~ 163 (367)
+|++++..|+... +...++..|++++.++ ++++++.++ +..+++. ..|..|.+.|+++|.+++
T Consensus 155 ~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~--------~~~l~~~~~------~~~v~~q-~Pn~~G~ied~~~i~~~~ 219 (939)
T TIGR00461 155 KFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD--------CSDIKKAVD------VFGCLLQ-YPATDGSILDYKQLIDAL 219 (939)
T ss_pred EEEECCCCCcchHHHHHHHHHhcCcEEEEEc--------HHHHhhcCC------EEEEEEE-CCCCCeEEecHHHHHHHH
Confidence 8999988888765 4456788899988874 445555442 3444444 457899999999999999
Q ss_pred HhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCccc----CCCcceeeeeCHHHHHHhccCCCC---------ce
Q 017726 164 DEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALS----LPTGMGIVCASPKALEASKTAKSV---------RV 230 (367)
Q Consensus 164 ~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~----g~~g~g~~~~~~~~~~~~~~~~~~---------~~ 230 (367)
|+ +|++++++..........++.++|+||++++.+++.. |.++.|++++++++++++.....+ .+
T Consensus 220 h~--~gal~~~~ad~~al~ll~~Pge~GaDi~vg~~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~ 297 (939)
T TIGR00461 220 HS--HKSLVSVAADLMALTLLTPPGHYGADIVLGSSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTAL 297 (939)
T ss_pred HH--cCCEEEEEechHHhCCcCCHHHcCCcEEeeCCCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccc
Confidence 99 9999999776666666667778899999888776543 234479999999999888765542 01
Q ss_pred eechH--HHHHHhhcCCccCCCCcHHHHHHHHHH--HHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCC
Q 017726 231 FFDWK--DYIKFYNLGTFWPYTPSIQLLYGLRAA--LDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSD 306 (367)
Q Consensus 231 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~al~~a--l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 306 (367)
.+.++ ++..+.+..+ ++......+.++.++ +.++..+|++++.++...++.++.+.|++.|+++..+ .++.
T Consensus 298 ~l~LqtReqhIrRekAt--SNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~G~~~~~~--~fF~- 372 (939)
T TIGR00461 298 RLALQTREQHIRRDKAT--SNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLENDPHELINK--TWFD- 372 (939)
T ss_pred eeecccccccccccccC--cchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC--Cccc-
Confidence 11111 1223444443 222233333444445 4456778899999999999999999999999888765 2222
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 307 TVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
-+.+++ ...+.+++.+.+.++ ||.++.. .++.+++|+.-..+.+|+.
T Consensus 373 -~~~v~~-~~~~~~~i~~~~~~~-gi~l~~~----~~~~i~~s~~E~~t~~di~ 419 (939)
T TIGR00461 373 -TLTVKV-GNGISSELLKAAEEF-NINLRAV----DTTTVGIALDETTTKADVE 419 (939)
T ss_pred -eEEEEe-CCCCHHHHHHHHHHC-CCeeeec----CCCEEEEEeecCCCHHHHH
Confidence 244555 234678899999765 9987652 2357999987777766544
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.2e-16 Score=141.31 Aligned_cols=293 Identities=16% Similarity=0.103 Sum_probs=181.5
Q ss_pred hHHHHHHHccCCCC--CCC-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc---CC------C-----
Q 017726 21 PDQVIRAMNRNNED--YRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT---LS------P----- 83 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~---~~------~----- 83 (367)
++++.+++.++... +.. ........++.+.+.+..+ .+.+.|++||++|++.++... .. +
T Consensus 33 ~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~l~~~~~---~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~ 109 (382)
T PLN00144 33 DPDWVKAVAEQAGTLAHVSNVYHTIPQVELAKRLVASSF---ADRVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAAS 109 (382)
T ss_pred CHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHhcCC---CCeEEEeCCcHHHHHHHHHHHHHHHhccCCCCcccccc
Confidence 44555555554321 111 1113445567777776653 236999999999999988632 11 1
Q ss_pred -CCeEEEEeCCcchHHHHHHHHHhCCc------------eEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCc
Q 017726 84 -GDRIISFLIGQFSLLWIDQQQRLNFN------------VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETAT 150 (367)
Q Consensus 84 -gd~vl~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~t 150 (367)
..+|+....+|++....... ..+-. +..++. .|++.+++.+.. .++++|++...+||.
T Consensus 110 ~r~~ii~~~~~yHG~t~~~~s-~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~---~~~aavi~eP~q~~g 180 (382)
T PLN00144 110 SATEFVSFSNSFHGRTLGALA-LTSKEQYRTPFEPLMPGVTFVEY-----GNLEAARKLIQK---GKTAAVFVEPVQGEG 180 (382)
T ss_pred ccceEEEECCCcccccHHHHh-cCCCccccccCCCCCCCeEEeCC-----CCHHHHHHhcCC---CCeEEEEEccccCCC
Confidence 25788888888886422111 11110 122222 268999988853 467899888888996
Q ss_pred ccccc----HHHHHHHHHhcCCCcEEEEeeeeccCcee---e--ccccccceEEEecCCCcccCCCcceeeeeCHHHHHH
Q 017726 151 GVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAID---F--RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEA 221 (367)
Q Consensus 151 G~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~~---~--~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~ 221 (367)
|...+ +++++++|++ ||+++|+|++++..... + +......| +.+.+|.+++...+|++++++++.+.
T Consensus 181 g~~~~~~~~~~~l~~l~~~--~g~llI~DEv~tg~gr~g~~~~~~~~~~~PD--i~t~sK~l~~G~pig~v~~~~~~~~~ 256 (382)
T PLN00144 181 GIYPATKEFLQGLRALCDE--AGALLVFDEVQCGLGRTGYLWAHEAYGVEPD--IMTLAKPLAGGLPIGAVLVTEKVASA 256 (382)
T ss_pred CCccCCHHHHHHHHHHHHH--cCCEEEEechhhCCCccchHhhhhhcCCCCC--EEEecccccCCcceEEEEEcHHHHhc
Confidence 65542 7889999999 99999999998743221 1 12233467 45558999766668999999998877
Q ss_pred hccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccC
Q 017726 222 SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQ 299 (367)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~ 299 (367)
+..... .. .+..+...+++..++++++.+.++ .++..+..+++++.|++. ..+....
T Consensus 257 ~~~~~~---------------~~---T~~~~pl~~aaa~a~l~~i~~~~~---~~~~~~~g~~l~~~l~~~~~~~~~~~~ 315 (382)
T PLN00144 257 INPGDH---------------GS---TFAGGPLVCNAALAVLDKISKPGF---LASVAKKGEYLRELLRRKLGGNPHVKE 315 (382)
T ss_pred cCCCCC---------------CC---CCCCCHHHHHHHHHHHHHHhhchH---HHHHHHHHHHHHHHHHHHHhhCCCcee
Confidence 753211 11 334666666777778888876543 345555666666666553 2322221
Q ss_pred CCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHH
Q 017726 300 KEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~ 358 (367)
-. ..+.++++.+ + .+...+.+.+.+ .||.+.++.. ++.+|+++....++++
T Consensus 316 vr--g~G~~~~l~l-~-~~~~~~~~~~~~-~Gv~i~~~~~---~~~lrl~p~~~~~~~~ 366 (382)
T PLN00144 316 VR--GVGLLVGIQL-D-VPAGPLVDACRD-SGLLVLTAGK---GDVVRLVPPLVISEAE 366 (382)
T ss_pred ee--cCceEEEEEe-c-CccHHHHHHHHH-CCeEEeecCC---CCEEEEeCCCccCHHH
Confidence 11 2556777777 2 345788888865 4999987621 4789999766565544
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.1e-16 Score=147.07 Aligned_cols=242 Identities=12% Similarity=0.062 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC--
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG-- 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-- 118 (367)
.....+.++..|+.+|++. ...++||+|.++.+++.+.+.+||.||+..+.|=|.. ..++...|+.++++....+
T Consensus 173 eG~i~eAq~~AA~~fgAd~--tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~-hgaLiLsGa~PVYl~P~~n~~ 249 (720)
T PRK13578 173 EGAAKDAQKHAAKVFNADK--TYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNH-HGALIQAGATPVYLETARNPF 249 (720)
T ss_pred ChHHHHHHHHHHHHhCCCc--eEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHH-HHHHHHcCCeEEEeecccccc
Confidence 3557799999999999987 3588899999999999999999999999999877743 2246778999998865431
Q ss_pred ---CCCCH-----HHHHHHHhccCCC-----C-ccEEEEEecCCCccccccHHHHHHH-HHhcCCCcEEEEeeeeccCce
Q 017726 119 ---EGAKL-----DVLASKLAADTAH-----T-IKAICIVHNETATGVTNNLSKVRKL-LDEYRHPALFLVDGVSSICAI 183 (367)
Q Consensus 119 ---~~~d~-----e~l~~~i~~~~~~-----~-~~lv~~~~~~n~tG~~~~~~~i~~~-~~~~~~~~~vi~D~~~~~~~~ 183 (367)
+.++. +.++++|++++.. + .+++++++| |..|.+++++.|.+. ++. ++ +|++|+||+.-..
T Consensus 250 Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~p-TYdG~~ydi~~I~~~~~h~--~~-~llvDEAhgah~~ 325 (720)
T PRK13578 250 GFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLG-TYDGTIYNARQVVDKIGHL--CD-YILFDSAWVGYEQ 325 (720)
T ss_pred CCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECC-CCcceeecHHHHHHHhhcc--CC-cEEEeCcchhhhc
Confidence 23454 4599999876211 2 478888876 789999999999998 677 77 9999999864221
Q ss_pred e------e--ccccccce----EEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCC
Q 017726 184 D------F--RMDEWGID----VALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTP 251 (367)
Q Consensus 184 ~------~--~~~~~~~d----~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (367)
. + ...+.|+| +++-|.||.+++....+++-++.+.++. ...+.+...+...+..- ...+|
T Consensus 326 F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~i~g------~~~~v~~~r~~~al~m~--qSTSP 397 (720)
T PRK13578 326 FIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKG------QARYCPHKRLNNAFMLH--ASTSP 397 (720)
T ss_pred cCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCccccc------ccccCCHHHHHHHHHHH--cCCCh
Confidence 1 1 11245788 9999999999887777777776554220 00112222222222211 13368
Q ss_pred cHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH-HHc-CCccc
Q 017726 252 SIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAV-EAW-GLKNC 297 (367)
Q Consensus 252 ~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L-~~~-g~~~~ 297 (367)
+...++++..+.+.+....-++..++..+++..+++.| +.. ++.+.
T Consensus 398 sY~LmASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~~ 445 (720)
T PRK13578 398 FYPLFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLIRPF 445 (720)
T ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeeec
Confidence 88888899988888876323667778888888888888 544 66655
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-15 Score=140.71 Aligned_cols=309 Identities=17% Similarity=0.108 Sum_probs=185.2
Q ss_pred hHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCc
Q 017726 21 PDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQ 94 (367)
Q Consensus 21 ~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~ 94 (367)
++++.+++.+.... ..+....+...++.++|++++.-. .+.+.|++||++|+..++... .....+|+....+|
T Consensus 61 ~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~~~~-~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~y 139 (433)
T PRK08117 61 HPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEITPGG-LDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCF 139 (433)
T ss_pred CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCc
Confidence 45566666554322 111123355678888888887322 236899999999999988742 22345788888878
Q ss_pred chHHHHHHHHHh-------C-----CceEEEeCCCCCC------------CCHHHHHHHHhcc-CCCCccEEEEEecCCC
Q 017726 95 FSLLWIDQQQRL-------N-----FNVDVVESDWGEG------------AKLDVLASKLAAD-TAHTIKAICIVHNETA 149 (367)
Q Consensus 95 ~~~~~~~~~~~~-------g-----~~~~~v~~~~~~~------------~d~e~l~~~i~~~-~~~~~~lv~~~~~~n~ 149 (367)
++.....+.... + ..+..+|.+.... .+++++++.++.. ...++.+|++......
T Consensus 140 HG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~ 219 (433)
T PRK08117 140 HGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGE 219 (433)
T ss_pred CCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCC
Confidence 775322111100 0 0123343332111 1456677776531 1146788899988888
Q ss_pred cccccc----HHHHHHHHHhcCCCcEEEEeeeeccCcee---ecccc--ccceEEEecCCCcccCCCcceeeeeCHHHHH
Q 017726 150 TGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAID---FRMDE--WGIDVALTGSQKALSLPTGMGIVCASPKALE 220 (367)
Q Consensus 150 tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~~---~~~~~--~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~ 220 (367)
.|.+.| +++++++|++ ||+++|+|++|+..... +.... ...|+ .+++|.+++...+|++++++++.+
T Consensus 220 ~G~~~~~~~~l~~l~~lc~~--~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi--~t~sK~lg~G~pigav~~~~~i~~ 295 (433)
T PRK08117 220 GGYIVPPKSFLKKLREICDR--HGILLIFDEVQTGFGRTGEWFAAQTFGVVPDI--MTIAKGIASGLPLSAVVASKELME 295 (433)
T ss_pred CCCccCCHHHHHHHHHHHHH--cCCEEEEecchhccCccccchhHhhcCCCCCE--eehhhhccCCCcceeEEEcHHHHh
Confidence 899988 9999999999 99999999998743221 11111 22455 577899975444799999999877
Q ss_pred HhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcC--Ccccc
Q 017726 221 ASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG--LKNCT 298 (367)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g--~~~~~ 298 (367)
.+..... .+ .++.+...+++..++++.+++.+ ..++..++.+++++.|+++. +.+..
T Consensus 296 ~~~~~~~---------------~~---T~~~np~~~aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~~ 354 (433)
T PRK08117 296 QWPLGSH---------------GT---TFGGNPVACAAALATLEVIKEEK---LLDNANEMGAYALERLEVLKEKHPVIG 354 (433)
T ss_pred hccCCCC---------------CC---CCCcCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHhcCCcee
Confidence 6642110 11 23456666777788888776553 45567777888888887752 33222
Q ss_pred CCCccCCCceEEEEcCCC------CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 299 QKEEWFSDTVTAVIVPSH------INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~------~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
.-. ..+.++.+.+.+. .....+.+.+.+ +||.+.+.. ..+..+|+++....+++++.
T Consensus 355 ~vr--g~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~g--~~~~~lRl~p~~~~t~~~i~ 417 (433)
T PRK08117 355 DVR--GIGLMIGIEIVDPDGEPDGDAVEKILDKCLE-KGLLFYLCG--NAGNVLRMIPPLTVTKEEID 417 (433)
T ss_pred eee--cCCcEEEEEEecCCCCcchHHHHHHHHHHHH-CCCEEeecC--CCCCEEEEeCCccCCHHHHH
Confidence 101 1223444444211 123456677765 599886521 12468999975555554443
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-15 Score=137.41 Aligned_cols=307 Identities=16% Similarity=0.110 Sum_probs=179.7
Q ss_pred hHHHHHHHccCCCC--CCC--CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCc
Q 017726 21 PDQVIRAMNRNNED--YRS--PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQ 94 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~ 94 (367)
.+++.+++.++... +.. ....+...++.++|.++......+.+.|++||++|++.++... .....+|+....+|
T Consensus 51 ~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~y 130 (420)
T TIGR00700 51 HPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGF 130 (420)
T ss_pred CHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCc
Confidence 45566666654332 111 1222445567777777764222246999999999999988632 23345788888888
Q ss_pred chHHHHHHHH-------HhCC-----ceEEEeCCCCCC-------C----CHHHHHHHHh--ccCCCCccEEEEEecCCC
Q 017726 95 FSLLWIDQQQ-------RLNF-----NVDVVESDWGEG-------A----KLDVLASKLA--ADTAHTIKAICIVHNETA 149 (367)
Q Consensus 95 ~~~~~~~~~~-------~~g~-----~~~~v~~~~~~~-------~----d~e~l~~~i~--~~~~~~~~lv~~~~~~n~ 149 (367)
++.....+.. ..+. .+..++.+...+ . +++.+++.+. ... +++.+|++......
T Consensus 131 HG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iAavi~Epi~g~ 209 (420)
T TIGR00700 131 HGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGA-NNVAALVIEPVQGE 209 (420)
T ss_pred CCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhhcCC-CcEEEEEECCccCC
Confidence 8864211110 0111 123333321111 0 2456666663 122 56789999988888
Q ss_pred cccccc----HHHHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCCcceeeeeCHHHHH
Q 017726 150 TGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALE 220 (367)
Q Consensus 150 tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~ 220 (367)
+|.+++ +++|+++|++ ||+++|+|+++...... +.......|+++ .+|.+++...+|++++++++++
T Consensus 210 ~G~~~~~~~~l~~l~~lc~~--~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~~--lsK~l~~G~pig~v~~~~~i~~ 285 (420)
T TIGR00700 210 GGFIVPAKGFVPALLDWCRE--HGIVFIADEVQTGFARTGAMFACEHEGPEPDLIT--TAKSLADGLPLSGVTGRAEIMD 285 (420)
T ss_pred CCCccCCHHHHHHHHHHHHH--cCCEEEEEecccCCcccchhHHHhhcCCCCCEEE--eeccccCCcceEEEEecHHHHh
Confidence 898876 8889999999 99999999998643221 111223467665 6899976555799999999887
Q ss_pred HhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-C-Ccccc
Q 017726 221 ASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-G-LKNCT 298 (367)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g-~~~~~ 298 (367)
.+..... .+ .+..+...+++..++++.+.+.++. ++..+..+++++.|+++ . ++.+.
T Consensus 286 ~~~~~~~---------------~~---T~~~~pl~~aaa~a~l~~l~~~~~~---~~~~~~g~~l~~~L~~l~~~~~~~~ 344 (420)
T TIGR00700 286 APAPGGL---------------GG---TYAGNPLACAAALAVLAIIESEGLI---ERARQIGRLVTDRLTTLKAVDPRIG 344 (420)
T ss_pred hcCCCCc---------------CC---CCCcCHHHHHHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHHHHhhCCCEE
Confidence 7653211 11 2345566667777788887776533 34555555666666554 2 22211
Q ss_pred CCCccCCCceEEEEcCCC---CC----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHH
Q 017726 299 QKEEWFSDTVTAVIVPSH---IN----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~---~~----~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~ 358 (367)
.-. ..+.++++.+.+. .+ ...+.+.+. ++||.+.++... ++++|+++....++++
T Consensus 345 ~vr--g~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~-~~Gv~i~p~~~f--~~~lRl~p~l~~~~~~ 406 (420)
T TIGR00700 345 DVR--GLGAMIAVELVDPGTTEPDAGLAERIATAAH-AAGLLLLTCGMF--GNIIRFLPPLTIGDEL 406 (420)
T ss_pred Eee--ccceEEEEEEecCCCCCccHHHHHHHHHHHH-HCCeEEeccCCC--CCEEEEECCCCcCHHH
Confidence 100 1244566655211 11 234555554 459999876332 4689999755455443
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.5e-16 Score=127.31 Aligned_cols=287 Identities=13% Similarity=0.140 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHHccC---CCCC--eE-EEEeCCcchHHHHHHHH------HhC
Q 017726 41 PALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNTL---SPGD--RI-ISFLIGQFSLLWIDQQQ------RLN 107 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~-~~~~v~~~~ggt~al~~~~~~~~---~~gd--~v-l~~~~~~~~~~~~~~~~------~~g 107 (367)
....+.+.+.+.+-+|.. .++++.+|+|+..+...++..+- ..|+ +| +-..|+|.++. .+.- ...
T Consensus 77 ~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~--d~~l~~d~fVs~k 154 (417)
T COG3977 77 AVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYA--DAGLEEDLFVSAK 154 (417)
T ss_pred hHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhcccc--ccccCccceeecc
Confidence 355666677777777776 55679999999899888776542 3343 33 33445555532 1110 011
Q ss_pred CceEEEeCC-CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccCce
Q 017726 108 FNVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAI 183 (367)
Q Consensus 108 ~~~~~v~~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~ 183 (367)
-++..++.. -..++|.+++.- . +.+.+|+++-|.||||.+.. +.++.+++++ ||+++++|.+|+..-.
T Consensus 155 P~iel~~~g~FKY~vDF~~l~i--~----e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~--~giPliIDnAYg~PFP 226 (417)
T COG3977 155 PNIELLPAGQFKYHVDFEHLHI--G----ESTGAICVSRPTNPTGNVLTDEELAKLDALARQ--HGIPLIIDNAYGVPFP 226 (417)
T ss_pred CCcccccccceeeccCHHHccc--c----cccceEEecCCCCCCCCcccHHHHHHHHHHhhh--cCCcEEEecccCCCCC
Confidence 111111110 012467777643 2 46789999999999999974 6667778888 9999999999986432
Q ss_pred eecccc----c-cceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHH
Q 017726 184 DFRMDE----W-GIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLL 256 (367)
Q Consensus 184 ~~~~~~----~-~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (367)
.+-+.+ + ..-+.+.|.||. |.+| +|+++.++++++.+...... ..+ ..++ ...
T Consensus 227 ~iifsd~~~~w~~NiilC~SLSK~--GLPG~R~GIiIane~viqaitnmn~i-isL---------ap~~-----~G~--- 286 (417)
T COG3977 227 GIIFSDATPLWNENIILCMSLSKL--GLPGSRCGIIIANEKVIQAITNMNGI-ISL---------APGR-----MGP--- 286 (417)
T ss_pred ceecccccccCCCCEEEEeehhhc--CCCCcceeEEEccHHHHHHHHhccce-eee---------cCCC-----ccH---
Confidence 222211 1 245788899995 3444 79999999999887654221 000 0111 111
Q ss_pred HHHHHHHHHHHHhChHH-----HHHHHHHHHHHHHHHHHH-cC---CccccCCCccCCCceEEEEcCC-CCCHHHHHHHH
Q 017726 257 YGLRAALDLIFEEGLEN-----VIERHRRLGKATRLAVEA-WG---LKNCTQKEEWFSDTVTAVIVPS-HINSSEIVRRA 326 (367)
Q Consensus 257 ~al~~al~~~~~~g~~~-----~~~~~~~~~~~l~~~L~~-~g---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L 326 (367)
+....++ +.-.+.+ ++--+....+...+.|++ ++ +.+..| .+..+.|+++.+ .++.++|+++|
T Consensus 287 Aia~~mi---e~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~iHkp----EGAIFlWLWf~dLPItt~~LYq~L 359 (417)
T COG3977 287 AIAAEMI---ESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCLIHKP----EGAIFLWLWFKDLPITTEELYQRL 359 (417)
T ss_pred HHHHHHh---hcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCccceeeecC----CcceeehhhhccCCCCHHHHHHHH
Confidence 1111111 1111221 233345555556666665 32 333444 344566666633 46789999999
Q ss_pred HhhCCeEEccCCC---------CCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 327 WQRYNLSLGLGLN---------KVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 327 ~~~~gv~v~~g~~---------~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
+++ ||.+.||.. ++...++|+++....+..+.-.++|.
T Consensus 360 Ka~-Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~~~~~~ie~Gva~la 406 (417)
T COG3977 360 KAR-GVLMVPGHYFFPGLDKEWPHTHQCMRMNYVPEPEKIEKGVAILA 406 (417)
T ss_pred HhC-eEEEecccccCCCCCCCCCCccceEEEecCCCHHHHHHHHHHHH
Confidence 766 999999843 34457899998877776666555554
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-15 Score=134.70 Aligned_cols=316 Identities=19% Similarity=0.139 Sum_probs=200.6
Q ss_pred CChHHHHHHHccCCC----CCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeC
Q 017726 19 HIPDQVIRAMNRNNE----DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLI 92 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~----~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~ 92 (367)
.-++.|.+++.++.. .+..+...+...++.++|.+.+-.+....+.|++||++|++.++... ......||....
T Consensus 72 H~hP~Vv~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~ 151 (447)
T COG0160 72 HNHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDG 151 (447)
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECC
Confidence 346677777777432 22233333556677777777776543345899999999999998642 334567888888
Q ss_pred CcchHHHHHHH-------HH-----hCCceEEEeCCCCCC----C--------CHHHHHHHHhcc--CCCCccEEEEEec
Q 017726 93 GQFSLLWIDQQ-------QR-----LNFNVDVVESDWGEG----A--------KLDVLASKLAAD--TAHTIKAICIVHN 146 (367)
Q Consensus 93 ~~~~~~~~~~~-------~~-----~g~~~~~v~~~~~~~----~--------d~e~l~~~i~~~--~~~~~~lv~~~~~ 146 (367)
+|++.....++ .. ....+..+|.+...+ . ..+.++..+.+. ...++.++++...
T Consensus 152 afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpI 231 (447)
T COG0160 152 AFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPI 231 (447)
T ss_pred cccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecc
Confidence 88875321111 10 112356666654321 1 234455544442 1256889999999
Q ss_pred CCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCCcceeeeeCHH
Q 017726 147 ETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPTGMGIVCASPK 217 (367)
Q Consensus 147 ~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~ 217 (367)
+.-.|.+.| +++++++|++ ||+++|+|+.|+..... +.......|+++. +|.+++...+|.++++++
T Consensus 232 QgegG~~v~p~~fl~~l~~~~~~--~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~--aK~ig~G~Pl~avv~r~e 307 (447)
T COG0160 232 QGEGGIIVPPKGFLKALRKLCRE--HGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTL--AKSLGGGLPLSAVVGRAE 307 (447)
T ss_pred cCCCCCcCCCHHHHHHHHHHHHH--cCCEEEEeccccCCCccccchhhhhcCCCCCEEEe--cccccCCCceeEEeccHH
Confidence 999998886 7789999999 99999999999754331 2333335788877 688877666899999999
Q ss_pred HHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCc
Q 017726 218 ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLK 295 (367)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~ 295 (367)
+.+ ..+.... + .+..|...+++..+.|+.+++++ +.++..+..+++++.|+++ .++
T Consensus 308 i~~-~~~g~~~---------------~---Tf~GNpva~Aaa~AvL~vie~e~---L~~~a~~~G~~l~~~L~~l~~~~~ 365 (447)
T COG0160 308 IMD-WPPGGHG---------------G---TFGGNPVACAAALAVLDVIEEEN---LLERAAELGEYLRDRLEELQEKHP 365 (447)
T ss_pred hcc-cCCcccC---------------C---CCCcCHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHHhhcC
Confidence 876 3332111 2 23456666677777888777764 5568888999999999986 466
Q ss_pred cccCCCccCCCceEEEEcCCC-----CC---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHH--HHHHhhhh
Q 017726 296 NCTQKEEWFSDTVTAVIVPSH-----IN---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV--MFNFQLLF 365 (367)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~-----~~---~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~--~~~~~~l~ 365 (367)
.+..-.. .+.++.+.+-++ .+ .+.+++.+.++ |+.+... . ..++.+||.+--..+++ |...++|+
T Consensus 366 ~IgdVRG--~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~-Glil~~~-G-~~~nviRi~PPL~is~e~~d~~l~il~ 440 (447)
T COG0160 366 LIGDVRG--LGLMIGVELVKDRDTKEPDAELAAKIVARAFER-GLLLLTC-G-PHGNVLRILPPLTISDEELDEGLDILE 440 (447)
T ss_pred ceecccc--cceEEEEEEecCCCCCCCCHHHHHHHHHHHHHc-CCEEecc-C-CCCcEEEEeCCcccCHHHHHHHHHHHH
Confidence 6654221 233444444221 11 34577777655 8866532 1 22578999887777655 34444443
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-15 Score=145.02 Aligned_cols=227 Identities=11% Similarity=0.078 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC--
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG-- 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-- 118 (367)
.....+.++..|+.+|++. ...++||+|.++.+++.+.+.+||.||+..+.|=|.. ..+...|+.+++++...+
T Consensus 194 ~G~i~eAe~~AA~~fgAd~--tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~--haLilsga~PVYl~P~rn~~ 269 (714)
T PRK15400 194 SGPHKEAEEYIARVFNADR--SYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLT--HLMMMSDVTPIYFRPTRNAY 269 (714)
T ss_pred ChHHHHHHHHHHHHhCCCc--EEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHH--HHHHHcCCeEEEeccccccc
Confidence 3557799999999999987 3588899999999999999999999999999887753 457778999999865431
Q ss_pred ---CCCC-----HHHHHHHHhccCC-CCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCce---eec
Q 017726 119 ---EGAK-----LDVLASKLAADTA-HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI---DFR 186 (367)
Q Consensus 119 ---~~~d-----~e~l~~~i~~~~~-~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~---~~~ 186 (367)
+.++ .+.+++++++++. ++|+.+++++| |..|.+++++.|.+.|+. ++ +++|+||+.-.. .++
T Consensus 270 Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~p-TYdG~~yd~~~I~~~~~~--~~--ilvDEAwgah~~F~p~~~ 344 (714)
T PRK15400 270 GILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDV--KS--IHFDSAWVPYTNFSPIYE 344 (714)
T ss_pred CCccCCCccccCHHHHHHHHHhCccccCccEEEEECC-CCccEecCHHHHHHHhCC--CC--EEEEccchhhhccCcccC
Confidence 2334 8999999988652 23447777776 899999999999999987 76 689999864211 111
Q ss_pred ---cccccc---e--EEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHH
Q 017726 187 ---MDEWGI---D--VALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYG 258 (367)
Q Consensus 187 ---~~~~~~---d--~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 258 (367)
....+. | +++-|.||.+++....+++-++.. .+...+...+..- ...+|+...+++
T Consensus 345 ~~sam~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~--------------vd~~~~n~a~~m~--~STSPsY~l~AS 408 (714)
T PRK15400 345 GKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD--------------VNEETFNEAYMMH--TTTSPHYGIVAS 408 (714)
T ss_pred CcChhhcCCCCCCceEEEEchhhcccchhHHhHHHHcCC--------------CCHHHHHHHHHHH--cCCCcHHHHHHH
Confidence 011234 4 999999999987766566544221 1111111222211 133688889999
Q ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc
Q 017726 259 LRAALDLIFEEGLENVIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 259 l~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 292 (367)
+..+.+.+....-++..++..+.+..+++.|.+.
T Consensus 409 LD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~ 442 (714)
T PRK15400 409 TETAAAMMKGNAGKRLINGSIERAIKFRKEIKRL 442 (714)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhC
Confidence 9999998886333667788888899999999886
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-15 Score=131.05 Aligned_cols=300 Identities=15% Similarity=0.109 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHH---HHHHccC-----CCCCeEEEEeCCcchHHHHHHHHHhCCceE
Q 017726 40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWE---SALTNTL-----SPGDRIISFLIGQFSLLWIDQQQRLNFNVD 111 (367)
Q Consensus 40 ~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~---~~~~~~~-----~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~ 111 (367)
+.+...++++++.++.|.+.- -+-.+.|+++=. ++|.+.- ...+.||+++..|..+.. + +...|.+|+
T Consensus 107 ~l~li~~Lq~~L~~ITG~Dav--sLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPA-S-Aam~G~~VV 182 (496)
T COG1003 107 YLELIYELQEWLKEITGMDAV--SLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPA-S-AAMAGFKVV 182 (496)
T ss_pred HHHHHHHHHHHHHHhcCCcee--eccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChh-h-HhhcCceEE
Confidence 445677888888888887762 133334443322 2344331 134578888888777753 2 566899999
Q ss_pred EEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc-cHHHHHHHHHhcCCCcEEEEeeeeccCcee-ecccc
Q 017726 112 VVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN-NLSKVRKLLDEYRHPALFLVDGVSSICAID-FRMDE 189 (367)
Q Consensus 112 ~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~-~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-~~~~~ 189 (367)
.|++++++.+|+|+|++++.+ ++.++.+++| |..|... ++.+|+++.|+ +|..|..|++.-...+. ....+
T Consensus 183 ~V~~~~~G~VDlddLk~k~~~----~~AalMiTnP-sT~GvFE~~I~ei~~ivH~--~Gg~vY~DGANlNA~vG~~rPGd 255 (496)
T COG1003 183 VVKCDENGNVDLDDLRAKAED----NLAALMITNP-STLGVFEEDIREICEIVHE--AGGQVYYDGANLNAIVGLARPGD 255 (496)
T ss_pred EEecCCCCCccHHHHHHHhcc----ceeEEEeccC-cccccchhhHHHHHHHHHH--cCCEEEecCcchhhhhccccccc
Confidence 999999999999999999994 5688888887 4567775 79999999999 99999999986433221 23445
Q ss_pred ccceEEEecCCCcccCC-----CcceeeeeCHHHHHHhccCC----CCceeechHHHHHHhhcCCccCCCCcHHHHHHHH
Q 017726 190 WGIDVALTGSQKALSLP-----TGMGIVCASPKALEASKTAK----SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLR 260 (367)
Q Consensus 190 ~~~d~~~~s~~K~~~g~-----~g~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 260 (367)
.|.|++..+.||+|+.| +|.|-+.+++.++..+.... ...+..++. ..-..+....+..+...+.-.+
T Consensus 256 ~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~---~~~s~g~~~a~~Gs~~il~~a~ 332 (496)
T COG1003 256 MGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYD---GKKSIGVSAAPYGSASILPIAW 332 (496)
T ss_pred cccceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCC---CCccceeeccccCcchHHHHHH
Confidence 68999999999999876 55678888877766555321 111111110 0001111112223444445566
Q ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEc-----CCCCCHHHHHHHHHhhCCeEE
Q 017726 261 AALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV-----PSHINSSEIVRRAWQRYNLSL 334 (367)
Q Consensus 261 ~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~L~~~~gv~v 334 (367)
..+..+..+|+++.-+...-|++|+.++|+.. .+...+. . +...=+.+.. ..+++..+++++|.+ +|+..
T Consensus 333 ~YI~~mG~~GL~~ase~AvLNANYia~rL~~~y~~~y~~~-~--~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD-~GfHa 408 (496)
T COG1003 333 AYIRMMGADGLKQASEVAVLNANYIARRLKGYYPVPYTGE-N--RVAHECILDARPLKKETGVRALDVAKRLLD-YGFHA 408 (496)
T ss_pred HHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhcCccccCCC-C--cceeEEEeechHhHhhcCCcHHHHHHHHHh-cCCCC
Confidence 67777888899999999999999999999984 3322221 1 1112233333 126788999999985 47654
Q ss_pred ccCCCCC-CCcEEEEeecCCCCHH
Q 017726 335 GLGLNKV-AGKVFRIGHLGHLNEV 357 (367)
Q Consensus 335 ~~g~~~~-~~~~iRi~~~~~~~~~ 357 (367)
-.-.+|+ -...+=|-+--.++.+
T Consensus 409 PT~~FPliV~~tLMIEPTEsEsk~ 432 (496)
T COG1003 409 PTMYFPLIVAGTLMIEPTESESKE 432 (496)
T ss_pred CcccCccccccceeecCCCCCCHH
Confidence 3322231 2334555443344433
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.9e-15 Score=136.07 Aligned_cols=288 Identities=21% Similarity=0.212 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCcchHHHHHHHH-------HhCC----
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQFSLLWIDQQQ-------RLNF---- 108 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~~-------~~g~---- 108 (367)
+...++.+.+.+.......+.+.|++||++|++.++... .....+|+....+|++........ ..+.
T Consensus 83 ~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~ 162 (421)
T PRK09792 83 ESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFP 162 (421)
T ss_pred HHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCC
Confidence 444567777777654322246899999999999988642 233457888888888853211111 0010
Q ss_pred -ceEEEeCCCCC-CC----CHHHHHHHHhcc-CCCCccEEEEEecCCCccccc-c---HHHHHHHHHhcCCCcEEEEeee
Q 017726 109 -NVDVVESDWGE-GA----KLDVLASKLAAD-TAHTIKAICIVHNETATGVTN-N---LSKVRKLLDEYRHPALFLVDGV 177 (367)
Q Consensus 109 -~~~~v~~~~~~-~~----d~e~l~~~i~~~-~~~~~~lv~~~~~~n~tG~~~-~---~~~i~~~~~~~~~~~~vi~D~~ 177 (367)
.+..++.+.+. .+ +++.+++.+.+. ..+++++|++...++++|... | +++|+++|++ +|+++|+|++
T Consensus 163 ~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~--~g~llI~DEv 240 (421)
T PRK09792 163 GSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDE--HGIVMIADEV 240 (421)
T ss_pred CCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHH--cCCEEEEecc
Confidence 12333433211 11 347788877641 114678999999999999766 5 7889999999 9999999999
Q ss_pred eccCcee---eccc--cccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCc
Q 017726 178 SSICAID---FRMD--EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPS 252 (367)
Q Consensus 178 ~~~~~~~---~~~~--~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (367)
++..... +... ....|++ +.+|.+++...+|++++++++.+.+..... .+ .+..+
T Consensus 241 ~tg~gr~G~~~a~~~~~~~pDi~--t~gK~l~~G~pigav~~~~~i~~~~~~~~~---------------~~---T~~gn 300 (421)
T PRK09792 241 QSGFARTGKLFAMDHYADKPDLM--TMAKSLAGGMPLSGVVGNANIMDAPAPGGL---------------GG---TYAGN 300 (421)
T ss_pred ccCCCCCCchhHHHhcCCCCcEE--EeehhhcCCCceEEEEEcHHHHhccCCCCc---------------CC---CCCCC
Confidence 7643221 1111 1246754 558999765568999999998877653211 12 23455
Q ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCC-CceEEEEcCCC-------CCHHHH
Q 017726 253 IQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFS-DTVTAVIVPSH-------INSSEI 322 (367)
Q Consensus 253 ~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~l 322 (367)
...+++..++++.+.+.+ ..++.+++.+++.+.|+++ .++.+.. .++ +.++++.+++. .....+
T Consensus 301 pl~~aaa~a~l~~l~~~~---~~~~~~~~g~~l~~~l~~l~~~~p~v~~---vrG~Gl~~~ie~~~~~~~~~~~~~~~~l 374 (421)
T PRK09792 301 PLAVAAAHAVLNIIDKES---LCERANQLGQRLKNTLIDAKESVPAIAA---VRGLGSMIAAEFNDPQTGEPSAAIAQKI 374 (421)
T ss_pred HHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHhCCCcce---ecccceEEEEEecCCccCCcchHHHHHH
Confidence 656666677888776653 3445556677777777664 2332221 123 56778887533 123567
Q ss_pred HHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 323 VRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 323 ~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
++.+.++ ||.+.+. ...++.||+.+....+++++.
T Consensus 375 ~~~~~~~-Gv~i~~~--g~~~~~irl~P~l~i~~~ei~ 409 (421)
T PRK09792 375 QQRALAQ-GLLLLTC--GAYGNVIRFLYPLTIPDAQFD 409 (421)
T ss_pred HHHHHHC-CcEEeec--CCCCCEEEEeCCCcCCHHHHH
Confidence 7777654 9988531 122578999866556555444
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-15 Score=137.39 Aligned_cols=290 Identities=18% Similarity=0.152 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCcchHHHHHHHHHhC-------C-----
Q 017726 43 LTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQFSLLWIDQQQRLN-------F----- 108 (367)
Q Consensus 43 ~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~g-------~----- 108 (367)
...++-+.+.+..+.+..+.+++++||++|+..++... ......|+...++|++........... .
T Consensus 85 ~~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~ 164 (425)
T PRK08088 85 PYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPG 164 (425)
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCC
Confidence 34467777777666443235899999999888877542 233456777788888864211111110 0
Q ss_pred ceEEEeCCCC-CCCC----HHHHHHHHhcc-CCCCccEEEEEecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeee
Q 017726 109 NVDVVESDWG-EGAK----LDVLASKLAAD-TAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 109 ~~~~v~~~~~-~~~d----~e~l~~~i~~~-~~~~~~lv~~~~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
.+..++.+.+ ...+ ++++++++++. ..+++++|++.......|.+.+ +++|.++|++ +|+++|+|+++
T Consensus 165 ~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~--~~~~lI~Dev~ 242 (425)
T PRK08088 165 HVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDE--HGIMLIADEVQ 242 (425)
T ss_pred CcEEcCCCccccCccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHH--cCCEEEEeccc
Confidence 0111111111 1122 45688877521 1145678887777666676665 8889999999 99999999998
Q ss_pred ccCcee---eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHH
Q 017726 179 SICAID---FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQL 255 (367)
Q Consensus 179 ~~~~~~---~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (367)
+..... ......+.+.-+.|++|.+++...+|++++++++++.+..... . ..+..+...
T Consensus 243 ~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G~rig~v~~~~~~~~~~~~~~~----------------~--~t~~~~~~~ 304 (425)
T PRK08088 243 TGAGRTGTLFAMEQMGVAADLTTFAKSIAGGFPLAGVTGRAEVMDAIAPGGL----------------G--GTYAGNPIA 304 (425)
T ss_pred cCCCcCcchhHHhhcCCCCCEEEEeccccCCCcceeeEecHHHHhhcCCCCC----------------C--CCCCcCHHH
Confidence 742211 1111123333356779999765558999999999887754211 1 123355555
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCCceEEEEcCCC--------CCHHHHHHH
Q 017726 256 LYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSH--------INSSEIVRR 325 (367)
Q Consensus 256 ~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~ 325 (367)
+.+..++++....+. ..++.++..+++++.|+++ ..+.+..-. ..+.++++.+.++ ....++.+.
T Consensus 305 ~~a~~~~l~~~~~~~---~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~--g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~ 379 (425)
T PRK08088 305 CAAALAVLKVFEQEN---LLQKANALGEKLKDGLLAIAEKHPEIGDVR--GLGAMIAIELFEDGDHSKPNAKLTAQIVAR 379 (425)
T ss_pred HHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCCeEEEe--ccceEEEEEEecCCCCCCCCHHHHHHHHHH
Confidence 666666777665544 3333444445555555443 122211100 1255778877322 125678888
Q ss_pred HHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 326 AWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 326 L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
+.++ ||.+.++... ++.+|+++....+++++.
T Consensus 380 ~~~~-Gv~~~~~~~~--~~~iRl~~~~~~t~~ei~ 411 (425)
T PRK08088 380 ARDK-GLILLSCGPY--YNVLRILVPLTIEDAQIR 411 (425)
T ss_pred HHhC-CCEEecCCCC--CCEEEEECCCCcCHHHHH
Confidence 8655 9888754221 467999987666555433
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-15 Score=134.68 Aligned_cols=275 Identities=15% Similarity=0.066 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc----CC-CC---CeEEEEeCCcchHHHHHHHHHhCCceE
Q 017726 40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT----LS-PG---DRIISFLIGQFSLLWIDQQQRLNFNVD 111 (367)
Q Consensus 40 ~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~----~~-~g---d~vl~~~~~~~~~~~~~~~~~~g~~~~ 111 (367)
......++...++.+++.+++.+-..|.|+|++..++.... .+ .| ..++++...+ .-|.+.++.++++++
T Consensus 118 ~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~--~a~eK~a~yf~v~l~ 195 (491)
T KOG1383|consen 118 VRKLEAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVH--AAFEKAARYFEVELR 195 (491)
T ss_pred hHHHHHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHH--HHHHHHHhhEEEEEE
Confidence 34556788889999999987665677888899955444321 11 11 1233322211 127788999999999
Q ss_pred EEeCC-CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCce-------
Q 017726 112 VVESD-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI------- 183 (367)
Q Consensus 112 ~v~~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~------- 183 (367)
.|+++ .+.++|+..+.+.+++ +|..++.+.++.|+|.+.|+++|.++..+. +++.+++|++.+.+..
T Consensus 196 ~V~~~~~~~~~D~~k~~~~i~e----Nti~lv~~~~~~p~G~~e~ve~l~~l~~e~-w~ipiHvDa~~GgFi~p~~~~~~ 270 (491)
T KOG1383|consen 196 EVPLDEGDYRVDPGKVVRMIDE----NTIMLVGSLPNFPTGEIEDVEKLADLLLEI-WDIPIHVDACLGGFINPAGYLNE 270 (491)
T ss_pred eeeccccceEecHHHHHHHhcc----ceEEEEEEcCCCCccchhhHHHHHHHHHHH-hCCceeecccCccccccccccCc
Confidence 99998 5678999999999996 559999999999999999999999998774 7999999999876554
Q ss_pred -eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHH
Q 017726 184 -DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAA 262 (367)
Q Consensus 184 -~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~a 262 (367)
.+++...++-.+..++||+-..|.|+|+++-+.+-...-+-. +..+|. ..........++-+-.++++.+++
T Consensus 271 ~~fdFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~----~~~~w~---Gg~y~s~TlngSR~g~~va~~wa~ 343 (491)
T KOG1383|consen 271 EEFDFRVPGVTSISADGHKYGLAPAGSSWVLYRNKELLPHQLF----FHTDWL---GGIYASPTLNGSRPGSQVAAQWAA 343 (491)
T ss_pred cccccCCCCceeEeeccceeeeeecCcEEEEEcccccccceEE----Eecccc---CccccCcccccCCcccHHHHHHHH
Confidence 345555677788999999988899998888665532211100 001110 111111112334566677899999
Q ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEE
Q 017726 263 LDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSL 334 (367)
Q Consensus 263 l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v 334 (367)
+-.+.++|..+..+++.+++..+++.+++. ++.+++. ....++.+. ....+.-++.+.|.++ |..+
T Consensus 344 ~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gk----p~vs~~~~~-s~~~~i~elsd~l~~~-GW~l 410 (491)
T KOG1383|consen 344 LMSLGEEGYRENTQNIVETARKLREGIENIKGIKIVGK----PLVSFILFG-SNDVNIFELSDLLRKK-GWIL 410 (491)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCC----CcEEEEEcc-CCccchhhhhHHHHhc-CcCc
Confidence 999999999999999999999999999998 8999885 232233332 2456778899999755 7544
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-14 Score=131.93 Aligned_cols=306 Identities=16% Similarity=0.176 Sum_probs=184.4
Q ss_pred hHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCc
Q 017726 21 PDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQ 94 (367)
Q Consensus 21 ~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~ 94 (367)
++.+.+++.++... ...+...+...++-+.|.+...... +.+.|++||++|++.++... .....+|+....+|
T Consensus 59 ~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~-~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~y 137 (443)
T PRK08360 59 NPRVVKAIKEQTDKLIHYTPIYGFPVEPLLLAEKLIEIAPGDN-PKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSY 137 (443)
T ss_pred CHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCCC-CEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 45555555554332 1112223445677777877765432 36999999999999988642 23345677777778
Q ss_pred chHHHHHHHHHhC------------CceEEEeCCCCCC------------CCHHHHHHHHhcc-CCCCccEEEEEecCCC
Q 017726 95 FSLLWIDQQQRLN------------FNVDVVESDWGEG------------AKLDVLASKLAAD-TAHTIKAICIVHNETA 149 (367)
Q Consensus 95 ~~~~~~~~~~~~g------------~~~~~v~~~~~~~------------~d~e~l~~~i~~~-~~~~~~lv~~~~~~n~ 149 (367)
++....... ..+ ..+..++.+.... -+++.++++++.. ..+++++|++...+|+
T Consensus 138 HG~t~~a~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~ 216 (443)
T PRK08360 138 YGSTYGAMS-LTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGD 216 (443)
T ss_pred CCcCHHHHH-hcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCC
Confidence 775321111 111 1133343332110 1234566666531 1157899999988899
Q ss_pred cccccc----HHHHHHHHHhcCCCcEEEEeeeeccCceee-----ccccccceEEEecCCCcccCCCcceeeeeCHHHHH
Q 017726 150 TGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAIDF-----RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALE 220 (367)
Q Consensus 150 tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~-----~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~ 220 (367)
+|.+++ ++++.++|++ +|+++|+|+++......- .......|+++. +|.+++...+|++++++++++
T Consensus 217 ~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitl--sK~l~~G~pigav~~~~~i~~ 292 (443)
T PRK08360 217 AGMIVPPEDYFKKLKKILDE--HGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITL--GKPLGGGLPISATIGRAEIMD 292 (443)
T ss_pred CCCcCCCHHHHHHHHHHHHH--cCCEEEEeccccCCCcCccchhhhhcCCCCCEEEe--cccccCCceeEEEEEcHHHHh
Confidence 998876 7789999999 999999999987432211 111234577654 899975444799999999887
Q ss_pred HhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCcccc
Q 017726 221 ASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCT 298 (367)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~ 298 (367)
.+..... + ..+..+...+++..++++.+.+.+ ..++.+++.+++++.|+++ ...++.
T Consensus 293 ~~~~~~~----------------~--~T~~~~p~~~aaa~a~l~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~v~ 351 (443)
T PRK08360 293 SLPPLAH----------------A--FTLSGNPVASAAALAVIEEIEEKN---LLKRAEKLGNYTKKRLEEMKKKHELIG 351 (443)
T ss_pred hhcCCCC----------------C--CCCCcCHHHHHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 7753210 1 122345555677777888877654 4567777888888888775 344333
Q ss_pred CCCccCCCceEEEEcCCC--------CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 299 QKEEWFSDTVTAVIVPSH--------INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
.-. -.+.++.+.+.+. .....+.+.+.+ +||.+.+. .+..+|+++....+++|+.
T Consensus 352 ~vr--g~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~----~~~~lr~~P~l~~t~~~id 414 (443)
T PRK08360 352 DVR--GIGLMIGVDLVKDRETKERAYEEAAKVVWRAWE-LGLIVTFF----SGNVLRIQPPLTIEKEVLD 414 (443)
T ss_pred eee--ccceEEEEEEecCCcccCccHHHHHHHHHHHHH-CCeEEeec----CCCEEEEeCCCCCCHHHHH
Confidence 211 1333454544211 013467777765 49988642 2467999877777666544
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.4e-16 Score=134.12 Aligned_cols=272 Identities=13% Similarity=0.105 Sum_probs=184.1
Q ss_pred CCCCChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC------------
Q 017726 16 GPVHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL------------ 81 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~------------ 81 (367)
.|..+..+.+.+..+.+.. ...|.+.-...++-....+..|.+..-+-+|++||+-++..++.+..
T Consensus 113 D~~~Lag~wlT~t~Ntn~~TYEiAPvF~lmE~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm 192 (510)
T KOG0629|consen 113 DPIGLAGEWLTSTANTNMFTYEIAPVFVLMEEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGM 192 (510)
T ss_pred CHHHHHHHHHHhccCCCCceEEecceEEeehHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhh
Confidence 4555555566555554332 11344555667788888889999864336899999977777664321
Q ss_pred --CCCCeEEEEeCCcchHHHHHHHHHhC---CceEEEeCCCCCCCCHHHHHHHHhccCC--CCccEEEEEecCCCccccc
Q 017726 82 --SPGDRIISFLIGQFSLLWIDQQQRLN---FNVDVVESDWGEGAKLDVLASKLAADTA--HTIKAICIVHNETATGVTN 154 (367)
Q Consensus 82 --~~gd~vl~~~~~~~~~~~~~~~~~~g---~~~~~v~~~~~~~~d~e~l~~~i~~~~~--~~~~lv~~~~~~n~tG~~~ 154 (367)
-|.-.+.++...|||. .+.+..+| -+++.|++++.|.+++++||++|.+... -.|-+|..+...+..|.+.
T Consensus 193 ~~~p~lilFtSeesHYSi--~kaAa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFD 270 (510)
T KOG0629|consen 193 FALPPLILFTSEESHYSI--KKAAAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFD 270 (510)
T ss_pred hcCCcEEEEecccchhhH--HHHHHHhccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccC
Confidence 1222334455566664 35566666 6889999999999999999999988531 1256777888889999999
Q ss_pred cHHHHHHHHHhcCCCcEEEEeeeeccCcee-------eccccccceEEEecCCCcccCCCcceeeeeCHHH-HHHhccCC
Q 017726 155 NLSKVRKLLDEYRHPALFLVDGVSSICAID-------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKA-LEASKTAK 226 (367)
Q Consensus 155 ~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-------~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~-~~~~~~~~ 226 (367)
|+..|+++|++ |+.|++||+|.+.+.+- +... ..++.+..++||+++.|..++....+.+- +++.....
T Consensus 271 dL~~iadiC~k--~~lWmHvDAAwGGglLmS~k~R~kl~Gi-era~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~ 347 (510)
T KOG0629|consen 271 DLNGIADICEK--HKLWMHVDAAWGGGLLMSRKHRHKLTGI-ERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMS 347 (510)
T ss_pred cHHHHHHHHHh--cCEEEEeecccccccccChhhHhhccCc-cccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccc
Confidence 99999999999 99999999998865431 1111 25789999999999888878877776665 33322211
Q ss_pred C------Ccee-echHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCcccc
Q 017726 227 S------VRVF-FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCT 298 (367)
Q Consensus 227 ~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 298 (367)
. ..+| ..+....+..+.|+ ..++ .-++..++.-...|.++.++++.++++||.++|++. |+..+.
T Consensus 348 A~YLFq~dK~YdvS~DTgdK~iQCGR----h~D~---FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~ 420 (510)
T KOG0629|consen 348 AIYLFQQDKFYDVSYDTGDKAIQCGR----HVDV---FKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLF 420 (510)
T ss_pred hhhhhccCceeecccccccchhhcCc----cccH---HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehh
Confidence 1 1111 11222233444453 2344 345555565566789999999999999999999998 655554
Q ss_pred C
Q 017726 299 Q 299 (367)
Q Consensus 299 ~ 299 (367)
.
T Consensus 421 ~ 421 (510)
T KOG0629|consen 421 E 421 (510)
T ss_pred c
Confidence 3
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-14 Score=132.45 Aligned_cols=309 Identities=16% Similarity=0.152 Sum_probs=184.7
Q ss_pred hHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHhcCC--CCceEEe-cCChhHHHHHHHHcc--CCCCCeEEEEe
Q 017726 21 PDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTT--SGTPFLI-PTTGTGAWESALTNT--LSPGDRIISFL 91 (367)
Q Consensus 21 ~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~~~~--~~~~v~~-~~ggt~al~~~~~~~--~~~gd~vl~~~ 91 (367)
++.+.+++.++... +......+...++-+++.+.+..+ ..+.+.| ++||++|++.++... .....+|+...
T Consensus 53 ~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~ 132 (412)
T TIGR02407 53 NPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKVTGRSNVVSFT 132 (412)
T ss_pred CHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEEC
Confidence 56666666664331 111112344556777777764222 1223556 589999999988642 23346788888
Q ss_pred CCcchHHHHHHHH------H--hC---CceEEEeCCCCCC---CCHHHHHHHHhccCC--CCccEEEEEecCCCcccccc
Q 017726 92 IGQFSLLWIDQQQ------R--LN---FNVDVVESDWGEG---AKLDVLASKLAADTA--HTIKAICIVHNETATGVTNN 155 (367)
Q Consensus 92 ~~~~~~~~~~~~~------~--~g---~~~~~v~~~~~~~---~d~e~l~~~i~~~~~--~~~~lv~~~~~~n~tG~~~~ 155 (367)
.+|++........ . .+ ..+..+|.+.... -+++.+++.++++.. +++.+|++....+..|.+.+
T Consensus 133 ~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~ 212 (412)
T TIGR02407 133 NAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVA 212 (412)
T ss_pred CCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccC
Confidence 8888864211111 0 11 1223344321100 246778888864321 25688899988899998653
Q ss_pred ----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccC-CCcceeeeeCHHHHHHhccC
Q 017726 156 ----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSL-PTGMGIVCASPKALEASKTA 225 (367)
Q Consensus 156 ----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g-~~g~g~~~~~~~~~~~~~~~ 225 (367)
+++|+++|++ +|+++|+|++++.... .........|++++ +|++++ ...+|++++++++ +.+...
T Consensus 213 ~~~~l~~l~~lc~~--~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~~--~K~lg~~G~pigav~~~~~~-~~~~~~ 287 (412)
T TIGR02407 213 SDEWLQRLEKLCRR--HDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVCL--SKSISGYGLPLALTLIKPEL-DVWKPG 287 (412)
T ss_pred CHHHHHHHHHHHHH--cCCEEEEechhhCCCccchhHHhcccCCCCCEEEe--chhccCCccceeEEEEchhh-hccCCC
Confidence 7889999999 9999999999862211 12223345787765 599864 4447999998875 444311
Q ss_pred CCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHH-HHHhChHHHHHHHHHHHHHHHHHHHHc--CCc-cccCCC
Q 017726 226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL-IFEEGLENVIERHRRLGKATRLAVEAW--GLK-NCTQKE 301 (367)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~-~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~-~~~~~~ 301 (367)
. ..+ .++.+...+++..++++. +.+. +..++..+..+++.+.|+++ .+. .....
T Consensus 288 ~---------------~~~---T~~gnpl~~aaa~a~l~~~i~~~---~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~v- 345 (412)
T TIGR02407 288 E---------------HNG---TFRGNNLAFVTATAALEYYWSDD---AFEKAVQRKSEIIQERLDRIVAEYPELIKQV- 345 (412)
T ss_pred c---------------cCC---CCCccHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHhhCCCceEee-
Confidence 0 012 334566666677778885 4443 34556677777777777663 222 11111
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 302 EWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
...+.++++.+++.....++.+.+.++ ||.+.+.- ..++.+|+++....+++|+.
T Consensus 346 -rg~Gl~~~l~l~~~~~~~~~~~~~~~~-Gv~v~~~~--~~~~~lr~~p~l~~t~~~i~ 400 (412)
T TIGR02407 346 -RGRGLMQGIECGDGDLAGKIAKAAFEN-GLIIETSG--PNDEVIKLLPPLTIDEETLQ 400 (412)
T ss_pred -ecceeEEEEEecChHHHHHHHHHHHHC-CCEEeccC--CCCCEEEEECCCCCCHHHHH
Confidence 124557788885443356788888755 99987531 12467999987777766544
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-15 Score=126.04 Aligned_cols=307 Identities=15% Similarity=0.104 Sum_probs=217.9
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCC---eEEEEeCCcchHH--HHHHHHHhCCceE----E
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGD---RIISFLIGQFSLL--WIDQQQRLNFNVD----V 112 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd---~vl~~~~~~~~~~--~~~~~~~~g~~~~----~ 112 (367)
..-+-....++.+.|+.+.+ |.+.++-|.-+..++.++..|-. +|+...-.++|.. +.+.++.-|+++. .
T Consensus 111 ~~De~il~l~~~iVGA~e~E-vavmNsLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~ 189 (465)
T KOG3846|consen 111 SIDEPILPLLAPIVGAQENE-VAVMNSLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQ 189 (465)
T ss_pred ecchhhhhhhhhhccCCchh-hhhHhhhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEE
Confidence 33445667788999998865 88889888888888888776543 5666655555543 4466777787643 2
Q ss_pred EeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeecccccc
Q 017726 113 VESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWG 191 (367)
Q Consensus 113 v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~ 191 (367)
+.-.+ +..+-.|++...|++++ ....+|+++..+..||...|+.+|...-+. .|++|=.|-+|+.+-.+.-+..|+
T Consensus 190 iePREGEetlRteDILd~IEkng-DeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~--kgc~VGfDLAHAvgNVpL~LHdWg 266 (465)
T KOG3846|consen 190 IEPREGEETLRTEDILDTIEKNG-DEIALVCFSGVQYYTGQYFDIGAITFAGQF--KGCLVGFDLAHAVGNVPLQLHDWG 266 (465)
T ss_pred ecccccccchhHHHHHHHHHhcC-CeEEEEEeecceeecccccchhhhhhcccC--CCcEechhhhhhhcCCceEEeecC
Confidence 32222 23566788888888876 567889999999999999999999976666 899999999999999999999999
Q ss_pred ceEEEecCCCcccCC-CcceeeeeCHHHHHHhccCCCCceeechHHHH---HHhh----cCCccCCCCcHHHHHHHHHHH
Q 017726 192 IDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVFFDWKDYI---KFYN----LGTFWPYTPSIQLLYGLRAAL 263 (367)
Q Consensus 192 ~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~al~~al 263 (367)
+||.+.+++|+++.. .|+|.+.+..++.....+...+.+..+....- ..++ ..+|-...|++...+++..+|
T Consensus 267 VDFACWCSYKYlnaGaGgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SL 346 (465)
T KOG3846|consen 267 VDFACWCSYKYLNAGAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSL 346 (465)
T ss_pred CceEEEeeecccccCCCccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhH
Confidence 999999999999654 55788888888766555554443333211110 0011 011112348899999999999
Q ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCc-----------cccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCC
Q 017726 264 DLIFEEGLENVIERHRRLGKATRLAVEAW-GLK-----------NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYN 331 (367)
Q Consensus 264 ~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 331 (367)
+.+.+..+++++++..-+..|+...++.. |.+ ++.|..-...+....+.+.. +...+.+.|.+ +|
T Consensus 347 e~F~q~~~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fss--p~~~vfqeL~k-rG 423 (465)
T KOG3846|consen 347 ELFAQFNINELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSS--PTPKVFQELHK-RG 423 (465)
T ss_pred HHHHHhhHHHHhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeCC--CchHHHHHHHH-cC
Confidence 99998889999999999998888877764 533 34443323345566666632 44688899964 48
Q ss_pred eEEccCCCCCCCcEEEEeecC-CCCHHHH
Q 017726 332 LSLGLGLNKVAGKVFRIGHLG-HLNEVMF 359 (367)
Q Consensus 332 v~v~~g~~~~~~~~iRi~~~~-~~~~~~~ 359 (367)
+.+. ...++.||+++.. +++..|.
T Consensus 424 v~~D----kR~PNvIRvAPvpLYN~f~Dv 448 (465)
T KOG3846|consen 424 VIGD----KRRPNVIRVAPVPLYNTFSDV 448 (465)
T ss_pred eecc----ccCCCceEeecchhhccHHHH
Confidence 8653 2345789999866 6665554
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-14 Score=131.52 Aligned_cols=309 Identities=14% Similarity=0.090 Sum_probs=187.9
Q ss_pred hHHHHHHHccCCCC--CC--CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC-------CCCCeEEE
Q 017726 21 PDQVIRAMNRNNED--YR--SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-------SPGDRIIS 89 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~--~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~-------~~gd~vl~ 89 (367)
++++.+++.++... +. .....+...++.++|+++.... .+.+.|++||++|++.++.... .+..+|+.
T Consensus 61 ~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~-~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~ 139 (428)
T PRK07986 61 HPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLVAMTPQP-LECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLT 139 (428)
T ss_pred CHHHHHHHHHHHhhcCCccccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 45666666665432 11 1112344567777777776432 2469999999999999886421 23467888
Q ss_pred EeCCcchHHHHHHHHHhC-------------CceEEEeCCCCC------CCCHHHHHHHHhccCCCCccEEEEEec-CCC
Q 017726 90 FLIGQFSLLWIDQQQRLN-------------FNVDVVESDWGE------GAKLDVLASKLAADTAHTIKAICIVHN-ETA 149 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~~------~~d~e~l~~~i~~~~~~~~~lv~~~~~-~n~ 149 (367)
...+|++........ .+ ..+..++..... .-|++++++.+++.. +++.+|++... +..
T Consensus 140 ~~~~yHG~t~~a~s~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~-~~iaavi~Epi~~g~ 217 (428)
T PRK07986 140 LRHGYHGDTFGAMSV-CDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHR-HEIAAVILEPIVQGA 217 (428)
T ss_pred ECCCcCCCcHhhhcc-cCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCC-CcEEEEEEechhcCc
Confidence 888888753211110 01 112233322110 125678888886543 45677777764 555
Q ss_pred cccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCC-CcceeeeeCHHHH
Q 017726 150 TGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKAL 219 (367)
Q Consensus 150 tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~ 219 (367)
.|.+.+ +++|+++|++ +|+++|+||++..... .........|+++ .+|.++|. ..+|.+++++++.
T Consensus 218 gg~~~~~~~~L~~l~~lc~~--~g~lLI~DEv~tG~GrtG~~fa~~~~gv~PDi~t--~gK~l~gG~~p~~av~~~~~i~ 293 (428)
T PRK07986 218 GGMRIYHPEWLKRVRKLCDR--EGILLIADEIATGFGRTGKLFACEHAGIAPDILC--LGKALTGGTMTLSATLTTREVA 293 (428)
T ss_pred CCcccCCHHHHHHHHHHHHH--cCCEEEEeccccCCccCCCeeeecccCCCCCEEE--echhhhCCcccCcchhchHHHH
Confidence 665542 7899999999 9999999999853221 1122233468885 58988665 3468888999988
Q ss_pred HHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCcccc
Q 017726 220 EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCT 298 (367)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 298 (367)
+.+.......+. .+. .++.+...+++..++++.+.+.+ ..++..++.++|.+.|+++ ..+.+.
T Consensus 294 ~~~~~~~~~~~~-----------~~~--T~~g~p~~~aaa~a~L~~i~~~~---~~~~~~~~g~~l~~~l~~l~~~~~i~ 357 (428)
T PRK07986 294 ETISNGEAGCFM-----------HGP--TFMGNPLACAVANASLSLLESGD---WQQQVAAIEAQLREELAPLRDAPMVA 357 (428)
T ss_pred HHhhcCCCCccc-----------cCC--CCCcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 777532100000 121 33466777788888888887764 3667888888999988886 433332
Q ss_pred CCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
.-. -.+.+..+.+.+..+...+.+.+.++ ||.+.+. ++.+|+.+.-..+++++.
T Consensus 358 ~vR--g~Gl~~~ve~~~~~~~~~~~~~l~~~-Gl~~~~~-----g~~i~~~Ppl~it~~ei~ 411 (428)
T PRK07986 358 DVR--VLGAIGVVETTRPVNMAALQRFFVEQ-GVWIRPF-----GKLIYLMPPYIILPEQLQ 411 (428)
T ss_pred eEe--ccceEEEEEeCCcccHHHHHHHHHHC-CcEEEec-----CCEEEEeCCCCCCHHHHH
Confidence 110 12335555553333456788888655 9998652 357999876666655443
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.7e-14 Score=131.24 Aligned_cols=286 Identities=20% Similarity=0.143 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCcchHHHHHHHHHhCC-----------
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQFSLLWIDQQQRLNF----------- 108 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~g~----------- 108 (367)
+...++-+.+.++......+.+.|++||++|++.++... .....+|+....+|++....... ..+.
T Consensus 83 ~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s-~t~~~~~~~~~~~~~ 161 (421)
T PRK06777 83 ASYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMA-LTGKVAPYKVGFGPF 161 (421)
T ss_pred hHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHh-hcCCCcccccCCCCC
Confidence 344567777777765332346899999999999988642 23345688888888886421111 1111
Q ss_pred --ceEEEeCCCCC-----CCCHHHHHHHHhc--cCCCCccEEEEEecCCCcccc-cc---HHHHHHHHHhcCCCcEEEEe
Q 017726 109 --NVDVVESDWGE-----GAKLDVLASKLAA--DTAHTIKAICIVHNETATGVT-NN---LSKVRKLLDEYRHPALFLVD 175 (367)
Q Consensus 109 --~~~~v~~~~~~-----~~d~e~l~~~i~~--~~~~~~~lv~~~~~~n~tG~~-~~---~~~i~~~~~~~~~~~~vi~D 175 (367)
.+..++.+... ..+++.+++.+.+ .+ +++.+|++....+..|.. .| +++|.++|++ +|+++|+|
T Consensus 162 ~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~-~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~--~g~llI~D 238 (421)
T PRK06777 162 PGSIFHALYPNELHGVSVEEALSSVERLFKADIAP-DQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDE--HGILLIAD 238 (421)
T ss_pred CCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCC-CceEEEEECCccCCCCCccCCHHHHHHHHHHHHH--cCCEEEEe
Confidence 11222222111 1135667777753 22 467888888888888864 44 8899999999 99999999
Q ss_pred eeeccCcee---eccc--cccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCC
Q 017726 176 GVSSICAID---FRMD--EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT 250 (367)
Q Consensus 176 ~~~~~~~~~---~~~~--~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (367)
+++...... +... ....|++ +.+|.+++...+|++++++++++.+..... +. .+.
T Consensus 239 Ev~tg~gr~g~~~~~~~~~~~pDiv--~~sK~l~~G~pigav~~~~~i~~~~~~~~~----------------~~--T~~ 298 (421)
T PRK06777 239 EVQTGFARTGKLFAMEYYDVKPDLI--TMAKSLGGGMPISAVVGRAEVMDAPAPGGL----------------GG--TYA 298 (421)
T ss_pred chhhCCccCCchhhhhhcCCCCCEE--eeehhhcCCCceEEEEEcHHHHhccCCCCC----------------CC--CCC
Confidence 998743211 1111 2236766 568999755557999999998776653211 11 234
Q ss_pred CcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCCceEEEEcCC---CCCH----HH
Q 017726 251 PSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPS---HINS----SE 321 (367)
Q Consensus 251 ~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~ 321 (367)
.+...+++..++++.+.++ .+.++..++.+++.+.|+++ ..+.+..-. ..+.++.+.+.+ +.+. ..
T Consensus 299 ~~p~~~aaa~a~L~~~~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr--g~G~~~~i~~~~~~~~~~~~~~~~~ 373 (421)
T PRK06777 299 GNPLAVAAALAVLDVIAEE---KLCQRALILGAHLVEVLEKAKASCPAIVDIR--ARGSMVAVEFNDPQTGKPSPEFTRQ 373 (421)
T ss_pred cCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHhCCCeEEec--CceEEEEEEEecCccCCccHHHHHH
Confidence 5666677777788877664 45667888888888888875 222221100 122344443311 1112 23
Q ss_pred HHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 322 IVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 322 l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
+.+.+.+ .||.+.++-.. ++++|+++....+++++
T Consensus 374 l~~~~~~-~Gv~i~~~~~~--g~~lr~~ppl~i~~~~i 408 (421)
T PRK06777 374 YQRQALE-EGLLLLSCGVH--GNVIRFLYPLTIPDAQF 408 (421)
T ss_pred HHHHHHh-CCeEEeecCCC--CCEEEEeCCCCCCHHHH
Confidence 4444444 59999875322 46899997545554443
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-14 Score=132.96 Aligned_cols=293 Identities=14% Similarity=0.102 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC------C-C-CCeEEEEeCCcchHHHHHHHHHhCCc---
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL------S-P-GDRIISFLIGQFSLLWIDQQQRLNFN--- 109 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~------~-~-gd~vl~~~~~~~~~~~~~~~~~~g~~--- 109 (367)
.+...++.++|.+.+.-.+...+.|++||++|+..++.... . + ..+||....+|++..+.. ....|.+
T Consensus 132 ~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a-~slsg~~~~~ 210 (504)
T PLN02760 132 TKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLIS-ASLSGLPALH 210 (504)
T ss_pred cHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhh-hhccCChhhc
Confidence 34556777777777532222358999999999999887532 1 2 357888888888864321 1112211
Q ss_pred ---------eEEEeCCCCCC-------------CCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----HHHHHHHH
Q 017726 110 ---------VDVVESDWGEG-------------AKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLL 163 (367)
Q Consensus 110 ---------~~~v~~~~~~~-------------~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~~i~~~~ 163 (367)
+..++.+..++ ...+++++++.+...+++.+|++.......|.+.| +++++++|
T Consensus 211 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc 290 (504)
T PLN02760 211 QKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVL 290 (504)
T ss_pred cCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHH
Confidence 22233221111 01245777765322145788888888888898887 99999999
Q ss_pred HhcCCCcEEEEeeeec-cCcee----eccccccceEEEecCCCcccCCC-cceeeeeCHHHHHHhccCCCCceeechHHH
Q 017726 164 DEYRHPALFLVDGVSS-ICAID----FRMDEWGIDVALTGSQKALSLPT-GMGIVCASPKALEASKTAKSVRVFFDWKDY 237 (367)
Q Consensus 164 ~~~~~~~~vi~D~~~~-~~~~~----~~~~~~~~d~~~~s~~K~~~g~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (367)
++ +|+++|+||++. +|-.- .......+|++++ .|.++|.. .+|.+++++++.+.+........
T Consensus 291 ~~--~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~lggG~~PigAv~~~~~i~d~~~~~~~~~~------- 359 (504)
T PLN02760 291 KK--YDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSL--AKALSSAYMPIGAVLVSPEISDVIHSQSNKLG------- 359 (504)
T ss_pred HH--cCCEEEecchhhCCcccchhhHHHhcCCCCcEEEe--cccccCCccccceEeecHHHHhhhhccccccc-------
Confidence 99 999999999984 43221 1222234787665 78886642 36889999998877653110000
Q ss_pred HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCC
Q 017726 238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSH 316 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 316 (367)
.+..+. .++.+...+++..++|+.+++++ +.++.+++.++|++.|+++ ...++..-. -.+.++.+.+.+.
T Consensus 360 --~~~h~~--T~~gnPl~~Aaala~Le~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~v~~vr--G~Gl~~gie~~~~ 430 (504)
T PLN02760 360 --SFAHGF--TYSGHPVSCAVALEALKIYKERN---IPEHVNKIAPRFQDGIKAFSGSPIIGEIR--GTGLILGTEFVDN 430 (504)
T ss_pred --CcccCC--CCCCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHhcCCCeeeEE--eCceEEEEEEecC
Confidence 001121 33456667777788888887764 4567788888888888775 333322111 1233555544221
Q ss_pred CC-----------HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 317 IN-----------SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 317 ~~-----------~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
.. ...+.+.+.+ +||.+.+. +..+|+++....+++|++
T Consensus 431 ~~~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~~-----g~~lrl~Ppl~it~eeid 479 (504)
T PLN02760 431 KSPNDPFPAEWGVGAYFGAECKK-RGMLVRVA-----GDNIMMSPPLIITPEEVD 479 (504)
T ss_pred CcccccccchhHHHHHHHHHHHh-CCcEEEec-----CCEEEEECCCCCCHHHHH
Confidence 11 3346677765 49988652 346899977666655443
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-14 Score=137.45 Aligned_cols=225 Identities=13% Similarity=0.100 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC-C-
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW-G- 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~- 118 (367)
.....+.++..|+.+|++. ...++||+|.++.+++.+.+.+||+||+..+.|=|.. ..+...|+.+++++... .
T Consensus 194 ~G~i~eAe~~aA~~fgAd~--tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~--~aLilsga~PVYl~P~~n~~ 269 (713)
T PRK15399 194 TGPHLEAEEYIARTFGAEQ--SYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLA--HLLMMSDVVPIWLKPTRNAL 269 (713)
T ss_pred ChHHHHHHHHHHHHhCCCc--EEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHH--HHHHHcCCeeEEeccccccc
Confidence 3557789999999999987 3588899999999999999999999999999887753 45777899999986442 1
Q ss_pred ---CCCCH-----HHHHHHHhccCC-CCccEEEEEecCCCccccccHHHHHHHHHhcCCCc-EEEEeeeeccCce--e-e
Q 017726 119 ---EGAKL-----DVLASKLAADTA-HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPA-LFLVDGVSSICAI--D-F 185 (367)
Q Consensus 119 ---~~~d~-----e~l~~~i~~~~~-~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~-~vi~D~~~~~~~~--~-~ 185 (367)
+.++. +.+++++++++. ++|+.+++++| |..|.+++++.|.+.| |+ ++++|+||+.-.. + +
T Consensus 270 Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~p-TYdGi~yd~~~I~~~~-----g~~~ilvDEAhgah~~F~p~~ 343 (713)
T PRK15399 270 GILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNS-TYDGLLYNTDWIKQTL-----DVPSIHFDSAWVPYTHFHPIY 343 (713)
T ss_pred CCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECC-CCCceeeCHHHHHHHh-----CCCEEEEeccchhhhhcCccc
Confidence 23455 999999998652 35578888876 8999999999999998 34 3479999874211 1 1
Q ss_pred c----ccc-ccceEE---EecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHH
Q 017726 186 R----MDE-WGIDVA---LTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLY 257 (367)
Q Consensus 186 ~----~~~-~~~d~~---~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (367)
. +.. .+.|.+ +-|.||.+++....+++-++..+ +...+...+..- ...+|+...++
T Consensus 344 ~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~v--------------d~~~~n~a~~m~--~STSPsY~LmA 407 (713)
T PRK15399 344 QGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGEY--------------DEETFNEAFMMH--TSTSPSYPIVA 407 (713)
T ss_pred CCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCCC--------------CHHHHHHHHHHH--cCCCcHHHHHH
Confidence 1 111 135666 88999999988777888664421 111111222211 13368899999
Q ss_pred HHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHc
Q 017726 258 GLRAALDLIFE-EGLENVIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 258 al~~al~~~~~-~g~~~~~~~~~~~~~~l~~~L~~~ 292 (367)
++..+.+.+.. .| ++..++..+.+..+++.|.+.
T Consensus 408 SLD~a~~~m~~~~G-~~l~~~~i~~a~~fR~~l~~~ 442 (713)
T PRK15399 408 SVETAAAMLRGNPG-KRLINRSVERALHFRKEVQRL 442 (713)
T ss_pred HHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhc
Confidence 99999999885 54 667788888888899888875
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.7e-14 Score=131.05 Aligned_cols=310 Identities=12% Similarity=0.067 Sum_probs=191.0
Q ss_pred hHHHHHHHccCCCC--C--CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC-------CC-CCeEE
Q 017726 21 PDQVIRAMNRNNED--Y--RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-------SP-GDRII 88 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~--~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~-------~~-gd~vl 88 (367)
.+++.+++.++... + ......+...++.+++.+.+... .+.+.|++||++|++.++.... .+ ..+|+
T Consensus 62 ~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii 140 (429)
T PRK06173 62 HPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILPPS-LNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFA 140 (429)
T ss_pred CHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 45666666664332 1 11112345567777777776422 2469999999999999886421 12 35688
Q ss_pred EEeCCcchHHHHHHHH-------HhC-----CceEEEeCCCCC------CCCHHHHHHHHhccCCCCccEEEEEec-CCC
Q 017726 89 SFLIGQFSLLWIDQQQ-------RLN-----FNVDVVESDWGE------GAKLDVLASKLAADTAHTIKAICIVHN-ETA 149 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~-------~~g-----~~~~~v~~~~~~------~~d~e~l~~~i~~~~~~~~~lv~~~~~-~n~ 149 (367)
....+|++..+..... ..+ ..+..+|.+... .-+++.+++.+.++. +++.+|++... ...
T Consensus 141 ~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~-~~iAAvi~EPi~qg~ 219 (429)
T PRK06173 141 TIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQKG-DEIAALILEPVVQGA 219 (429)
T ss_pred EECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhCC-CcEEEEEEcchhhcc
Confidence 8888888853221110 000 012233322110 013566778886543 56788888875 777
Q ss_pred cccccc----HHHHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCC-CcceeeeeCHHHH
Q 017726 150 TGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKAL 219 (367)
Q Consensus 150 tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~ 219 (367)
.|.+.+ +++++++|++ +|+++|+|+++...... ........|+++ .+|.++|. ..++.+++++++.
T Consensus 220 gG~~~~~~~yl~~l~~lc~~--~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~gG~~p~~a~~~~~~i~ 295 (429)
T PRK06173 220 GGMYFYSPTYLVKARELCDQ--YGVLLIFDEIATGFGRTGKLFALEHAGVVPDIMC--IGKALTGGYLTLSATITTEAIA 295 (429)
T ss_pred CCcccCCHHHHHHHHHHHHH--cCCeEEecchhcCCCcCCcchHHHhcCCCCCEEE--eehhhhCCccccceEEecHHHH
Confidence 787754 7789999999 99999999998532211 122233578887 58988665 2468888999987
Q ss_pred HHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCcccc
Q 017726 220 EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCT 298 (367)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 298 (367)
+.+.......+ ..++ .+..+...+++..++++.+.+++ ..++..++.++|++.|+++ +++.+.
T Consensus 296 ~~~~~~~~~~~-----------~~~~--T~~g~p~~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~L~~~~~~~~v~ 359 (429)
T PRK06173 296 QTICSGEAKCF-----------MHGP--TFMANPLACAIAAESIRLLLESP---WQQNIQRIEAQLKQELAPAAEFDSVA 359 (429)
T ss_pred HHHhcCCCCcc-----------ccCC--CCCcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHhhcCCCee
Confidence 76642111000 0121 23456777788888888887764 3567888889999999875 554332
Q ss_pred CCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
.-. ..+.++.+.+.+..+...+.+.|.++ ||.+.+. ++.+|+.+.-..+++++.
T Consensus 360 ~vR--g~Gl~~~iel~~~~~~~~i~~~l~e~-Gi~v~~~-----g~~l~~~Ppl~it~~ei~ 413 (429)
T PRK06173 360 EVR--VLGAIGVVEMKEPVNMATLQPRFVEH-GIWVRPF-----GKLVYIMPPFIISPDELS 413 (429)
T ss_pred eee--ccceEEEEEeCCcccHHHHHHHHHHC-CeEEEec-----CCEEEEeCCccCCHHHHH
Confidence 110 13446666664433456788888765 9998652 358999887777765544
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-14 Score=132.39 Aligned_cols=298 Identities=14% Similarity=0.100 Sum_probs=178.0
Q ss_pred hHHHHHHHccCCCC--CCCC-cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC------CCC-CeEEEE
Q 017726 21 PDQVIRAMNRNNED--YRSP-AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL------SPG-DRIISF 90 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~------~~g-d~vl~~ 90 (367)
.+++.+++.++... +... ...+...++.+.+.+..+ .+.++|++||++|++.++.... .+| ++|++.
T Consensus 54 ~p~v~~a~~~q~~~~~~~~~~~~~~~~~~la~~l~~~~~---~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~ 130 (395)
T PRK03715 54 NPGMVEALAAQAEKLINPSPAFYNEPMAKLAGLLTQHSC---FDKVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITF 130 (395)
T ss_pred CHHHHHHHHHHHHhcccccccccCHHHHHHHHHHhhccC---CCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEE
Confidence 45666666654322 1111 112333444444444322 2459999999999999887542 123 568888
Q ss_pred eCCcchHHHHHHHHHhCCceE---EEeCCCCC----CCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----HHHH
Q 017726 91 LIGQFSLLWIDQQQRLNFNVD---VVESDWGE----GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKV 159 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~---~v~~~~~~----~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~~i 159 (367)
+..|++..... ....+.... ..|...+. ..|++++++++. +++++|++...++..|.+.| ++++
T Consensus 131 ~~~yHG~t~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~aavi~Epv~~~gG~~~~~~~~l~~l 205 (395)
T PRK03715 131 DHSFHGRTLAT-MSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLIT----DKTVAVMLEPVQGEGGVIPATREFMQQL 205 (395)
T ss_pred CCCcCCChHHH-HhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcC----CCceEEEEeCCcCCCCCccCCHHHHHHH
Confidence 88888764322 222232111 11111111 137889998886 35689999988888888876 8999
Q ss_pred HHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeech
Q 017726 160 RKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDW 234 (367)
Q Consensus 160 ~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 234 (367)
+++|++ +|+++|+|++++..... ........|++++ +|.+++...+|.+++++++.. +.. ..
T Consensus 206 ~~l~~~--~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t~--gK~lg~G~p~~av~~~~~i~~-~~~----~~---- 272 (395)
T PRK03715 206 RALTKQ--HGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTL--GKGIGGGVPLAALLAKAEVAV-FEA----GD---- 272 (395)
T ss_pred HHHHHH--cCCEEEEeccccCCCCCcchhhHhhcCCCCceeee--hhhhhCCcceEEEEEcccccc-ccC----CC----
Confidence 999999 99999999998732111 1222234687655 699976544688888888742 111 00
Q ss_pred HHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCCceEEEE
Q 017726 235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVI 312 (367)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~ 312 (367)
..+ .++.+...+++..++++.+.+++ +.++..++.++|++.|+++ ...+ ..-. -.+.++.+.
T Consensus 273 -------~~~---T~~g~pl~~aaala~L~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~i-~~vr--G~Glm~~i~ 336 (395)
T PRK03715 273 -------QGG---TYNGNPLMTAVGVAVISQLLAPG---FLEGVRARGEYLKEKLLELSEERGL-EGER--GEGLLRALL 336 (395)
T ss_pred -------cCC---CCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHhhcCCc-CeEE--cceeEEEEE
Confidence 012 22455666777788888887653 5667888888888888775 1221 1100 134566666
Q ss_pred cCCCCCHHHHHHHHHh--hCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 313 VPSHINSSEIVRRAWQ--RYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 313 ~~~~~~~~~l~~~L~~--~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
+.+. ....+.+.+.+ +.||.+... .++.+|+++....+++++.
T Consensus 337 l~~~-~~~~~~~~~~~~~~~Gi~~~~~----~~~~lR~~p~l~~t~~ei~ 381 (395)
T PRK03715 337 LGKD-IGPQIVEKARDMQPDGLLLNAP----RPNLLRFMPALNVTTEEID 381 (395)
T ss_pred ecCc-hHHHHHHHHHhccCCCEEEeec----CCCEEEEeCCcccCHHHHH
Confidence 6321 23344444432 238887642 1367999988877766544
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-14 Score=132.66 Aligned_cols=309 Identities=15% Similarity=0.069 Sum_probs=190.2
Q ss_pred hHHHHHHHccCCCC---CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--C---CCCCeEEEEeC
Q 017726 21 PDQVIRAMNRNNED---YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--L---SPGDRIISFLI 92 (367)
Q Consensus 21 ~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~---~~gd~vl~~~~ 92 (367)
++++.+++.++... ...+...+...++.++|.+.....- +.+.|++||++|+..++... . ....+|+....
T Consensus 93 hp~v~~Av~~ql~~l~~~~~~~~~~~~~~lAe~L~~~~p~~~-~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~ 171 (442)
T TIGR03372 93 NPNVIAAVENQLAKQPLHSQELLDPLRALLAKTLAALTPGKL-KYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASG 171 (442)
T ss_pred CHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHhCCCCc-CEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECC
Confidence 45566666654321 1112223555677777777764332 35899999999999988642 1 12457888888
Q ss_pred CcchHHHHHHHHHhC------------CceEEEeCCCCCCCCHHHHHHHHhc---cCCCCccEEEEEecCCCcccccc--
Q 017726 93 GQFSLLWIDQQQRLN------------FNVDVVESDWGEGAKLDVLASKLAA---DTAHTIKAICIVHNETATGVTNN-- 155 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~~~lv~~~~~~n~tG~~~~-- 155 (367)
+|++........ .+ ..+..+|.+ |.+++++.+++ +. .++.+|++.......|.+.|
T Consensus 172 ~yHG~t~~~ls~-t~~~~~~~~~~p~~~~~~~~p~~-----d~~~~~~~l~~~~~~~-~~vAavIvEpv~g~gG~~~p~~ 244 (442)
T TIGR03372 172 AFHGKSLGALSA-TAKPAFRKPFMPLLPGFHHVAFG-----DIEAMLKALNECKKTG-DDVAAIILEPIQGEGGVILPPE 244 (442)
T ss_pred CccCCCHHHhhc-cCCcccCCCCCCCCCCCEEeCCC-----CHHHHHHHHHHHhcCC-CcEEEEEEeCccCCCCcccCCH
Confidence 888864211111 11 112223322 67777777753 22 46788899988888898887
Q ss_pred --HHHHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCC-CcceeeeeCHHHHHHhccCCC
Q 017726 156 --LSKVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKS 227 (367)
Q Consensus 156 --~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~~~~~ 227 (367)
+++++++|++ +|+++|+||++...... +.......|+++ .+|.+++. ..+|.+++++++.+.+...
T Consensus 245 ~yl~~l~~lc~~--~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt--~gK~lg~G~~Pigavv~~~~i~~~~~~~-- 318 (442)
T TIGR03372 245 GYLPAVRALCDE--FGALLILDEVQTGMGRTGKMFACEHEGVQPDILC--LAKALGGGVMPIGATIATEAVFSVLFDN-- 318 (442)
T ss_pred HHHHHHHHHHHH--cCCEEEEeecccCCCccccchhhhhcCCCCCeee--ehhhhcCCcccceEEEecHHHHHhhhcc--
Confidence 8999999999 99999999998532211 112223478876 58999764 2468888898887766311
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCc-cccCCCccC
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLK-NCTQKEEWF 304 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~-~~~~~~~~~ 304 (367)
.+.. ++ .+..+...+++..++|+.+++++ +.++.++..+++++.|+++ .++ .+..-. -
T Consensus 319 -~~~~-----------~~--T~~gnp~~~Aaa~a~L~~i~~~~---l~~~~~~~G~~l~~~L~~l~~~~~~~i~~vR--G 379 (442)
T TIGR03372 319 -PFLH-----------TT--TFGGNPLACAAALATINELLEKN---LPAQAAIKGDFLLDGFQQLAAEYPDLIIEAR--G 379 (442)
T ss_pred -Cccc-----------cC--CCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHhCCCceEEEe--c
Confidence 0000 11 33456667777888888887765 3446677788888888775 232 222111 1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH--Hhhhh
Q 017726 305 SDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN--FQLLF 365 (367)
Q Consensus 305 ~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~--~~~l~ 365 (367)
.+.++.+.+.+......+++.|.++ ||.+..... .++.+|+.+....+++|++ ..+|+
T Consensus 380 ~Gl~~giel~~~~~~~~i~~~l~~~-Gvl~~~~~~--~~~~lr~~Ppl~~t~~~id~~~~~l~ 439 (442)
T TIGR03372 380 KGLLMAIEFRDNEIGYAFAKELFQQ-NILVAGTLN--NAKSIRIEPPLTITIEQCALVIKAAK 439 (442)
T ss_pred ceEEEEEEeCChHHHHHHHHHHHHC-CcEEeecCC--CCCEEEEECCcccCHHHHHHHHHHHH
Confidence 3445666663332345788888764 999864321 2367999887766665444 44443
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.70 E-value=8e-15 Score=126.89 Aligned_cols=294 Identities=13% Similarity=0.085 Sum_probs=158.5
Q ss_pred CCC-cHHHHHHHHHHHHHHHhcCCCCceEEecCChh-HHHHHHHH-cc----C--------CCCCeEEEEeCCcchHHHH
Q 017726 36 RSP-AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGT-GAWESALT-NT----L--------SPGDRIISFLIGQFSLLWI 100 (367)
Q Consensus 36 ~~~-~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt-~al~~~~~-~~----~--------~~gd~vl~~~~~~~~~~~~ 100 (367)
+.| +..+...|+|+.+++++|++.++ +++.+|++ ..+.-++. ++ . .+.-+.|.+.|+|--+ +
T Consensus 62 RNY~G~l~Gipe~r~l~a~llgv~~~~-viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRH-F- 138 (425)
T PF12897_consen 62 RNYPGGLDGIPEARELFAELLGVPPEN-VIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRH-F- 138 (425)
T ss_dssp TSS-S-SS--HHHHHHHHHHHTS-GGG-EEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHH-H-
T ss_pred cCCCCccCChHHHHHHHHHHhCCCHHH-EEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHH-H-
Confidence 455 66788999999999999999876 66655555 33333332 21 1 1234788899987544 3
Q ss_pred HHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEE-ecCCCccccccHHHHHHHHHh--cCCCcEEEEeee
Q 017726 101 DQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIV-HNETATGVTNNLSKVRKLLDE--YRHPALFLVDGV 177 (367)
Q Consensus 101 ~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~-~~~n~tG~~~~~~~i~~~~~~--~~~~~~vi~D~~ 177 (367)
.+++.+|++.+.||+.++| +|.|.+++++.++ +.+|.++++ .-+||||.+++-+.+.+++.- ...+.-|+.|.+
T Consensus 139 ai~E~~Giemi~VpM~~dG-PDmD~Ve~LV~~D--~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNA 215 (425)
T PF12897_consen 139 AITEHFGIEMIPVPMTEDG-PDMDMVEELVAED--PSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNA 215 (425)
T ss_dssp HHHHHCT-EEEEEEEETTE-E-HHHHHHHTHTS--TTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-T
T ss_pred HHHHhhCcEEEecCCCCCC-CCHHHHHHHHhcC--CccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecC
Confidence 6799999999999999777 6999999999765 478888554 566999999998888888753 347899999999
Q ss_pred eccCcee--e------cc-------ccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhh
Q 017726 178 SSICAID--F------RM-------DEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYN 242 (367)
Q Consensus 178 ~~~~~~~--~------~~-------~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (367)
|..=++- . +. .+.+..++..|+||.-....|++++..+++-++.+.....
T Consensus 216 Y~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaGva~~aaS~~Nl~~~~~~~~--------------- 280 (425)
T PF12897_consen 216 YAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGAGVAFFAASEANLAWIKKHLS--------------- 280 (425)
T ss_dssp TTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHHHHH---------------
T ss_pred ceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccccCCcceeeeecCHHHHHHHHHHhc---------------
Confidence 8764441 1 11 1224568888999987667888999999998887764311
Q ss_pred cCCccCCCCcHHHHHHHHHHHHHHH-Hh-ChHHHHHH--------HHHHHHHHHHHHH-HcC-CccccCCCccCCCceEE
Q 017726 243 LGTFWPYTPSIQLLYGLRAALDLIF-EE-GLENVIER--------HRRLGKATRLAVE-AWG-LKNCTQKEEWFSDTVTA 310 (367)
Q Consensus 243 ~~~~~~~~~~~~~~~al~~al~~~~-~~-g~~~~~~~--------~~~~~~~l~~~L~-~~g-~~~~~~~~~~~~~~~~~ 310 (367)
..+ . .+.-...+. -.+.+. .+ |+++.+++ .....+.|.+.|. ..| ..|..| .++++++
T Consensus 281 ~~t--I-gpdKvNQLR---Hvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P----~GGYFIs 350 (425)
T PF12897_consen 281 VQT--I-GPDKVNQLR---HVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKP----KGGYFIS 350 (425)
T ss_dssp HH---S----HHHHHH---HHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE-------SBSS-EE
T ss_pred Cce--e-CccHHHHHH---HHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCC----CCceEEE
Confidence 000 0 022111111 111221 12 22222222 2222333344444 333 366666 6788999
Q ss_pred EEcCCCCCHHHHHHHHHhhCCeEEcc-CCC-CC----CCcEEEEeecC-CCCHHHHHHh
Q 017726 311 VIVPSHINSSEIVRRAWQRYNLSLGL-GLN-KV----AGKVFRIGHLG-HLNEVMFNFQ 362 (367)
Q Consensus 311 ~~~~~~~~~~~l~~~L~~~~gv~v~~-g~~-~~----~~~~iRi~~~~-~~~~~~~~~~ 362 (367)
+.+.++ .++.+.+..+ +.||.+.+ |.. |. .+..|||++.. ..++.+...+
T Consensus 351 ld~~~G-~AkrvV~lak-eAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~ 407 (425)
T PF12897_consen 351 LDVLDG-TAKRVVELAK-EAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMD 407 (425)
T ss_dssp EEESTT--HHHHHHHHH-HTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHH
T ss_pred EecCCC-hHHHHHHHHH-HhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHH
Confidence 999765 5677777664 56999987 532 11 24679998643 3444444433
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.6e-15 Score=123.24 Aligned_cols=282 Identities=15% Similarity=0.114 Sum_probs=188.7
Q ss_pred HHHHHHHccCCCC--C----CCCcHHHH-HHHHHHHHHHHhcCCCCce-EEecCChhHHHHHHHHccCCCCCeEEEEeCC
Q 017726 22 DQVIRAMNRNNED--Y----RSPAVPAL-TKTLLEDIKKIFKTTSGTP-FLIPTTGTGAWESALTNTLSPGDRIISFLIG 93 (367)
Q Consensus 22 ~~v~~a~~~~~~~--~----~~~~~~~~-~~~~~~~la~~~~~~~~~~-v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~ 93 (367)
..|++++++.-.. | .+|++.+. .+.+.+-.|+.+|.+.+-. .-+ -|||+|+..++..++.|||+++.....
T Consensus 38 ~kVL~AF~~~rvs~~hf~~stGYGydD~GRdtLe~vyA~vf~aE~a~VRpq~-isGTHAI~~aLfg~LRpgDell~i~G~ 116 (416)
T COG4100 38 KKVLEAFRHHRVSESHFTGSTGYGYDDLGRDTLERVYAQVFGAEAALVRPQI-ISGTHAIACALFGILRPGDELLYITGS 116 (416)
T ss_pred HHHHHHHHhcccchhccCCCCCCCccccchhHHHHHHHHHhccccceeeeee-ecchhHHHHHHHhccCCCCeEEEecCC
Confidence 4678888774321 2 24555443 5667888899999986421 223 357999999999999999999876553
Q ss_pred cchHHH---------HHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEe----cCCCccccccHHHHH
Q 017726 94 QFSLLW---------IDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVH----NETATGVTNNLSKVR 160 (367)
Q Consensus 94 ~~~~~~---------~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~----~~n~tG~~~~~~~i~ 160 (367)
-+...- ...++..|++++.+++..++.+|.+.+...++ +++|+|.+.- ..-|+=.+.+++++.
T Consensus 117 PYDTLeevIG~rg~~~gSL~dfgi~Y~~v~Lt~~gkiD~~~v~~~i~----~~tkli~IQRS~GY~~RpS~~I~eI~~~i 192 (416)
T COG4100 117 PYDTLEEVIGLRGEGQGSLKDFGIKYKAVPLTADGKIDIQAVKTAIS----DRTKLIGIQRSKGYAWRPSLSIAEIEEMI 192 (416)
T ss_pred cchhHHHHhccCCCCcccHHHhCcceeecccccCCcccHHHHHHhcC----ccceEEEEEeccCcCCCCcccHHHHHHHH
Confidence 232211 11245578999999999999999999999999 5779997752 223444455788889
Q ss_pred HHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCC--cceeeeeCHHHHHHhccCCCCceeechHHHH
Q 017726 161 KLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPT--GMGIVCASPKALEASKTAKSVRVFFDWKDYI 238 (367)
Q Consensus 161 ~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~--g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (367)
++.|+.+.++++++|.||+-+.........|+|++.+|+-|.-+|.. -.||+.++.+++++..-....+...
T Consensus 193 ~~vk~inpn~ivFVDNCYGEFvE~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~~yRlTaPGIG------ 266 (416)
T COG4100 193 TFVKEINPNVIVFVDNCYGEFVEEKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAAAYRLTAPGIG------ 266 (416)
T ss_pred HHHHhcCCCEEEEEeccchhhhhccCccccchhhhccceeeCCCCceeeccceeechHHHHHhhceeeecCCcc------
Confidence 99998778999999999998777667777899999999999876541 1399999999988765332111000
Q ss_pred HHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCC
Q 017726 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHIN 318 (367)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (367)
-+.| .....+..+...+-+ -.++..+..+-+......|+++|+++.+...+.+...+..+++++...
T Consensus 267 --~e~G------at~~~l~~myqGlFl-----APhvv~qa~Kga~fta~~le~lg~~~~P~~~~kRtDlIQavkf~~~eK 333 (416)
T COG4100 267 --REGG------ATLYSLREMYQGLFL-----APHVVSQAVKGAHFTARFLEKLGFPVNPKYDAKRTDLIQAVKFGSKEK 333 (416)
T ss_pred --cccc------ccHHHHHHHHhhhcc-----chHHHHHHhhhhHHHHHHHHHcCCCCCCcccccccchhhheecCCHHH
Confidence 0111 111111111111111 234555566667777778888999887765555777677788864433
Q ss_pred HHHHHHHHH
Q 017726 319 SSEIVRRAW 327 (367)
Q Consensus 319 ~~~l~~~L~ 327 (367)
.-.||+.+.
T Consensus 334 mIaFcqaiQ 342 (416)
T COG4100 334 MIAFCQAIQ 342 (416)
T ss_pred HHHHHHHHh
Confidence 445666664
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.7e-14 Score=129.37 Aligned_cols=310 Identities=20% Similarity=0.180 Sum_probs=183.1
Q ss_pred hHHHHHHHccCCCC--C--CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCc
Q 017726 21 PDQVIRAMNRNNED--Y--RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQ 94 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~--~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~ 94 (367)
++.+.+++.++... + ......+...++-+++.+.+.....+.+.|++||++|+..++... .....+|+....+|
T Consensus 58 ~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~y 137 (425)
T PRK07495 58 HPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGF 137 (425)
T ss_pred CHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCc
Confidence 44556665554332 1 111223445667777777764322246999999999999988642 23345788888888
Q ss_pred chHHHHHHHH-------HhC-----CceEEEeCCCCC-CCC----HHHHHHHHhcc-CCCCccEEEEEecCCCccccc-c
Q 017726 95 FSLLWIDQQQ-------RLN-----FNVDVVESDWGE-GAK----LDVLASKLAAD-TAHTIKAICIVHNETATGVTN-N 155 (367)
Q Consensus 95 ~~~~~~~~~~-------~~g-----~~~~~v~~~~~~-~~d----~e~l~~~i~~~-~~~~~~lv~~~~~~n~tG~~~-~ 155 (367)
++.......- ..+ ..+..+|.+.+. ..+ ++++++.+.+. ..+++++|++......+|.+. |
T Consensus 138 HG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~ 217 (425)
T PRK07495 138 HGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAP 217 (425)
T ss_pred CCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcccccccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCC
Confidence 8754211110 001 123344443211 122 44557666531 114678888887776678554 3
Q ss_pred ---HHHHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCC
Q 017726 156 ---LSKVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS 227 (367)
Q Consensus 156 ---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~ 227 (367)
+++++++|++ +|+++|+|+++...... ........|+ .+.+|.+++...+|++++++++.+.+.....
T Consensus 218 ~~~l~~l~~l~~~--~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi--~tlsK~l~~G~pigav~~~~~i~~~~~~~~~ 293 (425)
T PRK07495 218 AAFMKALRELCDQ--HGILLIADEVQTGFARTGKLFAMEHHEVAADL--TTMAKGLAGGFPLAAVTGRAEIMDAPGPGGL 293 (425)
T ss_pred HHHHHHHHHHHHH--cCCEEEEechhhcCCcCCCceeecccCCCCCE--EeehhhhcCCccceEEEEcHHHHhccCCCCc
Confidence 7889999999 99999999998633221 1111223455 4558988765557999999998776653210
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCC
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFS 305 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~ 305 (367)
+ ..+..+...+++..++++.+.+.+ ..++..++.+++++.|+++ .++.+..-. ..
T Consensus 294 ----------------~--~T~~~~pl~~aaa~a~l~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr--G~ 350 (425)
T PRK07495 294 ----------------G--GTYGGNPLGIAAAHAVLDVIEEED---LCERANQLGNRLKQRLASLRETVPEIADIR--GP 350 (425)
T ss_pred ----------------C--CCCCCCHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHHHHHHHHHhhCCCeeeee--cC
Confidence 1 133466666677778888887654 4556777888888888775 233222111 12
Q ss_pred CceEEEEcCCCC----C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 306 DTVTAVIVPSHI----N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 306 ~~~~~~~~~~~~----~---~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
+.++++.+.+.. + ...+.+.+.+ .|+.+... .. .++.+|+.+....++++++
T Consensus 351 Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~-g~-~~~~~r~~Ppl~it~~~id 409 (425)
T PRK07495 351 GFMNAVEFNDADSGLPSAEFANRVRLKALE-KGLILLTC-GV-HGNVIRFLAPITIQDDVFA 409 (425)
T ss_pred ceEEEEEEecCCCCCccHHHHHHHHHHHHH-CCeEEeec-CC-CCCEEEEeCCCccCHHHHH
Confidence 456677662211 1 2346666665 59988642 11 2478999977776665444
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.4e-15 Score=124.59 Aligned_cols=323 Identities=16% Similarity=0.173 Sum_probs=209.5
Q ss_pred CcccccCCCCCChHHHHHHHccCCCC--------CCCC---cHHH-HHHHHHHHHHHHhcCCCCceE--EecCChhHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNED--------YRSP---AVPA-LTKTLLEDIKKIFKTTSGTPF--LIPTTGTGAWE 74 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~--------~~~~---~~~~-~~~~~~~~la~~~~~~~~~~v--~~~~ggt~al~ 74 (367)
+-+.++|.---++.+|++++-....+ .++| .+.+ +..=++++..+.|+++++.+- +-.=||+-|+.
T Consensus 41 ~gieLIaSENFts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANf 120 (477)
T KOG2467|consen 41 RGIELIASENFTSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANF 120 (477)
T ss_pred cceeEeecccchHHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhh
Confidence 44566777777888899888764332 2223 2333 333356777788999865433 33347889999
Q ss_pred HHHHccCCCCCeEEEEeCCcchHH---HHHHHHHh-CCceE----EEeCC-CCCCCCHHHHHHHHhccCCCCccEEEEEe
Q 017726 75 SALTNTLSPGDRIISFLIGQFSLL---WIDQQQRL-NFNVD----VVESD-WGEGAKLDVLASKLAADTAHTIKAICIVH 145 (367)
Q Consensus 75 ~~~~~~~~~gd~vl~~~~~~~~~~---~~~~~~~~-g~~~~----~v~~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~ 145 (367)
.+-.+++.|++++--.+.++.++. +..-.+.- ...+. ...++ ..+-+|.|.||+.... -|||+|+.-.
T Consensus 121 avYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~---frPk~iiaG~ 197 (477)
T KOG2467|consen 121 AVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATL---FRPKLIIAGT 197 (477)
T ss_pred HHHhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCCceehHHHHHHHHh---cCCcEEEecc
Confidence 999999999999877666444432 11000110 11111 11223 3467899999988664 4789887643
Q ss_pred cCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccC-----ceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHH
Q 017726 146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSIC-----AIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALE 220 (367)
Q Consensus 146 ~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~-----~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~ 220 (367)
+..-...|-++++++|++ .|+++++|.+|-.| ..+.+++ .+|+++.+.||.+.||+| |++..++...
T Consensus 198 --SaY~R~~DYaR~R~Iad~--~gA~Lm~DMAHISgLVAA~vipsPFe--y~DiVTTTTHKsLRGPRg-~mIFyRkGvk- 269 (477)
T KOG2467|consen 198 --SAYSRLIDYARFRKIADK--VGAYLMADMAHISGLVAAGVIPSPFE--YCDIVTTTTHKSLRGPRG-AMIFYRKGVK- 269 (477)
T ss_pred --ccchhhccHHHHHHHHHh--cCceeehhhhhHHHHHhcccCCCccc--ccceeeccccccccCCcc-eeEEEeccCC-
Confidence 234456789999999999 99999999998543 3344554 689999999999999997 8888776542
Q ss_pred HhccCCCCceeechHHHHH-----HhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCc
Q 017726 221 ASKTAKSVRVFFDWKDYIK-----FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLK 295 (367)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~ 295 (367)
...+........|+.+... .++ |+ |.-..+.++..||+.......++-.++..+|++.|.+.|.++|++
T Consensus 270 ~~~~k~g~~i~ydlE~kINfaVFP~lQ-GG-----PHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~Gy~ 343 (477)
T KOG2467|consen 270 SIKPKQGKEILYDLEDKINFAVFPGLQ-GG-----PHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISRGYK 343 (477)
T ss_pred cCCCCCCCcceechhhhhhhhcccccc-CC-----CCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHcCce
Confidence 2221122222333322211 122 33 444455888999998887778888999999999999999999999
Q ss_pred cccCCCccCCCceEEEEc-CCCCCHHHHHHHHHhhCCeEEc----cC-CCCCCCcEEEEeecC
Q 017726 296 NCTQKEEWFSDTVTAVIV-PSHINSSEIVRRAWQRYNLSLG----LG-LNKVAGKVFRIGHLG 352 (367)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~~gv~v~----~g-~~~~~~~~iRi~~~~ 352 (367)
+++... .++++.+++ |.+++...+ ++.++..+|.+- +| ...+.++.+|||.-+
T Consensus 344 lvtgGT---DnHlvLvDLr~~G~dGarv-E~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPA 402 (477)
T KOG2467|consen 344 LVTGGT---DNHLVLVDLRPKGVDGARV-EKVLELCHIALNKNTVPGDKSALSPGGIRIGTPA 402 (477)
T ss_pred EecCCc---cceEEEEeccccCCchHHH-HHHHHHhhhhhcCCcCCCCccccCCCceeccchh
Confidence 988643 344555555 457776544 444455566653 33 224556779998744
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.5e-14 Score=130.17 Aligned_cols=291 Identities=14% Similarity=0.061 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC------C--CCCeEEEEeCCcchHHHHHHHHHhC------
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL------S--PGDRIISFLIGQFSLLWIDQQQRLN------ 107 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~------~--~gd~vl~~~~~~~~~~~~~~~~~~g------ 107 (367)
+...++.+++.++...+ .+.+.|++||++|++.++.... . ...+|+....+|++....... ..|
T Consensus 95 ~~~~~la~~l~~~~p~~-~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s-~~~~~~~~~ 172 (460)
T PRK06541 95 PPAIELAERLAALAPGD-LNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALA-ITGLPAFKA 172 (460)
T ss_pred HHHHHHHHHHHHhCCCC-cCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhc-CcCChhhcc
Confidence 44567777777775432 2469999999999999886321 1 246788888888875421111 111
Q ss_pred ------CceEEEeCCCCCC-----CC--------HHHHHHHHhccCCCCccEEEEEecCCCcccccc----HHHHHHHHH
Q 017726 108 ------FNVDVVESDWGEG-----AK--------LDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLD 164 (367)
Q Consensus 108 ------~~~~~v~~~~~~~-----~d--------~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~~i~~~~~ 164 (367)
..+..++.+.... -+ ++.+++.++.....++.+|++....++.|.+.+ +++++++|+
T Consensus 173 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~ 252 (460)
T PRK06541 173 PFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICD 252 (460)
T ss_pred ccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHH
Confidence 1123333321110 11 366777776422135677777777899999987 899999999
Q ss_pred hcCCCcEEEEeeee-ccCcee----eccccccceEEEecCCCcccCCC-cceeeeeCHHHHHHhccCCCCceeechHHHH
Q 017726 165 EYRHPALFLVDGVS-SICAID----FRMDEWGIDVALTGSQKALSLPT-GMGIVCASPKALEASKTAKSVRVFFDWKDYI 238 (367)
Q Consensus 165 ~~~~~~~vi~D~~~-~~~~~~----~~~~~~~~d~~~~s~~K~~~g~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (367)
+ +|+++|+||++ ++|... ........|+++ .+|.+++.. .+|.+++++++.+.+.... ..+..
T Consensus 253 ~--~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt--~gK~l~~G~~pigav~~~~~i~~~~~~~~-~~~~~------ 321 (460)
T PRK06541 253 R--YDVLLVSDEVICAFGRLGEMFGCERFGYVPDIIT--CAKGITSGYSPLGAMIASDRLFEPFLDGP-TMFLH------ 321 (460)
T ss_pred H--cCCEEEEechhhCCCcCchhhhhhhcCCCCCEEE--ecccccCCccceeEEEEcHHHHHHhhcCC-Ccccc------
Confidence 9 99999999998 443211 111122468776 589887542 4799999999987765321 11100
Q ss_pred HHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCC-
Q 017726 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSH- 316 (367)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~- 316 (367)
.+ .+..+...+++..++++.+.+.+ ..++..++.++|.+.|+++ ...++..-. ..+.++.+.+.++
T Consensus 322 ----~~---T~~gnp~~~aaala~l~~l~~~~---~~~~~~~~g~~l~~~L~~l~~~~~v~~vr--g~Gl~~~ie~~~~~ 389 (460)
T PRK06541 322 ----GY---TFGGHPVSAAVALANLDIFEREG---LLDHVRDNEPAFRATLEKLLDLPIVGDVR--GDGYFYGIELVKDK 389 (460)
T ss_pred ----CC---CCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHhhcCCCeEEEE--ecceEEEEEEecCc
Confidence 11 23355555666677777776654 4568888999999999886 433322100 1233444544211
Q ss_pred -----CC-------H-HHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 317 -----IN-------S-SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 317 -----~~-------~-~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
.+ . ..+.+.|.+ +||.+.+.. .....+|+++....+++|+.
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~--~g~~~lrl~Ppl~~t~~~id 443 (460)
T PRK06541 390 ATKETFTDDESERLLRGFLSPALFE-AGLYCRADD--RGDPVVQLAPPLISGQEEFD 443 (460)
T ss_pred ccccCCcchhhhhhHHHHHHHHHHh-CCeEEEecC--CCCCEEEEECCCCCCHHHHH
Confidence 00 0 245567765 499987621 12367999988767665544
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.7e-14 Score=129.69 Aligned_cols=303 Identities=16% Similarity=0.102 Sum_probs=178.1
Q ss_pred hHHHHHHHccCCCC--CCCC-cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC------C--C-CCeEE
Q 017726 21 PDQVIRAMNRNNED--YRSP-AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL------S--P-GDRII 88 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~------~--~-gd~vl 88 (367)
++.+.+++.++... +... ...+...++.++|.+.... .+.+.|++||++|++.++.... . + ..+|+
T Consensus 58 ~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~--~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii 135 (408)
T PRK04612 58 DPDLVAALTEQAGKLWHTSNVFYSAPPLKLAEELVTASRF--AEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIV 135 (408)
T ss_pred CHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhCCC--CCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEE
Confidence 45566666654332 1111 1223445666767666532 2469999999999999886421 1 1 23688
Q ss_pred EEeCCcchHHHHHHHHHhCCceEE---EeCCCC----CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc-----H
Q 017726 89 SFLIGQFSLLWIDQQQRLNFNVDV---VESDWG----EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN-----L 156 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~----~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~-----~ 156 (367)
....+|++....... ..+..... -+...+ ...|++.+++.+.. .++. .++..|.+++|-+.+ +
T Consensus 136 ~~~~~yHG~t~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~a-avi~eP~~~~gg~~~~~~~~l 210 (408)
T PRK04612 136 TFRGSFHGRTLAAVT-ATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAG---GDVA-AVMLEPIQGEGGVMPAAPGFL 210 (408)
T ss_pred EECCCcCCccHHHHH-hcCCcccccCCCCCCCCceEcCCCCHHHHHHhhCC---CCEE-EEEECCccCCCCCcCCCHHHH
Confidence 888888886422111 11111000 011111 01278889888853 2344 445555666665543 7
Q ss_pred HHHHHHHHhcCCCcEEEEeeeeccCceee---ccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeec
Q 017726 157 SKVRKLLDEYRHPALFLVDGVSSICAIDF---RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFD 233 (367)
Q Consensus 157 ~~i~~~~~~~~~~~~vi~D~~~~~~~~~~---~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 233 (367)
++|+++|++ +|+++|+|++++.....- .....+....+.+.+|.+++...+|++++++++.+.+.....
T Consensus 211 ~~l~~l~~~--~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~~K~l~~G~piga~~~~~~~~~~~~~~~~------ 282 (408)
T PRK04612 211 ARVRALCDQ--HDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLAKALGGGFPIGAMLAGPKVAETMQFGAH------ 282 (408)
T ss_pred HHHHHHHHH--cCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEEcchhcCCCceEEEEECHHHHhhhcCCCc------
Confidence 889999999 999999999986432211 111123344455668999755457998888887766643110
Q ss_pred hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCCceEEE
Q 017726 234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAV 311 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~ 311 (367)
.. .++.+...+.+..++++.+.++ ++.++.+++.+++.+.|+++ .+.++..-. -.+.++.+
T Consensus 283 ---------~~---t~~~~p~~~aaa~a~L~~~~~~---~l~~~~~~~g~~l~~~l~~l~~~~~~i~~vr--g~Gl~~~i 345 (408)
T PRK04612 283 ---------GT---TFGGNPLAAAVARVALRKLASP---QIAANVARQSAALRAGLEALNAEFGVFAQVR--GRGLMLGA 345 (408)
T ss_pred ---------CC---CCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhhCCCeeeee--ccceEEEE
Confidence 11 2345666777777788888765 45667888888888888875 233332211 12345555
Q ss_pred EcCCC--CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 312 IVPSH--INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 312 ~~~~~--~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
.+.+. ....++++.+.+ +||.+.+. ..+.+|+.+....+++|+.
T Consensus 346 ~~~~~~~~~a~~i~~~l~~-~Gvlv~~~----g~~~lRl~Ppl~it~eeid 391 (408)
T PRK04612 346 VLAPAHAGQAGAILDLAAE-HGLLLLQA----GPDVLRFVPALNLTDAELA 391 (408)
T ss_pred EecCchhhHHHHHHHHHHH-CCeEEeeC----CCCEEEEcCCccCCHHHHH
Confidence 54221 124567787765 59998652 2367999987777765543
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-14 Score=126.39 Aligned_cols=308 Identities=17% Similarity=0.132 Sum_probs=192.7
Q ss_pred hHHHHHHHccCCCCCCCCc-HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCcchH
Q 017726 21 PDQVIRAMNRNNEDYRSPA-VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQFSL 97 (367)
Q Consensus 21 ~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~~~~ 97 (367)
++.|.+++.+......++. +.+..-++-+.+.+.+..-+ .|-|++|||+|...+++.. ....|+|+.....|++.
T Consensus 71 ~p~V~~Av~~~l~~G~~fg~Pte~Ei~~Aell~~~~p~~e--~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~ 148 (432)
T COG0001 71 HPAVVEAVQEQLERGLSFGAPTELEVELAELLIERVPSIE--KVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGH 148 (432)
T ss_pred CHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCccc--EEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCC
Confidence 4556666666544333222 23555577777887776543 5999999999999988642 34567888888888886
Q ss_pred H-HHHHHHHhCC-----------------ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----
Q 017726 98 L-WIDQQQRLNF-----------------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---- 155 (367)
Q Consensus 98 ~-~~~~~~~~g~-----------------~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---- 155 (367)
. +.-.-...|. ....+|.+ |++.+++++++.+ ++..+|++.......|.+.|
T Consensus 149 ~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yN-----D~~al~~~~~~~g-~~IAaVIvEPv~gn~g~i~p~~~F 222 (432)
T COG0001 149 SDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYN-----DLEALEEAFEEYG-DDIAAVIVEPVAGNMGVVPPEPGF 222 (432)
T ss_pred ccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCC-----CHHHHHHHHHHcC-CcEEEEEeccccCCCCCCCCCHHH
Confidence 4 2111000111 12233333 8999999999875 57889999988888999887
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeeccCceee----ccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCcee
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSSICAIDF----RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF 231 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~----~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~ 231 (367)
++.++++|++ +|+++|.||....+..+. .......|+. +..|.++|...+|.+.++.++.+++.+.. .
T Consensus 223 l~~Lr~lt~e--~G~lLI~DEViTGFR~~~gGaq~~~gi~PDlt--tlGKiIGGGlP~ga~gGr~eiM~~~~p~g--~-- 294 (432)
T COG0001 223 LEGLRELTEE--HGALLIFDEVITGFRVALGGAQGYYGVEPDLT--TLGKIIGGGLPIGAFGGRAEIMEQLAPLG--P-- 294 (432)
T ss_pred HHHHHHHHHH--cCcEEEEecchhhcccCCcccccccCcCcchh--hhhhhhcCCcceeeeccHHHHHhhhCCCC--C--
Confidence 7789999999 999999999976443332 1112234554 45899988777899999999999777542 1
Q ss_pred echHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh-C-hHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceE
Q 017726 232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-G-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVT 309 (367)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-g-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~ 309 (367)
.++.|| ++-|...++|-.++++.+.+. + .+.+.+...++++-+.+.+++.|+++... +.+.++
T Consensus 295 --------vyqaGT---~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~----~~gsm~ 359 (432)
T COG0001 295 --------VYQAGT---LSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERHGIPLTVN----RVGSMF 359 (432)
T ss_pred --------ccccCC---CCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhCCCeEEe----eecceE
Confidence 123454 346666777778888887763 4 44444444444555555555557777665 333344
Q ss_pred EEEcCC--CC--------C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhh
Q 017726 310 AVIVPS--HI--------N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 310 ~~~~~~--~~--------~---~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
.+.+.+ .. + ...+...|.++ ||++.|+.. ...=+|.....++.|....++
T Consensus 360 ~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~-GV~l~ps~~----ea~flS~ahte~di~~~~~a~ 422 (432)
T COG0001 360 GIFFTEEGVRNYADAKRSDVERFAKFFHHLLNR-GVYLAPSQF----EAGFLSTAHTEEDIDRTLEAA 422 (432)
T ss_pred EEEecCCCCCCHHHHHhhchHHHHHHHHHHHhC-CcccCCccc----cceeeecccCHHHHHHHHHHH
Confidence 444422 11 1 12344566655 888876532 123344444445544444443
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-13 Score=127.56 Aligned_cols=307 Identities=13% Similarity=0.101 Sum_probs=178.3
Q ss_pred hHHHHHHHccCCCC--C--CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCc
Q 017726 21 PDQVIRAMNRNNED--Y--RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQ 94 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~--~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~ 94 (367)
.+++.+++.++... + ......+...++.+++.+.+.....+.+.|++||++|++.++... ....++|+....+|
T Consensus 74 ~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~y 153 (443)
T PRK06058 74 APRVVEAVREQVARFTHTCFMVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAY 153 (443)
T ss_pred CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCc
Confidence 44555555554321 1 111123455677777777765332236899999999999988731 23447888888888
Q ss_pred chHHHHHHHH-------HhCC-----ceEEEeCCCCCC------CC--------HHHHHHHHhccCCCCccEEEEEecCC
Q 017726 95 FSLLWIDQQQ-------RLNF-----NVDVVESDWGEG------AK--------LDVLASKLAADTAHTIKAICIVHNET 148 (367)
Q Consensus 95 ~~~~~~~~~~-------~~g~-----~~~~v~~~~~~~------~d--------~e~l~~~i~~~~~~~~~lv~~~~~~n 148 (367)
++........ ..+. .+..++.....+ .+ .+.+++.+. + +++.+|++...+.
T Consensus 154 HG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~-~~iAavi~EPi~g 230 (443)
T PRK06058 154 HGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVG--A-DNLAAVIIEPIQG 230 (443)
T ss_pred CcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhC--C-CceEEEEECCccC
Confidence 8864211110 0111 122233221111 00 122223222 1 4677888776665
Q ss_pred Ccccccc----HHHHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCCcceeeeeCHHHH
Q 017726 149 ATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKAL 219 (367)
Q Consensus 149 ~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~ 219 (367)
..|.+.| +++|+++|++ +|+++|.||++...... ........|+++. .|.+++...+|.+++++++.
T Consensus 231 ~gG~~~p~~~yl~~lr~lc~~--~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~--gK~l~~G~Pi~av~~~~~i~ 306 (443)
T PRK06058 231 EGGFIVPAEGFLPALLEWCRE--NGVVFIADEVQTGFARTGAWFACEHEGIVPDLITT--AKGIAGGLPLSAVTGRAEIM 306 (443)
T ss_pred CCCCcCCCHHHHHHHHHHHHH--cCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEE--cccccCCCccEEEEEcHHHH
Confidence 5666664 8899999999 99999999998643221 1222234688877 59987655579999999987
Q ss_pred HHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccc
Q 017726 220 EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNC 297 (367)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~ 297 (367)
+.+..... +. .+..+...+++..++++.+.+++ +.++..++.+++.+.|+++ ...++
T Consensus 307 ~~~~~~~~----------------~~--T~~gnpl~~aaa~a~L~~~~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~i 365 (443)
T PRK06058 307 DAPHPGGL----------------GG--TYGGNPVACAAALAAIETIEEDD---LVARARQIEALMTDRLRALAAEDDRI 365 (443)
T ss_pred hhccCCCC----------------CC--CCCCCHHHHHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHHHhhCCcE
Confidence 76653211 11 33466666777888888877764 4556777788888888875 23432
Q ss_pred cCCCccCCCceEEEEcCCC---C-C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 298 TQKEEWFSDTVTAVIVPSH---I-N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~---~-~---~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
..-. -.+.++.+.+.+. . + ...+.+.+.+ +||.+.++... ++.+|+.+....+++++.
T Consensus 366 ~~vr--g~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~-~Gv~~~~~~~~--~~~lr~~Ppl~~t~~~i~ 430 (443)
T PRK06058 366 GDVR--GRGAMIAIELVKPGTTEPDAELTKALAAAAHA-AGVIVLTCGTY--GNVIRLLPPLVIGDELLR 430 (443)
T ss_pred Eeee--ccceEEEEEEecCCCCCCcHHHHHHHHHHHHH-CCeEEeccCCC--CCEEEEECCCccCHHHHH
Confidence 2111 1233444444111 1 1 2346666655 59999764221 468999766555554433
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-13 Score=128.45 Aligned_cols=307 Identities=14% Similarity=0.100 Sum_probs=182.9
Q ss_pred hHHHHHHHccCCCC--C--CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCc
Q 017726 21 PDQVIRAMNRNNED--Y--RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQ 94 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~--~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~ 94 (367)
++++.+++.++... + ......+...++.++|++.+.....+.+.|++||++|++.++... .....+|+....+|
T Consensus 60 ~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~Y 139 (445)
T PRK08593 60 PPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAY 139 (445)
T ss_pred CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCc
Confidence 45566666554322 1 111223556678888888774332246999999999999988742 22345688888888
Q ss_pred chHHHHHHHHHhC-------------CceEEEeCCCCCC-----CC-------HHHHHHHHhcc-CCCCccEEEEEecCC
Q 017726 95 FSLLWIDQQQRLN-------------FNVDVVESDWGEG-----AK-------LDVLASKLAAD-TAHTIKAICIVHNET 148 (367)
Q Consensus 95 ~~~~~~~~~~~~g-------------~~~~~v~~~~~~~-----~d-------~e~l~~~i~~~-~~~~~~lv~~~~~~n 148 (367)
++....... ..+ ..+..+|.+.... .+ ++++++.+.+. ..+++.+|++.....
T Consensus 140 HG~t~~als-~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g 218 (445)
T PRK08593 140 HGSTYGSLS-MSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQG 218 (445)
T ss_pred CCCcHHHHh-hcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccC
Confidence 885421111 111 1133344332111 11 13455444321 114678999999888
Q ss_pred Ccccccc----HHHHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCCcceeeeeCHHHH
Q 017726 149 ATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKAL 219 (367)
Q Consensus 149 ~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~ 219 (367)
..|.+.| +++++++|++ +|+++|+||++...... ........|+++ .+|.+++...+|++++++++.
T Consensus 219 ~gG~~~~~~~yl~~l~~lc~~--~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t--~gK~l~~G~p~gav~~~~~i~ 294 (445)
T PRK08593 219 DGGLLEPVPGYFEALYKFCRE--HGILFAVDDIQQGLGRTGKWSSISHFNITPDLMS--FGKSLAGGMPMSAIVGRKEIM 294 (445)
T ss_pred CCCCcCCCHHHHHHHHHHHHH--cCCEEEEechhhCCCcCchHHHHHhcCCCCCEee--ecccccCCcccEEEEEcHHHH
Confidence 8898876 8899999999 99999999998532111 111122467665 578886544479999999988
Q ss_pred HHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccc
Q 017726 220 EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNC 297 (367)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~ 297 (367)
+.+..... . +.+..+...+++..++++.+++++ +.++..++.++|++.|+++ ..+++
T Consensus 295 ~~~~~~~~----------------~--~T~~~~pl~~aaa~a~l~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~v 353 (445)
T PRK08593 295 ESLEAPAH----------------L--FTTGANPVSCAAALATIDMIEDES---LLQRSAEKGEYARKRFDQWVSKYNFV 353 (445)
T ss_pred hhhccCCC----------------C--CCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence 77642110 0 123355666777778888887753 4567777888888888774 23333
Q ss_pred cCCCccCCCceEEEEcCCC----C----CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 298 TQKEEWFSDTVTAVIVPSH----I----NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~----~----~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
..-. -.+.++.+.+... . ....+++.+.+ +||.+.+. .++.+|+.+....+++|+.
T Consensus 354 ~~vr--G~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~~----~~~~lr~~p~l~~t~~~id 417 (445)
T PRK08593 354 GDVR--GYGLSIGIDIVSDKKLKTRDNEAALKICNYCFE-HGVVIIAV----AGNVLRFQPPLVITYEQLD 417 (445)
T ss_pred EEEe--ccceEEEEEEecCCCcCCCcHHHHHHHHHHHHH-CCeEEecc----CCCEEEEECCCccCHHHHH
Confidence 2111 1222333333111 1 13457777765 49988642 2467999887777766554
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-14 Score=133.61 Aligned_cols=308 Identities=15% Similarity=0.084 Sum_probs=181.2
Q ss_pred hHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC--CCCCeEEEEeCCcchH
Q 017726 21 PDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--SPGDRIISFLIGQFSL 97 (367)
Q Consensus 21 ~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~--~~gd~vl~~~~~~~~~ 97 (367)
++++.+++.+.... ...+.......++.+++.+++.- .+.+.+++||++|+..++.... ..+++|+..++.|++.
T Consensus 68 ~p~i~~a~~~~~~~~~~~~~~~~~~~~la~~L~~~~~~--~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~ 145 (426)
T PRK00062 68 HPEVVEAVIEAAEKGLSFGAPTELEVELAELVIELVPS--IEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGH 145 (426)
T ss_pred CHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHHHhCCC--CCEEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCc
Confidence 44555555554332 11122335556888888877631 2358999999999999887632 3467899999988886
Q ss_pred HHHHHHH-H-----hCCc-----eE-----EEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----HH
Q 017726 98 LWIDQQQ-R-----LNFN-----VD-----VVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LS 157 (367)
Q Consensus 98 ~~~~~~~-~-----~g~~-----~~-----~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~ 157 (367)
....... . .+.. .. .+..+ ..|++++++.+.+.. +++++|++......+|.+.+ ++
T Consensus 146 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~l~~~i~~~~-~~~aaiivEpv~~~~G~~~~~~~~l~ 221 (426)
T PRK00062 146 ADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAP---YNDLEAVEELFEEYG-DEIAAVIVEPVAGNMGVVPPKPGFLE 221 (426)
T ss_pred hhhhhhccCccccccCCCCCCCCCcccccceEEcC---CCCHHHHHHHHHhCC-CcEEEEEEeCCcCCCCCcCCCHHHHH
Confidence 4111111 0 0100 00 01111 127899999887543 46788899888888999987 89
Q ss_pred HHHHHHHhcCCCcEEEEeeeeccCcee----eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeec
Q 017726 158 KVRKLLDEYRHPALFLVDGVSSICAID----FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFD 233 (367)
Q Consensus 158 ~i~~~~~~~~~~~~vi~D~~~~~~~~~----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 233 (367)
+|+++|++ ||+++|+|++|...... ........|+ .+.+|.+++...+|++++++++++.+.... ..+.
T Consensus 222 ~l~~l~~~--~~~llI~DEv~~G~r~g~~~~~~~~~~~pDi--~~~gK~l~~G~p~ga~~~~~~i~~~~~~~~--~~~~- 294 (426)
T PRK00062 222 GLRELCDE--HGALLIFDEVMTGFRVALGGAQGYYGVTPDL--TTLGKIIGGGLPVGAFGGRREIMEQLAPLG--PVYQ- 294 (426)
T ss_pred HHHHHHHH--cCCEEEEeechhccccCCccHHHHhCCCcch--HhhhhHhhCCCcceeeeEHHHHHHhhccCC--Ccee-
Confidence 99999999 99999999998733110 1111123465 456799975434688899999888775211 0000
Q ss_pred hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH----cCCccccCCCccCCCceE
Q 017726 234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA----WGLKNCTQKEEWFSDTVT 309 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~~~ 309 (367)
+ ..+..+...+++..++++.+.+. +..++.+++.+++++.|++ .++..... ..+.++
T Consensus 295 ----------~--~T~~~~p~~~aaa~a~L~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vr----g~G~~~ 355 (426)
T PRK00062 295 ----------A--GTLSGNPLAMAAGLATLKLLKEP---GFYEELEALTKRLAEGLKEAAKKAGIPLTVN----RVGSMF 355 (426)
T ss_pred ----------c--ccCcCCHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHcCCceEEE----EecceE
Confidence 1 12345666667777788877664 3455666666666666654 34332111 123344
Q ss_pred EEEcCC-CC---------C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 310 AVIVPS-HI---------N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 310 ~~~~~~-~~---------~---~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
.+.+.+ .. + ...+.+.|.++ ||.+.+.. .+.+|+......++.|....+|.
T Consensus 356 ~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~-Gv~v~~~~----~~~~~~~~~~t~~ei~~~~~~l~ 419 (426)
T PRK00062 356 GLFFTDEPVTNYADAKKSDTERFARFFHAMLDE-GVYLAPSQ----FEAGFVSAAHTDEDIEKTLEAAR 419 (426)
T ss_pred EEEEecCCCcchhhhccccHHHHHHHHHHHHHC-CeEeecCC----cCceeeeccCCHHHHHHHHHHHH
Confidence 444421 11 1 24677788654 99987632 13466654334444455555544
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.6e-14 Score=130.69 Aligned_cols=310 Identities=15% Similarity=0.070 Sum_probs=189.5
Q ss_pred hHHHHHHHccCCCC---CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc---CC-C-CCeEEEEeC
Q 017726 21 PDQVIRAMNRNNED---YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT---LS-P-GDRIISFLI 92 (367)
Q Consensus 21 ~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~---~~-~-gd~vl~~~~ 92 (367)
++++.+++.++... ...+...+...++.++|.++..... +.+.|++||++|+..++... .. + ..+|+....
T Consensus 100 ~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~lae~L~~~~p~~~-~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~ 178 (459)
T PRK11522 100 NPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKL-KYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSG 178 (459)
T ss_pred CHHHHHHHHHHHhhCcccccccCCHHHHHHHHHHHHhCCCCC-CEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecC
Confidence 45666666664332 1112224556677777777764322 35899999999999988642 11 2 346888888
Q ss_pred CcchHHHHHHHHHhCCceEE---EeCCCCC----CCCHHHHHHHHhcc--CCCCccEEEEEecCCCcccccc----HHHH
Q 017726 93 GQFSLLWIDQQQRLNFNVDV---VESDWGE----GAKLDVLASKLAAD--TAHTIKAICIVHNETATGVTNN----LSKV 159 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~---v~~~~~~----~~d~e~l~~~i~~~--~~~~~~lv~~~~~~n~tG~~~~----~~~i 159 (367)
+|++........ .+-.... .+..++. ..|.+++++++++. ..+++.+|++.......|.+.| ++++
T Consensus 179 ~yHG~t~~~ls~-~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~l 257 (459)
T PRK11522 179 AFHGKSLGALSA-TAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAV 257 (459)
T ss_pred CCCCCcHHHhhh-cCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHH
Confidence 888853211111 1111000 1111110 12678888887631 1135678899988888898887 8999
Q ss_pred HHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCC-CcceeeeeCHHHHHHhccCCCCceeec
Q 017726 160 RKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVFFD 233 (367)
Q Consensus 160 ~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~~~~~~~~~~~ 233 (367)
+++|++ +|+++|+||++..... .+.......|+++. +|.+++. ..+|.+++++++.+.+... .+..
T Consensus 258 r~lc~~--~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~--gK~lggG~~Pigav~~~~~i~~~~~~~---~~~~- 329 (459)
T PRK11522 258 RKLCDE--FGALLILDEVQTGMGRTGKMFACEHENVQPDILCL--AKALGGGVMPIGATIATEEVFSVLFDN---PFLH- 329 (459)
T ss_pred HHHHHH--cCCEEEeccceecCCccchhhhhhccCCCCCEEEe--chhhhCCCccceeEEEcHHHHHHhccC---Cccc-
Confidence 999999 9999999999853211 11222234687744 7998764 2478888998887655321 0000
Q ss_pred hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCc-cccCCCccCCCceEE
Q 017726 234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLK-NCTQKEEWFSDTVTA 310 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~-~~~~~~~~~~~~~~~ 310 (367)
++ .+..+...+++..++++.+.+++ ..++..++.++|++.|+++ .++ ++..-. -.+.++.
T Consensus 330 ----------~~--T~~gnp~~~Aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~i~~Vr--G~Gl~~g 392 (459)
T PRK11522 330 ----------TT--TFGGNPLACAAALATINVLLEQN---LPAQAEQKGDYLLDGFRQLAREYPDLVQEAR--GKGMLMA 392 (459)
T ss_pred ----------CC--CCCCCHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHhCCCceeeEE--eceeEEE
Confidence 11 23346666677777888887753 5668888899999999886 343 222111 1234566
Q ss_pred EEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 311 VIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 311 ~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
+.+.+......+.+.|.+ +||.+.+... .+..+|+.+....+++|+.
T Consensus 393 iel~~~~~~~~i~~~l~~-~Gvl~~~~~~--~~~~lr~~Ppl~~t~~~id 439 (459)
T PRK11522 393 IEFVDNEIGYNFASEMFR-QRVLVAGTLN--NAKTIRIEPPLTLTIEQCE 439 (459)
T ss_pred EEecCchHHHHHHHHHHH-CCeEEEecCC--CCCEEEEECCccCCHHHHH
Confidence 666332234578888876 4999875321 2467999887777665444
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-13 Score=127.71 Aligned_cols=308 Identities=16% Similarity=0.147 Sum_probs=180.0
Q ss_pred hHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHhcCCC--CceEEe-cCChhHHHHHHHHcc--CCCCCeEEEEe
Q 017726 21 PDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTTS--GTPFLI-PTTGTGAWESALTNT--LSPGDRIISFL 91 (367)
Q Consensus 21 ~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~~~~~--~~~v~~-~~ggt~al~~~~~~~--~~~gd~vl~~~ 91 (367)
++.+.+++.++... +..........++.+++.+.+..+. .+.+.| ++||++|++.++... .....+|+...
T Consensus 57 ~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~ 136 (425)
T PRK09264 57 NPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFT 136 (425)
T ss_pred CHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEC
Confidence 45566666553321 1111123445667777777653321 224656 589999999988642 23345788888
Q ss_pred CCcchHHHHHHHH------H--hC---CceEEEeCCCCC---CCCHHHHHHHHhccC--CCCccEEEEEecCCCccccc-
Q 017726 92 IGQFSLLWIDQQQ------R--LN---FNVDVVESDWGE---GAKLDVLASKLAADT--AHTIKAICIVHNETATGVTN- 154 (367)
Q Consensus 92 ~~~~~~~~~~~~~------~--~g---~~~~~v~~~~~~---~~d~e~l~~~i~~~~--~~~~~lv~~~~~~n~tG~~~- 154 (367)
.+|++........ . .+ ..+..+|.+... .-|++++++.+.+.. .+++.+|++.......|.+.
T Consensus 137 ~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~ 216 (425)
T PRK09264 137 NGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVA 216 (425)
T ss_pred CccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCC
Confidence 8888854211111 0 11 123445543211 126778888886531 13567888888888788765
Q ss_pred ---cHHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccC-CCcceeeeeCHHHHHHhccC
Q 017726 155 ---NLSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSL-PTGMGIVCASPKALEASKTA 225 (367)
Q Consensus 155 ---~~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g-~~g~g~~~~~~~~~~~~~~~ 225 (367)
.+++|+++|++ ||+++|+|++++.... .........|++++ +|.+++ ...+|++++++++ ..+...
T Consensus 217 ~~~~l~~l~~lc~~--~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~t~--~K~l~~~G~pigav~~~~~i-~~~~~~ 291 (425)
T PRK09264 217 SAEWLQRLAKLCRK--HDILLIVDDIQAGCGRTGTFFSFERAGITPDIVTL--SKSISGYGLPMALVLIKPEL-DVWKPG 291 (425)
T ss_pred CHHHHHHHHHHHHH--cCcEEEEechhhCCccccHHHHHhhcCCCCCEEEe--ccccCCCccceEEEEEchhh-hccCCC
Confidence 38899999999 9999999999863221 12222345687766 698864 3336999998875 333211
Q ss_pred CCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHH-HHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccc-cCCC
Q 017726 226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAAL-DLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNC-TQKE 301 (367)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al-~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~-~~~~ 301 (367)
. ..+ .++.+...+++..+++ ..+.+. +..++..++.+++.+.|+++ .++.. ..-.
T Consensus 292 ~---------------~~~---T~~gnp~~~aaa~a~l~~~~~~~---~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vr 350 (425)
T PRK09264 292 E---------------HNG---TFRGNNLAFVTATAALEEYWSDD---AFEKEVKAKGELVRERLEEIAAKYPGLGAEVR 350 (425)
T ss_pred c---------------cCC---CCCCCHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHhCCCceecce
Confidence 0 112 2334555556666677 343332 45667778888888888774 23321 1111
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 302 EWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
..+.++++.+++......+++.+.++ ||.+.+.-. .+..||+++....+++++
T Consensus 351 --g~Gl~~~i~l~~~~~~~~l~~~~~~~-Gv~~~~~~~--~~~~lr~~p~l~~t~~ei 403 (425)
T PRK09264 351 --GRGMMQGIDFGDGELAGKIAAEAFEN-GLIIETSGP--EDEVVKLLPPLTIDEEEL 403 (425)
T ss_pred --ecccEEEEEecChHHHHHHHHHHHHC-CCEEeccCC--CCCEEEEeCCCCCCHHHH
Confidence 23456677774333355788888655 999875321 236799987655555443
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-13 Score=127.65 Aligned_cols=293 Identities=12% Similarity=0.075 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC-------CC-CCeEEEEeCCcchHHHHHHHHHhCC-----
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-------SP-GDRIISFLIGQFSLLWIDQQQRLNF----- 108 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~-------~~-gd~vl~~~~~~~~~~~~~~~~~~g~----- 108 (367)
....++.+.+++++... -+.+.++++|++|+..++.... .+ ..+|+....+|++......+ ..+.
T Consensus 88 ~~~~~la~~l~~~~~~~-~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s-~~~~~~~~~ 165 (427)
T TIGR00508 88 KPAIELCQKLVKMTPNA-LDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMS-VCDPENSMH 165 (427)
T ss_pred HHHHHHHHHHHhhCCCC-CCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhc-ccCCccccc
Confidence 44567777777776432 2469999999999998886422 12 35788888888886421111 1111
Q ss_pred --------ceEEEeCCCC-C-----CCCHHHHHHHHhccCCCCccEEEEEec-CCCccccc----cHHHHHHHHHhcCCC
Q 017726 109 --------NVDVVESDWG-E-----GAKLDVLASKLAADTAHTIKAICIVHN-ETATGVTN----NLSKVRKLLDEYRHP 169 (367)
Q Consensus 109 --------~~~~v~~~~~-~-----~~d~e~l~~~i~~~~~~~~~lv~~~~~-~n~tG~~~----~~~~i~~~~~~~~~~ 169 (367)
....++.+.. . .-|++++++++.+.. +++.+|++... ....|... .+++++++|++ +|
T Consensus 166 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~-~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~--~~ 242 (427)
T TIGR00508 166 SLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHS-DEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQ--YD 242 (427)
T ss_pred ccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcC-CcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHH--cC
Confidence 1112222111 0 114677788886543 45677777765 55556544 48889999999 99
Q ss_pred cEEEEeeeeccCce-----eeccccccceEEEecCCCcccCC-CcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhc
Q 017726 170 ALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL 243 (367)
Q Consensus 170 ~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (367)
+++|+|+++..... .........|+++ .+|.++|. ..++.++.++++.+.+.......+..
T Consensus 243 ~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi~~--~gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~~~~~----------- 309 (427)
T TIGR00508 243 ILLIADEIATGFGRTGKLFACEHAGVVPDILC--VGKALTGGYMTLSATVTTDKVAQTISSGEAGCFMH----------- 309 (427)
T ss_pred CEEEEeccccCCCcCCccchhhhcCCCCCEEE--echhhhcCcccceEEEEcHHHHHHHhcCCCCcccc-----------
Confidence 99999999843211 1112223578776 48988654 23688889999887775321111000
Q ss_pred CCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcC-CccccCCCccCCCceEEEEcCCCCCHHHH
Q 017726 244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG-LKNCTQKEEWFSDTVTAVIVPSHINSSEI 322 (367)
Q Consensus 244 ~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (367)
+. .+..+...+++..++++.+.+.. ..++.+++.++|++.|++++ ...... ..-.+.++.+.+.+..+...+
T Consensus 310 ~~--T~~g~p~~~aaa~a~l~~l~~~~---~~~~~~~~~~~l~~~L~~l~~~~~i~~--vrg~G~~~~i~~~~~~~~~~~ 382 (427)
T TIGR00508 310 GP--TFMGNPLACAVAEASLAILLEGE---WQKQVSAIENQLKRELSPLRKNPVVKD--VRVLGAIGVVEMYKPVNVEEL 382 (427)
T ss_pred CC--CCCcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHhhcCCCEEe--EeccccEEEEEECCccCHHHH
Confidence 11 22356667777888888887654 35688889999999998874 222221 001234566666433456788
Q ss_pred HHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH--HHhhhh
Q 017726 323 VRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF--NFQLLF 365 (367)
Q Consensus 323 ~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~--~~~~l~ 365 (367)
.+.|.++ ||.+.+. +..+|+++....+++|+ ...+|+
T Consensus 383 ~~~l~~~-Gv~~~~~-----~~~l~~~ppl~~t~~~id~~~~~l~ 421 (427)
T TIGR00508 383 QKKFVEQ-GVWIRPF-----GKLIYVMPPYIITTEQLQKLTAALI 421 (427)
T ss_pred HHHHHHC-CeEEEec-----CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 8888765 9998642 24699987755555444 344443
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-13 Score=128.06 Aligned_cols=307 Identities=18% Similarity=0.178 Sum_probs=173.2
Q ss_pred hHHHHHHHccCCCC--CCC--CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCc
Q 017726 21 PDQVIRAMNRNNED--YRS--PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQ 94 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~ 94 (367)
.+.+.+++.++... +.. ....+...++.+.|.+++.....+.+.|++||++|++.++... .....+|+....+|
T Consensus 72 ~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~y 151 (451)
T PRK06918 72 HPKVKEALHKQVDQYIHTGFNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGF 151 (451)
T ss_pred CHHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCc
Confidence 44555555554322 111 1123556678788887775332246999999999999988642 23345788888888
Q ss_pred chHHHHHHHHHhC-------------CceEEEeCCCCC----CCC--------HHHHHHHHhc--cCCCCccEEEEEecC
Q 017726 95 FSLLWIDQQQRLN-------------FNVDVVESDWGE----GAK--------LDVLASKLAA--DTAHTIKAICIVHNE 147 (367)
Q Consensus 95 ~~~~~~~~~~~~g-------------~~~~~v~~~~~~----~~d--------~e~l~~~i~~--~~~~~~~lv~~~~~~ 147 (367)
++....... ..+ ..+..+|.+... ... .+.+++.+.. .. +++.+|++...+
T Consensus 152 HG~t~~~ls-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iAavi~EPi~ 229 (451)
T PRK06918 152 HGRTLMTMT-MTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAP-ETIAAVVMEPVQ 229 (451)
T ss_pred Cccchhhhh-hcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCC-CceEEEEECccc
Confidence 886421111 111 112333332110 110 1234443321 11 356777777666
Q ss_pred CCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce---eecccccc--ceEEEecCCCcccCCCcceeeeeCHHH
Q 017726 148 TATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI---DFRMDEWG--IDVALTGSQKALSLPTGMGIVCASPKA 218 (367)
Q Consensus 148 n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~---~~~~~~~~--~d~~~~s~~K~~~g~~g~g~~~~~~~~ 218 (367)
...|.++| +++|.++|++ +|+++|+|+.+..... .+.....+ .|++ +.+|.+++...+|++++++++
T Consensus 230 g~gG~~~~~~~~l~~l~~l~~~--~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~--t~sK~l~~G~pig~v~~~~~i 305 (451)
T PRK06918 230 GEGGFIVPSKKFVQEVRNICSE--HGILFVADEIQTGFARTGKYFAIEHFDVVPDLI--TVSKSLGAGVPISGVIGRKEI 305 (451)
T ss_pred CCCCCccCCHHHHHHHHHHHHH--cCCEEEEeccccCcCccCceehhHhcCCCCCEE--eeehhhcCCCccEEEEEcHHH
Confidence 55676664 7789999999 9999999999864322 12222222 6755 678999765557999999998
Q ss_pred HHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCcc
Q 017726 219 LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKN 296 (367)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~ 296 (367)
.+.+..... +. .+..+...+++..++++.+.+.++. ++.++..+++.+.|+++ ....
T Consensus 306 ~~~~~~~~~----------------~~--T~~g~~l~~aaa~a~l~~i~~~~~~---~~~~~~g~~l~~~l~~l~~~~~~ 364 (451)
T PRK06918 306 MDESAPGEL----------------GG--TYAGSPLGCAAALAVLDIIEKENLN---DRAIELGKVVMNRFEEMKNKYNC 364 (451)
T ss_pred HhccCCCCc----------------Cc--CCCcCHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHHHhhCCC
Confidence 877653211 11 2345666667777788877665443 34555667777777664 3332
Q ss_pred ccCCCccCCCceEEEEcC-CC---CC----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 297 CTQKEEWFSDTVTAVIVP-SH---IN----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~-~~---~~----~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
...-.. .+. ++.+.+. +. .+ ...+.+.+.+ +||.+.++... ++++|+++....+++++
T Consensus 365 ~~~vrg-~G~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~Gvlv~~~~~~--~~~lrl~p~l~~t~~~i 430 (451)
T PRK06918 365 IGDVRG-LGA-MCAFELVQDRKTKEPDKTLTANICKEANK-RGLLLLSAGTY--GNVIRVLMPLVITDEQL 430 (451)
T ss_pred ceeecc-cee-EEEEEEccCCCcCCCcHHHHHHHHHHHHH-CCeEEeecCCC--CCEEEEECCCccCHHHH
Confidence 211111 232 3333321 11 11 3345566654 59999875321 46899987554555443
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-13 Score=126.95 Aligned_cols=314 Identities=18% Similarity=0.177 Sum_probs=185.5
Q ss_pred ChHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC------C-C-CCeE
Q 017726 20 IPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL------S-P-GDRI 87 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~------~-~-gd~v 87 (367)
-.+.+.+++.++... .......+...++.+++.+++... -+.+.|++||++|++.++.... . + ..+|
T Consensus 63 ~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~i 141 (442)
T PRK13360 63 GRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIAEIAPGG-LNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRL 141 (442)
T ss_pred CCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 345566666554321 111112344557777788776322 2358999999999999886421 1 2 3578
Q ss_pred EEEeCCcchHHHHHHH------HHh--C---CceEEEeCCCC---CCC----------CHHHHHHHHhccCCCCccEEEE
Q 017726 88 ISFLIGQFSLLWIDQQ------QRL--N---FNVDVVESDWG---EGA----------KLDVLASKLAADTAHTIKAICI 143 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~------~~~--g---~~~~~v~~~~~---~~~----------d~e~l~~~i~~~~~~~~~lv~~ 143 (367)
+....+|++....... ... + ..+..+|.... ..+ .++++++++.....+++.+|++
T Consensus 142 i~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aaviv 221 (442)
T PRK13360 142 IGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIV 221 (442)
T ss_pred EEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 8888888885321110 000 1 12333443311 001 1457788876432246788899
Q ss_pred EecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeec-cCce----eeccccccceEEEecCCCcccCC-Ccceeee
Q 017726 144 VHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSS-ICAI----DFRMDEWGIDVALTGSQKALSLP-TGMGIVC 213 (367)
Q Consensus 144 ~~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~-~~~~----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~ 213 (367)
.......|.+.| +++|+++|++ +|+++|+||++. +|.. .........|++++ +|.+++. ..+|.++
T Consensus 222 Epi~g~~G~~~~~~~fl~~lr~lc~~--~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDivt~--gK~l~gG~~P~gav~ 297 (442)
T PRK13360 222 EPVAGSTGVLIPPKGYLQRLREICDK--HGILLIFDEVITGFGRLGAPFAAQYFGVTPDLLTC--AKGLTNGAIPMGAVF 297 (442)
T ss_pred ccccCCCCCccCCHHHHHHHHHHHHH--cCCEEEEechhhCCCCCccchhhhhcCCCCceeee--eeccccCccceEEEE
Confidence 988888899888 9999999999 999999999984 4321 11222234677754 7988653 2368888
Q ss_pred eCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-
Q 017726 214 ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW- 292 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~- 292 (367)
+++++.+.+......... .+... .++.+...+++..++++.+.+++ ..++.+++.+++.+.|+++
T Consensus 298 ~~~~i~~~~~~~~~~~~~--------~~~~~---T~~g~pl~~aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~l~~l~ 363 (442)
T PRK13360 298 VSSEIHDAFMQGPEAGIE--------FFHGY---TYSGHPLACAAALATLDLYEREG---LLTRAARLAPYWEDALHSLR 363 (442)
T ss_pred EcHHHHHHhhcCCccccc--------cccCC---CCCCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHhh
Confidence 999987766431100000 00112 33467777788888999888765 4557778888899888876
Q ss_pred CCccccCCCccCCCceEEEEc-CC-C---CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 293 GLKNCTQKEEWFSDTVTAVIV-PS-H---INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 293 g~~~~~~~~~~~~~~~~~~~~-~~-~---~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
.+..+.+-. -.+.+..+.+ +. . ....++.+.|.++ ||.+... +..+|+++....++++++
T Consensus 364 ~~~~v~~vr--G~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~~-Gvl~~~~-----~~~lr~~Ppl~~t~~eid 428 (442)
T PRK13360 364 DAPHVIDIR--NLGLVGAVELAPRDGKPGKRAYEVFLKCFEK-GLMIRYT-----GDILALSPPLIIEEAQID 428 (442)
T ss_pred cCCCeeeee--ccceEEEEEEecCCCCcchhHHHHHHHHHHC-CcEEEec-----CCEEEEeCCCccCHHHHH
Confidence 333322110 0121222232 11 1 1234677777654 9988642 357999977666655443
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-14 Score=129.55 Aligned_cols=269 Identities=17% Similarity=0.163 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC---
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--- 118 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--- 118 (367)
....++++..|+.+|++.. ..++||+|.|+..++++.+.+||.||+..+.|=|.. ......|+..+++....+
T Consensus 70 G~i~eAqe~aA~~fgAd~t--yFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~--~glilaGa~Pvyl~p~~np~~ 145 (557)
T COG1982 70 GPIKEAQELAARVFGADHT--YFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIH--HGLILAGATPVYLEPSRNPLY 145 (557)
T ss_pred ccHHHHHHHHHHHhCCCce--EEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHH--HHHHHcCCceEEecCCCCccc
Confidence 4467899999999999873 578899999999999999999999999999877754 225567888887765432
Q ss_pred ---CCCCHHHHHHHHhccCCCCc-cEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCc-----eeecccc
Q 017726 119 ---EGAKLDVLASKLAADTAHTI-KAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICA-----IDFRMDE 189 (367)
Q Consensus 119 ---~~~d~e~l~~~i~~~~~~~~-~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~-----~~~~~~~ 189 (367)
+.++.+.+++.+.++. .. |++++++| +..|+.++.++|.+.++. .++|+.+|++|.+-. ++-...+
T Consensus 146 gi~ggI~~~~~~~~l~~~~--~~~k~~vitnp-TYdGv~~n~~~i~~~~~~--~~a~v~~deah~~~~~~~~~l~~~~~~ 220 (557)
T COG1982 146 GIIGGIPLETFKEALLAHP--DAEKLAVITNP-TYDGVCYNLRKIVELLHH--YGAWVLYDEAHPAHFDFSPMLPESALN 220 (557)
T ss_pred cccCCCCHHHHHHHHHhCh--hhheeEEEecC-ccceEeecHHHHHHHHhh--cCceEEhhhcCcccccccccCcchhhh
Confidence 4679999999988764 33 67777765 789999999999999999 999999999986521 1112223
Q ss_pred ccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh
Q 017726 190 WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE 269 (367)
Q Consensus 190 ~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~ 269 (367)
.++|+++-|.||.+++....+++..+.. + ..+...+.+.+..- +..+|+...++++..|-......
T Consensus 221 ~~~~~~tqS~HK~l~alSQaS~iHv~~~--~----------~~~~~r~nea~~~h--~STSPsY~l~ASlD~Ar~~~~~~ 286 (557)
T COG1982 221 GGADFVTQSTHKLLAALSQASMIHVKDG--R----------AVNHERFNEALMMH--QSTSPSYPLMASLDVARMQEGNA 286 (557)
T ss_pred cCceEEEechhhhhhhhhhhHHHhhCCC--c----------cCCHHHHHHHHHHH--ccCCchHHHHHHHHHHHHhhhhh
Confidence 5789999999999987665566666542 0 11111111222211 13367777777777755555555
Q ss_pred C---hHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc-----------------cCCCceEEEEcC-CCCCHHHHHHHHH
Q 017726 270 G---LENVIERHRRLGKATRLAVEAW-GLKNCTQKEE-----------------WFSDTVTAVIVP-SHINSSEIVRRAW 327 (367)
Q Consensus 270 g---~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-----------------~~~~~~~~~~~~-~~~~~~~l~~~L~ 327 (367)
| .++........++.+++...+. ++++..+..- ...+.-+.+..| .|+++..+.++|.
T Consensus 287 G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~~Gipg~~v~~~L~ 366 (557)
T COG1982 287 GRELWQEVIDEAIDFRKALRRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPEFGIPGAIVAKYLR 366 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccccCCcccccccccccccceeccccEEEEecCCCCCcHHHHHHHHH
Confidence 5 2333566677777777777776 5666665320 012222334443 4788999999997
Q ss_pred hhCCeEE
Q 017726 328 QRYNLSL 334 (367)
Q Consensus 328 ~~~gv~v 334 (367)
++ |+..
T Consensus 367 e~-gii~ 372 (557)
T COG1982 367 EH-GIIP 372 (557)
T ss_pred Hc-CCee
Confidence 66 6544
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.8e-13 Score=125.22 Aligned_cols=310 Identities=17% Similarity=0.117 Sum_probs=185.6
Q ss_pred hHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC--------CCCCeEE
Q 017726 21 PDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--------SPGDRII 88 (367)
Q Consensus 21 ~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~--------~~gd~vl 88 (367)
++++.+++.++... .......+...++.+++.+..+..- +.+.|++||++|+..++.... ....+|+
T Consensus 72 ~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~-~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii 150 (453)
T PRK06943 72 NPRINAALKDQLDTLEHAMLAGCTHEPAIELAERLAALTGGTL-GHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFV 150 (453)
T ss_pred CHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCC-CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence 45555555554321 1111123455677777877765332 369999999999999887531 1245788
Q ss_pred EEeCCcchHHHHHHHHHhC------------CceEEEeCCCCCC------------CCHHHHHHHHhccCCCCccEEEEE
Q 017726 89 SFLIGQFSLLWIDQQQRLN------------FNVDVVESDWGEG------------AKLDVLASKLAADTAHTIKAICIV 144 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~------------~d~e~l~~~i~~~~~~~~~lv~~~ 144 (367)
....+|++......+ ..| ..+..++.+.... -+++++++.++++. +++.+|++.
T Consensus 151 ~~~~~yHG~t~gals-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~iAAviiE 228 (453)
T PRK06943 151 CLANGYHGETIGALG-VTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAERA-GKIAALIVE 228 (453)
T ss_pred EECCCcCCCcHHhhc-ccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhCC-CceEEEEEe
Confidence 888888885321111 011 1123343322110 12467777776544 577888888
Q ss_pred e-cCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCC-Ccceeee
Q 017726 145 H-NETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLP-TGMGIVC 213 (367)
Q Consensus 145 ~-~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~ 213 (367)
. .....|.+.+ +++++++|++ ||+++|.||.++..... ........|+++. .|.++|. ..+|.++
T Consensus 229 Pvvqg~gG~~~~~~~yl~~lr~lc~~--~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt~--gKgl~gG~~Pi~av~ 304 (453)
T PRK06943 229 PLVQCAAGMAMHDPSYLRGLRALCDR--YGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLCL--SKGISGGYLPLSLVL 304 (453)
T ss_pred ccccccCCcccCCHHHHHHHHHHHHH--cCCEEEeechhhCCCCCcchhHHHhCCCCCCeEee--ehhhccCcccceEEE
Confidence 7 4777787764 7789999999 99999999997643221 1222335788888 6888765 3579999
Q ss_pred eCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-
Q 017726 214 ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW- 292 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~- 292 (367)
+++++.+.+........ +..+. .+..+...+++..++|+.+++++ ..++..+..++|.+.|+++
T Consensus 305 ~~~ei~~~~~~~~~~~~----------~~~~~--T~~gnpl~~aaa~a~L~~i~~~~---l~~~~~~~G~~l~~~L~~l~ 369 (453)
T PRK06943 305 SRDAIFAAFYDDDVTRG----------FLHSH--SYTGNPLACRAALATLDLFAEDD---VLARNARKSARLRAALAPLA 369 (453)
T ss_pred EcHHHHHhhcccCccCC----------ccCCC--CCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHh
Confidence 99998876653110000 00121 33467777788888888888775 3456667778888888775
Q ss_pred CCccccCCCccCCCceEEEEcCCCCC-----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 293 GLKNCTQKEEWFSDTVTAVIVPSHIN-----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 293 g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
....+..-. -.+.++.+.+..+.+ ...+.+.+.+ +||.+.+. +..+|+++....+++|+.
T Consensus 370 ~~~~v~~vr--G~Gl~~gvel~~~~~~~~~~~~~i~~~~~~-~Gll~~~~-----g~~l~~~Ppl~it~~eid 434 (453)
T PRK06943 370 AHPQVRHLR--QRGTIFAFDVALDGDAARTFSRRFFEAALE-RELLLRPI-----GTTVYLMPPYVLDDDEIA 434 (453)
T ss_pred cCCCEEeEe--ccccEEEEEEccCCCcchHHHHHHHHHHHH-CCcEEEec-----CCEEEEeCCCcCCHHHHH
Confidence 322222111 233455555521111 2356777765 49988642 246999866666555443
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-13 Score=125.40 Aligned_cols=283 Identities=16% Similarity=0.105 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCcchHHHHHHHHHhC------------
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQFSLLWIDQQQRLN------------ 107 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~g------------ 107 (367)
+...++.++|.+.......+.+.|++||++|++.++... ....++|+....+|++.....+.. .+
T Consensus 97 ~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~-t~~~~~~~~~~~~~ 175 (441)
T PRK05769 97 EPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSL-TASKPVQRKGFFPL 175 (441)
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHh-cCCCcccccCCCCC
Confidence 455678888887764322246999999999999988642 233467888888888864211111 11
Q ss_pred -CceEEEeCCCCCC-----CC--------HHHHHH-HHhc--cCCCCccEEEEEecCCCcccccc----HHHHHHHHHhc
Q 017726 108 -FNVDVVESDWGEG-----AK--------LDVLAS-KLAA--DTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEY 166 (367)
Q Consensus 108 -~~~~~v~~~~~~~-----~d--------~e~l~~-~i~~--~~~~~~~lv~~~~~~n~tG~~~~----~~~i~~~~~~~ 166 (367)
..+..++.+.... -+ ++.+++ .+++ .+ +++.+|++.......|.+.| ++++.++|++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~-~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~- 253 (441)
T PRK05769 176 MPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPP-EEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADK- 253 (441)
T ss_pred CCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCC-CceEEEEECcccCCCCCcCCCHHHHHHHHHHHHH-
Confidence 1133343321111 01 233555 3322 12 46788888888888899888 9999999999
Q ss_pred CCCcEEEEeeeeccCcee---eccc--cccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHh
Q 017726 167 RHPALFLVDGVSSICAID---FRMD--EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFY 241 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~~---~~~~--~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (367)
+|+++|+|++++..... +... ....|++++ +|.+++...+|.+++++++.......
T Consensus 254 -~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~--~K~l~~G~p~gav~~~~~i~~~~~~~---------------- 314 (441)
T PRK05769 254 -YGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITL--AKAIAGGLPLGAVIGRAELMFLPPGS---------------- 314 (441)
T ss_pred -cCCEEEEechhhCCCcccceehhhccCCCCCEEEE--cccccCCcccEEEEEehhhhhcCCCC----------------
Confidence 99999999998732111 1111 223588765 68887655578999998876422100
Q ss_pred hcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCCceEEEEcCCCC--
Q 017726 242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSHI-- 317 (367)
Q Consensus 242 ~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~~-- 317 (367)
..++ ++.+...+++..++++.+.+ ...++..++.++|++.|+++ .+.+...-. -.+.++.+.+.+..
T Consensus 315 ~~~T---~~g~p~~~aaa~a~L~~l~~----~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vr--g~G~~~~i~~~~~~~~ 385 (441)
T PRK05769 315 HANT---FGGNPVAAAAALATLEELEE----GLLENAQKLGEYLRKELKELKEKYEFIGDVR--GLGLMIGVELVKDRKE 385 (441)
T ss_pred CCCC---CCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCCCeeeee--cceEEEEEEeccCCcc
Confidence 0122 23455566777778888766 34567778888888888775 244333211 12335555542210
Q ss_pred ----CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 318 ----NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 318 ----~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
....+.+.+.+ .||.+.+. ....+|+++....+++|+.
T Consensus 386 ~~~~~~~~~~~~~~~-~Gil~~~~----~~~~lr~~p~l~~t~~~id 427 (441)
T PRK05769 386 PDPKLRDKVLYEAFK-RGLLLLGA----GKSAIRIIPPLIITEEEAD 427 (441)
T ss_pred ccHHHHHHHHHHHHh-CCcEEecC----CCCEEEEeCCCCCCHHHHH
Confidence 12356666765 49988642 2357999987766665554
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-13 Score=125.75 Aligned_cols=292 Identities=19% Similarity=0.179 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC------C--CCCeEEEEeCCcchHHHHHHHH------H--
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL------S--PGDRIISFLIGQFSLLWIDQQQ------R-- 105 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~------~--~gd~vl~~~~~~~~~~~~~~~~------~-- 105 (367)
+...++.++|.+++... .+.+.|++||++|++.++.... . ...+|+....+|++........ .
T Consensus 92 ~~~~~la~~L~~~~p~~-~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~ 170 (445)
T PRK09221 92 PLAFELAERLAELAPGG-LDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKM 170 (445)
T ss_pred HHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhc
Confidence 44557777777776422 2369999999999999886421 1 1347888888888753211110 0
Q ss_pred hC---CceEEEeCCC-C----CCC--------CHHHHHHHHhccCCCCccEEEEEecCCCcccccc----HHHHHHHHHh
Q 017726 106 LN---FNVDVVESDW-G----EGA--------KLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDE 165 (367)
Q Consensus 106 ~g---~~~~~v~~~~-~----~~~--------d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~~i~~~~~~ 165 (367)
.+ ..+..++.+. . +.. ..+++++.++....+++.+|++.......|.+.| +++++++|++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~ 250 (445)
T PRK09221 171 FGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDK 250 (445)
T ss_pred cCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHH
Confidence 00 1123333321 0 000 1357777776432246788999998888999888 9999999999
Q ss_pred cCCCcEEEEeeeec-cCce--e--eccccccceEEEecCCCcccCC-CcceeeeeCHHHHHHhccCCCCceeechHHHHH
Q 017726 166 YRHPALFLVDGVSS-ICAI--D--FRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVFFDWKDYIK 239 (367)
Q Consensus 166 ~~~~~~vi~D~~~~-~~~~--~--~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (367)
+|+++|+||+++ +|.. . ........|++++ +|.+++. ..+|.+++++++.+.+.... ....
T Consensus 251 --~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi~~~--gK~l~gG~~Pi~av~~~~~i~~~~~~~~--~~~~------- 317 (445)
T PRK09221 251 --HGILLIFDEVITGFGRLGAAFAAERFGVTPDIITF--AKGLTNGAIPMGAVIASDEIYDAFMQGP--EYAI------- 317 (445)
T ss_pred --cCCEEEEeehhhCCCcCchhhHHHhcCCCCCEEEe--ccccccCcccceeeEEcHHHHHhhccCc--cccc-------
Confidence 999999999985 3311 1 1222234587765 6777543 23688899999887664310 0000
Q ss_pred HhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCC--C
Q 017726 240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS--H 316 (367)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~--~ 316 (367)
.+..+. .++.+...+++..++++.+.+++ +.++..++.++|++.|+++ +...+.+-. -.+.+..+.+.+ .
T Consensus 318 ~~~~~~--T~~~~pl~~aaa~a~L~~i~~~~---l~~~~~~~g~~l~~~l~~l~~~~~v~~vr--g~Gl~~~v~~~~~~~ 390 (445)
T PRK09221 318 EFFHGY--TYSAHPVACAAGLATLDIYREED---LFERAAELAPYFEDAVHSLKGLPHVIDIR--NIGLVAGIELAPRPG 390 (445)
T ss_pred cccccc--CCCcCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhhccCCCEEEEe--cCceEEEEEEecccc
Confidence 000121 23456656677777888887764 4668888999999999886 443323211 122233333311 1
Q ss_pred ---CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 317 ---INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 317 ---~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
....++.+.+.++ ||.+..+ +..+|+++....+++++.
T Consensus 391 ~~~~~~~~~~~~~~~~-Gv~~~~~-----~~~lr~~Ppl~~t~~eid 431 (445)
T PRK09221 391 APGARGYEAFMKCFEK-GLLVRYT-----GDTIALSPPLIIEKAQID 431 (445)
T ss_pred cccchHHHHHHHHHHC-CeEEeec-----CCEEEEECCccCCHHHHH
Confidence 1234677888655 9998642 357999977666655443
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.7e-13 Score=124.18 Aligned_cols=315 Identities=13% Similarity=0.072 Sum_probs=184.9
Q ss_pred hHHHHHHHccCCCC--CCCC-cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC-------CCC-CeEEE
Q 017726 21 PDQVIRAMNRNNED--YRSP-AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-------SPG-DRIIS 89 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~-------~~g-d~vl~ 89 (367)
.+++.+++.++... +... ...+...++.+.|.++++.. +.+.|++||++|++.++.... .+| .+|+.
T Consensus 65 ~p~v~~ai~~q~~~~~~~~~~~~~~~~~~lae~l~~~~~~~--~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~ 142 (451)
T PRK07678 65 RKELAEAAYEQLKTLSYFPLTQSHEPAIKLAEKLNEWLGGE--YVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFIS 142 (451)
T ss_pred CHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHHhCCCC--CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 45556655554332 1111 12244567888888887543 369999999999999886421 123 57888
Q ss_pred EeCCcchHHHHHHHHHhC------------CceEEEeCCCCCCC---------C---HHHHHHHHhccCCCCccEEEEEe
Q 017726 90 FLIGQFSLLWIDQQQRLN------------FNVDVVESDWGEGA---------K---LDVLASKLAADTAHTIKAICIVH 145 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~---------d---~e~l~~~i~~~~~~~~~lv~~~~ 145 (367)
...+|++....... ..+ ..+..++.+..... + ++.++++++....+++.+|++..
T Consensus 143 ~~~~yHG~t~~als-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EP 221 (451)
T PRK07678 143 RYRAYHGNSMGALA-ATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEP 221 (451)
T ss_pred ECCCcCCccHHHhh-cCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEcc
Confidence 88888885421111 111 11233332211111 1 23356666522115688999998
Q ss_pred cCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCC-CcceeeeeC
Q 017726 146 NETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLP-TGMGIVCAS 215 (367)
Q Consensus 146 ~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~ 215 (367)
.....|.+.| +++++++|++ +|+++|.||++...... +.......|+++. .|.+++. ..+|.++++
T Consensus 222 iqg~gG~~~~~~~fl~~lr~lc~~--~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt~--gK~lggG~~Pi~av~~~ 297 (451)
T PRK07678 222 IITGGGVLMPPQDYMKAVKEICQK--HGALLISDEVICGFGRTGKAFGFMNYGVKPDIITM--AKGITSAYLPLSATAVK 297 (451)
T ss_pred ccCCCCcccCCHHHHHHHHHHHHH--cCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEEe--ecccccCCcceeEEEEc
Confidence 8877888876 7889999999 99999999998532211 1222334788876 7988765 347999999
Q ss_pred HHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--C
Q 017726 216 PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--G 293 (367)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g 293 (367)
+++.+.+....... .+..+. .++.+...+++..++++.+.+++ +.++..++.++|++.|++. .
T Consensus 298 ~~i~~~~~~~~~~~----------~~~h~~--T~~gnp~~~aaa~a~l~~l~~~~---~~~~~~~~g~~l~~~l~~~~~~ 362 (451)
T PRK07678 298 KEIYEAFKGKGEYE----------HFRHVN--TFGGNPAACALALKNLEIMENEN---LIERSAQLGELLLEQLKEELGE 362 (451)
T ss_pred HHHHHHHhccCccc----------ccccCC--CCCcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHhc
Confidence 99987775321000 001121 34567777788888898887765 3456677777777777553 3
Q ss_pred CccccCCCccCCCceEEEEcCCC------CC---HHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeecCCCCHHHHH
Q 017726 294 LKNCTQKEEWFSDTVTAVIVPSH------IN---SSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~l~~~L~~~~gv~v~~g~~--~~~~~~iRi~~~~~~~~~~~~ 360 (367)
...+..-. ..+.++.+.+.++ .+ ...+.+.+.++ ||.+.+... +..+..+|+++...++++|+.
T Consensus 363 ~~~v~~vr--g~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~-Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid 437 (451)
T PRK07678 363 HPLVGDIR--GKGLLVGIELVNDKETKEPADNDKVASVVAACKEK-GLIIGKNGDTVAGYNNVLTLSPPLVISSEEIA 437 (451)
T ss_pred CCCEEEEE--eeceEEEEEEecCCcccCcCchHHHHHHHHHHHHC-CcEEeecCccccCCCCEEEEECCCcCCHHHHH
Confidence 32222100 1233444544211 01 34577777655 999865321 122467999987766655443
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-13 Score=126.10 Aligned_cols=313 Identities=13% Similarity=0.064 Sum_probs=186.0
Q ss_pred hHHHHHHHccCCCC----CCC-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC------C-C-CCeE
Q 017726 21 PDQVIRAMNRNNED----YRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL------S-P-GDRI 87 (367)
Q Consensus 21 ~~~v~~a~~~~~~~----~~~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~------~-~-gd~v 87 (367)
++++.+++.++... +.. ....+...++.+.|.+++..+- +.+.|++||++|+..++.... . + ..+|
T Consensus 66 ~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~i 144 (460)
T PRK06105 66 EQRLVEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVAMAPVPM-SKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKI 144 (460)
T ss_pred CHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCC-CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 45566666654322 111 1123555678888888775322 368999999999999887521 1 2 3578
Q ss_pred EEEeCCcchHHHHHHH--H------HhC---CceEEEeCCCCCCC-------------CHHHHHHHHhccCCCCccEEEE
Q 017726 88 ISFLIGQFSLLWIDQQ--Q------RLN---FNVDVVESDWGEGA-------------KLDVLASKLAADTAHTIKAICI 143 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~--~------~~g---~~~~~v~~~~~~~~-------------d~e~l~~~i~~~~~~~~~lv~~ 143 (367)
+....+|++....... . ..+ ..+..++.+..... ..+++++++.+....++.+|++
T Consensus 145 l~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIv 224 (460)
T PRK06105 145 ISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIG 224 (460)
T ss_pred EEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEE
Confidence 8888878875321110 0 001 11223333211111 1356777775321146788899
Q ss_pred EecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeec-cCce----eeccccccceEEEecCCCcccCC-Ccceeee
Q 017726 144 VHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSS-ICAI----DFRMDEWGIDVALTGSQKALSLP-TGMGIVC 213 (367)
Q Consensus 144 ~~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~-~~~~----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~ 213 (367)
.......|.+.+ +++++++|++ +|+++|+||++. +|-. .+.......|+++. +|.++|. ..+|.++
T Consensus 225 EPiqg~gG~~~~~~~yl~~lr~lc~~--~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~~--gK~lggG~~P~~av~ 300 (460)
T PRK06105 225 EPVMGAGGVIVPPKTYWEKIQAVLRK--YDILLVADEVICGFGRTGNMFGCETFGIKPDILVM--SKQLSSSYQPLSAVL 300 (460)
T ss_pred ccccCCCCCccCCHHHHHHHHHHHHH--cCCeEEEeccccCCCcCchhhhHHhcCCCCCeeee--ecccccCcccceEEE
Confidence 888888888876 8899999999 999999999984 4321 12222335787765 7888764 2369999
Q ss_pred eCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-
Q 017726 214 ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW- 292 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~- 292 (367)
+++++.+.+......... +..+ ..+..+...+++..++++.+.+++ ..++.+++.++|++.|+++
T Consensus 301 ~~~~i~~~~~~~~~~~~~---------~~h~--~T~~gnpl~~aaa~a~L~~i~~~~---l~~~v~~~g~~l~~~L~~l~ 366 (460)
T PRK06105 301 MNEKVYDPIADESGKIGT---------FGHG--FTASGHPVAAAVALENLAIIEERD---LVGNAAERGARLQARLRALA 366 (460)
T ss_pred EcHHHHHHHhcccccCcc---------cccC--CCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHhh
Confidence 999987766532100000 0001 133466666777777888888764 4567888888888888876
Q ss_pred CCccccCCCccCCCceEEEEcCCC-C-----C-----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 293 GLKNCTQKEEWFSDTVTAVIVPSH-I-----N-----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 293 g~~~~~~~~~~~~~~~~~~~~~~~-~-----~-----~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
...++..-. -.+.+..+.+... . + ...+.+.+.+ +||.+.+. ++.+|+++....+++|+.
T Consensus 367 ~~~~v~~vr--G~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~-~Gvl~~~~-----g~~i~l~Ppl~it~~eid 437 (460)
T PRK06105 367 DHPLVGEVR--GVGLIAAVELVADKATKTPFEPPGKVGARANAAAHE-HGVISRAM-----GDTLAFCPPLIITAAQVD 437 (460)
T ss_pred cCCCeEEEE--ecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHH-CCeEEEec-----CCEEEEECCCccCHHHHH
Confidence 333322111 1233444544111 0 1 2356777764 59998752 357999987766655444
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-13 Score=125.96 Aligned_cols=241 Identities=16% Similarity=0.111 Sum_probs=155.2
Q ss_pred hHHHHHHHccCCCCCC-CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCcchH
Q 017726 21 PDQVIRAMNRNNEDYR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQFSL 97 (367)
Q Consensus 21 ~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~~~~ 97 (367)
.+.+.+++.++..... .....+...++.+++.+.+. ..+.+.|++||++|++.++... .....+|+....+|++.
T Consensus 71 ~p~v~~ai~~q~~~~~~~~~~~~~~~~la~~l~~~~p--~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~ 148 (428)
T PRK12389 71 HPHITKAITEAAENGVLYGTPTELEIEFAKMLKEAIP--SLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGH 148 (428)
T ss_pred CHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHHHhCC--CCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCC
Confidence 3556666665433211 11122445667777777654 2346999999999999988642 23346788888888885
Q ss_pred HHHHHHHHhCCc-------------------eEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---
Q 017726 98 LWIDQQQRLNFN-------------------VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN--- 155 (367)
Q Consensus 98 ~~~~~~~~~g~~-------------------~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~--- 155 (367)
....+.. .+.. +..++. .|++.+++.++++. +++.+|++.......|.+.|
T Consensus 149 t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~-~~vaavi~EPv~g~~G~~~p~~~ 221 (428)
T PRK12389 149 SDLVLVA-AGSGPSTLGTPDSAGVPKSIAQEVITVPF-----NDIEALKEALDKWG-DEVAAVLVEPIVGNFGIVEPKPG 221 (428)
T ss_pred hHHHHHh-cCCcccccCCCCCCCCCCcccCceEEcCC-----CCHHHHHHHHHhcC-CcEEEEEEeCCCCCCCCcCCCHH
Confidence 4211111 1111 111111 26889999887654 46788899988888898887
Q ss_pred -HHHHHHHHHhcCCCcEEEEeeeeccCcee----eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCce
Q 017726 156 -LSKVRKLLDEYRHPALFLVDGVSSICAID----FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV 230 (367)
Q Consensus 156 -~~~i~~~~~~~~~~~~vi~D~~~~~~~~~----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~ 230 (367)
+++++++|++ +|+++|+||+++.+-.. ........|+++ ..|.++|...+|.+++++++.+.+.... ..
T Consensus 222 yl~~l~~lc~~--~g~llI~DEV~tG~Rt~~~~a~~~~gv~PDivt--~gK~lggG~Pi~av~~~~~i~~~~~~~~--~~ 295 (428)
T PRK12389 222 FLEAVNELAHE--AGALVIYDEVITAFRFMYGGAQDLLGVEPDLTA--LGKIIGGGLPIGAYGGRKDIMEQVAPLG--PA 295 (428)
T ss_pred HHHHHHHHHHH--cCCEEEEEccccccccCcchhhHHhCCCCCeee--echhhcCCCceeEEeEHHHHHhhhccCC--Cc
Confidence 8899999999 99999999998744111 111123468764 4798876544788899999887764210 00
Q ss_pred eechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc
Q 017726 231 FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 292 (367)
.. .+ .+..+...+++..++++.+.+++ ..++..++.++|++.|+++
T Consensus 296 ~~----------~~---T~~gnpl~~Aaala~L~~l~~~~---l~~~~~~~g~~l~~~L~~l 341 (428)
T PRK12389 296 YQ----------AG---TMAGNPASMAAGIACLEVLQQEG---VYEKLDRLGAMLEEGILEA 341 (428)
T ss_pred cc----------cc---CCccCHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHH
Confidence 00 12 33466767778888888887654 4557777888888888764
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.4e-13 Score=123.75 Aligned_cols=307 Identities=14% Similarity=0.092 Sum_probs=182.2
Q ss_pred hHHHHHHHccCCCC--C--CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC-------CC-CCeEE
Q 017726 21 PDQVIRAMNRNNED--Y--RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-------SP-GDRII 88 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~--~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~-------~~-gd~vl 88 (367)
.+++.+++.++... + ......+...++.+.+.+..... .+.+.|++||++|++.++.... .+ ..+|+
T Consensus 58 ~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii 136 (422)
T PRK05630 58 HPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKLLNLTDNG-LDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLL 136 (422)
T ss_pred CHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHhhCCCC-cCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 34555555554322 1 11112344567777787776422 2469999999999999886421 12 35788
Q ss_pred EEeCCcchHHHHHHHHHhC-------------CceEEEeCCCCCCCC-------HHHHHHHHhccCCCCccEEEEEec-C
Q 017726 89 SFLIGQFSLLWIDQQQRLN-------------FNVDVVESDWGEGAK-------LDVLASKLAADTAHTIKAICIVHN-E 147 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~~~~d-------~e~l~~~i~~~~~~~~~lv~~~~~-~ 147 (367)
....+|++........ .+ .....+|.+.....+ .+.+++.+. +++.+|++... .
T Consensus 137 ~~~~~yHG~t~~als~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~iAAvi~EPi~q 211 (422)
T PRK05630 137 TWRSGYHGDTFAAMSV-CDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLID----ETVAAIIIEPIVQ 211 (422)
T ss_pred EECCCcCCccHHHhcc-CCCcccccccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHh----hceEEEEEechhc
Confidence 8888888853211111 11 112333333111111 234445454 35678888874 6
Q ss_pred CCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCC-CcceeeeeCHH
Q 017726 148 TATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLP-TGMGIVCASPK 217 (367)
Q Consensus 148 n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~ 217 (367)
...|.+.| +++++++|++ +|+++|+||++...... ........|++++ .|.++|. ..+|.+.++++
T Consensus 212 g~gG~~~~~~~~l~~lr~lc~~--~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDi~t~--gK~l~gG~~p~~av~~~~~ 287 (422)
T PRK05630 212 GAGGMRFHDVALIEGVRTLCDK--HDILLIADEIATGFGRTGELFATLAAGVTPDIMCV--GKALTGGFMSFAATLCTDK 287 (422)
T ss_pred CcCCcccCCHHHHHHHHHHHHH--cCCEEEEecceeCCCcCchhhHHHhcCCCCCeeee--echhhcCccccceeeccHH
Confidence 66777654 7889999999 99999999998533221 1222334788854 7999653 34688999999
Q ss_pred HHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCcc
Q 017726 218 ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKN 296 (367)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~ 296 (367)
+.+.+....... .+..+. .+..+...+++..++++.+.+++ ..++..++.++|++.|+++ ..+.
T Consensus 288 i~~~~~~~~~~~----------~~~h~~--T~~g~Pla~aaa~aaL~~l~~~~---~~~~~~~~g~~l~~~L~~l~~~~~ 352 (422)
T PRK05630 288 VAQLISTPNGGG----------ALMHGP--TFMANPLACAVAHASLEIIETGM---WRKQVKRIEAELIAGLSPLAHLPG 352 (422)
T ss_pred HHHHHhccCCCC----------ccccCC--CCcCCHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHhhcCCC
Confidence 887664211000 001122 34567777788888899887764 3457777888888888765 2222
Q ss_pred ccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 297 CTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
+..-. -.+.++.+.+.+..+...+.+.+.++ |+.+.+. ++.+|+.+.-..++++++
T Consensus 353 v~~vR--g~Gl~~~ie~~~~~~~~~~~~~~~~~-Gl~~~~~-----g~~l~~~PpL~it~~~i~ 408 (422)
T PRK05630 353 VADVR--VLGAIGVVEMEQPVDMEEATQAAVDH-GVWLRPF-----GRLVYVMPPYITTSEQIA 408 (422)
T ss_pred eeeee--ccccEEEEEECCcccHHHHHHHHHHC-CeEEEec-----CCEEEEECCccCCHHHHH
Confidence 22101 13446666663333456788888655 9998642 367999887666665443
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.2e-13 Score=123.03 Aligned_cols=315 Identities=14% Similarity=0.060 Sum_probs=185.7
Q ss_pred hHHHHHHHccCCCC----CCC-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC------C--CCCeE
Q 017726 21 PDQVIRAMNRNNED----YRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL------S--PGDRI 87 (367)
Q Consensus 21 ~~~v~~a~~~~~~~----~~~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~------~--~gd~v 87 (367)
++++.+++.++... +.. ....+...++.++|.+..... .+.+.|++||++|++.++.... . ...+|
T Consensus 68 ~p~v~~Av~~q~~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~I 146 (461)
T PRK07482 68 RTEVAEAIAEQAKELAYYHTYVGHGTEASITLSKRIIDRAPAG-MSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKI 146 (461)
T ss_pred CHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 45566666664332 111 112355667777787776422 2468999999999999886431 1 13568
Q ss_pred EEEeCCcchHHHHHHH--------HHhC---CceEEEeCCCCCC-------------CCHHHHHHHHhccCCCCccEEEE
Q 017726 88 ISFLIGQFSLLWIDQQ--------QRLN---FNVDVVESDWGEG-------------AKLDVLASKLAADTAHTIKAICI 143 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~--------~~~g---~~~~~v~~~~~~~-------------~d~e~l~~~i~~~~~~~~~lv~~ 143 (367)
+....+|++....... ...+ ..+..++.+.... .+++.+++.+.....+++.+|++
T Consensus 147 i~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~ 226 (461)
T PRK07482 147 ISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIA 226 (461)
T ss_pred EEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 8888888885321110 0011 1122233221111 13567787775322146788899
Q ss_pred EecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCC-cceeee
Q 017726 144 VHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPT-GMGIVC 213 (367)
Q Consensus 144 ~~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~-g~g~~~ 213 (367)
.......|.+.+ +++|+++|++ +|+++|.||.+..... .........|+++. .|.++|.. .+|.++
T Consensus 227 EPvqg~gG~~~~~~~yl~~lr~lc~~--~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gKgl~gG~~Pi~av~ 302 (461)
T PRK07482 227 EPVLGTGGIVPPPAGYWPAIQAVLKK--YDILLIADEVVTGFGRLGSMFGSDHYGIEPDLITV--AKGLTSAYAPLSGSI 302 (461)
T ss_pred CCccCCCCCcCCCHHHHHHHHHHHHH--hCCEEEEeccccCCCcCcchhhHHhcCCCCCEEEE--ccccccCccccceee
Confidence 888877787764 7789999999 9999999999764322 12222335788887 68887653 578889
Q ss_pred eCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-
Q 017726 214 ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW- 292 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~- 292 (367)
+++++.+.+........ .+..+. .++.+...+++..++++.+.+++ ..++..++.+++.+.|+++
T Consensus 303 ~~~~i~~~~~~~~~~~~---------~~~h~~--T~~gnpl~~Aaa~a~L~~~~~~~---l~~~~~~~g~~l~~~L~~l~ 368 (461)
T PRK07482 303 VGEKVWDVLEQGSDEHG---------AIGHGW--TYSGHPICAAAALANLDILEREN---LVGNAAEVGAYFRARLRAAF 368 (461)
T ss_pred ecHHHHHHHhcccccCC---------ccccCC--CCCcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHH
Confidence 99998776642110000 001121 34567777788888898888775 3445667777888887764
Q ss_pred -CCccccCCCccCCCceEEEEcCCCC------C-----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 293 -GLKNCTQKEEWFSDTVTAVIVPSHI------N-----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 293 -g~~~~~~~~~~~~~~~~~~~~~~~~------~-----~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
...++..-. -.+.++.+.+.++. + ...+++.+.++ ||.+.+.- .++.+|+.+....+++|+.
T Consensus 369 ~~~~~v~~vr--G~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~-Gvl~~~~~---~~~~i~~~Ppl~it~~ei~ 442 (461)
T PRK07482 369 GDHPLVGEVR--GVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALER-GVIARAMP---HGDILGFAPPLVLTRAEAD 442 (461)
T ss_pred hcCCCEEEEe--eceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHC-CcEEecCC---CCCEEEEeCCCCCCHHHHH
Confidence 333322111 13334555552211 1 24577777654 99885421 2467999866666655543
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.4e-14 Score=123.47 Aligned_cols=247 Identities=17% Similarity=0.088 Sum_probs=163.2
Q ss_pred cCCCCCChHHHHHHHccCCCCCC----CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEE
Q 017726 14 VPGPVHIPDQVIRAMNRNNEDYR----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIIS 89 (367)
Q Consensus 14 ~~~p~~~~~~v~~a~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~ 89 (367)
.-|-...++++++++.+....+. +-.......+....-...++...++.+.++++.+.|+..++.++..++ ++++
T Consensus 33 ~lG~s~~~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~~~~~aea~~ivnnn~aAVll~~~al~~~~-EvVi 111 (395)
T COG1921 33 NLGRSLYSPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLCGLTGAEAAAIVNNNAAAVLLTLNALAEGK-EVVV 111 (395)
T ss_pred cCCCccCCHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHhcccchhheeeECCcHHHHHHHHhhhccCC-eEEE
Confidence 34667788888888888544322 111123333444434445566555557888999999999888876644 4444
Q ss_pred EeC-----CcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccc--ccHHHHHHH
Q 017726 90 FLI-----GQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT--NNLSKVRKL 162 (367)
Q Consensus 90 ~~~-----~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~--~~~~~i~~~ 162 (367)
... ++| +....++..|++++++... +.....+++.+|.+ ++++++-++.+|. |.. .+.+++.++
T Consensus 112 s~g~lV~gg~~--~v~d~~~~aG~~l~EvG~t--n~t~~~d~~~AIne----~ta~llkV~s~~~-~f~~~l~~~~l~~i 182 (395)
T COG1921 112 SRGELVEGGAF--RVPDIIRLAGAKLVEVGTT--NRTHLKDYELAINE----NTALLLKVHSSNY-GFTGMLSEEELVEI 182 (395)
T ss_pred EccccccCCCC--ChhHHHHHcCCEEEEeccc--CcCCHHHHHHHhcc----CCeeEEEEeeccc-cccccccHHHHHHH
Confidence 322 233 3567889999999988754 34578999999995 5588877777765 433 578899999
Q ss_pred HHhcCCCcEEEEeeeeccCcee-e---ccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHH
Q 017726 163 LDEYRHPALFLVDGVSSICAID-F---RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYI 238 (367)
Q Consensus 163 ~~~~~~~~~vi~D~~~~~~~~~-~---~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (367)
||+ +|+++++|.+++..... . ..-..|+|++++|+.|.|+||. .|+++++++++++++.....
T Consensus 183 a~~--~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgGPq-aGii~GkKelI~~lq~~~l~---------- 249 (395)
T COG1921 183 AHE--KGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGGPQ-AGIIVGKKELIEKLQSHPLK---------- 249 (395)
T ss_pred HHH--cCCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcCCCc-cceEechHHHHHHHHhhhhh----------
Confidence 999 99999999998653211 1 1223489999999999998888 59999999999988753211
Q ss_pred HHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Q 017726 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA 291 (367)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 291 (367)
..+ ...-..++++.++|+.+..........+..+......+.|.+
T Consensus 250 Ral--------rv~K~tla~l~~aLe~y~~~~~~~~~~~~~~~l~~~~~~l~~ 294 (395)
T COG1921 250 RAL--------RVDKETLAALEAALELYLQPEILGERLRTLRLLTQPAEALLA 294 (395)
T ss_pred hhh--------hcCcHhHHHHHHHHHHHcCchhhhhhhHHHHhhccHHHHHHH
Confidence 111 233345588999999887653222233333333344444444
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-12 Score=120.79 Aligned_cols=308 Identities=15% Similarity=0.140 Sum_probs=183.6
Q ss_pred hHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCc
Q 017726 21 PDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQ 94 (367)
Q Consensus 21 ~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~ 94 (367)
.+++.+++.++... ...........++.+.+.+...... +.+.|++||++|++.++... .....+|+....+|
T Consensus 71 ~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~y 149 (457)
T PRK05639 71 HPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPIEN-PKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAY 149 (457)
T ss_pred CHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHhhCCCCc-CEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCc
Confidence 45566666654332 1112223455677788887765332 36999999999999988642 23445788888888
Q ss_pred chHHHHHHHH-------HhCC-----ceEEEeCCCCCC--------CCH--------HHHHHHHhcc--CCCCccEEEEE
Q 017726 95 FSLLWIDQQQ-------RLNF-----NVDVVESDWGEG--------AKL--------DVLASKLAAD--TAHTIKAICIV 144 (367)
Q Consensus 95 ~~~~~~~~~~-------~~g~-----~~~~v~~~~~~~--------~d~--------e~l~~~i~~~--~~~~~~lv~~~ 144 (367)
++........ ..+. .+..+|.+.... -+. +.+++.+.+. ..+++.+|++.
T Consensus 150 HG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~E 229 (457)
T PRK05639 150 HGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAE 229 (457)
T ss_pred CCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEC
Confidence 8854211111 0111 233444432111 022 2344444221 11567889999
Q ss_pred ecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCCcceeeeeC
Q 017726 145 HNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPTGMGIVCAS 215 (367)
Q Consensus 145 ~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~ 215 (367)
......|.+.| +++++++|++ +|+++|+||+++..... .......+|+++ .+|.+++..++|.++++
T Consensus 230 Piqg~gG~~~p~~~yl~~l~~lc~~--~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~gG~pi~av~~~ 305 (457)
T PRK05639 230 PIQGDAGIVVPPENFFKELKKLLDE--HGILLVMDEVQTGIGRTGKWFASEWFEVKPDLII--FGKGVASGMGLSGVIGR 305 (457)
T ss_pred CccCCCCCcCCCHHHHHHHHHHHHH--cCCEEEEechhhccCcCchHHHHHhcCCCCCEEE--echhhcCCCcceeEEeh
Confidence 88887888765 7789999999 99999999998732211 121223578888 48999866668999999
Q ss_pred HHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--C
Q 017726 216 PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--G 293 (367)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g 293 (367)
+++.+ .... . +. . .+..+...+++..++++.+.+++ ..++..++.++|++.|+++ +
T Consensus 306 ~~i~~-~~~~---~-~~-----------~---T~~g~p~~~aaa~a~l~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~ 363 (457)
T PRK05639 306 KELMD-LTSG---S-AL-----------L---TPAANPVISAAAEATLEIIEEEN---LLKNALKVGEFIKKRLLEMKES 363 (457)
T ss_pred HHHHh-hcCC---C-cc-----------c---CCCcCHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHHHh
Confidence 99876 2211 0 00 1 22355666677777888887764 3456666888888888774 3
Q ss_pred CccccCCCccCCCceEEEEcCC--CC-C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 294 LKNCTQKEEWFSDTVTAVIVPS--HI-N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~--~~-~---~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
+.++..-. -.+.++.+.+.+ .. + ...+.+.+.++ |+.+.+. +..++.+|+.+....+++|++
T Consensus 364 ~~~~~~Vr--G~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~-Gv~~~~~--g~~~~~lr~~Ppl~it~~~id 431 (457)
T PRK05639 364 FEVIGDVR--GKGLMIGVEIVKENGKPDPELTGKICWRAFEL-GLILPSY--GMFGNVIRITPPLVITKEIAE 431 (457)
T ss_pred CCCEEeec--cceeEEEEEEecCCCCCCHHHHHHHHHHHHhC-CeEEeec--CCCCCEEEEeCCCccCHHHHH
Confidence 44433211 122344444311 11 1 24567777654 9998653 122468999987777766544
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-12 Score=122.27 Aligned_cols=314 Identities=16% Similarity=0.120 Sum_probs=188.2
Q ss_pred hHHHHHHHccCCCC--CCC---CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC------C-C-CCeE
Q 017726 21 PDQVIRAMNRNNED--YRS---PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL------S-P-GDRI 87 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~~---~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~------~-~-gd~v 87 (367)
.+++.+++.++... +.. ....+...++.++|.++...+ .+.+.|++||++|++.++.... . + ..+|
T Consensus 64 ~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~ki 142 (459)
T PRK05965 64 QESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAPGS-LNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQF 142 (459)
T ss_pred CHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEE
Confidence 56677777775432 111 111344557777777776322 2469999999999999886421 1 2 3578
Q ss_pred EEEeCCcchHHHHHHHH--------HhC---CceEEEeCCCCC----CCC--------HHHHHHHHhccCCCCccEEEEE
Q 017726 88 ISFLIGQFSLLWIDQQQ--------RLN---FNVDVVESDWGE----GAK--------LDVLASKLAADTAHTIKAICIV 144 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~--------~~g---~~~~~v~~~~~~----~~d--------~e~l~~~i~~~~~~~~~lv~~~ 144 (367)
+....+|++........ ..+ ..+..++.+... .-| ++++++.+++...+++.+|++.
T Consensus 143 i~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvE 222 (459)
T PRK05965 143 ISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCE 222 (459)
T ss_pred EEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEe
Confidence 88888888853211110 011 112233322111 112 2567777765322467889999
Q ss_pred ecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCC-cceeeee
Q 017726 145 HNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPT-GMGIVCA 214 (367)
Q Consensus 145 ~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~-g~g~~~~ 214 (367)
......|.+.+ +++++++|++ ||+++|.||++...... ........|+++. .|.++|.. .+|.+++
T Consensus 223 Piqg~gG~~~p~~~yl~~lr~lc~~--~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gKgl~gG~~Pi~av~~ 298 (459)
T PRK05965 223 PIQGSGGVIVPPKGWLKAMREACRE--LGILFVADEVITGFGRTGPLFACEAEGVVPDLMTV--AKGLTSGYVPMGAVLM 298 (459)
T ss_pred ccccCCCCccCCHHHHHHHHHHHHH--cCCEEEEechhccCccCchhhhHhhcCCCCCeEEe--chhhccCCcceeEEEE
Confidence 88888888765 7789999999 99999999997643211 1222335788887 68887762 5899999
Q ss_pred CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-C
Q 017726 215 SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-G 293 (367)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g 293 (367)
++++.+.+........ .+..+. .++.+...+++..++++.+++++ ..++..+..++|.+.|+++ .
T Consensus 299 ~~~i~~~~~~~~~~~~---------~~~h~~--T~~gnpl~~Aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~l~~l~~ 364 (459)
T PRK05965 299 SDHVYQGIADGAGAAA---------PVGHGY--TYSAHPVSAAVGLEVLRLYHEGG---LLANGQKAGPRFAAGLDALRA 364 (459)
T ss_pred cHHHHHHHhccccccc---------cccccC--CCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhhcc
Confidence 9999876643110000 000121 33466667777888888888775 4456778888888888876 3
Q ss_pred CccccCCCccCCCceEEEEcCCCC------C-----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 294 LKNCTQKEEWFSDTVTAVIVPSHI------N-----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~------~-----~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
..++..-. -.+.++.+.+.++. + ...+.+.+.++ ||.+.+. .+..+|+.+....+++++.
T Consensus 365 ~~~v~~vr--G~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~-Gll~~~~----g~~~i~~~PpL~it~~ei~ 435 (459)
T PRK05965 365 HPLVGDVR--GRGLLGALELVADKATKTPFDAALDPADRIFDRAYAN-GLVFRAF----GDGVLGFAPALCCTEGEFD 435 (459)
T ss_pred CCCEEEEe--ecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhC-CeEEEec----CCcEEEEECCCcCCHHHHH
Confidence 33322111 13334445442110 1 23466666654 9988642 2356999876666655444
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-12 Score=122.24 Aligned_cols=307 Identities=14% Similarity=0.065 Sum_probs=183.1
Q ss_pred hHHHHHHHccCCCC--CCC-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCcc
Q 017726 21 PDQVIRAMNRNNED--YRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQF 95 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~~ 95 (367)
.+++.+++.++... +.. ....+...++-++|.++.... .+.+.|++||++|+..++... .....+|+....+|+
T Consensus 71 ~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yH 149 (451)
T PRK06062 71 HPKVVAAIQEQAARLCTVAPAHANDARSEAARLIAERAPGD-LSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYH 149 (451)
T ss_pred CHHHHHHHHHHHHhcCCcCCccCCHHHHHHHHHHHHhCCCC-CCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCC
Confidence 35566666654332 111 112344567777777776422 246999999999999988642 233457888888888
Q ss_pred hHHHHHHHHHhCC-----------ceEEEeCCCCCC------CC-------HHHHHHHHhccCCCCccEEEEEecCCCcc
Q 017726 96 SLLWIDQQQRLNF-----------NVDVVESDWGEG------AK-------LDVLASKLAADTAHTIKAICIVHNETATG 151 (367)
Q Consensus 96 ~~~~~~~~~~~g~-----------~~~~v~~~~~~~------~d-------~e~l~~~i~~~~~~~~~lv~~~~~~n~tG 151 (367)
+.....+.. .+. .+..++.+.... -| +++++++++....+++.+|++.......|
T Consensus 150 G~t~~als~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG 228 (451)
T PRK06062 150 GGTGSAINL-TGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAG 228 (451)
T ss_pred CCCHHHHhh-cCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCC
Confidence 864211111 110 122232221111 12 56778888643214678899998888889
Q ss_pred cccc----HHHHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCC-cceeeeeCHHHHHH
Q 017726 152 VTNN----LSKVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPT-GMGIVCASPKALEA 221 (367)
Q Consensus 152 ~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~-g~g~~~~~~~~~~~ 221 (367)
.+.| +++++++|++ +|+++|+||+++..... ........|++++ .|.+++.. .+|.+++++++.+.
T Consensus 229 ~~~p~~~yl~~lr~lc~~--~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~t~--gK~lggG~~Pigav~~~~~i~~~ 304 (451)
T PRK06062 229 ILVPPPGYLAGVRELCDR--HGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLITF--AKGVNSGYVPLGGVAISEAIAAT 304 (451)
T ss_pred cccCCHHHHHHHHHHHHH--cCCEEEeeccccCCCcCcHHHHHHhcCCCCCeeee--chhhhcCCcCcEEEEEcHHHHHH
Confidence 8887 8999999999 99999999998743221 1222335787755 79997642 47888899988776
Q ss_pred hccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHH-HHHHHHHHHc--CCcccc
Q 017726 222 SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLG-KATRLAVEAW--GLKNCT 298 (367)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~-~~l~~~L~~~--g~~~~~ 298 (367)
+.... +..+. .++.+...+++..++|+.+++++ ..++..+.. +++.+.|+++ .++.+.
T Consensus 305 ~~~~~--------------~~~~~--T~~gnpl~~Aaa~a~L~~l~~~~---l~~~~~~~G~~~l~~~L~~l~~~~~~v~ 365 (451)
T PRK06062 305 FADRP--------------YPGGL--TYSGHPLACAAAVATINAMEEEG---IVENAARIGAEVLGPGLRELAERHPSVG 365 (451)
T ss_pred hccCC--------------CCCCC--CCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 64210 00121 33456777778888888887765 444556665 4777777664 233322
Q ss_pred CCCccCCCceEEEEcCCC------C--------CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 299 QKEEWFSDTVTAVIVPSH------I--------NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~------~--------~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
.-. -.+.++.+.+.+. . ....+.+.|.+ .||.+.+ .++.+|+++....+++|++
T Consensus 366 ~vr--G~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gvl~~~-----~~~~lrl~ppl~~t~~eid 433 (451)
T PRK06062 366 EVR--GLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKE-RGLLPFV-----NGNRIHVVPPCTVTEDEVR 433 (451)
T ss_pred eEe--ccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHH-CCcEEee-----cCCEEEEECCccCCHHHHH
Confidence 110 1233444444111 0 12367777765 4998754 2457999876666655443
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-13 Score=125.53 Aligned_cols=312 Identities=12% Similarity=0.081 Sum_probs=180.1
Q ss_pred hHHHHHHHccCCCCCCC-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCcchH
Q 017726 21 PDQVIRAMNRNNEDYRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQFSL 97 (367)
Q Consensus 21 ~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~~~~ 97 (367)
.+.+.+++.+....... ........++-+.+.+.+.... +.+.|++||++|+..++... .....+|+....+|++.
T Consensus 71 ~p~v~~ai~~q~~~~~~~~~~~~~~~~la~~L~~~~~~~~-~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~ 149 (433)
T PRK00615 71 HPKICDAIQQGAERGTSYGLTSEQEILFAEELFSYLGLED-HKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGH 149 (433)
T ss_pred CHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhCCCCc-CEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCC
Confidence 45556555554332111 1122445677777777775332 36999999999999988642 22345677777777774
Q ss_pred H-H-HHHHHHhCCc---eEE-E--eC-CCC----CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccH----HHHH
Q 017726 98 L-W-IDQQQRLNFN---VDV-V--ES-DWG----EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL----SKVR 160 (367)
Q Consensus 98 ~-~-~~~~~~~g~~---~~~-v--~~-~~~----~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~----~~i~ 160 (367)
. + .......+-. ... . +. ... ..-|++++++.+.+.. +++.+|++.......|.+.|. ++|+
T Consensus 150 td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~aavI~Epv~~~~G~~~p~~~yl~~l~ 228 (433)
T PRK00615 150 ADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLG-HRVAGVIFEPICANMGVVLPKPGFIEGII 228 (433)
T ss_pred CcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcC-CceEEEEECCCCCCCCcccCCHHHHHHHH
Confidence 2 1 0111111100 000 0 00 000 0126889999987544 467788888888888988874 5999
Q ss_pred HHHHhcCCCcEEEEeeeeccCce--e--eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHH
Q 017726 161 KLLDEYRHPALFLVDGVSSICAI--D--FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 161 ~~~~~~~~~~~vi~D~~~~~~~~--~--~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (367)
++|++ ||+++|+|+++...-. . ........|+++ .+|.++|...+|.+++++++.+.+... ...+.
T Consensus 229 ~lc~~--~g~llI~DEv~tG~R~G~~ga~~~~gv~PDi~~--~gK~lggG~p~~av~~~~~i~~~~~~~--~~~~~---- 298 (433)
T PRK00615 229 QTCRR--TGSLSIMDEVVTGFRVAQGGAAAIYHVKPDITV--YGKILGGGLPAAAVVAHKSIMDHLAPE--GTIFQ---- 298 (433)
T ss_pred HHHHH--cCCEEEEEcccccccccHhHHHHhcCCCCCeEE--EcccccCCcceeeeeecHHHHhhhcCC--CCccc----
Confidence 99999 9999999999852211 0 111123468876 589997543369999999998777431 00000
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH----cCCccccCCCccCCCceEEEE
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA----WGLKNCTQKEEWFSDTVTAVI 312 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~~~~~~ 312 (367)
.+ .+..+...+++..++++.+++++ ..++..++.++|.+.|++ .|+++... +.+.++.+.
T Consensus 299 ------~~---T~~g~p~~~aa~la~L~~i~~~~---~~~~~~~~g~~l~~~l~~~~~~~g~~v~~~----r~G~~~~i~ 362 (433)
T PRK00615 299 ------AG---TLSGNPLAMAAGKASINLCREQG---FYTQLSTLEQNFLSPIEEMIRSQGFPVSLV----RYGSMFSFF 362 (433)
T ss_pred ------CC---CCcccHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHcCCCeEEE----eeceEEEEE
Confidence 12 23456667788888888887654 355666666777666655 35553222 233455555
Q ss_pred cCCCC----------C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 313 VPSHI----------N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 313 ~~~~~----------~---~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
+.+.. + ...+.+.|.++ ||.+.+...+. .+++. ....++.|...++++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~~~--~~ls~--~ht~~did~~~~a~~ 423 (433)
T PRK00615 363 FNENRPNNLAEAQLSDIEAFQTFYQSAFSK-GVYLSPSPFEA--SFLSS--AHSMENLDYAQNVLI 423 (433)
T ss_pred EeCCCCCChHHHhhCCHHHHHHHHHHHHHC-CeeecCccccc--cceec--CCCHHHHHHHHHHHH
Confidence 52210 1 12577777655 99987654322 23333 334455555555554
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-13 Score=123.10 Aligned_cols=238 Identities=13% Similarity=0.088 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEecCChh---HHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEe
Q 017726 40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGT---GAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVE 114 (367)
Q Consensus 40 ~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt---~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~ 114 (367)
..+..-++...++++.|.+-.. .-+-.+++ +|+.++.+.--.+.++|+++..-|+.+. ....+...|++++.++
T Consensus 108 ~Lq~lfe~Qs~i~eLTGmdvaN-aSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~ 186 (429)
T PF02347_consen 108 RLQALFEYQSMICELTGMDVAN-ASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVP 186 (429)
T ss_dssp HHHHHHHHHHHHHHHHTSSEE--SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-
T ss_pred HHHHHHHHHHHHHHhhCCCccC-CCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEec
Confidence 4566779999999999998432 23445555 4444444433344568999998888765 3345666799999999
Q ss_pred CCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeee--ccCceeeccccccc
Q 017726 115 SDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVS--SICAIDFRMDEWGI 192 (367)
Q Consensus 115 ~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~--~~~~~~~~~~~~~~ 192 (367)
.++++..| + +++..|++.+| |..|.+.++++|.+++|+ +|+++++ .+. +++.+ -+..++|+
T Consensus 187 ~~~~~~~d--------~----~~~a~v~vq~P-n~~G~~ed~~~i~~~~h~--~gal~~~-~ad~~aL~~l-~~Pge~GA 249 (429)
T PF02347_consen 187 LDEDGTTD--------D----DDTAAVMVQNP-NTFGVFEDIKEIADIAHA--AGALVIV-GADPNALGGL-KSPGEYGA 249 (429)
T ss_dssp BBTTCSB---------S----TTEEEEEEESS--TTSB--THHHHHHHHHH--TT-EEEE-CGGCCGCCTC---GGGGT-
T ss_pred ccccCCcc--------c----cCeEEEEeecC-CCCceEeeHHHHHHHHHH--cCCEEEE-ecCHHHHhCc-CChhhcCc
Confidence 88776555 3 46788988887 589999999999999999 9999887 443 22222 24456799
Q ss_pred eEEEecCCCcccCC-----CcceeeeeCHHHHHHhccCCCC---------ceeechH--HHHHHhhcCCccCCCCcHHHH
Q 017726 193 DVALTGSQKALSLP-----TGMGIVCASPKALEASKTAKSV---------RVFFDWK--DYIKFYNLGTFWPYTPSIQLL 256 (367)
Q Consensus 193 d~~~~s~~K~~~g~-----~g~g~~~~~~~~~~~~~~~~~~---------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 256 (367)
|+++++ +|.|+.| ++.|++.++++++++++....+ .+.+.++ ++..+-+..+...-|...+..
T Consensus 250 DI~vg~-~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A 328 (429)
T PF02347_consen 250 DIVVGE-HQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLA 328 (429)
T ss_dssp SEEEEC-CTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHH
T ss_pred cEEeeC-CCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHH
Confidence 999776 7877544 5579999999998888764331 1222222 233333444311112222222
Q ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCcc
Q 017726 257 YGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKN 296 (367)
Q Consensus 257 ~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~ 296 (367)
.+....+.++..+|++++.++...++.++++.|++. ++.+
T Consensus 329 ~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~ 369 (429)
T PF02347_consen 329 LAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIYGLPF 369 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBECS
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 233344556778899999999999999999999997 4433
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-12 Score=120.94 Aligned_cols=289 Identities=12% Similarity=0.041 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC-------CCCCe-EEEEeCCcchHHHHHHHHHhCCc---
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-------SPGDR-IISFLIGQFSLLWIDQQQRLNFN--- 109 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~-------~~gd~-vl~~~~~~~~~~~~~~~~~~g~~--- 109 (367)
.+...++.+++++++...- +.+.|++||++|+..++.... .+++. |+....+|++..... ....|.+
T Consensus 97 ~~~~~~lae~L~~~~p~~~-~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~-~s~s~~~~~~ 174 (460)
T PRK12403 97 HPAVIELSELLFSLLPGHY-SHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAA-TALGGMKFMH 174 (460)
T ss_pred CHHHHHHHHHHHHhCCCCc-CEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhh-hhcCCCcccc
Confidence 3556788888888876332 358999999999999887532 23333 444555666653211 1111211
Q ss_pred --------eEEEeCCCCC----CC--------CHHHHHHHHhccCCCCccEEEEEecCCCcccccc----HHHHHHHHHh
Q 017726 110 --------VDVVESDWGE----GA--------KLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDE 165 (367)
Q Consensus 110 --------~~~v~~~~~~----~~--------d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~~i~~~~~~ 165 (367)
+..+|.+... .. +.+++++.+.+...+++.+|++.......|.+.| +++++++|++
T Consensus 175 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~ 254 (460)
T PRK12403 175 EMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQ 254 (460)
T ss_pred ccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHH
Confidence 2333322110 11 1355666664322146778888888888898887 8999999999
Q ss_pred cCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCC-cceeeeeCHHHHHHhccCCCCceeechHHHHH
Q 017726 166 YRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPT-GMGIVCASPKALEASKTAKSVRVFFDWKDYIK 239 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (367)
+|+++|+||+++..... ........|+++ ..|.++|.. .+|.+++++++.+.+.... ..+
T Consensus 255 --~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~--~gK~lggG~~Piga~v~~~~i~~~~~~~~-~~~--------- 320 (460)
T PRK12403 255 --YDVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLS--IAKGLTSGYVPMGGLVLSKRIAEALVEQG-GVF--------- 320 (460)
T ss_pred --cCCEEEEeccccCCCcCchhhhhhhcCCCCCeEE--EcccccccccceEEEEECHHHHHHHhcCC-Ccc---------
Confidence 99999999998643221 122223468886 579887652 4688889988877664210 000
Q ss_pred HhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHc--CCccccCCCccCCCceEEEEcCCC
Q 017726 240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHR-RLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSH 316 (367)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~-~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~ 316 (367)
..++ .+..+...+++..++|+.+++++ ..++.. ++.++|++.|+++ ...++..-. -.+.+..+.+.+.
T Consensus 321 --~~~~--T~~gnPl~~Aaala~L~~i~~~~---l~~~~~~~~g~~l~~~L~~l~~~~~~i~~vr--G~Gl~~gie~~~~ 391 (460)
T PRK12403 321 --AHGL--TYSGHPVAAAVAIANLKALRDEG---VVTRVKDDTGPYLQRCLREVFGDHPLVGEVQ--GAGLVAALQFAED 391 (460)
T ss_pred --ccCC--CCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHhcCCCEEeEe--ecceEEEEEEccC
Confidence 0111 33467777788888898888765 344554 6777777777664 333333211 1333455544211
Q ss_pred -C-----C-----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 317 -I-----N-----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 317 -~-----~-----~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
. . ...+.+.+.+ .|+.+.+. ++.+|+++.-..+++|+.
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~-----~~~~~l~Ppl~it~~eid 440 (460)
T PRK12403 392 KATRKRFANENDLAWRCRTIGFE-EGVIIRST-----LGRMIMAPALVAGRAEID 440 (460)
T ss_pred ccccccccchhHHHHHHHHHHHh-CCEEEEec-----CCEEEEECCCCCCHHHHH
Confidence 0 1 1123344444 49988642 245899887766655443
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-13 Score=114.54 Aligned_cols=301 Identities=21% Similarity=0.201 Sum_probs=196.8
Q ss_pred CChHHHHHHHccCCCCC--CCC-cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-----C-C--C-CCe
Q 017726 19 HIPDQVIRAMNRNNEDY--RSP-AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-----L-S--P-GDR 86 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~--~~~-~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-----~-~--~-gd~ 86 (367)
.-.+.++++++++...- .+. .+.+...++.+.+.++++.+. ++-++.|.+|.+.++... . . | ...
T Consensus 75 hchpki~~aLqeq~~kLtlssrafYnd~~~~f~~~vt~lf~~~k---vlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka 151 (427)
T KOG1402|consen 75 HCHPKIIKALQEQADKLTLSSRAFYNDVLGEFAEYVTKLFGYDK---VLPMNTGAEAVETACKLARKWGYRKKNIPKNKA 151 (427)
T ss_pred CCCHHHHHHHHHHHhHhhhhhHHHhhhhHHHHHHHHHHhcCcce---eeecccchhHHHHHHHHHHHHHHhhccCCccce
Confidence 44677888888865531 111 245778899999999999766 788899999999877531 1 1 2 223
Q ss_pred EEEEeCCcchHH-HH--------HHHHHhCC----ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccc
Q 017726 87 IISFLIGQFSLL-WI--------DQQQRLNF----NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT 153 (367)
Q Consensus 87 vl~~~~~~~~~~-~~--------~~~~~~g~----~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~ 153 (367)
+++...+.|.-+ .. ..-+..|- .+..||.+ |.++++.++++ ++.+.+++...+--.|.+
T Consensus 152 ~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y~-----d~eale~~l~~---~~vaaFivEPIQGEaGVv 223 (427)
T KOG1402|consen 152 KILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYG-----DAEALEVALKS---PNVAAFIVEPIQGEAGVV 223 (427)
T ss_pred eEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeeccC-----CHHHHHHHhcC---CCeeEEEeeccccccceE
Confidence 343333333222 10 00111221 13334433 78999999986 688999999999999999
Q ss_pred cc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCC-CcceeeeeCHHHHHHhc
Q 017726 154 NN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASK 223 (367)
Q Consensus 154 ~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~ 223 (367)
.| +++++++|++ ||+++|.|+.|+..+. ..+..+...|+++. .|.++|. ...+.+.+++++.-.+.
T Consensus 224 vP~~GYL~~vreLCtk--ynvl~I~DEvQTGl~RTGk~la~d~env~PDivil--gKalSGG~~Pvsavl~~~~im~~~~ 299 (427)
T KOG1402|consen 224 VPPPGYLKKVRELCTK--YNVLLIADEVQTGLARTGKLLACDYENVRPDIVIL--GKALSGGVYPVSAVLADDDIMLNIK 299 (427)
T ss_pred eCCchhHHHHHHHHHh--hcEEEEehhhhhcccccCcEEEeehhhcCCCeEEE--eccccCCeeeeEEEEecHHHHhccC
Confidence 86 8899999999 9999999999976543 45667777899887 5777664 33577778888866666
Q ss_pred cCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCcc-ccCC
Q 017726 224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKN-CTQK 300 (367)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~-~~~~ 300 (367)
+... |. .+.-|.++....-++++.+.++ ...++...+...|+.+|.++ .++- +..-
T Consensus 300 pgeH----------------gs--TyggNpLg~~vaiAalevi~ee---kL~era~~lG~~l~~~L~~l~~~~p~~v~~V 358 (427)
T KOG1402|consen 300 PGEH----------------GS--TYGGNPLGCAVAIAALEVIVEE---KLVERAAKLGEILRDQLNKLQKKFPHVVKEV 358 (427)
T ss_pred CCcc----------------cc--ccCCChHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhccccccchhhee
Confidence 5432 21 2235566666777788888776 55668888999999999887 3311 2211
Q ss_pred CccCCCceEEEEc-C---CCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHh
Q 017726 301 EEWFSDTVTAVIV-P---SHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQ 362 (367)
Q Consensus 301 ~~~~~~~~~~~~~-~---~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~ 362 (367)
.. + +.+..+.+ | ++.++.++|-.|++. |+...| ..+..||+.+--.++++|+...
T Consensus 359 RG-r-Gl~~ai~i~~~~~~~~~aw~~cl~lk~~-g~LAkp----tH~~IiRfaPPL~I~e~dl~eg 417 (427)
T KOG1402|consen 359 RG-R-GLLNAIVINPSKTSGQDAWDVCLALKEN-GLLAKP----THGNIIRFAPPLVISEEDLREG 417 (427)
T ss_pred ec-c-ceEEEEEeccccccchhHHHHHHccccc-ccccCC----CCCCeEEecCCcccCHHHHHHH
Confidence 10 1 22222222 1 235677888888654 776543 3467899998778877776543
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-12 Score=119.57 Aligned_cols=308 Identities=13% Similarity=0.114 Sum_probs=178.7
Q ss_pred hHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHhcCC-C-CceEEecCChhHHHHHHHHcc--CCCCCeEEEEeC
Q 017726 21 PDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTT-S-GTPFLIPTTGTGAWESALTNT--LSPGDRIISFLI 92 (367)
Q Consensus 21 ~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~~~~-~-~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~ 92 (367)
++++.+++.++... +......+...++.++|.++.... . ...+.+++||++|+..++... .....+|+....
T Consensus 57 ~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~ 136 (442)
T TIGR00709 57 HPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSG 136 (442)
T ss_pred CHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence 45566666664332 211122355667777787776432 1 122455689999999988642 233457888888
Q ss_pred CcchHHHHHHHHH------hC-----CceEEEeCCCCCCC--------CH----HHHHHHHhc---cCCCCccEEEEEec
Q 017726 93 GQFSLLWIDQQQR------LN-----FNVDVVESDWGEGA--------KL----DVLASKLAA---DTAHTIKAICIVHN 146 (367)
Q Consensus 93 ~~~~~~~~~~~~~------~g-----~~~~~v~~~~~~~~--------d~----e~l~~~i~~---~~~~~~~lv~~~~~ 146 (367)
+|++......+.. .+ ..+..++.+..... +. +.+++.+.+ .. .++.+|++...
T Consensus 137 ~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iaavi~Epi 215 (442)
T TIGR00709 137 GFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGV-DKPAAVILEAI 215 (442)
T ss_pred CcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCC-CceEEEEEccc
Confidence 8888642111110 11 11333333221111 11 123344431 11 35788888888
Q ss_pred CCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCcee---e--ccccccceEEEecCCCcccCCCcceeeeeCHH
Q 017726 147 ETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAID---F--RMDEWGIDVALTGSQKALSLPTGMGIVCASPK 217 (367)
Q Consensus 147 ~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~~---~--~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~ 217 (367)
.+..|.+.+ +++++++|++ +|+++|.||++...... + .......|+++. +|.+++...+|.++++++
T Consensus 216 ~g~~G~~~~~~~yl~~lr~lc~~--~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gK~l~~G~Pigav~~~~~ 291 (442)
T TIGR00709 216 QGEGGVVAAPSEWLQKIREVTRK--HDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVM--SKAVGGGLPLAVLLIAPE 291 (442)
T ss_pred cCCCCCccCCHHHHHHHHHHHHH--cCCEEEEeccccCCCCCCchhHHHHcCCCCcEEEE--cccccCCcccEEEEEchH
Confidence 887787753 7889999999 99999999998643221 1 112234788885 788876555799999888
Q ss_pred HHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCc
Q 017726 218 ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLK 295 (367)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~ 295 (367)
.+.+.... . +. .+..+...+++..++++.+.+++ ..++.+++.++|.+.|+++ .++
T Consensus 292 -~~~~~~~~---------------~-~~--T~~gnpla~aaa~a~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~ 349 (442)
T TIGR00709 292 -FDAWQPAG---------------H-TG--TFRGNQLAMVTGTEALNYWKDDN---LAQNAQERGERITSFLDDMIKEHP 349 (442)
T ss_pred -HhccCCCc---------------C-CC--CCCcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44442110 0 11 33566767777788888877765 3447777888888888874 344
Q ss_pred cccCCCccCCCceEEEEcCCCC--------------CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 296 NCTQKEEWFSDTVTAVIVPSHI--------------NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
++..-. -.+.++.+.+.+.. -...+.+.+.+ +||.+.+.. ..++.+|+.+....+++++.
T Consensus 350 ~v~~vr--G~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~~--~~~~~l~~~Ppl~it~~ei~ 423 (442)
T TIGR00709 350 CIGNVR--GRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFE-NGLLLETGG--REGEVFRLLCPITIDQEECE 423 (442)
T ss_pred Ceeeee--ccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHH-CCeEEeecC--CCCCEEEEECCCCCCHHHHH
Confidence 333211 13335555552210 02346666654 599886531 12578999877766665544
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-12 Score=120.98 Aligned_cols=311 Identities=14% Similarity=0.070 Sum_probs=185.4
Q ss_pred hHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC--------CCCCeEE
Q 017726 21 PDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--------SPGDRII 88 (367)
Q Consensus 21 ~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~--------~~gd~vl 88 (367)
.+++.+++.++... .......+...++.+++.++.... .+.+.|++||++|++.++.... ....+|+
T Consensus 65 ~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii 143 (466)
T PRK07030 65 NPRINQRIKDQVDQLEHVILAGFSHEPVIELSERLVKITPPG-LSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFV 143 (466)
T ss_pred CHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 45566666554322 111122355667777787766422 2469999999999999886431 1235688
Q ss_pred EEeCCcchHHHHHHHHHhCC------------ceEEEeCCCCCC------------CCHHHHHHHHhccCCCCccEEEEE
Q 017726 89 SFLIGQFSLLWIDQQQRLNF------------NVDVVESDWGEG------------AKLDVLASKLAADTAHTIKAICIV 144 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~------------~d~e~l~~~i~~~~~~~~~lv~~~ 144 (367)
....+|++....... ..+. .+..+|.+.... -+++.+++.+.+.. +++.+|++.
T Consensus 144 ~~~~~yHG~t~ga~s-~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~-~~iAAvi~E 221 (466)
T PRK07030 144 TLTNSYHGETLAAMS-VGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHH-DEIAAVIVE 221 (466)
T ss_pred EECCCcCcccHHHHh-ccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCC-CceEEEEEe
Confidence 888888875421111 1111 122333222110 12466777776544 567888888
Q ss_pred e-cCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCC-Ccceeee
Q 017726 145 H-NETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLP-TGMGIVC 213 (367)
Q Consensus 145 ~-~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~ 213 (367)
. .....|.+.+ +++++++|++ +|+++|.||.+...... ........|++++ .|.++|. ..+|.++
T Consensus 222 P~iqg~gG~~~~~~~yl~~lr~lc~~--~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~~--gKgl~gG~~Pi~av~ 297 (466)
T PRK07030 222 PLIQGAGGMRMYHPVYLKLLREACDR--YGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLCL--SKALTGGYLPLAAVL 297 (466)
T ss_pred cccccCCCcccCCHHHHHHHHHHHHH--cCCEEEEeehhhCcCccccchHHHhcCCCCCEEee--ehhccCCcccceEEE
Confidence 7 4677787765 7789999999 99999999997633211 1222345788888 6888766 2579999
Q ss_pred eCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-
Q 017726 214 ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW- 292 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~- 292 (367)
+++++.+.+........ .+..+. .++.+...+++..++++.+.+++ +.++..++.++|.+.|+++
T Consensus 298 ~~~ei~~~~~~~~~~~~---------~~~h~~--T~~gnpla~aaa~a~L~~i~~~~---l~~~~~~~G~~l~~~L~~l~ 363 (466)
T PRK07030 298 TTDTVYQAFYDDYPTLR---------AFLHSH--SYTGNPLACAAALATLDIFEQDN---VIENNRALARRMAEATAHLA 363 (466)
T ss_pred ecHHHHHHHhccccccc---------ccccCC--CCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHh
Confidence 99998876642100000 000121 33466777788888888888765 4457778888888888876
Q ss_pred CCccccCCCccCCCceEEEEcCCCC--------C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 293 GLKNCTQKEEWFSDTVTAVIVPSHI--------N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 293 g~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
..+.+..-. -.+.++.+.+.++. + ...+.+.+.++ |+.+.+. +..+|+.+....+++|+.
T Consensus 364 ~~~~v~~vr--G~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~-Gvl~~~~-----g~~i~~~Ppl~it~~eid 434 (466)
T PRK07030 364 DHPHVAEVR--QTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALER-GALLRPL-----GSVVYFLPPYVITPEQID 434 (466)
T ss_pred cCCCEEEeE--eceeEEEEEeccCccccccCcchhHHHHHHHHHHHHC-CeEEEec-----CCEEEEECCccCCHHHHH
Confidence 333222111 13334555442111 0 13567777654 9988642 357999866666655443
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-12 Score=119.84 Aligned_cols=311 Identities=14% Similarity=0.091 Sum_probs=184.6
Q ss_pred hHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC-------CC-CCeEE
Q 017726 21 PDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-------SP-GDRII 88 (367)
Q Consensus 21 ~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~-------~~-gd~vl 88 (367)
++++.+++.++... .......+...++.+.|++++...- +.+.|++||++|++.++.... .+ ..+|+
T Consensus 74 ~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~-~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii 152 (460)
T PRK06916 74 VPELDEAIREQLNKIAHSTLLGLANVPSILLAEKLIEVVPEGL-KKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFV 152 (460)
T ss_pred CHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCC-CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 55566666554332 1111123445678888887764321 369999999999999886422 12 35788
Q ss_pred EEeCCcchHHHHHHHHHhC------------CceEEEeCCCCCC------------CCHHHHHHHHhccCCCCccEEEEE
Q 017726 89 SFLIGQFSLLWIDQQQRLN------------FNVDVVESDWGEG------------AKLDVLASKLAADTAHTIKAICIV 144 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~------------~d~e~l~~~i~~~~~~~~~lv~~~ 144 (367)
....+|++...... ...+ ..+..+|.+.... -+++.+++.+++.. +++.+|++.
T Consensus 153 ~~~~~YHG~t~~al-s~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~iAAvi~E 230 (460)
T PRK06916 153 TLKNAYHGDTIGAV-SVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKH-EEIAAIIVE 230 (460)
T ss_pred EECCcCCcccHHhH-hccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCC-CcEEEEEEe
Confidence 88888888532111 1111 1123343321100 13456777776543 567888888
Q ss_pred e-cCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCC-Ccceeee
Q 017726 145 H-NETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLP-TGMGIVC 213 (367)
Q Consensus 145 ~-~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~ 213 (367)
. +....|.+.+ +++++++|++ +|+++|.||++...... ........|+++. .|.++|. ..+|.++
T Consensus 231 P~iqg~gG~~~~~~~fl~~lr~lc~~--~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~~--gK~l~gG~~Pi~av~ 306 (460)
T PRK06916 231 PLVQGAGGMITMPKGYLKGLRNLCTK--YNVLFITDEVATGFGRTGKMFACEHENVTPDIMTA--GKGLTGGYLPIAITV 306 (460)
T ss_pred ccccCCCCcccCCHHHHHHHHHHHHH--cCCEEEeechhhCCCcCchhhHHHhcCCCCCeeee--ehhhhcCccccceee
Confidence 7 5777787764 7789999999 99999999997633211 1222335788865 7888765 3579999
Q ss_pred eCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-
Q 017726 214 ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW- 292 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~- 292 (367)
+++++.+.+....... ..+..+. .++.+...+++..++++.+.+++ ..++..++.+++.+.|+++
T Consensus 307 ~~~ei~~~~~~~~~~~---------~~~~~~~--T~~gnpl~~aaa~a~l~~l~~~~---l~~~~~~~g~~l~~~l~~l~ 372 (460)
T PRK06916 307 TTDEIYNAFYGDYEEQ---------KTFFHGH--SYTGNPLGCAVALANLELYEKTN---LIEQVARKTEYVATQLEDLF 372 (460)
T ss_pred ecHHHHHHhhcccccc---------CccccCC--CCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHhh
Confidence 9999877664211000 0000111 33456666778888888887765 4457788888888888876
Q ss_pred CCccccCCCccCCCceEEEEcCCCC--------C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 293 GLKNCTQKEEWFSDTVTAVIVPSHI--------N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 293 g~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
....+..-. -.+.++.+.+.+.. + ...+.+.+.+ .||.+.+. ++.+|+.+....+++|+.
T Consensus 373 ~~~~v~~vr--G~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~~-----g~~l~~~Ppl~it~~~id 443 (460)
T PRK06916 373 ALKHVGDIR--QLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRE-LGMLTRPL-----GNTIVFMPPLASTIDELD 443 (460)
T ss_pred cCCCeEEee--cCCceeeEEeecccccccCCCchhhHHHHHHHHHHH-CCeEEEec-----CCEEEEeCCcccCHHHHH
Confidence 333222111 12234444441110 1 2357777765 49998652 357999866666655443
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-12 Score=121.13 Aligned_cols=311 Identities=15% Similarity=0.087 Sum_probs=182.5
Q ss_pred hHHHHHHHccCCCC--C--CCCcHHHHHHHHHHHHHHHhcCC----CCceEEecCChhHHHHHHHHccC-------CC-C
Q 017726 21 PDQVIRAMNRNNED--Y--RSPAVPALTKTLLEDIKKIFKTT----SGTPFLIPTTGTGAWESALTNTL-------SP-G 84 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~--~~~~~~~~~~~~~~~la~~~~~~----~~~~v~~~~ggt~al~~~~~~~~-------~~-g 84 (367)
.+++.+++.++... + ......+...++-+.+.+.+... ..+.+.|++||++|+..++.... .+ .
T Consensus 82 ~p~i~~Ai~~q~~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r 161 (472)
T PRK08742 82 EPRIGAAIAAQAGELEQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRR 161 (472)
T ss_pred CHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCC
Confidence 45566666664321 1 11112244567777777776421 22469999999999999886421 12 3
Q ss_pred CeEEEEeCCcchHHHHHHHHHhCC------------ceEEEeCCCCCC------------CCHHHHHHHHhccCCCCccE
Q 017726 85 DRIISFLIGQFSLLWIDQQQRLNF------------NVDVVESDWGEG------------AKLDVLASKLAADTAHTIKA 140 (367)
Q Consensus 85 d~vl~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~------------~d~e~l~~~i~~~~~~~~~l 140 (367)
.+|+....+|++......+. .+. .+..++.+.... .+++.+++.+.... +++.+
T Consensus 162 ~~ii~~~~syHG~t~gals~-~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~iAA 239 (472)
T PRK08742 162 TRFIALENGYHGETIGALAV-GDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQSP-GEICA 239 (472)
T ss_pred cEEEEECCCcCCCchhhhhc-cCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHhCC-CceEE
Confidence 57888888888854211111 111 123343322111 12466777776433 46778
Q ss_pred EEEEe-cCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCC-cc
Q 017726 141 ICIVH-NETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPT-GM 209 (367)
Q Consensus 141 v~~~~-~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~-g~ 209 (367)
|++.. .....|.+.+ +++++++|++ +|+++|.||.+...... +.......|+++. .|.++|.. .+
T Consensus 240 vI~EPviqg~gG~~~~p~~fl~~lr~lc~~--~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~~--gKgl~gG~~Pl 315 (472)
T PRK08742 240 LILEPRLQCAGGMRMHHPAYLRRARELCDA--HGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCL--SKGLTGGFLPL 315 (472)
T ss_pred EEEccccccCCCcccCCHHHHHHHHHHHHH--cCCEEEEechhhCCCCCccchHHHhcCCCCCEEEE--cccccCCCCCc
Confidence 88887 4677787664 7789999999 99999999997643221 2222335788887 68887652 47
Q ss_pred eeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Q 017726 210 GIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAV 289 (367)
Q Consensus 210 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L 289 (367)
|.+++++++.+.+........ +..+. .++.+...+++..++++.+.++++ .++..+..+++.+.+
T Consensus 316 aav~~~~ei~~~~~~~~~~~~----------~~h~~--T~~gnpl~~Aaa~a~L~~i~~~~l---~~~~~~~g~~l~~~~ 380 (472)
T PRK08742 316 SAVLATQQLYDAFLDDSRERA----------FLHSH--SYTGNPLACAAALATLDIFADDDV---IARNQPTAARMTQLA 380 (472)
T ss_pred ceeeccHHHHHHhhccCccCc----------cCcCC--CCCccHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHH
Confidence 999999998776642110000 00121 344667777888888999888764 334555566666555
Q ss_pred HHc-CCccccCCCccCCCceEEEEcCCCC------C-----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHH
Q 017726 290 EAW-GLKNCTQKEEWFSDTVTAVIVPSHI------N-----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV 357 (367)
Q Consensus 290 ~~~-g~~~~~~~~~~~~~~~~~~~~~~~~------~-----~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~ 357 (367)
+.. .+.++..-. -.+.++.+.+.... + ...+.+.+.++ ||.+.+. ++.||+.+....+++
T Consensus 381 ~~~~~~~~i~dvR--G~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~~-----g~vi~~~PpL~it~~ 452 (472)
T PRK08742 381 AQIGEHPHVADVR--QAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALAR-GVVLRPL-----GDVLYWMPPYCVDEA 452 (472)
T ss_pred HHHhcCCCeeeEe--ccceEEEEEeccCccccccCCchhHHHHHHHHHHHHC-CeEEEec-----CCEEEEECCCCCCHH
Confidence 554 333332211 23344555542111 1 13466667654 9998652 368999887777665
Q ss_pred HHH
Q 017726 358 MFN 360 (367)
Q Consensus 358 ~~~ 360 (367)
++.
T Consensus 453 ei~ 455 (472)
T PRK08742 453 QLA 455 (472)
T ss_pred HHH
Confidence 543
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-12 Score=121.81 Aligned_cols=242 Identities=16% Similarity=0.073 Sum_probs=151.3
Q ss_pred HHHHHHHccCCCCCC-CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCcchHH
Q 017726 22 DQVIRAMNRNNEDYR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQFSLL 98 (367)
Q Consensus 22 ~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~~~~~ 98 (367)
+.+.+++.+...... .....+...++.+.|.+.++ .+.+.|++|||+|+..+++.. ....++|+....+|++..
T Consensus 94 p~i~~Av~~q~~~~~~~~~~~~~~~~lAe~l~~~~~---~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~ 170 (453)
T PRK07046 94 APVARALAEQARRGLTTMLPSEDAAWVGEELARRFG---LPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTV 170 (453)
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhC---CCEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCc
Confidence 556666655433211 11123555677888888774 245999999999999988642 234567888888788852
Q ss_pred -HHHHHHHhC----------C------ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----HH
Q 017726 99 -WIDQQQRLN----------F------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LS 157 (367)
Q Consensus 99 -~~~~~~~~g----------~------~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~ 157 (367)
+.......+ . .+..++. -|++.+++.+.. .++.+|++.......|.+.| ++
T Consensus 171 d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----nd~~~l~~~l~~---~~vAavi~EPi~g~~G~~~p~~~fl~ 242 (453)
T PRK07046 171 DDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF-----NDLAALEAALAD---GDVAAVLAEPAMTNIGMVLPEPGFHE 242 (453)
T ss_pred HHhHhhccCCCCCCCCCCCCCCccccCceEeeCC-----CCHHHHHHHhCC---CCeEEEEECCCCCCCCCcCCCHHHHH
Confidence 111110011 1 0111111 278999998853 46788888888777788776 78
Q ss_pred HHHHHHHhcCCCcEEEEeeeec----cCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeec
Q 017726 158 KVRKLLDEYRHPALFLVDGVSS----ICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFD 233 (367)
Q Consensus 158 ~i~~~~~~~~~~~~vi~D~~~~----~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 233 (367)
+++++|++ +|+++|.||+++ .+.. ........|++++ .|.++|...+|.+++++++.+.+..........
T Consensus 243 ~lr~lc~~--~g~llI~DEV~tfr~g~Gg~-~~~~gv~PDi~t~--gK~lggG~Pi~av~g~~~i~~~~~~~~~~~~~~- 316 (453)
T PRK07046 243 ALRELTRR--YGTLLVIDETHTISSGPGGY-TRAHGLEPDFLVV--GKPIAGGVPCAVYGFSAELAERAQAAKASAPPG- 316 (453)
T ss_pred HHHHHHHH--hCCEEEEEccccCccCCcch-hHHhCCCccceee--hhhhcCCCcceeeeehHHHHHHHhhccccCCCC-
Confidence 99999999 999999999985 3321 1111234788765 899987655899999999988775321100000
Q ss_pred hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Q 017726 234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA 291 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 291 (367)
.....+ .+..+...+++..++++.+.+.+ ..++..+..++|++.|++
T Consensus 317 -----~~~~~~---T~~gnpl~~aa~~a~L~~l~~~~---~~~~~~~~g~~l~~~L~~ 363 (453)
T PRK07046 317 -----HSGIGT---TLSANALAMAAMRATLAEVMTEA---AYAHMLALAARLAAGLRA 363 (453)
T ss_pred -----CceeCC---CCcccHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHH
Confidence 000112 33466767777888888876654 355666677777777765
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.3e-13 Score=123.84 Aligned_cols=242 Identities=16% Similarity=0.091 Sum_probs=151.7
Q ss_pred hHHHHHHHccCCCCCCC-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCcchH
Q 017726 21 PDQVIRAMNRNNEDYRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQFSL 97 (367)
Q Consensus 21 ~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~~~~ 97 (367)
++.+.+++.++...... ....+...++-+.+.+.+.. .+.+.|++|||+|++.++... ....++|+....+|++.
T Consensus 117 ~p~v~~av~~ql~~~~~~~~~~~~~~~lAe~l~~~~p~--~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~ 194 (474)
T PLN02482 117 DDEVLAALAETMKKGTSFGAPCLLENVLAEMVIDAVPS--VEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGH 194 (474)
T ss_pred CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCC--CCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCC
Confidence 35666666664432111 11224455677777776642 346999999999999988642 23346788887778874
Q ss_pred H-HHHHHHHhC-----------C------ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----
Q 017726 98 L-WIDQQQRLN-----------F------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---- 155 (367)
Q Consensus 98 ~-~~~~~~~~g-----------~------~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---- 155 (367)
. +.......+ . .+..++. -|++++++.+.++. .++.+|++.......|.+.|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----nd~~~l~~~l~~~~-~~iAavI~Epv~g~~G~i~p~~~f 268 (474)
T PLN02482 195 ADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY-----NDLEAVKKLFEANK-GEIAAVILEPVVGNSGFIVPKKEF 268 (474)
T ss_pred cchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC-----CChHHHHHHHHhCC-CceEEEEECCCCCCCCCcCCCHHH
Confidence 2 111000001 0 0111111 17899999887654 46788888888888898876
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeeccCcee----eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCcee
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSSICAID----FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF 231 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~~~~~~----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~ 231 (367)
+++++++|++ +|+++|+||++...-.. ........|++++ .|.++|...+|.+++++++.+.+... ...+
T Consensus 269 l~~lr~lc~~--~g~lLI~DEV~tGfR~g~~ga~~~~gv~PDi~t~--gK~lggG~Pigav~g~~ei~~~~~~~--~~~~ 342 (474)
T PLN02482 269 LEGLREITKE--NGALLVFDEVMTGFRIAYGGAQEYFGITPDLTTL--GKVIGGGLPVGAYGGRREIMEMVAPA--GPMY 342 (474)
T ss_pred HHHHHHHHHH--cCCEEEEeccccCeecCcchHhHHhCCCCCEEEe--cchhhCCCceEEEEEcHHHHHhhccC--CCcc
Confidence 5589999999 99999999998532111 0111224677654 89997654578889999998877521 0001
Q ss_pred echHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc
Q 017726 232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 292 (367)
. .+ .+..+...+++..++|+.+++.+ ..++..++.++|++.|+++
T Consensus 343 ~----------~~---T~~gnpl~~aAala~L~~l~~~~---~~~~~~~~g~~l~~~L~~l 387 (474)
T PLN02482 343 Q----------AG---TLSGNPLAMTAGIHTLKRLQQPG---TYEYLDKITKKLIQGILEA 387 (474)
T ss_pred c----------cc---CcchhHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHH
Confidence 1 12 22355666677777888886653 4557777788888888765
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-12 Score=113.23 Aligned_cols=318 Identities=15% Similarity=0.084 Sum_probs=196.6
Q ss_pred ccccCCCCCChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHh-cCCC----Cce--EEecCChhHHHHHHHHcc-
Q 017726 11 HLFVPGPVHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIF-KTTS----GTP--FLIPTTGTGAWESALTNT- 80 (367)
Q Consensus 11 ~~~~~~p~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~-~~~~----~~~--v~~~~ggt~al~~~~~~~- 80 (367)
|.+--|-+++-++|.+|-+..... ...|-...+..++.+.+++++ |.+. ..+ -+-|.|||+|+..+...+
T Consensus 36 Y~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~ 115 (396)
T COG1448 36 YKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLA 115 (396)
T ss_pred eeCCCCCcchhHHHHHHHHHhhccccccccCCcCCcHHHHHHHHHHhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHH
Confidence 445567778888888777765443 334555566677777777754 5331 112 267789999999876543
Q ss_pred -CCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHH
Q 017726 81 -LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLS 157 (367)
Q Consensus 81 -~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~ 157 (367)
..+...|-+++|.+..+. .+.+..|.++...+.-+ ...+|.+.+.+.++.-+ ++.-+++-...|||||.-++.+
T Consensus 116 ~~~~~~~vwis~PtW~NH~--~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~-~~~vvLLH~CcHNPTG~D~t~~ 192 (396)
T COG1448 116 RFFPDATVWISDPTWPNHK--AIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAP-EGSVVLLHGCCHNPTGIDPTEE 192 (396)
T ss_pred HhCCCceEEeCCCCcHhHH--HHHHhcCCceeeeeccccccccccHHHHHHHHHhCC-CCCEEEEecCCCCCCCCCCCHH
Confidence 456667999999665543 44567899998887632 34589999988888754 3444455566789999887655
Q ss_pred ---HHHHHHHhcCCCcEEEEeeeeccCceeeccc--------ccc-ceEEEecCCCcccCCCc--c---eeeeeCHHHHH
Q 017726 158 ---KVRKLLDEYRHPALFLVDGVSSICAIDFRMD--------EWG-IDVALTGSQKALSLPTG--M---GIVCASPKALE 220 (367)
Q Consensus 158 ---~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~--------~~~-~d~~~~s~~K~~~g~~g--~---g~~~~~~~~~~ 220 (367)
+|.++.++ .+.+.+.|-+|-.+.--++-+ ..+ --++..|++|.|+ ..| + .++.-+++...
T Consensus 193 qW~~l~~~~~~--r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfg-LYgERVGa~~vva~~~~~a~ 269 (396)
T COG1448 193 QWQELADLIKE--RGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFG-LYGERVGALSVVAEDAEEAD 269 (396)
T ss_pred HHHHHHHHHHH--cCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhh-hhhhccceeEEEeCCHHHHH
Confidence 46666676 999999998875332212111 111 2588889999984 544 3 34444555555
Q ss_pred HhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHH------HHHHhChHHHHHHHHHHHHHHHHHHHHc--
Q 017726 221 ASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALD------LIFEEGLENVIERHRRLGKATRLAVEAW-- 292 (367)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~------~~~~~g~~~~~~~~~~~~~~l~~~L~~~-- 292 (367)
++... .+..--+. ..+|+..+.......|. .++++ +..+++++.+.+..|.+.|++.
T Consensus 270 ~v~sq------------lk~~iR~~--ySnPP~~Ga~vva~IL~~p~Lra~W~~E-l~~Mr~Ri~~mR~~lv~~L~~~~~ 334 (396)
T COG1448 270 RVLSQ------------LKAIIRTN--YSNPPAHGAAVVATILNNPELRAEWEQE-LEEMRQRILEMRQALVDALKALGA 334 (396)
T ss_pred HHHHH------------HHHHHHhc--cCCCchhhHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCC
Confidence 44421 01111111 11344443333332222 12222 7889999999999999999994
Q ss_pred --CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCC-CCHHHHHHhhhhc
Q 017726 293 --GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH-LNEVMFNFQLLFQ 366 (367)
Q Consensus 293 --g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~-~~~~~~~~~~l~~ 366 (367)
.+..+.. +.+ ++++ .|.+.++ +++|+++++|++... + ||+..+- ....+-..+.|.+
T Consensus 335 ~~~f~~i~~----Q~G-MFsy---~Gls~~Q-V~rLree~~IY~v~s------G--Ri~vaGl~~~ni~~va~ai~~ 394 (396)
T COG1448 335 PRNFDFIIS----QRG-MFSY---TGLSPEQ-VDRLREEFGIYLVAS------G--RINVAGLNTSNIDYVAKAIAA 394 (396)
T ss_pred CcccchHhh----cCc-eeec---CCCCHHH-HHHHHHhccEEEecC------C--eeeeccCChhhHHHHHHHHHh
Confidence 3556654 343 4433 2566554 477889999988631 1 8887773 4456666665543
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.4e-13 Score=119.16 Aligned_cols=285 Identities=18% Similarity=0.147 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC-------CCC-CeEEEEeCCcchHHHHHHHHHhC--------
Q 017726 44 TKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-------SPG-DRIISFLIGQFSLLWIDQQQRLN-------- 107 (367)
Q Consensus 44 ~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~-------~~g-d~vl~~~~~~~~~~~~~~~~~~g-------- 107 (367)
..++-++|+++..-..-+.|.|++|||+|++.++.-.+ +|. .++|.-..+|++..+..++ ..|
T Consensus 89 a~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~S-v~g~~~~~~~~ 167 (449)
T COG0161 89 AIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMS-VGGPVALRHAF 167 (449)
T ss_pred HHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchhee-ccCchhhhhhh
Confidence 56888888888874323569999999999999886321 232 3488888888886432111 111
Q ss_pred -----CceEEEeCCCC--------CC----CCHHHHHHHHhccCCCCccEEEEEecCCC-cccccc----HHHHHHHHHh
Q 017726 108 -----FNVDVVESDWG--------EG----AKLDVLASKLAADTAHTIKAICIVHNETA-TGVTNN----LSKVRKLLDE 165 (367)
Q Consensus 108 -----~~~~~v~~~~~--------~~----~d~e~l~~~i~~~~~~~~~lv~~~~~~n~-tG~~~~----~~~i~~~~~~ 165 (367)
..+..++.+.. +. -..++|+++|.++.+++..++++...-.- .|.++| +++++++|++
T Consensus 168 ~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~k 247 (449)
T COG0161 168 YDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDK 247 (449)
T ss_pred ccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHH
Confidence 12223333321 11 23578889998876567888888887776 777765 7899999999
Q ss_pred cCCCcEEEEeeeeccCcee---e--ccccccceEEEecCCCcccCC-CcceeeeeCHHHHHHhccCCCCceeechHHHHH
Q 017726 166 YRHPALFLVDGVSSICAID---F--RMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVFFDWKDYIK 239 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~---~--~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (367)
|||++|.||.-..+... + .......|+++. .|.+.|. ..+|.+++++++.+.+..... .
T Consensus 248 --y~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~~--aKGLT~GY~Pl~a~l~~~~I~~~~~~~~~-~---------- 312 (449)
T COG0161 248 --YGILLIADEVATGFGRTGKMFACEHAGIVPDILCL--AKGLTGGYLPLSAVLTSDRIYEAFSDGDA-G---------- 312 (449)
T ss_pred --cCcEEEeecceeCCCcCchhhhhhhcCCCCCeeee--cccccccchhhHhHhhhHHHHHHHhcccC-C----------
Confidence 99999999986433221 1 112234688876 5777553 337889999999888775421 1
Q ss_pred HhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-c-CCccccCCCccCCCceEEEEcCCCC
Q 017726 240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQKEEWFSDTVTAVIVPSHI 317 (367)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~ 317 (367)
.|..|. .++.+..++++..+.|+.++++++ .++.++...+|.+.|++ + +.+.+..-. ..+.+..+.+..+.
T Consensus 313 ~f~HG~--TYsghPlacAaAla~L~i~e~e~l---~~~~~~~~~~l~~~L~~~l~~~p~VgdVR--~~Gli~~iElv~d~ 385 (449)
T COG0161 313 AFMHGH--TYSGNPLACAAALANLDILEEEDL---LERVAEIGAYLQAGLQAALADHPLVGDVR--GLGLIGAIELVADK 385 (449)
T ss_pred eeccCC--ccccCHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHhcccCCcEEEee--ccceEEEEEEeccc
Confidence 122243 456777777777778888888764 44677888999999987 3 444444311 23445555553332
Q ss_pred C---------HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHH
Q 017726 318 N---------SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV 357 (367)
Q Consensus 318 ~---------~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~ 357 (367)
+ ...+.+.+.++ |+.++|. +..+=+++-...+.+
T Consensus 386 ~t~~~f~~~~~~~~~~~~~e~-Gl~iRp~-----g~~i~~~PPliit~~ 428 (449)
T COG0161 386 ATKTPFEARVGARVRAAALER-GLLIRPL-----GDVIYLMPPLIITRE 428 (449)
T ss_pred ccccchhhhHHHHHHHHHHHC-CeEEeec-----CCEEEEcCCccCCHH
Confidence 2 34566666555 9999985 345666554444444
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.4e-16 Score=133.40 Aligned_cols=247 Identities=19% Similarity=0.158 Sum_probs=56.9
Q ss_pred CCCCCChHHHHHHHccCCCCCC--CCc-----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeE
Q 017726 15 PGPVHIPDQVIRAMNRNNEDYR--SPA-----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRI 87 (367)
Q Consensus 15 ~~p~~~~~~v~~a~~~~~~~~~--~~~-----~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~v 87 (367)
=|-.++++++++++.+...++. -++ ....+..+.+.++.+.|+++ .+++++...|+.+++.++. +|.+|
T Consensus 13 LGRs~l~~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~R~~~v~~ll~~ltgAea---A~VvNnnaAAv~L~l~~la-~~~Ev 88 (367)
T PF03841_consen 13 LGRSPLSEEAIEAVAEVASGYSNLEYDLETGKRGSRYAHVEELLCELTGAEA---ALVVNNNAAAVLLALNTLA-KGKEV 88 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccc-ccccc
Confidence 3667788899999888544322 111 12334567777888888765 5677888899988887754 67788
Q ss_pred EEEeCCcc----hHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCc--ccc--ccHHHH
Q 017726 88 ISFLIGQF----SLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETAT--GVT--NNLSKV 159 (367)
Q Consensus 88 l~~~~~~~----~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~t--G~~--~~~~~i 159 (367)
+++..+-. ++++.++.+..|+++++|-... +..+++++++|++ +|.+++-+|++|.. |.. .+++++
T Consensus 89 IvsRGelVeiGgsFRip~vm~~sGa~lvEVGttN--~t~~~Dye~AI~e----~Ta~ll~Vh~Sn~~i~GFt~~~~~~el 162 (367)
T PF03841_consen 89 IVSRGELVEIGGSFRIPDVMRQSGARLVEVGTTN--RTHLSDYEKAITE----NTAALLKVHTSNFRIQGFTGEVSLEEL 162 (367)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred cccccccccccccccccccccccccccccccccc--ccccccccccccc----cccccccccccccccccccccccHHHH
Confidence 88766322 2245567788899999887653 3468899999995 56899888887763 433 489999
Q ss_pred HHHHHhcCCCcEEEEeeeeccC---------cee--eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCC
Q 017726 160 RKLLDEYRHPALFLVDGVSSIC---------AID--FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV 228 (367)
Q Consensus 160 ~~~~~~~~~~~~vi~D~~~~~~---------~~~--~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~ 228 (367)
.+++++ |++++++|..++.. ..+ -.....|+|++++|+.|-++||. .|+++++++++++++....
T Consensus 163 ~~la~~--~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQ-aGiI~Gkk~lI~~lk~~pl- 238 (367)
T PF03841_consen 163 AELAKE--HGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQ-AGIIVGKKELIEKLKKHPL- 238 (367)
T ss_dssp HHHHHH--HT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S--EEEEEEHHHHHHHHHHHH-
T ss_pred HHHHhh--cCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCC-eEEEEeCHHHHHHHhhCCC-
Confidence 999999 99999999876321 111 12234589999999999998877 5999999999998874210
Q ss_pred ceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC-----------hHHHHHHHHHHHHHHHHHHHHc
Q 017726 229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-----------LENVIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g-----------~~~~~~~~~~~~~~l~~~L~~~ 292 (367)
++ ..-..-..++++.++++.+.+.. +.+..+.+++.++.+.+.|+..
T Consensus 239 ---------------~R--alrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~~rA~~l~~~l~~~ 296 (367)
T PF03841_consen 239 ---------------GR--ALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELRARAERLAAQLKAA 296 (367)
T ss_dssp ---------------TT--T-B--HHHHHHHHHHHHH--------------------------------------
T ss_pred ---------------cc--eEeeCHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccc
Confidence 11 11244456688888888766311 2223344455566666666553
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-12 Score=119.48 Aligned_cols=290 Identities=16% Similarity=0.119 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC------C-C-CCeEEEEeCCcchHHHHHHHHHhC------
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL------S-P-GDRIISFLIGQFSLLWIDQQQRLN------ 107 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~------~-~-gd~vl~~~~~~~~~~~~~~~~~~g------ 107 (367)
+...++.++|.+..... .+.+.|++||++|++.++.... . + ..+|+....+|++..+... ...+
T Consensus 95 ~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~-s~~~~~~~~~ 172 (466)
T PRK07036 95 APAAELAAKLAELAPGD-LNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTA-SLTGKAADRT 172 (466)
T ss_pred HHHHHHHHHHHHhCCCC-cCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhh-cccCCCcccc
Confidence 44567777777775332 2469999999999999886421 1 2 3578888888887542111 1111
Q ss_pred ------CceEEEeCCCC----CCCC--------HHHHHHHHhccCCCCccEEEEEecCCCcccccc----HHHHHHHHHh
Q 017726 108 ------FNVDVVESDWG----EGAK--------LDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDE 165 (367)
Q Consensus 108 ------~~~~~v~~~~~----~~~d--------~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~~i~~~~~~ 165 (367)
..+..++.+.. ...+ .+.+++.+.+...+++.+|++.......|.+.| +++++++|++
T Consensus 173 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~ 252 (466)
T PRK07036 173 EFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRR 252 (466)
T ss_pred cccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHH
Confidence 11233332211 0111 244556665322256789999988888898876 8899999999
Q ss_pred cCCCcEEEEeeeeccCcee---ec---cccccceEEEecCCCcccCC-CcceeeeeCHHHHHHhccCCCCceeechHHHH
Q 017726 166 YRHPALFLVDGVSSICAID---FR---MDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVFFDWKDYI 238 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~---~~---~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (367)
||+++|+||+++..... +- ......|+++. +|.+++. ..+|.+++++++.+.+.........
T Consensus 253 --~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt~--gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~------- 321 (466)
T PRK07036 253 --YDILYISDEVVTGFGRLGHFFASEAVFGIQPDIITF--AKGLTSGYQPLGAVIISERLLDVISGPNAKGNV------- 321 (466)
T ss_pred --cCCEEEEeechhCCCcCchhhhhhhhcCCCCCEEEE--ccccccCccccEEEEEcHHHHHHHhcccCcCcc-------
Confidence 99999999998533221 11 12235788766 7888765 2479999999998776531110000
Q ss_pred HHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCC
Q 017726 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHI 317 (367)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 317 (367)
+..+. .++.+...+++..++++.+++.+ +.++..++.++|++.|+++ ..+++..-. -.+.++.+.+.+..
T Consensus 322 --~~~~~--T~~gnpl~~aaa~a~Le~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~v~~vr--G~Gl~~~ve~~~~~ 392 (466)
T PRK07036 322 --FTHGF--TYSGHPVACAAALKNIEIMEREG---LCEHVREVGPYFEERLASLRELPLVGDVR--GDHLMACVECVADK 392 (466)
T ss_pred --cccCC--CCCCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHhccCCCEEEEE--eeceEEEEEEccCc
Confidence 11121 33466767788888888887764 4556777888888888765 333222111 13345555552110
Q ss_pred --------C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 318 --------N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 318 --------~---~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
+ ...+.+.+.++ ||.+.+. ++.+|+++....+++|+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~-Gvl~~~~-----~~~~~l~Ppl~it~~~i 439 (466)
T PRK07036 393 GSKALLPEDIAIGQRIDRHCQER-GLLVRPL-----EHLCVLSPPLIITRAQI 439 (466)
T ss_pred cccCCCCchhHHHHHHHHHHHHC-CcEEeec-----CCEEEEeCCCcCCHHHH
Confidence 0 23566677654 9988642 24689987665565544
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-11 Score=115.67 Aligned_cols=314 Identities=12% Similarity=0.064 Sum_probs=182.5
Q ss_pred hHHHHHHHccCCCC--CC--CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC--------CCCCeEE
Q 017726 21 PDQVIRAMNRNNED--YR--SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--------SPGDRII 88 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~--~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~--------~~gd~vl 88 (367)
.+++.+++.++... +. .....+...++.++|.+.+.... +.+.|++||++|++.++.... ....+|+
T Consensus 49 hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii 127 (447)
T PRK06917 49 VKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSPGDL-NWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKIL 127 (447)
T ss_pred CHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCCC-CEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 45555555554332 11 11123455678888887764322 368999999999999887431 1235788
Q ss_pred EEeCCcchHHHHHHHHHhCC------------ceEEEeCCCCCC------------CCHHHHHHHHhccCCCCccEEEEE
Q 017726 89 SFLIGQFSLLWIDQQQRLNF------------NVDVVESDWGEG------------AKLDVLASKLAADTAHTIKAICIV 144 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~------------~d~e~l~~~i~~~~~~~~~lv~~~ 144 (367)
....+|++....... ..+. .+..++.+.... -+++.+++.++++..+++.+|++.
T Consensus 128 ~~~~~yHG~t~~als-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~E 206 (447)
T PRK06917 128 SRWMSYHGITMGALS-MSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIGAEHIAAFIAE 206 (447)
T ss_pred EECCCcCCccHHHHH-hcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEe
Confidence 888888885421111 1111 112222211110 024567777765432357888888
Q ss_pred ecCCC-cccccc----HHHHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCC-cceeee
Q 017726 145 HNETA-TGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPT-GMGIVC 213 (367)
Q Consensus 145 ~~~n~-tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~-g~g~~~ 213 (367)
..... -|.+.| +++++++|++ +|+++|+||++...... ........|++++ +|.+++.. .+|.+.
T Consensus 207 Pi~g~~gG~~~p~~~fl~~lr~lc~~--~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~~--gK~l~~G~~Pi~a~~ 282 (447)
T PRK06917 207 PIIGAAGAAVVPPKGYYKVIKEICDH--YDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMTL--GKGLGAGYTPIAATV 282 (447)
T ss_pred ccccCcCceecCCHHHHHHHHHHHHH--cCCEEEEechhhCcCcccchhhHHhcCCCCCEEEe--eehhccCCcceEEEE
Confidence 76653 456654 7789999999 99999999997632211 1122234788766 78887653 479999
Q ss_pred eCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-
Q 017726 214 ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW- 292 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~- 292 (367)
+++++.+.+..... . +..+. .++.+...+++..++++.+.+++ +.++..++.++|.+.|+++
T Consensus 283 ~~~~i~~~~~~~~~-~-----------~~~~~--T~~gnpl~~aaa~a~l~~l~~~~---l~~~~~~~g~~l~~~L~~l~ 345 (447)
T PRK06917 283 VSDRVMEPILRGSR-S-----------IMSGH--TLSANPLSAATALAVLEYMEKHN---LPEKAAEKGEYLIKGLQKVQ 345 (447)
T ss_pred EcHHHHHHHhccCc-c-----------ccccc--CCCCCHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHH
Confidence 99998776643110 0 00111 23456666788888888887764 4557777888888888775
Q ss_pred -CCccccCCCccCCCceEEEEcC-CC-----C-----CHHHHHHHHHhhCCeEEccCCC---CCCCcEEEEeecCCCCHH
Q 017726 293 -GLKNCTQKEEWFSDTVTAVIVP-SH-----I-----NSSEIVRRAWQRYNLSLGLGLN---KVAGKVFRIGHLGHLNEV 357 (367)
Q Consensus 293 -g~~~~~~~~~~~~~~~~~~~~~-~~-----~-----~~~~l~~~L~~~~gv~v~~g~~---~~~~~~iRi~~~~~~~~~ 357 (367)
...++..-. -.+.++.+.+- +. . -...+++.+.+ +||.+.+... ...++.+|+++.-..+++
T Consensus 346 ~~~~~i~~vr--G~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~ 422 (447)
T PRK06917 346 QQSTIIGDVR--GKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAK-NGLLLYPAVAGQDGKEGDAVIIAPPMTITYS 422 (447)
T ss_pred hcCCCEEEEe--ecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHh-CCcEEEecccccCCCCCCEEEEECCCcCCHH
Confidence 233322111 13334444441 11 0 13456677765 4999976421 123568999877555555
Q ss_pred HHH
Q 017726 358 MFN 360 (367)
Q Consensus 358 ~~~ 360 (367)
|+.
T Consensus 423 eid 425 (447)
T PRK06917 423 ELD 425 (447)
T ss_pred HHH
Confidence 443
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-12 Score=111.89 Aligned_cols=293 Identities=15% Similarity=0.085 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHc---cCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN---TLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVES 115 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~---~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~ 115 (367)
.+..-++...++++.|.+=.. .-+-.++|.+=+.+..+ -..+..+++++..-|+... ....++..|+++..++.
T Consensus 119 LqaLfefQtlv~dLTGm~VAN-ASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~ 197 (450)
T COG0403 119 LEALFEFQTLVADLTGLDVAN-ASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDA 197 (450)
T ss_pred HHHHHHHHHHHHHHhCCCccc-chhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEecc
Confidence 444667899999999998433 23336666544444433 2334678999888787765 44567778888888876
Q ss_pred CCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcc-ccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceE
Q 017726 116 DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATG-VTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDV 194 (367)
Q Consensus 116 ~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG-~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~ 194 (367)
+ |.++++++ ++ ..+..+++.+|+ ..| ...|+.++.+.+|. +|+++++=.---...+--+..++|+||
T Consensus 198 ~-----d~~~l~~~-~~---~~~~gv~vQyP~-~~G~~~~d~~~l~~~~h~--~~al~~v~aDplaL~LL~pPGe~GADI 265 (450)
T COG0403 198 D-----DLDDLESA-DD---GDVFGVLVQYPN-TFGIVEEDLRALIEAAHS--AGALVIVAADPLALGLLKPPGEFGADI 265 (450)
T ss_pred c-----hhhhhhhc-cc---cCeEEEEEecCC-CCCccchhHHHHHHHHhh--cCCEEEEEechhHhhccCCccccCCce
Confidence 6 78888888 43 246788888876 666 66679999999999 888877543322222222455679999
Q ss_pred EEecCCCcc----cCCCcceeeeeCHHHHHHhccCCCC---------ceeechHH--HHHHhhcCCccCCCCcHHHHHHH
Q 017726 195 ALTGSQKAL----SLPTGMGIVCASPKALEASKTAKSV---------RVFFDWKD--YIKFYNLGTFWPYTPSIQLLYGL 259 (367)
Q Consensus 195 ~~~s~~K~~----~g~~g~g~~~~~~~~~~~~~~~~~~---------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~al 259 (367)
++++++..- .|.+.+|++.+++++.++++....+ .+.+.++. +-.|-+..| ++......+.|+
T Consensus 266 vvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKAT--SNICTnQaLlA~ 343 (450)
T COG0403 266 VVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKAT--SNICTNQALLAL 343 (450)
T ss_pred EEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccc--hhhhHHHHHHHH
Confidence 999988741 1223369999999998887765431 11122332 223334443 232333334444
Q ss_pred HHHHH--HHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEc
Q 017726 260 RAALD--LIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLG 335 (367)
Q Consensus 260 ~~al~--~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~ 335 (367)
.+++. ++...|++++.++..+++.+++++|++. |+++... .++.. +.++++. .....+.++.. ..|+-++
T Consensus 344 ~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~--~fFdt--~~v~~~~-~~~~~l~~~~~-~~G~~L~ 417 (450)
T COG0403 344 AASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFD--HFFDT--FTVRVPE-EVAEALLAAAI-AGGINLR 417 (450)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccc--cceee--EEEecch-hHHHHHHHHHH-hcCCcee
Confidence 44443 4567789999999999999999999975 5777764 22232 4566642 22344455443 3366555
Q ss_pred cCCCCCCCcEEEEeecCCCCHHH
Q 017726 336 LGLNKVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 336 ~g~~~~~~~~iRi~~~~~~~~~~ 358 (367)
.-. ...+-++..-..+.++
T Consensus 418 ~~~----~~~~~ia~tEt~t~~~ 436 (450)
T COG0403 418 RVD----ADTVLIALTETTTKED 436 (450)
T ss_pred eec----CCceEEEeecccCHHH
Confidence 322 2245555544444443
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.3e-12 Score=116.42 Aligned_cols=294 Identities=16% Similarity=0.126 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC-------CC-CCeEEEEeCCcchHHHHHHHHH--------
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-------SP-GDRIISFLIGQFSLLWIDQQQR-------- 105 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~-------~~-gd~vl~~~~~~~~~~~~~~~~~-------- 105 (367)
+...++.++|.++..... +.+.|++||++|++.++.... .+ ..+|+....+|++.........
T Consensus 73 ~~~~~lae~L~~~~p~~~-~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~ 151 (443)
T PRK07483 73 EPAEALADRLVAAAPAGL-EHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREP 151 (443)
T ss_pred HHHHHHHHHHHHhCCCCC-CEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccc
Confidence 445677777777664222 369999999999999886421 12 3468888888888632111110
Q ss_pred hC---CceEEEeCCCCCC-C------------CHHHHHHHHhccCCCCccEEEEEecCC-Ccccccc----HHHHHHHHH
Q 017726 106 LN---FNVDVVESDWGEG-A------------KLDVLASKLAADTAHTIKAICIVHNET-ATGVTNN----LSKVRKLLD 164 (367)
Q Consensus 106 ~g---~~~~~v~~~~~~~-~------------d~e~l~~~i~~~~~~~~~lv~~~~~~n-~tG~~~~----~~~i~~~~~ 164 (367)
.+ ..+..++...... . .++++++++.+...+++.+|++..... ..|.+.+ ++.++++|+
T Consensus 152 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~ 231 (443)
T PRK07483 152 FAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCD 231 (443)
T ss_pred cCCCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHH
Confidence 00 1122233221111 0 025666666532214677888887764 3476665 788999999
Q ss_pred hcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCC-cceeeeeCHHHHHHhccCCCCceeechHHHH
Q 017726 165 EYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPT-GMGIVCASPKALEASKTAKSVRVFFDWKDYI 238 (367)
Q Consensus 165 ~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (367)
+ +|+++|.||++...... ........|+++. .|.++|.. .+|.+++++++.+.+.... .
T Consensus 232 ~--~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gK~l~gG~~Pi~av~~~~~i~~~~~~~~--~--------- 296 (443)
T PRK07483 232 R--YGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVTI--AKGLGAGYQPIGAVLASDRIYDAIADGS--G--------- 296 (443)
T ss_pred H--hCCEEEEecceeCcccCcHHHHHhhcCCCCCeeee--hhhhccCccccEEEEEcHHHHHHHhcCC--C---------
Confidence 9 99999999997643221 1122335788877 68887663 5799999999877665311 0
Q ss_pred HHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCCceEEEEcCCC
Q 017726 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSH 316 (367)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~ 316 (367)
.+..+. .+..+...+++..++++.+++++ ..++..+..++|++.|+++ ..+.+..-. -.+.++.+.+.+.
T Consensus 297 -~~~h~~--T~~gnpl~~aaa~a~l~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~i~~vR--G~Glm~gie~~~~ 368 (443)
T PRK07483 297 -FFQHGH--TYLGHATACAAALAVQRVIAEDG---LLANVRARGEQLRARLRERLGQHPHVGDIR--GRGLFVGVELVAD 368 (443)
T ss_pred -ccccCC--CCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHhcCCCeeeEe--ecccEEEEEEeec
Confidence 001121 33466667788888888888765 4456777778888888763 333332111 1233444444211
Q ss_pred C------C-----HHHHHHHHHhhCCeEEccCCC---CCCCcEEEEeecCCCCHHHHH
Q 017726 317 I------N-----SSEIVRRAWQRYNLSLGLGLN---KVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 317 ~------~-----~~~l~~~L~~~~gv~v~~g~~---~~~~~~iRi~~~~~~~~~~~~ 360 (367)
. + ...+.+.+.++ |+.+.+.-. ...++.+|+.+.-..++++++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid 425 (443)
T PRK07483 369 RATKAPFDPALKLHARIKREAMAR-GLMVYPMGGTIDGVRGDHVLLAPPFIITAAQID 425 (443)
T ss_pred ccccCCCCchhhHHHHHHHHHHHC-CcEEEecCccccCCCCCEEEEECCCCCCHHHHH
Confidence 0 1 24577777654 999875311 112468999887766665544
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-12 Score=130.93 Aligned_cols=308 Identities=15% Similarity=0.058 Sum_probs=183.7
Q ss_pred hHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCcch
Q 017726 21 PDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQFS 96 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~~~ 96 (367)
.+++.+++.++... +.+....+...++.+++++++...- +.+.|++||++|+..+++.. .....+|+....+|++
T Consensus 601 hp~v~~Ai~~q~~~l~~~~~~~~~~~~elae~L~~~~p~~~-~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG 679 (972)
T PRK06149 601 HPRLAAAAARQWSLLNTNSRFHYAAVAEFSERLAALAPDGL-DTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHG 679 (972)
T ss_pred CHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhCCCCc-CEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 45555555554321 1111123456688888888873222 35899999999999988731 2334578888888887
Q ss_pred HHHHHHHH--H----hCC------ceEEEeCCCCCC--C---C-----HHHHHHHHhc---cCCCCccEEEEEecCCCcc
Q 017726 97 LLWIDQQQ--R----LNF------NVDVVESDWGEG--A---K-----LDVLASKLAA---DTAHTIKAICIVHNETATG 151 (367)
Q Consensus 97 ~~~~~~~~--~----~g~------~~~~v~~~~~~~--~---d-----~e~l~~~i~~---~~~~~~~lv~~~~~~n~tG 151 (367)
.......- . .+. .+..++.+...+ + + .+++++.+++ .. .++.+|++.......|
T Consensus 680 ~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~iAavI~Epv~g~gG 758 (972)
T PRK06149 680 WTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASG-RGLAGFICEPVYGNAG 758 (972)
T ss_pred cChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcC-CceEEEEEcccccCCC
Confidence 43111100 0 000 122232221111 1 1 2444444432 22 4678888888888889
Q ss_pred cccc----HHHHHHHHHhcCCCcEEEEeeeec-cCcee-----eccccccceEEEecCCCcccCCCcceeeeeCHHHHHH
Q 017726 152 VTNN----LSKVRKLLDEYRHPALFLVDGVSS-ICAID-----FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEA 221 (367)
Q Consensus 152 ~~~~----~~~i~~~~~~~~~~~~vi~D~~~~-~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~ 221 (367)
.+.+ +++++++|++ +|+++|+||++. +|..- +.......|++++ +|.+++...+|.+++++++.+.
T Consensus 759 ~i~~p~~yL~~l~~lc~~--~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~--gK~lg~G~Pl~av~~~~~i~~~ 834 (972)
T PRK06149 759 GIALPPGYLQQVYAAVRA--RGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITM--AKGMGNGHPLGAVITRREIAEA 834 (972)
T ss_pred cccCCHHHHHHHHHHHHH--cCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEe--cccccCCeeeEEEEEcHHHHhh
Confidence 8887 8999999999 999999999984 43221 1112335788855 7888765557999999998876
Q ss_pred hccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccC
Q 017726 222 SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQ 299 (367)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~ 299 (367)
+... ..+. + .+..+...+++..++|+.+++++ +.++..+..++|++.|+++ ...++..
T Consensus 835 ~~~~---~~~~-----------s---T~~gnP~~~aaala~L~~i~~e~---l~~~~~~~G~~l~~~L~~l~~~~~~i~~ 894 (972)
T PRK06149 835 LEAE---GYFF-----------S---STGGSPVSCRIGMAVLDVLREEK---LQENARRVGDHLKARLEALADRHPLIGA 894 (972)
T ss_pred hccC---Cccc-----------C---CCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 6531 0011 1 22456666677777888887764 4556777888888888875 2343332
Q ss_pred CCccCCCceEEEEcCCC-----CC---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 300 KEEWFSDTVTAVIVPSH-----IN---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 300 ~~~~~~~~~~~~~~~~~-----~~---~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
-. -.+.++.+.+.++ .+ ...+++.|.++ ||.+.+. ...++.+||.+.-..+++++
T Consensus 895 vr--G~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~-Gvl~~~~--g~~~~vl~~~Ppl~it~~~i 957 (972)
T PRK06149 895 VH--GMGLYLGVELVRDRQTLEPATEETAAICDRLLEL-GVIMQPT--GDHLNILKIKPPLCLDRESA 957 (972)
T ss_pred Ee--ecceEEEEEEecCcccCCCChHHHHHHHHHHHhC-CeEEeec--CCCCCEEEEECCCcCCHHHH
Confidence 11 1233444544111 11 34677888765 9998763 12246799987655555443
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.8e-12 Score=116.20 Aligned_cols=292 Identities=15% Similarity=0.106 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC-------CC-CCeEEEEeCCcchHHHHHHHHHhC------
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-------SP-GDRIISFLIGQFSLLWIDQQQRLN------ 107 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~-------~~-gd~vl~~~~~~~~~~~~~~~~~~g------ 107 (367)
+...++.++|.++++-...+.+.|++||++|++.++.... .+ ..+|+....+|++....... ..+
T Consensus 86 ~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s-~~~~~~~~~ 164 (449)
T PRK07481 86 PRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGAS-VNGNTVFRR 164 (449)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhc-cCCCccccc
Confidence 5556788888887742223469999999999999886421 12 35788888888885321111 001
Q ss_pred ------CceEEEeCCCC----CC-CCHHH--------HHHHHhccCCCCccEEEEEecCCCcccccc----HHHHHHHHH
Q 017726 108 ------FNVDVVESDWG----EG-AKLDV--------LASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLD 164 (367)
Q Consensus 108 ------~~~~~v~~~~~----~~-~d~e~--------l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~~i~~~~~ 164 (367)
..+..++.+.. +. .|++. +++.+.....+++.+|++.......|.+.+ +++++++|+
T Consensus 165 ~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~ 244 (449)
T PRK07481 165 NYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCD 244 (449)
T ss_pred ccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHH
Confidence 11233332211 00 13333 344443211146789999988888888765 788999999
Q ss_pred hcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCC-CcceeeeeCHHHHHHhccCCCCceeechHHHH
Q 017726 165 EYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVFFDWKDYI 238 (367)
Q Consensus 165 ~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (367)
+ +|+++|.||++...... +.......|+++. .|.+++. ..+|.+++++++.+.+........
T Consensus 245 ~--~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~-------- 312 (449)
T PRK07481 245 R--HGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMCL--AKGITSGYVPLGATMVNARIADAFEANADFGG-------- 312 (449)
T ss_pred H--cCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEEE--eecccCCCcCceEEEEcHHHHHHHhccCcccc--------
Confidence 9 99999999997643221 1222335788877 6888764 247999999998877653210000
Q ss_pred HHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCCceEEEEcCCC
Q 017726 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSH 316 (367)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~ 316 (367)
.+..+. .+..+...+++..++++.+.+++ ..++..+..++|.+.|+++ .+.++..-. -.+.++.+.+.++
T Consensus 313 -~~~h~~--T~~gnpl~~aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr--G~Glm~gi~l~~~ 384 (449)
T PRK07481 313 -AIMHGY--TYSGHPVACAAALATLDIVVRED---LPANAAKRGAYLLEGLQPLKERFELVGDVR--GKGLMLALDLVAD 384 (449)
T ss_pred -ccccCC--CCCCCHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHhhcCCCeEEEe--ecceEEEEEeccc
Confidence 011121 33456666777777888887764 4456777788888888775 244333211 1233455554211
Q ss_pred ---C---C-----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 317 ---I---N-----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 317 ---~---~-----~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
. + ...+.+.+.+ .||.+.+. +..+|+++....+++|++
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~-----g~~i~l~Ppl~it~~eid 433 (449)
T PRK07481 385 KATREPIDPSKGYANAVADVARE-NGVLVRPS-----GTKIILSPPLVIQREDVD 433 (449)
T ss_pred ccccCCCCchhHHHHHHHHHHHh-CCeEEEec-----CCEEEEECCCCCCHHHHH
Confidence 0 1 2356666755 49988653 235899876655655443
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-11 Score=114.57 Aligned_cols=305 Identities=14% Similarity=0.087 Sum_probs=181.1
Q ss_pred ChHHHHHHHccCCCC--CC-CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCc
Q 017726 20 IPDQVIRAMNRNNED--YR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQ 94 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~ 94 (367)
-.+.+.+++.++... +. .....+...++.+++++++.... +.+.|++||++|+..++... .....+|+....+|
T Consensus 88 ~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~y 166 (459)
T PRK06082 88 GHPHVIEKVKEQMAKLPFSPRRFTNETAIECAEKLTEIAGGEL-NRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSF 166 (459)
T ss_pred CCHHHHHHHHHHHHhCCCccCccCCHHHHHHHHHHHHhCCCCC-CEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 345566666664332 11 11224566788888888875322 36999999999999988642 23346788888888
Q ss_pred chHHHHHHHHHhCC------------ceEEEeCCCCCC-----C------CHHHHHHHHhccCCCCccEEEEEecCCCcc
Q 017726 95 FSLLWIDQQQRLNF------------NVDVVESDWGEG-----A------KLDVLASKLAADTAHTIKAICIVHNETATG 151 (367)
Q Consensus 95 ~~~~~~~~~~~~g~------------~~~~v~~~~~~~-----~------d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG 151 (367)
++...... ...|. .+..++...... . +++.+++.+++. .++.+|++....+..+
T Consensus 167 HG~t~~a~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~vAavIvEPv~g~g~ 243 (459)
T PRK06082 167 HGASLDAI-SVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKE--GGIGAFIAEAVRNTDV 243 (459)
T ss_pred cCccHHHH-hhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcC--CCEEEEEECCccCCCC
Confidence 87542111 11111 122333221110 1 135577777642 3567888887766533
Q ss_pred cccc---HHHHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCC-cceeeeeCHHHHHHh
Q 017726 152 VTNN---LSKVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPT-GMGIVCASPKALEAS 222 (367)
Q Consensus 152 ~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~-g~g~~~~~~~~~~~~ 222 (367)
.+.| +++++++|++ +|+++|+||+++..... ........|+++ .+|.++|.. .+|.+++++++....
T Consensus 244 ~~~~~~yl~~lr~lc~~--~g~llI~DEV~tG~GRtG~~fa~e~~gv~PDiv~--~gKgl~gG~~P~~av~~~~~i~~~~ 319 (459)
T PRK06082 244 QVPSKAYWKRVREICDK--HNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILC--IGKGLGGGLVPIAAMITKDKYNTAA 319 (459)
T ss_pred cCCCHHHHHHHHHHHHH--cCCEEEEechhhCCCccchhhHhHhhCCCCCEEE--ecccccCCCCcceEEEEcHHHHhhc
Confidence 3445 7899999999 99999999998643221 122233578887 589997652 478888988865332
Q ss_pred ccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCC
Q 017726 223 KTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQK 300 (367)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~ 300 (367)
... + .. +.+..+...+++..++++.+.+++ ..++..++.++|.+.|+++ .+.++..-
T Consensus 320 ~~~---------------~--~~-~T~~gnpl~~aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~i~~v 378 (459)
T PRK06082 320 QIS---------------L--GH-YTHEKSPLGCAAALATIEVIEQEG---LLEKVKADSQFMRERLLEMKAKYPLIGDV 378 (459)
T ss_pred cCC---------------C--CC-CCCCcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHhhCCCeeee
Confidence 210 0 00 133456666777777888887764 4567788888888888775 24333321
Q ss_pred CccCCCceEEEEcCCCC-----C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 301 EEWFSDTVTAVIVPSHI-----N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 301 ~~~~~~~~~~~~~~~~~-----~---~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
. -.+.++.+.+.+.. + ...+.+.+.+ .||.+.+. .++.+|+++....++++++
T Consensus 379 r--G~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~----~~~~i~~~Ppl~it~~eid 439 (459)
T PRK06082 379 R--GIGLLWGVELVTDRHTKERAYDEAEAVLYRCLN-NGLSFKVS----QGNVIQLSPPLIITREELT 439 (459)
T ss_pred e--eccceeEEEEccCccccCccHHHHHHHHHHHHh-CCCEEEec----CCCEEEEeCCCccCHHHHH
Confidence 1 12334555552111 1 2356666654 59988652 2467999976666655443
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-12 Score=115.54 Aligned_cols=283 Identities=13% Similarity=0.122 Sum_probs=172.4
Q ss_pred hHHHHHHHccCCCC--CCC-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCC-CeEEEEeCCcc
Q 017726 21 PDQVIRAMNRNNED--YRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPG-DRIISFLIGQF 95 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~g-d~vl~~~~~~~ 95 (367)
++++.+++.++... +.+ ....+...++.++++++.+.+ .+.+++||++|++.++... ...| ++|++...+|+
T Consensus 42 ~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~l~~~~~~~---~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syH 118 (364)
T PRK04013 42 HPEWVEEMSEQLEKLVVAGPMFEHEEKEEMLEELSKWVNYE---YVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFH 118 (364)
T ss_pred CHHHHHHHHHHHHhcCCccCCcCCHHHHHHHHHHHhhcCCC---EEEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 34556666654332 111 112355678888888887543 4899999999999988753 2234 78999888888
Q ss_pred hHHHHHHHH------HhCCc-----eEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc-c---HHHHH
Q 017726 96 SLLWIDQQQ------RLNFN-----VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN-N---LSKVR 160 (367)
Q Consensus 96 ~~~~~~~~~------~~g~~-----~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~-~---~~~i~ 160 (367)
+........ ..+.. +..++. .|++.+++.+. +++++|++.+.....|... | +++++
T Consensus 119 G~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~----~~~aAvivEpi~g~gG~~~~~~~yl~~lr 189 (364)
T PRK04013 119 GRTMGALSATWKPKYREDFEPLVPGFKHIPF-----NDVEAAKEAIT----KETAAVIFEPIQGEGGIVPAKEEFVKTLR 189 (364)
T ss_pred cCchhhccCCCCcccccCCCCCCCCcEEecC-----CCHHHHHHHhc----CCcEEEEEcCCcCCCCCcCCCHHHHHHHH
Confidence 753211110 01111 222222 26788888886 4678999998887777665 4 88999
Q ss_pred HHHHhcCCCcEEEEeeeeccC---ce-eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHH
Q 017726 161 KLLDEYRHPALFLVDGVSSIC---AI-DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 161 ~~~~~~~~~~~vi~D~~~~~~---~~-~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (367)
++|++ +|+++|.|++++.. .+ .........|+++. .|.+++...+|.++.+.++ ....
T Consensus 190 ~lc~~--~gillI~DEv~tG~RtG~~~a~~~~gv~PDiv~~--gK~lggG~P~~a~~~~~~~----~~~~---------- 251 (364)
T PRK04013 190 DLTED--VGALLIADEVQSGLRTGKFLAIEHYKVEPDIVTM--GKGIGNGVPVSLTLTNFDV----ERGK---------- 251 (364)
T ss_pred HHHHH--cCCEEEEechhhcCCCCchhHHHhcCCCCCEEEe--cccccCCceeEEEEecccc----cCCC----------
Confidence 99999 99999999997632 11 11122234787777 7888765446777777664 1100
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCC
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH 316 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 316 (367)
.+ ..+..+...+++..++++.++++++-+..++ . +. .+.. +.+..-. -.+.++.+.+.+
T Consensus 252 ------~~--~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~---~---l~-~l~~---~~v~~vR--G~Gl~~gve~~~- 310 (364)
T PRK04013 252 ------HG--STFGGNPLACKAVAVTLRILRRERLVEKAGE---K---FI-EIKG---ERVVTTR--GRGLMIGIVLKK- 310 (364)
T ss_pred ------cC--CCCCcCHHHHHHHHHHHHHHHhccHHHHHHH---H---HH-Hhcc---Ccceeee--eCcEEEEEEeCC-
Confidence 01 1345677777888888999988874332222 1 21 2211 1212111 133455666621
Q ss_pred CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 317 INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 317 ~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
+...+.+.+.+ +|+.+.+. ..+.+|+.+.-..+++++.
T Consensus 311 -~~~~i~~~~~~-~Gll~~~~----g~~vlr~~Ppl~it~~~i~ 348 (364)
T PRK04013 311 -PVGKYVEELQN-RGYLVHTA----GQRVIRLLPPLIISKDTME 348 (364)
T ss_pred -cHHHHHHHHHh-CCcEEeeC----CCCEEEEeCCcccCHHHHH
Confidence 35678888865 49988642 2367999987777765543
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.6e-12 Score=117.52 Aligned_cols=310 Identities=14% Similarity=0.089 Sum_probs=178.8
Q ss_pred hHHHHHHHccCCCC--C--CC-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC------C-C-CCeE
Q 017726 21 PDQVIRAMNRNNED--Y--RS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL------S-P-GDRI 87 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~--~~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~------~-~-gd~v 87 (367)
.+++.+++.++... + .. ....+...++.++|.+.+... .+.+.|++||++|++.++.... . + ..+|
T Consensus 68 ~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~i 146 (456)
T PRK07480 68 RKELADAAARQMRELPYYNTFFKTTHPPAIELAAKLAEVAPPG-FNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVI 146 (456)
T ss_pred CHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 45566666554332 1 11 112355667888888877432 2369999999999999886421 1 2 3467
Q ss_pred EEEeCCcchHHHHHHH--------HHhC---CceEEEeCCCCC----CCC--------HHHHHHHHhccCCCCccEEEEE
Q 017726 88 ISFLIGQFSLLWIDQQ--------QRLN---FNVDVVESDWGE----GAK--------LDVLASKLAADTAHTIKAICIV 144 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~--------~~~g---~~~~~v~~~~~~----~~d--------~e~l~~~i~~~~~~~~~lv~~~ 144 (367)
+....+|++....... +..+ ..+..++.+... ..+ ++.+++.+.+...+++.+|++.
T Consensus 147 i~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~E 226 (456)
T PRK07480 147 ISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGE 226 (456)
T ss_pred EEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 8777778775321111 0001 011222221100 001 2566655543322467889999
Q ss_pred ecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCC-cceeeee
Q 017726 145 HNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPT-GMGIVCA 214 (367)
Q Consensus 145 ~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~-g~g~~~~ 214 (367)
......|.+.+ +++++++|++ +|+++|+||++..... .+.......|++++ +|.++|.. .+|.+++
T Consensus 227 Piqg~gG~~~~~~~yl~~lr~lc~~--~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gK~l~gG~~Pi~av~~ 302 (456)
T PRK07480 227 PIQGAGGVIIPPATYWPEIQRICRK--YDILLVADEVICGFGRTGEWFGSQHFGIKPDLMTI--AKGLTSGYIPMGAVGV 302 (456)
T ss_pred cccCCCCCccCCHHHHHHHHHHHHH--cCCEEEEechhhCCCcCcchhhhhhcCCCCCeeee--ehhhccCCccceEEEE
Confidence 88887888776 8889999999 9999999999853221 11222334687766 78887642 3788889
Q ss_pred CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHc-
Q 017726 215 SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERH-RRLGKATRLAVEAW- 292 (367)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~-~~~~~~l~~~L~~~- 292 (367)
++++.+.+.... .. +..+. .++.+...+++..++|+.+.++++ .++. .+..++|.+.|+++
T Consensus 303 ~~~i~~~~~~~~-~~-----------~~~~~--T~~gnpl~~Aaa~a~L~~l~~~~l---~~~~~~~~g~~l~~~l~~l~ 365 (456)
T PRK07480 303 GDRVAEVLIEEG-GE-----------FNHGF--TYSGHPVAAAVALANLRILRDEGI---VERVRDDTGPYLQKRLRELA 365 (456)
T ss_pred cHHHHHHHhcCC-CC-----------cccCC--CCCcCHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHHhh
Confidence 999877663100 00 01122 345677778888889998887753 3355 35667777777664
Q ss_pred CCccccCCCccCCCceEEEEcCCC-C------C----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 293 GLKNCTQKEEWFSDTVTAVIVPSH-I------N----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 293 g~~~~~~~~~~~~~~~~~~~~~~~-~------~----~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
...++..-. -.+.++.+.+-+. . + ...+.+.+.+ .||.+.+. ++.+|+.+....+++|++
T Consensus 366 ~~~~i~~vr--G~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~-----~~~l~~~Ppl~it~~eid 436 (456)
T PRK07480 366 DHPLVGEVR--GVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFA-NGLIMRAV-----GDRMIISPPLVITHAEID 436 (456)
T ss_pred cCCCeeeEE--eecceEEEEEeccccccccCcchhhHHHHHHHHHHH-CCcEEeec-----CCEEEEECCCCCCHHHHH
Confidence 332222111 1233444444111 0 1 1345566655 49988641 357999877766655443
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.4e-12 Score=117.76 Aligned_cols=291 Identities=14% Similarity=0.150 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC----------C----CCCeEEEEeCCcchHHHHHHHHHhC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL----------S----PGDRIISFLIGQFSLLWIDQQQRLN 107 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~----------~----~gd~vl~~~~~~~~~~~~~~~~~~g 107 (367)
....++-++++++..-+..+.+.|++||++|++.++.... . .+.+|+....+|++......+. .|
T Consensus 85 ~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~-~~ 163 (431)
T TIGR03251 85 VAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSL-TN 163 (431)
T ss_pred HHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhc-cC
Confidence 3445566666666422223468999999999999886421 0 1367998888888864211111 11
Q ss_pred Cc-eE----------EEeCC-------CCC-C-------CCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----HH
Q 017726 108 FN-VD----------VVESD-------WGE-G-------AKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LS 157 (367)
Q Consensus 108 ~~-~~----------~v~~~-------~~~-~-------~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~ 157 (367)
.. .. .++.+ ... . -+++++++.+.... +++.+|++.......|.+.+ ++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~iAavivEPv~g~~G~~~~~~~~l~ 242 (431)
T TIGR03251 164 TDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERP-HDIACFIAEPIQGEGGDNHFRPEFLR 242 (431)
T ss_pred CccccccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHhCC-CcEEEEEEeccccCCCCcCCCHHHHH
Confidence 10 00 01110 000 0 12455666676444 57889999988888898763 78
Q ss_pred HHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccC-CCCcee
Q 017726 158 KVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTA-KSVRVF 231 (367)
Q Consensus 158 ~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~-~~~~~~ 231 (367)
+|+++|++ +|+++|+|++++..... ++.....+|+++. +|.+ + ..|++.. +++.+..... ....
T Consensus 243 ~l~~lc~~--~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~~--gK~~--~-~~g~~~~-~~i~~~~~~~~~~~~-- 312 (431)
T TIGR03251 243 AMRALCDE--HDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAF--GKKT--Q-VCGIMAG-RRVDEVADNVFAVPS-- 312 (431)
T ss_pred HHHHHHHH--cCCEEEEecchhccCccchHHHHHhcCCCCCEEEe--cccC--c-cceEEec-chHHHhhhhcccCcc--
Confidence 89999999 99999999998732221 1222345788876 4544 2 2355544 3321111100 0000
Q ss_pred echHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCc-cccCCCccCCCce
Q 017726 232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLK-NCTQKEEWFSDTV 308 (367)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~-~~~~~~~~~~~~~ 308 (367)
..++ .++.+...+++..++++.+.++++ .++.+++.+++.+.|+++ ... +...-. ..+.+
T Consensus 313 ----------~~~~--T~~gnpl~~aaa~a~L~~l~~~~l---~~~~~~~g~~l~~~L~~l~~~~~~~i~~vr--g~G~~ 375 (431)
T TIGR03251 313 ----------RLNS--TWGGNLVDMVRATRILEIIEEERL---VDNARVQGAHLLARLHELAAEFPHLVSNPR--GRGLM 375 (431)
T ss_pred ----------ccCC--CCCCCHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHhCccceeccc--cccee
Confidence 0111 234666777888888998877763 334555566666666553 222 222211 12446
Q ss_pred EEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH--HHhhhhc
Q 017726 309 TAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF--NFQLLFQ 366 (367)
Q Consensus 309 ~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~--~~~~l~~ 366 (367)
+.+.+++......+.+.|.+ .||.+.+.- ...+|+++....+++|+ ..++|++
T Consensus 376 ~~i~~~~~~~~~~~~~~l~~-~Gvl~~~~g----~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 376 CAFDLPSTADRDEVIRQLYR-EGVLLLGCG----ERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred EEEEeCCHHHHHHHHHHHHh-CCeEEecCC----CCeEEEECCccCCHHHHHHHHHHHHh
Confidence 66776432224568888875 499986531 25689887776665544 4555543
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-12 Score=115.86 Aligned_cols=283 Identities=13% Similarity=0.082 Sum_probs=176.8
Q ss_pred ChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC-CCCeEEEEeC------
Q 017726 20 IPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS-PGDRIISFLI------ 92 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~-~gd~vl~~~~------ 92 (367)
++++++++|.. .+. .|.-...+.++++.+++++|.+. +++|.+|+.+-++++..++. +|+.+++..+
T Consensus 55 pS~~m~aAM~~-GDD--~Y~gdpSv~~Lee~vael~G~E~---alpthqGRgaE~Il~~~~~~~~g~e~g~~~~~~~v~h 128 (467)
T TIGR02617 55 VTQSMQAAMMR-GDE--AYSGSRSYYALAESVKNIFGYQY---TIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFS 128 (467)
T ss_pred CCHHHHHHHHc-CCc--ccccCchHHHHHHHHHHHhCCce---EEECCCCchHHHHHHHhhcccccccccccccccccce
Confidence 67888888886 222 23333556799999999999876 68888999999999988887 6666653222
Q ss_pred -CcchHHHHHHHHHhCCceEEEeC----------CCCCCCCHHHHHHHHhccCCCCccEEEEEecCCC-cccccc---HH
Q 017726 93 -GQFSLLWIDQQQRLNFNVDVVES----------DWGEGAKLDVLASKLAADTAHTIKAICIVHNETA-TGVTNN---LS 157 (367)
Q Consensus 93 -~~~~~~~~~~~~~~g~~~~~v~~----------~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~-tG~~~~---~~ 157 (367)
-||.. ....+...|+.++.++. +..+.+|+++++++|.+...++...+...-.+|. -|.+.| +.
T Consensus 129 n~~fet-t~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr 207 (467)
T TIGR02617 129 NYFFDT-TQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLK 207 (467)
T ss_pred EEEEec-chHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHH
Confidence 12221 12346678888777632 2357899999999998643123333333323343 456665 66
Q ss_pred HHHHHHHhcCCCcEEEEeeee----cc-------Cceeecccc------ccceEEEecCCCcccCCCcceeeeeCHH---
Q 017726 158 KVRKLLDEYRHPALFLVDGVS----SI-------CAIDFRMDE------WGIDVALTGSQKALSLPTGMGIVCASPK--- 217 (367)
Q Consensus 158 ~i~~~~~~~~~~~~vi~D~~~----~~-------~~~~~~~~~------~~~d~~~~s~~K~~~g~~g~g~~~~~~~--- 217 (367)
++.++|++ +|+.++.|++= +. +....+..+ ..+|.++.|++|.++.|-| |+++++++
T Consensus 208 ~V~~la~~--~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgApvG-g~Lag~d~~~~ 284 (467)
T TIGR02617 208 AVYEIAKK--YDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCFKDDSFF 284 (467)
T ss_pred HHHHHHHH--cCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCccc-ceEEecchhHH
Confidence 78899999 99999999752 11 122222211 2589999999999977777 88888776
Q ss_pred -HHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCcc
Q 017726 218 -ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKN 296 (367)
Q Consensus 218 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~ 296 (367)
+.++.+...... | |.-+.+..+.-.+-++...|....++ ...++...-.++|.+.|++.|+++
T Consensus 285 ~l~~~~~~~~i~~------------E-Gf~tYGGlagrd~ea~a~Gl~e~~~~---~yl~~ri~qv~yl~~~L~~~Gvpi 348 (467)
T TIGR02617 285 DVYTECRTLCVVQ------------E-GFPTYGGLEGGAMERLAVGLYDGMNL---DWLAYRINQVQYLVNGLEEIGVVC 348 (467)
T ss_pred HHHHHHHhhcccc------------c-CCcCcCchhHHHHHHHHhhhhhcccH---HHHHHHHHHHHHHHHHHHhCCCcE
Confidence 233333221111 0 11123335555555666555554332 234444556679999999999988
Q ss_pred ccCCCccCCCceEEEEc----C----CCCCHHHHHHHHHhhCCeE
Q 017726 297 CTQKEEWFSDTVTAVIV----P----SHINSSEIVRRAWQRYNLS 333 (367)
Q Consensus 297 ~~~~~~~~~~~~~~~~~----~----~~~~~~~l~~~L~~~~gv~ 333 (367)
+.. ++.-++++. | ...++..|+-+|..+.||-
T Consensus 349 ~~~-----Gghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR 388 (467)
T TIGR02617 349 QQA-----GGHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIR 388 (467)
T ss_pred Eec-----CccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcc
Confidence 763 333344432 1 1235566887787776764
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-11 Score=112.96 Aligned_cols=307 Identities=18% Similarity=0.144 Sum_probs=179.4
Q ss_pred hHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHhcCC--CCceEEec-CChhHHHHHHHHcc--CCCCCeEEEEe
Q 017726 21 PDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTT--SGTPFLIP-TTGTGAWESALTNT--LSPGDRIISFL 91 (367)
Q Consensus 21 ~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~~~~--~~~~v~~~-~ggt~al~~~~~~~--~~~gd~vl~~~ 91 (367)
++.+.+++.++... +......+...++-+++.+.+... ..+.+.|+ +||++|+..++... .....+|+...
T Consensus 81 ~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~ 160 (464)
T PRK06938 81 HPVVIEAIQQVLADELPLHTLDLTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQ 160 (464)
T ss_pred CHHHHHHHHHHHHhhhcccccccCCHHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEEC
Confidence 55677777665421 111112344445666666655321 11246565 79999999988642 22346788888
Q ss_pred CCcchHHHHHHHHHhC------------CceEEEeCCCCCC------------CCHHHHHHHHhccC--CCCccEEEEEe
Q 017726 92 IGQFSLLWIDQQQRLN------------FNVDVVESDWGEG------------AKLDVLASKLAADT--AHTIKAICIVH 145 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~------------~d~e~l~~~i~~~~--~~~~~lv~~~~ 145 (367)
.+|++......+. .+ ..+..++.+...+ .+.+.+++.+.+.. .+++.+|++..
T Consensus 161 ~~yHG~t~~als~-t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EP 239 (464)
T PRK06938 161 GGYHGMSQGALSL-MGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEV 239 (464)
T ss_pred CccCCccHHHHhh-cCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEcc
Confidence 8888854211111 11 1233444432111 12567788876421 02578888888
Q ss_pred cCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCCcceeeeeCH
Q 017726 146 NETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPTGMGIVCASP 216 (367)
Q Consensus 146 ~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~ 216 (367)
.....|.+.| +++++++|++ +|+++|.||.+...... ........|+++. .|.++|...+|.+++++
T Consensus 240 iqg~gG~~~p~~~yl~~lr~lc~~--~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~--gKglggG~PlsAv~~~~ 315 (464)
T PRK06938 240 VQGEGGVIPAPIEWLRGLRRITEE--AGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVL--SKAIGGSLPLAVVVYRE 315 (464)
T ss_pred ccCCCCCcCCCHHHHHHHHHHHHH--cCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEEe--eccccCCCceEEEeehh
Confidence 7777787765 7889999999 99999999997643221 1222335788887 68887655578888887
Q ss_pred HHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CC
Q 017726 217 KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GL 294 (367)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~ 294 (367)
++ +.+.... ..+ .+..+...+++..++++.+.+++ ..++..++.++|.+.|+++ .+
T Consensus 316 ~~-~~~~~~~---------------~~~---T~~gnpla~Aaa~a~L~~l~~~~---l~~~~~~~G~~l~~~L~~l~~~~ 373 (464)
T PRK06938 316 WL-DTWQPGA---------------HAG---TFRGNQMAMAAGSATLRYIKEHR---LAEHAAAMGERLREHLRQLQRDY 373 (464)
T ss_pred Hh-hccCCCC---------------CCC---CCCcCHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHhC
Confidence 74 4332110 112 33466667777888888887764 4556777788888888775 24
Q ss_pred ccccCCCccCCCceEEEEcCCC--C---------C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 295 KNCTQKEEWFSDTVTAVIVPSH--I---------N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~--~---------~---~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
+++..-. -.+.++.+.+.+. . + ...+.+.+.+ +|+.+.++- ..++.+|+.+....+++|+
T Consensus 374 ~~i~~Vr--G~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~g--~~~~~l~~~Ppl~it~~ei 447 (464)
T PRK06938 374 PQLGDVR--GRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLR-RGLILELGG--RHGSVVRFLPPLIITAEQI 447 (464)
T ss_pred CCeeeee--ccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHH-CCeEEeecC--CCCCEEEEECCCccCHHHH
Confidence 4333211 1233455554211 0 1 2346666765 599887531 1246899986666665544
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.3e-12 Score=109.45 Aligned_cols=318 Identities=13% Similarity=0.083 Sum_probs=185.5
Q ss_pred ChHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccC-CCCCeEEE
Q 017726 20 IPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTL-SPGDRIIS 89 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~-~~gd~vl~ 89 (367)
.|..+++........ -..|...+..+-+|+.+|+++ |.+ ++++|.+|+|++.|+..++..++ .+.+-|++
T Consensus 87 fp~Dai~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~Gvli 166 (475)
T KOG0258|consen 87 FPTDAIKRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLI 166 (475)
T ss_pred CCHHHHHHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEe
Confidence 445555554443322 223444455666677776665 432 44679999999999998887653 57788999
Q ss_pred EeCCcchHHHHHHHHHhCCceE--EEeCCCCCCCCHHHHHHHHhccC-CCCccEEEEEecCCCcccccc---HHHHHHHH
Q 017726 90 FLIGQFSLLWIDQQQRLNFNVD--VVESDWGEGAKLDVLASKLAADT-AHTIKAICIVHNETATGVTNN---LSKVRKLL 163 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~--~v~~~~~~~~d~e~l~~~i~~~~-~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~ 163 (367)
+.|-|+-+. ..++. .|...+ .++-+..|.+|.++|++.+++.. .-+++++++.+|.||||.+.. +++|..+|
T Consensus 167 PiPQYPLYs-Ati~l-~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa 244 (475)
T KOG0258|consen 167 PIPQYPLYS-ATISL-LGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFA 244 (475)
T ss_pred ecCCCchhH-HHHHH-hCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHH
Confidence 999776543 34444 444433 34444578999999999888731 146899999999999999874 78888899
Q ss_pred HhcCCCcEEEEeeeeccCc-----eee-------ccccccc----eEEEecCCCcccCCCc--ceeee---eCHHHHHHh
Q 017726 164 DEYRHPALFLVDGVSSICA-----IDF-------RMDEWGI----DVALTGSQKALSLPTG--MGIVC---ASPKALEAS 222 (367)
Q Consensus 164 ~~~~~~~~vi~D~~~~~~~-----~~~-------~~~~~~~----d~~~~s~~K~~~g~~g--~g~~~---~~~~~~~~~ 222 (367)
++ .+++++.|+.|.--. ... .+..... -+...|.||.+.|-.| .|++= ..++..+++
T Consensus 245 ~~--~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi 322 (475)
T KOG0258|consen 245 AE--EGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQI 322 (475)
T ss_pred HH--cCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHH
Confidence 98 999999999753211 110 1111111 2444578888766433 36653 345554443
Q ss_pred ccCCCCceeechHHHH-HHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCC
Q 017726 223 KTAKSVRVFFDWKDYI-KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQK 300 (367)
Q Consensus 223 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 300 (367)
.+...-........+. ....-..-.++.++. +....+ -+.+.......+..+.+.++++ |+.+..+.
T Consensus 323 ~Kl~si~lc~~V~GQ~~vdl~VnPP~Pgd~Sy----------~~~~~E-kd~il~~l~~ra~l~~~~~ns~~gi~cn~~q 391 (475)
T KOG0258|consen 323 KKLASIKLCPQVSGQKLVDLVVNPPKPGDPSY----------DLFSSE-KDGILSSLRSRAKLTEDAFNSLEGISCNPVQ 391 (475)
T ss_pred HHHHhhhhcCCccchhhhceecCCCCCCCcch----------hhhhhh-hHhHHHHHHHHhHHHHHHHhhcCceeeccCc
Confidence 3221111000000000 000001101222222 222222 2456667788888999999998 99998874
Q ss_pred CccCCCceEEEEcCC---------CCCH-HHHHHHHHhhCCeEEccCCCC--CCCcE-EEEeecCCC
Q 017726 301 EEWFSDTVTAVIVPS---------HINS-SEIVRRAWQRYNLSLGLGLNK--VAGKV-FRIGHLGHL 354 (367)
Q Consensus 301 ~~~~~~~~~~~~~~~---------~~~~-~~l~~~L~~~~gv~v~~g~~~--~~~~~-iRi~~~~~~ 354 (367)
+....-. -+.+|. ++.+ .-.|..|++.-||.+.||.++ ..|.+ +|..+....
T Consensus 392 GAMY~fP--~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiLp~~ 456 (475)
T KOG0258|consen 392 GAMYLFP--QISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTILPPG 456 (475)
T ss_pred cceeecc--cccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEeecCch
Confidence 3322221 122231 1222 235678888999999998654 34444 999876644
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.2e-11 Score=112.15 Aligned_cols=287 Identities=15% Similarity=0.163 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC----------C---C-CCeEEEEeCCcchHHHHHHHHHhC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL----------S---P-GDRIISFLIGQFSLLWIDQQQRLN 107 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~----------~---~-gd~vl~~~~~~~~~~~~~~~~~~g 107 (367)
+...++.+.++++.+-+..+.+.|++||++|++.++.... . + ..+|+....+|++......+. .+
T Consensus 92 ~~~~~la~~l~~~~~p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~-~~ 170 (443)
T PRK08297 92 VEMARFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSL-TN 170 (443)
T ss_pred HHHHHHHHHHHhhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhh-cC
Confidence 4455676777766532222469999999999999886431 1 1 257888888888864211111 11
Q ss_pred C--------ce---EEEeCCC------CCC---------CCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----HH
Q 017726 108 F--------NV---DVVESDW------GEG---------AKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LS 157 (367)
Q Consensus 108 ~--------~~---~~v~~~~------~~~---------~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~ 157 (367)
. .. ..++.+. +.. -+++++++.+.+++ +++.+|++.......|.+.+ ++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~iAavI~EPi~g~~G~~~pp~~yl~ 249 (443)
T PRK08297 171 TDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFERHP-HDIACFIAEPIQGEGGDNHFRPEFFA 249 (443)
T ss_pred CcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCC-CcEEEEEEccccCCCCCcCCCHHHHH
Confidence 0 00 0011110 000 02456667776554 57889999988888887753 78
Q ss_pred HHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceee
Q 017726 158 KVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF 232 (367)
Q Consensus 158 ~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~ 232 (367)
+++++|++ +|+++|.||++...... ........|++++ +|.+. +|.++..+++.+.........
T Consensus 250 ~lr~lc~~--~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gK~l~----~~a~l~~~~i~~~~~~~~~~~--- 318 (443)
T PRK08297 250 AMRELCDE--HDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVAF--GKKTQ----VCGIMAGRRVDEVEDNVFAVS--- 318 (443)
T ss_pred HHHHHHHH--cCCEEEEechhhccCccchHHHHHhcCCCCCEEEe--ccccc----ccceecchHHHHhhhhhccCc---
Confidence 89999999 99999999998633221 1112235788876 67762 333344444322111000000
Q ss_pred chHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCCceEE
Q 017726 233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTA 310 (367)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~ 310 (367)
....+ .+..+...+++..++++.+.+.+ +.++.+++.+++.+.|+++ .++....+-. ..+.++.
T Consensus 319 -------~~~~~---T~~gnpl~~aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vr-g~G~~~~ 384 (443)
T PRK08297 319 -------SRINS---TWGGNLVDMVRARRILEVIEEDG---LVENAARQGEYLLARLEELAAEFPAVVSNVR-GRGLMCA 384 (443)
T ss_pred -------cccCC---CCCccHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHCCCcceeee-ccceEEE
Confidence 00112 33456666777777888877654 4556777788888888775 2332210000 1345667
Q ss_pred EEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 311 VIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 311 ~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
+.+++......+++.|.+ +||.+.+.- ...+|+.+....+++++.
T Consensus 385 i~~~~~~~~~~~~~~l~~-~Gvl~~~~~----~~~lr~~P~l~~t~~eid 429 (443)
T PRK08297 385 FDLPTTADRDEVIRRLWE-EGVLVLPCG----ERSIRFRPALTVTTEEID 429 (443)
T ss_pred EEecCHHHHHHHHHHHHH-CCEEEecCC----CCeEEEECCccCCHHHHH
Confidence 777432234578888875 599987531 246899766555554443
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-11 Score=122.97 Aligned_cols=288 Identities=12% Similarity=0.046 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCcchHHHHHHH-------HHhC----C
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQFSLLWIDQQ-------QRLN----F 108 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~-------~~~g----~ 108 (367)
+...++.+++.+.+... .+.+.|++||++|+..+++.. .....+|++...+|++....... ...+ .
T Consensus 663 ~~~~~lAe~L~~~~p~~-~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~ 741 (1013)
T PRK06148 663 DAIVAYAERLTATLPDG-LTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPD 741 (1013)
T ss_pred HHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCC
Confidence 44567777777776422 245899999999999988642 23345788888888875311111 0001 1
Q ss_pred ceEEEeCCCC--CCC---C-------HHHHHHHHhc---cCCCCccEEEEEecCCCcccccc----HHHHHHHHHhcCCC
Q 017726 109 NVDVVESDWG--EGA---K-------LDVLASKLAA---DTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHP 169 (367)
Q Consensus 109 ~~~~v~~~~~--~~~---d-------~e~l~~~i~~---~~~~~~~lv~~~~~~n~tG~~~~----~~~i~~~~~~~~~~ 169 (367)
.+..++.+.. ..+ + .+.+++.++. .. ..+.+|++.......|.+.+ +++++++|++ +|
T Consensus 742 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~--~g 818 (1013)
T PRK06148 742 HVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKG-RGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRA--AG 818 (1013)
T ss_pred CceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccC-CceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHH--hC
Confidence 1222221110 001 1 1345555542 22 45788888888877888776 8899999999 99
Q ss_pred cEEEEeeeeccCc-e-----eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhc
Q 017726 170 ALFLVDGVSSICA-I-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL 243 (367)
Q Consensus 170 ~~vi~D~~~~~~~-~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (367)
+++|.||++.... . .+.......|+++. .|.+++...+|.+++++++.+.+.... .+.
T Consensus 819 ~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~--gK~lggG~Plgav~~~~ei~~~~~~g~---~~~----------- 882 (1013)
T PRK06148 819 GVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTM--GKPIGNGHPMGAVVTTREIADSFDNGM---EYF----------- 882 (1013)
T ss_pred CEEEEEecccCCCCCCCcchhhhhcCCCcceeee--cccccCCcceEEEEEcHHHHhhccCCC---ccc-----------
Confidence 9999999985322 1 11222335788776 799977666899999999887664310 000
Q ss_pred CCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCCceEEEEcCCCC----
Q 017726 244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSHI---- 317 (367)
Q Consensus 244 ~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~~---- 317 (367)
+ .+..+...+++..++++.+.+++ +.++..+..++|++.|+++ .+.++..-. -.+.++.+.+..+.
T Consensus 883 ~---Tf~gnpla~aaa~a~L~~i~~e~---l~~~~~~~G~~l~~~L~~l~~~~~~i~~Vr--G~Gl~~gvel~~~~~~~~ 954 (1013)
T PRK06148 883 N---TFGGNPVSCAIGLAVLDIIEDED---LQRNALEIGNYLLAGLRELQDRFDIIGDVR--GMGLFLGIELVTDRKTKA 954 (1013)
T ss_pred c---CCCCCHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHhCCCceEEe--eeceEEEEEecCCccccC
Confidence 2 33466666777788888887765 4456777888888888775 343332111 12334555542110
Q ss_pred -C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 318 -N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 318 -~---~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
+ ...+++.+.+ +||.+.+. . ..++.+||.+....++++++
T Consensus 955 ~~~~~~~~i~~~~~~-~Gvl~~~~-g-~~~~vlr~~Ppl~it~~~id 998 (1013)
T PRK06148 955 PATAIARYVKNGARE-RGILIGTE-G-PHDNVLKIRPPLIFSRADAD 998 (1013)
T ss_pred ccHHHHHHHHHHHHh-CCeEEecc-C-CCCCEEEEeCCccCCHHHHH
Confidence 1 2357777765 49998653 1 12577999876666665443
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-11 Score=113.42 Aligned_cols=270 Identities=14% Similarity=0.126 Sum_probs=159.8
Q ss_pred ceEEecCChhHHHHHHHHccC---C-----------------------C---CCeEEEEeCCcchHHHHHHHHHh-----
Q 017726 61 TPFLIPTTGTGAWESALTNTL---S-----------------------P---GDRIISFLIGQFSLLWIDQQQRL----- 106 (367)
Q Consensus 61 ~~v~~~~ggt~al~~~~~~~~---~-----------------------~---gd~vl~~~~~~~~~~~~~~~~~~----- 106 (367)
+.+.|++||++|++.++.... . + ..+||....+|++..........
T Consensus 123 ~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~ 202 (464)
T TIGR00699 123 DQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIH 202 (464)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCcccc
Confidence 469999999999999886421 0 1 12688888888886422111100
Q ss_pred --C---CceEEEeCCCC---C-----------CCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----HHHHHHHH
Q 017726 107 --N---FNVDVVESDWG---E-----------GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLL 163 (367)
Q Consensus 107 --g---~~~~~v~~~~~---~-----------~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~~i~~~~ 163 (367)
+ .....+|.+.. + .-+++.++++++++. .++.+|++.......|.+.| +++++++|
T Consensus 203 ~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc 281 (464)
T TIGR00699 203 KLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWH-KPVAAIIVEPIQSEGGDNHASPDFFRKLRDIT 281 (464)
T ss_pred ccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcC-CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHH
Confidence 1 11122222210 0 013566778886543 46889999988888898887 88999999
Q ss_pred HhcCCCcEEEEeeeeccCcee-----eccccc--cceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHH
Q 017726 164 DEYRHPALFLVDGVSSICAID-----FRMDEW--GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 164 ~~~~~~~~vi~D~~~~~~~~~-----~~~~~~--~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (367)
++ +|+++|+||++...... ...... ..|++++ +|.+++ .|+++.+ +. +... ..
T Consensus 282 ~~--~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t~--gK~lg~---gG~~~~~-~~---~~~~-~~-------- 341 (464)
T TIGR00699 282 KK--HNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTF--SKKFQT---AGYFFHD-PA---FRPN-KP-------- 341 (464)
T ss_pred HH--cCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEEe--hhhhcc---CCccccc-hh---ccCC-CC--------
Confidence 99 99999999998633221 111112 2788666 788731 1443333 21 1110 00
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCc-cccCCCccCCCceEEEEc
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLK-NCTQKEEWFSDTVTAVIV 313 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~-~~~~~~~~~~~~~~~~~~ 313 (367)
+..++ .+..+...+++..++++.+.+++ ..++..+..++|++.|+++ .++ ++..-...-.+.++.+.+
T Consensus 342 ----~~~~~--T~~gnp~~~aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~ 412 (464)
T TIGR00699 342 ----YRQFN--TWMGDPSRALILREIIQEIKRKD---LLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDT 412 (464)
T ss_pred ----ccccc--CCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEec
Confidence 00111 33466667777888888887765 3446667777888888775 243 222100001345666776
Q ss_pred CCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH--Hhhhh
Q 017726 314 PSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN--FQLLF 365 (367)
Q Consensus 314 ~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~--~~~l~ 365 (367)
++......+.+.+.++ |+.+... ..+.+|+.+....+++|+. ..+|+
T Consensus 413 ~~~~~~~~i~~~~~~~-Gvl~~~~----g~~~ir~~Ppl~it~~eid~~~~~l~ 461 (464)
T TIGR00699 413 PDEAKRDKLLKKARNN-GVNIGGC----GVKAIRLRPMLVFQKHHADIFLEIIS 461 (464)
T ss_pred CCHHHHHHHHHHHHHC-CcEEecC----CCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 4322245678888765 9998642 2367999987777766554 44443
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.8e-11 Score=114.84 Aligned_cols=316 Identities=16% Similarity=0.095 Sum_probs=192.5
Q ss_pred ccccCCCC--CChHHHHHHHccCCC---C--CCC----CcHHHHHHHHHHHHHHHhcCCCCceEEecCChh---HHHHHH
Q 017726 11 HLFVPGPV--HIPDQVIRAMNRNNE---D--YRS----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGT---GAWESA 76 (367)
Q Consensus 11 ~~~~~~p~--~~~~~v~~a~~~~~~---~--~~~----~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt---~al~~~ 76 (367)
.+.+.|-. -+|..+.+.+.+... . .+. .+..+..-++..+++++.|.+-...=++ .++| +|+.++
T Consensus 82 ~fiG~G~y~~~~P~vi~~~i~~~~~~yTaYTPYQpEisQG~Lqal~e~Qtmi~~LtGm~vaNASl~-D~atA~aEA~~ma 160 (954)
T PRK12566 82 SLIGMGYHGTVTPTVILRNVLENPGWYTAYTPYQPEIAQGRLEALLNFQQMTIDLTGLDLANASLL-DEATAAAEAMALA 160 (954)
T ss_pred ccccccccCCcCcHHHHHHHHhCchhhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCchhhhhhhc-cchhHHHHHHHHH
Confidence 34444443 446666466555321 1 122 2334556788999999999983221133 4444 555554
Q ss_pred HHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc
Q 017726 77 LTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN 154 (367)
Q Consensus 77 ~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~ 154 (367)
....-.+..+++++..-|+..+ ....++..|++++. ++++++++ ..+..+++.+| |..|.+.
T Consensus 161 ~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-----------~~~~~~~~----~~~~~v~vq~P-~~~G~i~ 224 (954)
T PRK12566 161 KRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-----------DAVDNLAA----HAVFGALLQYP-DTHGEIR 224 (954)
T ss_pred HHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE-----------cchhhcCC----CCEEEEEEECC-CCceEEc
Confidence 4332223567888877776654 34566777887774 33344444 24567777776 5899999
Q ss_pred cHHHHHHHHHhcCCCcEEEEeeee-ccCceeeccccccceEEEecCCCccc-----CCCcceeeeeCHHHHHHhccCCCC
Q 017726 155 NLSKVRKLLDEYRHPALFLVDGVS-SICAIDFRMDEWGIDVALTGSQKALS-----LPTGMGIVCASPKALEASKTAKSV 228 (367)
Q Consensus 155 ~~~~i~~~~~~~~~~~~vi~D~~~-~~~~~~~~~~~~~~d~~~~s~~K~~~-----g~~g~g~~~~~~~~~~~~~~~~~~ 228 (367)
|+++|.+++|+ .|+++++-.-- +++.+ -+..++|+||++++.+. |+ |.+..|++.+++++.+++.....+
T Consensus 225 d~~~i~~~~h~--~gal~~~~~d~laL~ll-~~Pge~GADI~vG~~Q~-fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG 300 (954)
T PRK12566 225 DLRPLIDQLHG--QQALACVAADLLSLLVL-TPPGELGADVVLGSTQR-FGVPMGYGGPHAAYFACRDDYKRAMPGRIIG 300 (954)
T ss_pred cHHHHHHHHHH--cCCEEEEEeCHHHHhCC-CChhhcCCcEEeeCCCc-CCCCCCCCCCCeeeeeehHHHHhhCCCCccc
Confidence 99999999999 89986633221 22222 23456799999887653 32 234469999999998888765542
Q ss_pred ---------ceeechHH--HHHHhhcCCccCCCCcHHHHHHHHHHHH--HHHHhChHHHHHHHHHHHHHHHHHHHHcCCc
Q 017726 229 ---------RVFFDWKD--YIKFYNLGTFWPYTPSIQLLYGLRAALD--LIFEEGLENVIERHRRLGKATRLAVEAWGLK 295 (367)
Q Consensus 229 ---------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~al~~al~--~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~ 295 (367)
.+.+.++. +-.|-+..+ .+.-....+.|+.+++. ++..+|++++.+++..++.++.+.|++.|++
T Consensus 301 ~s~D~~G~~a~~l~LqtREQHIRReKAt--SNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~g~~ 378 (954)
T PRK12566 301 VSRDARGNTALRMALQTREQHIRREKAN--SNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEAKGIK 378 (954)
T ss_pred eeecCCCCeeeehhhhHHHHHhhhcccc--chhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 11122333 233444444 33333344455555544 3456789999999999999999999999988
Q ss_pred cccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 296 NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
+... .++.. +.+++ . .+..++.++..++ ||-++-- .+..+.||+.-+.+..|+.
T Consensus 379 ~~~~--~fF~~--~~v~~-~-~~~~~~~~~a~~~-~~n~r~~----~~~~~~~s~de~~~~~~~~ 432 (954)
T PRK12566 379 RLNR--HFFDT--LTLEV-G-GAQAAIIESAEAA-RINLRIL----GRGRLGVSLDETCDEATVA 432 (954)
T ss_pred cccC--Cccce--EEEEc-c-CCHHHHHHHHHHC-CCeeEEe----CCCeEEEEeCCCCCHHHHH
Confidence 7653 22332 33444 2 1466777777554 8777642 2346888876666665543
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-10 Score=106.42 Aligned_cols=309 Identities=14% Similarity=0.129 Sum_probs=176.6
Q ss_pred hHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHhcCCC-C-ceEEecCChhHHHHHHHHcc--CCCCCeEEEEeC
Q 017726 21 PDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTTS-G-TPFLIPTTGTGAWESALTNT--LSPGDRIISFLI 92 (367)
Q Consensus 21 ~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~~~~~-~-~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~ 92 (367)
.+++.+++.++... +......+...++.+++.+.+.... . ..+.+++||++|++.++... ....++|+....
T Consensus 76 ~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~ 155 (459)
T PRK06931 76 HPDVLQSIQDVLTSGLPLHTLDLTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSG 155 (459)
T ss_pred CHHHHHHHHHHHhhhccccccccCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECC
Confidence 45666666665431 1111223555677777777764321 1 22455689999999988642 234557888888
Q ss_pred CcchHHHHHHHHH--h---------CCceEEEeCCCCCCC--------CHHHH----HHHHhcc--CCCCccEEEEEecC
Q 017726 93 GQFSLLWIDQQQR--L---------NFNVDVVESDWGEGA--------KLDVL----ASKLAAD--TAHTIKAICIVHNE 147 (367)
Q Consensus 93 ~~~~~~~~~~~~~--~---------g~~~~~v~~~~~~~~--------d~e~l----~~~i~~~--~~~~~~lv~~~~~~ 147 (367)
+|++......+.. . ...+..++.+...+. +.+.+ ++.+++. ..+++.+|++....
T Consensus 156 ~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiq 235 (459)
T PRK06931 156 GYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQ 235 (459)
T ss_pred CcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEcccc
Confidence 8888642111110 0 012333443321110 12322 3333321 11357888888887
Q ss_pred CCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCCcceeeeeCHHH
Q 017726 148 TATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKA 218 (367)
Q Consensus 148 n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~ 218 (367)
...|.+.+ +++++++|++ +|+++|.||.+...... +.......|+++. .|.++|...+|.+..++++
T Consensus 236 g~gG~~~~~~~yl~~lr~lc~~--~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~--gK~l~gG~Pi~av~~~~~~ 311 (459)
T PRK06931 236 GEGGVNPAPVEWLQKIREVTQK--HGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVM--SKAVGGGLPLAVLGIKKEF 311 (459)
T ss_pred CCCCCcCCCHHHHHHHHHHHHH--cCCEEEEecchhcCCcCchHHHhhhcCCCCCEEEe--cccccCCcceeeeeeHHHH
Confidence 77787765 7889999999 99999999997643211 1222335788877 6888765557888887663
Q ss_pred HHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCcc
Q 017726 219 LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKN 296 (367)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~ 296 (367)
+.+.+.. ..+ .+..+...+++..++++.+++++ ..++..+..++|.+.|+++ ..++
T Consensus 312 -~~~~~~~---------------~~~---T~~gnpla~aaala~L~~l~~~~---l~~~~~~~G~~l~~~L~~l~~~~~~ 369 (459)
T PRK06931 312 -DAWQPGG---------------HTG---TFRGNQLAMATGLTTLKILKEEN---LAQNAAERGEWLKAQLAELQKRYPC 369 (459)
T ss_pred -hhccCCC---------------CCC---CCCCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4442110 112 33466667777788888887765 3446677777777777765 2333
Q ss_pred ccCCCccCCCceEEEEcCCCC-----------C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 297 CTQKEEWFSDTVTAVIVPSHI-----------N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~-----------~---~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
+..-. -.+.++.+.+.+.. + ...+.+.+.+ .||.+.+.- ..++.+|+.+....++++++
T Consensus 370 i~~vr--G~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~~--~~~~~l~~~Ppl~it~~eid 442 (459)
T PRK06931 370 IGNVR--GRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFE-NGLLLERGG--RNGNVVRLLPPLLITQAECE 442 (459)
T ss_pred eEeEe--cCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHH-CCcEEeecC--CCCCEEEEECCCCcCHHHHH
Confidence 32211 13334545542110 1 2346666654 599886531 12467999877766665543
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-11 Score=104.61 Aligned_cols=309 Identities=16% Similarity=0.081 Sum_probs=186.2
Q ss_pred ChHHHHHHHccCCCC--CC-CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHc--cCCCCCeEEEEeCCc
Q 017726 20 IPDQVIRAMNRNNED--YR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQ 94 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~--~~~~gd~vl~~~~~~ 94 (367)
-.+++.+++.++... |. .-...+-..++.+.|...+-.+- ..+.|+|||++|+++++.- +....-.+|....+|
T Consensus 67 chP~v~~a~~kQl~~l~H~t~~~~~~pi~~~Ae~L~s~~P~~l-~~vfF~nsGsEANelal~mar~Yt~~~diIa~r~~Y 145 (442)
T KOG1404|consen 67 CHPDVVAAAVKQLKKLYHTTSGYLNPPIHDLAEALVSKLPGDL-KVVFFVNSGSEANELALKMARLYTGNLDIIARRNSY 145 (442)
T ss_pred CChHHHHHHHHhhhhhEEeeccccCCcHHHHHHHHHHhCCCCc-eEEEEecCCchHHHHHHHHHHHhcCCceEEEeeccc
Confidence 356777777776432 11 11112233455555665554332 2489999999999987753 122233677777778
Q ss_pred chHHHHHHHHHhCCceEEEeCC-----------CC---CCC--C---------HHHHHHHHhccCCCCccEEEEEecCCC
Q 017726 95 FSLLWIDQQQRLNFNVDVVESD-----------WG---EGA--K---------LDVLASKLAADTAHTIKAICIVHNETA 149 (367)
Q Consensus 95 ~~~~~~~~~~~~g~~~~~v~~~-----------~~---~~~--d---------~e~l~~~i~~~~~~~~~lv~~~~~~n~ 149 (367)
++.... .+...+.....-+.+ ++ +.+ + .++++..+...+.+++..++..+....
T Consensus 146 HG~t~~-t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGv 224 (442)
T KOG1404|consen 146 HGNTLY-TLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGV 224 (442)
T ss_pred cCCchh-hcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccC
Confidence 886421 111222221111110 00 000 1 134444554444356778888888888
Q ss_pred cccccc----HHHHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCCcceeeeeCHHHHH
Q 017726 150 TGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALE 220 (367)
Q Consensus 150 tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~ 220 (367)
-|.+.+ +++..++|++ +|.++|.|++++....- +.-...-.||++ ..|.++....+|.++.++++.+
T Consensus 225 gG~v~~p~GYlka~~~~v~k--~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvT--mAKgiGnG~Pl~AVvtt~EIa~ 300 (442)
T KOG1404|consen 225 GGIVELPPGYLKAAYKVVRK--RGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVT--MAKGIGNGFPLGAVVTTPEIAD 300 (442)
T ss_pred CccccCCchHHHHHHHHHHH--cCCEEEehhhhhccccccccccccccCCCccHHH--HHhhccCCCcceeeecCHHHHH
Confidence 888864 8899999999 99999999998754331 222222356654 5788877777899999999988
Q ss_pred HhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCcccc
Q 017726 221 ASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCT 298 (367)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~ 298 (367)
.+..... ++ +.+..+....++-.+.|+.+.++ ++.++......+|.+.|.++ +.+++.
T Consensus 301 v~~~~~~---~f--------------nTyggnP~a~avg~aVL~Vikee---~LqE~aa~vG~yl~~~l~~l~d~h~iIG 360 (442)
T KOG1404|consen 301 VLNQKSS---HF--------------NTYGGNPVACAVGLAVLKVIKEE---NLQENAAEVGSYLLEKLAALKDKHPIIG 360 (442)
T ss_pred HHHhccc---cc--------------cccCCCchhHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHhhcCCcee
Confidence 7765422 11 12223333334445577777765 56668888999999999996 677777
Q ss_pred CCCccCCCceEEEEcCCCC----CH-----HHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 299 QKEEWFSDTVTAVIVPSHI----NS-----SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~----~~-----~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
+-.. .+.++-+.+-++. ++ ..+-+.++ ++|+.| |.....++.|||++--.++.+|+
T Consensus 361 dVRG--~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~ck-e~Gvlv--g~g~i~G~vfriaPPlciT~edi 425 (442)
T KOG1404|consen 361 DVRG--RGLMLGVELVSDKSEPKPPATAEGAVIGEQCK-ELGVLV--GKGGIHGNVFRIAPPLCITKEDI 425 (442)
T ss_pred eccc--ceeEEEEEEecccCCCCCcchHHHHHHHHHHH-HhCeee--ecccccceEEEecCCeeccHHHH
Confidence 5221 2223333331111 11 13556664 569999 55556677999998778888777
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-11 Score=111.73 Aligned_cols=227 Identities=22% Similarity=0.211 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC--------CCCCeEEEEeCCcchHHHHHHHH------H
Q 017726 40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--------SPGDRIISFLIGQFSLLWIDQQQ------R 105 (367)
Q Consensus 40 ~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~------~ 105 (367)
..+...++.+.|.+.++- ..+.+.+++||++|++.++.... ....+|+....+|++........ +
T Consensus 57 ~~~~~~~la~~L~~~~p~-~~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~ 135 (339)
T PF00202_consen 57 THPEAAELAEKLAELFPG-GLDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYR 135 (339)
T ss_dssp EEHHHHHHHHHHHHHSST-TEEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHH
T ss_pred eccchhhhhhhhhhcccc-ccceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCcccc
Confidence 345667888888888844 23469999999999999886433 23457888888888753211110 0
Q ss_pred --hC---CceEEEeCCCCCC-----CCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----HHHHHHHHHhcCCCcE
Q 017726 106 --LN---FNVDVVESDWGEG-----AKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPAL 171 (367)
Q Consensus 106 --~g---~~~~~v~~~~~~~-----~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~~i~~~~~~~~~~~~ 171 (367)
.+ ..+..+|.+.... -..+.+++.+.+...++..+|++.......|...+ +++++++|++ +|++
T Consensus 136 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~--~gil 213 (339)
T PF00202_consen 136 KGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCRE--HGIL 213 (339)
T ss_dssp TTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHH--TT-E
T ss_pred ccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccc--cccc
Confidence 11 2345566552111 01122333333321146778888888877787764 7889999999 9999
Q ss_pred EEEeeeeccCce-----eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCc
Q 017726 172 FLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTF 246 (367)
Q Consensus 172 vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (367)
+|+||++..... ........+|+++++ |.+++...+|.+++++++.+.+..... +.
T Consensus 214 lI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~g--K~l~gG~p~sav~~~~~i~~~~~~~~~----------------~~- 274 (339)
T PF00202_consen 214 LIADEVQTGFGRTGKFFASEHYGVDPDIVTFG--KGLGGGLPISAVLGSEEIMEAFQPGSH----------------GS- 274 (339)
T ss_dssp EEEEETTTTTTTTSSSSGHHHHTSSSSEEEEE--GGGGTTSSEEEEEEEHHHHTTSCTTSS----------------TC-
T ss_pred eecccccccccccCCccceecccccCcccccc--cchhhhhhcccccccchhhcccccccc----------------cc-
Confidence 999999874321 122233457999885 999877668999999998776643211 11
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc
Q 017726 247 WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 247 ~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 292 (367)
.+..+...+++..++++.+++.++ .++..+..++|.+.|+++
T Consensus 275 -T~~g~p~~~aaa~~~l~~~~~~~~---~~~~~~~g~~l~~~L~~l 316 (339)
T PF00202_consen 275 -TFGGNPLSCAAALATLEILEEEDL---LERVRELGERLREGLREL 316 (339)
T ss_dssp -TTTT-HHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHH
T ss_pred -ccccchHhhhhhhhHHHhhccHHH---HHHHHHHHHHHHHHHHHH
Confidence 334666677788888888888753 345566677777777664
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-11 Score=113.10 Aligned_cols=222 Identities=17% Similarity=0.142 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCC-CeEEEE-eCCcchHH-HHHH--HHHhCCc--e--EEE
Q 017726 44 TKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPG-DRIISF-LIGQFSLL-WIDQ--QQRLNFN--V--DVV 113 (367)
Q Consensus 44 ~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~g-d~vl~~-~~~~~~~~-~~~~--~~~~g~~--~--~~v 113 (367)
..++.+.|.+++.. .+.+.|++||++|++.++... .-.| .+|+.. ..++++.. +... ....+.. . ..+
T Consensus 90 ~~~la~~l~~~~p~--~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~ 167 (431)
T PRK06209 90 ELDAAESFLELIDG--ADMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTV 167 (431)
T ss_pred HHHHHHHHHHhCCc--cceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhcccc
Confidence 34667777777632 236999999999999988742 1123 345444 22333211 1000 0000110 0 011
Q ss_pred eCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceee---c-ccc
Q 017726 114 ESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF---R-MDE 189 (367)
Q Consensus 114 ~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~---~-~~~ 189 (367)
... .-|++++++++++.. .++.+|++.......+....++++.++|++ +|+++|+|+++....... . ...
T Consensus 168 ~~~---~~d~~~l~~~l~~~~-~~~aavi~Epv~g~~~~~~~l~~l~~lc~~--~g~lLI~DEv~tG~~~~~~g~~~~~g 241 (431)
T PRK06209 168 TFR---YNDIASLEALFEDHP-GRIACVILEPATADEPQDGFLHEVRRLCHE--NGALFILDEMITGFRWHMRGAQKLYG 241 (431)
T ss_pred ccC---CCCHHHHHHHHHhCC-CCEEEEEEccccCCCCCHHHHHHHHHHHHH--cCCEEEEEcccccCCcCcchhhHHhC
Confidence 111 127899999987543 356677776543222222238899999999 999999999875322211 0 112
Q ss_pred ccceEEEecCCCcccCCCcceeeeeCHHHHHH--hccCC-CCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHH
Q 017726 190 WGIDVALTGSQKALSLPTGMGIVCASPKALEA--SKTAK-SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLI 266 (367)
Q Consensus 190 ~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~ 266 (367)
...|+++ .+|.+++...+|.+++++++.+. +.... ...+.. ++ .++++...+++..++++.+
T Consensus 242 v~PDi~t--~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~~~~-----------~~--T~~~np~~~aaa~a~l~~i 306 (431)
T PRK06209 242 IVPDLSC--FGKALGNGFAVSALAGKREYMELGGLEHTDRERVFLL-----------ST--THGAETHALAAAIATMAIY 306 (431)
T ss_pred CCcceee--ehhhhcCCcccEEEEEHHHHHhhhcccccCCCCceee-----------cc--CCCCCHHHHHHHHHHHHHH
Confidence 2467654 58999765446889999888765 21110 011111 22 3456677778888899998
Q ss_pred HHhChHHHHHHHHHHHHHHHHHHHH
Q 017726 267 FEEGLENVIERHRRLGKATRLAVEA 291 (367)
Q Consensus 267 ~~~g~~~~~~~~~~~~~~l~~~L~~ 291 (367)
.+++ +.++..++.+++++.|++
T Consensus 307 ~~~~---~~~~~~~~g~~l~~~L~~ 328 (431)
T PRK06209 307 RDED---VIERLHEQGAKLAAGVNE 328 (431)
T ss_pred hccC---HHHHHHHHHHHHHHHHHH
Confidence 8765 344556666666666655
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.3e-10 Score=111.38 Aligned_cols=212 Identities=17% Similarity=0.062 Sum_probs=131.0
Q ss_pred HHHHHHHhc----cCCCCccEEEEEec-CCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eecccc
Q 017726 124 DVLASKLAA----DTAHTIKAICIVHN-ETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDE 189 (367)
Q Consensus 124 e~l~~~i~~----~~~~~~~lv~~~~~-~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~ 189 (367)
+.+++.|++ ...+++.+|++... ....|.+.+ ++.++++|++ +|+++|.||++..... ..+...
T Consensus 567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~--~gilLI~DEV~TGfGRtG~~fa~e~~g 644 (817)
T PLN02974 567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRS--RKIPVIFDEVFTGLWRLGVESAWELLG 644 (817)
T ss_pred HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHH--hCCEEEEeecccCCCcccchhhHHhcC
Confidence 456666653 11146778888874 677788775 7789999999 9999999999864422 122223
Q ss_pred ccceEEEecCCCcccCC-CcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHH
Q 017726 190 WGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFE 268 (367)
Q Consensus 190 ~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~ 268 (367)
...|+++. .|.++|. ..+|.+.+++++.+.+....... .+..+. .++.+..++++..++|+.+++
T Consensus 645 v~PDIi~~--gKgLtgG~~Plaa~l~~~~I~~~f~~~~~~~----------~~~hg~--Ty~gnpl~cAaala~L~~~~~ 710 (817)
T PLN02974 645 CKPDIACY--AKLLTGGLVPLAATLATEEVFEAFRGPSKLD----------ALLHGH--SYTAHPMGCAAAAKALQWYKD 710 (817)
T ss_pred CCCCEEee--cccccCCCCccEEEEEcHHHHHhhccccccC----------CcccCC--CCCcCHHHHHHHHHHHHHHHc
Confidence 35788877 6888776 35899999999988774210000 011132 446777777888888999888
Q ss_pred hC-hHHHHHHHHHHHHHHHHHHH-Hc-CCccccCCCccCCCceEEEEcCCCC--------CHHHHHHHHHhhCCeEEccC
Q 017726 269 EG-LENVIERHRRLGKATRLAVE-AW-GLKNCTQKEEWFSDTVTAVIVPSHI--------NSSEIVRRAWQRYNLSLGLG 337 (367)
Q Consensus 269 ~g-~~~~~~~~~~~~~~l~~~L~-~~-g~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~L~~~~gv~v~~g 337 (367)
++ .+.+.++..++.+++.+.|. .+ ..+.+..-. -.+.+..+.+.++. -...+.+.+..++||.+++.
T Consensus 711 ~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VR--g~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~ 788 (817)
T PLN02974 711 PSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVV--SLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPL 788 (817)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEE--eeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEec
Confidence 75 44555666667777776663 33 333333211 13345555552211 12457777763559999762
Q ss_pred CCCCCCcEEEEeecCCCCHHH
Q 017726 338 LNKVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 338 ~~~~~~~~iRi~~~~~~~~~~ 358 (367)
++.+|+..-...++++
T Consensus 789 -----Gnvi~l~pP~~i~~e~ 804 (817)
T PLN02974 789 -----GNVVYLMCGPTTSPET 804 (817)
T ss_pred -----CCEEEEeCCCCCCHHH
Confidence 3678886545444443
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-10 Score=102.76 Aligned_cols=295 Identities=16% Similarity=0.073 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHHhcCCC--------CceEEecCChhHHHHHHHHcc-------CCC-----------CCeEEEEeCCc
Q 017726 41 PALTKTLLEDIKKIFKTTS--------GTPFLIPTTGTGAWESALTNT-------LSP-----------GDRIISFLIGQ 94 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~--------~~~v~~~~ggt~al~~~~~~~-------~~~-----------gd~vl~~~~~~ 94 (367)
.++..-.-++++++++++. +-.-++.++++++...++.+. ... ++-|.+.....
T Consensus 112 TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqa 191 (511)
T KOG0628|consen 112 TELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQA 191 (511)
T ss_pred HHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCcc
Confidence 3333445577788777762 112355577778887766431 111 22344444433
Q ss_pred chHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCC--CccEEEEEecCCCccccccHHHHHHHHHhcCCCcEE
Q 017726 95 FSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAH--TIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALF 172 (367)
Q Consensus 95 ~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~--~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~v 172 (367)
++. ..+.+...|++++.++.+.+..++.+.|+++|+++-+. -|-.++.+-..+.+-...++.++..+|++ +|+|+
T Consensus 192 hss-veka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~elg~Vc~~--~glWL 268 (511)
T KOG0628|consen 192 HSS-VEKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEELGPVCRE--EGLWL 268 (511)
T ss_pred cch-HHHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHHHhcchhhh--cCEEE
Confidence 433 34678888999999999988899999999999884211 12233333333333355679999999999 99999
Q ss_pred EEeeeeccCcee---eccc---cccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCcee---------echHHH
Q 017726 173 LVDGVSSICAID---FRMD---EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF---------FDWKDY 237 (367)
Q Consensus 173 i~D~~~~~~~~~---~~~~---~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 237 (367)
++|++|+..+.- ++.- -..+|.+.+.+|||+..-..+..++.++... -.........+ .|+..|
T Consensus 269 HVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~-~~~~~~vdp~yL~h~~~~~~~Dyrhw 347 (511)
T KOG0628|consen 269 HVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTK-LSRAFNVDPLYLKHAYQGSAPDYRHW 347 (511)
T ss_pred EeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCce-eeeeeecChHhhcchhhccCCCcccc
Confidence 999999854322 1110 1147999999999997666677777766520 01111111111 122222
Q ss_pred HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCC-
Q 017726 238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS- 315 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~- 315 (367)
..-+ ++ -..-+-++..++.+.-+++++.+++..++++.+.+.+.+- .|++..+ +--.+++|++..
T Consensus 348 qipl--~r-------RfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~----~~lgLvcFRlk~~ 414 (511)
T KOG0628|consen 348 QIPL--GR-------RFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNK----RILGLVCFRLKGD 414 (511)
T ss_pred cccc--cc-------chhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecc----cccceeEEeecCC
Confidence 1100 10 0111345666777777778888888899999988888775 6888776 455688999832
Q ss_pred CCCHHHHHHHHHhhCCeEEccCCCCCCCcE-EEEeecCCC
Q 017726 316 HINSSEIVRRAWQRYNLSLGLGLNKVAGKV-FRIGHLGHL 354 (367)
Q Consensus 316 ~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~-iRi~~~~~~ 354 (367)
+...+.|.+++....+|.+.+.. ..+.+ +|++.-...
T Consensus 415 N~~ne~Ll~~in~~g~i~l~~~~--l~gk~vlRf~V~s~~ 452 (511)
T KOG0628|consen 415 NEINEALLNRLNSSGRIHLVPAS--LHGKFVLRFAVCSPL 452 (511)
T ss_pred cHHHHHHHHHHHhcCcEEEEEee--ecceEEEEEEecCCC
Confidence 23456788989877677776543 23455 899865543
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-10 Score=100.58 Aligned_cols=248 Identities=17% Similarity=0.110 Sum_probs=157.9
Q ss_pred ChHHHHHHHccCCCC--CC-CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc---C---CC--CCeEE
Q 017726 20 IPDQVIRAMNRNNED--YR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT---L---SP--GDRII 88 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~---~---~~--gd~vl 88 (367)
..+++.+++.+.... |. ...+....-++.+.+.+.++-...+.|.|++|||+|++.++... . .+ ...+|
T Consensus 73 anpev~ral~~q~~k~~hs~~~~~t~eav~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~I 152 (433)
T KOG1401|consen 73 ANPEVARALAEQAKKLGHSSNGYFTLEAVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFI 152 (433)
T ss_pred CCHHHHHHHHHHHhhheeccCccccHHHHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEE
Confidence 377888888886543 22 22223335677888888887767778999999999999988531 1 11 12588
Q ss_pred EEeCCcchHHHHHHHHHhCCceEEEeCC---CC----CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----HH
Q 017726 89 SFLIGQFSLLWIDQQQRLNFNVDVVESD---WG----EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LS 157 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~----~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~ 157 (367)
....+|++.... ++...+..-...+.+ ++ ..-|..++++.++.+. ....+|++....--.|.... +.
T Consensus 153 af~nsyHG~tlg-als~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~-~~IaAVIvEPiqGaGG~~p~~peFl~ 230 (433)
T KOG1401|consen 153 AFENSYHGRTLG-ALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHK-GEIAAVIVEPIQGAGGIIPADPEFLI 230 (433)
T ss_pred EEecCcCCcchh-HHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCC-CceEEEEEecccCCCCcccCCHHHHH
Confidence 888888886432 222223222222211 11 1127899999999865 34678888877766676653 66
Q ss_pred HHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceee
Q 017726 158 KVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF 232 (367)
Q Consensus 158 ~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~ 232 (367)
.|+++|++ +++++|.||.+.....- ...-....|+.+. .|.++|...+|...++.++.+.+.+...
T Consensus 231 ~L~k~C~~--~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t~--aK~L~gGlPigA~~v~~kV~~~i~~~~~----- 301 (433)
T KOG1401|consen 231 GLRKECDD--NGVLLIFDEVQTGLGRLGYGWAQEYFGVTPDITTV--AKPLGGGLPIGATGVRDKVAEMISPGDH----- 301 (433)
T ss_pred HHHHHHhh--cCceEEeehhhhCccccchHHHHHHhCcCCcceee--hhhccCCceeEEEeehHHHHhhcCCCCc-----
Confidence 79999999 99999999998642221 1111234677665 6888777668999999999888876432
Q ss_pred chHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Q 017726 233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA 291 (367)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 291 (367)
+..|+ .++.+..++.+...+++++.+.+ ..++..+..+.|++.|.+
T Consensus 302 --------l~hg~--Tf~gnpLacsa~~~~l~~l~~~e---~~k~vs~~~k~L~~~l~e 347 (433)
T KOG1401|consen 302 --------LYHGG--TFSGNPLACSAGIKVLDELKDPE---TLKNVSKIGKELRKLLDE 347 (433)
T ss_pred --------cccCc--ccCCChhhhhHHHHHHHHHcCHH---HHHHHHHHHHHHHHHHHH
Confidence 11233 34566666666677777776653 334444455555555544
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.7e-11 Score=105.16 Aligned_cols=287 Identities=14% Similarity=0.096 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChh-HHHHHHHHccC--CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC-
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGT-GAWESALTNTL--SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW- 117 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt-~al~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~- 117 (367)
...+.+...+-+..|+......++++-+| .++.+++.++. ..++.|+.+..++.+-. ..++..|.+++.|+...
T Consensus 56 ~ltn~l~~d~~~~~G~~~~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~--kai~~AGl~~~vV~~~~~ 133 (389)
T PF05889_consen 56 KLTNSLVLDALRLAGLRSVKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCF--KAIERAGLEPVVVENVLE 133 (389)
T ss_dssp HHHHHHHHHHHHHTTHTTHCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHH--HHHHHTT-EEEEE-EEEE
T ss_pred HHHHHHHHHHHHHcCCccccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchH--HHHHhcCCeEEEeeccCC
Confidence 44555666666678887544456677777 44455555543 56788999988887643 56778899999998532
Q ss_pred -CC-CCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc-HHHHHHHHHhcCCCcEEEEeeeecc--------------
Q 017726 118 -GE-GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN-LSKVRKLLDEYRHPALFLVDGVSSI-------------- 180 (367)
Q Consensus 118 -~~-~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~-~~~i~~~~~~~~~~~~vi~D~~~~~-------------- 180 (367)
+. ..|.+.+++++++.+ +.+.+.++++.+-..|...| +++|.++|++ +|++.++..||+.
T Consensus 134 ~d~l~td~~~ie~~i~~~G-~~~iLcvltttscfapr~~D~i~~IakiC~~--~~IPhlvNnAYgvQ~~~~~~~i~~a~~ 210 (389)
T PF05889_consen 134 GDELITDLEAIEAKIEELG-ADNILCVLTTTSCFAPRLPDDIEEIAKICKE--YDIPHLVNNAYGVQSSKCMHLIQQAWR 210 (389)
T ss_dssp TTEEEEHHHHHHHHHHHHC-GGGEEEEEEESSTTTTB----HHHHHHHHHH--HT--EEEEGTTTTT-HHHHHHHHHHHH
T ss_pred CCeeeccHHHHHHHHHHhC-CCCeEEEEEecCccCCCCCccHHHHHHHHHH--cCCceEEccchhhhHHHHHHHHHHHHh
Confidence 22 347889999997754 45577789999888898888 9999999999 9999999999998
Q ss_pred -CceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHH
Q 017726 181 -CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGL 259 (367)
Q Consensus 181 -~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 259 (367)
|-++..+...+.||++-++||.+++ ..+..+..+..... |. .+.....-+
T Consensus 211 ~GRvda~vqS~dkNF~VPvGgai~As--------~~~~~i~~vs~~Yp----------------GR-----as~sp~ld~ 261 (389)
T PF05889_consen 211 VGRVDAFVQSTDKNFMVPVGGAIMAS--------FDPSGILAVSKEYP----------------GR-----ASASPSLDL 261 (389)
T ss_dssp HSTCSEEEEEHHHHHCEESSHEEEEE--------SSHHHHHHHHHTSH----------------SH-----BTSHHHHHH
T ss_pred cCCcceeeeecCCCEEecCCCcEEEe--------cCHHHHHHHHHHhh----------------hh-----hhcccchHH
Confidence 5555555544555555555554442 23455655543211 21 111111233
Q ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCCCceEEEEcCC--C---CCHHHHHHHHHhhC
Q 017726 260 RAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFSDTVTAVIVPS--H---INSSEIVRRAWQRY 330 (367)
Q Consensus 260 ~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~l~~~L~~~~ 330 (367)
--.+..+...|+........+...++.++|++. +-.+.. .+ +....+.+.++. . .+...|...|..+
T Consensus 262 ~itLl~LG~~g~~~ll~~r~~~f~~l~erl~~~aee~~e~ll~-~p--~N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R- 337 (389)
T PF05889_consen 262 FITLLSLGCTGYGALLKERKASFPYLKERLKKWAEEVGERLLE-TP--RNHISMAFTLDTLYEISQKDGTFLGSMLFKR- 337 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEBSS-ST--T-SSEEEEE-TTCCTCCSSHHHHHHHHHHHT-
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC-CC--CCCeeEEEECccchhhccchhhhHHHHHHhC-
Confidence 445555556667777777888888888888775 422222 12 233345566531 1 1235788888755
Q ss_pred CeEEcc----CCC-------CCCCcEEEE-eecC-CCCHHHHHHhhhhc
Q 017726 331 NLSLGL----GLN-------KVAGKVFRI-GHLG-HLNEVMFNFQLLFQ 366 (367)
Q Consensus 331 gv~v~~----g~~-------~~~~~~iRi-~~~~-~~~~~~~~~~~l~~ 366 (367)
+|.=.. +.. ..+-.++-+ +..| ..++.|.+.+.|++
T Consensus 338 ~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG~~~eevd~~v~rL~k 386 (389)
T PF05889_consen 338 GVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAIGMTREEVDYFVKRLDK 386 (389)
T ss_dssp TEESSEEEETSSCEEETTSS--SSSEEEEEE-TT--HHHHHHHHHHHHH
T ss_pred CcccceeeccCCCcccccCCCCchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 653211 111 123367888 4344 34455666666553
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.2e-10 Score=96.91 Aligned_cols=320 Identities=15% Similarity=0.103 Sum_probs=199.1
Q ss_pred CCCCcccccCCCCCChHHHHHHHccCCCC---CCC-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC
Q 017726 6 APGKNHLFVPGPVHIPDQVIRAMNRNNED---YRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL 81 (367)
Q Consensus 6 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~~---~~~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~ 81 (367)
..+.|++...+-..+-+++...+.+++.. +++ |+-.+....+++.|++++|.++ .+++. -|-.++..++.++.
T Consensus 99 ~aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G~E~--aivYs-~gF~ti~S~ipafs 175 (467)
T KOG1358|consen 99 FASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMGTED--AIVYS-YGFSTIESAIPAFS 175 (467)
T ss_pred ccchhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhCCcc--eeeec-cccchhhhcchhhh
Confidence 45677888888888999999999998654 222 3445667789999999999987 46774 45577777888999
Q ss_pred CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccC-----CCC----ccEEEEEecCCCccc
Q 017726 82 SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT-----AHT----IKAICIVHNETATGV 152 (367)
Q Consensus 82 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~-----~~~----~~lv~~~~~~n~tG~ 152 (367)
..||.+.+...-+|. .+...+...-.+.....+ |.+++++.+.+.+ .+| -+.|+....--++|.
T Consensus 176 KrGDIi~~de~~nfa--Iq~GlqlSRS~i~~Fkhn-----dm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~ 248 (467)
T KOG1358|consen 176 KRGDIIFVDEAVNFA--IQKGLQLSRSTISYFKHN-----DMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGD 248 (467)
T ss_pred ccCcEEEEehhhhHH--HHHHHhhhhheeEEecCC-----CHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCc
Confidence 999988776664444 333334444455555544 6788877776643 011 245666777788999
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccCcee---------eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhc
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAID---------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASK 223 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~---------~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~ 223 (367)
+.|+.+|.++..+ +..-|++|+..++|... +.+....+|++++|+.-.+++ .| |+.+++.-++ .-+
T Consensus 249 i~pl~~iv~lk~K--yk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas-~G-gFc~G~~~i~-~hQ 323 (467)
T KOG1358|consen 249 ICPLPEIVKLKNK--YKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALAS-GG-GFCAGKSFIA-DHQ 323 (467)
T ss_pred ccccHHHHHHHhh--heEEEEEecccccccccccCccccccCCCCccceeeeeecccccccc-cC-ceeecceeeE-eee
Confidence 9999999999999 99999999998876542 122222579999998776643 22 5555543321 111
Q ss_pred cCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc
Q 017726 224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE 302 (367)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 302 (367)
.. ....|. ++.-.|+... .+...++..+..+ .++.+..+.....+.+.|... ++.+.++
T Consensus 324 rL-Sg~~Y~-------------fSAslPp~la-~aa~~ai~i~~~~--p~~~~~L~~k~~~~H~~l~~~s~~~v~~~--- 383 (467)
T KOG1358|consen 324 RL-SGSGYC-------------FSASLPPYLA-GAAIKAILIEEWN--PEIVQPLRAKVAKFHAALSSNSGFIVSGS--- 383 (467)
T ss_pred ec-ccccee-------------eeccCchhhh-hhHHHHHHHHhhC--cchhhhhhccccccchhhhcCCceEEecC---
Confidence 11 111111 1122344433 3333355555544 236667777788888888886 6777665
Q ss_pred cCCCceEEEEcCCC-CC---H----HHHHHHHHhhCCeEEccC-----CCC-CCCcEEEEeecCCCCHHHHHHh
Q 017726 303 WFSDTVTAVIVPSH-IN---S----SEIVRRAWQRYNLSLGLG-----LNK-VAGKVFRIGHLGHLNEVMFNFQ 362 (367)
Q Consensus 303 ~~~~~~~~~~~~~~-~~---~----~~l~~~L~~~~gv~v~~g-----~~~-~~~~~iRi~~~~~~~~~~~~~~ 362 (367)
...+++.+.+.+. .+ . +++++....+ ++.+... ... .-...+||++....+++++...
T Consensus 384 -~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~-~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra 455 (467)
T KOG1358|consen 384 -PESPIIHLQLERSYGSREKEEKLLEEIVDKCIAE-GVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERA 455 (467)
T ss_pred -cCCceeeeeecccccchHHHHHHHHHHHHHHHhh-cceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHH
Confidence 2334555665321 11 1 1344444444 6666432 111 1234699998888887766554
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-09 Score=100.25 Aligned_cols=301 Identities=15% Similarity=0.121 Sum_probs=184.7
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHH---HHHHHccC-CCCC----eEEEEeCCcchHHHHHHHHHhCCce
Q 017726 39 AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAW---ESALTNTL-SPGD----RIISFLIGQFSLLWIDQQQRLNFNV 110 (367)
Q Consensus 39 ~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al---~~~~~~~~-~~gd----~vl~~~~~~~~~~~~~~~~~~g~~~ 110 (367)
++.+...++++.+.++.|.+.-. +-.++|..+= ..++++.. .+|+ ..+++...|..+.. .+...|.++
T Consensus 579 GY~~lf~~Le~~Lc~iTG~D~~s--~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPA--SA~Magmkv 654 (1001)
T KOG2040|consen 579 GYQQLFTELEKDLCEITGFDSFS--LQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPA--SAAMAGMKV 654 (1001)
T ss_pred hHHHHHHHHHHHhheeeccccee--ecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChh--hHHhcCCEE
Confidence 45677778888888888877521 3334443322 23455543 2332 45667776666553 256789999
Q ss_pred EEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc-cHHHHHHHHHhcCCCcEEEEeeeeccCcee-eccc
Q 017726 111 DVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN-NLSKVRKLLDEYRHPALFLVDGVSSICAID-FRMD 188 (367)
Q Consensus 111 ~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~-~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-~~~~ 188 (367)
+.|.++.++.+|..+|.++.+++. ++-.++.++.|+ ..|... .+++++++.|+ ||.-|..|++......- ....
T Consensus 655 vpV~~~~~G~id~~dLk~kaekh~-~~Laa~MvTYPS-T~GvfE~~i~d~cd~iHe--hGGQVYlDGANMNAqVGlc~pG 730 (1001)
T KOG2040|consen 655 VPVGCDANGNIDMVDLKAKAEKHK-DNLAALMVTYPS-THGVFEEGIDDICDIIHE--HGGQVYLDGANMNAQVGLCRPG 730 (1001)
T ss_pred EEeeccCCCCccHHHHHHHHHHhh-hhhheeEEeccc-ccccccccHHHHHHHHHh--cCCEEEecCCCccceecccCCc
Confidence 999999999999999999998875 556677777775 467665 59999999999 99999999886432221 1334
Q ss_pred cccceEEEecCCCcccCC-----CcceeeeeCHHHHHHhccCCCCce-eechHHHHHHhhcCCccCCCCcHHHHHHHHHH
Q 017726 189 EWGIDVALTGSQKALSLP-----TGMGIVCASPKALEASKTAKSVRV-FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAA 262 (367)
Q Consensus 189 ~~~~d~~~~s~~K~~~g~-----~g~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~a 262 (367)
..|.|+.....||+|+-| +|+|-+.+++.+...+.....-+. ......-..-..+ .||... ..+--.++.
T Consensus 731 d~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsa---aP~Gsa-~ILpISwaY 806 (1001)
T KOG2040|consen 731 DIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSA---APWGSA-LILPISWAY 806 (1001)
T ss_pred cccccceeecccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceec---cCCCcc-eeehhHHHH
Confidence 568999999999999644 556777777766655543322110 0000000000000 122111 111234667
Q ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEc-----CCCCCHHHHHHHHHhhCCeEEcc
Q 017726 263 LDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV-----PSHINSSEIVRRAWQRYNLSLGL 336 (367)
Q Consensus 263 l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~L~~~~gv~v~~ 336 (367)
++.+...|++..-+...-|++|+.++|+.. .+-...... ....-+.+++ ..++++.+++++|. .+|+..-.
T Consensus 807 ikmMG~~GL~~as~~AiLNaNYMakRLe~hYkil~~~~~~--~vaHEFIlD~r~fK~~agieavDvAKRL~-DYgFHaPT 883 (1001)
T KOG2040|consen 807 IKMMGSGGLKDASKIAILNANYMAKRLESHYKILFRGENG--LVAHEFILDLRPFKKTAGIEAVDVAKRLM-DYGFHAPT 883 (1001)
T ss_pred HHHhcccccchhhHHHhhhhHHHHHHHhhccceeEecCCc--ceeeeeeeechhhccccCCcHHHHHHHHH-hccCCCCc
Confidence 788888889988888999999999999996 332222211 1111222332 24578889999996 55764332
Q ss_pred CCCCCCCcEEEEeecCCCC
Q 017726 337 GLNKVAGKVFRIGHLGHLN 355 (367)
Q Consensus 337 g~~~~~~~~iRi~~~~~~~ 355 (367)
-.+|. .+.+=|-+.-.++
T Consensus 884 mswPV-~gtLMIEPTESE~ 901 (1001)
T KOG2040|consen 884 MSWPV-AGTLMIEPTESED 901 (1001)
T ss_pred ccccc-CCceEeccCcccc
Confidence 22332 3445554433333
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-08 Score=86.97 Aligned_cols=290 Identities=16% Similarity=0.131 Sum_probs=174.8
Q ss_pred CCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC-----CCCCeEEEE
Q 017726 16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-----SPGDRIISF 90 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~-----~~gd~vl~~ 90 (367)
|...+....+.+|..--..+.+. .-+..+.+.+++++|.+. ++.|.-|-+|=++++..++ .||.+.+++
T Consensus 56 GTgams~~qwaamm~GDEAYags---rs~~~L~~avkdifGfq~---~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~ 129 (471)
T COG3033 56 GTGAMTDKQWAAMMRGDEAYAGS---RSYYALADAVKDIFGFQY---TIPTHQGRGAENILIPILIKKGEQEPGSKMVAF 129 (471)
T ss_pred CcccccHHHHHHHhccchhhccc---ccHHHHHHHHHHhcCcee---eeeccCCccHHHHHHHHHhhhccccCCcccccc
Confidence 56667777777777643332211 223467778888998643 5666666666665554443 466666777
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCCC----------CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcc-ccc---cH
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESDW----------GEGAKLDVLASKLAADTAHTIKAICIVHNETATG-VTN---NL 156 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~----------~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG-~~~---~~ 156 (367)
.+.||...- ...+..|..++.++.++ .+.+|++.|++.|++-+.+++-.|+++-.+|..| ... ++
T Consensus 130 sN~~FdTTr-~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~ 208 (471)
T COG3033 130 SNYHFDTTR-GHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANM 208 (471)
T ss_pred ccceecchh-HHHHhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhH
Confidence 777776532 22355677777666543 2568999999999996656666776665555555 333 57
Q ss_pred HHHHHHHHhcCCCcEEEEeeeec----cC-------ceeecccc------ccceEEEecCCCcccCCCcceeeeeCHH--
Q 017726 157 SKVRKLLDEYRHPALFLVDGVSS----IC-------AIDFRMDE------WGIDVALTGSQKALSLPTGMGIVCASPK-- 217 (367)
Q Consensus 157 ~~i~~~~~~~~~~~~vi~D~~~~----~~-------~~~~~~~~------~~~d~~~~s~~K~~~g~~g~g~~~~~~~-- 217 (367)
+++.++|++ +++.++.|++-- .+ -..-...+ ..+|-.+.|.-|--...-| |+++.+++
T Consensus 209 r~v~~ia~k--y~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvnmG-Gfl~~~D~~~ 285 (471)
T COG3033 209 KAVYEIAKK--YDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVNMG-GFLCFKDDSF 285 (471)
T ss_pred HHHHHHHHH--cCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeeccccceeccc-cEEEecCccH
Confidence 889999999 999999997621 10 00111110 1368888888776444454 89998877
Q ss_pred --HHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCc
Q 017726 218 --ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLK 295 (367)
Q Consensus 218 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~ 295 (367)
+...+...... +-|.-+.+...--.+.++...|....+. ...++..+-.++|.+.|.+.|++
T Consensus 286 fDvy~~~~~~~V~-------------~eG~~tYGgl~GrdmealAvGL~e~~~~---~yl~~Rv~Qv~YL~~~l~~~GVp 349 (471)
T COG3033 286 FDVYEECRTLVVV-------------QEGFPTYGGLAGRDMEALAVGLREGVNF---DYLAHRVAQVQYLADGLEEAGVP 349 (471)
T ss_pred HHHHHHHHhheEe-------------eccccccCcccchhHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHhcCCe
Confidence 33333322110 0111112234444455566555544333 22334455567999999999999
Q ss_pred cccCCCccCCCceEEEEcCC---C-----CCHHHHHHHHHhhCCeEEc
Q 017726 296 NCTQKEEWFSDTVTAVIVPS---H-----INSSEIVRRAWQRYNLSLG 335 (367)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~---~-----~~~~~l~~~L~~~~gv~v~ 335 (367)
++.| .+++-++++..+ . .++..|.-.|..+.||-..
T Consensus 350 i~~p----aGGHavfvda~~~lphip~eqFpaqala~ely~e~GiRav 393 (471)
T COG3033 350 IVQP----AGGHAVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAV 393 (471)
T ss_pred eEec----CCCceEEeehhhhcCCCChhhCcHHHHHHHHHHHhCeeee
Confidence 8887 445455555411 1 3455677777778888664
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.03 E-value=7e-09 Score=89.28 Aligned_cols=280 Identities=14% Similarity=0.076 Sum_probs=136.3
Q ss_pred HHHHHHHHHHH---hcC--CCCceEEecCChhHHHHHHHHccCC------CCCeEEEEeCCcchHHHHHHHHHhCCceEE
Q 017726 44 TKTLLEDIKKI---FKT--TSGTPFLIPTTGTGAWESALTNTLS------PGDRIISFLIGQFSLLWIDQQQRLNFNVDV 112 (367)
Q Consensus 44 ~~~~~~~la~~---~~~--~~~~~v~~~~ggt~al~~~~~~~~~------~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~ 112 (367)
..++++.|+++ .|- .++.-|++.+|+|+.++.++.++.. +.-+|+...| |++.. ......+.-....
T Consensus 45 s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aP-YY~~Y-~~qt~~f~s~~y~ 122 (363)
T PF04864_consen 45 SPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAP-YYSSY-PEQTDFFDSRLYK 122 (363)
T ss_dssp -HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS---CHH-HHHCCCT-BTTEE
T ss_pred cHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCC-Cccch-HHHHHhccccCcc
Confidence 33455555444 442 2444589989999999998877532 1225666666 55543 2222323222222
Q ss_pred EeCCCCCCCCHHHHHHHHhccCCCCccEE-EEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCce-eeccccc
Q 017726 113 VESDWGEGAKLDVLASKLAADTAHTIKAI-CIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI-DFRMDEW 190 (367)
Q Consensus 113 v~~~~~~~~d~e~l~~~i~~~~~~~~~lv-~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~-~~~~~~~ 190 (367)
..-+ ..... ++. .....| ++++||||.|.+-. .+++. .+..+|.|-+|...+. ++.- ..
T Consensus 123 w~Gd------a~~~~---~~~--~~~~~IElVTSPNNPDG~lr~-----~V~~g--~~~k~I~D~AYYWPhyTpI~~-~a 183 (363)
T PF04864_consen 123 WAGD------ASNFK---NSD--NPSPYIELVTSPNNPDGQLRE-----AVLNG--SSGKVIHDLAYYWPHYTPITA-PA 183 (363)
T ss_dssp EEEE------CCCGT---T-S---CCGEEEEEESS-TTT-----------SSTT--TEEEEEEE-TT-STTTS---S--B
T ss_pred cccc------HHhhc---cCC--CCCCeEEEEeCCCCCcccccc-----hhcCC--CCcceeeeeeeecccccccCC-CC
Confidence 2222 11111 111 122455 99999999997631 12244 6778899999887664 2222 23
Q ss_pred cceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHH
Q 017726 191 GIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFE 268 (367)
Q Consensus 191 ~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~ 268 (367)
+-|+++++.||. .|..| +|+.+++++.+.+-... .++.++ .+.+-- ++..+++++..
T Consensus 184 D~DiMLFT~SK~-TGHAGSR~GWAlVKD~~Va~kM~~--------------y~~lnT--iGvS~d----sQLRa~kiLk~ 242 (363)
T PF04864_consen 184 DHDIMLFTLSKL-TGHAGSRFGWALVKDEEVAKKMTK--------------YMELNT--IGVSRD----SQLRALKILKV 242 (363)
T ss_dssp --SEEEEEHHHH-CS-GGG-EEEEEES-HHHHHHHHH--------------HHHHHC--SS--HH----HHHHHHHHHHH
T ss_pred CCceEEEEEecc-cCccccccceeeecCHHHHHHHHH--------------HHHHhc--ccCcHH----HHHHHHHHHHH
Confidence 458999999994 57776 59999888775443321 111111 111111 12223333321
Q ss_pred ----h----C----hHHHHHHHHHHHHHHHHHHHHcC-Ccc--ccCC-------CccCCCceEEEEcCCCCCHHHHHHHH
Q 017726 269 ----E----G----LENVIERHRRLGKATRLAVEAWG-LKN--CTQK-------EEWFSDTVTAVIVPSHINSSEIVRRA 326 (367)
Q Consensus 269 ----~----g----~~~~~~~~~~~~~~l~~~L~~~g-~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~L 326 (367)
. | .+--.+...++-..|++.+.+.+ |.+ +.++ --..++.+.|++++.. ..++..+.|
T Consensus 243 v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~e-ed~DC~~~l 321 (363)
T PF04864_consen 243 VLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCERE-EDEDCYAVL 321 (363)
T ss_dssp HHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSC-GGSSHHHHH
T ss_pred HHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCc-ccccHHHHH
Confidence 0 0 11112223333344444444432 221 1110 0012567889999533 335566666
Q ss_pred HhhCCeEEccCCCCC-CCcEEEEeecCCCCHHHHHHhhhhcC
Q 017726 327 WQRYNLSLGLGLNKV-AGKVFRIGHLGHLNEVMFNFQLLFQL 367 (367)
Q Consensus 327 ~~~~gv~v~~g~~~~-~~~~iRi~~~~~~~~~~~~~~~l~~~ 367 (367)
+ ++||.-+.|.... ...++|+|+....++.|++.+.|..+
T Consensus 322 ~-~~~I~tr~G~~fga~~ryVRlSml~~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 322 R-EAKIITRSGVLFGADSRYVRLSMLKRDDDFDQLLERLSKL 362 (363)
T ss_dssp H-CTTEEEEEGGGGTS-TTEEEEESSS-HHHHHHHHHHHHCC
T ss_pred H-hCCcccCCCCccCCCCCeEEEeccCCHHHHHHHHHHHHhh
Confidence 4 6699999986543 45789999988888888888877653
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.2e-06 Score=76.11 Aligned_cols=307 Identities=15% Similarity=0.151 Sum_probs=171.4
Q ss_pred CChHHHHHHHccC-CC-CCC---CCcH----HHHHHHHHHHHHHHhcCCCCceEEecCChh---HHHHHHHHccCCCCCe
Q 017726 19 HIPDQVIRAMNRN-NE-DYR---SPAV----PALTKTLLEDIKKIFKTTSGTPFLIPTTGT---GAWESALTNTLSPGDR 86 (367)
Q Consensus 19 ~~~~~v~~a~~~~-~~-~~~---~~~~----~~~~~~~~~~la~~~~~~~~~~v~~~~ggt---~al~~~~~~~~~~gd~ 86 (367)
.+|+.++.-+.+. .+ ... .++. .+-.-.....++++.|++-...-++ .-|| +|+.++.+ ..++.+
T Consensus 131 ~vP~~I~RNilenp~W~TqYTPYQ~EIsQGRLEsllNyQTmi~dlTGL~~aNASLL-DEgTAaaEAm~l~~~--~~krkk 207 (1001)
T KOG2040|consen 131 HVPAVILRNILENPGWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMANASLL-DEGTAAAEAMALCNR--INKRKK 207 (1001)
T ss_pred cCcHHHHHHhhhCCcceeccCCCchhhhhhhHHHHhhhHHhhhhccCCcccchhhh-ccchhHHHHHHHHHh--hcccce
Confidence 4566666666652 11 111 1122 2334456788899999884332233 3344 44443333 345556
Q ss_pred EEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHH
Q 017726 87 IISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLD 164 (367)
Q Consensus 87 vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~ 164 (367)
.++...-|+... ....++.+|+++... |+++...-. +.+..+++..| +..|.+.|..++.+.++
T Consensus 208 ~vvd~~~hpqtlsV~~TRa~~~~i~v~~~--------~~~~~~~s~-----~~v~gvlvQYP-~t~G~i~d~~el~~~a~ 273 (1001)
T KOG2040|consen 208 FVVDSNCHPQTLSVVKTRAKGFGIKVVVS--------DIKEADYSS-----KDVSGVLVQYP-DTEGSVLDFDELVELAH 273 (1001)
T ss_pred EEecCCCCcchhhhhhccccccceeEEec--------CHHHhhccc-----cceeEEEEEcC-CCCCcccCHHHHHHHhh
Confidence 666555555543 222233344443322 222222111 23456666655 56799999999999999
Q ss_pred hcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCc-----ceeeeeCHHHHHHhccCCCCceeec------
Q 017726 165 EYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTG-----MGIVCASPKALEASKTAKSVRVFFD------ 233 (367)
Q Consensus 165 ~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g-----~g~~~~~~~~~~~~~~~~~~~~~~~------ 233 (367)
. .+.++++-.---..++-=+..+.|+||+++|++.+ +-|.| .|++.++.++.+.+..... +...|
T Consensus 274 ~--~~s~vv~atDLLaLtiLrpPgefGaDIavGSsQRF-GVPlGYGGPHAaFfAv~~~l~R~mPGRii-GvtkD~~gk~a 349 (1001)
T KOG2040|consen 274 A--NGSLVVMATDLLALTILRPPGEFGADIAVGSSQRF-GVPLGYGGPHAAFFAVSESLVRMMPGRII-GVTKDALGKEA 349 (1001)
T ss_pred c--cCceEEEeehhhHHHccCChhhcCceeeecccccc-CccccCCCchHHHHHHHHHHHhhCCCceE-eeeecccccHH
Confidence 9 88776653221111222244567999999998874 33433 3788888888776655432 22211
Q ss_pred ----hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH-----HhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccC
Q 017726 234 ----WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-----EEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWF 304 (367)
Q Consensus 234 ----~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~-----~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 304 (367)
++...+..+.. --|+|+....|+.+-+..+- .+|++++.+++......|...|+..|.+++... ++
T Consensus 350 ~RLALQTREQHIrRD---KATSNICTAQALLANmaAmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~aghel~~k~--fF 424 (1001)
T KOG2040|consen 350 YRLALQTREQHIRRD---KATSNICTAQALLANMAAMYAIYHGPHGLKEIARRVHNLTLILAEGLKNAGHELQHKP--FF 424 (1001)
T ss_pred HHHHHHHHHHHhhhh---ccchhhhHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhhcchhhcccc--cc
Confidence 11111211111 22466655445544444332 356999999999999999999999887766531 22
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 305 SDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 305 ~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
.. +-+++. -+.+++.++..++ .|-++- ..++.+-+++.-+.+..|++
T Consensus 425 DT--LkI~~~--~s~~~~l~rA~~~-~iNlr~----~ed~tigvslDETv~~~Dvd 471 (1001)
T KOG2040|consen 425 DT--LKIRCG--CSAEEVLDRAAKR-QINLRL----VEDGTIGVSLDETVTEKDVD 471 (1001)
T ss_pred ce--EEEEec--CcHHHHHHHHHhh-cCceEE----eecCceEEeecccccHHHHH
Confidence 22 334552 2677888777655 555442 23456888876666666554
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4e-05 Score=64.85 Aligned_cols=301 Identities=12% Similarity=0.068 Sum_probs=163.4
Q ss_pred CChHHHHHHHccCCCC-CCCCc--HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHc--cCCCCCeEEEEeCC
Q 017726 19 HIPDQVIRAMNRNNED-YRSPA--VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIG 93 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~--~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~--~~~~gd~vl~~~~~ 93 (367)
...++|.++...+... ..... ..++.+-.+...+.+=+ -+...|++||++|+.++++. -+.+...||+.+..
T Consensus 61 hchp~VV~A~~kQmat~~tN~RFlhd~lv~cA~~l~stlPe---Lsvc~F~NSGSEANDLALRLAR~ftkhqDvItldHA 137 (452)
T KOG1403|consen 61 HCHPEVVRAGAKQMATISTNNRFLHDELVQCARTLTSTLPE---LSVCFFVNSGSEANDLALRLARNFTKHQDVITLDHA 137 (452)
T ss_pred cCCHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHhhcCCC---ceEEEEecCCchhhHHHHHHHHhhcccCceEEEech
Confidence 3455666666654332 11111 12334444444443333 34479999999999998864 23455568888887
Q ss_pred cchHHHHHHHHH--------hC-Cc---eEEEeCCC--CCCC--------C-----HHHHHHHHhccCC--CCccEEEEE
Q 017726 94 QFSLLWIDQQQR--------LN-FN---VDVVESDW--GEGA--------K-----LDVLASKLAADTA--HTIKAICIV 144 (367)
Q Consensus 94 ~~~~~~~~~~~~--------~g-~~---~~~v~~~~--~~~~--------d-----~e~l~~~i~~~~~--~~~~lv~~~ 144 (367)
|+++.. ...+. .+ .+ +...|+++ .+.. | .+.+++.+.+.-. .++.+++..
T Consensus 138 YHGHl~-s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAE 216 (452)
T KOG1403|consen 138 YHGHLQ-SVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAE 216 (452)
T ss_pred hcccee-eeeeccceeccCCCCcCCCceeEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHH
Confidence 877631 11111 11 11 12223322 1111 1 2456666654211 345566777
Q ss_pred ecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce------eeccccccceEEEecCCCcccCCCcceeeee
Q 017726 145 HNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI------DFRMDEWGIDVALTGSQKALSLPTGMGIVCA 214 (367)
Q Consensus 145 ~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~------~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~ 214 (367)
+.++--|.+.| .+++.+..+. +|.+.|.|+.+..+.. .+...+.-.||++. .|-++-....+.++.
T Consensus 217 slQSCGGQiiPPagYFq~Va~~Vr~--aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtm--gKpmGNGhPVa~Vat 292 (452)
T KOG1403|consen 217 SLQSCGGQIIPPAGYFQAVADAVRS--AGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVTM--GKPMGNGHPVAAVAT 292 (452)
T ss_pred HHHhcCCcccCchhHHHHHHHHHhc--CCCeEEeehhhhcccccchhhhhhhhhccccchhee--cccCCCCCeeeEEec
Confidence 77788888876 4567777777 9999999999854332 11111112566655 566644444789999
Q ss_pred CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--
Q 017726 215 SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-- 292 (367)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-- 292 (367)
.+++.+.+...-. .|+ ++ .+..++ ..+...+.++..+++ ++..+.++..++|...|+++
T Consensus 293 tkeIA~Af~atgv--~YF-----------NT--yGGnPV-sCAv~laVm~v~e~E---~Lq~ha~~vG~~L~~lL~~~k~ 353 (452)
T KOG1403|consen 293 TKEIAQAFHATGV--EYF-----------NT--YGGNPV-SCAVGLAVMRVCEDE---NLQEHAQQVGEKLEVLLRRLKQ 353 (452)
T ss_pred cHHHHHHhccccc--eeh-----------hc--cCCCch-hHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhh
Confidence 9999887764321 122 11 112333 233334455555554 45557777888888888775
Q ss_pred CCccccCCCccCCCceEEEEcCCC----C----CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEee
Q 017726 293 GLKNCTQKEEWFSDTVTAVIVPSH----I----NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGH 350 (367)
Q Consensus 293 g~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~ 350 (367)
..++++.-. -.+.++-+.+-++ . .+..+.-+|++.++|.+.. .+| ..+.+.|-+
T Consensus 354 kh~~IGDvR--GvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsa-DGP-h~NilKiKP 415 (452)
T KOG1403|consen 354 KHECIGDVR--GVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSA-DGP-HRNILKIKP 415 (452)
T ss_pred hccceeccc--cceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEec-CCC-CCceeecCC
Confidence 566666421 1222333333111 1 2334778888888888763 111 234566643
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00025 Score=60.46 Aligned_cols=285 Identities=14% Similarity=0.112 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHH-hcCCC----CceE--EecCChhHHHHHHHHcc--CCCCCeEEEEeCCcchHHHHHHHHHhCC-ceEE
Q 017726 43 LTKTLLEDIKKI-FKTTS----GTPF--LIPTTGTGAWESALTNT--LSPGDRIISFLIGQFSLLWIDQQQRLNF-NVDV 112 (367)
Q Consensus 43 ~~~~~~~~la~~-~~~~~----~~~v--~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~g~-~~~~ 112 (367)
..+.+++..+++ +|.+. ++++ +-+-|||+|+.++..-+ +-....|.+++|.+..+. .+.+..|+ .+..
T Consensus 75 Gl~~F~~~A~el~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~--~if~~aGf~tv~~ 152 (410)
T KOG1412|consen 75 GLPTFTKAATELLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHH--AIFEKAGFTTVAT 152 (410)
T ss_pred CchhhhhhhHHHhcCCCchhhhhccccceeeccccchhhhhHHHHHHhcccceeEecCCchhHHH--HHHHHcCCceeee
Confidence 345566555554 44431 2222 45568899998765422 223556888888655543 34566773 3333
Q ss_pred EeCC--CCCCCCHHHHHHHHhccCCCCccEEEEEe-cCCCccccccHHH---HHHHHHhcCCCcEEEEeeeeccC-ceee
Q 017726 113 VESD--WGEGAKLDVLASKLAADTAHTIKAICIVH-NETATGVTNNLSK---VRKLLDEYRHPALFLVDGVSSIC-AIDF 185 (367)
Q Consensus 113 v~~~--~~~~~d~e~l~~~i~~~~~~~~~lv~~~~-~~n~tG~~~~~~~---i~~~~~~~~~~~~vi~D~~~~~~-~~~~ 185 (367)
.+.= +...+|++.+...|+..+ +. .++++.. .+||||.=..-+. |.+..++ .+...+.|-+|..+ +-+.
T Consensus 153 Y~yWd~~~k~~d~e~~Lsdl~~AP-e~-si~iLhaCAhNPTGmDPT~EQW~qia~vik~--k~lf~fFDiAYQGfASGD~ 228 (410)
T KOG1412|consen 153 YPYWDAENKCVDLEGFLSDLESAP-EG-SIIILHACAHNPTGMDPTREQWKQIADVIKS--KNLFPFFDIAYQGFASGDL 228 (410)
T ss_pred eeeecCCCceecHHHHHHHHhhCC-CC-cEEeeeccccCCCCCCCCHHHHHHHHHHHHh--cCceeeeehhhcccccCCc
Confidence 3331 234689999998888654 22 3334443 4899996655555 4455555 88999999886432 2222
Q ss_pred cccc--------ccc-eEEEecCCCcccCCCc--c---eeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCC
Q 017726 186 RMDE--------WGI-DVALTGSQKALSLPTG--M---GIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTP 251 (367)
Q Consensus 186 ~~~~--------~~~-d~~~~s~~K~~~g~~g--~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (367)
+-+. .+. -|++-|+.|-|+ ..+ + -++.-++..+..+..... ...+ .+ +. .|
T Consensus 229 ~~DawAiR~fV~~g~e~fv~QSFaKNfG-lYneRvGnltvv~~n~a~i~~v~SQl~---------lviR---~~-~S-NP 293 (410)
T KOG1412|consen 229 DADAWAIRYFVEQGFELFVCQSFAKNFG-LYNERVGNLTVVVNNPAVIAGVKSQLT---------LVIR---SN-WS-NP 293 (410)
T ss_pred cccHHHHHHHHhcCCeEEEEhhhhhhcc-cccccccceEEEecChhHHHHHHHHHH---------HHHh---hc-cC-CC
Confidence 2221 133 366779999883 422 3 455556665555442210 0011 11 11 23
Q ss_pred cHHHHHHHHHHHH---HHHHh--ChHHHHHHHHHHHHHHHHHHHHcC----CccccCCCccCCCceEEEEcCCCCCHHHH
Q 017726 252 SIQLLYGLRAALD---LIFEE--GLENVIERHRRLGKATRLAVEAWG----LKNCTQKEEWFSDTVTAVIVPSHINSSEI 322 (367)
Q Consensus 252 ~~~~~~al~~al~---~~~~~--g~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (367)
+..+.--....|. ..+++ .++.+..|+.+-+..|++.|.+++ +.-+.. ...++++ .|.++..
T Consensus 294 PAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~L~aL~TPGtWDHI~~-----QiGMFSy---TGLtp~q- 364 (410)
T KOG1412|consen 294 PAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDHLVALKTPGTWDHITQ-----QIGMFSY---TGLTPAQ- 364 (410)
T ss_pred cchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHh-----hccceee---cCCCHHH-
Confidence 3322111221221 11222 267778888888888888888874 222221 2224444 3566544
Q ss_pred HHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHhhhh
Q 017726 323 VRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQLLF 365 (367)
Q Consensus 323 ~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 365 (367)
+++|.++|.|++.+ .+ ||++.| .....|-..++|+
T Consensus 365 V~~li~~h~vyLl~------~G--RInisGLN~~NveyVAkAId 400 (410)
T KOG1412|consen 365 VDHLIENHKVYLLS------DG--RINISGLNMKNVEYVAKAID 400 (410)
T ss_pred HHHHHHhceEEEec------CC--cEeeeccccccHHHHHHHHH
Confidence 47788888888753 23 444445 3345566665554
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.7e-05 Score=64.80 Aligned_cols=242 Identities=17% Similarity=0.116 Sum_probs=136.7
Q ss_pred ecCChhHHHHHHHH--ccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhccCCCCccE
Q 017726 65 IPTTGTGAWESALT--NTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESD--WGEGAKLDVLASKLAADTAHTIKA 140 (367)
Q Consensus 65 ~~~ggt~al~~~~~--~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~e~l~~~i~~~~~~~~~l 140 (367)
-+-|||+|+..... +..-++..|.+++|.+ ++. ..+....|+.+.....- ....+|.+.+.+.+.+-+ +..-+
T Consensus 125 Q~lSGTGaLriga~Fl~~f~~~~~I~ip~PTW-gNh-~~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p-~gs~i 201 (427)
T KOG1411|consen 125 QTLSGTGALRVGAEFLARFYPSRDIYIPDPTW-GNH-KNIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAP-EGSII 201 (427)
T ss_pred EeccCcchhhHHHHHHHhhccccceeecCCcc-ccc-CccccccCcceeeeeeccccccccchHHHHHHHhcCC-CCcEE
Confidence 34478888876443 3345788889898854 442 13345677777665543 345688888777777654 33334
Q ss_pred EEEEecCCCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccCc-eeeccc--------cccce-EEEecCCCcccCCC
Q 017726 141 ICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICA-IDFRMD--------EWGID-VALTGSQKALSLPT 207 (367)
Q Consensus 141 v~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~-~~~~~~--------~~~~d-~~~~s~~K~~~g~~ 207 (367)
++-.-.|||||+=.. .++|.++.++ .+.+-+.|.+|..++ -.++-+ +.+.+ ++.-|..|-| |..
T Consensus 202 lLhaCaHNPTGvDPt~eqw~ki~~~~~~--k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNM-GLY 278 (427)
T KOG1411|consen 202 LLHACAHNPTGVDPTKEQWEKISDLIKE--KNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNM-GLY 278 (427)
T ss_pred EeehhhcCCCCCCccHHHHHHHHHHhhh--ccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhc-chh
Confidence 444457899996554 4556777777 889999998875332 222211 11233 5566888988 454
Q ss_pred c-----ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHH---HHHHHh--ChHHHHHH
Q 017726 208 G-----MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAAL---DLIFEE--GLENVIER 277 (367)
Q Consensus 208 g-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al---~~~~~~--g~~~~~~~ 277 (367)
| +.+++-+.+...++.... +.+-... ..+||+.+......-+ ++..+| .++.+..+
T Consensus 279 gERvGa~svvc~~ad~A~rV~SQl------------k~liRpm--YSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadR 344 (427)
T KOG1411|consen 279 GERVGALSVVCKDADEAKRVESQL------------KILIRPM--YSNPPLHGARIVATILSDPDLKNQWLGEVKGMADR 344 (427)
T ss_pred hhccceeEEEecCHHHHHHHHHHH------------HHHhccc--ccCCCccchhhhhhccCChHHHHHHHHHHHHHHHh
Confidence 3 356676777666554321 0000010 1123332111111111 111122 16677888
Q ss_pred HHHHHHHHHHHHHHcCCcc----ccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEc
Q 017726 278 HRRLGKATRLAVEAWGLKN----CTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLG 335 (367)
Q Consensus 278 ~~~~~~~l~~~L~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~ 335 (367)
+...+..|++.|++.|-.. +.. +- .+++|. ++++ +..+.|.+++-|++.
T Consensus 345 i~~mR~~L~d~L~~~gs~~~W~hI~~----QI-GMF~fT---gl~p-eQv~~l~ke~~iYmT 397 (427)
T KOG1411|consen 345 IISMRQQLFDALEKEGSPGNWSHITK----QI-GMFCFT---GLNP-EQVDWLTKEYHIYLT 397 (427)
T ss_pred hhhhHHHHhHHhhcCCCCccHHHHHH----hh-heeeec---CCCH-HHHHHHHhhheeeec
Confidence 8889999999998875322 222 22 245553 4555 455778888777664
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0015 Score=56.92 Aligned_cols=207 Identities=16% Similarity=0.149 Sum_probs=114.6
Q ss_pred HHHHHHHHhccCC--CCccEEEEEecCCCccccc--c--HHHHHHHHHhcCCCcEEEEeeeeccCcee--------eccc
Q 017726 123 LDVLASKLAADTA--HTIKAICIVHNETATGVTN--N--LSKVRKLLDEYRHPALFLVDGVSSICAID--------FRMD 188 (367)
Q Consensus 123 ~e~l~~~i~~~~~--~~~~lv~~~~~~n~tG~~~--~--~~~i~~~~~~~~~~~~vi~D~~~~~~~~~--------~~~~ 188 (367)
++++|++|.+... ..+.++++...++--|.=. | +..+++++++ |++.+|+|+.+..+... .++.
T Consensus 255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~K--h~v~fivDEVQTGgGaTGk~WaHehw~l~ 332 (484)
T KOG1405|consen 255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKK--HGVAFIVDEVQTGGGATGKFWAHEHWNLD 332 (484)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHh--cCeEEEeeeeecCCCccCceeeehhcCCC
Confidence 5678888876421 1245666666666666433 2 7889999999 99999999998754321 1222
Q ss_pred cccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHH
Q 017726 189 EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFE 268 (367)
Q Consensus 189 ~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~ 268 (367)
...|++++| |.|. .| |+ +-.+++... .+++ .| + .|.....-++-+...++.+.+
T Consensus 333 -~PpD~vTFS--KK~q--~g-Gf-fh~~~frpn-~pYr-------------if--N---TWmGdP~k~lll~~vv~~I~~ 386 (484)
T KOG1405|consen 333 -SPPDVVTFS--KKFQ--TG-GF-FHDEEFRPN-EPYR-------------IF--N---TWMGDPSKNLLLEEVVQEIKR 386 (484)
T ss_pred -CCccceehh--hhhh--cC-cc-ccCcccCCC-chHH-------------Hh--h---hhcCChHHHHHHHHHHHHHhH
Confidence 247888875 4452 11 32 222222110 0000 00 1 122223334566777777777
Q ss_pred hChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEE
Q 017726 269 EGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVF 346 (367)
Q Consensus 269 ~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~i 346 (367)
++ +.+......+.|..+|.++ .++-....-- -.+.++.+++|++.--+.++..++ ..|+.+.. .+ ...+
T Consensus 387 ~~---Ll~n~~~vG~~l~~gL~~Lq~~~p~~~~~~R-GrGTF~a~d~ps~~~Rdk~i~~~~-~nGv~~GG-Cg---~~si 457 (484)
T KOG1405|consen 387 ED---LLNNVAHVGKALLKGLLELQAKYPGKINNLR-GRGTFIAWDCPSGSIRDKLILIAR-LNGVNLGG-CG---DKSI 457 (484)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHhCchhhhccc-ccceEEEEeCCChHHHHHHHHHHH-HcCceecc-cc---ccee
Confidence 64 3446667778888887765 1111111111 145578888987655567777775 45887653 22 1235
Q ss_pred EEeecC--CCCHHHHHHhhhhc
Q 017726 347 RIGHLG--HLNEVMFNFQLLFQ 366 (367)
Q Consensus 347 Ri~~~~--~~~~~~~~~~~l~~ 366 (367)
|+-+.. ..-..+++.+++++
T Consensus 458 RfRPsLvf~~~Ha~i~l~~~~k 479 (484)
T KOG1405|consen 458 RFRPSLVFRKHHADIFLDIFDK 479 (484)
T ss_pred eeccceeehhhhHHHHHHHHHH
Confidence 654433 33345666666543
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.9e-05 Score=58.22 Aligned_cols=54 Identities=13% Similarity=0.076 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhc--CC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcc
Q 017726 42 ALTKTLLEDIKKIFK--TT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF 95 (367)
Q Consensus 42 ~~~~~~~~~la~~~~--~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~ 95 (367)
...+.+.+.+.+.+| .+ .+++|++|+|+++++..++.++++|||.|+++.|.|.
T Consensus 96 ~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~ 152 (153)
T PLN02994 96 NFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYA 152 (153)
T ss_pred HHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 344444444444545 32 3456999999999999999999999999999999664
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.032 Score=46.85 Aligned_cols=173 Identities=15% Similarity=0.201 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHhcCCC-CceEEecCChh-HHHHHHHHcc--CCCCCe-EEEEeCCcchHHHHHHHHHhCCceEEEeCC
Q 017726 42 ALTKTLLEDIKKIFKTTS-GTPFLIPTTGT-GAWESALTNT--LSPGDR-IISFLIGQFSLLWIDQQQRLNFNVDVVESD 116 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~-~~~v~~~~ggt-~al~~~~~~~--~~~gd~-vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 116 (367)
-+.+++...+-++.|+.. ..++++ +=+| -++.+++.++ ..|..+ |+-+.-..-+. + +..-..|++++.+.--
T Consensus 57 ~isne~a~~~i~l~glhav~nc~vv-pl~tgmslslc~~s~r~krpkakyiiw~ridqks~-~-ksi~~agfepiiie~i 133 (432)
T KOG3843|consen 57 CISNEFAKDAIHLAGLHAVANCFVV-PLATGMSLSLCFLSLRHKRPKAKYIIWLRIDQKSC-F-KSIIHAGFEPIIIENI 133 (432)
T ss_pred HHHHHHHHHHHHHhhhhhhhceeEE-eccccccHHHHHHHHhhcCCcccEEEEEecchHHH-H-HHHHhcCCCceeeecc
Confidence 445666666777777752 233333 3333 4455555554 344444 33333322221 2 3334578888777532
Q ss_pred CCC---CCCHHHHHHHHhccCCCCccEEEEEecCCCccccc-----cHHHHHHHHHhcCCCcEEEEeeeeccCceee---
Q 017726 117 WGE---GAKLDVLASKLAADTAHTIKAICIVHNETATGVTN-----NLSKVRKLLDEYRHPALFLVDGVSSICAIDF--- 185 (367)
Q Consensus 117 ~~~---~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~-----~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~--- 185 (367)
-++ .-|++.+++++++.+ +..|+..+ +.|.... .+++|..+|.. |+++-++..+|+......
T Consensus 134 ~d~d~l~tdleav~~~iee~g---~dcilci~--sttscfapr~pd~leaiaaica~--~diphivnnayglqsee~i~~ 206 (432)
T KOG3843|consen 134 LDGDELITDLEAVEAIIEELG---EDCILCIH--STTSCFAPRSPDNLEAIAAICAA--HDIPHIVNNAYGLQSEECIHK 206 (432)
T ss_pred ccchHHHHhHHHHHHHHHHhC---CceEEEEe--ecccccCCCCCchHHHHHHHHHc--cCchhhhccccccchHHHHHH
Confidence 222 348999999999754 34443332 2233332 38999999999 999999999988754321
Q ss_pred --ccccc-cceEEEecCCCcccCCCcceeee-eCHHHHHHhcc
Q 017726 186 --RMDEW-GIDVALTGSQKALSLPTGMGIVC-ASPKALEASKT 224 (367)
Q Consensus 186 --~~~~~-~~d~~~~s~~K~~~g~~g~g~~~-~~~~~~~~~~~ 224 (367)
...++ .+|.++-|..|.|.-|-|..++. .+..+++.+..
T Consensus 207 iaa~~~~grida~vqsldknf~vpvggaiia~fk~n~iq~iak 249 (432)
T KOG3843|consen 207 IAAAAECGRIDAFVQSLDKNFMVPVGGAIIAAFKDNFIQEIAK 249 (432)
T ss_pred HHHHhhhccHHHHHHHhhhcceeecchhHhhHhHHHHHHHHHH
Confidence 01111 36888899999998887744333 57777777664
|
|
| >KOG0630 consensus Predicted pyridoxal-dependent decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.71 E-value=4 Score=37.96 Aligned_cols=191 Identities=13% Similarity=0.047 Sum_probs=105.0
Q ss_pred EEEEeCCcchHHHHHHHHHhCCceEEEeC----C---CCCCCCHHHHHHHHhccC-C-CCccEEEEEecCCCccccccHH
Q 017726 87 IISFLIGQFSLLWIDQQQRLNFNVDVVES----D---WGEGAKLDVLASKLAADT-A-HTIKAICIVHNETATGVTNNLS 157 (367)
Q Consensus 87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~----~---~~~~~d~e~l~~~i~~~~-~-~~~~lv~~~~~~n~tG~~~~~~ 157 (367)
+++..+..+..+..-+++.+|+....+.. + .++++|.-.+++.|++.- + .+|-+++..-..+-.|...-+-
T Consensus 233 t~YiS~alh~~l~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~GqnDmi~ 312 (838)
T KOG0630|consen 233 TFYISEALHMDLLHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQNDMIL 312 (838)
T ss_pred eEEEcccccHHHHHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcchHHHH
Confidence 34444434444444567778876544321 1 135789889999988742 1 3344445555557788888899
Q ss_pred HHHHHHHhcCCC-cEEEEeeeeccCceee----ccc---cccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCc
Q 017726 158 KVRKLLDEYRHP-ALFLVDGVSSICAIDF----RMD---EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR 229 (367)
Q Consensus 158 ~i~~~~~~~~~~-~~vi~D~~~~~~~~~~----~~~---~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~ 229 (367)
+|.++|++ ++ .|++.-+- +..++.+ ... ....|.+.....-|++ .+-.-++.....+...-.. .
T Consensus 313 kildi~ea--hakfWLHasGh-aiAALt~aepnnil~HV~eqldSMal~ialWLG-iPSaPiV~LHRPleg~aaS----a 384 (838)
T KOG0630|consen 313 KILDICEA--HAKFWLHASGH-AIAALTCAEPNNILGHVEEQLDSMALNIALWLG-IPSAPIVLLHRPLEGSAAS----A 384 (838)
T ss_pred HHHHHHHH--hhheeEeeccc-hhhheeecCcccchhHHHHHHhhccchhHHHhC-CCCCceEEeecccccccch----h
Confidence 99999999 65 78776532 2111111 100 1124566666667774 4444555554332110000 0
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccC
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQ 299 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 299 (367)
+-.| .-...++ +. ..++.++..+....+..++.....+.+.+.+.+.+. ++++++.
T Consensus 385 fesd-pi~rekL----------da---Lp~Wta~q~LggKaIadmienAFll~kilfe~aSa~~eiemig~ 441 (838)
T KOG0630|consen 385 FESD-PILREKL----------DA---LPLWTALQALGGKAIADMIENAFLLCKILFEGASACEEIEMIGH 441 (838)
T ss_pred cccC-hHHHHhh----------cc---chHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhcCCceeEecc
Confidence 0000 0000111 11 234566666666657777788888888888888775 6766653
|
|
| >PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin) | Back alignment and domain information |
|---|
Probab=87.32 E-value=4.9 Score=29.86 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=51.3
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeee
Q 017726 99 WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
....++..|.++..++.+ .+.+++.+.+.+ .++++|.++.. .+.......++.+..|+...++.+++=+.+
T Consensus 20 la~~l~~~G~~v~~~d~~----~~~~~l~~~~~~---~~pd~V~iS~~--~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 20 LAAYLRKAGHEVDILDAN----VPPEELVEALRA---ERPDVVGISVS--MTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp HHHHHHHTTBEEEEEESS----B-HHHHHHHHHH---TTCSEEEEEES--SSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred HHHHHHHCCCeEEEECCC----CCHHHHHHHHhc---CCCcEEEEEcc--CcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 456677789999888765 345888888776 46799988764 234445677788888775568898887766
Q ss_pred c
Q 017726 179 S 179 (367)
Q Consensus 179 ~ 179 (367)
.
T Consensus 91 ~ 91 (121)
T PF02310_consen 91 A 91 (121)
T ss_dssp S
T ss_pred h
Confidence 4
|
Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A .... |
| >TIGR03573 WbuX N-acetyl sugar amidotransferase | Back alignment and domain information |
|---|
Probab=85.72 E-value=13 Score=33.61 Aligned_cols=126 Identities=13% Similarity=0.018 Sum_probs=69.1
Q ss_pred cHHHHHHHHHHHHHHHhcCCC--CceEEecCChhHHHHHHHHccCCCCCeE--EEEeCCcchH----HHHHHHHHhCCce
Q 017726 39 AVPALTKTLLEDIKKIFKTTS--GTPFLIPTTGTGAWESALTNTLSPGDRI--ISFLIGQFSL----LWIDQQQRLNFNV 110 (367)
Q Consensus 39 ~~~~~~~~~~~~la~~~~~~~--~~~v~~~~ggt~al~~~~~~~~~~gd~v--l~~~~~~~~~----~~~~~~~~~g~~~ 110 (367)
++.....++++.+.++-+... -++++..+||-.+..++......-|..+ ++.++++.+. .....++.+|+++
T Consensus 37 ~~~~~~~~l~~l~~~~k~~~~~~yD~iV~lSGGkDSs~la~ll~~~~gl~~l~vt~~~~~~~e~~~~n~~~~~~~lgvd~ 116 (343)
T TIGR03573 37 DWDEREKELEELVDKIKKKGGGRYDCIIGVSGGKDSTYQAHVLKKKLGLNPLLVTVDPGWNTELGVKNLNNLIKKLGFDL 116 (343)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHHHhCCceEEEEECCCCCCHHHHHHHHHHHHHcCCCe
Confidence 345556667777766654433 4578888999877665422211123333 4555554432 1446677789998
Q ss_pred EEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeec
Q 017726 111 DVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSS 179 (367)
Q Consensus 111 ~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~ 179 (367)
..+..+ .+.+.....+.. + -...|..+.. ......+.++|++ +|+.+|+.+.+.
T Consensus 117 ~~i~~d------~~~~~~l~~~~~----~--~~~~pc~~c~-~~~~~~l~~~A~~--~gi~~Il~G~~~ 170 (343)
T TIGR03573 117 HTITIN------PETFRKLQRAYF----K--KVGDPEWPQD-HAIFASVYQVALK--FNIPLIIWGENI 170 (343)
T ss_pred EEEeCC------HHHHHHHHHHHH----h--ccCCCchhhh-hHHHHHHHHHHHH--hCCCEEEeCCCH
Confidence 888764 344433332100 0 0111111111 1235678889999 999999887654
|
This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an |
| >COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.68 E-value=13 Score=34.09 Aligned_cols=95 Identities=9% Similarity=0.063 Sum_probs=59.9
Q ss_pred HHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCC--
Q 017726 72 AWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETA-- 149 (367)
Q Consensus 72 al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~-- 149 (367)
.+..+...+...+ +|++...+-....+.-.++++|+....+.+-.+ .++|++.+.+++ .+|+++++.+.++.
T Consensus 109 LLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aE--t~~e~I~~~l~~---~~p~lvVIDSIQT~~s 182 (456)
T COG1066 109 LLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAE--TNLEDIIAELEQ---EKPDLVVIDSIQTLYS 182 (456)
T ss_pred HHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCCCccceEEehh--cCHHHHHHHHHh---cCCCEEEEeccceeec
Confidence 3333344445555 777776654444455567888865443333222 378999998887 57899998877642
Q ss_pred -c-----ccccc----HHHHHHHHHhcCCCcEEEE
Q 017726 150 -T-----GVTNN----LSKVRKLLDEYRHPALFLV 174 (367)
Q Consensus 150 -t-----G~~~~----~~~i~~~~~~~~~~~~vi~ 174 (367)
. |.+.- -.++.++||+ .|+.++.
T Consensus 183 ~~~~SapGsVsQVRe~t~~L~~~AK~--~~i~~fi 215 (456)
T COG1066 183 EEITSAPGSVSQVREVAAELMRLAKT--KNIAIFI 215 (456)
T ss_pred ccccCCCCcHHHHHHHHHHHHHHHHH--cCCeEEE
Confidence 2 54432 3468889999 8887665
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=81.38 E-value=40 Score=30.19 Aligned_cols=136 Identities=15% Similarity=0.179 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHhcC-------------CCCceEEecC-Ch---hHHHHHHHHccCCCCCeEEEEeCCcchHH----
Q 017726 40 VPALTKTLLEDIKKIFKT-------------TSGTPFLIPT-TG---TGAWESALTNTLSPGDRIISFLIGQFSLL---- 98 (367)
Q Consensus 40 ~~~~~~~~~~~la~~~~~-------------~~~~~v~~~~-gg---t~al~~~~~~~~~~gd~vl~~~~~~~~~~---- 98 (367)
.....+.+++.+.+++.- ..+..+++++ || |..+-.+..-+.+.|-+|++.....|-.-
T Consensus 106 ~~~v~~~l~~~l~~il~~~~~~~~~~~~~~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQ 185 (340)
T COG0552 106 EETVKEALREALIEILRPVDKVDLPLEIPKEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQ 185 (340)
T ss_pred HHHHHHHHHHHHHHHhcccccccchhhhccCCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHH
Confidence 344455566666666652 1234333332 33 45555555556678889998888666532
Q ss_pred HHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhccCCCCccEEEEEec---CCCccccccHHHHHHHHHhc----CCCc
Q 017726 99 WIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHN---ETATGVTNNLSKVRKLLDEY----RHPA 170 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~~-~~~d~e~l~~~i~~~~~~~~~lv~~~~~---~n~tG~~~~~~~i~~~~~~~----~~~~ 170 (367)
....+++.|++++.-+...| -.+-.+.++++..+ +.++|++.+. ||-...+..+++|.+++++. +|-+
T Consensus 186 L~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar----~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~ 261 (340)
T COG0552 186 LEVWGERLGVPVISGKEGADPAAVAFDAIQAAKAR----GIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEI 261 (340)
T ss_pred HHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHc----CCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceE
Confidence 23456778888776542211 12345778888774 5588888763 34455555688888888872 2447
Q ss_pred EEEEeeeec
Q 017726 171 LFLVDGVSS 179 (367)
Q Consensus 171 ~vi~D~~~~ 179 (367)
+++.|+..+
T Consensus 262 llvlDAttG 270 (340)
T COG0552 262 LLVLDATTG 270 (340)
T ss_pred EEEEEcccC
Confidence 888898754
|
|
| >COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.13 E-value=18 Score=31.99 Aligned_cols=113 Identities=13% Similarity=0.123 Sum_probs=61.6
Q ss_pred EEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCC----------------------C
Q 017726 63 FLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGE----------------------G 120 (367)
Q Consensus 63 v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~----------------------~ 120 (367)
+.+++||-+-+...+...+.-...++-.-.+..+..+....+..|++...++.+.+. .
T Consensus 31 ~~~~aGGKGINVa~vL~~lG~~~~a~GflGg~tg~~~~~~l~~~gi~~~fv~v~g~TRinvki~~~~~~~~Tein~~Gp~ 110 (310)
T COG1105 31 VTKTAGGKGINVARVLKDLGIPVTALGFLGGFTGEFFVALLKDEGIPDAFVEVKGDTRINVKILDEEDGEETEINFPGPE 110 (310)
T ss_pred ceecCCCCceeHHHHHHHcCCCceEEEecCCccHHHHHHHHHhcCCCceEEEccCCCeeeEEEEecCCCcEEEecCCCCC
Confidence 456666666555555444444334444444444333444455555555444432211 2
Q ss_pred CCHHHHHHHHhccC--CCCccEEEEEecCCCcccccc-HHHHHHHHHhcCCCcEEEEeeee
Q 017726 121 AKLDVLASKLAADT--AHTIKAICIVHNETATGVTNN-LSKVRKLLDEYRHPALFLVDGVS 178 (367)
Q Consensus 121 ~d~e~l~~~i~~~~--~~~~~lv~~~~~~n~tG~~~~-~~~i~~~~~~~~~~~~vi~D~~~ 178 (367)
++.+++++.++.-. .....+|+++ .+=|.|.-.+ ..+|.++|++ .|+.|++|...
T Consensus 111 is~~~~~~~l~~~~~~l~~~d~Vvls-GSlP~g~~~d~y~~li~~~~~--~g~~vilD~Sg 168 (310)
T COG1105 111 ISEAELEQFLEQLKALLESDDIVVLS-GSLPPGVPPDAYAELIRILRQ--QGAKVILDTSG 168 (310)
T ss_pred CCHHHHHHHHHHHHHhcccCCEEEEe-CCCCCCCCHHHHHHHHHHHHh--cCCeEEEECCh
Confidence 34444444433210 0233455544 5567776665 6789999999 99999999764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 367 | ||||
| 2dr1_A | 386 | Crystal Structure Of The Ph1308 Protein From Pyroco | 7e-39 | ||
| 1vjo_A | 393 | Crystal Structure Of Alanine--Glyoxylate Aminotrans | 1e-37 | ||
| 2huf_A | 393 | Crystal Structure Of Aedes Aegypti Alanine Glyoxyla | 5e-35 | ||
| 3isl_A | 416 | Crystal Structure Of Ureidoglycine-Glyoxylate Amino | 5e-34 | ||
| 1j04_A | 392 | Structural Mechanism Of Enzyme Mistargeting In Here | 1e-32 | ||
| 2ch1_A | 396 | Structure Of Anopheles Gambiae 3-Hydroxykynurenine | 2e-32 | ||
| 1h0c_A | 392 | The Crystal Structure Of Human Alanine:glyoxylate A | 3e-32 | ||
| 3r9a_A | 394 | Human Alanine-Glyoxylate Aminotransferase In Comple | 1e-31 | ||
| 3kgx_A | 393 | Crystal Structure Of Putative Aminotransferase (Aah | 6e-30 | ||
| 3zrp_A | 384 | Crystal Structure And Substrate Specificity Of A Th | 6e-29 | ||
| 3nnk_A | 411 | Biochemical And Structural Characterization Of A Ur | 1e-28 | ||
| 2z9u_A | 392 | Crystal Structure Of Pyridoxamine-Pyruvate Aminotra | 6e-28 | ||
| 2bkw_A | 385 | Yeast Alanine:glyoxylate Aminotransferase Yfl030w L | 9e-27 | ||
| 2yri_A | 353 | Crystal Structure Of Alanine-pyruvate Aminotransfer | 5e-25 | ||
| 1iug_A | 352 | The Crystal Structure Of Aspartate Aminotransferase | 8e-23 | ||
| 3f0h_A | 376 | Crystal Structure Of Aminotransferase (Rer070207000 | 4e-15 | ||
| 1m32_A | 366 | Crystal Structure Of 2-Aminoethylphosphonate Transa | 1e-11 | ||
| 3ffr_A | 362 | Crystal Structure Of A Phosphoserine Aminotransfera | 1e-07 | ||
| 1t3i_A | 420 | Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE De | 2e-04 |
| >pdb|2DR1|A Chain A, Crystal Structure Of The Ph1308 Protein From Pyrococcus Horikoshii Ot3 Length = 386 | Back alignment and structure |
|
| >pdb|1VJO|A Chain A, Crystal Structure Of Alanine--Glyoxylate Aminotransferase (Alr1004) From Nostoc Sp. At 1.70 A Resolution Length = 393 | Back alignment and structure |
|
| >pdb|2HUF|A Chain A, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate Aminotransferase Length = 393 | Back alignment and structure |
|
| >pdb|3ISL|A Chain A, Crystal Structure Of Ureidoglycine-Glyoxylate Aminotransferase (Pucg) From Bacillus Subtilis Length = 416 | Back alignment and structure |
|
| >pdb|1J04|A Chain A, Structural Mechanism Of Enzyme Mistargeting In Hereditary Kidney Stone Disease In Vitro Length = 392 | Back alignment and structure |
|
| >pdb|2CH1|A Chain A, Structure Of Anopheles Gambiae 3-Hydroxykynurenine Transaminase Length = 396 | Back alignment and structure |
|
| >pdb|1H0C|A Chain A, The Crystal Structure Of Human Alanine:glyoxylate Aminotransferase Length = 392 | Back alignment and structure |
|
| >pdb|3R9A|A Chain A, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p Length = 394 | Back alignment and structure |
|
| >pdb|3KGX|A Chain A, Crystal Structure Of Putative Aminotransferase (Aah25799.1) From Mus Musculus At 1.80 A Resolution Length = 393 | Back alignment and structure |
|
| >pdb|3ZRP|A Chain A, Crystal Structure And Substrate Specificity Of A Thermophilic Archaeal Serine : Pyruvate Aminotransferase From Sulfolobus Solfataricus Length = 384 | Back alignment and structure |
|
| >pdb|3NNK|A Chain A, Biochemical And Structural Characterization Of A Ureidoglycine Aminotransferase In The Klebsiella Pneumoniae Uric Acid Catabolic Pathway Length = 411 | Back alignment and structure |
|
| >pdb|2Z9U|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate Aminotransferase From Mesorhizobium Loti At 2.0 A Resolution Length = 392 | Back alignment and structure |
|
| >pdb|2BKW|A Chain A, Yeast Alanine:glyoxylate Aminotransferase Yfl030w Length = 385 | Back alignment and structure |
|
| >pdb|2YRI|A Chain A, Crystal Structure Of Alanine-pyruvate Aminotransferase With 2- Methylserine Length = 353 | Back alignment and structure |
|
| >pdb|1IUG|A Chain A, The Crystal Structure Of Aspartate Aminotransferase Which Belongs To Subgroup Iv From Thermus Thermophilus Length = 352 | Back alignment and structure |
|
| >pdb|3F0H|A Chain A, Crystal Structure Of Aminotransferase (Rer070207000802) From Eubacterium Rectale At 1.70 A Resolution Length = 376 | Back alignment and structure |
|
| >pdb|1M32|A Chain A, Crystal Structure Of 2-Aminoethylphosphonate Transaminase Length = 366 | Back alignment and structure |
|
| >pdb|3FFR|A Chain A, Crystal Structure Of A Phosphoserine Aminotransferase Serc (chu_0995) From Cytophaga Hutchinsonii Atcc 33406 At 1.75 A Resolution Length = 362 | Back alignment and structure |
|
| >pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE Desulfurase From Synechocystis Pcc 6803 Length = 420 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} Length = 411 | Back alignment and structure |
|---|
Score = 465 bits (1199), Expect = e-164
Identities = 87/367 (23%), Positives = 158/367 (43%), Gaps = 24/367 (6%)
Query: 5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFL 64
P L PGP++ +V+RAM+ PA+ ++ + +F+T + L
Sbjct: 9 LNPPSRLLMGPGPINADPRVLRAMSSQLIGQYDPAMTHYMNEVMALYRGVFRTENRWTML 68
Query: 65 IPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLD 124
+ T E+ L + + PGD+++ + G+F L + +R V +E WGE D
Sbjct: 69 VDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWGEVFTPD 128
Query: 125 VLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID 184
+ + + + V +T+T + L+++ ++ R+ ALF D +S+
Sbjct: 129 QVEDAVK---RIRPRLLLTVQGDTSTTMLQPLAELGEICR--RYDALFYTDATASLGGNP 183
Query: 185 FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV-------------- 230
D WG+D G QK L P+G + S + EA + K V
Sbjct: 184 LETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEM 243
Query: 231 ----FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATR 286
+FD + ++ +T + L+G R LI +EGL+ I RH+ G A
Sbjct: 244 IYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALV 303
Query: 287 LAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVF 346
++A GL+ + + V V++P IN + + + + + +G + GKV+
Sbjct: 304 KGIQAMGLETFG-DLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFGPLHGKVW 362
Query: 347 RIGHLGH 353
RIG +G+
Sbjct: 363 RIGTMGY 369
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* Length = 396 | Back alignment and structure |
|---|
Score = 461 bits (1188), Expect = e-163
Identities = 90/357 (25%), Positives = 165/357 (46%), Gaps = 10/357 (2%)
Query: 7 PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIP 66
+ + PGP + +V+ AM + + + ++ IF+T + +
Sbjct: 16 IPEKIMMGPGPSNCSKRVLTAMTNTVLSNFHAELFRTMDEVKDGLRYIFQTENRATMCVS 75
Query: 67 TTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVL 126
+ E+ L+N L GDR++ + G ++ ++ +R +V +E L+ L
Sbjct: 76 GSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETL 135
Query: 127 ASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR 186
A A H K + + H ++++G+ L V ++ +H L +VD V+S+C + F
Sbjct: 136 A---RAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICH--QHDCLLIVDAVASLCGVPFY 190
Query: 187 MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDW-----KDYIKFY 241
MD+W ID TG+QK L P G+ + SPKAL+ + ++ F W +Y Y
Sbjct: 191 MDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCY 250
Query: 242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKE 301
+ + +T + L++ LR AL I EEGLEN I+R + + GL +
Sbjct: 251 DEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDP 310
Query: 302 EWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358
TVT +++P ++ ++ + A ++L + GL GK +R+G +G + V
Sbjct: 311 RHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQ 367
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* Length = 393 | Back alignment and structure |
|---|
Score = 460 bits (1187), Expect = e-163
Identities = 96/358 (26%), Positives = 162/358 (45%), Gaps = 10/358 (2%)
Query: 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
+ + L PGP ++ +V+ A + + + + + + + I+ +F+T +
Sbjct: 15 LSKPLSVPTRLLLGPGPSNLAPRVLAAGSLRMIGHMQKEMLQIMEEIKQGIQYVFQTRNP 74
Query: 61 TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
++ +G A E+AL N L PGD ++ G + + + R+ V + GE
Sbjct: 75 LTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPGEH 134
Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
L + LA H + +VH E++TGV L +L R+ L LVD V+S+
Sbjct: 135 YTLQEVEEGLAQ---HKPVLLFLVHGESSTGVVQPLDGFGELCH--RYQCLLLVDSVASL 189
Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV--FFDWKDYI 238
+ MD+ GID+ + SQK L+ P G+ ++ + KA + K+ V + D
Sbjct: 190 GGVPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLA 249
Query: 239 KFY---NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLK 295
K + +T + LY LR +L LI E+GLEN RHR ++ GLK
Sbjct: 250 KLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLK 309
Query: 296 NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH 353
+ E T+T V VP+ N +IV +++ + GL +V RIG LG+
Sbjct: 310 FFVKDPEIRLPTITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGY 367
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} Length = 386 | Back alignment and structure |
|---|
Score = 460 bits (1185), Expect = e-163
Identities = 102/353 (28%), Positives = 169/353 (47%), Gaps = 7/353 (1%)
Query: 7 PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIP 66
K LF GPV +V+ M +RS + +E +++ + G L+P
Sbjct: 18 KPKYKLFTAGPVACFPEVLEIMKVQMFSHRSKEYRKVHMDTVERLREFLEVEKGEVLLVP 77
Query: 67 TTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVL 126
++GTG E+++ N +S G +++ +IG F + + + V+E + G+ K + L
Sbjct: 78 SSGTGIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDL 137
Query: 127 ASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR 186
L + ++A+ I +NET+TGV N L ++ K+ H L VD VS++ D +
Sbjct: 138 DDALRKN--PDVEAVTITYNETSTGVLNPLPELAKVAK--EHDKLVFVDAVSAMGGADIK 193
Query: 187 MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTF 246
D+WG+DV + SQKA +P G+ I S + LE ++ +FD Y+K+
Sbjct: 194 FDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKES 253
Query: 247 WPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFS 305
P TP + ++G+ AL +I + G E +E + + K R V GL + S
Sbjct: 254 TPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILA-EPGHES 312
Query: 306 DTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358
T+TAV+ P I E V A ++ L G V K FRIGH+G++
Sbjct: 313 PTITAVLTPPGIKGDE-VYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFED 364
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* Length = 392 | Back alignment and structure |
|---|
Score = 459 bits (1183), Expect = e-162
Identities = 89/358 (24%), Positives = 152/358 (42%), Gaps = 7/358 (1%)
Query: 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
M Y GPV+ +V+R + R PA L + +++ +K + +
Sbjct: 1 MRYPEHADPVITLTAGPVNAYPEVLRGLGRTVLYDYDPAFQLLYEKVVDKAQKAMRLS-N 59
Query: 61 TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
P ++ E+A + +SP D +++ G + + +R + ++ +E + E
Sbjct: 60 KPVILHGEPVLGLEAAAASLISPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYNEA 119
Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
+A L A I + + H++T +G N + + L+ H A +VD VSS
Sbjct: 120 IDPQAVADMLKAH--PEITVVSVCHHDTPSGTINPIDAIGALVSA--HGAYLIVDAVSSF 175
Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV--RVFFDWKDYI 238
+ ++ D+ +TG K L P G+ ++ S +A K D+
Sbjct: 176 GGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWE 235
Query: 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCT 298
++ +P+TPS+ + GL ALDL EG E V RH KA R V A GL
Sbjct: 236 NAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAMGLSVWA 295
Query: 299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNE 356
+ S T TAV P ++ + + A RY + G + GK+ RIGH+G +
Sbjct: 296 ASDSIASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQ 353
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 Length = 393 | Back alignment and structure |
|---|
Score = 459 bits (1182), Expect = e-162
Identities = 102/358 (28%), Positives = 174/358 (48%), Gaps = 9/358 (2%)
Query: 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
++ + P + L PGP + V++AMN + + PA AL + ++ +++T +
Sbjct: 27 LEPLEVPSR-LLLGPGPSNAHPSVLQAMNVSPVGHLDPAFLALMDEIQSLLRYVWQTENP 85
Query: 61 TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
+ TGT A E+ + N + PGD ++ + G F +D R +V + WGE
Sbjct: 86 LTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEV 145
Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
L+ L + L H + +VH ET+TG L V +L L LVD V+S+
Sbjct: 146 FSLEELRTALE---THRPAILALVHAETSTGARQPLEGVGELCR--EFGTLLLVDTVTSL 200
Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV--FFDWKDYI 238
+ +D WG+D+A + SQK L G S +A+E + ++ + D
Sbjct: 201 GGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLG 260
Query: 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCT 298
K++ + +T I L Y LR AL LI +EGL N +RH++ + +E GL
Sbjct: 261 KYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHV 320
Query: 299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNE 356
++E+ T+T V +P ++ + RR +N+ +G GL ++AGKV+R+G +G +
Sbjct: 321 -EKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSR 377
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* Length = 393 | Back alignment and structure |
|---|
Score = 458 bits (1181), Expect = e-162
Identities = 103/352 (29%), Positives = 158/352 (44%), Gaps = 11/352 (3%)
Query: 7 PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIP 66
L PGP + P +V+ AM+R + P + + E ++ +F+T + F +
Sbjct: 17 TPNKLLMGPGPSNAPQRVLDAMSRPILGHLHPETLKIMDDIKEGVRYLFQTNNIATFCLS 76
Query: 67 TTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVL 126
+G G E+ L N L GD I+ G + D R +V VV+S G+ LD +
Sbjct: 77 ASGHGGMEATLCNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEI 136
Query: 127 ASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR 186
L H + + +++TGV L V L +H L +VD V+S+
Sbjct: 137 RDALL---IHKPSVLFLTQGDSSTGVLQGLEGVGALCH--QHNCLLIVDTVASLGGAPMF 191
Query: 187 MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDW-----KDYIKFY 241
MD W ID TGSQK L P G+ V S +A+E K + + W DY +
Sbjct: 192 MDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCF 251
Query: 242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKE 301
+ +T S LLYGLR A+ + EEGL +I RH K ++ G +
Sbjct: 252 GRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFELYA-DP 310
Query: 302 EWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH 353
+ TVT + VP ++ + + A + Y + + GL AG+VFRIG +G
Sbjct: 311 KDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQ 362
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} Length = 416 | Back alignment and structure |
|---|
Score = 455 bits (1172), Expect = e-160
Identities = 91/369 (24%), Positives = 166/369 (44%), Gaps = 26/369 (7%)
Query: 5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFL 64
+ PGPV + +V+R M+ PA + +E ++++F+T + +
Sbjct: 7 LCTPLRTIMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYP 66
Query: 65 IPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLD 124
I T E+ L + + P D ++ + G+F L + +R NV ++E +WG +
Sbjct: 67 IDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWGTVFDPE 126
Query: 125 VLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID 184
+ ++ K + +VH ET+TG + L + + ALF+VD V++I +
Sbjct: 127 DIIREIK---KVKPKIVAMVHGETSTGRIHPLKAIGEACR--TEDALFIVDAVATIGGCE 181
Query: 185 FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV---------------- 228
++DEW ID A+ G+QK LS+P+GM + + + + K V
Sbjct: 182 VKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGN 241
Query: 229 ----RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKA 284
+FD +++ +T + +LY LR + L+ EEGLE ERHR A
Sbjct: 242 RPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAA 301
Query: 285 TRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGK 344
++A GL+ + VT V +P I+ + ++ + + +AGK
Sbjct: 302 LAAGIKAMGLRLFG-DDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGK 360
Query: 345 VFRIGHLGH 353
++RIG +G+
Sbjct: 361 IWRIGTMGY 369
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* Length = 384 | Back alignment and structure |
|---|
Score = 443 bits (1142), Expect = e-156
Identities = 104/353 (29%), Positives = 168/353 (47%), Gaps = 15/353 (4%)
Query: 12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTT-SGTPFLIPTTGT 70
L GP I + V+ A NN + S L+ ++ + + + P +IP GT
Sbjct: 5 LLHVGPTTIKEDVLVAGLENNVGFTSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGT 64
Query: 71 GAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKL 130
A E ++T+ L P D+I+ G F W +R NV V+ G+ K + ++
Sbjct: 65 SAME-SVTSLLKPNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEV 123
Query: 131 AADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW 190
K + + H ET+TGV + V + ++ L +VDGVSS+ A + + +EW
Sbjct: 124 RK---SEYKLVALTHVETSTGVREPVKDVINKIR--KYVELIVVDGVSSVGAEEVKAEEW 178
Query: 191 GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF----DWKDYIKFYNLGTF 246
+DV LT SQKAL G+G++ SPKAL + S+ ++ +W ++ G
Sbjct: 179 NVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKA 238
Query: 247 -WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFS 305
+ TP + ++ L A LI +EG+EN I+RH + A R +EA GL+ ++ E +S
Sbjct: 239 AYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLEIVARRPESYS 298
Query: 306 DTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358
+TVT VI+ V + G++ A K FRIGH+G +
Sbjct: 299 NTVTGVILKVADPQK--VLAGTVNEGVEFAPGVHP-AFKYFRIGHMGWVTPND 348
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 Length = 352 | Back alignment and structure |
|---|
Score = 433 bits (1117), Expect = e-153
Identities = 83/349 (23%), Positives = 154/349 (44%), Gaps = 17/349 (4%)
Query: 10 NHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTG 69
+ L PGPV + + + A+ R +R+ A + +++ F+T G ++ +G
Sbjct: 2 DWLLTPGPVRLHPKALEALARPQLHHRTEAAREVFLKARGLLREAFRTE-GEVLILTGSG 60
Query: 70 TGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASK 129
T A E+ + N +PG+R++ + G+FS + + V+ ++ +G+ + + +A
Sbjct: 61 TLAMEALVKNLFAPGERVLVPVYGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVA-- 118
Query: 130 LAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDE 189
+ +VH+ET+TG +L + + E L D V+S+ + ++
Sbjct: 119 -----KEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEA 173
Query: 190 WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPY 249
G+D A +GSQK L P G+G V SP+ALE K + D +K G +
Sbjct: 174 MGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPR---GYYLDLARELKAQKEGES-AW 229
Query: 250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVT 309
TP+I L+ + A L+ + E + E GL+ + FS V
Sbjct: 230 TPAINLVLAVAAVLEEVLPRL-EEHLALKAWQNALLYGVGEEGGLRPV---PKRFSPAVA 285
Query: 310 AVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358
A +P + + V+ A+ + + G + GKVFR+ +G +
Sbjct: 286 AFYLPEGVPYAR-VKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYE 333
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 Length = 385 | Back alignment and structure |
|---|
Score = 433 bits (1115), Expect = e-152
Identities = 94/366 (25%), Positives = 173/366 (47%), Gaps = 25/366 (6%)
Query: 6 APGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGT---P 62
+ L +PGP+ + V +A++ + + SP ++ + +L++ + +FK+ + + P
Sbjct: 2 TKSVDTLLIPGPIILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQP 61
Query: 63 FLIPTTGTGAWESALTNTL---SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES-DWG 118
F++ +GT W+ +N + +P ++ G FS + D + VDVV G
Sbjct: 62 FVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIG 121
Query: 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178
E L+++ KL+ ++ A+ + H +T+T V ++L + + + + F+VD V
Sbjct: 122 ESVPLELITEKLSQ---NSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVC 178
Query: 179 SICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALE----ASKTAKSVRVFFD- 233
SI +F DEWG+D ALT SQKA+ P G+ I S + ++ SK F
Sbjct: 179 SIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSL 238
Query: 234 --WKDYIKFYNLGT-FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAV- 289
W ++ Y G + TP +QL+ L AL I EEGL + HR + + ++
Sbjct: 239 RRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLV 298
Query: 290 EAWGLKNCTQK-EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK-VAGKVFR 347
L + ++ + +TAV V + V + + + + G++K + K R
Sbjct: 299 NGLQLTSVSRYPSNMSAHGLTAVYVADPPD----VIAFLKSHGVVIAGGIHKDIGPKYIR 354
Query: 348 IGHLGH 353
IGH+G
Sbjct: 355 IGHMGV 360
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* Length = 353 | Back alignment and structure |
|---|
Score = 425 bits (1096), Expect = e-150
Identities = 88/346 (25%), Positives = 152/346 (43%), Gaps = 14/346 (4%)
Query: 12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTP-FLIPTTGT 70
L PGP IP++V +A+ R + P V + + + E + +F G + +G+
Sbjct: 3 LLTPGPTPIPERVQKALLRPMRGHLDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGS 62
Query: 71 GAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKL 130
E+ L N ++ + G FS + + +V++ GE + +A L
Sbjct: 63 LGMEAGLANL--DRGPVLVLVNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARAL 120
Query: 131 AADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW 190
+ + +VH ET+TGV N + L E ALF +D V+++ + F M
Sbjct: 121 KR---RRYRMVALVHGETSTGVLNPAEAIGALAKE--AGALFFLDAVTTLGMLPFSMRAM 175
Query: 191 GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT 250
G+D A TGSQK LS P G+ + AS +A +A + + D + + G + +T
Sbjct: 176 GVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRG--WYLDLARVAEHWERGGY-HHT 232
Query: 251 PSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTA 310
+ L Y L ALDL+ EEG+ R R + ++A G + + TV
Sbjct: 233 TPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARGFRPYP--KASPLPTVLV 290
Query: 311 VIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNE 356
V P +++ + RA +++ G+ G+V R+G +G
Sbjct: 291 VRPPEGVDADR-LVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGAR 335
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} Length = 376 | Back alignment and structure |
|---|
Score = 426 bits (1098), Expect = e-149
Identities = 74/360 (20%), Positives = 151/360 (41%), Gaps = 14/360 (3%)
Query: 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
+ +Y F GPV ++V +R+ + + + + K G
Sbjct: 12 HENLYFQ-GMLNFTVGPVMSSEEVRAIGAEQVPYFRTTEFSSTMLENEKFMLEYAKAPEG 70
Query: 61 -TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGE 119
+ + TG+ E+ + N + D+++ G F ++ + ++ + G+
Sbjct: 71 SKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKLEHGK 130
Query: 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSS 179
+ KL + + +ET+T V + + + + + F+ D VS+
Sbjct: 131 KLTKE----KLYEYDNQNFTGLLVNVDETSTAVLYDTMMIGEFCKK--NNMFFVCDCVSA 184
Query: 180 ICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIK 239
A F M+E G DV +TGSQK L+ P G+ ++ +P+ +E + +K ++FD KD +K
Sbjct: 185 FLADPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALK 244
Query: 240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLKNCT 298
G P+TP++ +L + L I + G + + R R ++ +
Sbjct: 245 NQERGQ-TPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELV- 302
Query: 299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358
E ++ VT+V P+ N+ +I + Y + + ++ +FR+GH+G L
Sbjct: 303 --SESPANGVTSV-HPTTANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHED 359
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 Length = 366 | Back alignment and structure |
|---|
Score = 376 bits (967), Expect = e-130
Identities = 69/356 (19%), Positives = 137/356 (38%), Gaps = 11/356 (3%)
Query: 7 PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLI 65
L PGP+ V AM ++ + + + + + + + + G T L+
Sbjct: 2 SRNYLLLTPGPLTTSRTVKEAMLFDSCTWDDDYNIGVVEQIRQQLTALATASEGYTSVLL 61
Query: 66 PTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDV 125
+G+ A E+ L + L P D+++ G + ++ + + +
Sbjct: 62 QGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQA 121
Query: 126 LASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF 185
+ + L AD TI I +VH+ET TG+ N + +V L R+ ++VD +SS I
Sbjct: 122 IDAILNAD--PTISHIAMVHSETTTGMLNPIDEVGALAH--RYGKTYIVDAMSSFGGIPM 177
Query: 186 RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGT 245
+ ID ++ + K + G V A + L A K + + +
Sbjct: 178 DIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHG 237
Query: 246 FWPYTPSIQLLYGLRAALDLIFE-EGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWF 304
W +T + AL + + G+ +R+++ ++ + A G +E
Sbjct: 238 KWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLL-DDELH 296
Query: 305 SDTVTAVIVPSHINSS--EIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358
S +TA P E RR ++ + +++ FRIG++G +
Sbjct: 297 SPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVSQ--SDCFRIGNIGEVYAAD 350
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} Length = 379 | Back alignment and structure |
|---|
Score = 361 bits (929), Expect = e-124
Identities = 69/366 (18%), Positives = 131/366 (35%), Gaps = 30/366 (8%)
Query: 15 PGPVHIPDQVI----RAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGT 70
I + ++ S A + LL ++K ++ +IP +GT
Sbjct: 4 ALRQDIDPNGLLEYSVVYTDRALNHMSKAFQEVMNDLLSNLKTVYNAE--AAVIIPGSGT 61
Query: 71 GAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNF--NVDVVESDWGEGAKLDV--- 125
E A+ L+ + + G FS W ++ F + V+ ++ E +
Sbjct: 62 YGME-AVARQLTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEAPKPFA 120
Query: 126 ---LASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYR-HPALFLVDGVSSIC 181
+ + +A + H ET++G+ + ++ L + L ++D ++S C
Sbjct: 121 PVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIASGC 180
Query: 182 AIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFY 241
+ M E GIDV ++ QK S G+V S A++ ++ +S D K ++
Sbjct: 181 -VWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIM 239
Query: 242 ----NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNC 297
N G + T L R A+ E G + + + LG R + G+++
Sbjct: 240 RAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESV 299
Query: 298 TQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAG-----KVFRIGHLG 352
E + + V A+ L + G+ G K FR+G G
Sbjct: 300 A-AEGFEAPGVVVSYTE---RDDMHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFG 355
Query: 353 HLNEVM 358
Sbjct: 356 LDKLTD 361
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} Length = 362 | Back alignment and structure |
|---|
Score = 244 bits (626), Expect = 1e-78
Identities = 67/355 (18%), Positives = 135/355 (38%), Gaps = 26/355 (7%)
Query: 9 KNHLFVPGPVHIPDQVIRAMNRNNEDY------RSPAVPALTKTLLEDIKKIFKTTSGTP 62
F PGP + V + M ++ RS + KT +++K + + S
Sbjct: 4 NKIYFTPGPSELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYE 63
Query: 63 FLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAK 122
L + T WE + N + + + G FS + + L E+ +G+G
Sbjct: 64 VLFLASATEIWERIIQNCVE--KKSFHCVNGSFSKRFYEFAGELGREAYKEEAAFGKGFY 121
Query: 123 LDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICA 182
+ A+ IC+ HNET++GV+ + + D+ AL VD VSS+
Sbjct: 122 PADITVPADAE------IICLTHNETSSGVSMPVEDINTFRDKN-KDALIFVDAVSSLPY 174
Query: 183 IDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASK----TAKSVRVFFDWKDYI 238
D ID QK LP G+G+ + + +E SK KS+ + +
Sbjct: 175 PK--FDWTKIDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSML 232
Query: 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGL-KNC 297
+ + P TP+ ++ L + + + + ++ +E+ +
Sbjct: 233 EKARVNQT-PETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFG 291
Query: 298 TQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352
+ + ++T ++ + + EI + + +++++G G RI +
Sbjct: 292 VEDAK--LRSMTTIVANTTMLPGEI-NKILEPFDMAVGAGYGSKKETQIRIANFP 343
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 Length = 416 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 2e-11
Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 17/186 (9%)
Query: 102 QQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRK 161
L + D E +L + + H TG +++ +
Sbjct: 139 LADMLQQGYTLRLVDSPE---------ELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTA 189
Query: 162 LLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSL-PTGMGIVCASPKALE 220
L AL + D S A+ + + G D A+ + K L+ P V SP+ +
Sbjct: 190 LSH--ECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCD 247
Query: 221 ASKTAK----SVRVFFDW-KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275
F Y + + T I L + LD+ + + ++
Sbjct: 248 LVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLR 307
Query: 276 ERHRRL 281
+ L
Sbjct: 308 RKSLAL 313
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* Length = 398 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 3e-11
Identities = 56/307 (18%), Positives = 98/307 (31%), Gaps = 64/307 (20%)
Query: 9 KNHLFVPGPVHIPDQVIRAMNRNNEDY-----RSPAVPALTKTLLEDIKKIFKTTSGTPF 63
++ F GP + + ++ + R V L + + ++F
Sbjct: 40 RDGRFGSGPSKVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFS------- 92
Query: 64 LIPTT---------GTGAWESALTNTLSPGDRIISFLIGQFSLLW---IDQQQRLNFNVD 111
+P T W++A + R + G+FS + + + +
Sbjct: 93 -LPDGYEVILGNGGATAFWDAAAFGLI--DKRSLHLTYGEFSAKFASAVSKNPFVG-EPI 148
Query: 112 VVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPAL 171
++ SD G + I HNET+TGV V E AL
Sbjct: 149 IITSDPGSAPEPQ--TDPSVDV-------IAWAHNETSTGV-----AVAVRRPEGSDDAL 194
Query: 172 FLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALE-ASKTAKSVR- 229
++D S + + E QK + G+ + SP AL A + R
Sbjct: 195 VVIDATSGAGGLPVDIAETDAYYF--APQKNFASDGGLWLAIMSPAALSRIEAIAATGRW 252
Query: 230 --VFFDWKDYIKF------YNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRR 280
F ++ YN TP+I L L +D + G L+ ++R
Sbjct: 253 VPDFLSLPIAVENSLKNQTYN-------TPAIATLALLAEQIDWLVGNGGLDWAVKRTAD 305
Query: 281 LGKATRL 287
+ RL
Sbjct: 306 --SSQRL 310
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* Length = 465 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 4e-08
Identities = 35/224 (15%), Positives = 71/224 (31%), Gaps = 12/224 (5%)
Query: 89 SFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHT--IKAICIVHN 146
+F +++ Q LN + EG + + L I I
Sbjct: 164 AFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGV 223
Query: 147 ETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSL- 205
TG N+ + K D ++ ++ + +WG+D A S K L+
Sbjct: 224 HFYTGQHFNIPAITKAGQA--KGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAG 281
Query: 206 PTGMGIVCASPKALEASK----TAKSVRVFFDWKDYIKFY---NLGTFWPYTPSIQLLYG 258
G+ K K + +K K + F P I L+
Sbjct: 282 AGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCS 341
Query: 259 LRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEE 302
L A+L++ + ++ + ++ L ++ K+ ++
Sbjct: 342 LHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKK 385
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* Length = 390 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 6e-08
Identities = 42/236 (17%), Positives = 67/236 (28%), Gaps = 47/236 (19%)
Query: 81 LSPGDRIISFLIGQFSLL--------WIDQQQRLNFNVDVVE-SDWGEGA-KLDVLASKL 130
GD I+ + R + VLA+ L
Sbjct: 98 WHQGDEIL------LTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHL 151
Query: 131 AADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY--RHPALFLVDGVSSI--CAIDFR 186
T + + + H TG L+++ + + +P LVDG S +DF
Sbjct: 152 GPKT----RLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFS 207
Query: 187 MDEWGID-VALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL-G 244
+D A TG K + P G+G + L + W+
Sbjct: 208 --RLEVDYYAFTG-HKWFAGPAGVGGLYIHGDCLGEINP-----TYVGWRSITYGAKGEP 259
Query: 245 TFW---PY-----TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW 292
T W T + GL AAL L +G + + + W
Sbjct: 260 TGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAIC-----QRSEFLW 310
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 3e-07
Identities = 70/454 (15%), Positives = 122/454 (26%), Gaps = 159/454 (35%)
Query: 4 MYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPF 63
MY ++ L+ V V R L + LLE G
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNV----------SRLQPYLKLRQALLELRPAKNVLIDGVL- 159
Query: 64 LIPTTGTGAWESALT-NTLSPGDRIISFLIGQFSLLWID------------QQQRLNFNV 110
G+G ++ + + F + W++ Q+L + +
Sbjct: 160 -----GSG--KTWVALDVCLSYKVQCKM---DFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 111 D---VVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYR 167
D SD KL + H+I+A ++R+LL
Sbjct: 210 DPNWTSRSDHSSNIKLRI----------HSIQA-----------------ELRRLLKSKP 242
Query: 168 HP-ALFLVDGVSSI---------CAI----------DFRMDEWGIDVALTGSQKALSLPT 207
+ L ++ V + C I DF ++L L+
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 208 GMGI----VCASPKAL--EASKT--------AKSVRVFFD-WKDYIKFYNLGTFWPYTPS 252
+ + P+ L E T A+S+R W D K N T
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-DNWKHVN---CDKLTTI 358
Query: 253 IQL-LYGLRAAL------DL-IFEEGL---ENVIERHRRLGKATRLAVEAWG-------- 293
I+ L L A L +F ++ W
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL-------------IWFDVIKSDVM 405
Query: 294 --LKNCTQK---EEWFSDTVTAV------IVPSHINSSEIVRRAWQRYNLSL-----GLG 337
+ + E+ ++ ++ + N + R YN+ L
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 338 LNKVAGKVFR-IGHLGHLN-----EVMFNFQLLF 365
+ + IGH HL E M F+++F
Sbjct: 466 PPYLDQYFYSHIGH--HLKNIEHPERMTLFRMVF 497
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 367 | |||
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 100.0 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 100.0 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 100.0 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 100.0 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 100.0 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 100.0 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 100.0 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 100.0 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 100.0 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 100.0 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 100.0 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 100.0 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 100.0 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 100.0 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 100.0 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 100.0 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 100.0 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 100.0 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 100.0 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 100.0 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 100.0 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 100.0 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 100.0 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 100.0 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 100.0 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 100.0 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 100.0 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 100.0 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 100.0 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 100.0 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 100.0 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 100.0 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 100.0 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 100.0 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 100.0 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 100.0 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.98 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.98 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.98 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.98 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.98 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.98 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.98 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.98 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.98 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.98 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.98 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.98 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.98 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.98 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.98 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.97 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.97 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.97 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.97 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.97 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.97 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.97 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.97 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.97 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.97 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.97 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.97 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.97 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.97 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.97 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.97 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.97 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.97 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.97 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.97 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.97 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.97 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.97 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.97 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.97 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.97 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.97 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.97 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.97 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.97 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.97 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.97 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.97 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.97 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.97 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.97 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.97 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.97 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.96 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.96 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.96 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.96 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.96 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.96 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.96 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.96 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.96 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.96 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.96 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.96 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.96 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.96 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.96 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.96 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.96 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.96 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.96 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.96 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.96 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.96 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.96 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.96 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.96 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.96 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.96 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.96 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.96 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.96 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.95 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.95 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.95 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.95 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.95 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.95 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.95 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.92 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.95 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.95 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.95 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.95 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.95 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.95 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.95 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.95 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.95 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.95 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.95 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.95 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.95 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.95 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.95 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.95 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.95 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.95 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.95 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.95 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.95 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.94 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.94 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.94 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.94 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.94 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.94 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.94 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.93 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.93 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.93 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.93 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.93 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.93 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.93 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.93 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.93 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.93 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.92 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.92 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.92 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.92 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.92 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.92 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.91 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.91 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.91 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.91 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.91 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.91 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.9 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.9 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.9 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.9 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.9 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.9 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.89 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.89 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.89 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.89 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.89 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.88 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.88 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.88 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.83 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.81 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.69 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.8 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.7 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.66 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.6 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.49 |
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=334.36 Aligned_cols=343 Identities=25% Similarity=0.426 Sum_probs=289.9
Q ss_pred CCCCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCC
Q 017726 6 APGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGD 85 (367)
Q Consensus 6 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd 85 (367)
.+...+++.|||.++++++++++.+....+.++.+.....++++++++++|.+.++.+++++||++++..++.+++.+||
T Consensus 10 ~~~~~~~~~pgp~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~~gd 89 (411)
T 3nnk_A 10 NPPSRLLMGPGPINADPRVLRAMSSQLIGQYDPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIRPGD 89 (411)
T ss_dssp CCCCCEEESSSCCCCCHHHHHHHTSCCCCTTCHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCCTTC
T ss_pred CCccceeecCCCCCCCHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcCCCC
Confidence 45578999999999999999999987666666667788999999999999998766688999999999999999999999
Q ss_pred eEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHh
Q 017726 86 RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDE 165 (367)
Q Consensus 86 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~ 165 (367)
+|++..++|++..+...++..|++++.++.+.++.+|++++++++++ +++++|++++++||||.+.|+++|.++|++
T Consensus 90 ~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~ 166 (411)
T 3nnk_A 90 KVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKR---IRPRLLLTVQGDTSTTMLQPLAELGEICRR 166 (411)
T ss_dssp EEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH---HCCSEEEEESEETTTTEECCCTTHHHHHHH
T ss_pred EEEEecCCchHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhh---CCCeEEEEeCCCCCcceeccHHHHHHHHHH
Confidence 99999999988655577888999999999988888999999999985 267999999999999999999999999999
Q ss_pred cCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCC------------------C
Q 017726 166 YRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAK------------------S 227 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~------------------~ 227 (367)
+|+++|+|++++.+..+++....++|++++|+||++.++.|+|++++++++++++.... .
T Consensus 167 --~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~ 244 (411)
T 3nnk_A 167 --YDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMI 244 (411)
T ss_dssp --HTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCC
T ss_pred --cCCEEEEECCcccCCcccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhcccccccccccccccccCCCC
Confidence 99999999999998888888777899999999999888999999999999988877543 1
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCc
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDT 307 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 307 (367)
...+.+.......+....+..++++...+.++.++++.+.++|+++++++..++++++.+.|+++|+++..+.. .....
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~ 323 (411)
T 3nnk_A 245 YSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAMGLETFGDLK-HKMNN 323 (411)
T ss_dssp SCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGG-GBCSS
T ss_pred cccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeCCCcc-ccccc
Confidence 22233333332222222334667899999999999999988899999999999999999999999888776532 23556
Q ss_pred eEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCC
Q 017726 308 VTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHL 354 (367)
Q Consensus 308 ~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~ 354 (367)
++++.+|++.+..++.+.|.+++||.+++|+.+..++++||++++..
T Consensus 324 ~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~ 370 (411)
T 3nnk_A 324 VLGVVIPQGINGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYN 370 (411)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCc
Confidence 78888877788899999998777999999987767789999975543
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=329.29 Aligned_cols=349 Identities=26% Similarity=0.457 Sum_probs=291.5
Q ss_pred CCCCCCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCC
Q 017726 4 MYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSP 83 (367)
Q Consensus 4 ~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~ 83 (367)
.|.+.+.+++.|+|.++++++.+++.+....+..+.+.+...++++++++++|.+++..+++++|+++++..++.+++.+
T Consensus 6 ~~~~~~~~~~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~~ 85 (416)
T 3isl_A 6 ELCTPLRTIMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIEP 85 (416)
T ss_dssp CCCCCCCEECSSSSCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCCT
T ss_pred ccCcccceeecCCCcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcCC
Confidence 35677889999999999999999999865555555667889999999999999987654558899999999999999999
Q ss_pred CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHH
Q 017726 84 GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLL 163 (367)
Q Consensus 84 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~ 163 (367)
||+|+++.++|++..+...++..|++++.++.+.++.+|++++++++++ +++++|++++++||||.+.|+++|.++|
T Consensus 86 gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~ 162 (416)
T 3isl_A 86 EDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIKK---VKPKIVAMVHGETSTGRIHPLKAIGEAC 162 (416)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH---HCCSEEEEESEETTTTEECCCHHHHHHH
T ss_pred CCEEEEecCCcccHHHHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhh---CCCcEEEEEccCCCCceecCHHHHHHHH
Confidence 9999999999988656677888999999999998888999999999984 2569999999999999999999999999
Q ss_pred HhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCC-----------------
Q 017726 164 DEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAK----------------- 226 (367)
Q Consensus 164 ~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~----------------- 226 (367)
++ +|+++|+|++|+.+..+.+....++|++++|+||++.|+.|+|++++++++++++....
T Consensus 163 ~~--~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~g 240 (416)
T 3isl_A 163 RT--EDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSG 240 (416)
T ss_dssp HH--TTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC------------------
T ss_pred HH--cCCEEEEECCccccCCCcchhhcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchhccC
Confidence 99 99999999999988888888777899999999999888999999999999998887532
Q ss_pred ---CCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCcc
Q 017726 227 ---SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEW 303 (367)
Q Consensus 227 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 303 (367)
....+.+...+........+..++++...+.++.++++.+.++|++++++++.++++++.+.|++.|+++..+.. .
T Consensus 241 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~ 319 (416)
T 3isl_A 241 NRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLRLFGDDS-C 319 (416)
T ss_dssp CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGG-G
T ss_pred CCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeccCcc-c
Confidence 122233333333322233334667899999999999999998899999999999999999999999888877533 2
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHH
Q 017726 304 FSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~ 358 (367)
..+.++++.++++.+..++.+.|.+++||.+.+|..+..++++||+++...+.++
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e 374 (416)
T 3isl_A 320 KMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKE 374 (416)
T ss_dssp BCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHH
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHH
Confidence 4456788888767888999999987779999998876667899999866555444
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=324.57 Aligned_cols=344 Identities=27% Similarity=0.381 Sum_probs=289.0
Q ss_pred CCCCCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCC
Q 017726 5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPG 84 (367)
Q Consensus 5 ~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~g 84 (367)
+...+.+++.|||.++++++++++.+....+..+.+.....+++++++++++.+.++++++++||++++..++.+++.+|
T Consensus 19 ~~~~~~~~~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~~g 98 (393)
T 3kgw_A 19 LSVPTRLLLGPGPSNLAPRVLAAGSLRMIGHMQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLEPG 98 (393)
T ss_dssp CCCCCCEECSSSCCCCCHHHHHHTTCCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCCTT
T ss_pred CCCccceeccCCCCCCCHHHHHHhcccccCcccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCCCC
Confidence 44567899999999999999999998665566666678889999999999999876669999999999999999999999
Q ss_pred CeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHH
Q 017726 85 DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLD 164 (367)
Q Consensus 85 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~ 164 (367)
|+|+++.++|++..+...++..|.+++.++.+.++.+|++++++++++ +++++|++++++||||.+.|+++|.++|+
T Consensus 99 d~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~ 175 (393)
T 3kgw_A 99 DSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQ---HKPVLLFLVHGESSTGVVQPLDGFGELCH 175 (393)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH---HCCSEEEEESEETTTTEECCCTTHHHHHH
T ss_pred CEEEEEeCCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhh---CCCcEEEEeccCCcchhhccHHHHHHHHH
Confidence 999999998887655677888999999999988888999999999985 26799999999999999999999999999
Q ss_pred hcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCC--ceeechHHHHHHhh
Q 017726 165 EYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV--RVFFDWKDYIKFYN 242 (367)
Q Consensus 165 ~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 242 (367)
+ +|+++|+|++|+.+..+++....++|++++|+||+++|+.|+|++++++++++++...... .++.+.......+.
T Consensus 176 ~--~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (393)
T 3kgw_A 176 R--YQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWG 253 (393)
T ss_dssp H--TTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTT
T ss_pred H--cCCEEEEECCccccCcccchhhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhh
Confidence 9 9999999999998887777777789999999999998899999999999999888754332 23333333222221
Q ss_pred ---cCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCH
Q 017726 243 ---LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINS 319 (367)
Q Consensus 243 ---~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (367)
...+..++++...++++.++++.+.+++++++.+++.++++++.+.|+++|+++..+......+.++++.++++.+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (393)
T 3kgw_A 254 CEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTVPAGYNW 333 (393)
T ss_dssp CSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEEEECCTTBCH
T ss_pred hccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEEEeCCCCCCH
Confidence 12234567888888999999999888889999999999999999999999888875544445666778888777788
Q ss_pred HHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCC
Q 017726 320 SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH 353 (367)
Q Consensus 320 ~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~ 353 (367)
.++.++|.+++||.+.+|..+..++++||++++.
T Consensus 334 ~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~ 367 (393)
T 3kgw_A 334 RDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGY 367 (393)
T ss_dssp HHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGG
T ss_pred HHHHHHHHHhCCEEEeCCcccCCCCEEEEEeccc
Confidence 9999999877799999987766778999997564
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=320.14 Aligned_cols=353 Identities=25% Similarity=0.393 Sum_probs=284.1
Q ss_pred CCCCCCCCCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc
Q 017726 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT 80 (367)
Q Consensus 1 ~~~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~ 80 (367)
|+|-.-....|++.++|.++++.+++++.+....+.++.......++++.+++++|.++ +++++|+||++++..++.++
T Consensus 1 ~~fp~~~~~~yl~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-~~v~~t~g~t~a~~~~~~~~ 79 (392)
T 2z9v_A 1 MRYPEHADPVITLTAGPVNAYPEVLRGLGRTVLYDYDPAFQLLYEKVVDKAQKAMRLSN-KPVILHGEPVLGLEAAAASL 79 (392)
T ss_dssp CCCCTTSCCSEECSSSCCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCSS-CCEEESSCTHHHHHHHHHHH
T ss_pred CCcccCCCcceeecCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhCCCC-CEEEEeCCchHHHHHHHHHh
Confidence 45666667899999999999999999999977665555666788999999999999874 45999999999999999998
Q ss_pred CCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHH
Q 017726 81 LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVR 160 (367)
Q Consensus 81 ~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~ 160 (367)
+.+||+|+++.++|++..+...++..|.+++.++.+.++.+|++++++++++. +++++|++++++||||.+.|+++|.
T Consensus 80 ~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~--~~~~~v~~~~~~nptG~~~~l~~i~ 157 (392)
T 2z9v_A 80 ISPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAH--PEITVVSVCHHDTPSGTINPIDAIG 157 (392)
T ss_dssp CCTTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHC--TTCCEEEEESEEGGGTEECCHHHHH
T ss_pred cCCCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcC--CCCcEEEEeccCCCCceeccHHHHH
Confidence 89999999999999886555666778999999999887889999999999642 3679999999999999999999999
Q ss_pred HHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCC-Cc-eeechHHHH
Q 017726 161 KLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS-VR-VFFDWKDYI 238 (367)
Q Consensus 161 ~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~ 238 (367)
++|++ +|+++|+|++|+.+..+++....++|++++|+||++.|+.|+|++++++++++++..... .+ .+.++....
T Consensus 158 ~l~~~--~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~ 235 (392)
T 2z9v_A 158 ALVSA--HGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWE 235 (392)
T ss_dssp HHHHH--TTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCCCSCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGT
T ss_pred HHHHH--cCCeEEEEcccccCCcccccccccceEEEecCcccccCCCceeEEEECHHHHHHhhhccCCCCceeccHHHHH
Confidence 99999 999999999999887766666667899999999999888999999999999887764321 00 112211111
Q ss_pred HHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCC
Q 017726 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHIN 318 (367)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (367)
..+....+..++++...++++.++++.+.+.|++++++++.++++++.+.|+++|+++..+.+....+.+++++++++.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (392)
T 2z9v_A 236 NAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAMGLSVWAASDSIASPTTTAVRTPDGVD 315 (392)
T ss_dssp TTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCTTEEEEECCTTCC
T ss_pred hhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCeeccCCccccCCceEEEECCCCCC
Confidence 11111122356788888888889999988888899999999999999999998888776633222356678888866678
Q ss_pred HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHH
Q 017726 319 SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVM 358 (367)
Q Consensus 319 ~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~ 358 (367)
..++.++|.+++||.+.+|..+..+.++||++++ ..+.++
T Consensus 316 ~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~ 356 (392)
T 2z9v_A 316 EKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIY 356 (392)
T ss_dssp HHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHH
T ss_pred HHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHH
Confidence 8899999987679999988765556789999755 555443
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=317.09 Aligned_cols=342 Identities=30% Similarity=0.464 Sum_probs=282.8
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCC-ceEEecCChhHHHHHHHHccCCCCCeE
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLIPTTGTGAWESALTNTLSPGDRI 87 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~v~~~~ggt~al~~~~~~~~~~gd~v 87 (367)
+.+++.|||.++++++++++.+....+.++...+...++++++++++|.+.+ +++++++||++++. ++.+++.+||+|
T Consensus 2 ~~~~~~~gp~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~v 80 (384)
T 3zrp_A 2 DKLLLHVGPTTIKEDVLVAGLENNVGFTSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLKPNDKI 80 (384)
T ss_dssp ----CCSSCSCCCHHHHHHTTCCSCCTTSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCCTTCEE
T ss_pred CceeccCCCCCCCHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEE
Confidence 4678999999999999999999776666666778899999999999999863 56999999999999 999999999999
Q ss_pred EEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcC
Q 017726 88 ISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYR 167 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~ 167 (367)
+++.++|++..+...++..|.+++.++.+.++.+|++++++++++ .++++|++++++||||.+.|+++|.++|++
T Consensus 81 i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~-- 155 (384)
T 3zrp_A 81 LVVSNGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRK---SEYKLVALTHVETSTGVREPVKDVINKIRK-- 155 (384)
T ss_dssp EEECSSHHHHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHH---SCEEEEEEESEETTTTEECCHHHHHHHHGG--
T ss_pred EEecCCcchHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHh---CCCcEEEEeCCCCCCceECcHHHHHHHHHh--
Confidence 999999988666667788899999999998888999999999985 267999999999999999999999999999
Q ss_pred CCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHh-ccCCCCceeechHHHH---HHhhc
Q 017726 168 HPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEAS-KTAKSVRVFFDWKDYI---KFYNL 243 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~ 243 (367)
+|+++|+|++|+.+..+.+....++|++++|+||+++|+.|+|++++++++++++ .+.....++.+...+. ..++.
T Consensus 156 ~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (384)
T 3zrp_A 156 YVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEE 235 (384)
T ss_dssp GEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHT
T ss_pred cCCEEEEECcccccCccccccccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcc
Confidence 9999999999998888777777789999999999998889999999999998888 5544444444433332 33333
Q ss_pred CCccCC-CCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHH
Q 017726 244 GTFWPY-TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEI 322 (367)
Q Consensus 244 ~~~~~~-~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (367)
+..+++ +++...+.++.++++.+.+.+++++++++.++++++.+.|+++|+++..+.+....+.++++.++. .+..++
T Consensus 236 ~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 314 (384)
T 3zrp_A 236 GKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLEIVARRPESYSNTVTGVILKV-ADPQKV 314 (384)
T ss_dssp TCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSCSSGGGBCSSEEEEECSS-SCHHHH
T ss_pred cCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCeEccCcccccCccEEEEECCC-CCHHHH
Confidence 222233 788888899999999998888999999999999999999999988887764333466677888854 788899
Q ss_pred HHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 323 VRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 323 ~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
.+.|.++ ||.+.+|..... +++||++....+.+|+
T Consensus 315 ~~~l~~~-gi~v~~g~~~~~-~~iRi~~~~~~~~e~i 349 (384)
T 3zrp_A 315 LAGTVNE-GVEFAPGVHPAF-KYFRIGHMGWVTPNDA 349 (384)
T ss_dssp HHHHHTT-TCCCEECCCTTC-CEEEEECCSSCCHHHH
T ss_pred HHHHHHC-CEEEecCCCCCc-CEEEEeccccCCHHHH
Confidence 9999866 999998763222 7899998776665443
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-43 Score=318.70 Aligned_cols=341 Identities=21% Similarity=0.326 Sum_probs=281.4
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCC-ceEEecCChhHHHHHHHHccCCCCCe
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLIPTTGTGAWESALTNTLSPGDR 86 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~v~~~~ggt~al~~~~~~~~~~gd~ 86 (367)
...+++.|||.++|+++++++.+....++++.+.+..+++++++++++|.+.+ +.+++++||++++..++.+++.+||+
T Consensus 18 ~~~~~~~pgp~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~ 97 (376)
T 3f0h_A 18 QGMLNFTVGPVMSSEEVRAIGAEQVPYFRTTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFTKKDK 97 (376)
T ss_dssp SSCEECSSSSCCCCHHHHHHHTSCCCCCSSHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCCTTCC
T ss_pred cCceeecCCCCCCcHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccCCCCe
Confidence 35688999999999999999999766666666778889999999999999754 43455899999999999999999999
Q ss_pred EEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhc
Q 017726 87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY 166 (367)
Q Consensus 87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~ 166 (367)
|++..+++++..+...+...|.+++.++.+.++.+|+++++++++ +++++|++++++||||.+.|+++|.++|++
T Consensus 98 vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~- 172 (376)
T 3f0h_A 98 VLVIDGGSFGHRFVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDN----QNFTGLLVNVDETSTAVLYDTMMIGEFCKK- 172 (376)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTT----SCCCEEEEESEETTTTEECCHHHHHHHHHH-
T ss_pred EEEEeCChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhc----cCceEEEEecccCCcceecCHHHHHHHHHH-
Confidence 999999888866556778889999999998888899999998776 578999999999999999999999999999
Q ss_pred CCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCc
Q 017726 167 RHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTF 246 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (367)
+|+++|+|++++.+..+++....++|++++|+||+++++.|+|++++++++++++.......++.++..+......+.
T Consensus 173 -~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 250 (376)
T 3f0h_A 173 -NNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQ- 250 (376)
T ss_dssp -TTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTC-
T ss_pred -cCCEEEEEcCccccCccccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCC-
Confidence 999999999999988877776667899999999999878999999999999988876554444455444443333221
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHH
Q 017726 247 WPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRR 325 (367)
Q Consensus 247 ~~~~~~~~~~~al~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 325 (367)
++++++...++++.++++++.++ ++++++++..++++++.+.|+++|+++..+. ....++.+. +++.+..++.+.
T Consensus 251 ~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~l~~~ 326 (376)
T 3f0h_A 251 TPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVSES---PANGVTSVH-PTTANAYDIFLK 326 (376)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSS---BBTTEEEEE-ESSSCHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccc---cCceEEEEe-CCCCCHHHHHHH
Confidence 36678888888899999999888 5899999999999999999998887665542 233445454 356788999999
Q ss_pred HHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 326 AWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 326 L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
|.+++||.+++|..+..++++|+++....+.+|+
T Consensus 327 l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i 360 (376)
T 3f0h_A 327 LKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDN 360 (376)
T ss_dssp HHHHSSEECEECCGGGTTTCEEEECCSSCCHHHH
T ss_pred HHHhCCEEEecCccccCCCEEEEecCCCCCHHHH
Confidence 9877799999987656677899998766655443
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-42 Score=315.14 Aligned_cols=353 Identities=29% Similarity=0.424 Sum_probs=282.1
Q ss_pred CCCCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCC
Q 017726 6 APGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGD 85 (367)
Q Consensus 6 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd 85 (367)
..++.|++.+||.++++.+++++.+....++.+.......++++.+++++|.++++++++++||++|+..++.+++.+||
T Consensus 16 ~~~~~~~~~~g~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd 95 (393)
T 2huf_A 16 VTPNKLLMGPGPSNAPQRVLDAMSRPILGHLHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGD 95 (393)
T ss_dssp CCCCCEECSSSCCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCTTC
T ss_pred CCCCeEEecCCCCCCCHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCC
Confidence 34588999999999999999999987665544445678899999999999997654699999999999999999889999
Q ss_pred eEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHh
Q 017726 86 RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDE 165 (367)
Q Consensus 86 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~ 165 (367)
+|+++.++|++..+...++..|.+++.++.+.++.+|++++++++++ .++++|++++++||||.+.|+++|.++|++
T Consensus 96 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~l~~i~~~~~~ 172 (393)
T 2huf_A 96 VILIGHTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLI---HKPSVLFLTQGDSSTGVLQGLEGVGALCHQ 172 (393)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH---HCCSEEEEESEETTTTEECCCTTHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhc---cCCcEEEEEccCCCccccCCHHHHHHHHHH
Confidence 99999999988655556677899999999987788999999999984 156999999999999999999999999999
Q ss_pred cCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCC--CCceeechHHHHHHhhc
Q 017726 166 YRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAK--SVRVFFDWKDYIKFYNL 243 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 243 (367)
+|+++|+|++++++..+.++...++|++++|+||+++|+.|+|++++++++++++.... ...++.+.......+..
T Consensus 173 --~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (393)
T 2huf_A 173 --HNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGC 250 (393)
T ss_dssp --TTCEEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTC
T ss_pred --cCCEEEEEcccccCCCCcchhhcCccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhcc
Confidence 99999999999988776666666799999999999888899999999999988876542 11222222111111110
Q ss_pred ---CCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHH
Q 017726 244 ---GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSS 320 (367)
Q Consensus 244 ---~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (367)
..+..++++...++++.++++.+.++++++++++..++++++.+.|+++|+++..+.. .+.+.+++++++.+.+..
T Consensus 251 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ 329 (393)
T 2huf_A 251 FGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFELYADPK-DRLSTVTTIKVPQGVDWL 329 (393)
T ss_dssp SSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGG-GBCTTEEEEECCTTCCHH
T ss_pred ccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCcc-ccCCcEEEEEcCCCCCHH
Confidence 1223457888888888889998887788999999999999999999998887766432 134557788886567888
Q ss_pred HHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCC-CH--HHHHHhhh
Q 017726 321 EIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHL-NE--VMFNFQLL 364 (367)
Q Consensus 321 ~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~-~~--~~~~~~~l 364 (367)
++.++|.+++||.+.+|..+..+.++||++++.. ++ .+...+.|
T Consensus 330 ~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l 376 (393)
T 2huf_A 330 KAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVF 376 (393)
T ss_dssp HHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHH
Confidence 9999998767999998876555678999985633 33 34444444
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-42 Score=314.20 Aligned_cols=342 Identities=25% Similarity=0.419 Sum_probs=277.0
Q ss_pred CCCCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCC
Q 017726 6 APGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGD 85 (367)
Q Consensus 6 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd 85 (367)
...+.+++.|+|.++++.+.+++.+....++++.+.....++++.+++++|.++++++++++||++++..++.+++.+||
T Consensus 15 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd 94 (396)
T 2ch1_A 15 IIPEKIMMGPGPSNCSKRVLTAMTNTVLSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGD 94 (396)
T ss_dssp CCCCCBCCSSSSCCCCHHHHHHTTSCCCCTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTC
T ss_pred CCCcceeecCCCCCCCHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcCCCC
Confidence 34577999999999999999999987654444444466899999999999998753599999999999999999899999
Q ss_pred eEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHh
Q 017726 86 RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDE 165 (367)
Q Consensus 86 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~ 165 (367)
+|+++.++|+++.+...++..|++++.++.+.++.+|++++++++++. ++++|++++++||||.++|+++|.++|++
T Consensus 95 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~---~~~~v~~~~~~nptG~~~~~~~i~~l~~~ 171 (396)
T 2ch1_A 95 RVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELH---QPKCLFLTHGDSSSGLLQPLEGVGQICHQ 171 (396)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHH---CCSEEEEESEETTTTEECCCTTHHHHHHH
T ss_pred eEEEEcCCcccHHHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhC---CCCEEEEECCCCCCceecCHHHHHHHHHH
Confidence 999999999887544577889999999999888889999999999841 56999999999999999999999999999
Q ss_pred cCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCC--CCceeechHHHHHHhhc
Q 017726 166 YRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAK--SVRVFFDWKDYIKFYNL 243 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 243 (367)
+|+++|+|++|+++..++++...++|++++|+||++.++.|+|+++++++.++.+.... ...++.+...+...+..
T Consensus 172 --~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (396)
T 2ch1_A 172 --HDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGC 249 (396)
T ss_dssp --TTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTC
T ss_pred --cCCEEEEEccccccCCccchhhcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEechHHHHHhhhh
Confidence 99999999999988777777777789999999999988999999999999888775432 12222232222221111
Q ss_pred ---CCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHH
Q 017726 244 ---GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSS 320 (367)
Q Consensus 244 ---~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (367)
..+..++++...+.++.++++.+.+.+++++++++.++++++.+.|+++|+++..+......+.+++++++.+.+..
T Consensus 250 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (396)
T 2ch1_A 250 YDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVDWW 329 (396)
T ss_dssp SSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCHH
T ss_pred hcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCeeccCCccccCCceEEEEcCCCCCHH
Confidence 12235678888888888899887777889999999999999999999988888765432344557888886677889
Q ss_pred HHHHHHHhhCCeEEccCCCCCCCcEEEEeecC
Q 017726 321 EIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352 (367)
Q Consensus 321 ~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~ 352 (367)
++.++|.+++||.+.+|..+..++++||++++
T Consensus 330 ~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~ 361 (396)
T 2ch1_A 330 KVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMG 361 (396)
T ss_dssp HHHHHHHHHHCBCCBCCCGGGTTTEEEEECCG
T ss_pred HHHHHHHHhCCEEEecCccccCCCEEEEECCC
Confidence 99999987679999988765567789999855
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-42 Score=310.65 Aligned_cols=337 Identities=26% Similarity=0.377 Sum_probs=273.3
Q ss_pred ccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHHccCCCCCeEEE
Q 017726 11 HLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIIS 89 (367)
Q Consensus 11 ~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~ 89 (367)
++|.|||.++++.+++++.+....++++...+...++++++++++|.+ +++++++|+||++|+..++.+++. |+|++
T Consensus 2 ~~~~~gp~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~ 79 (353)
T 2yrr_A 2 LLLTPGPTPIPERVQKALLRPMRGHLDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLDR--GPVLV 79 (353)
T ss_dssp EECSSSSCCCCHHHHGGGGSCCCCTTCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEE
T ss_pred ccCCCCCCCCCHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEE
Confidence 689999999999999999998766666666677899999999999986 345699999999999999988776 88999
Q ss_pred EeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCC
Q 017726 90 FLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHP 169 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~ 169 (367)
+.++|++..+...++..|++++.++.+.++.+|+++++++++++ ++++|++++++||||.+.|+++|.++|++ +|
T Consensus 80 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~---~~~~v~~~~~~nptG~~~~~~~i~~l~~~--~~ 154 (353)
T 2yrr_A 80 LVNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRR---RYRMVALVHGETSTGVLNPAEAIGALAKE--AG 154 (353)
T ss_dssp EECSHHHHHHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHS---CCSEEEEESEETTTTEECCHHHHHHHHHH--HT
T ss_pred EcCCCchHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhC---CCCEEEEEccCCCcceecCHHHHHHHHHH--cC
Confidence 99989886455667888999999999888889999999999851 56999999999999999999999999999 99
Q ss_pred cEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCC
Q 017726 170 ALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPY 249 (367)
Q Consensus 170 ~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (367)
+++|+|++|+++..+.+....++|++++|+||++.|++|+|++++++++++++.. ....+.+........+ ..+..+
T Consensus 155 ~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~-~~~~~~ 231 (353)
T 2yrr_A 155 ALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTG--KRGWYLDLARVAEHWE-RGGYHH 231 (353)
T ss_dssp CEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCC--CSCSTTCHHHHHHHHT-TCCCSS
T ss_pred CeEEEEcCcccccccccccccCceEEEecCcccccCCCceEEEEECHHHHHHhcc--CCCccccHHHHhhhhh-cCCCCC
Confidence 9999999998877666655557899999999999888899999999999887752 1122233222111111 122355
Q ss_pred CCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhh
Q 017726 250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQR 329 (367)
Q Consensus 250 ~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 329 (367)
+++...+.++.++++.+.+.|++++++++.++++++.+.|+++|+++..+. ...+.+++++++++.+..++.+.|.++
T Consensus 232 ~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (353)
T 2yrr_A 232 TTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARGFRPYPKA--SPLPTVLVVRPPEGVDADRLVRALYAE 309 (353)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEESCSS--SBCTTEEEEECCTTCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCccccCc--cCCCeEEEEECCCCCCHHHHHHHHHHC
Confidence 788888888888999988888999999999999999999998888776642 135667788886677888999999766
Q ss_pred CCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 330 YNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 330 ~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
||.+.+|..+..++++|++++...+.+|+.
T Consensus 310 -gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 339 (353)
T 2yrr_A 310 -GVAVAGGIGPTRGQVLRLGLMGEGARREAY 339 (353)
T ss_dssp -TEECEECCGGGTTTCEEEECSGGGSCHHHH
T ss_pred -CEEEeCCccccCCCeEEEecCccCCHHHHH
Confidence 999998876655678999986655544443
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=310.01 Aligned_cols=346 Identities=29% Similarity=0.463 Sum_probs=282.9
Q ss_pred CCCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCe
Q 017726 7 PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR 86 (367)
Q Consensus 7 ~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~ 86 (367)
..+.|++.++|.++++++.+++.+....++++......+++++.+++++|.+.++++++++||++|+..++.+++.+||+
T Consensus 18 ~~~~~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~~gd~ 97 (386)
T 2dr1_A 18 KPKYKLFTAGPVACFPEVLEIMKVQMFSHRSKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVSKGGK 97 (386)
T ss_dssp SCCSEECCSSSCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSCTTCE
T ss_pred CccceeecCCCcCCcHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhcCCCe
Confidence 34689999999999999999999876555444456788999999999999973456999999999999999998999999
Q ss_pred EEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhc
Q 017726 87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY 166 (367)
Q Consensus 87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~ 166 (367)
|+++.++|++..+...++..|++++.++.+.++.+|++++++++++. +++++|++++++||||.+.|+++|.++|++
T Consensus 98 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~--~~~~~v~~~~~~nptG~~~~l~~i~~l~~~- 174 (386)
T 2dr1_A 98 VLVTIIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKN--PDVEAVTITYNETSTGVLNPLPELAKVAKE- 174 (386)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHC--TTCCEEEEESEETTTTEECCHHHHHHHHHH-
T ss_pred EEEEcCCchhHHHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcC--CCCcEEEEEeecCCcchhCCHHHHHHHHHH-
Confidence 99999998875455677889999999999888889999999999642 468999999999999999999999999999
Q ss_pred CCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhh-cCC
Q 017726 167 RHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYN-LGT 245 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 245 (367)
+|+++|+|++|+.+..+.+....++|++++|+||+++++.|+|++++++++++++.......++.++......+. .+
T Consensus 175 -~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 252 (386)
T 2dr1_A 175 -HDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKE- 252 (386)
T ss_dssp -TTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTSTTCCCSSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHS-
T ss_pred -cCCeEEEEccccccCccccccccCCcEEEEeccccccCCCceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCC-
Confidence 999999999999887766666668899999999999877789999999999888765333334444433322222 11
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHH
Q 017726 246 FWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVR 324 (367)
Q Consensus 246 ~~~~~~~~~~~~al~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 324 (367)
+..++++...+.++.++++.+.+. ++++++++++++++++.+.|+++|+++..+.. ...+.++++.++.+.+..++.+
T Consensus 253 ~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 331 (386)
T 2dr1_A 253 STPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEPG-HESPTITAVLTPPGIKGDEVYE 331 (386)
T ss_dssp SCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCTT-CBCSSEEEEECCTTCCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCcc-ccCCceEEEEcCCCCCHHHHHH
Confidence 124568888888888899988887 78999999999999999999998887776532 2356678898876678889999
Q ss_pred HHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 325 RAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 325 ~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
+|.++ ||.+.+|..+..+.++||++....+.+++
T Consensus 332 ~l~~~-gi~v~~~~~~~~~~~iRi~~~~~~~~~~i 365 (386)
T 2dr1_A 332 AMRKR-GFELAKGYGSVKEKTFRIGHMGYMKFEDI 365 (386)
T ss_dssp HHHHT-TEECEECCGGGTTTEEEEECCSSCCHHHH
T ss_pred HHHHC-CeEEecCccccCCCEEEEECCCCCCHHHH
Confidence 99877 99999987655567899998865655544
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=307.26 Aligned_cols=329 Identities=25% Similarity=0.401 Sum_probs=270.0
Q ss_pred ccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 11 HLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 11 ~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
+++.|||.++++.+++++.+....+.++...+...++++.+++++|.++ +++++++||++|+..++.+++.+||+|+++
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~ 81 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQLHHRTEAAREVFLKARGLLREAFRTEG-EVLILTGSGTLAMEALVKNLFAPGERVLVP 81 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCCCTTSHHHHHHHHHHHHHHHHHHTCSS-EEEEEESCHHHHHHHHHHHHCCTTCEEEEE
T ss_pred ccccCCCCCCCHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHhCCCC-ceEEEcCchHHHHHHHHHhccCCCCeEEEE
Confidence 7899999999999999999987666666666788999999999999975 569999999999999999989999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCC--
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRH-- 168 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~-- 168 (367)
.++|++..+...++..|.+++.++.+.++.+|++++++ + ++++|++++++||||.+.|+++|.++|++ +
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~---~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~--~~~ 152 (352)
T 1iug_A 82 VYGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVAK---E----GYAGLLLVHSETSTGALADLPALARAFKE--KNP 152 (352)
T ss_dssp ECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTSCC---S----SCSEEEEESEETTTTEECCHHHHHHHHHH--HCT
T ss_pred eCCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHhc---c----CCcEEEEEEecCCcceecCHHHHHHHHHh--hCC
Confidence 99999875445667789999999998777789888766 2 57999999999999999999999999999 7
Q ss_pred CcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccC
Q 017726 169 PALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP 248 (367)
Q Consensus 169 ~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (367)
|+++|+|++|+++..+++....++|++++|+||++.++.|+|+++++++.++++.. ..++.++.........+ +..
T Consensus 153 ~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~ 228 (352)
T 1iug_A 153 EGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKP---RGYYLDLARELKAQKEG-ESA 228 (352)
T ss_dssp TCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCC---CSSTTCHHHHHHHHTTT-CCS
T ss_pred CCEEEEECCccccCcceeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhhC---CCceeeHHHHHhhcccC-CCC
Confidence 99999999999887766666567899999999999888899999999998877654 23333333222222222 235
Q ss_pred CCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHh
Q 017726 249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQ 328 (367)
Q Consensus 249 ~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 328 (367)
++++...+.++.++++.+.+. +++++++++++++++.+.|+++|+++..+. ..+.+++++++++.+..++.++|.+
T Consensus 229 ~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~ 304 (352)
T 1iug_A 229 WTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEGGLRPVPKR---FSPAVAAFYLPEGVPYARVKEAFAQ 304 (352)
T ss_dssp SCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHTTCEESCSS---BCTTCEEEECCTTCCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCcccccc---cCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 678888888888888887666 888999999999999999999888776642 2556788888656788899999976
Q ss_pred hCCeEEccCCCCCCCcEEEEeecCCCCHHH
Q 017726 329 RYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 329 ~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~ 358 (367)
+ ||.+.+|..+..++++||++....+.++
T Consensus 305 ~-gi~v~~~~~~~~~~~iRi~~~~~~~~~~ 333 (352)
T 1iug_A 305 R-GAVIAGGQGPLKGKVFRLSLMGAYDRYE 333 (352)
T ss_dssp T-TEECEECCGGGTTTEEEECCCSSCCHHH
T ss_pred C-CEEEEeCCCccCCCEEEEEccccCCHHH
Confidence 6 9999988755556789999876555443
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-41 Score=307.85 Aligned_cols=351 Identities=30% Similarity=0.436 Sum_probs=278.9
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeE
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRI 87 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~v 87 (367)
.+.|++.++|.++++++++++.+....+.++...+..+++++.+++++|.++++++++++||++|+..++.+++.+||+|
T Consensus 33 ~~~~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~~gd~V 112 (393)
T 1vjo_A 33 PSRLLLGPGPSNAHPSVLQAMNVSPVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVV 112 (393)
T ss_dssp CCCEECSSSCCCCCHHHHHHHSSCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEE
T ss_pred ccceeccCCCCCCCHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccCCCCEE
Confidence 36799999999999999999999765544444557788999999999999754259999999999999999989999999
Q ss_pred EEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcC
Q 017726 88 ISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYR 167 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~ 167 (367)
+++.++|++..+...++..|++++.++.+.++.+|++++++++++. ++++|++++++||||.+.|+++|.++|++
T Consensus 113 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~---~~~~v~~~~~~nptG~~~~l~~i~~l~~~-- 187 (393)
T 1vjo_A 113 LIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETH---RPAILALVHAETSTGARQPLEGVGELCRE-- 187 (393)
T ss_dssp EEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH---CCSEEEEESEETTTTEECCCTTHHHHHHH--
T ss_pred EEEcCChhHHHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhhC---CceEEEEeccCCCcceeccHHHHHHHHHH--
Confidence 9999998874455667888999999999888889999999999841 56899999999999999999999999999
Q ss_pred CCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCC--CCceeechHHHHHHhhcCC
Q 017726 168 HPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAK--SVRVFFDWKDYIKFYNLGT 245 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 245 (367)
+|+++|+|++|+++..++++...++|++++|+||+++++.|+|++++++++++++.... ...++.+.. +...+....
T Consensus 188 ~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 266 (393)
T 1vjo_A 188 FGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMN-LLGKYWGSE 266 (393)
T ss_dssp HTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHH-HHHHHHSTT
T ss_pred cCCEEEEECCccccCcCCcccccCccEEEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCceecCcH-hhhhhhccC
Confidence 99999999999988777777667889999999999988888999999999988775321 111222211 111111111
Q ss_pred ccCC-CCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHH
Q 017726 246 FWPY-TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVR 324 (367)
Q Consensus 246 ~~~~-~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 324 (367)
.+.+ +++...+.++.++++.+.+.+++++++++.++++++.+.|+++|+++..+.. .....++++.++.+.+..++.+
T Consensus 267 ~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 345 (393)
T 1vjo_A 267 RVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKE-YRLPTLTTVCIPDGVDGKAVAR 345 (393)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGG-GBCSSEEEEECCTTCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcCCcccCCcc-ccCCcEEEEEcCCCCCHHHHHH
Confidence 1233 6888888888999998877778999999999999999999998888776532 2344577888866778889999
Q ss_pred HHHhhCCeEEccCCCCCCCcEEEEeecCCCC-H--HHHHHhhhh
Q 017726 325 RAWQRYNLSLGLGLNKVAGKVFRIGHLGHLN-E--VMFNFQLLF 365 (367)
Q Consensus 325 ~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~-~--~~~~~~~l~ 365 (367)
.|.+++||.+.+|..+..++++||++.+... + .+...++|.
T Consensus 346 ~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~ 389 (393)
T 1vjo_A 346 RLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALE 389 (393)
T ss_dssp HHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHH
T ss_pred HHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHH
Confidence 9987679999998766567889999655332 2 344444443
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=308.36 Aligned_cols=341 Identities=20% Similarity=0.269 Sum_probs=276.6
Q ss_pred CcccccCCCCCChHHHHHHH----ccCC--CCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC
Q 017726 9 KNHLFVPGPVHIPDQVIRAM----NRNN--EDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS 82 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~----~~~~--~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~ 82 (367)
+.++|.|||.++|+++++++ .+.. ..++++.+.+..+++++.+++++|.++++++++++|+++|+..++.++..
T Consensus 4 ~~~~~~p~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~ 83 (362)
T 3ffr_A 4 NKIYFTPGPSELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVE 83 (362)
T ss_dssp CCEEECSSSCCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCS
T ss_pred cceeccCCCcCCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccC
Confidence 57899999999999999444 4433 23455566788899999999999997666799999999999999999887
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHH
Q 017726 83 PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKL 162 (367)
Q Consensus 83 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~ 162 (367)
+ .+++..+++++..+...++..|++++.++.+.++.+|+++++ ++ +++|+|++++++||||.+.|+++|.++
T Consensus 84 ~--~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~--~~----~~~~~v~~~~~~nptG~~~~l~~i~~l 155 (362)
T 3ffr_A 84 K--KSFHCVNGSFSKRFYEFAGELGREAYKEEAAFGKGFYPADIT--VP----ADAEIICLTHNETSSGVSMPVEDINTF 155 (362)
T ss_dssp S--EEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCGGGCC--CC----TTCCEEEEESEETTTTEECCHHHHTTS
T ss_pred C--cEEEEcCcHHHHHHHHHHHHhCCCeEEEecCCCCCCCHHHHh--cc----CCccEEEEEcCCCCcceeCCHHHHHHH
Confidence 7 667777778886565677888999999999888889999998 44 578999999999999999999999999
Q ss_pred HHhcCC-CcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCC----CceeechHHH
Q 017726 163 LDEYRH-PALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS----VRVFFDWKDY 237 (367)
Q Consensus 163 ~~~~~~-~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 237 (367)
|++ + |+++++|++|+.+..+.+... +|++++|+||++++++|+|++++++++++++..... ...++++...
T Consensus 156 a~~--~p~~~li~D~a~~~~~~~~~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~ 231 (362)
T 3ffr_A 156 RDK--NKDALIFVDAVSSLPYPKFDWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSM 231 (362)
T ss_dssp GGG--STTSEEEEECTTTTTSSCCCTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHH
T ss_pred HHh--CCCCEEEEecccccCCcccChhH--CcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCCCCcccccHHHH
Confidence 999 9 999999999998887766654 899999999999879999999999999887765432 2333444444
Q ss_pred HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCC
Q 017726 238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSH 316 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 316 (367)
....+.+ ...++++...+.++.++++.+.+.|+++++++..++++++.+.|+++ |+++..+.+......++++.+++
T Consensus 232 ~~~~~~~-~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~- 309 (362)
T 3ffr_A 232 LEKARVN-QTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM- 309 (362)
T ss_dssp HHHHTTT-CCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS-
T ss_pred HHHhhcC-CCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC-
Confidence 4433332 23667899888999999998888889999999999999999999998 88887754444566788888864
Q ss_pred CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH--HHhhhh
Q 017726 317 INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF--NFQLLF 365 (367)
Q Consensus 317 ~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~--~~~~l~ 365 (367)
+..++.+.|.++ ||.+.+|..+..++++||++....+++++ ..++|+
T Consensus 310 -~~~~~~~~l~~~-gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~ 358 (362)
T 3ffr_A 310 -LPGEINKILEPF-DMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLK 358 (362)
T ss_dssp -CHHHHHHHHGGG-TEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHC-CeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 788999999877 99999988776778999998776655443 344443
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-40 Score=296.41 Aligned_cols=327 Identities=16% Similarity=0.135 Sum_probs=261.9
Q ss_pred CCCCCcccccCCCCCChHHHHHHHccCCC------------CCCCCcHHHHHHHHHHHHHHHhcCCCCceEEe-cCChhH
Q 017726 5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNE------------DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLI-PTTGTG 71 (367)
Q Consensus 5 ~~~~~~~~~~~~p~~~~~~v~~a~~~~~~------------~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~-~~ggt~ 71 (367)
.|+.+.++|.|||+++|++|++++.+... .|++..+.+..+++|+.+++++|++++++|+| |+|||+
T Consensus 1 ~~~~~~~~f~pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~ 80 (361)
T 3m5u_A 1 SNAMRKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASL 80 (361)
T ss_dssp ---CCCEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHH
T ss_pred CCccceEeecCCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHH
Confidence 36789999999999999999999998764 35556678999999999999999986656888 999999
Q ss_pred HHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCC--CCHHHHHHHHhccCCCCccEEEEEecCCC
Q 017726 72 AWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG--AKLDVLASKLAADTAHTIKAICIVHNETA 149 (367)
Q Consensus 72 al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~--~d~e~l~~~i~~~~~~~~~lv~~~~~~n~ 149 (367)
++++++.+++ +||++++...++++++|...++..|+++..++.+.++. ++++. + ++ +++++|.+++.+|.
T Consensus 81 a~n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~-~--l~----~~t~lv~~~~~e~~ 152 (361)
T 3m5u_A 81 QFAMIPMNLA-LNGVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNFDHIPRV-E--FS----DNADYAYICSNNTI 152 (361)
T ss_dssp HHHHHHHHHC-CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTSCSCCCC-C--CC----TTSSEEEEESEETT
T ss_pred HHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCCCcCChh-h--cC----CCCCEEEEeCCCCC
Confidence 9999999888 88988766677888888788888999999999987764 56666 3 65 57799999999999
Q ss_pred ccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCc
Q 017726 150 TGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR 229 (367)
Q Consensus 150 tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~ 229 (367)
||++.|. +++ +|+++++|++++++..++|+.. +|++++|+||++ ||+|+|++++++++.+++.+...+
T Consensus 153 tG~~~~~-----i~~---~~~~~~vD~~q~~g~~~id~~~--~d~~~~s~~K~~-gp~G~g~l~~~~~~~~~~~~~~~p- 220 (361)
T 3m5u_A 153 YGTQYQN-----YPK---TKTPLIVDASSDFFSRKVDFSN--IALFYGGVQKNA-GISGLSCIFIRKDMLERSKNKQIP- 220 (361)
T ss_dssp TTEECSS-----CCC---CSSCEEEECGGGTTSSCCCCTT--EEEEEEETTTTS-SCTTCEEEEEEHHHHHHHHTCCCC-
T ss_pred cceeCCc-----ccc---cCCEEEEEcccccCCCCCCccc--CCEEEEechhcc-CCCccEEEEEcHHHHhhhcCCCCC-
Confidence 9999772 343 5999999999999999999984 799999999999 799999999999998888752222
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHcC-C-ccccCCCccCCC
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWG-L-KNCTQKEEWFSD 306 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g-~-~~~~~~~~~~~~ 306 (367)
.+.++..... .+ ..++|+++..++++.++++++.++ |++++.++.+++++++++.|++++ + ....+ +..++.
T Consensus 221 ~~~~~~~~~~---~~-~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~-~~~rs~ 295 (361)
T 3m5u_A 221 SMLNYLTHAE---NQ-SLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHAD-KKDRSL 295 (361)
T ss_dssp GGGCHHHHHH---TT-TCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSC-GGGBCS
T ss_pred ceeehHHHhh---cC-CCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCC-HHHcCC
Confidence 2344333221 12 235789999999999999999999 899999999999999999999985 5 44332 334666
Q ss_pred ceEEEEcCC--CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 307 TVTAVIVPS--HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 307 ~~~~~~~~~--~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
.++.|.+++ +.+ .++.+.|. ++||.++.|.... +.+|+|++++++.+|++
T Consensus 296 ~ivsf~~~~~~~~~-~~~~~~L~-~~gI~~~~g~~~~--g~iRiS~~~~~t~edId 347 (361)
T 3m5u_A 296 MNVSFNIAKNKDLE-PLFVKEAE-EAGMIGLKGHRIL--GGIRASIYNALNLDQVK 347 (361)
T ss_dssp SEEEEEESSCTTHH-HHHHHHHH-HTTEECCBCCTTT--CSEEEECCTTSCHHHHH
T ss_pred eEEEEECCCchhhh-HHHHHHHH-HCCCEEecCCCcc--CeEEEEccCCCCHHHHH
Confidence 789999864 233 47777775 5599998876543 34999999887766554
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=297.19 Aligned_cols=352 Identities=26% Similarity=0.450 Sum_probs=272.7
Q ss_pred CCCCCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCC---CCceEEecCChhHHHHHHHHccC
Q 017726 5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTT---SGTPFLIPTTGTGAWESALTNTL 81 (367)
Q Consensus 5 ~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~v~~~~ggt~al~~~~~~~~ 81 (367)
|-+.+.++|.|||.++++++++++.+....++++.......++++.++++++.. +++++++++||++++..++.++.
T Consensus 1 ~~~~~~~~~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~ 80 (385)
T 2bkw_A 1 MTKSVDTLLIPGPIILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFI 80 (385)
T ss_dssp --CCCCEECSSSSCCCCHHHHHTTSCCCCCTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHS
T ss_pred CCCccceeecCCCcCchHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHh
Confidence 335677999999999999999999997665555555567788999999999875 23569999999999999999887
Q ss_pred ---CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC-CCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHH
Q 017726 82 ---SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES-DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLS 157 (367)
Q Consensus 82 ---~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~ 157 (367)
.+||+|+++.+++++..+...++..|++++.++. +.++.+|++++++++++ .++++|++++++||||.+.|++
T Consensus 81 ~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~l~ 157 (385)
T 2bkw_A 81 LSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ---NSYGAVTVTHVDTSTAVLSDLK 157 (385)
T ss_dssp CTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH---SCCSEEEEESEETTTTEECCHH
T ss_pred ccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhc---CCCCEEEEEccCCCcCeEcCHH
Confidence 8999999887766665444567788999999998 77788999999999985 2579999999999999999999
Q ss_pred HHHHHHHhcCC--CcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHH-HhccC---CCCcee
Q 017726 158 KVRKLLDEYRH--PALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALE-ASKTA---KSVRVF 231 (367)
Q Consensus 158 ~i~~~~~~~~~--~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~-~~~~~---~~~~~~ 231 (367)
+|.++|++ + |+++|+|++|+.+..++++...++|++++|+||+++|+.|+|+++++++.++ ++... ....++
T Consensus 158 ~i~~~~~~--~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~ 235 (385)
T 2bkw_A 158 AISQAIKQ--TSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYF 235 (385)
T ss_dssp HHHHHHHH--HCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCST
T ss_pred HHHHHHHh--hCCCCEEEEECccccCCccccccccCceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCCCcee
Confidence 99999999 7 9999999999988777676666889999999999988899999999999887 66320 111122
Q ss_pred ech---HHHHHHhhcCC-ccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH-HHcCCccccCCCcc-CC
Q 017726 232 FDW---KDYIKFYNLGT-FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAV-EAWGLKNCTQKEEW-FS 305 (367)
Q Consensus 232 ~~~---~~~~~~~~~~~-~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L-~~~g~~~~~~~~~~-~~ 305 (367)
.+. .....+++.++ ...++++...++++.++++.+.+.|+++++++++++++++.+.| +++|+++..+.+.. ..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~ 315 (385)
T 2bkw_A 236 SSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSA 315 (385)
T ss_dssp TCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBC
T ss_pred ecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhcCceecccCcccccC
Confidence 221 11122333321 22457888888889999999888888899999999999999999 77788776543222 34
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC-CCCcEEEEe-ec-----CCCCHHHHHHhhhh
Q 017726 306 DTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK-VAGKVFRIG-HL-----GHLNEVMFNFQLLF 365 (367)
Q Consensus 306 ~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~-~~~~~iRi~-~~-----~~~~~~~~~~~~l~ 365 (367)
+.++++.+++ ..++.+.|.+ +||.+.+|..+ ....++||+ +. ...++.+...+.|+
T Consensus 316 ~~~~~~~~~~---~~~~~~~l~~-~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~ 378 (385)
T 2bkw_A 316 HGLTAVYVAD---PPDVIAFLKS-HGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIK 378 (385)
T ss_dssp SSCEEEECSC---HHHHHHHHHH-TTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHH
T ss_pred CceEEEecCC---HHHHHHHHHH-CCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHH
Confidence 5678888853 7789999965 59999988653 235679999 32 24556565555554
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-39 Score=291.26 Aligned_cols=342 Identities=21% Similarity=0.301 Sum_probs=268.8
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCCCCCcHH-HHHHHHHHHHHHHhcCCC-CceEEecCChhHHHHHHHHccCCCCCe
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVP-ALTKTLLEDIKKIFKTTS-GTPFLIPTTGTGAWESALTNTLSPGDR 86 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~~-~~~v~~~~ggt~al~~~~~~~~~~gd~ 86 (367)
+.+++.+||.++++++++++.+... ++++.+. ....++++.+++++|.+. .+++++++||++|+..++.+++.+||+
T Consensus 4 ~~~~~~~gp~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~ 82 (366)
T 1m32_A 4 NYLLLTPGPLTTSRTVKEAMLFDSC-TWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDK 82 (366)
T ss_dssp -CEECSSSSCCCCHHHHHTTCCCCC-TTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCC
T ss_pred ccccccCCCcCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhcCCCCe
Confidence 4689999999999999999998642 4333344 678899999999999432 246999999999999999998899999
Q ss_pred EEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhc
Q 017726 87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY 166 (367)
Q Consensus 87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~ 166 (367)
|++..+.+|+..+...++..|++++.++.+.++.+|+++++++++++ +++++|++++++||||.++|+++|.++|++
T Consensus 83 vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~--~~~~~v~~~~~~nptG~~~~l~~i~~l~~~- 159 (366)
T 1m32_A 83 VLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNAD--PTISHIAMVHSETTTGMLNPIDEVGALAHR- 159 (366)
T ss_dssp EEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHC--TTCCEEEEESEETTTTEECCHHHHHHHHHH-
T ss_pred EEEEeCCCccHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcC--CCeEEEEEecccCCcceecCHHHHHHHHHH-
Confidence 98887666654444667788999999999888889999999999864 257999999999999999999999999999
Q ss_pred CCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcC-C
Q 017726 167 RHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLG-T 245 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 245 (367)
+|+++|+|++|+.+..++++...++|++++|+||+++++.|+|++++++++++++.... ..++.+.......+... .
T Consensus 160 -~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 237 (366)
T 1m32_A 160 -YGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHS-RSLSLDLYAQWRCMEDNHG 237 (366)
T ss_dssp -HTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCC-SCSTTCHHHHHHHHHHTTT
T ss_pred -cCCEEEEECCccccCcCccccccCccEEEecCcccccCCCceEEEEECHHHHHhhcCCC-CCccccHHHHHhhhcccCC
Confidence 99999999999988777666666789999999999988888999999999887765421 12222221111111110 1
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC--CCCHHHH
Q 017726 246 FWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS--HINSSEI 322 (367)
Q Consensus 246 ~~~~~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l 322 (367)
...++++...++++.++++.+.+.| +++++++++++++++.+.|+++|+++..+.. ...+.++++.+++ +.+..++
T Consensus 238 ~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 316 (366)
T 1m32_A 238 KWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDE-LHSPIITAFYSPEDPQYRFSEF 316 (366)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGG-GBCSSEEEEECCCCTTCCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHCCCeeccCch-hcCceEEEEEcCccCCCCHHHH
Confidence 1135788888888999999988887 8899999999999999999998877765421 1355678888865 6678899
Q ss_pred HHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 323 VRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 323 ~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
.+.|.++ ||.+.+|..+ .++++|+++....+++++
T Consensus 317 ~~~l~~~-gi~v~~~~~~-~~~~iRi~~~~~~~~~~i 351 (366)
T 1m32_A 317 YRRLKEQ-GFVIYPGKVS-QSDCFRIGNIGEVYAADI 351 (366)
T ss_dssp HHHHHHT-TEECEECCCS-SSCEEEEECCSSCCHHHH
T ss_pred HHHHHHC-CEEEECCcCC-CCCEEEEecCCCCCHHHH
Confidence 9999766 9999987654 457899998766554443
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=307.63 Aligned_cols=327 Identities=13% Similarity=0.154 Sum_probs=252.3
Q ss_pred CcccccCCCCCChHHHHHHHccCCC------------CCCCCcHHHHHHHHHHHHHHHhcCCCCceEEe-cCChhHHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNE------------DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLI-PTTGTGAWES 75 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~------------~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~-~~ggt~al~~ 75 (367)
++|+|.|||+++|++|++++.++.. .+++..+.+..+++|+.+++++|++++++|+| |+|+|+++++
T Consensus 27 ~~yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ 106 (386)
T 3qm2_A 27 QVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAG 106 (386)
T ss_dssp CCEECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHH
T ss_pred cCccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHH
Confidence 6899999999999999999998652 24455667788999999999999976556888 6899999999
Q ss_pred HHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCC--CCCC-CCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 76 ALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESD--WGEG-AKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 76 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~-~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
++.+++.+||++++...++++.+|...++..| ++..++.+ .++. +++++++.+++ +++++|++++.+|.||+
T Consensus 107 ai~~l~~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~----~~t~lV~~~h~et~tG~ 181 (386)
T 3qm2_A 107 VPLNLLGDKTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLS----DNAAYLHYCPNETIDGI 181 (386)
T ss_dssp HHHHHCTTCCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCC----TTCSCEEECSEETTTTE
T ss_pred HHHhccCCCCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcC----CCCcEEEEECCcCCcCE
Confidence 99998999999998888899988888888889 89999987 4554 78888877776 57799999999999999
Q ss_pred c-ccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCcee
Q 017726 153 T-NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF 231 (367)
Q Consensus 153 ~-~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~ 231 (367)
+ .|+++|. +|+++++|++|+++..++|+.+++ ++++|+||++ ||+|+|++++++++.+++.+.. + .+
T Consensus 182 ~i~pi~~i~-------~g~~~~vDa~qs~g~~pidv~~~~--~~~~s~hK~l-GP~G~g~l~v~~~~~~~~~~~~-p-~~ 249 (386)
T 3qm2_A 182 AIDETPDFG-------PEVVVTADFSSTILSAPLDVSRYG--VIYAGAQKNI-GPAGLTLVIVREDLLGKAHESC-P-SI 249 (386)
T ss_dssp ECCCCCCCC-------TTCCEEEECTTTTTSSCCCGGGCS--EEEEETTTTT-CCTTEEEEEEEGGGCSCCCTTS-C-GG
T ss_pred ecCchhhhc-------CCCEEEEEcccccCCCCCCccccC--EEEEeccccc-CCCccEEEEECHHHHhhhcccC-C-cH
Confidence 6 7888773 689999999999999999998765 6779999999 7999999999999876665432 1 12
Q ss_pred echHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEE
Q 017726 232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTA 310 (367)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 310 (367)
+++.... +.+ ..++|+++..++++.+|++++.++ |++++.++.+++++++++.|+++|+.....++..++..++.
T Consensus 250 ~~~~~~~---~~~-~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~iv~ 325 (386)
T 3qm2_A 250 LDYTVLN---DND-SMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVAQANRSRMNVP 325 (386)
T ss_dssp GCHHHHH---HC--------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGBCSSEEE
T ss_pred HHHHHHh---hcC-CCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHcCceEEE
Confidence 3332222 222 125579999999999999999998 79999999999999999999988752222233346777899
Q ss_pred EEcCC-CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 311 VIVPS-HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 311 ~~~~~-~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
|.+++ +.+ .++.+.|. ++||.++.|.... +.+|+|++++++.+|++
T Consensus 326 f~~~~~~~~-~~~~~~L~-~~gI~~~~g~~~~--~~iRiS~~~~~t~edId 372 (386)
T 3qm2_A 326 FQLADNTLD-KVFLEESF-AAGLHALKGHRVV--GGMRASIYNAMPIEGVK 372 (386)
T ss_dssp EEESSGGGH-HHHHHHHH-HTTEECCBCCTTT--CSEEEECCTTSCHHHHH
T ss_pred EECCCcccc-HHHHHHHH-HCCCEEeCCCCCc--CeEEEEcCCCCCHHHHH
Confidence 99864 344 57777775 5599998876553 33999998887765544
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=291.88 Aligned_cols=326 Identities=14% Similarity=0.121 Sum_probs=261.2
Q ss_pred ccccCCCCCChHHHHHHHccCCC------------CCCCCcHHHHHHHHHHHHHHHhcCCCCceEEe-cCChhHHHHHHH
Q 017726 11 HLFVPGPVHIPDQVIRAMNRNNE------------DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLI-PTTGTGAWESAL 77 (367)
Q Consensus 11 ~~~~~~p~~~~~~v~~a~~~~~~------------~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~-~~ggt~al~~~~ 77 (367)
.+..+.+.++|++|++++.+... .+++..+.+..+++|+.+++++|++++++|+| ++|||+++++++
T Consensus 15 ~~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~ 94 (377)
T 3e77_A 15 TENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVP 94 (377)
T ss_dssp CCCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHH
T ss_pred cccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHH
Confidence 45677889999999999998764 34555678899999999999999987666888 589999999999
Q ss_pred HccCCC--CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc
Q 017726 78 TNTLSP--GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN 155 (367)
Q Consensus 78 ~~~~~~--gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~ 155 (367)
.+++.+ ||++++...++++.+|...++..|..+..++.+.++..++++++.+++ +++++|.+++.+|.||++.|
T Consensus 95 ~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~----~~t~lV~~~h~et~tG~~~p 170 (377)
T 3e77_A 95 LNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLN----PDASYVYYCANETVHGVEFD 170 (377)
T ss_dssp HHHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCCC----TTCSCEEEESEETTTTEECS
T ss_pred HhccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCCCcCCCCChHHhccC----CCccEEEEeCccCchheEch
Confidence 988755 899999999999988888888889888877876666677777766555 57899999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechH
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (367)
+ +|++ +|+++++|++++++..++|+.+++ ++++|+||++ ||+|+|++++++++++++.+.. + .++++.
T Consensus 171 i-----i~~~--~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~-gp~G~g~l~~~~~~l~~~~~~~-p-~~~~~~ 238 (377)
T 3e77_A 171 F-----IPDV--KGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNV-GSAGVTVVIVRDDLLGFALREC-P-SVLEYK 238 (377)
T ss_dssp S-----CCCC--TTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGGTT-SCTTCEEEEEETTSCSCCCTTS-C-GGGCHH
T ss_pred h-----hhcc--CCCEEEEEcccccCCCCCchhhcC--EEEEeccccc-CCCccEEEEEcHHHHhhccCCC-C-chhhHH
Confidence 8 4777 999999999999999999998765 6889999999 7999999999999876655322 1 233333
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEc
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV 313 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~ 313 (367)
...+ .+ ..++|+++..++++.++++++.++ |++++.++.+++++++++.|+++ |+.+...++..+++.++.|.+
T Consensus 239 ~~~~---~~-~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~ 314 (377)
T 3e77_A 239 VQAG---NS-SLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRI 314 (377)
T ss_dssp HHHT---TT-TCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEE
T ss_pred HHhh---cC-CCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEc
Confidence 2222 12 236789999999999999999999 79999999999999999999998 887644344457777789998
Q ss_pred CCCCCH-----HHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 314 PSHINS-----SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 314 ~~~~~~-----~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
+ ++++ ..+.+.|. ++||.+++|.... +.+|+|++++++.+|++
T Consensus 315 ~-~~~~~~~~~~~~l~~l~-~~Gi~~~~g~~~~--g~iRiS~~~~~t~edId 362 (377)
T 3e77_A 315 G-NAKGDDALEKRFLDKAL-ELNMLSLKGHRSV--GGIRASLYNAVTIEDVQ 362 (377)
T ss_dssp S-STTCCHHHHHHHHHHHH-HTTEESCBCCTTT--CSEEEECCTTSCHHHHH
T ss_pred C-CCCCchhHHHHHHHHHH-HCCcEEeCCCCcC--CEEEEECCCCCCHHHHH
Confidence 5 4332 35666665 4599998876432 34999998887765543
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=283.78 Aligned_cols=342 Identities=16% Similarity=0.124 Sum_probs=265.2
Q ss_pred CCCcccccCCCCCChHHHHHHHccCCCCC-----C---CC-cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 017726 7 PGKNHLFVPGPVHIPDQVIRAMNRNNEDY-----R---SP-AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL 77 (367)
Q Consensus 7 ~~~~~~~~~~p~~~~~~v~~a~~~~~~~~-----~---~~-~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~ 77 (367)
+..++++.+++.+.|+.+++++.+..... . .+ .......++++.+++++|.+++ ++++++||++++..++
T Consensus 15 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~-~v~~~~g~t~a~~~~~ 93 (390)
T 1elu_A 15 ANKTYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPN-TITITDNVTTGCDIVL 93 (390)
T ss_dssp TTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGG-GEEEESSHHHHHHHHH
T ss_pred CCeEEecCCccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHH-HEEEeCChHHHHHHHH
Confidence 45677888888888888999988754321 1 11 1246788999999999998754 5999999999999999
Q ss_pred Hcc-CCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 78 TNT-LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 78 ~~~-~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~--~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
.++ +.+||+|+++.++|++.. +...++..|.+++.++.+ .++.+|+++++++++ +++++|++++++||||.
T Consensus 94 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~nptG~ 169 (390)
T 1elu_A 94 WGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG----PKTRLVILSHLLWNTGQ 169 (390)
T ss_dssp HHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC----TTEEEEEEESBCTTTCC
T ss_pred hCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcC----CCceEEEEeccccCCce
Confidence 998 899999999999988865 445567789999999986 567789999999887 46799999999999999
Q ss_pred cccHHHHHHHHH----hcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCC
Q 017726 153 TNNLSKVRKLLD----EYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV 228 (367)
Q Consensus 153 ~~~~~~i~~~~~----~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~ 228 (367)
+.|+++|.++|+ + +|+++|+|++|+.+..+++....++|++++|+||++.|+.|+|++++++++++++......
T Consensus 170 ~~~~~~i~~l~~~~~~~--~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~g 247 (390)
T 1elu_A 170 VLPLAEIMAVCRRHQGN--YPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVG 247 (390)
T ss_dssp BCCHHHHHHHHHHCCSS--SCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCC
T ss_pred ecCHHHHHHHHhhhhhh--cCcEEEEEcccccCCcCCChhhcCCCEEEccccccccCCCceEEEEECHHhHhhcCCcccc
Confidence 999999999999 7 9999999999998877776666678999999999888888899999999887776643221
Q ss_pred cee---------echHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHc-CCccc
Q 017726 229 RVF---------FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAW-GLKNC 297 (367)
Q Consensus 229 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 297 (367)
... +++.+...++ ..++++...+.++.++++.+.+.+ +++++++++++++++.+.|+++ |+++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 322 (390)
T 1elu_A 248 WRSITYGAKGEPTGWAEGGKRF-----EVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCL 322 (390)
T ss_dssp TTTEEECTTSCEEEECSGGGGG-----CCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEES
T ss_pred CCcccccccCcccccccchHhh-----CCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEe
Confidence 100 0000000111 234678777888888999888777 8999999999999999999998 88877
Q ss_pred cCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHH--HHHHhhhhc
Q 017726 298 TQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV--MFNFQLLFQ 366 (367)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~--~~~~~~l~~ 366 (367)
.+.+ ..+.++.++++++.+..++.++|. ++||.+.+|. ..+++||++....+.+ +...++|++
T Consensus 323 ~~~~--~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~---~~~~iRis~~~~~~~~~i~~~~~~l~~ 387 (390)
T 1elu_A 323 ATSA--PQAGLVSFTVDSPLGHRAIVQKLE-EQRIYLRTIA---DPDCIRACCHYITDEEEINHLLARLAD 387 (390)
T ss_dssp CSSC--CSSSEEEEEECSSSCHHHHHHHHH-HTTEECEEET---TTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred cCcc--ccccEEEEEcCCCCCHHHHHHHHH-HCCEEEEecC---CCCeEEEecccCCCHHHHHHHHHHHHh
Confidence 5421 233466778866677889999996 4599998875 2468999986555544 444455543
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=280.44 Aligned_cols=334 Identities=17% Similarity=0.181 Sum_probs=261.0
Q ss_pred CcccccCCCCCChHHHHHHHccCCCC-----CCC-----CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNED-----YRS-----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT 78 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~-----~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~ 78 (367)
..++...++.+.|+.+++++.+.... +++ +.......++++.++++++.++++++++++|+++|+..++.
T Consensus 24 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~ 103 (406)
T 1kmj_A 24 LAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVAN 103 (406)
T ss_dssp CEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHH
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHH
Confidence 46777777778888999998875321 221 12467788999999999998433469999999999999999
Q ss_pred cc----CCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 79 NT----LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 79 ~~----~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
++ +.+||+|+++.++|++.. +...++..|.+++.++.+.++.+|+++++++++ +++++|++++++||||.
T Consensus 104 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~nptG~ 179 (406)
T 1kmj_A 104 SWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFD----EKTRLLAITHVSNVLGT 179 (406)
T ss_dssp HTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCC----TTEEEEEEESBCTTTCC
T ss_pred HhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhc----cCCeEEEEeCCCccccC
Confidence 98 899999999999998763 556677889999999998788899999999997 46799999999999999
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceee
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF 232 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~ 232 (367)
+.|+++|.++|++ +|+++|+|++|+.+..+++....+.|++++|+||.+ |+.|+|++++++++++++........+.
T Consensus 180 ~~~l~~i~~l~~~--~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~~-g~~G~G~~~~~~~~~~~~~~~~~~~~~~ 256 (406)
T 1kmj_A 180 ENPLAEMITLAHQ--HGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLY-GPTGIGILYVKEALLQEMPPWEGGGSMI 256 (406)
T ss_dssp BCCHHHHHHHHHH--TTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTT-SCTTCEEEEECHHHHHHCCCSSCSTTSE
T ss_pred cCCHHHHHHHHHH--cCCEEEEEchhhcCCCCCcccccCCCEEEEEchhcc-CCCCcEEEEEeHHHHhhcCCcccCCCce
Confidence 9999999999999 999999999999887666655567899999999988 6888999999999998887554322110
Q ss_pred c---------hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc
Q 017726 233 D---------WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE 302 (367)
Q Consensus 233 ~---------~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 302 (367)
+ +.....+++ .++++..+++++.++++.+.+.++++++++..++++++.+.|+++ |+++..+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-- 329 (406)
T 1kmj_A 257 ATVSLSEGTTWTKAPWRFE-----AGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ-- 329 (406)
T ss_dssp EEEETTTEEEECCTTGGGC-----CSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCT--
T ss_pred eecccccccccCCCchhcc-----CCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC--
Confidence 0 000011122 335788888888888888887788899999999999999999997 88776652
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC--------CCCcEEEEeecCCCCHHHH
Q 017726 303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK--------VAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~--------~~~~~iRi~~~~~~~~~~~ 359 (367)
. .+.++.+.++ +.+..++.+.|.+ +||.+.+|... ...+++||++....+++|+
T Consensus 330 ~-~~~~~~~~~~-~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i 391 (406)
T 1kmj_A 330 N-RLGVIAFNLG-KHHAYDVGSFLDN-YGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEV 391 (406)
T ss_dssp T-CCSEEEEEET-TCCHHHHHHHHHH-TTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHH
T ss_pred C-cCCEEEEEEC-CCCHHHHHHHHhh-CCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHHH
Confidence 1 2345667774 5677889988865 49999987531 1246899998776555443
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-37 Score=278.24 Aligned_cols=330 Identities=18% Similarity=0.217 Sum_probs=248.9
Q ss_pred CCcccccCCCCCChHHHHHHHccCCC------------CCCCCcHHHHHHHHHHHHHHHhcCCCC-ceEEecCChhHHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNE------------DYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLIPTTGTGAWE 74 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~------------~~~~~~~~~~~~~~~~~la~~~~~~~~-~~v~~~~ggt~al~ 74 (367)
.+.|++.|||.++|+.+++++.+... .++++.+.+..+++++.+++++|++++ +.+++|+|+++++.
T Consensus 3 ~~~~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~ 82 (362)
T 2c0r_A 3 ERAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFA 82 (362)
T ss_dssp CCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHH
T ss_pred cceeeccCCCCCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHH
Confidence 46899999999999999999988652 233444556788999999999999764 43577899999999
Q ss_pred HHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC--CC--CCCHHHHHHHHhccCCCCccEEEEEecCCCc
Q 017726 75 SALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW--GE--GAKLDVLASKLAADTAHTIKAICIVHNETAT 150 (367)
Q Consensus 75 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~--~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~t 150 (367)
.++.+++.+||+|+++++++++..+...++..| +++.++.+. ++ .+|.++++ ++ +++|+|++++++|||
T Consensus 83 ~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~----~~t~~v~~~~~~n~t 155 (362)
T 2c0r_A 83 MIPMNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQ----DNAAYLHLTSNETIE 155 (362)
T ss_dssp HHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CC----TTEEEEEEESEETTT
T ss_pred HHHHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cC----CCcCEEEEeCCcCcc
Confidence 999999999999999888888865556677789 999998762 22 34666654 44 578999999999999
Q ss_pred ccc-ccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCc
Q 017726 151 GVT-NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR 229 (367)
Q Consensus 151 G~~-~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~ 229 (367)
|.+ .|+++| +|+++++|++|+.+..++++.+ .|++++|+||++ |+.|+|++++++++++++.... .
T Consensus 156 G~~~~~l~~i--------~~~~vivD~a~~~~~~~~~~~~--~d~~~~s~~K~~-g~~G~G~l~~~~~~~~~l~~~~--~ 222 (362)
T 2c0r_A 156 GAQFKAFPDT--------GSVPLIGDMSSDILSRPFDLNQ--FGLVYAGAQKNL-GPSGVTVVIVREDLVAESPKHL--P 222 (362)
T ss_dssp TEECSSCCCC--------TTSCEEEECTTTTTSSCCCGGG--CSEEEEETTTTT-CCSSCEEEEEEGGGSSSCCTTS--C
T ss_pred ceeccccccc--------CCCEEEEEChhhccCCccchhH--CcEEEEeccccc-cCcCcEEEEEcHHHHhhccccC--c
Confidence 996 566654 6899999999999887776654 499999999999 5889999999998876664321 1
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHcC-C-ccccCCCccCCC
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWG-L-KNCTQKEEWFSD 306 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g-~-~~~~~~~~~~~~ 306 (367)
.+.++..... .+ ..+++++...+.++.++++.+.+. ++++++++.+++++++.+.|+++| + ++..+ +...+.
T Consensus 223 ~~~~~~~~~~---~~-~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~ 297 (362)
T 2c0r_A 223 TMLRYDTYVK---NN-SLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVD-VDSRSD 297 (362)
T ss_dssp GGGCHHHHHH---TT-TCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSC-GGGBCS
T ss_pred hHHhHHHHhh---cc-CcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCC-hHHcCC
Confidence 2233222111 11 125678888889999999998876 689999999999999999999986 6 66442 222355
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHH--HHHHhhhh
Q 017726 307 TVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV--MFNFQLLF 365 (367)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~--~~~~~~l~ 365 (367)
.++++.++++.+..++++.|.++ ||.+.+|... .+.+|||+....+.+ +.+.++|+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~L~~~-gi~~~~g~~~--~~~iRis~~~~~~~e~i~~l~~~l~ 355 (362)
T 2c0r_A 298 MNITFRLASEELEKEFVKASEQE-GFVGLKGHRS--VGGLRASIYNAVPYESCEALVQFME 355 (362)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT-TEESCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCcchHHHHHHHHHHC-CCeeccCCCC--CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 57788886445677899998654 9988877544 346999987655544 33344443
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=278.60 Aligned_cols=327 Identities=19% Similarity=0.265 Sum_probs=254.4
Q ss_pred CChHHHHHHHcc----CCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCc
Q 017726 19 HIPDQVIRAMNR----NNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQ 94 (367)
Q Consensus 19 ~~~~~v~~a~~~----~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~ 94 (367)
++++++++++.+ ....|+++.+.+..+++++.+++++|.+ +.+++++|||+|++.++.. +.+||+|++..++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~l~~~~~~~--~~v~~~~sgt~a~~~~~~~-~~~gd~vi~~~~~~ 84 (379)
T 3ke3_A 8 DIDPNGLLEYSVVYTDRALNHMSKAFQEVMNDLLSNLKTVYNAE--AAVIIPGSGTYGMEAVARQ-LTIDEDCLIIRNGW 84 (379)
T ss_dssp CCSTTSCCCCCSSCCTTSCCTTSHHHHHHHHHHHHHHHHHHTCS--EEEEEESCHHHHHHHHHHH-HCTTCEEEEEECSH
T ss_pred cCCHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHhCCC--CEEEEcCChhHHHHHHHHh-CCCCCeEEEEeCCc
Confidence 344445555553 3334667777889999999999999987 4689999999999998754 56999999999999
Q ss_pred chHHHHHHHHHhCC--ceEEEeCCCC---------CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHH
Q 017726 95 FSLLWIDQQQRLNF--NVDVVESDWG---------EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVR 160 (367)
Q Consensus 95 ~~~~~~~~~~~~g~--~~~~v~~~~~---------~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~ 160 (367)
++..+...++..|. +++.++.+.. ..+|++++++++++ +++++|++++++|++|.+.| +++|.
T Consensus 85 ~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~~~~G~~~~~~~l~~i~ 161 (379)
T 3ke3_A 85 FSYRWTQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKE---DKSAIVYAPHVETSSGIILSEEYIKALS 161 (379)
T ss_dssp HHHHHHHHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHH---HTCSEEEEESEETTTTEECCHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhh---cCCcEEEEEeecCCCceeCCHHHHHHHH
Confidence 98776666776774 6777776431 25799999999964 35799999999999999999 99999
Q ss_pred HHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHH---
Q 017726 161 KLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDY--- 237 (367)
Q Consensus 161 ~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 237 (367)
++|++ +|+++++|++++ +..++++...++|++++|+||+++|++|+|++++++++++++......++++++..+
T Consensus 162 ~~~~~--~~~~li~D~~~~-g~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 238 (379)
T 3ke3_A 162 EAVHS--VGGLLVIDCIAS-GCVWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTI 238 (379)
T ss_dssp HHHHH--TTCEEEEECTTC-TTCCCCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHH
T ss_pred HHHHH--cCCEEEEEeccc-CCccccccccCCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHH
Confidence 99999 999999999999 888888877789999999999999899999999999999988765555555554433
Q ss_pred HHHhhcCC-ccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCC
Q 017726 238 IKFYNLGT-FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH 316 (367)
Q Consensus 238 ~~~~~~~~-~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 316 (367)
..+++.+. .+.+|+++..++++.++++.+.++|++++.++.+++++++++.|+++|+++..+. ..+++.++.+.. ++
T Consensus 239 ~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~-~~~~~~i~~~~~-~~ 316 (379)
T 3ke3_A 239 MRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESVAAE-GFEAPGVVVSYT-ER 316 (379)
T ss_dssp HHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCT-TCBCSSEEEEEC-SC
T ss_pred HHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCc-cccCceEEEEcc-CC
Confidence 23444442 2345899999999999999999989999999999999999999999998887653 234555555554 22
Q ss_pred CCHHHHHHHHHhhCCeEEccCCCCC-----CCcEEEEeecCCCCHHH
Q 017726 317 INSSEIVRRAWQRYNLSLGLGLNKV-----AGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 317 ~~~~~l~~~L~~~~gv~v~~g~~~~-----~~~~iRi~~~~~~~~~~ 358 (367)
. ...+.+.|. ++||.+.+|..+. .++.+|||++..++++|
T Consensus 317 ~-~~~~~~~L~-~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~d 361 (379)
T 3ke3_A 317 D-DMHKGSAFA-EAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTD 361 (379)
T ss_dssp H-HHHSSHHHH-HTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTC
T ss_pred c-chHHHHHHH-HCCeEEeCCccccccccCcCCEEEEeCCcCCCHHH
Confidence 1 122356665 4599999886532 26789999987665444
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-36 Score=276.13 Aligned_cols=336 Identities=18% Similarity=0.174 Sum_probs=258.0
Q ss_pred CcccccCCCCCChHHHHHHHccCCCC-----CC-C--Cc--HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNED-----YR-S--PA--VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT 78 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~-~--~~--~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~ 78 (367)
.+++....+.+.|+.+.+++.+.... ++ . +. ......++++.++++++..+++++++++||++|+..++.
T Consensus 29 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~ 108 (420)
T 1t3i_A 29 LVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAY 108 (420)
T ss_dssp CEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHH
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHH
Confidence 35666666667889999998875321 21 1 21 246688999999999998433469999999999999999
Q ss_pred cc----CCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 79 NT----LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 79 ~~----~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
++ +.+||+|+++.++|++.. +...++..|++++.++.+.++.+|+++++++++ +++++|++++++||||.
T Consensus 109 ~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~nptG~ 184 (420)
T 1t3i_A 109 SWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLS----EKTKLVTVVHISNTLGC 184 (420)
T ss_dssp HTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCC----TTEEEEEEESBCTTTCB
T ss_pred HhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhC----CCceEEEEeCCcccccC
Confidence 98 899999999999998863 456677889999999998788899999999997 46799999999999999
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceee
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF 232 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~ 232 (367)
+.|+++|.++|++ +|+++|+|++|+.+..+++....+.|++++|+||.+ |+.|+|++++++++++++..........
T Consensus 185 ~~~l~~i~~l~~~--~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~-~~~g~G~~~~~~~~~~~~~~~~~~~~~~ 261 (420)
T 1t3i_A 185 VNPAEEIAQLAHQ--AGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMC-APTGIGFLYGKEEILEAMPPFFGGGEMI 261 (420)
T ss_dssp BCCHHHHHHHHHH--TTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTT-SCTTCEEEEECHHHHHHSCCCSCSTTSE
T ss_pred cCCHHHHHHHHHH--cCCEEEEEhhhccCCccCchhhcCCCEEEEehhhhc-CCCceEEEEEchHHHhhcCceecCCCcc
Confidence 9999999999999 999999999999887665665667899999999955 6888999999999988887544321110
Q ss_pred --------chHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCcc
Q 017726 233 --------DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEW 303 (367)
Q Consensus 233 --------~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~ 303 (367)
.+.....+++ .++++..+.+++.++++.+.+.+++++.++..++++++.+.|+++ |+++..+....
T Consensus 262 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~ 336 (420)
T 1t3i_A 262 AEVFFDHFTTGELPHKFE-----AGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKH 336 (420)
T ss_dssp EEECSSCEEECCTTGGGC-----CSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGG
T ss_pred ccccccccCCCCchhhcc-----CCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccc
Confidence 0000011111 335778787888888888887788999999999999999999998 88877653110
Q ss_pred -CCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC-------CC-CcEEEEeecCCCCHHH
Q 017726 304 -FSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK-------VA-GKVFRIGHLGHLNEVM 358 (367)
Q Consensus 304 -~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~-------~~-~~~iRi~~~~~~~~~~ 358 (367)
..+.++++.++ +.+..++.+.|.+ +||.+.+|..+ .. ++++||++....+.++
T Consensus 337 ~~~~~~~~~~~~-~~~~~~~~~~l~~-~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~ 398 (420)
T 1t3i_A 337 GDRAALASFNVA-GLHASDVATMVDQ-DGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEE 398 (420)
T ss_dssp SCBCSEEEEEET-TBCHHHHHHHHHT-TTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHH
T ss_pred cccCCEEEEEEC-CCCHHHHHHHHHH-CCeEEeeccccchHHHHhcCCCCeEEEecCCCCCHHH
Confidence 01346677774 4577889988864 59999988432 12 5679999876555543
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-36 Score=273.58 Aligned_cols=323 Identities=14% Similarity=0.107 Sum_probs=250.3
Q ss_pred cccccCCCCCChHHHHHHHccCCCC-----CCCC----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNNED-----YRSP----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT 80 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~----~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~ 80 (367)
+|++..++.++++.+++++.+.... +..+ ...+..+++++++++++|.++ +++++++|+++++..++.++
T Consensus 2 iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~i~~~~g~~~a~~~~~~~~ 80 (382)
T 4hvk_A 2 AYFDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGG-GTVVFTSGATEANNLAIIGY 80 (382)
T ss_dssp CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTT-EEEEEESSHHHHHHHHHHHH
T ss_pred EeecCCCcCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCc-CeEEEECCchHHHHHHHHHh
Confidence 5677788888899999988875322 1112 235667899999999999975 45999999999999999887
Q ss_pred C----CCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc
Q 017726 81 L----SPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN 155 (367)
Q Consensus 81 ~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~ 155 (367)
. .+||.|+++.++|++.. ....++..|++++.++.+.++.+|+++++++++ +++++|++++++||||.+.|
T Consensus 81 ~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~ 156 (382)
T 4hvk_A 81 AMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLR----DDTILVSVQHANNEIGTIQP 156 (382)
T ss_dssp HHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCC----TTEEEEECCSBCTTTCBBCC
T ss_pred hhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhc----cCceEEEEECCCCCceeeCC
Confidence 6 89999999999988875 234455679999999999888899999999997 46799999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechH
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (367)
+++|.++|++ +|+ +++|++|+.+..+.+....++|++++|+||++ |+.|+|+++++++. .+.+........
T Consensus 157 ~~~i~~l~~~--~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~-g~~g~g~~~~~~~~--~~~~~~~~~~~~--- 227 (382)
T 4hvk_A 157 VEEISEVLAG--KAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIY-GPKGVGALWIRKEA--KLQPVILGGGQE--- 227 (382)
T ss_dssp HHHHHHHHSS--SSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGT-SCTTCEEEEEETTC--CCCCSSCSSCTG---
T ss_pred HHHHHHHHHH--cCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhc-CCCceEEEEEcCcc--CcCcccccCCCc---
Confidence 9999999999 999 99999999888777776667899999999975 68889999998775 232221111000
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcC
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~ 314 (367)
. .+..++++...+.++.++++...+ ++++++++.+++++++.+.|+++ |+.+..+.. .....++.+.+
T Consensus 228 ---~-----~~~~~~~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~- 296 (382)
T 4hvk_A 228 ---N-----GLRSGSENVPSIVGFGKAAEITAM-EWREEAERLRRLRDRIIDNVLKIEESYLNGHPE-KRLPNNVNVRF- 296 (382)
T ss_dssp ---G-----GTSCSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSS-SBCTTEEEEEE-
T ss_pred ---C-----ccccCCcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCcc-ccCCCEEEEEE-
Confidence 1 112456788888888888886654 58889999999999999999987 887766532 23344677887
Q ss_pred CCCCHHHHHHHHHhhCCeEEccCCCCCC-------------------CcEEEEeecCCCCHHH
Q 017726 315 SHINSSEIVRRAWQRYNLSLGLGLNKVA-------------------GKVFRIGHLGHLNEVM 358 (367)
Q Consensus 315 ~~~~~~~l~~~L~~~~gv~v~~g~~~~~-------------------~~~iRi~~~~~~~~~~ 358 (367)
.+.+..++.+.|.++ ||.+.+|..+.. .+++|+++....+.+|
T Consensus 297 ~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~ 358 (382)
T 4hvk_A 297 SYIEGESIVLSLDMA-GIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDED 358 (382)
T ss_dssp TTCCHHHHHHHHHHT-TCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHH
T ss_pred CCCCHHHHHHHHHHC-CEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHH
Confidence 466788999999655 999998753221 4679999876665543
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-36 Score=281.52 Aligned_cols=337 Identities=12% Similarity=0.039 Sum_probs=255.8
Q ss_pred CCcccccCCCCCChHHHHHHHccCC--------CCCC--CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNN--------EDYR--SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL 77 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~--------~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~ 77 (367)
..+|++..+..+.|+.+.+++.+.. ..+. .+.+....+++++++++++|++++ +|++++|+++++.+++
T Consensus 67 ~~iyld~~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~t~g~t~al~~~~ 145 (465)
T 3e9k_A 67 NAIYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEK-EIALMNALTVNLHLLM 145 (465)
T ss_dssp BCEECBTTTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGG-GEEECSCHHHHHHHHH
T ss_pred CeEEecCCccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcC-CEEEECCHHHHHHHHH
Confidence 4457766665555666655444421 1111 123445667899999999999854 5999999999999999
Q ss_pred HccCCCCCe---EEEEeCCcchHH--HHHHHHHhCCce-----EEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecC
Q 017726 78 TNTLSPGDR---IISFLIGQFSLL--WIDQQQRLNFNV-----DVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNE 147 (367)
Q Consensus 78 ~~~~~~gd~---vl~~~~~~~~~~--~~~~~~~~g~~~-----~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~ 147 (367)
.+++.+++. |++..+.|++.. +...++..|+++ ..++.+.++.+|++++++++++++ +++++|++++++
T Consensus 146 ~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~-~~~~lv~~~~~~ 224 (465)
T 3e9k_A 146 LSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEG-DSIAVILFSGVH 224 (465)
T ss_dssp HHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHG-GGEEEEEEESBC
T ss_pred HHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhcC-CCeEEEEEeCcc
Confidence 998776655 999999998864 555678889875 344666677889999999998543 478999999999
Q ss_pred CCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCC
Q 017726 148 TATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAK 226 (367)
Q Consensus 148 n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~ 226 (367)
||||.+.|+++|.++|++ +|++|++|++|+.+..++++..+++|++++|+||+++ ||.|+|++++++++++.+.+..
T Consensus 225 n~tG~~~~l~~i~~la~~--~g~~vi~D~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~ 302 (465)
T 3e9k_A 225 FYTGQHFNIPAITKAGQA--KGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPAL 302 (465)
T ss_dssp TTTCBBCCHHHHHHHHHH--TTCEEEEECTTTTTTSCCCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSS
T ss_pred cCcceeecHHHHHHHHHH--cCCEEEEEhhhhcCCcCCchhhcCCCEEEECcccccccCCCceEEEEEcHHHHhhcCCcc
Confidence 999999999999999999 9999999999999998888888889999999999995 6777899999999887766543
Q ss_pred CCceeec------------hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH---
Q 017726 227 SVRVFFD------------WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA--- 291 (367)
Q Consensus 227 ~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~--- 291 (367)
.+....+ +.....+++ .++++...++++.++++.+.+.|+++++++..++++++.+.|++
T Consensus 303 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 377 (465)
T 3e9k_A 303 VGWFGHELSTRFKMDNKLQLIPGVCGFR-----ISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYG 377 (465)
T ss_dssp CCGGGBCHHHHTTCCSCCCBCSSGGGGC-----CSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCccCCCCCcccccCCCcCcCCChHHhc-----cCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3211110 011112233 33699999999999999999999999999999999999999998
Q ss_pred --------cCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEee-cCCCCHHHHH
Q 017726 292 --------WGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGH-LGHLNEVMFN 360 (367)
Q Consensus 292 --------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~-~~~~~~~~~~ 360 (367)
.|+++..+.+....+.+++|.++ .+..++.+.|.++ ||.+.. ..++++|+++ ..+++.+|+.
T Consensus 378 ~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~--~~~~~l~~~L~~~-Gi~v~~----~~~~~iRis~~~~~~t~edi~ 448 (465)
T 3e9k_A 378 KDKAATKKPVVNIITPSHVEERGCQLTITFS--VPNKDVFQELEKR-GVVCDK----RNPNGIRVAPVPLYNSFHDVY 448 (465)
T ss_dssp ---------CEEECSCSSGGGBCSCEEEEEC--CTTCCHHHHHHTT-TEECEE----ETTTEEEEBCCTTTCCHHHHH
T ss_pred ccccccCCCCeEEeCCCCHhhcccEEEEEec--CCHHHHHHHHHHC-CEEEec----CCCCEEEEeCcccCCCHHHHH
Confidence 57888776433234557888885 4567899999765 998862 2347899997 4566655443
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-35 Score=268.92 Aligned_cols=331 Identities=16% Similarity=0.183 Sum_probs=244.7
Q ss_pred CcccccCCCCCChHHHHHHHccC---CCC--CCCCcHHHHHHHHHHHHHHHhcCCCCceEEe-cCChhHHHHHHHHccCC
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRN---NED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLI-PTTGTGAWESALTNTLS 82 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~---~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~-~~ggt~al~~~~~~~~~ 82 (367)
..+++.|||.++|+.+++++.+. ... ++++.+.+..+++++.+++++|+++++++++ |+||++++..++.++++
T Consensus 40 ~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~ 119 (398)
T 2fyf_A 40 RDGRFGSGPSKVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLID 119 (398)
T ss_dssp SSCBCCSSSCCCCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCS
T ss_pred CCccccCCCCCCCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcC
Confidence 35789999999999999999983 222 3444555678899999999999985456888 99999999999999888
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHh--CCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHH
Q 017726 83 PGDRIISFLIGQFSLLWIDQQQRL--NFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVR 160 (367)
Q Consensus 83 ~gd~vl~~~~~~~~~~~~~~~~~~--g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~ 160 (367)
+| +++.....++..+...+... |.+++.++.+.+...+. + ++ +++++|++++++||||.+.|+++|.
T Consensus 120 ~g--v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~g~~~~~-~----i~----~~~~~v~~~~~~nptG~~~~~~~i~ 188 (398)
T 2fyf_A 120 KR--SLHLTYGEFSAKFASAVSKNPFVGEPIIITSDPGSAPEP-Q----TD----PSVDVIAWAHNETSTGVAVAVRRPE 188 (398)
T ss_dssp SC--EEEEECSHHHHHHHHHHHHCTTSCCCEEEECCTTCCCCC-C----CC----TTCSEEEEESEETTTTEECCCCCCT
T ss_pred CC--eEEEeCCHHHHHHHHHHHHhCCCCceEEEecCCCCCCCc-c----cc----CCCCEEEEeCcCCCcceecchHHhh
Confidence 86 22224555654433445555 88999998873332332 1 33 5789999999999999999988877
Q ss_pred HHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCC----CCceeechHH
Q 017726 161 KLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAK----SVRVFFDWKD 236 (367)
Q Consensus 161 ~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~----~~~~~~~~~~ 236 (367)
++ +|+++++|++|+.+..+++.. ++|++++|+||+++++.|+|++++++++++++.... ....+.++..
T Consensus 189 ~~-----~~~~vivD~a~~~~~~~~~~~--~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 261 (398)
T 2fyf_A 189 GS-----DDALVVIDATSGAGGLPVDIA--ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPI 261 (398)
T ss_dssp TC-----C-CEEEEECTTTTTTSCCCGG--GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHH
T ss_pred hh-----cCCeEEEEeccccCCcccCcc--cCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCCCCcEEehHH
Confidence 65 799999999999888776654 489999999999976557899999999988774311 0011222222
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcC
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~ 314 (367)
....+..+ +..++++...++++.++++.+.+.| +++++++..++++++.+.|+++ |+++..+.+..+++.+++++++
T Consensus 262 ~~~~~~~~-~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~ 340 (398)
T 2fyf_A 262 AVENSLKN-QTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFV 340 (398)
T ss_dssp HHHHHTTT-CCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEEC
T ss_pred HhhhcccC-CCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECC
Confidence 11211112 2356788888889999999888877 9999999999999999999998 8877642221245557889887
Q ss_pred CCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 315 SHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 315 ~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
++.+..++.+.|.++ ||.+++|+....++++||++....+.+|+
T Consensus 341 ~~~~~~~l~~~L~~~-gI~v~~g~~~~~~~~iRis~~~~~t~e~i 384 (398)
T 2fyf_A 341 DDVDAGTVAKILRAN-GIVDTEPYRKLGRNQLRVAMFPAVEPDDV 384 (398)
T ss_dssp TTSCHHHHHHHHHHT-TCBCCSCCTTTCSSEEEEECCTTSCHHHH
T ss_pred CCCCHHHHHHHHHHC-CcEEecCcccCCCCEEEEEecCCCCHHHH
Confidence 677889999999866 99999875544457899998765555443
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-36 Score=273.52 Aligned_cols=323 Identities=14% Similarity=0.113 Sum_probs=247.6
Q ss_pred cccccCCCCCChHHHHHHHccCCCC-----CCCCc----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNNED-----YRSPA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT 80 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~~----~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~ 80 (367)
+|++..++.++++.+++++.+.... +..+. ..+...++++++++++|.++ +++++|+||++|+..++.++
T Consensus 2 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-~~v~~~~g~t~a~~~~~~~l 80 (382)
T 4eb5_A 2 AYFDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGG-GTVVFTSGATEANNLAIIGY 80 (382)
T ss_dssp CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTT-EEEEEESSHHHHHHHHHHHH
T ss_pred eeeccCCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCC-CeEEEcCchHHHHHHHHHHH
Confidence 5777788888999999998875432 11122 34678899999999999875 46999999999999999887
Q ss_pred C----CCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc
Q 017726 81 L----SPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN 155 (367)
Q Consensus 81 ~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~ 155 (367)
. .+||+|+++.++|++.. ....++..|++++.++.+.++.+|+++++++++ +++++|++++++||||.+.|
T Consensus 81 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~ 156 (382)
T 4eb5_A 81 AMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLR----DDTILVSVQHANNEIGTIQP 156 (382)
T ss_dssp HHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCC----TTEEEEECCSBCTTTCBBCC
T ss_pred HhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhc----CCCeEEEEeccCCCccccCC
Confidence 6 89999999999888764 223334579999999998888899999999997 46799999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechH
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (367)
+++|.++|++ +|++ |+|++|+++..++++...++|++++|+||++ |+.|+|+++++++. .+....... ..
T Consensus 157 l~~i~~l~~~--~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~-g~~g~G~~~~~~~~--~l~~~~~~~-~~--- 226 (382)
T 4eb5_A 157 VEEISEVLAG--KAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIY-GPKGVGALWIRKEA--KLQPVILGG-GQ--- 226 (382)
T ss_dssp HHHHHHHHTT--SSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGT-CCSSCEEEEEETTC--CCCCSSCSS-CT---
T ss_pred HHHHHHHHHH--CCCE-EEEcchhcCCcccCccccCCCEEEeehHHhc-CCCceEEEEEcccc--ccCceecCC-Cc---
Confidence 9999999999 9999 9999999877666655557899999999985 68889999998763 222211100 00
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcC
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~ 314 (367)
.. .+..++++...+.++.++++.+.+ ++++++++..++++++.+.|+++ |+++..+... ..+.++++.++
T Consensus 227 --~~-----~~~~~~~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~ 297 (382)
T 4eb5_A 227 --EN-----GLRSGSENVPSIVGFGKAAEITAM-EWREEAERLRRLRDRIIDNVLKIEESYLNGHPEK-RLPNNVNVRFS 297 (382)
T ss_dssp --GG-----GTSCSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSS-BCTTEEEEEET
T ss_pred --cc-----cccCCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCccc-CCCCEEEEEeC
Confidence 00 112446777777888888887765 58889999999999999999987 7777654321 23456778885
Q ss_pred CCCCHHHHHHHHHhhCCeEEccCCCCC-------------------CCcEEEEeecCCCCHHH
Q 017726 315 SHINSSEIVRRAWQRYNLSLGLGLNKV-------------------AGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 315 ~~~~~~~l~~~L~~~~gv~v~~g~~~~-------------------~~~~iRi~~~~~~~~~~ 358 (367)
+.+..++.+.|.+ +||.+.+|..+. ..+++||++....+.++
T Consensus 298 -~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~ 358 (382)
T 4eb5_A 298 -YIEGESIVLSLDM-AGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDED 358 (382)
T ss_dssp -TSCHHHHHHHHHH-HTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHH
T ss_pred -CcCHHHHHHHHHH-CCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHH
Confidence 5678899999975 499999875311 14689999765555443
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=273.75 Aligned_cols=328 Identities=14% Similarity=0.129 Sum_probs=257.9
Q ss_pred CCCCcccccCCCCCChHHHHHHHccCCC--CCC------CC----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHH
Q 017726 6 APGKNHLFVPGPVHIPDQVIRAMNRNNE--DYR------SP----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAW 73 (367)
Q Consensus 6 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~--~~~------~~----~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al 73 (367)
.+..+|++.+++.++++.+++++.+... ... .+ ...+...++++.++++++.+++ ++++++||++|+
T Consensus 20 ~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~v~~~~ggt~a~ 98 (423)
T 3lvm_A 20 MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR-EIVFTSGATESD 98 (423)
T ss_dssp CCSSEECBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG-GEEEESSHHHHH
T ss_pred cCCCEeecCCCcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCC-eEEEeCChHHHH
Confidence 4567899999999999999999998765 211 11 2346678999999999999754 499999999999
Q ss_pred HHHHHccC----CCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCC
Q 017726 74 ESALTNTL----SPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNET 148 (367)
Q Consensus 74 ~~~~~~~~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n 148 (367)
..++.++. .+||.|+++.+.|++.. ....++..|++++.++.+.++.+|+++++++++ +++++|++++++|
T Consensus 99 ~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~n 174 (423)
T 3lvm_A 99 NLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMR----DDTILVSIMHVNN 174 (423)
T ss_dssp HHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCC----TTEEEEECCSBCT
T ss_pred HHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcC----CCcEEEEEeCCCC
Confidence 99998766 37999999999888864 223346679999999999888899999999998 4679999999999
Q ss_pred CccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCC
Q 017726 149 ATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV 228 (367)
Q Consensus 149 ~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~ 228 (367)
|||.+.|+++|.++|++ +|+++|+|++++.+..+.+....++|++++|+||.+ |+.|+|+++++++..+.+......
T Consensus 175 ptG~~~~l~~i~~l~~~--~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~-g~~g~G~~~~~~~~~~~~~~~~~~ 251 (423)
T 3lvm_A 175 EIGVVQDIAAIGEMCRA--RGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIY-GPKGIGALYVRRKPRVRIEAQMHG 251 (423)
T ss_dssp TTCBBCCHHHHHHHHHH--HTCEEEEECTTTTTTSCCCTTTSCCSEEEEESTTTT-SCSSCEEEEECBTTBCCCCCSSCS
T ss_pred CCccccCHHHHHHHHHH--cCCEEEEEhhhhcCCCCcChhhcCCCEEEechHHhc-CCCCeEEEEEeccccCCCCccccC
Confidence 99999999999999999 999999999999888777777778999999999965 688899999998876555443221
Q ss_pred ceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCc
Q 017726 229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDT 307 (367)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~ 307 (367)
... ...+..++++...+.++.++++.+.+. +++++++..++++++.+.|+++ |+.+..+... ....
T Consensus 252 ~~~-----------~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~~~ 318 (423)
T 3lvm_A 252 GGH-----------ERGMRSGTLPVHQIVGMGEAYRIAKEE-MATEMERLRGLRNRLWNGIKDIEEVYLNGDLEH-GAPN 318 (423)
T ss_dssp SCT-----------TTTTCCSCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTT-BCTT
T ss_pred Ccc-----------cccccCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccc-cCCC
Confidence 100 011224567888888888888887766 7889999999999999999888 8887765322 3345
Q ss_pred eEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCC-------------------CcEEEEeecCCCCHHH
Q 017726 308 VTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVA-------------------GKVFRIGHLGHLNEVM 358 (367)
Q Consensus 308 ~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~-------------------~~~iRi~~~~~~~~~~ 358 (367)
++.|.+ .+.+..++.+.|.+ |.+.+|..... ++++||++....+++|
T Consensus 319 ~~~~~~-~~~~~~~l~~~l~~---i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~ 384 (423)
T 3lvm_A 319 ILNVSF-NYVEGESLIMALKD---LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEE 384 (423)
T ss_dssp EEEEEE-TTSCHHHHHHHTTT---EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHH
T ss_pred eEEEEe-CCCCHHHHHHHHhh---heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHH
Confidence 677777 56788899998854 88887754222 3679999876665543
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-35 Score=268.63 Aligned_cols=337 Identities=14% Similarity=0.111 Sum_probs=259.2
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCC----C-CCCc----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNED----Y-RSPA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT 78 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~----~-~~~~----~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~ 78 (367)
...|++.+++.++++.+++++.+.... . ..+. ......++++.+++++|.++. ++++++|+++++..++.
T Consensus 26 ~~~~ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~~g~t~al~~~~~ 104 (406)
T 3cai_A 26 GWVHFDAPAGMLIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPG-GVVLGADRAVLLSLLAE 104 (406)
T ss_dssp SCEECBGGGCCCCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGG-GEEEESCHHHHHHHHHH
T ss_pred CeEEEeCCCcCCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEeCChHHHHHHHHH
Confidence 368888888889999999999875321 1 1222 356788999999999998643 59999999999999888
Q ss_pred cc---CCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCC-CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 79 NT---LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 79 ~~---~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
++ +.+||+|+++.++|++.. +...++..|++++.++.+ .++.+|+++++++++ +++++|++++++||||.
T Consensus 105 ~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~nptG~ 180 (406)
T 3cai_A 105 ASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLIS----KSTRLVAVNSASGTLGG 180 (406)
T ss_dssp HTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCC----TTEEEEEEESBCTTTCB
T ss_pred HHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhC----CCceEEEEeCCcCCccc
Confidence 76 789999999999888753 434455579999999987 677889999999997 46799999999999999
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcce-eeeeCHHHHHHhccCCCCcee
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMG-IVCASPKALEASKTAKSVRVF 231 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g-~~~~~~~~~~~~~~~~~~~~~ 231 (367)
+.|+++|.++|++ +|+++|+|++|+.+..++++...++|++++|+||++ |+. +| ++++++++++++....... .
T Consensus 181 ~~~l~~i~~l~~~--~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~~-g~~-~G~~~~~~~~~~~~l~~~~~~~-~ 255 (406)
T 3cai_A 181 VTDLRAMTKLVHD--VGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWG-GPP-IGAMVFRDPSVMNSFGSVSTNP-Y 255 (406)
T ss_dssp BCCCHHHHHHHHH--TTCEEEEECTTTTTTCCCCHHHHCCSEEEEEGGGGT-SCS-CEEEEESCHHHHHTSCCCCSCT-T
T ss_pred cCCHHHHHHHHHH--cCCEEEEEcccccCCCCCCchhcCCCEEEeehhhhc-CCC-cCeEEEEehHHHhhcCCcccCC-C
Confidence 9999999999999 999999999999877766665567999999999987 555 78 9999999888776542100 0
Q ss_pred echHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC--------------hHHHHHHHHHHHHHHHHHHHHc-CCcc
Q 017726 232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG--------------LENVIERHRRLGKATRLAVEAW-GLKN 296 (367)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g--------------~~~~~~~~~~~~~~l~~~L~~~-g~~~ 296 (367)
.+ ...++ ..++++...++++.++++.+.+.| +++++++..++++++.+.|+++ |+++
T Consensus 256 ~~---~~~~~-----~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 327 (406)
T 3cai_A 256 AT---GPARL-----EIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVML 327 (406)
T ss_dssp CC---GGGGG-----CCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred CC---ccccc-----cCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 00 00112 244688888888888998887654 6788899999999999999997 7777
Q ss_pred ccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCC-------C--CCCcEEEEeecCCCCHH--HHHHhhhh
Q 017726 297 CTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLN-------K--VAGKVFRIGHLGHLNEV--MFNFQLLF 365 (367)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~-------~--~~~~~iRi~~~~~~~~~--~~~~~~l~ 365 (367)
..+.. ...+ ++++.++ +.+..++.+.|.+ +||.+.+|.. . ....++||++....+.+ +...++|+
T Consensus 328 ~~~~~-~~~~-~~~~~~~-~~~~~~~~~~L~~-~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~ 403 (406)
T 3cai_A 328 IGRPE-AQIP-VVSFAVH-KVPADRVVQRLAD-NGILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALA 403 (406)
T ss_dssp CCCCS-SBCS-EEEEEET-TBCHHHHHHHHHH-TTEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcc-ccCC-EEEEEEC-CcCHHHHHHHHHH-CCcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHH
Confidence 66432 2344 6778874 5678899999965 5999998751 1 12467999987766544 44445554
Q ss_pred c
Q 017726 366 Q 366 (367)
Q Consensus 366 ~ 366 (367)
+
T Consensus 404 ~ 404 (406)
T 3cai_A 404 S 404 (406)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=269.78 Aligned_cols=324 Identities=16% Similarity=0.151 Sum_probs=246.5
Q ss_pred cccccCCCCCChHHHHHHHccCCCCC-----C----CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNNEDY-----R----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT 80 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~~~~-----~----~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~ 80 (367)
+|++..+..++++.+++++.+..... . ++.......++++.+++++|.+++ ++++++||++|+..++.++
T Consensus 3 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~~g~t~a~~~~~~~~ 81 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPS-EIFFTSCATESINWILKTV 81 (384)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGG-GEEEESCHHHHHHHHHHHH
T ss_pred EEEecCccCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCC-eEEEECCHHHHHHHHHHhh
Confidence 67777777789999999988754321 1 123456788999999999998754 5999999999999999887
Q ss_pred C----CCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc
Q 017726 81 L----SPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN 155 (367)
Q Consensus 81 ~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~ 155 (367)
. .+||+|+++.+.|++.. ....++..|.+++.++.+.++.+|+++++++++ +++++|++++++||||.++|
T Consensus 82 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~ 157 (384)
T 1eg5_A 82 AETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVD----EDTFLVSIMAANNEVGTIQP 157 (384)
T ss_dssp HHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCC----TTEEEEEEESBCTTTCBBCC
T ss_pred hhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhC----CCCeEEEEECCCCCcccccC
Confidence 6 79999999999888764 333446789999999998888899999999997 46799999999999999999
Q ss_pred HHHHHHHHHhcCCC--cEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeec
Q 017726 156 LSKVRKLLDEYRHP--ALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFD 233 (367)
Q Consensus 156 ~~~i~~~~~~~~~~--~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 233 (367)
+++|.++|++ +| +++|+|++|+++..++++...+.|++++|+||++ |++|+|++++++++ ++....... .
T Consensus 158 ~~~i~~l~~~--~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~-g~~G~G~~~~~~~~--~~~~~~~~~-~-- 229 (384)
T 1eg5_A 158 VEDVTRIVKK--KNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFH-GPKGVGITYIRKGV--PIRPLIHGG-G-- 229 (384)
T ss_dssp HHHHHHHHHH--HCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGT-SCTTCEEEEECTTS--CCCCSBCSS-C--
T ss_pred HHHHHHHHHh--cCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHhc-CCCceEEEEEcCCC--ccccccccC-c--
Confidence 9999999999 88 9999999999876666665567899999999986 68789999999875 122111000 0
Q ss_pred hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEc
Q 017726 234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIV 313 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 313 (367)
....+..++++...+.++.++++.+.+ +++++++++.++++++.+.|++.|+++..+... .....++|.+
T Consensus 230 --------~~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~~~ 299 (384)
T 1eg5_A 230 --------QERGLRSGTQNVPGIVGAARAMEIAVE-ELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEI-SLPNTLSVSF 299 (384)
T ss_dssp --------TTTTTBCSCCCHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHTTTCEECSCTTS-BCTTEEEEEC
T ss_pred --------ccccccCCCCChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHhCCCCeEEeCCccc-CCCCEEEEEe
Confidence 000112456788777888888887644 478899999999999999999888877654221 2334677777
Q ss_pred CCCCCHHHHHHHHHhhCCeEEccCCCCC-------------------CCcEEEEeecCCCCHHH
Q 017726 314 PSHINSSEIVRRAWQRYNLSLGLGLNKV-------------------AGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 314 ~~~~~~~~l~~~L~~~~gv~v~~g~~~~-------------------~~~~iRi~~~~~~~~~~ 358 (367)
+ +.+..++.+.|. ++||.+.+|.... ..+++||++....+.+|
T Consensus 300 ~-~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~ 361 (384)
T 1eg5_A 300 P-NIRGSTLQNLLS-GYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEE 361 (384)
T ss_dssp T-TCCHHHHHHHHH-HTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHH
T ss_pred C-CCCHHHHHHHHh-hCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHH
Confidence 5 567889999996 5699999874321 13679999775455443
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=271.79 Aligned_cols=333 Identities=12% Similarity=0.122 Sum_probs=246.6
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCC-----CC----CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNED-----YR----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT 78 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~----~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~ 78 (367)
..+|++.+++.++++.+.+++.+.... .. ++...+..+++++++++++|.+++ ++++++|+++|+..++.
T Consensus 20 ~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~v~~~~g~t~al~~~~~ 98 (400)
T 3vax_A 20 HMTYLDAAATTRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPD-ELIFTSGATESNNIALL 98 (400)
T ss_dssp --CCCCCCCCSSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGG-GEEEESCHHHHHHHHHH
T ss_pred CcEEecCCCCCCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCC-cEEEeCCHHHHHHHHHH
Confidence 367888999999999999999885421 11 112345678999999999999754 59999999999999999
Q ss_pred ccC----CCCC-eEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 79 NTL----SPGD-RIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 79 ~~~----~~gd-~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
+++ .+|| .|+++.++|++.. ....++..|++++.++.+.++.+|+++++++++ +++++|++++++||||.
T Consensus 99 ~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~nptG~ 174 (400)
T 3vax_A 99 GLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLR----PDTLLVSLMHVNNETGV 174 (400)
T ss_dssp TTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCC----TTEEEEECCSBCTTTCB
T ss_pred HHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcC----CCceEEEEECCCCCcee
Confidence 887 8999 9999999888864 223345579999999998888899999999987 46799999999999999
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeee-eCHHHHH----HhccCCC
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVC-ASPKALE----ASKTAKS 227 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~-~~~~~~~----~~~~~~~ 227 (367)
+.|+++|.++|++ +|+++|+|++|+.+..+.+.... +|++++|+||. .|+.|+|+++ ++++.+. .+.+...
T Consensus 175 ~~~l~~i~~la~~--~~~~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K~-~g~~g~g~~~~~~~~~~~~~~~~~~~~~~ 250 (400)
T 3vax_A 175 IQPVAELAQQLRA--TPTYLHVDAAQGYGKVPGDLTTP-IDMISISGHKI-GAPKGVGALVTRRREEMDDERVPLEPIMF 250 (400)
T ss_dssp BCCHHHHHHHHTT--SSCEEEEECTTTTTTSGGGGGSC-CSEEEEETGGG-TSCSSCEEEEECBCSSSTTCBCCCCCSSC
T ss_pred eCcHHHHHHHHHh--cCCEEEEEhhhhcCCCCcChhhc-CcEEEEeHHHh-CCCCceEEEEEecchhccccccccCceec
Confidence 9999999999999 99999999999988877777666 89999999995 5688899999 8873211 1221111
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCc
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDT 307 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 307 (367)
.... . ..+..++++...+.++.++++.+.+ ++++++++..++++++.+.|+..|+.+..+... ....
T Consensus 251 ~~~~----------~-~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~ 317 (400)
T 3vax_A 251 GGGQ----------E-RKLRPGTLPVPLIMGLAEAAKIFEA-EHAQWQVAAQDLRSRLLAGLASTSFQVNGDQDH-VVPH 317 (400)
T ss_dssp SSCT----------G-GGTSCSCCCHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHTTTTCEECSCTTS-BCTT
T ss_pred CCCc----------e-eeeecCCCCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhhCCCCEEEeCCccc-CCCC
Confidence 0000 0 0122456888888888888887765 588999999999999999999338887765322 3345
Q ss_pred eEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCC-------------------CcEEEEee-cCCC--CHHHHHHhhhh
Q 017726 308 VTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVA-------------------GKVFRIGH-LGHL--NEVMFNFQLLF 365 (367)
Q Consensus 308 ~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~-------------------~~~iRi~~-~~~~--~~~~~~~~~l~ 365 (367)
++.+.++ +.+.+++.+.|. + ||.+.+|..+.. .+++||++ .... ++.+...+.|+
T Consensus 318 ~~~~~~~-~~~~~~l~~~L~-~-gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~ 394 (400)
T 3vax_A 318 ILNLSFE-DVDAEAFLVTLK-D-LVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVA 394 (400)
T ss_dssp EEEEECT-TCCHHHHHHHHH-H-HHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC---------------
T ss_pred EEEEEeC-CCCHHHHHHHHh-c-CcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHH
Confidence 7778874 568889999997 4 999988742211 37899998 5443 34444444444
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=253.20 Aligned_cols=311 Identities=9% Similarity=0.009 Sum_probs=239.9
Q ss_pred CCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcc
Q 017726 16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF 95 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~ 95 (367)
.|.++++.+.+++.+.......+ ......++|+.++++++.+++ ++++++|+++++..++.+++.+||+|+++.+.|+
T Consensus 42 ~~~~~~~~v~~a~~~~~~~~~~y-~~~~~~~lr~~la~~~~~~~~-~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~ 119 (363)
T 3ffh_A 42 NPLGTSKKVAAIQANSSVETEIY-PDGWASSLRKEVADFYQLEEE-ELIFTAGVDELIELLTRVLLDTTTNTVMATPTFV 119 (363)
T ss_dssp CTTCCCHHHHHHHHTCBSCCCBC-----CHHHHHHHHHHHTCCGG-GEEEESSHHHHHHHHHHHHCSTTCEEEEEESSCH
T ss_pred CCCCCCHHHHHHHHHHHHHhhcC-CCcchHHHHHHHHHHhCCChh-hEEEeCCHHHHHHHHHHHHccCCCEEEEcCCChH
Confidence 35567899999999866543323 235578999999999998764 5999999999999999999999999999999877
Q ss_pred hHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEe
Q 017726 96 SLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD 175 (367)
Q Consensus 96 ~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D 175 (367)
+. ...++..|.+++.++.++++.+|+++++++++ +++++|++++|+||||.++|.+++.++++....|+++|+|
T Consensus 120 ~~--~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~----~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~D 193 (363)
T 3ffh_A 120 QY--RQNALIEGAEVREIPLLQDGEHDLEGMLNAID----EKTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLD 193 (363)
T ss_dssp HH--HHHHHHHTCEEEEEECCTTSCCCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEE
T ss_pred HH--HHHHHHcCCEEEEecCCCCCCcCHHHHHHhcc----cCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEe
Confidence 64 35577889999999998888899999999997 4679999999999999999999999999982129999999
Q ss_pred eeeccCce-----eec-cccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCcc
Q 017726 176 GVSSICAI-----DFR-MDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFW 247 (367)
Q Consensus 176 ~~~~~~~~-----~~~-~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (367)
++|+.+.. ... ....+.++++.|++|+++ ++| +|++++++++++++.....
T Consensus 194 e~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~l~~~~~-------------------- 252 (363)
T 3ffh_A 194 EAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYG-LASARVGYGIADKEIIRQLNIVRP-------------------- 252 (363)
T ss_dssp CTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTC-CSSCCCEEEEECHHHHHHHHHTCC--------------------
T ss_pred CchHhhcCccccCHHHHhhcCCCEEEEeechhhhc-CchhceeeeecCHHHHHHHHHhCC--------------------
Confidence 99984332 111 112345688999999984 455 4999999999888875321
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-cCCccccCCCccCCCceEEEEcCCCCCHHHHHHHH
Q 017726 248 PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-WGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRA 326 (367)
Q Consensus 248 ~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 326 (367)
+++++.....++.++++.. ..++++++++.++++++.+.|++ .|+.+..+ .+.+++++++. +..++.+.|
T Consensus 253 ~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-----~~~~~~~~~~~--~~~~~~~~l 323 (363)
T 3ffh_A 253 PFNTTSIGQKLAIEAIKDQ--AFIGECRTSNANGIKQYEAFAKRFEKVKLYPA-----NGNFVLIDLGI--EAGTIFSYL 323 (363)
T ss_dssp SCCCBHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHHHHCTTCEECCC-----CSSEEEEECSS--CHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHhhCCCceECCC-----CCeEEEEECCC--CHHHHHHHH
Confidence 3457776666666666532 23778889999999999999999 58887654 23467888853 788999999
Q ss_pred HhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 327 WQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 327 ~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
.++ ||.+.+|..+..++++||++. ..++.+...++|++
T Consensus 324 ~~~-gi~v~~g~~~~~~~~iRis~~-~~~~i~~~~~~l~~ 361 (363)
T 3ffh_A 324 EKN-GYITRSGAALGFPTAVRITIG-KEEDNSAVIALLEK 361 (363)
T ss_dssp HHT-TEECEETTTTTCTTEEEEECC-CHHHHHHHHHHHHH
T ss_pred HHC-CeEEEeCccCCCCCeEEEECC-CHHHHHHHHHHHHH
Confidence 754 999999876555789999965 44455566665543
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=259.79 Aligned_cols=323 Identities=15% Similarity=0.171 Sum_probs=238.5
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCC------------CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCCh-hHHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNED------------YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTG-TGAWE 74 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~------------~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~gg-t~al~ 74 (367)
.+.|++.+||.++|+.+++++.+.... ++++...+..+++++.+++++|.++++++++++|+ ++|+.
T Consensus 2 ~~~~~~~~g~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~ 81 (360)
T 1w23_A 2 KQVFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFT 81 (360)
T ss_dssp CCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHH
T ss_pred CceEeecCCCcCCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHH
Confidence 367899999999999999999986532 11334556788999999999999755679999998 99999
Q ss_pred HHHHccCCCC---CeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHH-HHhccCCCCccEEEEEecCCC
Q 017726 75 SALTNTLSPG---DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLAS-KLAADTAHTIKAICIVHNETA 149 (367)
Q Consensus 75 ~~~~~~~~~g---d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~-~i~~~~~~~~~lv~~~~~~n~ 149 (367)
.++.+++.+| |.|+++. +++.....++..| +++.++.++ ++.+|++++++ +++ +++|+|++++++||
T Consensus 82 ~~~~~l~~~~~~g~~vi~~~---~~~~~~~~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~----~~~k~v~~~~~~np 153 (360)
T 1w23_A 82 MLPMNLLTKGTIGNYVLTGS---WSEKALKEAKLLG-ETHIAASTKANSYQSIPDFSEFQLN----ENDAYLHITSNNTI 153 (360)
T ss_dssp HHHHHHCCTTCEEEEEECSH---HHHHHHHHHHTTS-EEEEEEECGGGTSCSCCCGGGCCCC----TTEEEEEEESEETT
T ss_pred HHHHHhcCCCCcccEEEecc---hhHHHHHHHHHhC-CeEEeecccccCcCCccchHhhccC----CCCCEEEEeCCCCC
Confidence 9988877664 4444433 3333234467789 999999875 45578999988 775 57899999999999
Q ss_pred ccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCc
Q 017726 150 TGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR 229 (367)
Q Consensus 150 tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~ 229 (367)
||.++| +++++ +|+++|+|++|+.+..+.++.. .|++++|+||+++ +.|+|++++++++++++.... .
T Consensus 154 tG~~~~-----~i~~~--~~~~li~D~a~~~~~~~~~~~~--~di~~~s~sK~~~-~~G~G~~~~~~~~~~~~~~~~--~ 221 (360)
T 1w23_A 154 YGTQYQ-----NFPEI--NHAPLIADMSSDILSRPLKVNQ--FGMIYAGAQKNLG-PSGVTVVIVKKDLLNTKVEQV--P 221 (360)
T ss_dssp TTEECS-----SCCCC--CSSCEEEECTTTTTSSCCCGGG--CSEEEEETTTTTS-CTTCEEEEEEHHHHCSCCTTC--C
T ss_pred cceecc-----ccccc--CCceEEEechhhcCCCCcCccc--CCEEEEEcccccC-CCCcEEEEEcHHHHhhcccCC--c
Confidence 999987 34446 9999999999998887666554 3899999999884 778999999999877665432 1
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHcC-C-ccccCCCccCCC
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWG-L-KNCTQKEEWFSD 306 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g-~-~~~~~~~~~~~~ 306 (367)
++.++..... ..+..++++...+.++.++++.+.+. ++++++++++++++++.+.|++++ + ....+ +...++
T Consensus 222 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~ 296 (360)
T 1w23_A 222 TMLQYATHIK----SDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAE-KGSRSL 296 (360)
T ss_dssp GGGCHHHHHH----TTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSC-GGGBCS
T ss_pred chhhhhhhhh----ccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCC-chhccC
Confidence 2222211110 11224568888888899999988776 588999999999999999999874 4 33211 112355
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHH
Q 017726 307 TVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~ 358 (367)
.++++++++..+..++.+.|.+ +||.+.+|... .+++|+++....+.++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~~~~--~~~iRis~~~~~~~~~ 345 (360)
T 1w23_A 297 MNVTFNLRNEELNQQFLAKAKE-QGFVGLNGHRS--VGGCRASIYNAVPIDA 345 (360)
T ss_dssp SEEEEECSSHHHHHHHHHHHHH-TTEESCBCCTT--TCSEEEECCTTSCHHH
T ss_pred cEEEEEcCCCccHHHHHHHHHH-CCeeeecCCCC--CCeEEEEecCCCCHHH
Confidence 5788888543345678888864 59999877542 4679999876555543
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-33 Score=252.48 Aligned_cols=319 Identities=10% Similarity=-0.010 Sum_probs=242.5
Q ss_pred CcccccC--CCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCe
Q 017726 9 KNHLFVP--GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR 86 (367)
Q Consensus 9 ~~~~~~~--~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~ 86 (367)
+.+.+.- .|.++++.+.+++.+.......| ......++|+.++++++++++ ++++++|+++++..++.+++.+||+
T Consensus 17 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y-~~~~~~~l~~~la~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~gd~ 94 (354)
T 3ly1_A 17 NPIRINFNENPLGMSPKAQAAARDAVVKANRY-AKNEILMLGNKLAAHHQVEAP-SILLTAGSSEGIRAAIEAYASLEAQ 94 (354)
T ss_dssp SCEECSSCCCSSCCCHHHHHHHHHTGGGTTSC-CHHHHHHHHHHHHHHTTSCGG-GEEEESHHHHHHHHHHHHHCCTTCE
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHHHhhCcCC-CCCchHHHHHHHHHHhCCChH-HEEEeCChHHHHHHHHHHHhCCCCe
Confidence 4444443 44567899999999876543333 245678999999999998654 5999999999999999999999999
Q ss_pred EEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhc
Q 017726 87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY 166 (367)
Q Consensus 87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~ 166 (367)
|++..+.|++.. ..++..|.+++.++.+.++.+|+++++++++++ +++++|++++|+||||.++|.+++.++++..
T Consensus 95 vl~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~--~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~ 170 (354)
T 3ly1_A 95 LVIPELTYGDGE--HFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAY--SGPSIVYLVNPNNPTGTITPADVIEPWIASK 170 (354)
T ss_dssp EEEESSSCTHHH--HHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTC--SSCEEEEEESSCTTTCCCCCHHHHHHHHHTC
T ss_pred EEECCCCchHHH--HHHHHcCCEEEEecCCCCCCCCHHHHHHHhccC--CCCCEEEEeCCCCCcCCCcCHHHHHHHHHhC
Confidence 999999887753 557788999999999888899999999999842 2679999999999999999988888877765
Q ss_pred CCCcEEEEeeeeccCceee---c----cccc-cceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeechHHH
Q 017726 167 RHPALFLVDGVSSICAIDF---R----MDEW-GIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDY 237 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~~~---~----~~~~-~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (367)
++|+++|+|++|+.+...- . .... +.++++.|+||+++ ++.++|++++++++++++.....
T Consensus 171 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~---------- 240 (354)
T 3ly1_A 171 PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRYVA---------- 240 (354)
T ss_dssp CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHHHHGGGTT----------
T ss_pred CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCHHHHHHHHHhcC----------
Confidence 5899999999987544321 1 1122 56799999999994 23447999999999888875321
Q ss_pred HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCC
Q 017726 238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI 317 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 317 (367)
.++++.....++.++++.. ..++++++++.++++++.+.|+++|+.+..+ .+.++++.++.
T Consensus 241 ----------~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~~~~~~-- 301 (354)
T 3ly1_A 241 ----------GEKINFSGVDAALASMNDS--AFITYSKKSNDVSRQILLKALEDLKLPYLPS-----EGNFVFHQLVV-- 301 (354)
T ss_dssp ----------CSCCCHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC-----CSSEEEEECSS--
T ss_pred ----------CCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHCCCeECCC-----CceEEEEECCC--
Confidence 2356766666666666533 2377888999999999999999988877654 33467888853
Q ss_pred CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 318 NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 318 ~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
+..++.+.|.+ +||.+. |..+..++++||++. ..++.+...++|+
T Consensus 302 ~~~~~~~~l~~-~gi~v~-g~~~~~~~~iRis~~-~~~~i~~~~~~l~ 346 (354)
T 3ly1_A 302 PLKDYQTHMAD-AGVLIG-RAFPPADNWCRISLG-TPQEMQWVADTMR 346 (354)
T ss_dssp CHHHHHHHHHH-TTEECC-CCCTTCTTEEEEECC-CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-CCEEEe-ecCCCCCCEEEEEcC-CHHHHHHHHHHHH
Confidence 77899999975 599998 654445678999964 4444555555444
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-33 Score=254.91 Aligned_cols=319 Identities=13% Similarity=0.054 Sum_probs=240.2
Q ss_pred ccccCCCCCChHHHHHHHccCCCCCC----C-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCC--
Q 017726 11 HLFVPGPVHIPDQVIRAMNRNNEDYR----S-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSP-- 83 (367)
Q Consensus 11 ~~~~~~p~~~~~~v~~a~~~~~~~~~----~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~-- 83 (367)
.++..++.++++.+.+++.+...... . +...+...++++++++++|.++. ++++++||++|+..++.++..+
T Consensus 33 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~i~~~~ggt~a~~~~~~~~~~~~~ 111 (397)
T 3f9t_A 33 NIFGSMCSNVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDA-YGHIVSGGTEANLMALRCIKNIWR 111 (397)
T ss_dssp CBCSCSCCCCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTC-EEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEecCCCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCC-CEEEecCcHHHHHHHHHHHHHHHH
Confidence 34555566677788888877544321 1 23456778899999999999765 4899999999999999887655
Q ss_pred -----------CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 84 -----------GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 84 -----------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
||+|++..+.|++.. ..++..|++++.++.++++.+|++++++++++ .++++|++++|+||||.
T Consensus 112 ~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~nptG~ 186 (397)
T 3f9t_A 112 EKRRKGLSKNEHPKIIVPITAHFSFE--KGREMMDLEYIYAPIKEDYTIDEKFVKDAVED---YDVDGIIGIAGTTELGT 186 (397)
T ss_dssp HHHHTTCCCCSSCEEEEETTCCTHHH--HHHHHHTCEEEEECBCTTSSBCHHHHHHHHHH---SCCCEEEEEBSCTTTCC
T ss_pred hhhhhcccCCCCeEEEECCcchhHHH--HHHHHcCceeEEEeeCCCCcCCHHHHHHHHhh---cCCeEEEEECCCCCCCC
Confidence 999999999888753 55677899999999998888999999999985 15699999999999999
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccCce--------------eeccccccceEEEecCCCcccCCCcceeeeeCHHH
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAI--------------DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKA 218 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~--------------~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~ 218 (367)
+.|+++|.++|++ +|+++|+|++|+.+.. +++... ++|+++.|+||++.++.++|+++++++.
T Consensus 187 ~~~l~~i~~l~~~--~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~ 263 (397)
T 3f9t_A 187 IDNIEELSKIAKE--NNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIG 263 (397)
T ss_dssp BCCHHHHHHHHHH--HTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGG
T ss_pred CCCHHHHHHHHHH--hCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEEeCHH
Confidence 9999999999999 9999999999986543 334444 7899999999999777788988886654
Q ss_pred -HHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccc
Q 017726 219 -LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNC 297 (367)
Q Consensus 219 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~ 297 (367)
.+.+.... . +... .. .....++.+.....++.+++..+...++++..++..++++++.+.|+++|+++.
T Consensus 264 ~~~~~~~~~-~-~~~~-------~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 333 (397)
T 3f9t_A 264 YKRYLDVDA-P-YLTE-------TR-QATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENNFKPV 333 (397)
T ss_dssp GGGGTCEEC-T-TSSS-------SE-ECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBS
T ss_pred HHHhhccCC-c-cccC-------CC-ccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
Confidence 33332110 0 0000 00 000112333345577788888887777888999999999999999999988765
Q ss_pred cCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 298 TQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
.+ ....++++..+ +..++.+.|.++ ||.+.++.. ++++||++....+.+++
T Consensus 334 ~~----~~~~~~~~~~~---~~~~~~~~l~~~-gi~v~~~~~---~~~~Ri~~~~~~~~e~i 384 (397)
T 3f9t_A 334 IE----PILNIVAIEDE---DYKEVCKKLRDR-GIYVSVCNC---VKALRIVVMPHIKREHI 384 (397)
T ss_dssp SC----CSSSEEEEECT---THHHHHHHHHHT-TCBCEECSS---SSEEEEECCTTCCHHHH
T ss_pred cC----CCccEEEEEeC---CHHHHHHHHHhC-CeEEeccCC---CCEEEEEEcCCCCHHHH
Confidence 54 23456777774 367899999766 999988654 47899998765555443
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-35 Score=265.69 Aligned_cols=323 Identities=12% Similarity=0.078 Sum_probs=242.5
Q ss_pred CCCccccc-CCCCCChHHHHHHHccCCCCC----------CCCcHHHHHHHHHHH-HHHHhcCCCCceEEecCChhHHHH
Q 017726 7 PGKNHLFV-PGPVHIPDQVIRAMNRNNEDY----------RSPAVPALTKTLLED-IKKIFKTTSGTPFLIPTTGTGAWE 74 (367)
Q Consensus 7 ~~~~~~~~-~~p~~~~~~v~~a~~~~~~~~----------~~~~~~~~~~~~~~~-la~~~~~~~~~~v~~~~ggt~al~ 74 (367)
|..++++. .+..++++.+.+++.+..... .++.......++++. +++++|.+ ++++++|+++|+.
T Consensus 7 ~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~---~v~~~~g~t~a~~ 83 (371)
T 2e7j_A 7 KDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD---VARVTNGAREAKF 83 (371)
T ss_dssp -CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS---EEEEESSHHHHHH
T ss_pred CCcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC---EEEEeCChHHHHH
Confidence 34455555 556678899999999865432 123345668899999 99999987 5999999999999
Q ss_pred HHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEe--CCCCCCCCHHHHHHHHhccCC-CCccEEEEEecCCCcc
Q 017726 75 SALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVE--SDWGEGAKLDVLASKLAADTA-HTIKAICIVHNETATG 151 (367)
Q Consensus 75 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~--~~~~~~~d~e~l~~~i~~~~~-~~~~lv~~~~~~n~tG 151 (367)
.++.+++.+||+|+++.++|++.. ..++..|++++.++ .++++.+|++++++++++... +++++|++++++||||
T Consensus 84 ~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG 161 (371)
T 2e7j_A 84 AVMHSLAKKDAWVVMDENCHYSSY--VAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYG 161 (371)
T ss_dssp HHHHHHCCTTCEEEEETTCCHHHH--HHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTC
T ss_pred HHHHHHhCCCCEEEEccCcchHHH--HHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCc
Confidence 999998999999999999988865 33678899999999 777788999999999984210 2679999999999999
Q ss_pred ccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHH-hccCCCCce
Q 017726 152 VTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEA-SKTAKSVRV 230 (367)
Q Consensus 152 ~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~-~~~~~~~~~ 230 (367)
.++|+++|.++|++ +|+++|+|++|+.+..+.+....+.|++++|+||+++++.++|+++++++++++ +...... .
T Consensus 162 ~~~~~~~i~~~~~~--~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~ 238 (371)
T 2e7j_A 162 NLPDVKKIAKVCSE--YDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKY-K 238 (371)
T ss_dssp CCCCHHHHHHHHHT--TTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSC-T
T ss_pred ccCCHHHHHHHHHH--cCCeEEEECccccCCCCCChhhcCCCEEEecCCcCCCCCCCcEEEEEechhhhhhccccccC-c
Confidence 99999999999999 999999999999887766665567899999999999888889999999988776 6543220 0
Q ss_pred eechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHcCCccccCCCccCCCce
Q 017726 231 FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERH--RRLGKATRLAVEAWGLKNCTQKEEWFSDTV 308 (367)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~--~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 308 (367)
..+ ..+ ..++++..+++++.++++.+.+ ++.++. .++++++.+.|+++|+++..+... .+.+
T Consensus 239 ~~~-----~~~-----~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~~ 302 (371)
T 2e7j_A 239 NKE-----VEL-----LGCTARGATIITLMASFPHVRE----RIKRWDEEVEKARRFAAEMEKLGIKQLGDNPH--NHDL 302 (371)
T ss_dssp TSB-----GGG-----TTCCCCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHHHHHHHTTCEEESSSSC--CSSE
T ss_pred ccc-----ccc-----ccCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCcEEecCCCc--cCce
Confidence 000 001 1345777777777788887655 456677 889999999999888877665321 3457
Q ss_pred EEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC------CCCcEEE-EeecCC-CCHHH
Q 017726 309 TAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK------VAGKVFR-IGHLGH-LNEVM 358 (367)
Q Consensus 309 ~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~------~~~~~iR-i~~~~~-~~~~~ 358 (367)
++++++ +..++.+.|. ++||.+.+ ..+ ..+.++| +++... .++++
T Consensus 303 ~~~~~~---~~~~~~~~l~-~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~ 355 (371)
T 2e7j_A 303 MFFHAE---VLYEISKKAK-GGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEE 355 (371)
T ss_dssp EEEECH---HHHHHHHHSS-SGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHH
T ss_pred EEEECC---CHHHHHHHHH-HCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHH
Confidence 888874 5678999887 55999887 211 1256799 998754 44443
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=257.56 Aligned_cols=300 Identities=18% Similarity=0.160 Sum_probs=219.8
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
+.++.+.+++.+.... ...|.......++|+.+++++ |.+ .+++|++|+|+++++.+++.+++++||+|+++.|
T Consensus 44 ~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p 123 (385)
T 1b5p_A 44 DTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSP 123 (385)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhcCCCCEEEEcCC
Confidence 4467777776654211 112222223456777777776 432 3356999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcC
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR 167 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~ 167 (367)
+|+++. ..++..|.+++.++.+. ++.+|+++++++++ +++++|++++|+||||.+++ +++|.++|++
T Consensus 124 ~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~-- 195 (385)
T 1b5p_A 124 YWVSYP--EMVRFAGGVVVEVETLPEEGFVPDPERVRRAIT----PRTKALVVNSPNNPTGAVYPKEVLEALARLAVE-- 195 (385)
T ss_dssp CCTHHH--HHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--
T ss_pred CchhHH--HHHHHcCCEEEEeecCcccCCCCCHHHHHHhcC----CCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHH--
Confidence 887643 55778899999999874 45789999999887 46799999999999999987 7888999999
Q ss_pred CCcEEEEeeeeccCcee---eccccc--cceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHH
Q 017726 168 HPALFLVDGVSSICAID---FRMDEW--GIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~---~~~~~~--~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (367)
+|++||+|++|+.+... .++... +.++++.|+||+++ ++| +|++++++++++++....
T Consensus 196 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~G~RiG~~~~~~~~~~~l~~~~-------------- 260 (385)
T 1b5p_A 196 HDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFA-MTGWRIGYACGPKEVIKAMASVS-------------- 260 (385)
T ss_dssp TTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTT-CGGGCCEEEECCHHHHHHHHHHH--------------
T ss_pred cCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcC-CcccceEEEEeCHHHHHHHHHHH--------------
Confidence 99999999998764331 122222 56899999999984 556 799999999887765321
Q ss_pred hhcCCccCCCCcHHHHHHHHHHHHH---HHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcC-CC
Q 017726 241 YNLGTFWPYTPSIQLLYGLRAALDL---IFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVP-SH 316 (367)
Q Consensus 241 ~~~~~~~~~~~~~~~~~al~~al~~---~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 316 (367)
..+ .++++.....++.++++. ..+ .+++.++++.++++++.+.|+++|+.+..+ .+++++++.++ .+
T Consensus 261 -~~~---~~~~~~~~~~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~~~~~~~~~~~~ 331 (385)
T 1b5p_A 261 -RQS---TTSPDTIAQWATLEALTNQEASRA-FVEMAREAYRRRRDLLLEGLTALGLKAVRP----SGAFYVLMDTSPIA 331 (385)
T ss_dssp -HTT---TCSCCHHHHHHHHHHHHCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTCCBCCC----SBTTEEEEECTTTC
T ss_pred -hhc---cCCCCHHHHHHHHHHHhCCCcchH-HHHHHHHHHHHHHHHHHHHHHHCCCeecCC----CeeEEEEEecCCCC
Confidence 001 123455444555555543 222 277888999999999999999888877765 34556777774 24
Q ss_pred CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeec
Q 017726 317 INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHL 351 (367)
Q Consensus 317 ~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~ 351 (367)
.+..++.+.|. ++||.+.+|..+..++++|||+.
T Consensus 332 ~~~~~l~~~l~-~~gv~v~~g~~f~~~~~iRis~~ 365 (385)
T 1b5p_A 332 PDEVRAAERLL-EAGVAVVPGTDFAAFGHVRLSYA 365 (385)
T ss_dssp SSHHHHHHHHH-HTTEECEESGGGTCTTEEEEECC
T ss_pred CCHHHHHHHHH-HCCeEEecccccCCCCeEEEEec
Confidence 67889999997 66999999865444678999975
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-34 Score=258.14 Aligned_cols=316 Identities=13% Similarity=0.079 Sum_probs=238.6
Q ss_pred ccccC--CCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEE
Q 017726 11 HLFVP--GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRII 88 (367)
Q Consensus 11 ~~~~~--~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl 88 (367)
+.+.. .|.++++.+++++.+.......|..... .++|+.+++++|++.+ ++++++|+++++..++.+++.+||+|+
T Consensus 33 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~-~~lr~~la~~~~~~~~-~v~~~~g~~~a~~~~~~~l~~~gd~vl 110 (365)
T 3get_A 33 IKLASNENPFGTPPKAIECLRQNANKAHLYPDDSM-IELKSTLAQKYKVQNE-NIIIGAGSDQVIEFAIHSKLNSKNAFL 110 (365)
T ss_dssp EECSSCCCTTCSCHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHTCCGG-GEEEESSHHHHHHHHHHHHCCTTCEEE
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHhhccCCCCCh-HHHHHHHHHHhCCCcc-eEEECCCHHHHHHHHHHHHhCCCCEEE
Confidence 44443 4456788999999886543222221122 6899999999998654 599999999999999999999999999
Q ss_pred EEeCCcchHHHHHHHHHhCCceEEEeC-CCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcC
Q 017726 89 SFLIGQFSLLWIDQQQRLNFNVDVVES-DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYR 167 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~ 167 (367)
+..+.|++.. ..++..|.+++.++. +.++ +|+++++++++ +++++|++++|+||||.++|.+++.++++..+
T Consensus 111 ~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~----~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~ 183 (365)
T 3get_A 111 QAGVTFAMYE--IYAKQCGAKCYKTQSITHNL-DEFKKLYETHK----DEIKLIFLCLPNNPLGECLDASEATEFIKGVN 183 (365)
T ss_dssp ECSSCCTHHH--HHHHHHTCEEEECSSSSCCH-HHHHHHHHHTT----TTEEEEEEESSCTTTCCCCCHHHHHHHHHTSC
T ss_pred EeCCChHHHH--HHHHHcCCEEEEEecCCCCC-CCHHHHHHHhC----CCCCEEEEcCCCCCCCCCcCHHHHHHHHHhCC
Confidence 9999887643 557788999999998 5677 99999999997 47899999999999999999999999998433
Q ss_pred CCcEEEEeeeeccCc------eeecc----ccccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeechHH
Q 017726 168 HPALFLVDGVSSICA------IDFRM----DEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~------~~~~~----~~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (367)
+|+++|+|++|+.+. ...+. ...+.++++.|+||+++ .+.++|++++++++++++.....
T Consensus 184 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~--------- 254 (365)
T 3get_A 184 EDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRA--------- 254 (365)
T ss_dssp TTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHHHHHSC---------
T ss_pred CCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCHHHHHHHHHhcC---------
Confidence 799999999988433 11111 12356799999999984 23347999999999887764311
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCC
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH 316 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 316 (367)
.++++.....++.++++.. ..++++++++.++++++.+.|+++|+.+..+ .+.+++++++..
T Consensus 255 -----------~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-----~~~~~~~~~~~~ 316 (365)
T 3get_A 255 -----------PFNVSNLALKAAVAAMDDD--EFTEKTLENNFSQMELYKEFAKKHNIKIIDS-----YTNFITYFFDEK 316 (365)
T ss_dssp -----------TTCSCHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHTTCEECCC-----SSSEEEEECSSS
T ss_pred -----------CCCcCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhCCCEECCC-----CCeEEEEECCCC
Confidence 2346666666666666632 3378889999999999999999998887654 234578888654
Q ss_pred CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 317 INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 317 ~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
+..++.+.|.++ ||.+.+|..+. ++++||++. ..++.+.+.++|++
T Consensus 317 -~~~~~~~~l~~~-gi~v~~g~~~~-~~~iRis~~-~~~~i~~l~~~l~~ 362 (365)
T 3get_A 317 -NSTDLSEKLLKK-GIIIRNLKSYG-LNAIRITIG-TSYENEKFFTEFDK 362 (365)
T ss_dssp -CHHHHHHHHHTT-TEECEECGGGT-CSEEEEECC-CHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHC-CEEEEECccCC-CCEEEEEcC-CHHHHHHHHHHHHH
Confidence 788999999765 99999886554 678999965 44555556655543
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=258.40 Aligned_cols=331 Identities=16% Similarity=0.118 Sum_probs=239.8
Q ss_pred CCCCcccccCCCCCChHHHHHHHccCCCCCC-CC--------cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHH
Q 017726 6 APGKNHLFVPGPVHIPDQVIRAMNRNNEDYR-SP--------AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESA 76 (367)
Q Consensus 6 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~-~~--------~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~ 76 (367)
.++..|++..++.+.|+.+.+++.+...... .+ ++.....++++.+++++|.+++ ++++++|+++++..+
T Consensus 26 ~~~~~yld~~~~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~~g~t~al~~a 104 (416)
T 1qz9_A 26 PEGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDG-EVVVTDTTSINLFKV 104 (416)
T ss_dssp CTTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTT-SEEECSCHHHHHHHH
T ss_pred CCCeEeecCCCcCCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcc-cEEEeCChhHHHHHH
Confidence 3567788877777778888888877543211 11 1236678999999999999754 589999999999888
Q ss_pred HHccC------CCCCeEEEEeC-CcchHH--HHHHHHHh--CCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEe
Q 017726 77 LTNTL------SPGDRIISFLI-GQFSLL--WIDQQQRL--NFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVH 145 (367)
Q Consensus 77 ~~~~~------~~gd~vl~~~~-~~~~~~--~~~~~~~~--g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~ 145 (367)
+.+++ .+||++++..+ .|.+.. +...++.. |++++.++. +++++++++ +++++|++++
T Consensus 105 l~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~~~l~~~i~----~~~~~v~~~~ 173 (416)
T 1qz9_A 105 LSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS-------PEELPQAID----QDTAVVMLTH 173 (416)
T ss_dssp HHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS-------GGGHHHHCS----TTEEEEEEES
T ss_pred HHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc-------HHHHHHHhC----CCceEEEEec
Confidence 87765 88997666555 444433 22334445 899988886 788998887 4679999999
Q ss_pred cCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcc-eeeeeCHHHHHHhcc
Q 017726 146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGM-GIVCASPKALEASKT 224 (367)
Q Consensus 146 ~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~-g~~~~~~~~~~~~~~ 224 (367)
++||||.+.|+++|.++|++ +|+++|+|++|+.+..+.+....++|++++|+||++.++.|+ |++++++++++++..
T Consensus 174 ~~nptG~~~~l~~i~~l~~~--~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~~~~~l~~ 251 (416)
T 1qz9_A 174 VNYKTGYMHDMQALTALSHE--CGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQ 251 (416)
T ss_dssp BCTTTCBBCCHHHHHHHHHH--HTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCC
T ss_pred cccCcccccCHHHHHHHHHH--cCCEEEEEccccccCcCCChhhcCCCEEEecCcccCCCCCCCeEEEEECHHHHhccCC
Confidence 99999999999999999999 999999999999887766655557899999999998777777 999999998776654
Q ss_pred CCCCceee----chHHHHHHhh--cCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc----CC
Q 017726 225 AKSVRVFF----DWKDYIKFYN--LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GL 294 (367)
Q Consensus 225 ~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~ 294 (367)
........ ++... ..+. ...+..++++...++++.++++.+.+.+++++.+++.++++++.+.|+++ |+
T Consensus 252 ~~~g~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~ 330 (416)
T 1qz9_A 252 PLSGWFGHSRQFAMEPR-YEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHEL 330 (416)
T ss_dssp SCCCGGGBCTTSCCCSS-CCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CccccCccccccCCCCc-cCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCe
Confidence 32210000 00000 0000 00122456888888888889998877788999999999999999999986 78
Q ss_pred ccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHH
Q 017726 295 KNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMF 359 (367)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~ 359 (367)
++..+........+++++++ +..++.+.|.++ ||.+.. ..+.++||++.. ..+.+|+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~---~~~~l~~~l~~~-gi~~~~----~~~~~lRis~~~~~~t~~~i 388 (416)
T 1qz9_A 331 TLVTPREHAKRGSHVSFEHP---EGYAVIQALIDR-GVIGDY----REPRIMRFGFTPLYTTFTEV 388 (416)
T ss_dssp EECSCSSGGGBCSEEEEECT---THHHHHHHHHTT-TEECEE----ETTTEEEEECCTTTCCHHHH
T ss_pred EEeCCCCHHHcCCEEEEecC---CHHHHHHHHHhC-CcEecc----CCCCeEEEeCcccCCCHHHH
Confidence 87765321122346788875 367899999755 998743 235689999763 4444433
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-33 Score=255.21 Aligned_cols=303 Identities=14% Similarity=0.099 Sum_probs=225.3
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cCC-CCce-EEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTP-FLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~~-~~~~-v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
+.++.+.+++.+.... ...|.......++++.+++++ |.+ ++++ +++++||++++..++.+++.+||+|++..
T Consensus 39 ~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~ 118 (389)
T 1gd9_A 39 DTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPT 118 (389)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcC
Confidence 3567777777664321 112222223456777777776 753 3356 99999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhc
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEY 166 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~ 166 (367)
+.|++.. ..++..|.+++.++.+. ++.+|+++++++++ +++++|++++|+||||.++| +++|.++|++
T Consensus 119 ~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~- 191 (389)
T 1gd9_A 119 PAFVSYA--PAVILAGGKPVEVPTYEEDEFRLNVDELKKYVT----DKTRALIINSPCNPTGAVLTKKDLEEIADFVVE- 191 (389)
T ss_dssp SCCTTHH--HHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH-
T ss_pred CCchhHH--HHHHHCCCEEEEeccCCccCCCCCHHHHHHhcC----cCceEEEEECCCCCCCcCCCHHHHHHHHHHHHH-
Confidence 9988854 45677899999999875 45689999999997 46799999999999999985 8889999999
Q ss_pred CCCcEEEEeeeeccCcee----ecccc----ccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHH
Q 017726 167 RHPALFLVDGVSSICAID----FRMDE----WGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~~----~~~~~----~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (367)
+|+++|+|++|+.+... .+... .+.|+++.|+||+++ ++| +|++++++++++++.....
T Consensus 192 -~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~--------- 260 (389)
T 1gd9_A 192 -HDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFA-MTGWRLGFVAAPSWIIERMVKFQM--------- 260 (389)
T ss_dssp -TTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTT-CGGGCCEEEECCHHHHHHHHHHHT---------
T ss_pred -cCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcC-CcccceEEEEECHHHHHHHHHHHh---------
Confidence 99999999999876431 12221 357999999999984 555 6999999998887764211
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS 315 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 315 (367)
+. .++.+.....++.++++....+ .+++++++++++++++.+.|+++|+++..+ .++.++++.++.
T Consensus 261 -------~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~~~~~~~~~~ 327 (389)
T 1gd9_A 261 -------YN--ATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKP----KGAFYIFPRIRD 327 (389)
T ss_dssp -------TT--TCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC----CBTTEECCBCGG
T ss_pred -------hh--ccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCeecCC----CeeeEEEEeccC
Confidence 11 2345665556666666643331 477888999999999999999988877665 345566677753
Q ss_pred -CCCHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecC
Q 017726 316 -HINSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLG 352 (367)
Q Consensus 316 -~~~~~~l~~~L~~~~gv~v~~g~~~~--~~~~iRi~~~~ 352 (367)
+.+..++.+.|.+++||.+.+|..+. .++++||++..
T Consensus 328 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~ 367 (389)
T 1gd9_A 328 TGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT 367 (389)
T ss_dssp GTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS
T ss_pred CCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC
Confidence 56788999999756799999875432 35689999765
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-33 Score=256.44 Aligned_cols=324 Identities=11% Similarity=0.007 Sum_probs=235.2
Q ss_pred cccccCCC--CCChHHHHHHHccCCCCC--CCCcHHHHHHHHHHHHHHHh----cCC-CC-ceEEecCChhHHHHHHHHc
Q 017726 10 NHLFVPGP--VHIPDQVIRAMNRNNEDY--RSPAVPALTKTLLEDIKKIF----KTT-SG-TPFLIPTTGTGAWESALTN 79 (367)
Q Consensus 10 ~~~~~~~p--~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~la~~~----~~~-~~-~~v~~~~ggt~al~~~~~~ 79 (367)
.+.+..|- .+.++.+.+++.+..... ..|.......++++.+++++ |.+ .+ +++++++|+++++..++.+
T Consensus 49 ~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~ 128 (404)
T 2o1b_A 49 LINMAVGIPDGPTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTC 128 (404)
T ss_dssp CEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHH
T ss_pred EEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHH
Confidence 34444442 345788888888765321 11221123457777777777 875 22 4699999999999999999
Q ss_pred cCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---
Q 017726 80 TLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN--- 155 (367)
Q Consensus 80 ~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~--- 155 (367)
++.+||+|++..|.|++.. ..++..|.+++.++.+. ++.+|+++++++++ +++++|++++|+||||.++|
T Consensus 129 l~~~gd~Vl~~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~----~~~~~v~l~~p~nptG~~~~~~~ 202 (404)
T 2o1b_A 129 VINPGDYVLLPDPGYTDYL--AGVLLADGKPVPLNLEPPHYLPDWSKVDSQII----DKTKLIYLTYPNNPTGSTATKEV 202 (404)
T ss_dssp HCCTTCEEEEEESCCSSHH--HHHHHTTCEEEEEECCTTTCCCCGGGSCHHHH----HHEEEEEECSSCTTTCCCCCHHH
T ss_pred hcCCCCEEEEcCCCchhHH--HHHHHCCCEEEEeccCcccCcCCHHHHHHhhc----cCceEEEEcCCCCCCCccCCHHH
Confidence 9999999999999888854 45677899999999875 34589999999987 36799999999999999986
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeeccCce---eecccc----ccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCC
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSSICAI---DFRMDE----WGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAK 226 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~~~~~---~~~~~~----~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~ 226 (367)
+++|.++|++ +|+++|+|++|+.+.. +.++.. .+.++++.|+||+++ ++| +|++++++++++++....
T Consensus 203 l~~l~~~~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~l~~~~ 279 (404)
T 2o1b_A 203 FDEAIAKFKG--TDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYN-MSGFRVGFAVGNKDMIQALKKYQ 279 (404)
T ss_dssp HHHHHHHHTT--SSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTT-CGGGCCEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhcc-CchhheEeEecCHHHHHHHHHHH
Confidence 6778899998 9999999999986432 122221 256899999999994 344 699999999988775321
Q ss_pred CCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCC
Q 017726 227 SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSD 306 (367)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 306 (367)
. . +.++++...+.++.++++.. +..+++++++++++++++.+.|+++|+.+..+ .++
T Consensus 280 -------------~---~--~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~g 336 (404)
T 2o1b_A 280 -------------T---H--TNAGMFGALQDAAIYALNHY-DDFLEEQSNVFKTRRDRFEAMLAKADLPFVHA----KGG 336 (404)
T ss_dssp -------------H---H--HCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCEECC----CBS
T ss_pred -------------h---h--ccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhcCCeecCC----Ccc
Confidence 0 0 12245665555555555543 22377888899999999999999988877665 355
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecCCCCHHHHHHhhhh
Q 017726 307 TVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~--~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
.+++++++++.+..++.++|.+++||.+.+|..+. .++++||++....++.+...+.|.
T Consensus 337 ~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~~l~ 397 (404)
T 2o1b_A 337 IYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLT 397 (404)
T ss_dssp SEEEEECCTTCCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCSCTTHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcCCHHHHHHHHHHHH
Confidence 56888887667788999998766699999875432 356899998775555554444443
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=256.12 Aligned_cols=297 Identities=19% Similarity=0.152 Sum_probs=220.4
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
+.++.+.+++.+.... ...|.......++|+.+++++ |.+ +++++++++|+++++..++.+++.+||+|+++.+
T Consensus 54 ~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~ 133 (389)
T 1o4s_A 54 PTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSP 133 (389)
T ss_dssp CCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 4567788887764432 112222233456777777776 664 3456999999999999999998999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcC
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR 167 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~ 167 (367)
.|++.. ..++..|.+++.++.+. ++.+|+++++++++ +++++|++++|+||||.++| +++|.++|++
T Consensus 134 ~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~-- 205 (389)
T 1o4s_A 134 VWVSYI--PQIILAGGTVNVVETFMSKNFQPSLEEVEGLLV----GKTKAVLINSPNNPTGVVYRREFLEGLVRLAKK-- 205 (389)
T ss_dssp CCTTHH--HHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--
T ss_pred CchhHH--HHHHHcCCEEEEEecCCccCCCCCHHHHHHhcc----cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHH--
Confidence 888754 45677899999999874 45789999999987 46799999999999999987 8889999999
Q ss_pred CCcEEEEeeeeccCcee---ecc---cc-ccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHH
Q 017726 168 HPALFLVDGVSSICAID---FRM---DE-WGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYI 238 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~---~~~---~~-~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (367)
+|+++|+|++|+.+... .+. .. .+.|+++.|+||+++ ++| +|++++++++++++....
T Consensus 206 ~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~l~~~~~~~~~l~~~~------------ 272 (389)
T 1o4s_A 206 RNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHS-MTGWRVGYLISSEKVATAVSKIQ------------ 272 (389)
T ss_dssp HTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTT-CGGGCCEEEECCHHHHHHHHHHH------------
T ss_pred cCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcC-CcccceEEEEeCHHHHHHHHHHh------------
Confidence 99999999999865431 111 11 367999999999994 555 799999999887765321
Q ss_pred HHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCC
Q 017726 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHIN 318 (367)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (367)
..+ .++.+.....+ +...+. .+++++++++.++++++.+.|+++|+++..+ ..+.+++++++ .+
T Consensus 273 ---~~~---~~~~~~~~~~a---~~~~l~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~~~~~~~~~--~~ 336 (389)
T 1o4s_A 273 ---SHT---TSCINTVAQYA---ALKALE-VDNSYMVQTFKERKNFVVERLKKMGVKFVEP----EGAFYLFFKVR--GD 336 (389)
T ss_dssp ---HHH---TCSCCHHHHHH---HHHHTT-CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCC----SBSSEEEEECS--SC
T ss_pred ---hhc---ccCCCHHHHHH---HHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCeeecC----CcceEEEEeCC--CC
Confidence 001 12234433233 333333 2478889999999999999999988877655 34556777875 57
Q ss_pred HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC
Q 017726 319 SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352 (367)
Q Consensus 319 ~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~ 352 (367)
..++.++|.+++||.+.+|..+..++++||++..
T Consensus 337 ~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~ 370 (389)
T 1o4s_A 337 DVKFCERLLEEKKVALVPGSAFLKPGFVRLSFAT 370 (389)
T ss_dssp HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS
T ss_pred HHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeC
Confidence 7899999975569999987544345689999764
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=255.66 Aligned_cols=315 Identities=12% Similarity=0.028 Sum_probs=228.1
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHH----hcCC-CCc-eEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKI----FKTT-SGT-PFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~----~~~~-~~~-~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
+.++.+.+++.+.... ...|.......++++.++++ +|.+ +++ ++++++|+++++..++.+++.+||+|++..
T Consensus 43 ~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~ 122 (386)
T 1u08_A 43 DGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFD 122 (386)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeC
Confidence 3567888887764322 11222112234566666666 4754 334 699999999999999999889999999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcC
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR 167 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~ 167 (367)
|.|++.. ..++..|.+++.++.+. ++.+|+++++++++ +++++|++++|+||||.++| +++|.++|++
T Consensus 123 p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~----~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~-- 194 (386)
T 1u08_A 123 PSYDSYA--PAIALSGGIVKRMALQPPHFRVDWQEFAALLS----ERTRLVILNTPHNPSATVWQQADFAALWQAIAG-- 194 (386)
T ss_dssp SCCTTHH--HHHHHTTCEEEEEECCTTTCCCCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTT--
T ss_pred CCchhHH--HHHHHcCCEEEEeecCcccCcCCHHHHHHhhc----ccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHH--
Confidence 9988753 45678899999999875 46789999999996 47799999999999999986 5788999998
Q ss_pred CCcEEEEeeeeccCce------ee-ccc-cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHH
Q 017726 168 HPALFLVDGVSSICAI------DF-RMD-EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDY 237 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~------~~-~~~-~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (367)
+|+++|+|++|+.+.. ++ ... ..+.|+++.|+||+++ ++| +|++++++++++++....
T Consensus 195 ~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~----------- 262 (386)
T 1u08_A 195 HEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYH-MTGWKVGYCVAPAPISAEIRKVH----------- 262 (386)
T ss_dssp SCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTT-CGGGCCEEEECCHHHHHHHHHHH-----------
T ss_pred cCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcC-CcccceEEEEcCHHHHHHHHHHH-----------
Confidence 9999999999976322 11 111 2368999999999985 555 799999999887775321
Q ss_pred HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCC-
Q 017726 238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH- 316 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~- 316 (367)
. . ..++.+...+.++.++++.. +..++++++++.++++++.+.|++.|+++..+ .++.++++++++.
T Consensus 263 --~---~--~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~g~~~~~~~~~~~ 330 (386)
T 1u08_A 263 --Q---Y--LTFSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNESRLEILPC----EGTYFLLVDYSAVS 330 (386)
T ss_dssp --H---H--HTSSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSSSCEECCC----CBSSEEEEECTTTC
T ss_pred --H---h--hccCCChHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHCCCeecCC----CceEEEEEecCCCC
Confidence 0 0 02335554555555566543 23377788899999999999998888887665 3456788888643
Q ss_pred -CCHHHHHHHHHhhCCeEEccCCCC----CCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 317 -INSSEIVRRAWQRYNLSLGLGLNK----VAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 317 -~~~~~l~~~L~~~~gv~v~~g~~~----~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
.+..++.++|.+++||.+.+|..+ ..++++||++....++.+...+.|.
T Consensus 331 ~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~i~~~~~~l~ 384 (386)
T 1u08_A 331 TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLR 384 (386)
T ss_dssp CSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcCCHHHHHHHHHHHh
Confidence 578889998876779999987432 2356899998653333444444444
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=250.46 Aligned_cols=316 Identities=13% Similarity=0.133 Sum_probs=236.5
Q ss_pred CcccccCC--CCCChHHHHHHHccCCC--C-CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCC
Q 017726 9 KNHLFVPG--PVHIPDQVIRAMNRNNE--D-YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSP 83 (367)
Q Consensus 9 ~~~~~~~~--p~~~~~~v~~a~~~~~~--~-~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~ 83 (367)
+.+.+..+ |.+.++.+.+++.+... . +.++. ....++|+.+++++|.++++++++|+|+++++..++.+++.+
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~--~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~ 108 (367)
T 3euc_A 31 GLVKLDAMENPYRLPPALRSELAARLGEVALNRYPV--PSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAARP 108 (367)
T ss_dssp TCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC--CCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHTCCT
T ss_pred CeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC--CcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHHcCC
Confidence 44555443 34578889998887543 1 22222 246799999999999854456999999999999999999999
Q ss_pred CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHH
Q 017726 84 GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVR 160 (367)
Q Consensus 84 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~ 160 (367)
||+|++..+.|++.. ..++..|.+++.++.+.++.+|++++++++++ .++++|++++|+||||.++| +++|.
T Consensus 109 gd~Vl~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~~~~l~~i~ 183 (367)
T 3euc_A 109 GAKVMAPVPGFVMYA--MSAQFAGLEFVGVPLRADFTLDRGAMLAAMAE---HQPAIVYLAYPNNPTGNLFDAADMEAIV 183 (367)
T ss_dssp TCEEEEEESCSCCSC--HHHHTTTCEEEEEECCTTSCCCHHHHHHHHHH---HCCSEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred CCEEEEcCCCHHHHH--HHHHHcCCeEEEecCCCCCCCCHHHHHHHhhc---cCCCEEEEcCCCCCCCCCCCHHHHHHHH
Confidence 999999999888753 44678899999999998888999999999985 25799999999999999976 56677
Q ss_pred HHHHhcCC--CcEEEEeeeeccCcee---eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechH
Q 017726 161 KLLDEYRH--PALFLVDGVSSICAID---FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 161 ~~~~~~~~--~~~vi~D~~~~~~~~~---~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (367)
++|++ + |+++|+|++|+..... ......+.++++.|+||+..++.++|++++++++++++.....
T Consensus 184 ~~~~~--~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~~-------- 253 (367)
T 3euc_A 184 RAAQG--SVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAGIRLGYVAGDPQWLEQLDKVRP-------- 253 (367)
T ss_dssp HHTBT--TSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCSCCEEEEEECHHHHHHHGGGCC--------
T ss_pred Hhhhh--cCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhhcccccCceeeeeCHHHHHHHHHhCC--------
Confidence 77887 8 9999999998753211 1223345679999999983223346999999999888764321
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcC
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~ 314 (367)
.++++...+.++.++++. ...+++.+++..++++++.+.|+++ |+.+..+ .+.++++.++
T Consensus 254 ------------~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-----~~~~~~~~~~ 314 (367)
T 3euc_A 254 ------------PYNVNVLTEATALFALEH--VAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPS-----AANFLLARVP 314 (367)
T ss_dssp ------------SSCCCHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCC-----SSSEEEEECS
T ss_pred ------------CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCC-----CCeEEEEECC
Confidence 334666666666666665 2237788899999999999999998 8886543 3446778875
Q ss_pred CCCCHHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 315 SHINSSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 315 ~~~~~~~l~~~L~~~~gv~v~~g~~--~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
+..++.+.|. ++||.+.+|.. +..++++||++. ..++.+...++|+
T Consensus 315 ---~~~~l~~~l~-~~gi~v~~~~~~~~~~~~~iRis~~-~~~~i~~~~~~l~ 362 (367)
T 3euc_A 315 ---DAAQTFDRLL-ARKVLIKNVSKMHPLLANCLRVTVS-TPEENAQFLEAFA 362 (367)
T ss_dssp ---CHHHHHHHHH-TTTEECEECGGGCGGGTTEEEEECC-CHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHH-HCCeEEEECCccCCCCCCEEEEecC-CHHHHHHHHHHHH
Confidence 6789999986 45999998754 334578999954 4455555555554
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-33 Score=253.59 Aligned_cols=292 Identities=14% Similarity=0.117 Sum_probs=217.8
Q ss_pred ChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhc----CC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeCC
Q 017726 20 IPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFK----TT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIG 93 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~----~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~ 93 (367)
.++.+.+++.+.... ...|.......++++.++++++ .+ .++++++++|+++++..++.+++.+||+|++..|+
T Consensus 43 ~~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~ 122 (370)
T 2z61_A 43 TPKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPC 122 (370)
T ss_dssp CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSC
T ss_pred CCHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 467788887764322 1122222334577777777775 22 33569999999999999999989999999999999
Q ss_pred cchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEE
Q 017726 94 QFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFL 173 (367)
Q Consensus 94 ~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi 173 (367)
|++.. ..++..|.+++.++ +|+++++++++ +++++|++++|+||||.++|.+ |.++|++ +|+++|
T Consensus 123 ~~~~~--~~~~~~g~~~~~v~------~d~~~l~~~l~----~~~~~v~~~~p~nptG~~~~~~-l~~~~~~--~~~~li 187 (370)
T 2z61_A 123 YPCYK--NFIRFLGAKPVFCD------FTVESLEEALS----DKTKAIIINSPSNPLGEVIDRE-IYEFAYE--NIPYII 187 (370)
T ss_dssp CTHHH--HHHHHTTCEEEEEC------SSHHHHHHHCC----SSEEEEEEESSCTTTCCCCCHH-HHHHHHH--HCSEEE
T ss_pred chhHH--HHHHHcCCEEEEeC------CCHHHHHHhcc----cCceEEEEcCCCCCcCcccCHH-HHHHHHH--cCCEEE
Confidence 88754 45677899998887 68999999987 4679999999999999999999 9999999 999999
Q ss_pred EeeeeccCce---eeccc----cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcC
Q 017726 174 VDGVSSICAI---DFRMD----EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLG 244 (367)
Q Consensus 174 ~D~~~~~~~~---~~~~~----~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (367)
+|++|+.+.. +.+.. ..+.|+++.|+||+++ ++| +|++++++++++++..... .
T Consensus 188 ~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~~----------------~ 250 (370)
T 2z61_A 188 SDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYA-MTGWRIGYVISNDEIIEAILKLQQ----------------N 250 (370)
T ss_dssp EECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTT-CGGGCCEEEECCHHHHHHHHHHHH----------------H
T ss_pred EEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccC-CccceEEEEEECHHHHHHHHHHHh----------------h
Confidence 9999986543 12222 2367999999999994 556 7999999998887753210 0
Q ss_pred CccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHH
Q 017726 245 TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVR 324 (367)
Q Consensus 245 ~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 324 (367)
..++++...+.++.++++.+.+..++++++++.++++++.+.|+++|+++..+ .++.++++.+++ +..++.+
T Consensus 251 --~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~~~~~~~~~~--~~~~~~~ 322 (370)
T 2z61_A 251 --LFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFGWEVNNP----IGAYYVFPNIGE--DGREFAY 322 (370)
T ss_dssp --HTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCC----CBTTEECCBCSS--CHHHHHH
T ss_pred --cccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCC----CcceEEEEecCC--CHHHHHH
Confidence 02245665556666666542233477888899999999999999988777655 345566677753 6788999
Q ss_pred HHHhhCCeEEccCCCCC--CCcEEEEeec
Q 017726 325 RAWQRYNLSLGLGLNKV--AGKVFRIGHL 351 (367)
Q Consensus 325 ~L~~~~gv~v~~g~~~~--~~~~iRi~~~ 351 (367)
+|.+++||.+.+|..+. ..+++||++.
T Consensus 323 ~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~ 351 (370)
T 2z61_A 323 KLLKEKFVALTPGIGFGSKGKNYIRISYA 351 (370)
T ss_dssp HHHHHHCEECEEGGGGCGGGSSBEEEECC
T ss_pred HHHHhCCEEEeCchhhCCCCCCEEEEEEe
Confidence 99755699999875432 2568999977
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-33 Score=253.49 Aligned_cols=309 Identities=18% Similarity=0.177 Sum_probs=228.9
Q ss_pred CChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH
Q 017726 19 HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL 98 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~ 98 (367)
+.++.+.+++.+.......|.......++++.++++++.++++ +++++||++++..++.+++.+||+|+++.+.|++..
T Consensus 38 ~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~~~-v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~ 116 (381)
T 1v2d_A 38 PPPPFLLEAVRRALGRQDQYAPPAGLPALREALAEEFAVEPES-VVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYL 116 (381)
T ss_dssp CCCHHHHHHHHHHTTTSCSCCCTTCCHHHHHHHHHHHTSCGGG-EEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhcCCChhh-EEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHH
Confidence 3567777777765432112222234678999999999987544 999999999999999998899999999999888754
Q ss_pred HHHHHHHhCCceEEEeCC---CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCCCcEE
Q 017726 99 WIDQQQRLNFNVDVVESD---WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALF 172 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~---~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~v 172 (367)
..++..|.+++.++.+ .++.+|+++++++++ +++++|++++|+||||.++| +++|.++|++ +|+++
T Consensus 117 --~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~--~~~~l 188 (381)
T 1v2d_A 117 --PDAFLAGAKARLVRLDLTPEGFRLDLSALEKALT----PRTRALLLNTPMNPTGLVFGERELEAIARLARA--HDLFL 188 (381)
T ss_dssp --HHHHHTTCEEEEEECEEETTEEECCHHHHHTTCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--TTCEE
T ss_pred --HHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcC----cCCEEEEECCCCCCCCCccCHHHHHHHHHHHHH--cCCEE
Confidence 4577889999999986 456789999999886 46799999999999999986 7889999999 99999
Q ss_pred EEeeeeccCce---eeccc--cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCC
Q 017726 173 LVDGVSSICAI---DFRMD--EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGT 245 (367)
Q Consensus 173 i~D~~~~~~~~---~~~~~--~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (367)
|+|++|+.+.. ..++. ..+.|+++.|+||+++ ++| +|++++++++++.+.... ..
T Consensus 189 i~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~-------------~~---- 250 (381)
T 1v2d_A 189 ISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLE-ATGYRVGWIVGPKEFMPRLAGMR-------------QW---- 250 (381)
T ss_dssp EEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTT-CGGGCCEEEECCTTTHHHHHHHH-------------HH----
T ss_pred EEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcC-CcccceEEEEeCHHHHHHHHHHH-------------hh----
Confidence 99999985432 12222 2468999999999984 556 799999998877765320 00
Q ss_pred ccCCCCcHHHHHHHHHHHHHHH-HhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHH
Q 017726 246 FWPYTPSIQLLYGLRAALDLIF-EEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVR 324 (367)
Q Consensus 246 ~~~~~~~~~~~~al~~al~~~~-~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 324 (367)
..++++...+.++.++++... +.++++++++++++++++.+.|++.|+++..+ ..+.++++++++. + +.+
T Consensus 251 -~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~~~~~~~~~~~-~---~~~ 321 (381)
T 1v2d_A 251 -TSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVP----EGTYFLMAELPGW-D---AFR 321 (381)
T ss_dssp -HTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECC----SBSSEEEEECTTC-C---HHH
T ss_pred -cccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHCCCEecCC----CcceEEEEecChH-h---HHH
Confidence 123456666666677777553 33478889999999999999999988888765 3455778887533 2 545
Q ss_pred HHHhhCCeEEccCCCCC----CCcEEEEeecCCCCHHHHHHhhh
Q 017726 325 RAWQRYNLSLGLGLNKV----AGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 325 ~L~~~~gv~v~~g~~~~----~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
.| +++||.+.+|..+. .++++||++....++.+...+.|
T Consensus 322 ~l-~~~gi~v~~g~~~~~~~~~~~~iRi~~~~~~~~i~~~~~~l 364 (381)
T 1v2d_A 322 LV-EEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERL 364 (381)
T ss_dssp HH-HHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHH
T ss_pred HH-HhCCEEEecchHhCCCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 45 56699999875432 35689999766333333333333
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=253.41 Aligned_cols=302 Identities=12% Similarity=0.068 Sum_probs=221.9
Q ss_pred CChHHHHHHHccCCCCC--CCCcHHHHHHHHHHHHHHHh----cCC-CC-ceEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 19 HIPDQVIRAMNRNNEDY--RSPAVPALTKTLLEDIKKIF----KTT-SG-TPFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~la~~~----~~~-~~-~~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
+.++.+.+++.+..... ..|.......++++.+++++ |.+ .+ +++++++|+++++..++.+++.+||+|++.
T Consensus 50 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~ 129 (412)
T 2x5d_A 50 PTPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVP 129 (412)
T ss_dssp CCCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhCCCCCEEEEc
Confidence 46788999988865431 12222233567888888887 763 22 469999999999999999989999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHh
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE 165 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~ 165 (367)
.|.|++.. ..++..|.+++.++.+.+ +.+|+++++++++ +++++|++++|+||||.++| +++|.++|++
T Consensus 130 ~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~ 203 (412)
T 2x5d_A 130 NPSYPIHI--YGAVIAGAQVRSVPLVPGIDFFNELERAIRESI----PKPRMMILGFPSNPTAQCVELDFFERVVALAKQ 203 (412)
T ss_dssp ESCCHHHH--HHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEE----SCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CCCchhHH--HHHHHcCCEEEEeecCCccCCCCCHHHHHHhcc----cCceEEEECCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 99888753 456778999999998764 2368899999887 46799999999999999987 5779999999
Q ss_pred cCCCcEEEEeeeeccCce----eecccc----ccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechH
Q 017726 166 YRHPALFLVDGVSSICAI----DFRMDE----WGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~----~~~~~~----~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (367)
+|+++|+|++|+.+.. ..++.. .+.++++.|+||+++ ++| +|++++++++++++....
T Consensus 204 --~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~--------- 271 (412)
T 2x5d_A 204 --YDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYN-MAGWRIGFMVGNPELVSALARIK--------- 271 (412)
T ss_dssp --HTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCS-CTTSCCEEEEECHHHHHHHHHHH---------
T ss_pred --cCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccC-CcccceEEEEcCHHHHHHHHHHH---------
Confidence 9999999999987542 112211 367899999999995 344 699999999988776321
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS 315 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 315 (367)
. . ..++.+...+.++.++++... ..+++++++++++++++.+.|+++|+.+..+ .++.++++++++
T Consensus 272 ----~---~--~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~g~~~~~~~~~ 337 (412)
T 2x5d_A 272 ----S---Y--HDYGTFTPLQVAAIAALEGDQ-QCVRDIARQYQQRRDVLVKGLREAGWMVENP----KASMYVWAKIPE 337 (412)
T ss_dssp ----H---H--HCCCCCHHHHHHHHHHHHSCS-HHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC----SBSSEEEEECCT
T ss_pred ----h---h--hccCCCHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHCCCEecCC----CeeeEEEEEcCC
Confidence 0 0 023456555555555554321 2267888899999999999999888877655 345678888865
Q ss_pred CC---CHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecC
Q 017726 316 HI---NSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLG 352 (367)
Q Consensus 316 ~~---~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~ 352 (367)
+. +..++++.|.+++||.+.+|..+ ..++++||++..
T Consensus 338 ~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~ 379 (412)
T 2x5d_A 338 PYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE 379 (412)
T ss_dssp TTGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS
T ss_pred ccCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC
Confidence 65 67889999976669999987543 235689999866
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=255.56 Aligned_cols=326 Identities=13% Similarity=0.077 Sum_probs=234.8
Q ss_pred CcccccCCC--CCChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHc
Q 017726 9 KNHLFVPGP--VHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTN 79 (367)
Q Consensus 9 ~~~~~~~~p--~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~ 79 (367)
+.+.+..|- .+.|+.+.+++.+.... ...|.......++++.+++++ |.+ ++++|++|+|+++|+..++.+
T Consensus 58 ~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~ 137 (447)
T 3b46_A 58 ELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMG 137 (447)
T ss_dssp CCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHH
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHH
Confidence 345555542 24567888888775432 112222223457777777776 433 334699999999999999999
Q ss_pred cCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC------------CCCCCHHHHHHHHhccCCCCccEEEEEecC
Q 017726 80 TLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW------------GEGAKLDVLASKLAADTAHTIKAICIVHNE 147 (367)
Q Consensus 80 ~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~------------~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~ 147 (367)
++.+||+|++..|.|++.. ..++..|.+++.++.+. ++.+|+++++++++ +++++|++++|+
T Consensus 138 l~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~v~l~~p~ 211 (447)
T 3b46_A 138 LLNAGDEVIVFEPFFDQYI--PNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT----SKTKAVIINTPH 211 (447)
T ss_dssp HCCTTCEEEEEESCCTTHH--HHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC----TTEEEEEEESSC
T ss_pred HcCCCCEEEEeCCCchhHH--HHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhc----cCCeEEEEeCCC
Confidence 9999999999999888753 45677899999998754 35789999999887 478999999999
Q ss_pred CCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccCcee---ecc-----ccccceEEEecCCCcccCCCc--ceeeee
Q 017726 148 TATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAID---FRM-----DEWGIDVALTGSQKALSLPTG--MGIVCA 214 (367)
Q Consensus 148 n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~---~~~-----~~~~~d~~~~s~~K~~~g~~g--~g~~~~ 214 (367)
||||.+++ +++|.++|++ +|+++|+|++|+.+... .++ ...+.++++.|+||+++ ++| +|++++
T Consensus 212 nptG~~~~~~~l~~i~~l~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~-~~G~riG~~~~ 288 (447)
T 3b46_A 212 NPIGKVFTREELTTLGNICVK--HNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFA-ATGWRIGWVLS 288 (447)
T ss_dssp TTTCCCCCHHHHHHHHHHHHH--TTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTT-CTTSCCEEEEC
T ss_pred CCCCcccCHHHHHHHHHHHHH--cCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcC-CcchhhEEEEe
Confidence 99999974 7889999999 99999999999864321 111 12368999999999985 445 799999
Q ss_pred -CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHc
Q 017726 215 -SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 215 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~ 292 (367)
++++++.+.... . . ..++.+.....++.++++.....+ +++++++++++++++.+.|+++
T Consensus 289 ~~~~l~~~l~~~~-------------~---~--~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 350 (447)
T 3b46_A 289 LNAELLSYAAKAH-------------T---R--ICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL 350 (447)
T ss_dssp SCHHHHHHHHHHH-------------H---H--HTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-------------h---h--ccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999887765320 0 0 123455555666677777654333 7888999999999999999999
Q ss_pred CCccccCCCccCCCceEEEEcCCC---------------CCHHHHHHHHHhhCCeEEccCCCCC-------CCcEEEEee
Q 017726 293 GLKNCTQKEEWFSDTVTAVIVPSH---------------INSSEIVRRAWQRYNLSLGLGLNKV-------AGKVFRIGH 350 (367)
Q Consensus 293 g~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~L~~~~gv~v~~g~~~~-------~~~~iRi~~ 350 (367)
|+++..+ .++.+++++++.. .+..+++++|.+++||.+.+|..+. .++++||++
T Consensus 351 g~~~~~~----~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~ 426 (447)
T 3b46_A 351 GLPYTAP----EGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAV 426 (447)
T ss_dssp TCCEECC----SBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEEC
T ss_pred CCeecCC----CeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEE
Confidence 8887765 3456778887531 3456899989877799999874332 157899998
Q ss_pred cCCCCHHHHHHhhhh
Q 017726 351 LGHLNEVMFNFQLLF 365 (367)
Q Consensus 351 ~~~~~~~~~~~~~l~ 365 (367)
....++.+...+.|.
T Consensus 427 ~~~~e~l~~~~~~l~ 441 (447)
T 3b46_A 427 CKDDAYLENAVERLK 441 (447)
T ss_dssp CSCHHHHHHHHHHGG
T ss_pred eCCHHHHHHHHHHHH
Confidence 653333344444443
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=251.01 Aligned_cols=299 Identities=14% Similarity=0.087 Sum_probs=223.3
Q ss_pred ChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHh----cCC-CCc-eEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 20 IPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIF----KTT-SGT-PFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~----~~~-~~~-~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
.++.+.+++.+.... ...|.......++++.+++++ |.+ +++ ++++++|+++++..++.+++.+||+|++..
T Consensus 39 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~ 118 (376)
T 2dou_A 39 PPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALTEPEDLLLLPE 118 (376)
T ss_dssp CCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEES
T ss_pred CCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhcCCCCEEEECC
Confidence 567888888876532 223333356778999999888 875 323 699999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCC
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRH 168 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~ 168 (367)
|.|++.. ..++..|.+++.++.+.++.+|+++++++++ +++++|++++|+||||.++| +++|.++|++ +
T Consensus 119 p~y~~~~--~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~--~ 190 (376)
T 2dou_A 119 VAYPSYF--GAARVASLRTFLIPLREDGLADLKAVPEGVW----REAKVLLLNYPNNPTGAVADWGYFEEALGLARK--H 190 (376)
T ss_dssp SCCHHHH--HHHHHTTCEEEEECBCTTSSBCGGGSCHHHH----HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHH--T
T ss_pred CCcHhHH--HHHHHcCCEEEEeeCCCCCCCCHHHHHHhhc----cCceEEEECCCCCCcCccCCHHHHHHHHHHHHH--c
Confidence 9887753 4567789999999985455689999999987 36799999999999999987 5678899999 9
Q ss_pred CcEEEEeeeeccCce---e---ecc-ccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHH
Q 017726 169 PALFLVDGVSSICAI---D---FRM-DEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIK 239 (367)
Q Consensus 169 ~~~vi~D~~~~~~~~---~---~~~-~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (367)
|+++|+|++|+.+.. . ... ...+.++++.|+||+++ ++| +|++++++++++++....
T Consensus 191 ~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~------------- 256 (376)
T 2dou_A 191 GLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYN-LAGFRLGFALGSEEALARLERVK------------- 256 (376)
T ss_dssp TCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHT-CGGGCCEEEEECHHHHHHHHHHH-------------
T ss_pred CCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcC-ChhheeEEEecCHHHHHHHHHHH-------------
Confidence 999999999986432 1 111 12356899999999994 344 699999999988776321
Q ss_pred HhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCH
Q 017726 240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINS 319 (367)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (367)
.. +.++.+...+.++.++++.. +..+++.+++++++++++.+.|++. +.+..+ .++.+++++++++.+.
T Consensus 257 ~~-----~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~----~~~~~~~~~~~~~~~~ 325 (376)
T 2dou_A 257 GV-----IDFNQYAGVLRMGVEALKTP-KEVVRGYARVYRERALGMAEALKGV-LSLLPP----RATMYLWGRLPEGVDD 325 (376)
T ss_dssp HH-----HCCCSCHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHHHHTTT-SEECCC----CBSSEEEEECCTTCCH
T ss_pred Hh-----cccCCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHh-cCccCC----CeeEEEEEECCCCCCH
Confidence 00 01234554445555555432 2236778888999999999999887 666544 3556788888766778
Q ss_pred HHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecC
Q 017726 320 SEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLG 352 (367)
Q Consensus 320 ~~l~~~L~~~~gv~v~~g~~~~--~~~~iRi~~~~ 352 (367)
.++.+.|.++ ||.+.+|..+. .++++||++..
T Consensus 326 ~~~~~~l~~~-gi~v~~g~~f~~~~~~~~Ris~~~ 359 (376)
T 2dou_A 326 LEFGLRLVER-GVALAPGRGFGPGGKGFVRIALVR 359 (376)
T ss_dssp HHHHHHHHHT-TEECEEGGGGCGGGTTEEEEECCS
T ss_pred HHHHHHHHHC-CEEEcCchhhCCCCCCeEEEEecC
Confidence 8999999877 99999875432 35789999765
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-32 Score=242.55 Aligned_cols=304 Identities=11% Similarity=0.035 Sum_probs=227.1
Q ss_pred CCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcc
Q 017726 16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF 95 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~ 95 (367)
.|.++++.+.+++.+.......|. .....++|+.++++++.+++ ++++|+|+++++..++.++ +||+|++..|.|+
T Consensus 26 ~~~~~~~~v~~a~~~~~~~~~~y~-~~~~~~lr~~la~~~~~~~~-~i~~t~G~~~~l~~~~~~~--~gd~vl~~~p~~~ 101 (337)
T 3p1t_A 26 NPEAVEPRVQAAIAAAAARINRYP-FDAEPRVMRKLAEHFSCPED-NLMLVRGIDECFDRISAEF--SSMRFVTAWPGFD 101 (337)
T ss_dssp CCSCCCHHHHHHHHHHGGGTTSCC-TTHHHHHHHHHHHHHTSCGG-GEEEESHHHHHHHHHHHHS--TTSEEEEESSSCS
T ss_pred CCCCCCHHHHHHHHHhhhhhccCC-CCchHHHHHHHHHHhCcCHH-HEEEeCCHHHHHHHHHHhc--CCCeEEEeCCCcH
Confidence 466788999999888654322222 35678999999999998764 5999999999999999887 9999999999888
Q ss_pred hHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEe
Q 017726 96 SLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD 175 (367)
Q Consensus 96 ~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D 175 (367)
+.. ..++..|++++.++.+.++.+|+++++++ .+++++++++|+||||.++|++++.++|++ +++ +++|
T Consensus 102 ~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~--~~~-~ivD 170 (337)
T 3p1t_A 102 GYR--ARIAVSGLRHFEIGLTDDLLLDPNDLAQV------SRDDCVVLANPSNPTGQALSAGELDQLRQR--AGK-LLID 170 (337)
T ss_dssp HHH--HHHTTSCCEEEEECBCTTSSBCHHHHTTC------CTTEEEEEESSCTTTCCCCCHHHHHHHHHH--CSE-EEEE
T ss_pred HHH--HHHHHcCCEEEEecCCCCCCCCHHHHHhh------cCCCEEEEeCCCCCCCCCCCHHHHHHHHHh--CCc-EEEE
Confidence 753 55778899999999988888999998765 256999999999999999999999999999 887 5569
Q ss_pred eeeccCce--eeccccccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCc
Q 017726 176 GVSSICAI--DFRMDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPS 252 (367)
Q Consensus 176 ~~~~~~~~--~~~~~~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (367)
++|+.... .......+.++++.|+||+++ .+.++|+++.++++++++.... ..++++
T Consensus 171 ea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l~~~~--------------------~~~~~~ 230 (337)
T 3p1t_A 171 ETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQ--------------------WFCNVG 230 (337)
T ss_dssp CTTGGGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHHHHHTTS--------------------CTTCSC
T ss_pred CCChhhccccccccccCCCEEEEeeCchhccCcchheEEEEeCHHHHHHHHhhc--------------------CCCCCC
Confidence 99873221 112222357899999999994 2344699999999988876431 133466
Q ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCe
Q 017726 253 IQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNL 332 (367)
Q Consensus 253 ~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv 332 (367)
...+.++..+++... .+++.+++..++++++.+.|+++|+.+..+ .+ .++++..+ +..++.+.|. ++||
T Consensus 231 ~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~-~~~~~~~~---~~~~~~~~l~-~~gi 299 (337)
T 3p1t_A 231 TLDLHALEAALDNDR--AREAHIAKTLAQRRRVADALRGLGYRVASS----EA-NFVLVENA---AGERTLRFLR-ERGI 299 (337)
T ss_dssp HHHHHHHHHHHTCHH--HHHHHHHHHHHHHHHHHHHHHHTTCCBCCC----SS-SEEEEECT---TTHHHHHHHH-HTTE
T ss_pred HHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHHCcCEECCC----CC-eEEEEEcC---CHHHHHHHHH-HCCe
Confidence 655555555554321 255667777888999999999988877665 23 46667664 3467777775 5599
Q ss_pred EEccCCCCCCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 333 SLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 333 ~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
.+.+|..+..++++||++. ..++.+.+.++|++
T Consensus 300 ~v~~g~~~~~~~~iRis~~-~~~~~~~l~~al~~ 332 (337)
T 3p1t_A 300 QVKDAGQFGLHHHIRISIG-REEDNDRLLAALAE 332 (337)
T ss_dssp ECEEGGGGTCCSEEEEECC-CHHHHHHHHHHHHH
T ss_pred EEEECccCCCCCeEEEecC-CHHHHHHHHHHHHH
Confidence 9999876655689999965 44555666666653
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-32 Score=247.29 Aligned_cols=308 Identities=17% Similarity=0.142 Sum_probs=227.1
Q ss_pred HHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHH
Q 017726 22 DQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWID 101 (367)
Q Consensus 22 ~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~ 101 (367)
+++++++.+.... |.......++++.++++++.-.++++++++||++|+..++.+++.+||+|++..+.|++.. .
T Consensus 46 ~~~~~~~~~~~~~---y~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~--~ 120 (375)
T 3op7_A 46 EDFYKKLQGTKLN---YGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLY--D 120 (375)
T ss_dssp HHHHHHHHTSCCS---SCCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHH--H
T ss_pred HHHHHHHhcCCcC---CCCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHH--H
Confidence 4556665553322 2222345689999999985323345999999999999999999999999999999888754 4
Q ss_pred HHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCCCcEEEEee
Q 017726 102 QQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDG 176 (367)
Q Consensus 102 ~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~ 176 (367)
.++..|.+++.++.+. ++.+|+++++++++ +++++|++++|+||||.++| +++|.++|++ +|+++|+|+
T Consensus 121 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~--~~~~li~De 194 (375)
T 3op7_A 121 IPKSLGAEVDLWQIEEENGWLPDLEKLRQLIR----PTTKMICINNANNPTGAVMDRTYLEELVEIASE--VGAYILSDE 194 (375)
T ss_dssp HHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC----TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHT--TTCEEEEEC
T ss_pred HHHHcCCEEEEEeccccCCCCCCHHHHHHhhc----cCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHH--cCCEEEEEc
Confidence 5778899999998864 34579999999997 46799999999999999999 8999999999 999999999
Q ss_pred eeccCcee---eccccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCC
Q 017726 177 VSSICAID---FRMDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTP 251 (367)
Q Consensus 177 ~~~~~~~~---~~~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (367)
+|+.+... .-....+.++++.|++|+++ .+| +|++++++++++++..... .+.+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~v~~~~~l~~~~~~~~~------------------~~~~~~ 255 (375)
T 3op7_A 195 VYRSFSELDVPSIIEVYDKGIAVNSLSKTYS-LPGIRIGWVAANHQVTDILRDYRD------------------YTMICA 255 (375)
T ss_dssp CSCCCSSSCCCCHHHHCTTEEEEEESSSSSS-CGGGCCEEEECCHHHHHHHTTTGG------------------GTTSCC
T ss_pred ccccccccCCCchhhhcCCEEEEeEChhhcC-CcccceEEEEeCHHHHHHHHHHHh------------------hhccCC
Confidence 98764432 11122356799999999995 334 6999999999888764311 012234
Q ss_pred cHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhC
Q 017726 252 SIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRY 330 (367)
Q Consensus 252 ~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 330 (367)
+.....+...+++...+. +++.++++.++++.+.+.|++. ++.+..+ ..+.+.++.++.+.+..++++.|.+++
T Consensus 256 ~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ll~~~ 330 (375)
T 3op7_A 256 GVFDDLVAQLALAHYQEI-LERNRHILEENLAILDQWIEEEPLVSYIRP----AVVSTSFVKIAVDMPMEDFCLQLLQEH 330 (375)
T ss_dssp CHHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHHHHHHHHHCTTEEECCC----SSSSCEEEEECCSSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHHHHHhhCCCceEecC----CCeEEEeEEcCCCCCHHHHHHHHHHhC
Confidence 555555555566543333 6777888899999999999997 7776665 344456677766678889999987666
Q ss_pred CeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhh
Q 017726 331 NLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 331 gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
||.+.+|..+..++++|+++....++.+...+.|
T Consensus 331 gi~v~~g~~~~~~~~iRi~~~~~~~~i~~~l~~l 364 (375)
T 3op7_A 331 GVLLVPGNRFERDGYVRLGFACEQETLIKGLEKL 364 (375)
T ss_dssp CEECEEGGGGTCTTEEEECCCSCHHHHHHHHHHH
T ss_pred CEEEeChhhhCCCCeEEEEecCCHHHHHHHHHHH
Confidence 9999988665557889999765543344333333
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-33 Score=255.76 Aligned_cols=315 Identities=12% Similarity=0.070 Sum_probs=225.1
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cCC-CCc-eEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGT-PFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~~-~~~-~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
+.++.+.+++.+.... ...|.......++++.+++++ |.+ +++ ++++++|+++|+..++.+++.+||+|+++.
T Consensus 38 ~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~ 117 (411)
T 2o0r_A 38 DGPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIE 117 (411)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEeC
Confidence 3567788877764322 112221122345666666665 754 333 699999999999999999899999999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCCC---CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccH---HHHHHHHHh
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDWG---EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL---SKVRKLLDE 165 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~---~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~---~~i~~~~~~ 165 (367)
+.|++.. ..++..|.+++.++.+.+ +.+|+++++++++ +++++|++++|+||||.++|. ++|.++|++
T Consensus 118 ~~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~----~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~ 191 (411)
T 2o0r_A 118 PFYDSYS--PVVAMAGAHRVTVPLVPDGRGFALDADALRRAVT----PRTRALIINSPHNPTGAVLSATELAAIAEIAVA 191 (411)
T ss_dssp SCCTTHH--HHHHHTTCEEEEEECEEETTEEECCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CCcHhHH--HHHHHcCCEEEEeeccccccCCCCCHHHHHHhhc----cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 9988853 456778999999998653 5689999999997 467999999999999999874 889999999
Q ss_pred cCCCcEEEEeeeeccCcee----eccc----cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechH
Q 017726 166 YRHPALFLVDGVSSICAID----FRMD----EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~----~~~~----~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (367)
+|+++|+|++|+.+... .++. ..+.|+++.|++|+++ ++| +|++++++++++.+....
T Consensus 192 --~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~--------- 259 (411)
T 2o0r_A 192 --ANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFN-CTGWKIGWACGPAELIAGVRAAK--------- 259 (411)
T ss_dssp --TTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTT-CTTTCEEEEECCHHHHHHHHHHH---------
T ss_pred --cCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcC-CccceEEEEeeCHHHHHHHHHHH---------
Confidence 99999999999865421 1221 1467999999999884 566 799999999887765321
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS 315 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 315 (367)
... .++.+.....++.++++.. +..++++++++.++++++.+.|++.|+++..+ ..+.+++++++.
T Consensus 260 ----~~~-----~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~g~~~~~~~~~ 325 (411)
T 2o0r_A 260 ----QYL-----SYVGGAPFQPAVALALDTE-DAWVAALRNSLRARRDRLAAGLTEIGFAVHDS----YGTYFLCADPRP 325 (411)
T ss_dssp ----HHH-----TSCCCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHTCEECCC----CBSSEEEEECGG
T ss_pred ----hhc-----cCCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHcCCEecCC----CeeEEEEEecCC
Confidence 000 1223333445555566543 23377888999999999999999888887665 345578888854
Q ss_pred --CCCHHHHHHHHHhhCCeEEccCCCC--C-----------CCcEEEEeecCCCCHHHHHHhhhh
Q 017726 316 --HINSSEIVRRAWQRYNLSLGLGLNK--V-----------AGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 316 --~~~~~~l~~~L~~~~gv~v~~g~~~--~-----------~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
+.+..++.++|.+++||.+.+|..+ . ..+++||++....++.+...+.|.
T Consensus 326 ~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~~~~l~ 390 (411)
T 2o0r_A 326 LGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEAIRRLS 390 (411)
T ss_dssp GTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCSCHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecCCHHHHHHHHHHHH
Confidence 2567889998876669999987432 1 246799997543333344444443
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=253.07 Aligned_cols=318 Identities=13% Similarity=0.104 Sum_probs=230.9
Q ss_pred CCCCChHHHHHHHccCCCC-----C-CCCcHHHHHHHHHHHHHHHhcCC--CCceEEecCChhHHHHHHHHccCCCCCeE
Q 017726 16 GPVHIPDQVIRAMNRNNED-----Y-RSPAVPALTKTLLEDIKKIFKTT--SGTPFLIPTTGTGAWESALTNTLSPGDRI 87 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~-----~-~~~~~~~~~~~~~~~la~~~~~~--~~~~v~~~~ggt~al~~~~~~~~~~gd~v 87 (367)
.|.+.++.+++++.+.... + ......+..+++++.+++++|.+ +++++++++|+++++..++.+++.+||+|
T Consensus 50 ~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~v 129 (407)
T 3nra_A 50 DAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKV 129 (407)
T ss_dssp TTSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTCCTTCEE
T ss_pred CCCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEE
Confidence 3456778888887775321 1 12234567788888888888875 22469999999999999999999999999
Q ss_pred EEEeCCcchHHHHHHHHHhCCceEEEeC------CCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHH
Q 017726 88 ISFLIGQFSLLWIDQQQRLNFNVDVVES------DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSK 158 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~------~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~ 158 (367)
++..+.|++.. ..++..|.+++.++. +.++.+|++++++++++ ++++|++++|+||||.++| +++
T Consensus 130 l~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~----~~~~v~~~~p~nptG~~~~~~~l~~ 203 (407)
T 3nra_A 130 AIVQPDYFANR--KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA----GARVFLFSNPNNPAGVVYSAEEIGQ 203 (407)
T ss_dssp EEEESCCTHHH--HHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT----TCCEEEEESSCTTTCCCCCHHHHHH
T ss_pred EEcCCcccchH--HHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh----CCcEEEEcCCCCCCCcccCHHHHHH
Confidence 99999888743 567889999999998 35678899999999984 6799999999999999998 888
Q ss_pred HHHHHHhcCCCcEEEEeeeeccCcee----ecc-----ccccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCC
Q 017726 159 VRKLLDEYRHPALFLVDGVSSICAID----FRM-----DEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSV 228 (367)
Q Consensus 159 i~~~~~~~~~~~~vi~D~~~~~~~~~----~~~-----~~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~ 228 (367)
|.++|++ +|+++|+|++|+.+... ..+ ...+.++++.|+||+++ ++.++|++++++++++.+....
T Consensus 204 i~~~~~~--~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~-- 279 (407)
T 3nra_A 204 IAALAAR--YGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQ-- 279 (407)
T ss_dssp HHHHHHH--HTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHHH--
T ss_pred HHHHHHH--cCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHHH--
Confidence 9999999 99999999999864321 111 12456799999999985 2234799999999888776321
Q ss_pred ceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCc
Q 017726 229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDT 307 (367)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~ 307 (367)
.. +..+++.....++..++... +..+++.+++.+++++++.+.|+++ ++.+..+ ..+.
T Consensus 280 -----------~~-----~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~----~~~~ 338 (407)
T 3nra_A 280 -----------AI-----VSLRAAGYSQAVLRGWFDEA-PGWMEDRIARHQAIRDELLHVLRGCEGVFARTP----QAGS 338 (407)
T ss_dssp -----------HH-----HTSSSCHHHHGGGGGTTCCC-TTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCC----SBSS
T ss_pred -----------hh-----hccCCChHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHhcCCCceeccC----CeeE
Confidence 00 01123443323333233210 1226778888999999999999998 8887665 3445
Q ss_pred eEEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 308 VTAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 308 ~~~~~~~~-~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
++++.++. +.+..++.+.|.+++||.+.+|..+ ....++||++....++.+...+.|
T Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~~~~l 398 (407)
T 3nra_A 339 YLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRI 398 (407)
T ss_dssp EECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCSCHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 66777765 5678899999977779999987543 346789999875333333333333
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=254.23 Aligned_cols=315 Identities=12% Similarity=0.062 Sum_probs=226.9
Q ss_pred CChHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHh----cCC-CCc-eEEecCChhHHHHHHHHccCCCCCeEE
Q 017726 19 HIPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIF----KTT-SGT-PFLIPTTGTGAWESALTNTLSPGDRII 88 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~----~~~-~~~-~v~~~~ggt~al~~~~~~~~~~gd~vl 88 (367)
+.++.+.+++.+.... ...|.......++++.+++++ |.+ .++ ++++++|+++|+..++.+++.+||+|+
T Consensus 50 ~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl 129 (429)
T 1yiz_A 50 HAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVI 129 (429)
T ss_dssp CCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEE
T ss_pred CCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhcCCCCEEE
Confidence 4577888888765432 112221122345666666664 753 334 699999999999999999899999999
Q ss_pred EEeCCcchHHHHHHHHHhCCceEEEeCCCC----------CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---
Q 017726 89 SFLIGQFSLLWIDQQQRLNFNVDVVESDWG----------EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN--- 155 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~----------~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~--- 155 (367)
+..|.|++.. ..++..|.+++.++.+.+ +.+|+++++++++ +++++|++++|+||||.++|
T Consensus 130 ~~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~v~~~~p~nptG~~~~~~~ 203 (429)
T 1yiz_A 130 IIEPFFDCYE--PMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFN----EKTKMIIINTPHNPLGKVMDRAE 203 (429)
T ss_dssp EEESCCTTHH--HHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHH
T ss_pred EcCCCchhHH--HHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhc----cCceEEEECCCCCCCCccCCHHH
Confidence 9999888754 456778999999998753 4689999999987 47799999999999999985
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeeccCce------ee-ccc-cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccC
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSSICAI------DF-RMD-EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTA 225 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~~~~~------~~-~~~-~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~ 225 (367)
+++|.++|++ +|+++|+|++|+.+.. ++ ... ..+.|+++.|+||+++ ++| +|++++++++++.+...
T Consensus 204 l~~i~~~~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~ 280 (429)
T 1yiz_A 204 LEVVANLCKK--WNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFS-LTGWKIGWAYGPEALLKNLQMV 280 (429)
T ss_dssp HHHHHHHHHH--HTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHT-CGGGCCEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccC-CCCcceEEEEeCHHHHHHHHHH
Confidence 8889999999 9999999999875322 12 121 3468999999999984 556 79999999988877532
Q ss_pred CCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHH-----HH-HhChHHHHHHHHHHHHHHHHHHHHcCCccccC
Q 017726 226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL-----IF-EEGLENVIERHRRLGKATRLAVEAWGLKNCTQ 299 (367)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~-----~~-~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 299 (367)
. . . ..++.+...+.++.++++. .. +..+++++++++++++++.+.|+++|+.+..+
T Consensus 281 ~---------------~-~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 342 (429)
T 1yiz_A 281 H---------------Q-N--CVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVP 342 (429)
T ss_dssp H---------------H-T--TTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHTCEEEEC
T ss_pred H---------------h-h--cccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence 1 0 1 1334566555566666655 21 12278888999999999999999988877665
Q ss_pred CCccCCCceEEEEcCCC------------CCHHHHHHHHHhhCCeEEccCCCCC-------CCcEEEEeecCCCCHHHHH
Q 017726 300 KEEWFSDTVTAVIVPSH------------INSSEIVRRAWQRYNLSLGLGLNKV-------AGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 300 ~~~~~~~~~~~~~~~~~------------~~~~~l~~~L~~~~gv~v~~g~~~~-------~~~~iRi~~~~~~~~~~~~ 360 (367)
..+.+++++++.. .+..++.++|.+++||.+.+|..+. .++++||++....++.+..
T Consensus 343 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~~ 418 (429)
T 1yiz_A 343 ----QGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKA 418 (429)
T ss_dssp ----SBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCSCHHHHHHH
T ss_pred ----CcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecCCHHHHHHH
Confidence 3456788888643 3466888988766799999874322 2568999986433333333
Q ss_pred Hhhh
Q 017726 361 FQLL 364 (367)
Q Consensus 361 ~~~l 364 (367)
.+.|
T Consensus 419 l~~l 422 (429)
T 1yiz_A 419 AEIL 422 (429)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=252.39 Aligned_cols=301 Identities=13% Similarity=0.110 Sum_probs=216.6
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
+.++.+.+++.+.... ...|.......++++.+++++ |.+ .++++++++|+++|+..++.+++.+||+|+++.+
T Consensus 43 ~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~ 122 (388)
T 1j32_A 43 NTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAP 122 (388)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESS
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 4567788777664321 112221122345555565555 543 3356999999999999999998999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcC
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR 167 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~ 167 (367)
+|++.. ..++..|.+++.++.+. ++.+|+++++++++ +++++|++++|+||||.++| +++|.++|++
T Consensus 123 ~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~-- 194 (388)
T 1j32_A 123 FWVSYP--EMVKLAEGTPVILPTTVETQFKVSPEQIRQAIT----PKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVE-- 194 (388)
T ss_dssp CCTHHH--HHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--
T ss_pred CChhHH--HHHHHcCCEEEEecCCcccCCCCCHHHHHHhcC----cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHH--
Confidence 888753 45677899999999875 46789999999997 46799999999999999975 8889999999
Q ss_pred CCcEEEEeeeeccCcee----ec---cc--cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHH
Q 017726 168 HPALFLVDGVSSICAID----FR---MD--EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~----~~---~~--~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (367)
+|+++|+|++|+.+... .+ +. ..+.|+++.|+||++ |++| +|++++++++++++....
T Consensus 195 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~-~~~G~r~G~~~~~~~~~~~l~~~~---------- 263 (388)
T 1j32_A 195 AGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTY-AMTGWRVGFLAGPVPLVKAATKIQ---------- 263 (388)
T ss_dssp HTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTT-TCTTTCCEEEECCHHHHHHHHHHH----------
T ss_pred cCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhcc-CCcccceEEEEeCHHHHHHHHHHH----------
Confidence 99999999998764321 11 11 135799999999999 4566 799999999887775321
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCC
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS 315 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~ 315 (367)
..+ .++.+.....+..++++.. +..++++++++.++++++.+.|+++ |+.+..+ .++.++++.++.
T Consensus 264 -----~~~---~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~----~~~~~~~~~~~~ 330 (388)
T 1j32_A 264 -----GHS---TSNVCTFAQYGAIAAYENS-QDCVQEMLAAFAERRRYMLDALNAMPGLECPKP----DGAFYMFPSIAK 330 (388)
T ss_dssp -----HTT---TCSCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCC----CBTTEECCBCGG
T ss_pred -----hhc---ccCCCHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCC----CeeEEEEEecCC
Confidence 111 1234443333333344321 1226778889999999999999998 8887665 344455566643
Q ss_pred -CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeec
Q 017726 316 -HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHL 351 (367)
Q Consensus 316 -~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~ 351 (367)
+.+..++.+.|.+++||.+.+|..+..++++|+++.
T Consensus 331 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~ 367 (388)
T 1j32_A 331 TGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA 367 (388)
T ss_dssp GTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC
T ss_pred CCCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec
Confidence 457889999998656999998865444678999975
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-32 Score=249.49 Aligned_cols=312 Identities=13% Similarity=0.064 Sum_probs=222.1
Q ss_pred CCChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhc----CC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 18 VHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFK----TT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~----~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
.++++.+.+++.+.... ...|.......++|+.++++++ .+ .++++++|+|+++|+..++.+++.+||+|++..
T Consensus 43 ~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~ 122 (391)
T 3h14_A 43 TGAPRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGA 122 (391)
T ss_dssp SCSCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhcCCCCEEEEcC
Confidence 35578888888875443 2233322335677777777764 22 334699999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhc
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEY 166 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~ 166 (367)
|.|++.. ..++..|.+++.++.+.+ +.+|+++++++ ++++|++++|+||||.++| +++|.++|++
T Consensus 123 p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~-------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~- 192 (391)
T 3h14_A 123 PGYPSYR--QILRALGLVPVDLPTAPENRLQPVPADFAGL-------DLAGLMVASPANPTGTMLDHAAMGALIEAAQA- 192 (391)
T ss_dssp SCCHHHH--HHHHHTTCEEEEEECCGGGTTSCCHHHHTTS-------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHH-
T ss_pred CCCccHH--HHHHHcCCEEEEeecCcccCCCCCHHHHHhc-------CCeEEEECCCCCCCCccCCHHHHHHHHHHHHH-
Confidence 9887754 557788999999998764 36799888765 3589999999999999997 7788899999
Q ss_pred CCCcEEEEeeeeccCce---eecccc-ccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHh
Q 017726 167 RHPALFLVDGVSSICAI---DFRMDE-WGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFY 241 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~---~~~~~~-~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (367)
+|+++|+|++|+.+.. +.+... .+.++++.|++|+++ ++.++|++++++++++.+....
T Consensus 193 -~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~--------------- 256 (391)
T 3h14_A 193 -QGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWMVVPEDQVRVVERIA--------------- 256 (391)
T ss_dssp -TTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEEECCGGGHHHHHHHH---------------
T ss_pred -cCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCccceeEEEEeCHHHHHHHHHHH---------------
Confidence 9999999999985432 122211 246799999999994 3344799999999887765321
Q ss_pred hcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccc-cCCCccCCCceEEEEcCC-CCCH
Q 017726 242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNC-TQKEEWFSDTVTAVIVPS-HINS 319 (367)
Q Consensus 242 ~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~-~~~~ 319 (367)
.. +.++++.....++.+++. ....+++.++++.++++++.+.|++.++... .+ ..+.++++.++. +.+.
T Consensus 257 ~~---~~~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 327 (391)
T 3h14_A 257 QN---MFICAPHASQVAALAALD--CDAELQANLDVYKANRKLMLERLPKAGFTRIAPP----DGAFYVYADVSDLTDDS 327 (391)
T ss_dssp HH---TTCCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCC----CBTTEEEEECTTTCSCH
T ss_pred hh---hccCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC----CeeEEEEEecCccCCCH
Confidence 00 123466655555555555 2333788899999999999999999865543 33 344567777765 5678
Q ss_pred HHHHHHHHhhCCeEEccCCCCCC---CcEEEEeecCCCCHHHHHHhhh
Q 017726 320 SEIVRRAWQRYNLSLGLGLNKVA---GKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 320 ~~l~~~L~~~~gv~v~~g~~~~~---~~~iRi~~~~~~~~~~~~~~~l 364 (367)
.++++.|.+++||.+.+|..+.. ++++||++....++.+...+.|
T Consensus 328 ~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~~~~~i~~~l~~l 375 (391)
T 3h14_A 328 RAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRL 375 (391)
T ss_dssp HHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecCCHHHHHHHHHHH
Confidence 89999988777999998855433 5689999776333333333333
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-33 Score=256.35 Aligned_cols=301 Identities=13% Similarity=0.056 Sum_probs=225.1
Q ss_pred CCChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhc-----CCCCceEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 18 VHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFK-----TTSGTPFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~-----~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
.++++.+.+++.+.... ...|.......++|+.++++++ ++. +++++|+||++|+..++.+++.+||+|+++
T Consensus 70 ~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~-~~v~~t~g~t~al~~~~~~l~~~gd~vl~~ 148 (427)
T 3dyd_A 70 LPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCPEAPLEA-KDVILTSGCSQAIDLCLAVLANPGQNILVP 148 (427)
T ss_dssp SCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCBTTBCCCG-GGEEEESSHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHHHHHhhcCCCCCh-HHEEEecCcHHHHHHHHHHhcCCCCEEEEc
Confidence 47889999998875432 1233333456799999999998 444 459999999999999999999999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHh
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE 165 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~ 165 (367)
.|.|+++. ..++..|.+++.++.++ ++.+|+++++++++ +++++|++++|+||||.++| +++|.++|++
T Consensus 149 ~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~ 222 (427)
T 3dyd_A 149 RPGFSLYK--TLAESMGIEVKLYNLLPEKSWEIDLKQLEYLID----EKTACLIVNNPSNPCGSVFSKRHLQKILAVAAR 222 (427)
T ss_dssp ESCCTHHH--HHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CCCchhHH--HHHHHcCCEEEEEecccccCCCCCHHHHHHHhc----cCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99887643 56788899999998763 45789999999987 46799999999999999999 8999999999
Q ss_pred cCCCcEEEEeeeeccCce----eecccccc---ceEEEecCCCcccCCCc--ceeeeeC-------HHHHHHhccCCCCc
Q 017726 166 YRHPALFLVDGVSSICAI----DFRMDEWG---IDVALTGSQKALSLPTG--MGIVCAS-------PKALEASKTAKSVR 229 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~----~~~~~~~~---~d~~~~s~~K~~~g~~g--~g~~~~~-------~~~~~~~~~~~~~~ 229 (367)
+|+++|+|++|+.+.. ..+....+ ..+++.|+||.++ .+| +|+++++ +++.+.+...
T Consensus 223 --~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~-~~G~riG~~~~~~~~~~~~~~i~~~l~~~---- 295 (427)
T 3dyd_A 223 --QCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWL-VPGWRLGWILIHDRRDIFGNEIRDGLVKL---- 295 (427)
T ss_dssp --TTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSS-CGGGCCEEEEEECSTTSSHHHHHHHHHHH----
T ss_pred --CCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCC-CcCcceEEEEecCcchhhHHHHHHHHHHH----
Confidence 9999999999986432 11222222 2377889999874 444 6999887 3555444321
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCce
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTV 308 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~ 308 (367)
... .++++.....++.++++......++++++++.++++++.+.|+++ |+.+..+ ..+.+
T Consensus 296 ------------~~~---~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p----~~g~~ 356 (427)
T 3dyd_A 296 ------------SQR---ILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRP----SGAMY 356 (427)
T ss_dssp ------------HHH---HCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECC----SBTTE
T ss_pred ------------Hhc---cCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCC----CeeEE
Confidence 000 224666666666666664333447788899999999999999998 8877665 34556
Q ss_pred EEEEcC-----CCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeec
Q 017726 309 TAVIVP-----SHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHL 351 (367)
Q Consensus 309 ~~~~~~-----~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~ 351 (367)
+++.++ ++.+..+++++|.+++||.+.+|..+..++++||++.
T Consensus 357 ~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~ 404 (427)
T 3dyd_A 357 LMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVIT 404 (427)
T ss_dssp EEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEESC
T ss_pred EEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEEC
Confidence 677764 2356788999997667999999866656789999975
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=253.67 Aligned_cols=333 Identities=11% Similarity=-0.037 Sum_probs=230.0
Q ss_pred CCChHHHHHHHccCCC-CC-CCCcHHHHHHHHHHHHHHHhc------CCCCceEEecCChhHHHHHHHHccC--CCCC--
Q 017726 18 VHIPDQVIRAMNRNNE-DY-RSPAVPALTKTLLEDIKKIFK------TTSGTPFLIPTTGTGAWESALTNTL--SPGD-- 85 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~-~~-~~~~~~~~~~~~~~~la~~~~------~~~~~~v~~~~ggt~al~~~~~~~~--~~gd-- 85 (367)
.+.++.+.+++.+... .. ..|.......++|+.++++++ +++ +++++|+|+++++..++.+++ .+||
T Consensus 56 ~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~-~~i~~t~g~t~al~~~~~~l~~~~~gd~~ 134 (437)
T 3g0t_A 56 LPAPQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPA-RACVPTVGSMQGCFVSFLVANRTHKNREY 134 (437)
T ss_dssp SCCCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCG-GGEEEESHHHHHHHHHHHHHTTSCTTCSC
T ss_pred CCCCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCc-ccEEEeCCHHHHHHHHHHHHhcCCCCCcc
Confidence 4567888888876533 11 222222233577777777776 333 459999999999999999988 9999
Q ss_pred eEEEEeCCcchHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHH
Q 017726 86 RIISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRK 161 (367)
Q Consensus 86 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~ 161 (367)
+|+++.+.|++.. ..++..|.+++.++.+. ++.+|++++++++.+ +++++|++++|+||||.++| +++|.+
T Consensus 135 ~Vl~~~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~ 209 (437)
T 3g0t_A 135 GTLFIDPGFNLNK--LQCRILGQKFESFDLFEYRGEKLREKLESYLQT---GQFCSIIYSNPNNPTWQCMTDEELRIIGE 209 (437)
T ss_dssp CEEEEESCCHHHH--HHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTT---TCCCEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred EEEEeCCCcHhHH--HHHHHcCCEEEEEeecCCCCccCHHHHHHHHhc---CCceEEEEeCCCCCCCCcCCHHHHHHHHH
Confidence 9999999887743 55678899999999863 446899999999942 47799999999999999997 667889
Q ss_pred HHHhcCCCcEEEEeeeeccCce----e--------ecccc-ccceEEEecCCCccc-CCCcceeeeeCHHHHH-HhccCC
Q 017726 162 LLDEYRHPALFLVDGVSSICAI----D--------FRMDE-WGIDVALTGSQKALS-LPTGMGIVCASPKALE-ASKTAK 226 (367)
Q Consensus 162 ~~~~~~~~~~vi~D~~~~~~~~----~--------~~~~~-~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~-~~~~~~ 226 (367)
+|++ +|+++|+|++|+.+.. + ..+.. .+.++++.|+||+++ .+.++|++++++++++ ++....
T Consensus 210 ~a~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 287 (437)
T 3g0t_A 210 LATK--HDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLE 287 (437)
T ss_dssp HHHH--TTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGH
T ss_pred HHHH--CCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEEEECHHHhhhhhhccc
Confidence 9999 9999999999975322 1 12222 467799999999985 2234799999999887 521100
Q ss_pred CCceeechH-HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHcCCccc------
Q 017726 227 SVRVFFDWK-DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG--LENVIERHRRLGKATRLAVEAWGLKNC------ 297 (367)
Q Consensus 227 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g--~~~~~~~~~~~~~~l~~~L~~~g~~~~------ 297 (367)
.......+. ......... ..++++.....++..+++...... ++++++++.++++++.+.|+++|+.+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 365 (437)
T 3g0t_A 288 ESFGRLRFGEALSSSALYA--LSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGN 365 (437)
T ss_dssp HHHSCSBHHHHHHTTHHHH--HHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTTEEESSCEETT
T ss_pred ccccccchhHHHHHHHHhh--hcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEeccccCC
Confidence 000000000 000001101 133566666666666666644321 788899999999999999999888777
Q ss_pred cCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCC--CcEEEEeecC-CCCHHHHHHhhhh
Q 017726 298 TQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVA--GKVFRIGHLG-HLNEVMFNFQLLF 365 (367)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~--~~~iRi~~~~-~~~~~~~~~~~l~ 365 (367)
.+. ..+.++++.++ +.+..++.+.|.++ ||.+.++..+.. ++++||++.. ..++.+...+.|.
T Consensus 366 ~~~---~~~~~~~~~~~-~~~~~~l~~~L~~~-gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~ 431 (437)
T 3g0t_A 366 EPL---ADGFYFTVGYK-GMDSSKLIEKFVRY-GMCAITLKTTGSKRNEAMRICTSLLPESQFPDLEKRLQ 431 (437)
T ss_dssp EEC---CSSSEEEEEET-TCCHHHHHHHHHHT-TEECEESTTTTCCCTTCEEEECSSSCGGGHHHHHHHHH
T ss_pred CCC---ceeEEEEEecC-CCCHHHHHHHHHHc-CeEEeeccccCCCCCCEEEEEEecCCHHHHHHHHHHHH
Confidence 120 24557888886 77889999999865 999998865432 2679999764 3334444444443
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=245.21 Aligned_cols=315 Identities=10% Similarity=-0.006 Sum_probs=230.0
Q ss_pred CChHHHHHHHccCCCC---CCCCcHHHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCc
Q 017726 19 HIPDQVIRAMNRNNED---YRSPAVPALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQ 94 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~ 94 (367)
+.++.+.+++.+.... .......+..+++++.+++.+|.+ .++++++++|+++++..++.+++.+||+|++..+.|
T Consensus 45 ~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~ 124 (391)
T 4dq6_A 45 KAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVY 124 (391)
T ss_dssp CCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCC
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCC
Confidence 5578888888775432 122234677888889999999843 234599999999999999999999999999999988
Q ss_pred chHHHHHHHHHhCCceEEEeCC--C--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc---cHHHHHHHHHhcC
Q 017726 95 FSLLWIDQQQRLNFNVDVVESD--W--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN---NLSKVRKLLDEYR 167 (367)
Q Consensus 95 ~~~~~~~~~~~~g~~~~~v~~~--~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~---~~~~i~~~~~~~~ 167 (367)
++.. ..++..|.+++.++.+ . ++.+|+++++++++ + +++|++++|+||||.++ ++++|.++|++
T Consensus 125 ~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~----~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~-- 195 (391)
T 4dq6_A 125 SPFN--SVVKNNNRELIISPLQKLENGNYIMDYEDIENKIK----D-VKLFILCNPHNPVGRVWTKDELKKLGDICLK-- 195 (391)
T ss_dssp THHH--HHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCT----T-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHH--
T ss_pred HHHH--HHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhh----c-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHH--
Confidence 8753 4567889999999887 2 23589999999997 3 69999999999999995 47788888999
Q ss_pred CCcEEEEeeeeccCce----eeccccc-----cceEEEecCCCccc-CCCcceeeeeCH-HHHHHhccCCCCceeechHH
Q 017726 168 HPALFLVDGVSSICAI----DFRMDEW-----GIDVALTGSQKALS-LPTGMGIVCASP-KALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~----~~~~~~~-----~~d~~~~s~~K~~~-g~~g~g~~~~~~-~~~~~~~~~~~~~~~~~~~~ 236 (367)
+|+++|+|++|+.+.. ..+.... +..+++.|+||+++ ++.++|++++++ ++++.+....
T Consensus 196 ~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~---------- 265 (391)
T 4dq6_A 196 HNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAF---------- 265 (391)
T ss_dssp TTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHH----------
T ss_pred cCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHH----------
Confidence 9999999999986432 1222222 34589999999994 223469998875 7776665321
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-c-CCccccCCCccCCCceEEEEcC
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~ 314 (367)
...+ .++++...+.++.+++....+. ++++++++.++++++.+.|++ + |+.+..+ ..+.++++.++
T Consensus 266 -----~~~~--~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~~~~~~~~~~ 333 (391)
T 4dq6_A 266 -----TRID--IKRNNCFSLVATEASYNNGESW-LESFLEYLESNIDFAIKYINENMPKLKVRKP----EGTYLLWVDFS 333 (391)
T ss_dssp -----HHTT--CCCCCHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHCTTSEECCC----SBSSEEEEECG
T ss_pred -----Hhhc--CCCCCHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHhhCCCCEecCC----CccEEEEEEhh
Confidence 1111 3356766666666666653222 778889999999999999998 4 8888776 45556678886
Q ss_pred C-CCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 315 S-HINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 315 ~-~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
. +.+..++.+.|.+++||.+.+|..+ ..++++||++....++.+...+.|
T Consensus 334 ~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l 386 (391)
T 4dq6_A 334 ALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLACPRSMLEEALIRI 386 (391)
T ss_dssp GGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECCSCHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcCCHHHHHHHHHHH
Confidence 5 5788999999987779999987443 345789999764333333333333
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=244.75 Aligned_cols=306 Identities=12% Similarity=0.078 Sum_probs=225.0
Q ss_pred CCChHHHHHHHccCCCC---CCCCcHHHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeCC
Q 017726 18 VHIPDQVIRAMNRNNED---YRSPAVPALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIG 93 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~ 93 (367)
.+.++.+.+++.+.... ...+...+..+++++.+++.+|.+ .++++++++|+++++..++.+++.+||+|++..+.
T Consensus 39 ~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~ 118 (391)
T 3dzz_A 39 FKIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEPV 118 (391)
T ss_dssp SCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSC
T ss_pred CCCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhCCCCCeEEECCCC
Confidence 35678888888775432 112224566677777777777743 23469999999999999999999999999999998
Q ss_pred cchHHHHHHHHHhCCceEEEeCCC---CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc---cHHHHHHHHHhcC
Q 017726 94 QFSLLWIDQQQRLNFNVDVVESDW---GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN---NLSKVRKLLDEYR 167 (367)
Q Consensus 94 ~~~~~~~~~~~~~g~~~~~v~~~~---~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~---~~~~i~~~~~~~~ 167 (367)
|++.. ..++..|.+++.++.+. ++.+|++++++++++ +++++|++++|+||||.++ ++++|.++|++
T Consensus 119 ~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~---~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~-- 191 (391)
T 3dzz_A 119 YNMFY--SVIEGNGRRVISSDLIYENSKYSVNWADLEEKLAT---PSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAK-- 191 (391)
T ss_dssp CHHHH--HHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTS---TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHH--
T ss_pred cHHHH--HHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhc---cCceEEEEECCCCCCCcccCHHHHHHHHHHHHH--
Confidence 87743 55778899999998852 234899999999974 4689999999999999995 57889999999
Q ss_pred CCcEEEEeeeeccCce----eecccccc---ce--EEEecCCCccc-CCCcceeeeeC-HHHHHHhccCCCCceeechHH
Q 017726 168 HPALFLVDGVSSICAI----DFRMDEWG---ID--VALTGSQKALS-LPTGMGIVCAS-PKALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~----~~~~~~~~---~d--~~~~s~~K~~~-g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~ 236 (367)
+|+++|+|++|+.+.. ..+..... .| +++.|+||+++ ++.++|+++++ +++++++....
T Consensus 192 ~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~---------- 261 (391)
T 3dzz_A 192 HQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESF---------- 261 (391)
T ss_dssp TTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHH----------
T ss_pred CCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHH----------
Confidence 9999999999985432 22222221 34 99999999984 23447999987 88877765320
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-c-CCccccCCCccCCCceEEEEcC
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~ 314 (367)
...+ .++++...+.++.+++....+ .+++++++..++++++.+.|++ + |+.+..+ ..+.++++.++
T Consensus 262 ----~~~~---~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~~~~~~~~~~ 329 (391)
T 3dzz_A 262 ----FLAG---IGEPNLLAIPAAIAAYEEGHD-WLRELKQVLRDNFAYAREFLAKEVPEVKVLDS----NASYLAWVDIS 329 (391)
T ss_dssp ----HHHT---CSSCCTTHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHCTTSEECCC----CBSSEEEEECG
T ss_pred ----Hhhc---cCCCCHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhCCCcEEecc----CceEEEEEehh
Confidence 0001 234555555566666655322 2778889999999999999999 4 8888776 35556678875
Q ss_pred C-CCCHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecC
Q 017726 315 S-HINSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLG 352 (367)
Q Consensus 315 ~-~~~~~~l~~~L~~~~gv~v~~g~~~~--~~~~iRi~~~~ 352 (367)
. +.+..++.++|.+++||.+.+|..+. ..+++||++..
T Consensus 330 ~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~ 370 (391)
T 3dzz_A 330 ALGMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLAC 370 (391)
T ss_dssp GGCSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCS
T ss_pred hcCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC
Confidence 4 46888999999755699999885432 34789999763
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=250.00 Aligned_cols=329 Identities=14% Similarity=0.112 Sum_probs=229.3
Q ss_pred CCCcccccCCCCCChHHHHHHHccCCCC-----CCCCc----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 017726 7 PGKNHLFVPGPVHIPDQVIRAMNRNNED-----YRSPA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL 77 (367)
Q Consensus 7 ~~~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~~----~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~ 77 (367)
....|++.+++.++++.+++++.+.... ...+. ..+...++++++++++|.+++ ++++++|+++++..++
T Consensus 17 ~~~~~Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~~g~t~a~~~~~ 95 (432)
T 3a9z_A 17 NRKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQ-DIIFTSGGTESNNLVI 95 (432)
T ss_dssp -CCEECBTTTCCCCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGG-GEEEESCHHHHHHHHH
T ss_pred CCcEEeeCCccCCCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcC-eEEEeCChHHHHHHHH
Confidence 3567888888889999999999875321 11221 335578999999999998654 5999999999999998
Q ss_pred HccC--------CCCCeEEEEeCCcc-------------hHH--HHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhcc
Q 017726 78 TNTL--------SPGDRIISFLIGQF-------------SLL--WIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAAD 133 (367)
Q Consensus 78 ~~~~--------~~gd~vl~~~~~~~-------------~~~--~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~ 133 (367)
.++. .+||+|++..|.|+ +.. +...++..|.+++.++.+. ++.+|+++++++++
T Consensus 96 ~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~-- 173 (432)
T 3a9z_A 96 HSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVR-- 173 (432)
T ss_dssp HHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCC--
T ss_pred HHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhcc--
Confidence 8765 48876666666543 322 3344566799999999875 67789999999987
Q ss_pred CCCCccEEEEEecCCCccccccHHHHHHHHHhcCCC----------cEEEEeeeeccCceeeccccccceEEEecCCCcc
Q 017726 134 TAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHP----------ALFLVDGVSSICAIDFRMDEWGIDVALTGSQKAL 203 (367)
Q Consensus 134 ~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~----------~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~ 203 (367)
+++++|++++++||||.+.|+++|.++|++ ++ +++|+|++|+.+..++++...+.|++++|+||++
T Consensus 174 --~~~~~v~~~~~~nptG~~~~~~~i~~l~~~--~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~~~d~~~~s~~K~~ 249 (432)
T 3a9z_A 174 --PTTCLVTIMLANNETGVIMPISEISRRIKA--LNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFY 249 (432)
T ss_dssp --TTEEEEECCSBCTTTCBBCCHHHHHHHHHH--HHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHHCCSEEEEEGGGTT
T ss_pred --CCceEEEEECcccCcccccCHHHHHHHHHh--cCcccccccCCceEEEEEchhhhCCcccChhhcCCCEEEEehhHhc
Confidence 467999999999999999999999999999 77 9999999999887666655557899999999987
Q ss_pred cCCCcceeeeeCHHH-HHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Q 017726 204 SLPTGMGIVCASPKA-LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLG 282 (367)
Q Consensus 204 ~g~~g~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~ 282 (367)
|+. +|+++++++. ..++.+....... ... +..++++...+.++.++++.+.+ +++++.+++.+++
T Consensus 250 -g~~-~G~~~~~~~~~~~~~~~~~~~~~~------~~~-----~~~~~~~~~~~~a~~aal~~~~~-~~~~~~~~~~~~~ 315 (432)
T 3a9z_A 250 -GPR-IGALYVRGVGKLTPLYPMLFGGGQ------ERN-----FRPGTENTPMIAGLGKAADLVSE-NCETYEAHMRDIR 315 (432)
T ss_dssp -CCS-CEEEEETTBTTTBCCCCSCCSSCG------GGG-----TSCSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred -CCc-ceEEEEccccccCCcCceeecCCc------ccc-----ccCCCcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 566 8999998765 2222221110000 011 22456888888888888887765 5888999999999
Q ss_pred HHHHHHHHHc-CCccc--cCC-CccCCCceEEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCCC----------------
Q 017726 283 KATRLAVEAW-GLKNC--TQK-EEWFSDTVTAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNKV---------------- 341 (367)
Q Consensus 283 ~~l~~~L~~~-g~~~~--~~~-~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~~gv~v~~g~~~~---------------- 341 (367)
+++.+.|+++ |+.+. .+. .....+.++.|.+++ +.+..++.+.+ .++.+..|....
T Consensus 316 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~G~~~~~~~~~~~~~~l~~~g~ 392 (432)
T 3a9z_A 316 DYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQC---QTLLASVGASCHSDHEDRPSPVLLSCGI 392 (432)
T ss_dssp HHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHC---SSEECBSSCGGGGGGTTSCCHHHHHTTC
T ss_pred HHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHh---cCeEEeccccccCCCCCCccHHHHhcCC
Confidence 9999999995 76543 221 112344467777754 34566676655 266666553211
Q ss_pred ----CCcEEEEeecCCCCHHHH
Q 017726 342 ----AGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 342 ----~~~~iRi~~~~~~~~~~~ 359 (367)
.++++||++....+.+|+
T Consensus 393 ~~~~~~~~iRis~~~~~t~eei 414 (432)
T 3a9z_A 393 PVDVARNAVRLSVGRSTTRAEV 414 (432)
T ss_dssp CHHHHTTEEEEECCTTCCHHHH
T ss_pred CccccCceEEEEcCCCCCHHHH
Confidence 136899998765554433
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=244.66 Aligned_cols=298 Identities=11% Similarity=0.011 Sum_probs=219.7
Q ss_pred CCChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhc------CCCCceEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 18 VHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFK------TTSGTPFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~------~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
.+.++.+.+++.+.... ...|.. .. .++|+.++++++ .++ +++++++|+++++..++.+++.+||+|++.
T Consensus 35 ~~~~~~v~~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~-~~i~~t~g~~~a~~~~~~~~~~~gd~vl~~ 111 (377)
T 3fdb_A 35 FSTCPAVLQAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQARP-EWIFPIPDVVRGLYIAIDHFTPAQSKVIVP 111 (377)
T ss_dssp SCCCHHHHHHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCG-GGEEEESCHHHHHHHHHHHHSCTTCCEEEE
T ss_pred CCCCHHHHHHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCH-HHEEEeCChHHHHHHHHHHhcCCCCEEEEc
Confidence 35678888888775432 112221 22 577888888777 544 459999999999999999999999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcC
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR 167 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~ 167 (367)
.+.|++.. ..++..|.+++.++.+.+ +|++++++++++ +++++++++|+||||.++| +++|.++|++
T Consensus 112 ~~~~~~~~--~~~~~~g~~~~~~~~~~~--~d~~~l~~~l~~----~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-- 181 (377)
T 3fdb_A 112 TPAYPPFF--HLLSATQREGIFIDATGG--INLHDVEKGFQA----GARSILLCNPYNPLGMVFAPEWLNELCDLAHR-- 181 (377)
T ss_dssp ESCCTHHH--HHHHHHTCCEEEEECTTS--CCHHHHHHHHHT----TCCEEEEESSBTTTTBCCCHHHHHHHHHHHHH--
T ss_pred CCCcHhHH--HHHHHcCCEEEEccCCCC--CCHHHHHHHhcc----CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHH--
Confidence 99888753 557778999999999876 999999999984 5699999999999999986 5667777989
Q ss_pred CCcEEEEeeeeccCcee-----eccc---cccceEEEecCCCcccCCCc--ceeeee-CHHHHHHhccCCCCceeechHH
Q 017726 168 HPALFLVDGVSSICAID-----FRMD---EWGIDVALTGSQKALSLPTG--MGIVCA-SPKALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~-----~~~~---~~~~d~~~~s~~K~~~g~~g--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 236 (367)
+|+++|+|++|+.+... .++. ..+.++++.|++|+++ .+| +|+++. ++++++.+.....
T Consensus 182 ~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~~~--------- 251 (377)
T 3fdb_A 182 YDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWN-IAGLKCAQIIFSNPSDAEHWQQLSP--------- 251 (377)
T ss_dssp TTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTT-CGGGCCEEEECCSHHHHHHHHHSCH---------
T ss_pred cCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhcc-CcchhheEEEeCCHHHHHHHHHHHH---------
Confidence 99999999999863321 1221 1345699999999993 444 687665 7888777754210
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCCceEEEEcC
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~ 314 (367)
...++++...+.++.+++.... ..++++++++.++++++.+.|++. |+.+..+ ..+.++++.++
T Consensus 252 ---------~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~~~~ 317 (377)
T 3fdb_A 252 ---------VIKDGASTLGLIAAEAAYRYGT-DFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPM----QATYLMWIDFR 317 (377)
T ss_dssp ---------HHHCCCCHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCC----SBCSEEEEECT
T ss_pred ---------hhcCCCCHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHHhhCCCceEecC----CeeEEEEEECc
Confidence 0123466655556555665432 226788899999999999999994 8888776 45556678886
Q ss_pred CCCCHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecC
Q 017726 315 SHINSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLG 352 (367)
Q Consensus 315 ~~~~~~~l~~~L~~~~gv~v~~g~~~~--~~~~iRi~~~~ 352 (367)
......++++.|.+++||.+.+|..+. .++++||++..
T Consensus 318 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~ 357 (377)
T 3fdb_A 318 DTTIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFAT 357 (377)
T ss_dssp TSCCCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS
T ss_pred ccCCCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCC
Confidence 521236788888777799999875432 35789999765
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-32 Score=245.47 Aligned_cols=306 Identities=12% Similarity=0.060 Sum_probs=228.1
Q ss_pred CCCChHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 17 PVHIPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 17 p~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
|.++++.+.+++.+.... ...|.. ....++|+.+++++|.+++ ++++++|+++|+..++.+++.+||+|++..+
T Consensus 37 ~~~~~~~v~~a~~~~~~~~~~~~~~y~~-~~~~~lr~~la~~~g~~~~-~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p 114 (360)
T 3hdo_A 37 PYPPSPEVVKAILEELGPDGAALRIYPS-ASSQKLREVAGELYGFDPS-WIIMANGSDEVLNNLIRAFAAEGEEIGYVHP 114 (360)
T ss_dssp SSCCCHHHHHHHHHHHTTTCGGGGSCCC-SSCHHHHHHHHHHHTCCGG-GEEEESSHHHHHHHHHHHHCCTTCEEEEESS
T ss_pred CCCCCHHHHHHHHHHHhcccchhhcCCC-CchHHHHHHHHHHhCcCcc-eEEEcCCHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 456788899988875433 112211 1246899999999997654 5999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEE
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALF 172 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~v 172 (367)
.|++.. ..++..|.+++.++.+.++.+ +++++. .+++++++++|+||||.++|++++.++|++ +|+++
T Consensus 115 ~~~~~~--~~~~~~g~~~~~v~~~~~~~~--~~l~~~------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~--~~~~l 182 (360)
T 3hdo_A 115 SYSYYG--TLAEVQGARVRTFGLTGDFRI--AGFPER------YEGKVFFLTTPNAPLGPSFPLEYIDELARR--CAGML 182 (360)
T ss_dssp SCTHHH--HHHHHHTCEEEEECBCTTSSB--TTCCSS------BCSSEEEEESSCTTTCCCCCHHHHHHHHHH--BSSEE
T ss_pred ChHHHH--HHHHHCCCEEEEeeCCCCCCH--HHHHhh------cCCCEEEEeCCCCCCCCCcCHHHHHHHHHH--CCCEE
Confidence 887753 557788999999998766554 443322 245799999999999999999999999999 89999
Q ss_pred EEeeeeccCce--eecc-ccccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccC
Q 017726 173 LVDGVSSICAI--DFRM-DEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP 248 (367)
Q Consensus 173 i~D~~~~~~~~--~~~~-~~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (367)
|+|++|+.... ..+. ...+.++++.|++|+++ ++.++|++++++++++++..... .
T Consensus 183 i~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~--------------------~ 242 (360)
T 3hdo_A 183 VLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRD--------------------H 242 (360)
T ss_dssp EEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHHHHHHHHHHSC--------------------S
T ss_pred EEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeCHHHHHHHHHhCC--------------------C
Confidence 99999885321 1111 12356799999999984 23446999999999887764311 2
Q ss_pred CCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHh
Q 017726 249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQ 328 (367)
Q Consensus 249 ~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 328 (367)
++++...+.++.++++. ...++++++++.++++++.+.|++.|+.+..+ .+.++++.++ +.+..++.+.|.+
T Consensus 243 ~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-----~~~~~~~~~~-~~~~~~l~~~l~~ 314 (360)
T 3hdo_A 243 YNLDRLAQAACVAALRD--QAYLSECCRRIRETREWFTTELRSIGYDVIPS-----QGNYLFATPP-DRDGKRVYDGLYA 314 (360)
T ss_dssp CCSCHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHTTCEECCC-----SSSEEEEECT-TCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCEEcCC-----CccEEEEECC-CCCHHHHHHHHHH
Confidence 34666666666666664 22277888999999999999999988877654 3346777774 5688899999975
Q ss_pred hCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 329 RYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 329 ~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
+||.++++..+..++++||++. ..++.|.+.++|++
T Consensus 315 -~gi~v~~~~~~~~~~~iRis~~-~~~e~~~l~~al~~ 350 (360)
T 3hdo_A 315 -RKVLVRHFSDPLLAHGMRISIG-TREEMEQTLAALKE 350 (360)
T ss_dssp -TTEECBCCCSTTTTTSEEEECC-CHHHHHHHHHHHHH
T ss_pred -CCEEEEECCCCCCCCEEEEEcC-CHHHHHHHHHHHHH
Confidence 5999998765445578999964 55666666666654
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-31 Score=241.48 Aligned_cols=306 Identities=11% Similarity=0.068 Sum_probs=224.6
Q ss_pred CCCChHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCCCCCeE
Q 017726 17 PVHIPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRI 87 (367)
Q Consensus 17 p~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~v 87 (367)
|.+.++.+.+++.+.... ...|..... .++++.+++++ |.. .++++++++|+++++..++.+++.+||+|
T Consensus 41 ~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~~~gd~V 119 (369)
T 3cq5_A 41 PYPPSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRTA 119 (369)
T ss_dssp CSCCCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCSTTCEE
T ss_pred CCCCCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhcCCCCEE
Confidence 345677888887764321 111211112 47777777773 333 23469999999999999999989999999
Q ss_pred EEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcC
Q 017726 88 ISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYR 167 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~ 167 (367)
++..+.|++.. ..++..|.+++.++.+.++.+|++++++++++ .++++|++++|+||||.++|.+++.++|+.
T Consensus 120 l~~~~~y~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~~~~l~~l~~~-- 192 (369)
T 3cq5_A 120 LGFQPSYSMHP--ILAKGTHTEFIAVSRGADFRIDMDVALEEIRA---KQPDIVFVTTPNNPTGDVTSLDDVERIINV-- 192 (369)
T ss_dssp EEEESSCTHHH--HHHHHTTCEEEEEECCTTSSCCHHHHHHHHHH---HCCSEEEEESSCTTTCCCCCHHHHHHHHHH--
T ss_pred EEcCCChHHHH--HHHHHcCCEEEEecCCcCCCCCHHHHHHHhhc---cCCCEEEEeCCCCCCCCCCCHHHHHHHHHh--
Confidence 99999888753 45777899999999887778999999999984 156999999999999999999999999999
Q ss_pred CCcEEEEeeeeccCcee---ecc-cccc-ceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHH
Q 017726 168 HPALFLVDGVSSICAID---FRM-DEWG-IDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~---~~~-~~~~-~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (367)
.++++|+|++|+.+... ... ...+ .++++.|+||+++ ++| +|++++++++++++.....
T Consensus 193 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~------------- 258 (369)
T 3cq5_A 193 APGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFD-FAGGRLGYFVANPAFIDAVMLVRL------------- 258 (369)
T ss_dssp CSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTS-CGGGCCEEEEECTHHHHHHHTTSC-------------
T ss_pred CCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcC-CcccceEEEEeCHHHHHHHHHcCC-------------
Confidence 78999999999876532 121 2234 6799999999995 344 6999999998887764311
Q ss_pred hhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHH
Q 017726 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSS 320 (367)
Q Consensus 241 ~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (367)
.++++...+.++.++++.. ..+++.++++.++++++.+.|++.|+.+..+ .+.++++.++ .+..
T Consensus 259 -------~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-----~~~~~~~~~~--~~~~ 322 (369)
T 3cq5_A 259 -------PYHLSALSQAAAIVALRHS--ADTLGTVEKLSVERVRVAARLEELGYAVVPS-----ESNFVFFGDF--SDQH 322 (369)
T ss_dssp -------TTCSCHHHHHHHHHHHHTH--HHHHTHHHHHHHHHHHHHHHHHHHTCEEECC-----SSSEEEEECC--SSHH
T ss_pred -------CCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHhCCCEECCC-----CCeEEEEECC--CCHH
Confidence 2346665555555555532 2267788899999999999999888877643 2346778875 4678
Q ss_pred HHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 321 EIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 321 ~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
++.+.|. ++||.+.+| . .++++||++. ..++.+...++|.
T Consensus 323 ~l~~~l~-~~gi~v~~~-~--~~~~iRis~~-~~~~i~~~~~~l~ 362 (369)
T 3cq5_A 323 AAWQAFL-DRGVLIRDV-G--IAGHLRTTIG-VPEENDAFLDAAA 362 (369)
T ss_dssp HHHHHHH-HTTEECBCC-S--CTTEEEEECC-CHHHHHHHHHHHH
T ss_pred HHHHHHH-HCCEEEEEC-C--CCCeEEEEeC-CHHHHHHHHHHHH
Confidence 8999996 559999987 1 2468999976 3344444555544
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=252.60 Aligned_cols=300 Identities=13% Similarity=0.095 Sum_probs=217.1
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
+.++.+.+++.+.... ...|.......++++.+++++ |.+ +++++++++|+++|+..++.+++.+||+|+++.+
T Consensus 54 ~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~ 133 (406)
T 1xi9_A 54 QPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGP 133 (406)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCCCCCEEEEcCC
Confidence 5567788877664322 112222223456777777766 332 2356999999999999999998899999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcC
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR 167 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~ 167 (367)
.|++.. ..++..|.+++.++.+. ++.+|+++++++++ +++++|++++|+||||.++| +++|.++|++
T Consensus 134 ~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~-- 205 (406)
T 1xi9_A 134 SYPPYT--GLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKIT----DRTKAIAVINPNNPTGALYDKKTLEEILNIAGE-- 205 (406)
T ss_dssp CCHHHH--HHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--
T ss_pred CCccHH--HHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhC----cCceEEEEECCCCCCCCCcCHHHHHHHHHHHHH--
Confidence 887743 55677899999998864 45689999999997 46799999999999999986 8889999999
Q ss_pred CCcEEEEeeeeccCce---eecccc--ccc-eEEEecCCCcccCCCc--ceeee--eCH----HHHHHhccCCCCceeec
Q 017726 168 HPALFLVDGVSSICAI---DFRMDE--WGI-DVALTGSQKALSLPTG--MGIVC--ASP----KALEASKTAKSVRVFFD 233 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~---~~~~~~--~~~-d~~~~s~~K~~~g~~g--~g~~~--~~~----~~~~~~~~~~~~~~~~~ 233 (367)
+|+++|+|++|+.+.. ..++.. .+. +++++|+||+++ ++| +|+++ .++ ++++++....
T Consensus 206 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~l~~~l~~~~------- 277 (406)
T 1xi9_A 206 YEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYF-ATGWRLGYMYFVDPENKLSEVREAIDRLA------- 277 (406)
T ss_dssp HTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTC-CGGGCCEEEEEECTTCTTHHHHHHHHHHH-------
T ss_pred cCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccC-CCccEEEEEEEecCchhHHHHHHHHHHHH-------
Confidence 9999999999986543 111111 356 899999999995 555 79998 888 8877765321
Q ss_pred hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEE
Q 017726 234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVI 312 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 312 (367)
... ++++...+.++.++++...+ .++++++++.++++++.+.|+++ |+.+..+ .++.++++.
T Consensus 278 ------~~~------~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~----~~~~~~~~~ 340 (406)
T 1xi9_A 278 ------RIR------LCPNTPAQFAAIAGLTGPMD-YLKEYMKKLKERRDYIYKRLNEIPGISTTKP----QGAFYIFPK 340 (406)
T ss_dssp ------HHT------CCSCSHHHHHHHHHHHSCCH-HHHHHHHHHHHHHHHHHHHHHTSTTEECCCC----CBSSEECCE
T ss_pred ------Hhh------cCCCHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHHHhCCCCeeecC----CeeEEEEEe
Confidence 000 23454444555555542212 26778889999999999999988 7777655 344455566
Q ss_pred cCC--CCCHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeec
Q 017726 313 VPS--HINSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHL 351 (367)
Q Consensus 313 ~~~--~~~~~~l~~~L~~~~gv~v~~g~~~~--~~~~iRi~~~ 351 (367)
++. +.+..++.+.|.+++||.+.+|..+. .+.++||++.
T Consensus 341 ~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~ 383 (406)
T 1xi9_A 341 IEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL 383 (406)
T ss_dssp ECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC
T ss_pred cCccCCCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec
Confidence 654 46788999999755699999875432 2568999976
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=244.73 Aligned_cols=284 Identities=16% Similarity=0.142 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCC
Q 017726 40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 40 ~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 119 (367)
..+...++++.+++++|.+. .+++++|++++..++.+++.+||.|++..+.|.+.. ..++..|.+++.++.
T Consensus 86 ~~~~~~~l~~~la~~~~~~~---~i~~~sGt~a~~~~l~~~~~~gd~v~~~~~~~~~~~--~~~~~~g~~~~~~~~---- 156 (399)
T 3tqx_A 86 TQTIHKELEKDISEFLGTDD---TILYSSCFDANGGLFETLLGPEDAIISDELNHASII--DGIRLCKAQRYRYKN---- 156 (399)
T ss_dssp CBHHHHHHHHHHHHHHTCSE---EEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHH--HHHHSCCSEEEEECT----
T ss_pred CchHHHHHHHHHHHHHCCCc---EEEECchHHHHHHHHHHhcCCCCEEEECCcccHHHH--HHHHHcCCceeEeCC----
Confidence 34678899999999999763 345566789999999889999999999999777643 457778999988886
Q ss_pred CCCHHHHHHHHhccCC--CCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCcee------ecccc--
Q 017726 120 GAKLDVLASKLAADTA--HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID------FRMDE-- 189 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~--~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~------~~~~~-- 189 (367)
.|++++++++++... .++++|++++++||||.++|+++|.++|++ +|+++|+|++|+.+... .....
T Consensus 157 -~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 233 (399)
T 3tqx_A 157 -NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADK--YNALVMVDDSHAVGFIGENGRGTPEYCGVA 233 (399)
T ss_dssp -TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHH--TTCEEEEECTTTTTTSSTTSCCHHHHHTCT
T ss_pred -CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHH--cCCEEEEECCccccccCCCCCchHHhhCCC
Confidence 378899998886321 168999999999999999999999999999 99999999999754322 11111
Q ss_pred ccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHh
Q 017726 190 WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE 269 (367)
Q Consensus 190 ~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~ 269 (367)
.+.|+++.|+||+++|++| |++++++++++.+..... .+. +..+++...+.++.++++... .
T Consensus 234 ~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~~~~~~~------------~~~----~~~~~~~~~~~~~~~~l~~~~-~ 295 (399)
T 3tqx_A 234 DRVDILTGTLGKALGGASG-GYTSGHKEIIEWLRNRSR------------PYL----FSNTVAPVIVATSLKVLELLK-T 295 (399)
T ss_dssp TCCSEEEEESSSSSCSSCC-EEEEECHHHHHHHHHHCH------------HHH----SSCCCCHHHHHHHHHHHHHHH-H
T ss_pred CCCcEEEecchHhcccCce-EEEEcCHHHHHHHHHhCc------------cee----ccCCCcHHHHHHHHHHHHHHh-h
Confidence 2579999999999986877 999999999887764210 000 122467766677777777664 4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC---CCCcEE
Q 017726 270 GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK---VAGKVF 346 (367)
Q Consensus 270 g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~---~~~~~i 346 (367)
+.+++++++.++++++.+.|+++|+++..+ .+.++++.+++..+..++++.|.++ ||.+.++..+ ...+++
T Consensus 296 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~~~~~~~~~i 369 (399)
T 3tqx_A 296 EGPQLRKQLQENSRYFRAGMEKLGFQLVPG-----NHPIIPVMLGDAQLATNMADHLLQE-GIYVVGFSYPVVPMGKARI 369 (399)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTCCBCCC-----SSSEEEEEEECHHHHHHHHHHHHHT-TEECCEECTTTSCTTCEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHcCCCcCCC-----CCCEEEEEeCCHHHHHHHHHHHHHC-CCEEeeeCCCCCCCCCceE
Confidence 478899999999999999999998887754 3346778776544677899999865 9999976432 234679
Q ss_pred EEeecCCCCHHHH
Q 017726 347 RIGHLGHLNEVMF 359 (367)
Q Consensus 347 Ri~~~~~~~~~~~ 359 (367)
|+++....+++++
T Consensus 370 Ri~~~~~~~~~~i 382 (399)
T 3tqx_A 370 RVQMSAVHTQQQL 382 (399)
T ss_dssp EEECCTTCCHHHH
T ss_pred EEEeecCCCHHHH
Confidence 9998655554443
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-31 Score=247.01 Aligned_cols=315 Identities=16% Similarity=0.125 Sum_probs=224.4
Q ss_pred ChHHHHHHHccCCCCC----CCCcHHHHHHHHHHHHHHHh----cCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 20 IPDQVIRAMNRNNEDY----RSPAVPALTKTLLEDIKKIF----KTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~~----~~~~~~~~~~~~~~~la~~~----~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
.++.+.+++.+..... ..|.......++|+.+++++ |.+++++|++|+|+++++..++.+++++||.|++..
T Consensus 92 p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~ 171 (448)
T 3aow_A 92 PKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEA 171 (448)
T ss_dssp CHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeC
Confidence 4666777766543211 12222234567788888877 874334699999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHh----ccCCCCccEE-EEEecCCCcccccc---HHHHHHHH
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA----ADTAHTIKAI-CIVHNETATGVTNN---LSKVRKLL 163 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~----~~~~~~~~lv-~~~~~~n~tG~~~~---~~~i~~~~ 163 (367)
|.|++.. ..++..|.+++.++.+.++ +|+++++++++ +. +++++| ++++++||||.+++ +++|.++|
T Consensus 172 p~y~~~~--~~~~~~g~~~~~v~~~~~g-~d~~~L~~~l~~~~~~~--~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la 246 (448)
T 3aow_A 172 PTYLAAL--QAFNFYEPQYIQIPLDDEG-MKVEILEEKLKELKSQG--KKVKVVYTVPTFQNPAGVTMNEDRRKYLLELA 246 (448)
T ss_dssp SCCHHHH--HHHHTTCCEEEEEEEETTE-ECHHHHHHHHHHHHHTT--CCEEEEEECCSSCTTTCCCCCHHHHHHHHHHH
T ss_pred CChHHHH--HHHHHcCCEEEEeccCCCC-CCHHHHHHHHhhhhccC--CCCeEEEECCCCCCCcCCCCCHHHHHHHHHHH
Confidence 9887753 5567789999999987654 89999999997 42 367888 56899999999987 56899999
Q ss_pred HhcCCCcEEEEeeeeccCcee----e---ccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHH
Q 017726 164 DEYRHPALFLVDGVSSICAID----F---RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 164 ~~~~~~~~vi~D~~~~~~~~~----~---~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (367)
++ +|++||+|++|+.+... . .+...+.++++.|++|+++....+|++++++++++++.....
T Consensus 247 ~~--~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~~GlriG~v~~~~~l~~~l~~~~~--------- 315 (448)
T 3aow_A 247 SE--YDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILAPGFRIGWMVGDPGIIRKMEIAKQ--------- 315 (448)
T ss_dssp HH--HTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTCGGGCCEEEEECHHHHHHHHHHHH---------
T ss_pred HH--cCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhccccccEEEEEeCHHHHHHHHHHHH---------
Confidence 99 99999999999865431 1 122235689999999999522237999999999887763210
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHH-HhChHHHHHHHHHHHHHHHHHHHHc---CCccccCCCccCCCceEEEE
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-EEGLENVIERHRRLGKATRLAVEAW---GLKNCTQKEEWFSDTVTAVI 312 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~-~~g~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~~~~~~ 312 (367)
.. .++++.....++..+++... +..++++++++.++++++.+.|++. |+.+..+ ..+.+++++
T Consensus 316 ------~~---~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p----~~g~~~~v~ 382 (448)
T 3aow_A 316 ------ST---DLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKP----EGGMFIWVT 382 (448)
T ss_dssp ------HH---HSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCC----SBSSEEEEE
T ss_pred ------Hh---cCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCC----CccEEEEEE
Confidence 00 11245544444454554321 1226778888899999999999985 6777665 345678899
Q ss_pred cCCCCCHHHHHHHHHhhCCeEEccCCCCC----CCcEEEEeecCC-CCHHHHHHhhh
Q 017726 313 VPSHINSSEIVRRAWQRYNLSLGLGLNKV----AGKVFRIGHLGH-LNEVMFNFQLL 364 (367)
Q Consensus 313 ~~~~~~~~~l~~~L~~~~gv~v~~g~~~~----~~~~iRi~~~~~-~~~~~~~~~~l 364 (367)
++++.+..++++.|.++ ||.+.+|..+. ..+++||++... .++.+...+.|
T Consensus 383 ~~~~~~~~~l~~~l~~~-gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L 438 (448)
T 3aow_A 383 LPDGIDSKKMLERAIKK-GVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRL 438 (448)
T ss_dssp CSTTCCHHHHHHHHHHT-TEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHC-CcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHH
Confidence 87677888999999877 99999885432 356899997552 33334444333
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-30 Score=236.88 Aligned_cols=285 Identities=15% Similarity=0.093 Sum_probs=214.3
Q ss_pred HHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCC-CeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCC
Q 017726 44 TKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPG-DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAK 122 (367)
Q Consensus 44 ~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~g-d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d 122 (367)
..++|+.++++++.+++ ++++++|+++++..++.+++.+| |+|+++.|+|+++. ..++..|.+++.++.+.++.+|
T Consensus 60 ~~~lr~~la~~~~~~~~-~v~~~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~d 136 (356)
T 1fg7_A 60 PKAVIENYAQYAGVKPE-QVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYS--VSAETIGVECRTVPTLDNWQLD 136 (356)
T ss_dssp CHHHHHHHHHHHTSCGG-GEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHH--HHHHHHTCEEEECCCCTTSCCC
T ss_pred HHHHHHHHHHHhCCChH-HEEEcCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHH--HHHHHcCCEEEEeeCCCCCCCC
Confidence 57899999999998754 59999999999999999988999 99999999887754 4567789999999988777889
Q ss_pred HHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCcee---ecc-ccccceEEEec
Q 017726 123 LDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID---FRM-DEWGIDVALTG 198 (367)
Q Consensus 123 ~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~---~~~-~~~~~d~~~~s 198 (367)
+++++++++ ++++|++++|+||||.++|.+++.++++...+|+++|+|++|+.+... .+. ...+.++++.|
T Consensus 137 ~~~l~~~i~-----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s 211 (356)
T 1fg7_A 137 LQGISDKLD-----GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRT 211 (356)
T ss_dssp HHHHHTSCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEE
T ss_pred HHHHHHHhc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEec
Confidence 999988775 469999999999999999988888888763279999999999854411 122 23357899999
Q ss_pred CCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 199 SQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
+||+++ ++| +|++++++++++++.... . +++.+.....+..++++......+++.++
T Consensus 212 ~sK~~g-~~G~r~G~~~~~~~~~~~l~~~~-----------------~---~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 270 (356)
T 1fg7_A 212 LSKAFA-LAGLRCGFTLANEEVINLLMKVI-----------------A---PYPLSTPVADIAAQALSPQGIVAMRERVA 270 (356)
T ss_dssp SSSTTC-CGGGCCEEEEECHHHHHHHHHHS-----------------C---SSCSCHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred chHhhc-CchhhhEEEEeCHHHHHHHHHhc-----------------C---CCCCCHHHHHHHHHHhcCccHHHHHHHHH
Confidence 999984 455 699999999988776431 1 23456544444444444322111677888
Q ss_pred HHHHHHHHHHHHHHHcC-CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEcc-CCCCCCCcEEEEeecCCC
Q 017726 277 RHRRLGKATRLAVEAWG-LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGL-GLNKVAGKVFRIGHLGHL 354 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~-g~~~~~~~~iRi~~~~~~ 354 (367)
++.++++++.+.|++++ +....+ ..+.+++++++ +..++.++|. ++||.+++ |..+..++++||++. ..
T Consensus 271 ~~~~~~~~l~~~L~~~~~~~~~~~----~~~~~~~~~~~---~~~~l~~~L~-~~gI~v~~~g~~~~~~~~iRis~~-~~ 341 (356)
T 1fg7_A 271 QIIAEREYLIAALKEIPCVEQVFD----SETNYILARFK---ASSAVFKSLW-DQGIILRDQNKQPSLSGCLRITVG-TR 341 (356)
T ss_dssp HHHHHHHHHHHHHHHSTTEEEECC----CSSSEEEEEET---THHHHHHHHH-HTTEECEECTTSTTCTTEEEEECC-CH
T ss_pred HHHHHHHHHHHHHHhCCCceEECC----CCCeEEEEECC---CHHHHHHHHH-HCCEEEEECCCCCCCCCeEEEEeC-CH
Confidence 89999999999999985 222222 23456788885 6788999995 56999998 755444568999965 44
Q ss_pred CHHHHHHhhhhc
Q 017726 355 NEVMFNFQLLFQ 366 (367)
Q Consensus 355 ~~~~~~~~~l~~ 366 (367)
++.+...++|++
T Consensus 342 ~e~~~~~~~l~~ 353 (356)
T 1fg7_A 342 EESQRVIDALRA 353 (356)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 555666666654
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-30 Score=238.16 Aligned_cols=303 Identities=13% Similarity=0.031 Sum_probs=219.8
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHH-HHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKT-LLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~-~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
+.++.+.+++.+.... ...|... ..+ +|+.+++++ |.+ +++++++++|+++++..++.+++.+||+|++..
T Consensus 41 ~~~~~v~~a~~~~~~~~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~ 118 (390)
T 1d2f_A 41 ATAPCIIEALNQRLMHGVFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHT 118 (390)
T ss_dssp CCCHHHHHHHHHHHTTCCCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcC
Confidence 5678888888775432 1122111 345 777777766 532 335699999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCCC---CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHh
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDWG---EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE 165 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~---~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~ 165 (367)
|.|++.. ..++..|.+++.++.+.+ +.+|++++++++++ .++++|++++|+||||.++| +++|.++|++
T Consensus 119 p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~ 193 (390)
T 1d2f_A 119 PAYDAFY--KAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK---PECKIMLLCSPQNPTGKVWTCDELEIMADLCER 193 (390)
T ss_dssp SCCHHHH--HHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS---TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHH
T ss_pred CCcHHHH--HHHHHCCCEEEEeecccCCCccccCHHHHHHHhcc---CCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHH
Confidence 9887753 456778999999998643 25899999999974 36799999999999999987 7889999999
Q ss_pred cCCCcEEEEeeeeccCce----eeccccc--c-ceEEEecCCCcccCCCc--ceeeeeC-HHHHHHhccCCCCceeechH
Q 017726 166 YRHPALFLVDGVSSICAI----DFRMDEW--G-IDVALTGSQKALSLPTG--MGIVCAS-PKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~----~~~~~~~--~-~d~~~~s~~K~~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 235 (367)
+|+++|+|++|+.+.. ..+.... + .|. +.|+||+++ ++| +|+++++ +++++.+....
T Consensus 194 --~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~~--------- 260 (390)
T 1d2f_A 194 --HGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFN-IPALTGAYGIIENSSSRDAYLSAL--------- 260 (390)
T ss_dssp --TTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHT-CGGGCCEEEEECSHHHHHHHHHHH---------
T ss_pred --cCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhc-ccChhheEEEECCHHHHHHHHHHH---------
Confidence 9999999999986432 1222222 1 267 999999994 444 6999985 77777665321
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-c-CCccccCCCccCCCceEEEEc
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQKEEWFSDTVTAVIV 313 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~ 313 (367)
.+.+..++++...+.++.++++...+ .+++.++++.++++++.+.|++ + |+.+..+ .++.++++.+
T Consensus 261 -------~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~~~ 328 (390)
T 1d2f_A 261 -------KGRDGLSSPSVLALTAHIAAYQQGAP-WLDALRIYLKDNLTYIADKMNAAFPELNWQIP----QSTYLAWLDL 328 (390)
T ss_dssp -------HTTSCCCSCCHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCC----SBCSEEEEEC
T ss_pred -------hhhcccCCCCHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHHHhhCCCCEEecC----CccEEEEEEc
Confidence 00001225666665666666654222 2778888999999999999998 5 7777665 3555667888
Q ss_pred CCC-CCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCC
Q 017726 314 PSH-INSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGH 353 (367)
Q Consensus 314 ~~~-~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~ 353 (367)
+.. .+..++.+.|.+++||.+.+|..+ ..++++||++...
T Consensus 329 ~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~~ 371 (390)
T 1d2f_A 329 RPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCP 371 (390)
T ss_dssp GGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSC
T ss_pred cccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecCC
Confidence 542 578899999986679999987543 2356899997764
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-32 Score=250.62 Aligned_cols=305 Identities=12% Similarity=0.056 Sum_probs=220.2
Q ss_pred CCChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhc------------CCCCceEEecCChhHHHHHHHHccCCC
Q 017726 18 VHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFK------------TTSGTPFLIPTTGTGAWESALTNTLSP 83 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~------------~~~~~~v~~~~ggt~al~~~~~~~~~~ 83 (367)
.++++.+.+++.+.... ...|.......++|+.++++++ .++ +++++++|+++++..++.+++.+
T Consensus 49 ~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~-~~v~~~~g~~~al~~~~~~l~~~ 127 (416)
T 1bw0_A 49 LLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVK-DNVVLCSGGSHGILMAITAICDA 127 (416)
T ss_dssp SCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCG-GGEEEESHHHHHHHHHHHHHCCT
T ss_pred CCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCc-ceEEEeCChHHHHHHHHHHhCCC
Confidence 56788888888775322 1123222345688889999888 444 45999999999999999999999
Q ss_pred CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHH
Q 017726 84 GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSK 158 (367)
Q Consensus 84 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~ 158 (367)
||+|++..|+|++.. ..++..|++++.++.+.+ +.+|+++++++++ ++++++++++|+||||.++| +++
T Consensus 128 gd~vl~~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~v~i~~p~nptG~~~~~~~l~~ 201 (416)
T 1bw0_A 128 GDYALVPQPGFPHYE--TVCKAYGIGMHFYNCRPENDWEADLDEIRRLKD----DKTKLLIVTNPSNPCGSNFSRKHVED 201 (416)
T ss_dssp TCEEEEEESCCTHHH--HHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred CCEEEEcCCCcHhHH--HHHHHcCcEEEEeecCcccCCCCCHHHHHHHhc----cCCeEEEEeCCCCCCCcccCHHHHHH
Confidence 999999999888753 557788999999987643 5689999999987 46799999999999999998 889
Q ss_pred HHHHHHhcCCCcEEEEeeeeccCce--------eeccc---cccceEEEecCCCcccCCCc--ceeeeeCHH--HHHHhc
Q 017726 159 VRKLLDEYRHPALFLVDGVSSICAI--------DFRMD---EWGIDVALTGSQKALSLPTG--MGIVCASPK--ALEASK 223 (367)
Q Consensus 159 i~~~~~~~~~~~~vi~D~~~~~~~~--------~~~~~---~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~--~~~~~~ 223 (367)
|.++|++ +|+++|+|++|+.+.. ..+.. ..+.++++.|++|+++ .+| +|+++++++ +++++.
T Consensus 202 i~~~~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~Glr~G~~~~~~~~~~~~~~~ 278 (416)
T 1bw0_A 202 IVRLAEE--LRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLV-VPGWRLGWLLYVDPHGNGPSFL 278 (416)
T ss_dssp HHHHHHH--HTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTS-CGGGCCEEEEEECTTCSCHHHH
T ss_pred HHHHHHH--cCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCC-CCCceEEEEEeeCchhhHHHHH
Confidence 9999999 9999999999886321 11221 1123688899999984 344 699998764 333332
Q ss_pred cCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc
Q 017726 224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE 302 (367)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 302 (367)
.. ...+.. ..++++.....++.++++...+..+++.+++++++++++.+.|+++ |+.+..+
T Consensus 279 ~~------------~~~~~~---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~--- 340 (416)
T 1bw0_A 279 EG------------LKRVGM---LVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMP--- 340 (416)
T ss_dssp HH------------HHHHHH---HHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCC---
T ss_pred HH------------HHHHhc---cccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCC---
Confidence 10 001100 0234666555666666653223447788889999999999999987 8776654
Q ss_pred cCCCceEEEEcCC-----CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeec
Q 017726 303 WFSDTVTAVIVPS-----HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHL 351 (367)
Q Consensus 303 ~~~~~~~~~~~~~-----~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~ 351 (367)
..+.+++++++. ..+..++++.|.+++||.+.+|..+..++++||++.
T Consensus 341 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~ 393 (416)
T 1bw0_A 341 -RGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTT 393 (416)
T ss_dssp -CBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC
T ss_pred -CeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEec
Confidence 234566777742 246788999886566999998865545678999984
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-32 Score=247.72 Aligned_cols=302 Identities=16% Similarity=0.068 Sum_probs=220.2
Q ss_pred ChHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcc
Q 017726 20 IPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF 95 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~ 95 (367)
.++.+.+++.+.... ...|.......++++.+++++|.++ +++++++|+++++..++.+++.+||+|++..|.|+
T Consensus 48 ~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~-~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~ 126 (397)
T 2zyj_A 48 PKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIGVRP-EEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYM 126 (397)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHTSCG-GGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCH
T ss_pred CHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhCCCh-hhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcH
Confidence 467778777664321 1222222345789999999999654 45999999999999999998999999999999887
Q ss_pred hHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEE-EEEecCCCccccccHH---HHHHHHHhcCCCcE
Q 017726 96 SLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAI-CIVHNETATGVTNNLS---KVRKLLDEYRHPAL 171 (367)
Q Consensus 96 ~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv-~~~~~~n~tG~~~~~~---~i~~~~~~~~~~~~ 171 (367)
+.. ..++..|.+++.++.+.++ +|++++++++++ .++++| ++++++||||.++|.+ +|.++|++ +|++
T Consensus 127 ~~~--~~~~~~g~~~~~~~~~~~~-~d~~~l~~~l~~---~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~--~~~~ 198 (397)
T 2zyj_A 127 GAI--QAFRLQGPRFLTVPAGEEG-PDLDALEEVLKR---ERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVME--RGLV 198 (397)
T ss_dssp HHH--HHHHTTCCEEEEEEEETTE-ECHHHHHHHHHH---CCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHH--HTCC
T ss_pred HHH--HHHHHcCCEEEecCcCCCC-CCHHHHHHHHhh---cCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHH--cCCE
Confidence 753 4567789999999987654 899999999985 256887 5789999999999755 88999999 9999
Q ss_pred EEEeeeeccCce----eeccccc------cceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHh
Q 017726 172 FLVDGVSSICAI----DFRMDEW------GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFY 241 (367)
Q Consensus 172 vi~D~~~~~~~~----~~~~~~~------~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (367)
+|+|++|+.+.. ..++... +.++++.|+||++++..++|++++++++++++..... .+
T Consensus 199 li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~l~~~~~------------~~ 266 (397)
T 2zyj_A 199 VVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGLRVAFAVAHPEALQKLVQAKQ------------GA 266 (397)
T ss_dssp EEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHH------------HH
T ss_pred EEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccccccceeEEEecCHHHHHHHHHHHH------------hh
Confidence 999999986532 1222222 2348899999999622447999999998877753210 00
Q ss_pred hcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc---CCccccCCCccCCCceEEEEcCCCCC
Q 017726 242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW---GLKNCTQKEEWFSDTVTAVIVPSHIN 318 (367)
Q Consensus 242 ~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (367)
.++.+.....++.++++......++++++++.++++++.+.|++. |+.+..+ ..+.+++++++++.+
T Consensus 267 ------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~----~~g~~~~~~~~~~~~ 336 (397)
T 2zyj_A 267 ------DLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRP----KGGMFVWMELPKGLS 336 (397)
T ss_dssp ------HSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCC----SBSSEEEEECSTTCC
T ss_pred ------cCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccC----CccEEEEEEcCCCCC
Confidence 112344444444444443211236778888899999999999985 6777655 345578888876678
Q ss_pred HHHHHHHHHhhCCeEEccCCCCC----CCcEEEEeecCC
Q 017726 319 SSEIVRRAWQRYNLSLGLGLNKV----AGKVFRIGHLGH 353 (367)
Q Consensus 319 ~~~l~~~L~~~~gv~v~~g~~~~----~~~~iRi~~~~~ 353 (367)
..++.+.|.++ ||.+.+|..+. .++++||++...
T Consensus 337 ~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~ 374 (397)
T 2zyj_A 337 AEGLFRRALEE-NVAFVPGGPFFANGGGENTLRLSYATL 374 (397)
T ss_dssp HHHHHHHHHHT-TEEEEESGGGCTTSCCTTEEEEECSSS
T ss_pred HHHHHHHHHHC-CCEEechHHhcCCCCCCCeEEEEcCCC
Confidence 88999999876 99999875432 357899997653
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-31 Score=248.38 Aligned_cols=302 Identities=14% Similarity=0.069 Sum_probs=230.7
Q ss_pred cHHHHHHHHHHHHHHHhcCCC-CceE--EecCChhHHHHHHHHccCCCC--------CeEEEEeCCcchHHHHHHHHHhC
Q 017726 39 AVPALTKTLLEDIKKIFKTTS-GTPF--LIPTTGTGAWESALTNTLSPG--------DRIISFLIGQFSLLWIDQQQRLN 107 (367)
Q Consensus 39 ~~~~~~~~~~~~la~~~~~~~-~~~v--~~~~ggt~al~~~~~~~~~~g--------d~vl~~~~~~~~~~~~~~~~~~g 107 (367)
.......++++++++++|.+. ++.+ ++++||++|+..++.++..+| |+|+++.+.|++. ...++..|
T Consensus 136 ~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~--~~~~~~~G 213 (514)
T 3mad_A 136 STAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAF--DKAAQYFG 213 (514)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHH--HHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHH--HHHHHHcC
Confidence 345666778899999999872 1235 999999999999998877665 8999999988874 36677889
Q ss_pred CceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCce----
Q 017726 108 FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI---- 183 (367)
Q Consensus 108 ~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~---- 183 (367)
++++.++.+.++.+|+++++++++ +++++|++++++||+|.+.|+++|.++|++ +|+++|+|++|+.+..
T Consensus 214 ~~v~~v~~~~~~~~d~~~Le~~i~----~~~~~v~~~~~~nptG~~~~l~~i~~la~~--~~i~livDea~~~~~~~~~~ 287 (514)
T 3mad_A 214 IKLVRTPLDADYRADVAAMREAIT----PNTVVVAGSAPGYPHGVVDPIPEIAALAAE--HGIGCHVDACLGGFILPWAE 287 (514)
T ss_dssp CEEEEECBCTTSCBCHHHHHHHCC----TTEEEEEEETTCTTTCCCCCHHHHHHHHHH--HTCEEEEECTTTTTTHHHHH
T ss_pred CeeEEeeeCCCCCCCHHHHHHHhc----cCCEEEEEeCCCCCCccccCHHHHHHHHHH--hCCeEEEecccccccchhHH
Confidence 999999999888999999999998 467999999999999999999999999999 9999999999875533
Q ss_pred -------eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHH
Q 017726 184 -------DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLL 256 (367)
Q Consensus 184 -------~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (367)
+++....++|++++|+||++.++.|+|+++++++...+........+... ... .....++.+...+
T Consensus 288 ~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~gs~~~~~~ 360 (514)
T 3mad_A 288 RLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGG------LYF-SPTFAGSRPGALS 360 (514)
T ss_dssp HTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTC------SEE-ESSSCSSCCHHHH
T ss_pred hcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCC------ccc-CCccCCCCchHHH
Confidence 34445568899999999998888889999998887655332111000000 000 0011335666667
Q ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEc
Q 017726 257 YGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLG 335 (367)
Q Consensus 257 ~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~ 335 (367)
+++.+++..+...+++++.++..++++++.+.|++. |+++..+. . .++++.. ++.+..++.++|.++ ||.+
T Consensus 361 ~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~-~~~~~~~-~~~~~~~l~~~L~~~-Gi~v- 432 (514)
T 3mad_A 361 ATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP----L-WVIAVAS-DELNIYQVMEEMAGR-GWRL- 432 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC----S-SEEEEEC-SSSCHHHHHHHHHTT-TCBC-
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC----e-EEEEEeC-CCCCHHHHHHHHHhc-CCEe-
Confidence 888999999888888999999999999999999997 88877652 2 3677776 567888999999766 9887
Q ss_pred cCCCCCCCcEEEEeecCC---CCHHHHHHhhhh
Q 017726 336 LGLNKVAGKVFRIGHLGH---LNEVMFNFQLLF 365 (367)
Q Consensus 336 ~g~~~~~~~~iRi~~~~~---~~~~~~~~~~l~ 365 (367)
++... +..+|+++... .++.+...+.|+
T Consensus 433 ~g~~~--~~~~Ri~~~~~~~~~e~i~~~l~~L~ 463 (514)
T 3mad_A 433 NGLHR--PPAFHVALTLRHTEPGVVDRFLADLQ 463 (514)
T ss_dssp EEETT--TTEEEEECCGGGGSTTHHHHHHHHHH
T ss_pred ccCCC--CCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 44332 46799987532 345555555544
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.7e-30 Score=237.81 Aligned_cols=303 Identities=11% Similarity=0.058 Sum_probs=220.0
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
+.++.+.+++.+.... ...|... ..++++.+++++ |.+ .++++++|+|+++|+..++.+++.+||+|++..|
T Consensus 44 ~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~~~gd~vl~~~p 121 (399)
T 1c7n_A 44 KNPPELIEGLKKYLDETVLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITP 121 (399)
T ss_dssp CCCHHHHHHHHHHHHHCCCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSS
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 4577888888775321 1112111 456777777664 632 2346999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCC-CC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhc
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESD-WG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEY 166 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~-~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~ 166 (367)
.|++.. ..++..|.+++.++.+ .+ +.+|++++++++++ +++++|++++|+||||.++| +++|.++|++
T Consensus 122 ~~~~~~--~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~- 195 (399)
T 1c7n_A 122 VYYPFF--MAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD---KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLK- 195 (399)
T ss_dssp CCTHHH--HHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC---TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHH-
T ss_pred CcHhHH--HHHHHcCCEEEecccccCCCCEEEcHHHHHHHhcc---CCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHH-
Confidence 888753 4567789999998875 32 35899999999974 36799999999999999998 8899999999
Q ss_pred CCCcEEEEeeeeccCce----eecccc-----ccceEEEecCCCcccCCCc--ceeeeeC-HHHHHHhccCCCCceeech
Q 017726 167 RHPALFLVDGVSSICAI----DFRMDE-----WGIDVALTGSQKALSLPTG--MGIVCAS-PKALEASKTAKSVRVFFDW 234 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~----~~~~~~-----~~~d~~~~s~~K~~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~ 234 (367)
+|+++|+|++|+.+.. ..++.. .+.++++.|++|+++ ++| +|+++++ +++++++....
T Consensus 196 -~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~l~~~~-------- 265 (399)
T 1c7n_A 196 -SDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFN-IAGMGMSNIIIKNPDIRERFTKSR-------- 265 (399)
T ss_dssp -SSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHT-CGGGCCEEEECCCHHHHHHHHHHH--------
T ss_pred -cCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhcc-ccchheEEEEECCHHHHHHHHHHH--------
Confidence 9999999999986432 122221 246789999999995 444 6999986 56777765321
Q ss_pred HHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-c-CCccccCCCccCCCceEEEE
Q 017726 235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQKEEWFSDTVTAVI 312 (367)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~ 312 (367)
...+ ..+++...+.++.+++... +..++++++++.++++++.+.|++ + |+.+..+ .++.++++.
T Consensus 266 -------~~~~--~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~~ 331 (399)
T 1c7n_A 266 -------DATS--GMPFTTLGYKACEICYKEC-GKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLI----EGTYLQWID 331 (399)
T ss_dssp -------HHTT--CCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCC----SBSSEEEEE
T ss_pred -------hhcc--cCCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecC----CceEEEEEE
Confidence 0011 1235665555555566542 223778888999999999999998 6 8877665 355566788
Q ss_pred cCC-CCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCC
Q 017726 313 VPS-HINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGH 353 (367)
Q Consensus 313 ~~~-~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~ 353 (367)
++. +.+..++.+.|.+++||.+.+|..+ ..++++||++...
T Consensus 332 ~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~ 375 (399)
T 1c7n_A 332 FRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAP 375 (399)
T ss_dssp CGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSC
T ss_pred cccCCCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEeccC
Confidence 854 3678899999976679999987543 2457899998665
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-30 Score=242.28 Aligned_cols=317 Identities=11% Similarity=0.017 Sum_probs=233.0
Q ss_pred CChHHHHHHHccCCCC---CCCCcHHHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCc
Q 017726 19 HIPDQVIRAMNRNNED---YRSPAVPALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQ 94 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~ 94 (367)
+.++.+.+++.+.... .......+..+++++++++.++.+ .+++|++++|+++|+..++.+++.+||+|++..+.|
T Consensus 74 ~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y 153 (421)
T 3l8a_A 74 LPVPEIKEAIINYGREHIFGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVY 153 (421)
T ss_dssp CCCHHHHHHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTEEEEEEEESCC
T ss_pred CCCHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCc
Confidence 4678888888775421 112223567778888888888843 335699999999999999999999999999999988
Q ss_pred chHHHHHHHHHhCCceEEEeCC-CC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc---cHHHHHHHHHhcCC
Q 017726 95 FSLLWIDQQQRLNFNVDVVESD-WG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN---NLSKVRKLLDEYRH 168 (367)
Q Consensus 95 ~~~~~~~~~~~~g~~~~~v~~~-~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~---~~~~i~~~~~~~~~ 168 (367)
++.. ..++..|.+++.++.+ .+ +.+|++++++++++ +++++|++++|+||+|.++ ++++|.++|++ +
T Consensus 154 ~~~~--~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~---~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~--~ 226 (421)
T 3l8a_A 154 YPFA--RTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIID---NNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKK--H 226 (421)
T ss_dssp HHHH--HHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHH---TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHH--H
T ss_pred HHHH--HHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhc---cCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHH--c
Confidence 8743 4567789999999875 23 36899999999984 3679999999999999885 58889999999 9
Q ss_pred CcEEEEeeeeccCcee----ecc-----ccccceEEEecCCCccc-CCCcceeeeeC-HHHHHHhccCCCCceeechHHH
Q 017726 169 PALFLVDGVSSICAID----FRM-----DEWGIDVALTGSQKALS-LPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDY 237 (367)
Q Consensus 169 ~~~vi~D~~~~~~~~~----~~~-----~~~~~d~~~~s~~K~~~-g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 237 (367)
|+++|+|++|+.+... .++ +..+.++++.|++|+++ ++.++|+++++ +++.+.+....
T Consensus 227 ~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~----------- 295 (421)
T 3l8a_A 227 GVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQ----------- 295 (421)
T ss_dssp TCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHH-----------
T ss_pred CCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHH-----------
Confidence 9999999998754321 111 11356799999999995 22346999988 88877665321
Q ss_pred HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCC-
Q 017726 238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS- 315 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~- 315 (367)
...+ .++++...+.++.+++....++ +++++++..++++++.+.|++. ++.+..+ .++.+.++.++.
T Consensus 296 ----~~~~--~~~~n~~~~~a~~aal~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~----~~~~~~~v~~~~~ 364 (421)
T 3l8a_A 296 ----LANN--QHEVPTVGMIATQAAFQYGKPW-LEELKTVIEGNIKLVIKELEAKTKIKVMEP----EGTYLVWLDFSAY 364 (421)
T ss_dssp ----HHTT--CSCCCHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHCSCEEECC----SBSSEEEEECGGG
T ss_pred ----Hhcc--cCCCCHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHHHHHHhCCCceEeCC----CeeEEEEEecccc
Confidence 0111 3357777777777777653333 7888899999999999999996 8888776 455566688754
Q ss_pred CCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 316 HINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 316 ~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
+.+..++.+.|.+++||.+.+|..+ ...+++||++....++.+...+.|
T Consensus 365 ~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~i~~~l~~l 415 (421)
T 3l8a_A 365 AIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVATPKNTVQEALSRI 415 (421)
T ss_dssp TCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecCCHHHHHHHHHHH
Confidence 4678899999987779999987543 345789999774333333333333
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.3e-31 Score=251.90 Aligned_cols=303 Identities=11% Similarity=0.048 Sum_probs=230.9
Q ss_pred cHHHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHHccCC-----CC---CeEEEEeCCcchHHHHHHHHHhCCc
Q 017726 39 AVPALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNTLS-----PG---DRIISFLIGQFSLLWIDQQQRLNFN 109 (367)
Q Consensus 39 ~~~~~~~~~~~~la~~~~~~-~~~~v~~~~ggt~al~~~~~~~~~-----~g---d~vl~~~~~~~~~~~~~~~~~~g~~ 109 (367)
.......++++++++++|.+ ..+++++++||++|+..++.++.. +| +.|+++.+.|++. ...++..|++
T Consensus 104 ~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~--~~~~~~~G~~ 181 (497)
T 3mc6_A 104 AVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGF--DKAAYYFGMK 181 (497)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHH--HHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHH--HHHHHHcCCe
Confidence 34567778999999999998 445699999999999999987643 45 8999999987774 3667888999
Q ss_pred eEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCce-----
Q 017726 110 VDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI----- 183 (367)
Q Consensus 110 ~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~----- 183 (367)
++.++.+. ++.+|+++++++++ +++++|++++|+||+|.+.|+++|.++|++ +|+++++|++|+.+..
T Consensus 182 ~~~v~~~~~~~~~d~~~l~~~i~----~~~~~v~~~~p~nptG~~~~l~~i~~la~~--~g~~livD~a~~~~~~~f~~~ 255 (497)
T 3mc6_A 182 LRHVELDPTTYQVDLGKVKKFIN----KNTVLLVGSAPNFPHGIADDIEGLGKIAQK--YKLPLHVDSCLGSFIVSFMEK 255 (497)
T ss_dssp EEEECBCTTTCSBCTTTTGGGCC----SSEEEEEEETTCTTTCCCCSCTTTTTHHHH--TTCCEEEETTTTHHHHGGGTT
T ss_pred EEEEecCcccCcCCHHHHHHHHh----hCCEEEEEECCCCCCCcCCCHHHHHHHHHH--hCCEEEEECcchhhhhhhhhh
Confidence 99999987 77899999999997 467999999999999999999999999999 9999999999874322
Q ss_pred -------eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHH
Q 017726 184 -------DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLL 256 (367)
Q Consensus 184 -------~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (367)
+++....++|+++.++||++.++.|+|+++++++.+.+........+... .+ ......++.+...+
T Consensus 256 ~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~g~~~~~~~ 328 (497)
T 3mc6_A 256 AGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGG------LY-GSPTLAGSRPGAIV 328 (497)
T ss_dssp TTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTS------CB-CCSSSCSSCBHHHH
T ss_pred hcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCC------Cc-CCcCcccCCcchhH
Confidence 34555568999999999998889999999998887665532211110000 00 00011234555667
Q ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-c-CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEE
Q 017726 257 YGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSL 334 (367)
Q Consensus 257 ~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v 334 (367)
+++++++..+...|+++..++..++++++.+.|++ + |++++.+ ....+++|.. .+.+..++.+.|.++ ||.+
T Consensus 329 ~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~----~~~~~v~~~~-~~~~~~~l~~~L~~~-Gi~v 402 (497)
T 3mc6_A 329 VGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGN----PRYSVISFSS-KTLNIHELSDRLSKK-GWHF 402 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSC----CCSSEEEEEC-TTTTHHHHHHHHHTT-TCBC
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC----CCeeEEEEeC-CCCCHHHHHHHHHhC-CEEE
Confidence 88999999998888999999999999999999999 4 8888764 2344677776 467889999999765 9988
Q ss_pred ccCCCCCCCcEEEEeecC-CCCHHHHHHhhhh
Q 017726 335 GLGLNKVAGKVFRIGHLG-HLNEVMFNFQLLF 365 (367)
Q Consensus 335 ~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 365 (367)
..+..+ ..+|+++.. ..++.+.+.+.|.
T Consensus 403 ~~~~~~---~~~ri~~~~~t~e~i~~~~~~L~ 431 (497)
T 3mc6_A 403 NALQKP---VALHMAFTRLSAHVVDEICDILR 431 (497)
T ss_dssp EECCSS---CCEEEECCTTTTCTHHHHHHHHH
T ss_pred ecCCCC---CeEEEEEeCCCHHHHHHHHHHHH
Confidence 755332 357887652 4445555555554
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-31 Score=243.21 Aligned_cols=316 Identities=12% Similarity=0.004 Sum_probs=221.4
Q ss_pred CcccccC--CCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHH----hcCC-CCceEEecCChhHHHHHHHHccC
Q 017726 9 KNHLFVP--GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKI----FKTT-SGTPFLIPTTGTGAWESALTNTL 81 (367)
Q Consensus 9 ~~~~~~~--~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~----~~~~-~~~~v~~~~ggt~al~~~~~~~~ 81 (367)
+.+.+.. .+.+.|+.+.+++.+.......|.......++|+.++++ +|.+ .++++++|+|+++++..++.+++
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~ 103 (376)
T 3ezs_A 24 RGLDLGIGEPQFETPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVL 103 (376)
T ss_dssp CCCBCSSCCCCSCCCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHT
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHc
Confidence 3444443 234567899999988653222222112233455555555 4873 34569999999999999999999
Q ss_pred CC--CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---H
Q 017726 82 SP--GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---L 156 (367)
Q Consensus 82 ~~--gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~ 156 (367)
.+ ||+|++..|.|++.. ..++..|.+++.++.+.++.+++ ++++++.+ ++++|++++|+||||.++| +
T Consensus 104 ~~~~gd~vl~~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~-~l~~~~~~----~~~~v~~~~p~nptG~~~~~~~l 176 (376)
T 3ezs_A 104 FDYQNPTIAYPNPFYQIYE--GAAKFIKAKSLLMPLTKENDFTP-SLNEKELQ----EVDLVILNSPNNPTGRTLSLEEL 176 (376)
T ss_dssp TTCSSCEEEEEESCCTHHH--HHHHHTTCEEEEEECCGGGTSCC-CCCHHHHH----HCSEEEECSSCTTTCCCCCHHHH
T ss_pred CCCCCCEEEEecCCcHhHH--HHHHHcCCEEEEcccCCCCCcch-hHHhhhcc----CCCEEEEcCCCCCcCCCCCHHHH
Confidence 99 999999999888753 55778899999999887655665 67777763 5699999999999999987 5
Q ss_pred HHHHHHHHhcCCCcEEEEeeeeccCcee---eccc---------cccceEEEecCCCccc-CCCcceeeeeCHHHHHHhc
Q 017726 157 SKVRKLLDEYRHPALFLVDGVSSICAID---FRMD---------EWGIDVALTGSQKALS-LPTGMGIVCASPKALEASK 223 (367)
Q Consensus 157 ~~i~~~~~~~~~~~~vi~D~~~~~~~~~---~~~~---------~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~ 223 (367)
++|.++|++ +|+++|+|++|+.+... .+.. ..+.++++.|+||+++ ++.++|+++.++++++.+.
T Consensus 177 ~~i~~~~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~ 254 (376)
T 3ezs_A 177 ISWVKLALK--HDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYK 254 (376)
T ss_dssp HHHHHHHHH--HTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEECHHHHHHHH
T ss_pred HHHHHHHHH--cCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEeeCHHHHHHHH
Confidence 567777888 99999999999864331 1111 3467899999999993 2334799999999988776
Q ss_pred cCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCcc
Q 017726 224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEW 303 (367)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 303 (367)
.... . ..++++...+.++.++++. ...+++.++++.++++++.+.|+ ++. .+
T Consensus 255 ~~~~----------------~--~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~--~~~--~~---- 306 (376)
T 3ezs_A 255 AFRA----------------Y--LGYTSANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFK--NTL--IY---- 306 (376)
T ss_dssp HHHT----------------T--TCCCCCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHST--TCC--CC----
T ss_pred HHHh----------------h--hcCCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhc--CCC--CC----
Confidence 4211 1 1335666555555555553 12267788888899999988887 544 32
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC----CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 304 FSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK----VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~----~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
..+.++++.++ +..++.+.|.+++||.+.+|..+ ..++++||++....++.+...+.|
T Consensus 307 ~~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l 368 (376)
T 3ezs_A 307 PYSFYVYLPVQ---NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEII 368 (376)
T ss_dssp SBSSEEEEECS---CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHH
T ss_pred CcceEEEEECC---CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcCCHHHHHHHHHHH
Confidence 34557788885 67899999987569999987543 245789999765333344444443
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.6e-31 Score=242.14 Aligned_cols=314 Identities=13% Similarity=0.045 Sum_probs=221.3
Q ss_pred CCCChHHHHHHHccCCCCCCCCc----HHHHHHHHHHHHHHHhcCC---CCceEEecCChhHHHHHHHHccCCCC-----
Q 017726 17 PVHIPDQVIRAMNRNNEDYRSPA----VPALTKTLLEDIKKIFKTT---SGTPFLIPTTGTGAWESALTNTLSPG----- 84 (367)
Q Consensus 17 p~~~~~~v~~a~~~~~~~~~~~~----~~~~~~~~~~~la~~~~~~---~~~~v~~~~ggt~al~~~~~~~~~~g----- 84 (367)
+.+.++.+.+++.+.......|. ..+..+++.+.+.+.+|.+ +++++++|+|+++++..++.+++.+|
T Consensus 41 ~~~~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~ 120 (396)
T 3jtx_A 41 KHPTPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIK 120 (396)
T ss_dssp CSCCCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHCCC---CCC
T ss_pred CCCCCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHhCCCCccCC
Confidence 34567889999988653322222 2344444444444445753 43269999999999999999999896
Q ss_pred CeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHH---HH
Q 017726 85 DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSK---VR 160 (367)
Q Consensus 85 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~---i~ 160 (367)
|+|++..|.|++.. ..++..|.+++.++.+.+ +.+|++++++++++ ++++|++++|+||||.++|.++ |.
T Consensus 121 d~vl~~~p~~~~~~--~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~----~~~~v~l~~p~nptG~~~~~~~l~~i~ 194 (396)
T 3jtx_A 121 PAIVSPNPFYQIYE--GATLLGGGEIHFANCPAPSFNPDWRSISEEVWK----RTKLVFVCSPNNPSGSVLDLDGWKEVF 194 (396)
T ss_dssp CEEEEEESCCHHHH--HHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHH----TEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred CEEEEcCCCcHhHH--HHHHHcCCEEEEeecCCCCCccCHHHHHHhhcc----CcEEEEEECCCCCCCCcCCHHHHHHHH
Confidence 79999999877643 457789999999998543 46799999999984 6799999999999999997655 88
Q ss_pred HHHHhcCCCcEEEEeeeeccCcee----eccc--------cccceEEEecCCCcccC-CCcceeeeeCHHHHHHhccCCC
Q 017726 161 KLLDEYRHPALFLVDGVSSICAID----FRMD--------EWGIDVALTGSQKALSL-PTGMGIVCASPKALEASKTAKS 227 (367)
Q Consensus 161 ~~~~~~~~~~~vi~D~~~~~~~~~----~~~~--------~~~~d~~~~s~~K~~~g-~~g~g~~~~~~~~~~~~~~~~~ 227 (367)
++|++ +|+++|+|++|+.+... .... ..+.++++.|++|.++. ..++|+++.++++++.+....
T Consensus 195 ~~~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~- 271 (396)
T 3jtx_A 195 DLQDK--YGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYR- 271 (396)
T ss_dssp HHHHH--HCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHHHH-
T ss_pred HHHHH--cCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHHHH-
Confidence 88999 99999999999864321 1110 24678999999997632 234799999999988776321
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCc
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDT 307 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 307 (367)
.. ..++++...+.++.+++.. +..+++.++++.++++.+.+.|++. +.+..+ .++.
T Consensus 272 ------------~~-----~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~----~~~~ 327 (396)
T 3jtx_A 272 ------------TY-----HGSAMSIPVQRASIAAWDD--EQHVIDNRRLYQEKFERVIPILQQV-FDVKLP----DASF 327 (396)
T ss_dssp ------------HH-----HTCCCCHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHTTT-SCCCCC----SSSS
T ss_pred ------------hh-----cccCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhc-CCccCC----CeeE
Confidence 00 1234666555555555543 2237788888999999999998876 344444 3566
Q ss_pred eEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC--------CCcEEEEeecCCCCHHHHHHhhh
Q 017726 308 VTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV--------AGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 308 ~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~--------~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
++++.++. .+..++++.|.+++||.+.+|..+. ..+++||++....++.+...+.|
T Consensus 328 ~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l 391 (396)
T 3jtx_A 328 YIWLKVPD-GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDI 391 (396)
T ss_dssp EEEEECTT-SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCSCHHHHHHHHHHH
T ss_pred EEEEECCC-CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcCCHHHHHHHHHHH
Confidence 78888854 5788999999777799999885432 34789999766333333333333
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.98 E-value=7.5e-31 Score=238.30 Aligned_cols=311 Identities=11% Similarity=0.086 Sum_probs=229.3
Q ss_pred CcccccCC--CCCChHHHHHHHccCCCCC-CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCC
Q 017726 9 KNHLFVPG--PVHIPDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGD 85 (367)
Q Consensus 9 ~~~~~~~~--p~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd 85 (367)
+.+.+..| |.++++.+.+++.+..... .++. ....++++.++++++.+++ ++++++|+++++..++.++ |
T Consensus 27 ~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~~--~~~~~l~~~la~~~~~~~~-~i~~~~g~t~al~~~~~~~----d 99 (361)
T 3ftb_A 27 ELLDYSSNINPLGIPKSFLNNIDEGIKNLGVYPD--VNYRRLNKSIENYLKLKDI-GIVLGNGASEIIELSISLF----E 99 (361)
T ss_dssp -CEETTCCCCTTCSCHHHHTTHHHHHHGGGSCCC--TTCHHHHHHHHHHHTCCSC-EEEEESSHHHHHHHHHTTC----S
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCC--ccHHHHHHHHHHHhCCCcc-eEEEcCCHHHHHHHHHHHc----C
Confidence 34455443 4456788888887643321 1222 3457999999999998764 5999999999999999887 8
Q ss_pred eEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHH
Q 017726 86 RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKL 162 (367)
Q Consensus 86 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~ 162 (367)
+|++..+.|++.. ..++..|.+++.++.+.++.+++++++++++ + +++|++++|+||||.++| +++|.++
T Consensus 100 ~vi~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~----~-~~~v~i~~p~nptG~~~~~~~l~~i~~~ 172 (361)
T 3ftb_A 100 KILIIVPSYAEYE--INAKKHGVSVVFSYLDENMCIDYEDIISKID----D-VDSVIIGNPNNPNGGLINKEKFIHVLKL 172 (361)
T ss_dssp EEEEEESCCTHHH--HHHHHTTCEEEEEECCTTSCCCHHHHHHHTT----T-CSEEEEETTBTTTTBCCCHHHHHHHHHH
T ss_pred cEEEecCChHHHH--HHHHHcCCeEEEeecCcccCCCHHHHHHhcc----C-CCEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence 9999999887743 5577789999999998887889999999997 3 699999999999999987 5567777
Q ss_pred HHhcCCCcEEEEeeeeccCcee--e---c-cccccceEEEecCCCccc-CCCcceeee-eCHHHHHHhccCCCCceeech
Q 017726 163 LDEYRHPALFLVDGVSSICAID--F---R-MDEWGIDVALTGSQKALS-LPTGMGIVC-ASPKALEASKTAKSVRVFFDW 234 (367)
Q Consensus 163 ~~~~~~~~~vi~D~~~~~~~~~--~---~-~~~~~~d~~~~s~~K~~~-g~~g~g~~~-~~~~~~~~~~~~~~~~~~~~~ 234 (367)
|++ +|+++|+|++|+.+... . . ....+.++++.|++|.++ ++.++|+++ .++++++++.....
T Consensus 173 ~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~------- 243 (361)
T 3ftb_A 173 AEE--KKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQN------- 243 (361)
T ss_dssp HHH--HTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSC-------
T ss_pred hhh--cCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCC-------
Confidence 778 99999999998754432 1 1 112245688899999985 223368888 88888887764311
Q ss_pred HHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCc-cccCCCccCCCceEEEE
Q 017726 235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLK-NCTQKEEWFSDTVTAVI 312 (367)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~~~~~~~~ 312 (367)
.++++...+.++.++++. ...+++++++..++++++.+.|+++ ++. +..+ .+.+++++
T Consensus 244 -------------~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-----~~~~~~~~ 303 (361)
T 3ftb_A 244 -------------PWNINCFAEMAAINCLKD--TNYIEESLLWIKKERKRFIEELNKIGFIKRVFSP-----HANFVLCR 303 (361)
T ss_dssp -------------TTCSCHHHHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECC-----SSSEEEEE
T ss_pred -------------CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCC-----CCeEEEEE
Confidence 335676666666666653 2337788899999999999999998 777 6554 23467788
Q ss_pred cCCCCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 313 VPSHINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 313 ~~~~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
++. .+..++.+.|.++ ||.+.+|..+ ..++++||++. ..++.+.+.+.|+
T Consensus 304 ~~~-~~~~~l~~~l~~~-gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~ 355 (361)
T 3ftb_A 304 LEN-ISGEKLYDSLLKE-DIVIRRCCNFIGLDDSFVRFAIK-DEKKNTKFLRALK 355 (361)
T ss_dssp ESS-SCHHHHHHHHHTT-TEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHH
T ss_pred cCC-CCHHHHHHHHHHC-CeEEeeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHH
Confidence 854 6788999999866 9999988543 34678999964 4344455555554
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.2e-31 Score=249.27 Aligned_cols=327 Identities=13% Similarity=0.077 Sum_probs=230.4
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCCC--------CC----cHHHHHHHHHHHHHHHhcCCCCc---eEEecCChhHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDYR--------SP----AVPALTKTLLEDIKKIFKTTSGT---PFLIPTTGTGAW 73 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~--------~~----~~~~~~~~~~~~la~~~~~~~~~---~v~~~~ggt~al 73 (367)
+.+.+.++..++++.+++++.+...+.. .| ......+.+++++++++|++.++ +|++ ++|++++
T Consensus 45 ~~i~L~a~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~-~sGs~an 123 (483)
T 1rv3_A 45 VGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQP-YSGSPAN 123 (483)
T ss_dssp SSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCC-SSHHHHH
T ss_pred cCeEEEcCCCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEE-CCcHHHH
Confidence 3567888999999999999998654322 11 12455667889999999998532 2555 4555888
Q ss_pred HHHHHccCCCCCeEEEEeCCcchHHHH------HHHHHhC--CceEEEeCC-CCCCCCHHHHHHHHhccCCCCccEEEEE
Q 017726 74 ESALTNTLSPGDRIISFLIGQFSLLWI------DQQQRLN--FNVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIV 144 (367)
Q Consensus 74 ~~~~~~~~~~gd~vl~~~~~~~~~~~~------~~~~~~g--~~~~~v~~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~ 144 (367)
..++.++++|||+|+++++.|.++... ..++..| ++++.++.+ .++.+|++++++++++ ++||+|++
T Consensus 124 ~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~---~~tklIi~- 199 (483)
T 1rv3_A 124 FAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARL---FHPKLIIA- 199 (483)
T ss_dssp HHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH---HCCSEEEE-
T ss_pred HHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhh---cCCcEEEE-
Confidence 888888899999999999877765310 0112233 344444445 4678999999999984 36799998
Q ss_pred ecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccc---cceEEEecCCCcccCCCcceeeeeCHHHHHH
Q 017726 145 HNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW---GIDVALTGSQKALSLPTGMGIVCASPKALEA 221 (367)
Q Consensus 145 ~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~---~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~ 221 (367)
+++|++ .+.|+++|.++|++ +|+++++|++|..+....+.... ++|++++|+||+|.|++| |++++++++..
T Consensus 200 ~~sn~~-~~~dl~~i~~ia~~--~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~Gprg-G~i~~~~~~~~- 274 (483)
T 1rv3_A 200 GTSCYS-RNLDYGRLRKIADE--NGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRA-GMIFYRRGVRS- 274 (483)
T ss_dssp CCSSCC-SCCCHHHHHHHHHH--TTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCSC-EEEEEECSBCC-
T ss_pred eCCcCC-CcCCHHHHHHHHHH--cCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccCCCCCc-eEEEEcchhhh-
Confidence 888888 88999999999999 99999999999865543333222 689999999999998988 99999876421
Q ss_pred hccCCCC-ceeechHHHHHH-hhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccC
Q 017726 222 SKTAKSV-RVFFDWKDYIKF-YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQ 299 (367)
Q Consensus 222 ~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 299 (367)
+. ...+ ....++...... ...+. .++++...++++.++++.+.+.+++++.++..++++++.+.|+++|+++..+
T Consensus 275 ~~-~~~g~~~~y~~~~~~~~~~~~~~--~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 351 (483)
T 1rv3_A 275 VD-PKTGKEILYNLESLINSAVFPGL--QGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTG 351 (483)
T ss_dssp --------CCBCCHHHHHHHHHTTTT--CCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGG
T ss_pred hc-cccCcchhhHHHHHhhhhcCCcc--cCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCCEeccC
Confidence 11 0000 000011111111 11111 3457888888899999887766688899999999999999999999888775
Q ss_pred CCccCCCceEEEEcC-CCCCHHHHHHHHHhhCCeEEc----cCCC-CCCCcEEEEeecC
Q 017726 300 KEEWFSDTVTAVIVP-SHINSSEIVRRAWQRYNLSLG----LGLN-KVAGKVFRIGHLG 352 (367)
Q Consensus 300 ~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~gv~v~----~g~~-~~~~~~iRi~~~~ 352 (367)
.. .+.++++.++ .+.+..++.+.|. +.||.+. +|.. +...+.+|||+..
T Consensus 352 ~~---~~~~~~v~~~~~g~~~~~~~~~L~-~~gI~v~~~~~pg~~~~~~~~~iRis~~~ 406 (483)
T 1rv3_A 352 GS---DNHLILVDLRSKGTDGGRAEKVLE-ACSIACNKNTCPGDKSALRPSGLRLGTPA 406 (483)
T ss_dssp SC---SSSEEEEEGGGGTCCHHHHHHHHH-HTTEECEEECCSSCSCTTSCCEEEEECHH
T ss_pred CC---CCceEEEeccCCCCCHHHHHHHHH-hCCcEEecCCCCCCCcCCCCceEEeecCC
Confidence 21 2345666663 2567888888775 5699998 7653 2345689999865
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-30 Score=242.88 Aligned_cols=322 Identities=9% Similarity=-0.020 Sum_probs=230.8
Q ss_pred CChHHHHHHHccCCCC---C--CCCcHHHHHHHHHHHHHHHhcCCCCc----eEEecCChhHHHHHHHHccCC-------
Q 017726 19 HIPDQVIRAMNRNNED---Y--RSPAVPALTKTLLEDIKKIFKTTSGT----PFLIPTTGTGAWESALTNTLS------- 82 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~---~--~~~~~~~~~~~~~~~la~~~~~~~~~----~v~~~~ggt~al~~~~~~~~~------- 82 (367)
+.++.+.+++.+.... + .++...+...++++++++++|.+... .+++++|||+|+..++.++..
T Consensus 53 ~~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~ 132 (452)
T 2dgk_A 53 WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRME 132 (452)
T ss_dssp CCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888765432 1 13344566788999999999998643 589999999999998876543
Q ss_pred -CC-----CeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc
Q 017726 83 -PG-----DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN 155 (367)
Q Consensus 83 -~g-----d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~ 155 (367)
+| +.|+++. .|++ +...++..|++++.++.++ ++.+|+++++++|+ ++|++|++++|+||||.+.|
T Consensus 133 ~~G~~~~~~~vi~~~-~h~~--~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~----~~t~~v~~~~~~n~tG~~~~ 205 (452)
T 2dgk_A 133 AAGKPTDKPNLVCGP-VQIC--WHKFARYWDVELREIPMRPGQLFMDPKRMIEACD----ENTIGVVPTFGVTYTGNYEF 205 (452)
T ss_dssp HTTCCCSCCEEEESS-CCHH--HHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCC----TTEEEEECBBSCTTTCBBCC
T ss_pred hcCCCCCCcEEEECC-CcHH--HHHHHHHcCceEEEEecCCCCCeECHHHHHHHHh----hCCEEEEEEcCCcCCcccCC
Confidence 44 5888877 5554 4466788999999999886 68899999999998 46799999999999999999
Q ss_pred HHHHHHHHHhc----CCCcEEEEeeeeccCcee-------eccccccceEEEecCCCcccCCCcceeeeeCHH-HH-HHh
Q 017726 156 LSKVRKLLDEY----RHPALFLVDGVSSICAID-------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPK-AL-EAS 222 (367)
Q Consensus 156 ~~~i~~~~~~~----~~~~~vi~D~~~~~~~~~-------~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~-~~-~~~ 222 (367)
+++|.++|+++ .+|+++++|++|+.+..+ .+....++|++++++||++.++.|+|+++++++ .+ +.+
T Consensus 206 l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~ 285 (452)
T 2dgk_A 206 PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQEL 285 (452)
T ss_dssp HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGG
T ss_pred HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHHh
Confidence 99999999982 139999999999876432 233334789999999999988899999999754 32 332
Q ss_pred ccCCCCceeechHHHHHHh-hcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCC
Q 017726 223 KTAKSVRVFFDWKDYIKFY-NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQK 300 (367)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 300 (367)
... ..+... .. ..+ ..++.+....+++++++..+...|++++.++..++++++.+.|+++ ++++..+.
T Consensus 286 ~~~---~~~~~~-----~~~~~~--~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~ 355 (452)
T 2dgk_A 286 VFN---VDYLGG-----QIGTFA--INFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTG 355 (452)
T ss_dssp CEE---ECCTTC-----CEEECC--SCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEEC
T ss_pred ccC---ccccCC-----CCCCcc--cCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCC
Confidence 110 001000 00 000 1223444455778888888888889999999999999999999998 68877542
Q ss_pred CccCCCceEEEEcCCC----CCHHHHHHHHHhhCCeEEccCCCC--C-CCcEEEEeecCCCCHHH
Q 017726 301 EEWFSDTVTAVIVPSH----INSSEIVRRAWQRYNLSLGLGLNK--V-AGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 301 ~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~~gv~v~~g~~~--~-~~~~iRi~~~~~~~~~~ 358 (367)
.......+++|+++.. .+..++.+.|.++ ||.++....+ . ...++|+++....+.+|
T Consensus 356 ~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~ 419 (452)
T 2dgk_A 356 RPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLR-GWQVPAFTLGGEATDIVVMRIMCRRGFEMDF 419 (452)
T ss_dssp CTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHT-TCBCCEEECSTTCTTCEEEEEECCTTCCHHH
T ss_pred CCCCCeEEEEEEecCcccccCCHHHHHHHHHhc-CCeeeeeeCCcccCCeEEEEEEecCCCCHHH
Confidence 1101234777887532 3558899999765 9866532211 1 24579999887766543
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-30 Score=240.01 Aligned_cols=316 Identities=16% Similarity=0.131 Sum_probs=227.2
Q ss_pred ChHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 20 IPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
.++.+.+++.+.... .. |.......++++.+++++ |.+ .++++++|+|+++|+..++.+++.+||+|++.
T Consensus 50 ~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~ 128 (407)
T 2zc0_A 50 PRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITE 128 (407)
T ss_dssp CHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcCCCCEEEEe
Confidence 456777777654221 11 222234567888888887 743 33569999999999999999988999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHh----ccCCCCccEE-EEEecCCCccccccHH---HHHHH
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA----ADTAHTIKAI-CIVHNETATGVTNNLS---KVRKL 162 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~----~~~~~~~~lv-~~~~~~n~tG~~~~~~---~i~~~ 162 (367)
.|.|++.. ..++..|.+++.++.+.++ +|+++++++++ +. +++++| ++++++||||.++|.+ +|.++
T Consensus 129 ~p~~~~~~--~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~--~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~ 203 (407)
T 2zc0_A 129 NPSYINTL--LAFEQLGAKIEGVPVDNDG-MRVDLLEEKIKELKAKG--QKVKLIYTIPTGQNPMGVTMSMERRKALLEI 203 (407)
T ss_dssp ESCCHHHH--HHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTT--CCEEEEEECCSSCTTTCCCCCHHHHHHHHHH
T ss_pred CCChHHHH--HHHHHcCCEEEEcccCCCC-CCHHHHHHHHHhhhccc--CCceEEEECCCCCCCCCcCCCHHHHHHHHHH
Confidence 99887743 5567789999999987654 89999999997 42 267887 5789999999999876 89999
Q ss_pred HHhcCCCcEEEEeeeeccCcee----eccc---cccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechH
Q 017726 163 LDEYRHPALFLVDGVSSICAID----FRMD---EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 163 ~~~~~~~~~vi~D~~~~~~~~~----~~~~---~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (367)
|++ +|+++|+|++|+.+... .++. ..+.++++.|++|++++..++|++++++++++++......
T Consensus 204 ~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~------- 274 (407)
T 2zc0_A 204 ASK--YDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLGTGFRIGWIIAEGEILKKVLMQKQP------- 274 (407)
T ss_dssp HHH--HTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTCTTSCCEEEECCHHHHHHHHHHHTT-------
T ss_pred HHH--cCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccCCCcceEEEecCHHHHHHHHHHHHh-------
Confidence 999 99999999999865431 1121 1245688999999996222479999999988877642110
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHH-HH-hChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCCceEEE
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLI-FE-EGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAV 311 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~-~~-~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~ 311 (367)
. .+..+...+.++.++++.. .+ ..+++++++++++++++.+.|++. ++.+..+ ..+.++++
T Consensus 275 --------~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~ 339 (407)
T 2zc0_A 275 --------I---DFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKP----IAGMFVMF 339 (407)
T ss_dssp --------T---TSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCC----SBSSEEEE
T ss_pred --------h---cCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecC----CCcEEEEE
Confidence 1 1223444445555555542 12 347778888999999999999884 6766554 34557888
Q ss_pred EcCCCCCHHHHHHHHHhhCCeEEccCCCCC----CCcEEEEeecCC-CCHHHHHHhhhh
Q 017726 312 IVPSHINSSEIVRRAWQRYNLSLGLGLNKV----AGKVFRIGHLGH-LNEVMFNFQLLF 365 (367)
Q Consensus 312 ~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~----~~~~iRi~~~~~-~~~~~~~~~~l~ 365 (367)
+++++.+..++.+.|.+++||.+.+|..+. ...++||++... .++.+...+.|.
T Consensus 340 ~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~ 398 (407)
T 2zc0_A 340 FLPEGADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLA 398 (407)
T ss_dssp ECSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHHHHHHH
Confidence 887677888999999877799999885432 346899997654 455555555544
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=8.7e-32 Score=249.65 Aligned_cols=316 Identities=13% Similarity=0.053 Sum_probs=223.3
Q ss_pred CChHHHHHHHccCCCCC---CCCcHHHHHHHHHHHHHHHh----cCC--CCceEEecCChhHHHHHHHHccCCCCCeEEE
Q 017726 19 HIPDQVIRAMNRNNEDY---RSPAVPALTKTLLEDIKKIF----KTT--SGTPFLIPTTGTGAWESALTNTLSPGDRIIS 89 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~---~~~~~~~~~~~~~~~la~~~----~~~--~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~ 89 (367)
++++.+.+++.+..... ..|.......++++.+++++ |.+ +.+++++++|+++++..++.+++.+||+|++
T Consensus 41 ~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~ 120 (422)
T 3fvs_A 41 PPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVII 120 (422)
T ss_dssp CCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHcCCCCEEEE
Confidence 46788888887643221 12221122335555555555 433 3246999999999999999999999999999
Q ss_pred EeCCcchHHHHHHHHHhCCceEEEeCCC------------CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc---
Q 017726 90 FLIGQFSLLWIDQQQRLNFNVDVVESDW------------GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN--- 154 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~------------~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~--- 154 (367)
..|.|++.. ..++..|.+++.++.+. ++.+|+++++++++ +++++|++++|+||||.++
T Consensus 121 ~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~----~~~~~v~~~~p~nptG~~~~~~ 194 (422)
T 3fvs_A 121 IEPFFDCYE--PMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT----SRTKALVLNTPNNPLGKVFSRE 194 (422)
T ss_dssp EESCCTTHH--HHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCC----TTEEEEEEESSCTTTCCCCCHH
T ss_pred cCCCchhhH--HHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcC----CCceEEEECCCCCCCCcCCCHH
Confidence 999888753 55778899999999875 34689999999987 4679999999999999999
Q ss_pred cHHHHHHHHHhcCCCcEEEEeeeeccCce----eeccc----cccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccC
Q 017726 155 NLSKVRKLLDEYRHPALFLVDGVSSICAI----DFRMD----EWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTA 225 (367)
Q Consensus 155 ~~~~i~~~~~~~~~~~~vi~D~~~~~~~~----~~~~~----~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~ 225 (367)
++++|.++|++ +|+++|+|++|+.+.. ..++. ..+.++++.|++|.++ ...++|++++++++++.+...
T Consensus 195 ~l~~i~~~~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~ 272 (422)
T 3fvs_A 195 ELELVASLCQQ--HDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTV 272 (422)
T ss_dssp HHHHHHHHHHH--HTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHH--cCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceEEEEEeCHHHHHHHHHH
Confidence 58889999999 9999999999976332 11111 1256799999999994 223479999999988777532
Q ss_pred CCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH------HhChHHHHHHHHHHHHHHHHHHHHcCCccccC
Q 017726 226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF------EEGLENVIERHRRLGKATRLAVEAWGLKNCTQ 299 (367)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~------~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 299 (367)
. ... .++.+.....++.+++.... +..++++++++.++++++.+.|+++|+.+..+
T Consensus 273 ~----------------~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 334 (422)
T 3fvs_A 273 H----------------QNS--VFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPIIP 334 (422)
T ss_dssp H----------------HTT--TCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEBC
T ss_pred H----------------hhc--cCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCC
Confidence 1 111 33466655556665665411 12277888999999999999999998887766
Q ss_pred CCccCCCceEEEEcCC---CCC----------HHHHHHHHHhhCCeEEccCCCC-------CCCcEEEEeecCCCCHHHH
Q 017726 300 KEEWFSDTVTAVIVPS---HIN----------SSEIVRRAWQRYNLSLGLGLNK-------VAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 300 ~~~~~~~~~~~~~~~~---~~~----------~~~l~~~L~~~~gv~v~~g~~~-------~~~~~iRi~~~~~~~~~~~ 359 (367)
..+.++++.++. +.+ ..++++.|.+++||.+.+|..+ ...+++||++....++.+.
T Consensus 335 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~ 410 (422)
T 3fvs_A 335 ----QGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQA 410 (422)
T ss_dssp ----SBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHHHH
T ss_pred ----CeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecCCHHHHHH
Confidence 355567777632 111 4588888777779999988653 2357899997664334344
Q ss_pred HHhhh
Q 017726 360 NFQLL 364 (367)
Q Consensus 360 ~~~~l 364 (367)
..+.|
T Consensus 411 ~l~~l 415 (422)
T 3fvs_A 411 MDEKL 415 (422)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=4e-31 Score=244.19 Aligned_cols=297 Identities=16% Similarity=0.133 Sum_probs=217.4
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhcC----C-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKT----T-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~----~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
+.++.+.+++ +.... ...|.......++++.++++++. + .++++++++||++|+..++.+++.+||+|+++.+
T Consensus 56 ~~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~ 134 (409)
T 2gb3_A 56 KTPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEP 134 (409)
T ss_dssp CCCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CCCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 3567788888 64432 11232223345778888887752 2 3356999999999999999998999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcC
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR 167 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~ 167 (367)
.|++.. ..++..|.+++.++.+. ++.+ +++++++++ +++++|++++|+||||.++| +++|.++|++
T Consensus 135 ~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~----~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~-- 205 (409)
T 2gb3_A 135 FYANYN--AFAKIAGVKLIPVTRRMEEGFAI-PQNLESFIN----ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAER-- 205 (409)
T ss_dssp CCTHHH--HHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--
T ss_pred CchhHH--HHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhC----cCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHH--
Confidence 888753 45677899999999875 3334 788888886 46799999999999999975 7889999999
Q ss_pred CCcEEEEeeeeccCcee---ec-ccc-ccceEEEecCCCcccCCCc--ceeeeeCH-HHHHHhccCCCCceeechHHHHH
Q 017726 168 HPALFLVDGVSSICAID---FR-MDE-WGIDVALTGSQKALSLPTG--MGIVCASP-KALEASKTAKSVRVFFDWKDYIK 239 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~---~~-~~~-~~~d~~~~s~~K~~~g~~g--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 239 (367)
+|+++|+|++|+.+... .+ +.. .+.|+++.|+||+++ ++| +|++++++ ++++.+....
T Consensus 206 ~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~l~~~l~~~~------------- 271 (409)
T 2gb3_A 206 HGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFS-ACGARVGCLITRNEELISHAMKLA------------- 271 (409)
T ss_dssp TTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTT-CGGGCCEEEECSCHHHHHHHHHHH-------------
T ss_pred cCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhccC-CccceEEEEEECcHHHHHHHHHHH-------------
Confidence 99999999999865431 12 222 257999999999994 555 79999998 8877765321
Q ss_pred HhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCcc-ccCCCccCCCceEEEEcCCCCC
Q 017726 240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKN-CTQKEEWFSDTVTAVIVPSHIN 318 (367)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~ 318 (367)
... . +++.....++.++++.. +..++++++++.++++++.+.|+++|+.+ ..+ ..+.+++++++ +.+
T Consensus 272 --~~~---~-~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~~~~~~~~~~~-~~~ 339 (409)
T 2gb3_A 272 --QGR---L-APPLLEQIGSVGLLNLD-DSFFDFVRETYRERVETVLKKLEEHGLKRFTKP----SGAFYITAELP-VED 339 (409)
T ss_dssp --HHS---C-CCCHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCC----SBSSEEEEECS-SSC
T ss_pred --hcc---C-CCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHcCceeeeCC----CeeEEEEEEeC-CCC
Confidence 001 1 35555555555555432 23377788899999999999999988777 554 34556777875 567
Q ss_pred HHHHHHHHHhh-----CCeEEccCCCC-----CCCcEEEEeec
Q 017726 319 SSEIVRRAWQR-----YNLSLGLGLNK-----VAGKVFRIGHL 351 (367)
Q Consensus 319 ~~~l~~~L~~~-----~gv~v~~g~~~-----~~~~~iRi~~~ 351 (367)
..++.++|.++ +||.+.+|..+ ..++++||++.
T Consensus 340 ~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~ 382 (409)
T 2gb3_A 340 AEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV 382 (409)
T ss_dssp HHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC
T ss_pred HHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC
Confidence 88999999866 59999987433 22568999976
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-30 Score=238.61 Aligned_cols=301 Identities=14% Similarity=0.127 Sum_probs=225.7
Q ss_pred ChHHHHHHHccCCC----CCCC----CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 20 IPDQVIRAMNRNNE----DYRS----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 20 ~~~~v~~a~~~~~~----~~~~----~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
.++.+.+++.+... .... .+..+..+++++.+++++|.+ ++++++||++|+..++.+++.+||.|++..
T Consensus 58 ~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~---~v~~~~ggt~a~~~~~~~~~~~gd~V~~~~ 134 (398)
T 3a2b_A 58 TDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKE---AAILFSTGFQSNLGPLSCLMGRNDYILLDE 134 (398)
T ss_dssp GCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHSSCTTCEEEEET
T ss_pred CCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHHhCCCCEEEECC
Confidence 56677777766321 1111 123467889999999999963 599999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcE
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPAL 171 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~ 171 (367)
|.|.+.. ..++..|.+++.++. +|++++++++++....++++|++++++||||.+.|+++|.++|++ +|++
T Consensus 135 p~~~~~~--~~~~~~g~~~~~v~~-----~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~--~~~~ 205 (398)
T 3a2b_A 135 RDHASII--DGSRLSFSKVIKYGH-----NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANE--FDAA 205 (398)
T ss_dssp TCCHHHH--HHHHHSSSEEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHH--HTCE
T ss_pred ccCHHHH--HHHHHcCCceEEeCC-----CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHH--cCcE
Confidence 9877653 456778999999886 489999999986321168999999999999999999999999999 9999
Q ss_pred EEEeeeeccCcee---ecccc-----ccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhc
Q 017726 172 FLVDGVSSICAID---FRMDE-----WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL 243 (367)
Q Consensus 172 vi~D~~~~~~~~~---~~~~~-----~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (367)
+|+|++|+.+... .+... .++|++++|+||+++ +.| |++++++++++++..... .+.
T Consensus 206 li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~G-G~~~~~~~~~~~l~~~~~------------~~~- 270 (398)
T 3a2b_A 206 VMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLA-SLG-GFVAGDADVIDFLKHNAR------------SVM- 270 (398)
T ss_dssp EEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC-SSC-EEEEECHHHHHHHHHHCH------------HHH-
T ss_pred EEEECCCcccccCCCCCchHhhcCCCcCCeEEEeccccccc-CCC-cEEEeCHHHHHHHHHhcc------------cce-
Confidence 9999999765421 11111 135999999999995 777 999999998887754210 000
Q ss_pred CCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHH
Q 017726 244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIV 323 (367)
Q Consensus 244 ~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 323 (367)
..++++..+.+++.++++.+.. ++++++++.++++++.+.|+++|+++..+ . +.++++.++++.+..++.
T Consensus 271 ---~~~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~-g~~~~~~~~~~~~~~~l~ 340 (398)
T 3a2b_A 271 ---FSASMTPASVASTLKALEIIQN--EPEHIEKLWKNTDYAKAQLLDHGFDLGAT----E-SPILPIFIRSNEKTFWVT 340 (398)
T ss_dssp ---SSBCCCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHTTCCBCSC----C-SSEEEEECCCHHHHHHHH
T ss_pred ---ecCCCCHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHHHHhcCCCcCCC----C-CCEEEEEcCCHHHHHHHH
Confidence 1223555555556667776532 56788899999999999999988877654 2 357888886545677899
Q ss_pred HHHHhhCCeEEccCCCCC---CCcEEEEeecCCCCHHH
Q 017726 324 RRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 324 ~~L~~~~gv~v~~g~~~~---~~~~iRi~~~~~~~~~~ 358 (367)
+.|.++ ||.+.++..+. ..+++||++....++++
T Consensus 341 ~~l~~~-gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~ 377 (398)
T 3a2b_A 341 KMLQDD-GVFVNPVVSPAVPAEESLIRFSLMATHTYDQ 377 (398)
T ss_dssp HHHHHT-TEECEEECTTTSCGGGCEEEEECCTTCCHHH
T ss_pred HHHHHC-CcEEEeeCCCCCCCCCceEEEEEeCCCCHHH
Confidence 999877 99999875532 24679999876555443
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-30 Score=237.43 Aligned_cols=311 Identities=13% Similarity=0.064 Sum_probs=224.8
Q ss_pred cccccCC--CCCChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCe
Q 017726 10 NHLFVPG--PVHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR 86 (367)
Q Consensus 10 ~~~~~~~--p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~ 86 (367)
.+++..| |.+.++.+.+++.+.... +.++. ....++++.++++++.+++ ++++++|+++++..++.++ +||+
T Consensus 26 ~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~~--~~~~~l~~~la~~~~~~~~-~v~~~~g~~~al~~~~~~~--~gd~ 100 (364)
T 1lc5_A 26 LLDFSANINPLGMPVSVKRALIDNLDCIERYPD--ADYFHLHQALARHHQVPAS-WILAGNGETESIFTVASGL--KPRR 100 (364)
T ss_dssp SEECSSCCCTTCCCHHHHHHHHHTGGGGGSCCC--TTCHHHHHHHHHHHTSCGG-GEEEESSHHHHHHHHHHHH--CCSE
T ss_pred eEEeccccCCCCCCHHHHHHHHHHHHHhhcCCC--CCHHHHHHHHHHHHCcCHH-HEEECCCHHHHHHHHHHHc--CCCe
Confidence 3444444 344678899998886532 22222 2467999999999998754 5999999999999999887 7799
Q ss_pred EEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCC-HHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHH
Q 017726 87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAK-LDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKL 162 (367)
Q Consensus 87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d-~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~ 162 (367)
|++..|.|++.. ..++..|.+++.++.+.+..++ ++++.+.+. +++++|++++|+||||.++| +++|.++
T Consensus 101 vl~~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~ 174 (364)
T 1lc5_A 101 AMIVTPGFAEYG--RALAQSGCEIRRWSLREADGWQLTDAILEALT----PDLDCLFLCTPNNPTGLLPERPLLQAIADR 174 (364)
T ss_dssp EEEEESCCTHHH--HHHHHTTCEEEEEECCGGGTTCCCTTHHHHCC----TTCCEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred EEEeCCCcHHHH--HHHHHcCCeEEEEeCCcccccchhHHHHHhcc----CCCCEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence 999999888753 5567789999999987532344 465655554 46799999999999999998 8889999
Q ss_pred HHhcCCCcEEEEeeeeccCce----eecc-ccccceEEEecCCCcccCCCc--ceeee-eCHHHHHHhccCCCCceeech
Q 017726 163 LDEYRHPALFLVDGVSSICAI----DFRM-DEWGIDVALTGSQKALSLPTG--MGIVC-ASPKALEASKTAKSVRVFFDW 234 (367)
Q Consensus 163 ~~~~~~~~~vi~D~~~~~~~~----~~~~-~~~~~d~~~~s~~K~~~g~~g--~g~~~-~~~~~~~~~~~~~~~~~~~~~ 234 (367)
|++ +|+++|+|++|+.+.. ..+. ...+.++++.|+||+++ ++| +|+++ .++++++++.....
T Consensus 175 ~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~l~~~~~------- 244 (364)
T 1lc5_A 175 CKS--LNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYA-IPGLRLGYLVNSDDAAMARMRRQQM------- 244 (364)
T ss_dssp HHH--HTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTT-CTTTCCEEEECCCHHHHHHHHHHSC-------
T ss_pred hhh--cCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhc-CCccceEEEEECCHHHHHHHHHhCC-------
Confidence 999 9999999999986442 1222 23467899999999995 344 69999 99998887764311
Q ss_pred HHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEc
Q 017726 235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV 313 (367)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~ 313 (367)
.++++...+.++.++++. ...++++++++.++++++.+.|+++ |+.+..+ .+.++++.+
T Consensus 245 -------------~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-----~g~~~~~~~ 304 (364)
T 1lc5_A 245 -------------PWSVNALAALAGEVALQD--SAWQQATWHWLREEGARFYQALCQLPLLTVYPG-----RANYLLLRC 304 (364)
T ss_dssp -------------TTCSCHHHHHHHHHGGGC--HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCC-----SSSEEEEEE
T ss_pred -------------CCCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCC-----CCeEEEEEC
Confidence 234666555555555544 1237788889999999999999987 8776543 234667777
Q ss_pred CCCCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 314 PSHINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 314 ~~~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
++ +..++.+.|.++ ||.+.+|..+ ..++++||++. ..++.+.+.++|+
T Consensus 305 ~~--~~~~l~~~l~~~-gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~ 354 (364)
T 1lc5_A 305 ER--EDIDLQRRLLTQ-RILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALR 354 (364)
T ss_dssp SC--TTCCHHHHHHTT-TEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHH
T ss_pred CC--cHHHHHHHHHHC-CcEEeeCcccCCCCCCEEEEEeC-CHHHHHHHHHHHH
Confidence 53 345788999765 9999987543 33578999954 3334444555554
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=3e-31 Score=246.21 Aligned_cols=304 Identities=15% Similarity=0.068 Sum_probs=219.0
Q ss_pred ChHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHh----cCC--CCceEEecCChhHHHHHHHHccCCCCCeEEE
Q 017726 20 IPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIF----KTT--SGTPFLIPTTGTGAWESALTNTLSPGDRIIS 89 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~----~~~--~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~ 89 (367)
.++.+.+++.+.... ...|.......++|+.+++++ |.+ .+++|++++|+++++..++.+++.+||+|++
T Consensus 59 ~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~ 138 (425)
T 1vp4_A 59 PRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVL 138 (425)
T ss_dssp CHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEE
T ss_pred CHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCCCCCEEEE
Confidence 467788877664321 112222233457777777777 843 3346999999999999999998999999999
Q ss_pred EeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcc-----CCCCccEE-EEEecCCCcccccc---HHHHH
Q 017726 90 FLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAAD-----TAHTIKAI-CIVHNETATGVTNN---LSKVR 160 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~-----~~~~~~lv-~~~~~~n~tG~~~~---~~~i~ 160 (367)
..|.|++.. ..++..|.+++.++.++++ +|++++++++++. . +++++| ++++|+||||.++| +++|.
T Consensus 139 ~~p~y~~~~--~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~-~~~~~v~~~~~~~nptG~~~~~~~l~~l~ 214 (425)
T 1vp4_A 139 DDPAYLGAI--NAFRQYLANFVVVPLEDDG-MDLNVLERKLSEFDKNGKI-KQVKFIYVVSNFHNPAGVTTSLEKRKALV 214 (425)
T ss_dssp EESCCHHHH--HHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCG-GGEEEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred eCCCcHHHH--HHHHHcCCEEEEeccCCCC-CCHHHHHHHHHhhhhcccC-CCceEEEECCCCCCCCCCcCCHHHHHHHH
Confidence 999887753 5567789999999987654 8999999999751 1 267888 57899999999987 56788
Q ss_pred HHHHhcCCCcEEEEeeeeccCce----eecc---ccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeec
Q 017726 161 KLLDEYRHPALFLVDGVSSICAI----DFRM---DEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFD 233 (367)
Q Consensus 161 ~~~~~~~~~~~vi~D~~~~~~~~----~~~~---~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 233 (367)
++|++ +|+++|+|++|+.+.. ..++ ...+.++++.|++|++++..++|++++++++++++.....
T Consensus 215 ~~~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~l~~~~~------ 286 (425)
T 1vp4_A 215 EIAEK--YDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAGSKEFIRKIVQAKQ------ 286 (425)
T ss_dssp HHHHH--TTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGGGCEEEEECCHHHHHHHHHHHH------
T ss_pred HHHHH--cCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccccccceEEEeeCHHHHHHHHHHhh------
Confidence 99999 9999999999986432 1122 1225689999999999622236999999998877753210
Q ss_pred hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHHHHHc-----CCccccCCCccCCCc
Q 017726 234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLI-FEEGLENVIERHRRLGKATRLAVEAW-----GLKNCTQKEEWFSDT 307 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~-~~~g~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~ 307 (367)
. . .++.+...+.++..+++.. .+..++++++++.++++++.+.|++. |+.+..+ ..+.
T Consensus 287 -------~--~---~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~----~~g~ 350 (425)
T 1vp4_A 287 -------S--A---DLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKS----EGGL 350 (425)
T ss_dssp -------H--H---HSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCC----SBSS
T ss_pred -------h--h---cCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecC----CccE
Confidence 0 0 1234555555555555542 11236788888999999999999885 5776654 3455
Q ss_pred eEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC----CCcEEEEeecC
Q 017726 308 VTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV----AGKVFRIGHLG 352 (367)
Q Consensus 308 ~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~----~~~~iRi~~~~ 352 (367)
+++++++++.+..++++.|.++ ||.+.+|..+. ..+++||++..
T Consensus 351 ~~~~~~~~~~~~~~l~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~ 398 (425)
T 1vp4_A 351 FIWLTLPEGFDTWEMFEYAKRK-KVFYVPGRVFKVYDEPSPSMRLSFCL 398 (425)
T ss_dssp EEEEECCTTCCTTTTHHHHHHH-TEECEEGGGGCTTCCCCSEEEEECSS
T ss_pred EEEEEcCCCCCHHHHHHHHHHC-CCEEECchhhcCCCCCCCeEEEEeCC
Confidence 7888887666778899999877 99999875432 34689999755
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.98 E-value=3.6e-30 Score=237.17 Aligned_cols=301 Identities=15% Similarity=0.123 Sum_probs=222.9
Q ss_pred ChHHHHHHHccCCCC----CCCCcH----HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 20 IPDQVIRAMNRNNED----YRSPAV----PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~----~~~~~~----~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
.++.+.+++.+.... +....+ .....++++.+++++|.+ + .+++++|++++..++.+++.+||.|++..
T Consensus 60 ~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~--~-~i~~~sGs~a~~~~~~~~~~~gd~v~~~~ 136 (401)
T 1fc4_A 60 NHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGME--D-AILYSSCFDANGGLFETLLGAEDAIISDA 136 (401)
T ss_dssp TCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCS--E-EEEESCHHHHHHTTHHHHCCTTCEEEEET
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCCC--c-EEEeCChHHHHHHHHHHHcCCCCEEEEcc
Confidence 367788887764321 111122 366889999999999987 3 35557779999998888899999999998
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCC--CccEEEEEecCCCccccccHHHHHHHHHhcCCC
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAH--TIKAICIVHNETATGVTNNLSKVRKLLDEYRHP 169 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~--~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~ 169 (367)
+.|.+.. ..++..|.+++.++. .|++++++++++.... ++++|++++++||||.+.|+++|.++|++ +|
T Consensus 137 ~~~~~~~--~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~--~~ 207 (401)
T 1fc4_A 137 LNHASII--DGVRLCKAKRYRYAN-----NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADK--YD 207 (401)
T ss_dssp TCCHHHH--HHHHTSCSEEEEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHH--TT
T ss_pred hhHHHHH--HHHHHcCCceEEECC-----CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHH--cC
Confidence 8776543 456778999888873 4789999998752101 67999999999999999999999999999 99
Q ss_pred cEEEEeeeeccCce-e--------eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHH
Q 017726 170 ALFLVDGVSSICAI-D--------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240 (367)
Q Consensus 170 ~~vi~D~~~~~~~~-~--------~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (367)
+++|+|++|+.+.. + .+.. .+.|+++.|+||+++++.| |++++++++++++..... .
T Consensus 208 ~~li~De~~~~g~~~~~g~~~~~~~~~~-~~~di~~~s~sK~~~~~~g-G~~~~~~~~~~~l~~~~~------------~ 273 (401)
T 1fc4_A 208 ALVMVDDSHAVGFVGENGRGSHEYCDVM-GRVDIITGTLGKALGGASG-GYTAARKEVVEWLRQRSR------------P 273 (401)
T ss_dssp EEEEEECTTTTTTSSTTSCCHHHHTTCT-TCCSEEEEESSSTTCSSSC-EEEEECHHHHHHHHHHCH------------H
T ss_pred CEEEEECcccccccCCCCCccHHHcCCC-cCCcEEEecchhhccCCCC-EEEEcCHHHHHHHHHhCc------------C
Confidence 99999999964332 1 2222 2579999999999966776 999999999887764210 0
Q ss_pred hhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHH
Q 017726 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSS 320 (367)
Q Consensus 241 ~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (367)
+. +.++++...++++.++++.+.+ .+++++++.++++++.+.|+++|+++..+ .+.++++.++++.+..
T Consensus 274 ~~----~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-----~~~~~~~~~~~~~~~~ 342 (401)
T 1fc4_A 274 YL----FSNSLAPAIVAASIKVLEMVEA--GSELRDRLWANARQFREQMSAAGFTLAGA-----DHAIIPVMLGDAVVAQ 342 (401)
T ss_dssp HH----HSCCCCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTTCCBCCS-----SSSEEEEEEECHHHHH
T ss_pred ce----eCCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCcccCC-----CCCEEEEEcCChHHHH
Confidence 00 0224667666777777777654 46788899999999999999988777632 4557788885444567
Q ss_pred HHHHHHHhhCCeEEccCCCCC---CCcEEEEeecCCCCHHH
Q 017726 321 EIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 321 ~l~~~L~~~~gv~v~~g~~~~---~~~~iRi~~~~~~~~~~ 358 (367)
++.+.|.++ ||.+.++..+. ..+++||++....++++
T Consensus 343 ~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~ 382 (401)
T 1fc4_A 343 KFARELQKE-GIYVTGFFYPVVPKGQARIRTQMSAAHTPEQ 382 (401)
T ss_dssp HHHHHHHHT-TEECCEECTTSSCTTCEEEEEECCTTCCHHH
T ss_pred HHHHHHHHC-CcEEeeecCCCCCCCCceEEEEeCCCCCHHH
Confidence 899999766 99999875432 23579999875555443
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-31 Score=244.12 Aligned_cols=318 Identities=13% Similarity=0.078 Sum_probs=225.4
Q ss_pred CChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhc------CCCCceEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 19 HIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFK------TTSGTPFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~------~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
++++.+.+++.+.... ...|.......++++.++++++ .++.+++++++|+++++..++.+++.+||+|++.
T Consensus 36 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~ 115 (410)
T 3e2y_A 36 SPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIM 115 (410)
T ss_dssp CCCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEe
Confidence 4678888888875432 1122211223466666666665 3342469999999999999999999999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCC-----------CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc---cH
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESD-----------WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN---NL 156 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~-----------~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~---~~ 156 (367)
.|.|++.. ..++..|.+++.++.+ .++.+|+++++++++ +++++|++++|+||||.++ ++
T Consensus 116 ~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~----~~~~~v~~~~p~nptG~~~~~~~l 189 (410)
T 3e2y_A 116 VPFYDCYE--PMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFS----SKTKAIILNTPHNPLGKVYTRQEL 189 (410)
T ss_dssp ESCCTTHH--HHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCC----TTEEEEEEESSCTTTCCCCCHHHH
T ss_pred CCCchhhH--HHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcC----CCceEEEEeCCCCCCCcCcCHHHH
Confidence 99887753 5567789999999876 244689999999886 4779999999999999996 58
Q ss_pred HHHHHHHHhcCCCcEEEEeeeeccCce----eeccc----cccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCC
Q 017726 157 SKVRKLLDEYRHPALFLVDGVSSICAI----DFRMD----EWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKS 227 (367)
Q Consensus 157 ~~i~~~~~~~~~~~~vi~D~~~~~~~~----~~~~~----~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~ 227 (367)
++|.++|++ +|+++|+|++|+.+.. ..++. ..+.++++.|++|.++ ++.++|++++++++++.+....
T Consensus 190 ~~l~~~~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~- 266 (410)
T 3e2y_A 190 QVIADLCVK--HDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIGPAHLIKHLQTVQ- 266 (410)
T ss_dssp HHHHHHHHH--HTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEECCHHHHHHHHHHH-
T ss_pred HHHHHHHHH--cCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEEEECHHHHHHHHHHH-
Confidence 889999999 9999999999975332 11111 1245699999999995 2334799999999888775321
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHH------HHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCC
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLI------FEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKE 301 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~------~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 301 (367)
... .++++.....++..++... .+..++++++++.++++++.+.|+++|+.+..+
T Consensus 267 ---------------~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-- 327 (410)
T 3e2y_A 267 ---------------QNS--FYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPIVP-- 327 (410)
T ss_dssp ---------------HTT--TCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEBC--
T ss_pred ---------------Hhh--ccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCC--
Confidence 111 3345665555555555531 122277888999999999999999998887766
Q ss_pred ccCCCceEEEEcCC---CCC--------HHHHHHHHHhhCCeEEccCCCCC-------CCcEEEEeecCCCCHHHHHHhh
Q 017726 302 EWFSDTVTAVIVPS---HIN--------SSEIVRRAWQRYNLSLGLGLNKV-------AGKVFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 302 ~~~~~~~~~~~~~~---~~~--------~~~l~~~L~~~~gv~v~~g~~~~-------~~~~iRi~~~~~~~~~~~~~~~ 363 (367)
..+.++++.++. +.+ ..++++++.+++||.+.+|..+. ..+++||++....++.+...+.
T Consensus 328 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~l~~~l~~ 405 (410)
T 3e2y_A 328 --DGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEI 405 (410)
T ss_dssp --SBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCCCHHHHHHHHHH
T ss_pred --CccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcCCHHHHHHHHHH
Confidence 355567777632 122 24788877777799999885442 2478999976644444555555
Q ss_pred hhc
Q 017726 364 LFQ 366 (367)
Q Consensus 364 l~~ 366 (367)
|.+
T Consensus 406 l~~ 408 (410)
T 3e2y_A 406 FRA 408 (410)
T ss_dssp HHT
T ss_pred HHh
Confidence 544
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-30 Score=235.97 Aligned_cols=304 Identities=14% Similarity=0.125 Sum_probs=223.1
Q ss_pred CChHHHHHHHccCCCC-------CCC-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 19 HIPDQVIRAMNRNNED-------YRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-------~~~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
+.++.+.+++.+.... .+. +.......++++.+++++|.+ + .+++++|++++..++.+++++||.|++.
T Consensus 53 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~--~-~i~~~sGt~a~~~~~~~~~~~gd~v~~~ 129 (384)
T 1bs0_A 53 SHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYS--R-ALLFISGFAANQAVIAAMMAKEDRIAAD 129 (384)
T ss_dssp GGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCS--E-EEEESCHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCC--c-EEEeCCcHHHHHHHHHHhCCCCcEEEEc
Confidence 3567777777664221 111 123467889999999999985 3 5666777999999999889999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCc
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPA 170 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~ 170 (367)
.+.|.+.. ..++..|.+++.++. .|++++++++++.. +++++|++++++||||.++|+++|.++|++ +|+
T Consensus 130 ~~~~~~~~--~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~l~~~--~~~ 199 (384)
T 1bs0_A 130 RLSHASLL--EAASLSPSQLRRFAH-----NDVTHLARLLASPC-PGQQMVVTEGVFSMDGDSAPLAEIQQVTQQ--HNG 199 (384)
T ss_dssp TTCCHHHH--HHHHTSSSEEEEECT-----TCHHHHHHHHHSCC-SSCEEEEEESBCTTTCCBCCHHHHHHHHHH--TTC
T ss_pred ccccHHHH--HHHHHcCCCEEEeCC-----CCHHHHHHHHHhcC-CCCeEEEEeCCCCCCCCccCHHHHHHHHHH--cCc
Confidence 88766543 456778999988874 48999999998643 247899999999999999999999999999 999
Q ss_pred EEEEeeeeccCcee-----e-ccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcC
Q 017726 171 LFLVDGVSSICAID-----F-RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLG 244 (367)
Q Consensus 171 ~vi~D~~~~~~~~~-----~-~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (367)
++|+|++|+.+... + .....+.|++++|+||+++ ++| |++++++++++++..... .+..
T Consensus 200 ~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~G-G~~~~~~~~~~~l~~~~~------------~~~~- 264 (384)
T 1bs0_A 200 WLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFG-VSG-AAVLCSSTVADYLLQFAR------------HLIY- 264 (384)
T ss_dssp EEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTS-SCC-EEEEECHHHHHHHHHHCH------------HHHS-
T ss_pred EEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhh-ccC-cEEEeCHHHHHHHHHhch------------hhhc-
Confidence 99999999765421 1 1111357899999999995 777 999999998887653210 0111
Q ss_pred CccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHH
Q 017726 245 TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVR 324 (367)
Q Consensus 245 ~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 324 (367)
..+++...+.++.++++.+.+...++.++++.++++++.+.|+++|+++..+ .+.++++.++++.+..++.+
T Consensus 265 ---~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-----~~~~~~~~~~~~~~~~~l~~ 336 (384)
T 1bs0_A 265 ---STSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADS-----CSAIQPLIVGDNSRALQLAE 336 (384)
T ss_dssp ---SBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECSC-----CSSBCCEEEESHHHHHHHHH
T ss_pred ---CCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcCCcccCC-----CCCEEEEEeCCHHHHHHHHH
Confidence 1146666667777778776532356788899999999999999888776532 23455677654445778999
Q ss_pred HHHhhCCeEEccCCCCC---CCcEEEEeecCCCCHHHH
Q 017726 325 RAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 325 ~L~~~~gv~v~~g~~~~---~~~~iRi~~~~~~~~~~~ 359 (367)
.|.++ ||.+.++..+. ..+++||++....+.+++
T Consensus 337 ~l~~~-gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i 373 (384)
T 1bs0_A 337 KLRQQ-GCWVTAIRPPTVPAGTARLRLTLTAAHEMQDI 373 (384)
T ss_dssp HHHHT-TEECCEECTTSSCTTCEEECCBCCTTCCHHHH
T ss_pred HHHHC-CcEEEeecCCCCCCCCceEEEEEcCCCCHHHH
Confidence 99766 99999875432 236799998765555443
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-31 Score=243.31 Aligned_cols=318 Identities=11% Similarity=0.020 Sum_probs=226.7
Q ss_pred ChHHH--HHHHccCCCC--CCCCcHHHHHHHHHHHHHHHh-----cCCCCce---EEecCChhHHHHHHHHccCCCCCeE
Q 017726 20 IPDQV--IRAMNRNNED--YRSPAVPALTKTLLEDIKKIF-----KTTSGTP---FLIPTTGTGAWESALTNTLSPGDRI 87 (367)
Q Consensus 20 ~~~~v--~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~-----~~~~~~~---v~~~~ggt~al~~~~~~~~~~gd~v 87 (367)
.++.+ ++++.+.... ...|.......++++.+++++ +.++ ++ +++|+|+++|+..++.+++.+||+|
T Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~-~~~~~i~~t~g~~~al~~~~~~l~~~gd~V 140 (430)
T 2x5f_A 62 GKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSI-DNMSRPIVTNALTHGLSLVGDLFVNQDDTI 140 (430)
T ss_dssp EECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCG-GGBCCCEEESHHHHHHHHHHHHHCCTTCEE
T ss_pred CchhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccCcccCC-CccceEEEcCCchHHHHHHHHHHhCCCCEE
Confidence 34444 7777765432 223332234568899999988 6654 45 8999999999999999999999999
Q ss_pred EEEeCCcchHHHHHHHHH-hCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHH
Q 017726 88 ISFLIGQFSLLWIDQQQR-LNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKL 162 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~-~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~ 162 (367)
++..|.|++.. ..++. .|.+++.++.+. ++.+|++++++++++.. ++++++++++|+||||.++| +++|.++
T Consensus 141 l~~~p~y~~~~--~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~v~i~~p~nptG~~~~~~~l~~i~~~ 217 (430)
T 2x5f_A 141 LLPEHNWGNYK--LVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYN-KDKVIMILNYPNNPTGYTPTHKEVTTIVEA 217 (430)
T ss_dssp EEESSCCTHHH--HHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCC-SSEEEEEECSSCTTTCCCCCHHHHHHHHHH
T ss_pred EEcCCcCccHH--HHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcC-CCCEEEEEcCCCCCCCCcCCHHHHHHHHHH
Confidence 99999888753 55677 899999999865 45789999999998633 36799999999999999998 6677777
Q ss_pred HHh---cCCCcEEEEeeeeccCce------ee--cccc-ccc---eEEEecCCCcccCCCc--ceeeee---CHHHHHHh
Q 017726 163 LDE---YRHPALFLVDGVSSICAI------DF--RMDE-WGI---DVALTGSQKALSLPTG--MGIVCA---SPKALEAS 222 (367)
Q Consensus 163 ~~~---~~~~~~vi~D~~~~~~~~------~~--~~~~-~~~---d~~~~s~~K~~~g~~g--~g~~~~---~~~~~~~~ 222 (367)
|++ ..+|+++|+|++|+.+.. ++ ++.. .+. ++++.|+||+++ ++| +|++++ ++++++++
T Consensus 218 ~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~riG~~~~~~~~~~~~~~l 296 (430)
T 2x5f_A 218 IKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFF-AWGFRVGFMTFGTSDQTTKEVL 296 (430)
T ss_dssp HHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTT-CGGGCCEEEEEBCCCHHHHHHH
T ss_pred HHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCC-CCCCCeEEEEEecCCHHHHHHH
Confidence 765 226899999999875432 11 2222 345 788999999994 445 699999 99988877
Q ss_pred ccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHH-HHH-HhChHHHHHHHHHHHHHHHHHHH----HcCCcc
Q 017726 223 KTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALD-LIF-EEGLENVIERHRRLGKATRLAVE----AWGLKN 296 (367)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~-~~~-~~g~~~~~~~~~~~~~~l~~~L~----~~g~~~ 296 (367)
..... ....+. .++++.....++..+++ ... ...++++++++.++++++.+.|+ +.|+.+
T Consensus 297 ~~~~~------------~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~ 362 (430)
T 2x5f_A 297 EAKVK------------GLIRSN--ISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQA 362 (430)
T ss_dssp HHHHH------------HHHHTT--TSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEE
T ss_pred HHHHh------------hhhhcc--cCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcee
Confidence 53210 000011 23466666666666776 311 11145588899999999999998 557766
Q ss_pred ccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHhhhh
Q 017726 297 CTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQLLF 365 (367)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 365 (367)
..+ .++.+++++++ +.+..++.+.|.+++||.+.+| ..+++||++.. ..++.+...+.|.
T Consensus 363 ~~~----~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g----~~~~iRis~~~~~~e~i~~~~~~l~ 423 (430)
T 2x5f_A 363 YDF----NSGYFMAIKVH-DVDPEALRKHLIDKYSIGVIAL----NATDIRIAFSCVEKDDIPHVFDSIA 423 (430)
T ss_dssp CCC----CBSSEEEEEES-SSCHHHHHHHHHHHHCEECEEC----SSSEEEEEGGGSCGGGHHHHHHHHH
T ss_pred eCC----CceEEEEeCCC-CCCHHHHHHHHHHhCCEEEecC----CCCeEEEEEecCCHHHHHHHHHHHH
Confidence 655 35556888886 6788899999987469999987 34689999873 3333444444443
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-30 Score=237.12 Aligned_cols=282 Identities=15% Similarity=0.148 Sum_probs=216.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 120 (367)
.....++++.+++++|.+ + .++++||++++..++.+++.+||.|++..+.|.+.. ..++..|.+++.++.
T Consensus 108 ~~~~~~l~~~la~~~g~~--~-~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~--~~~~~~g~~~~~~~~----- 177 (427)
T 2w8t_A 108 FHDHMEVEQALRDFYGTT--G-AIVFSTGYMANLGIISTLAGKGEYVILDADSHASIY--DGCQQGNAEIVRFRH----- 177 (427)
T ss_dssp CHHHHHHHHHHHHHHTCS--E-EEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHH--HHHHHSCSEEEEECT-----
T ss_pred cHHHHHHHHHHHHHhCCC--c-eEEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHH--HHHHHcCCeeEEeCC-----
Confidence 467789999999999875 3 566788899999999888999999999998777653 446778999888874
Q ss_pred CCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCcee---------ecccccc
Q 017726 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID---------FRMDEWG 191 (367)
Q Consensus 121 ~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~---------~~~~~~~ 191 (367)
.|++++++++++....++++|++++++||+|.+.|+++|.++|++ +|+++|+|++|+.+... +++. .+
T Consensus 178 ~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~--~g~~li~Dea~~~~~~~~~g~~~~~~~~~~-~~ 254 (427)
T 2w8t_A 178 NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKK--HGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQ 254 (427)
T ss_dssp TCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECCHHHHHHHHHH--TTCEEEEECTTTTTTSSTTSCCHHHHTTCT-TC
T ss_pred CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHH--cCCEEEEECCccccccCCCCCchHhhcCCC-cC
Confidence 489999999986321168999999999999999999999999999 99999999999876543 2222 25
Q ss_pred ceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhCh
Q 017726 192 IDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGL 271 (367)
Q Consensus 192 ~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~ 271 (367)
+|+++.|++|+++ ++| |++++++++++.+..... .+. +.++.+...++++.++++.+.+ +
T Consensus 255 ~di~~~s~sK~~g-~~g-G~v~~~~~l~~~l~~~~~------------~~~----~~~~~~~~~~aa~~~al~~~~~--~ 314 (427)
T 2w8t_A 255 IDFVVGTFSKSVG-TVG-GFVVSNHPKFEAVRLACR------------PYI----FTASLPPSVVATATTSIRKLMT--A 314 (427)
T ss_dssp CSEEEEESSSTTC-SCC-EEEEECCTTGGGGGGTCH------------HHH----SSCCCCHHHHHHHHHHHHHHTS--C
T ss_pred CcEEEecchhhhc-cCC-CEEEeCHHHHHHHHHhcc------------ccc----ccCCCCHHHHHHHHHHHHHHhc--C
Confidence 7999999999995 777 999999988777654210 000 1224666677777778877643 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC---CCcEEEE
Q 017726 272 ENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV---AGKVFRI 348 (367)
Q Consensus 272 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~---~~~~iRi 348 (367)
+++++++.++++++.+.|+++|+++..+. ..+.++++.+++..+..++.+.|.++ ||.+.++..+. ...++|+
T Consensus 315 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRi 390 (427)
T 2w8t_A 315 HEKRERLWSNARALHGGLKAMGFRLGTET---CDSAIVAVMLEDQEQAAMMWQALLDG-GLYVNMARPPATPAGTFLLRC 390 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCEESCSS---CCSSEEEEEESSHHHHHHHHHHHHHT-TEECEEECTTTSCTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccCCC---CCCCEEEEEECCHHHHHHHHHHHHHC-CeEEeeeCCCCCCCCCeEEEE
Confidence 78889999999999999999888776331 13457888886444567899999876 99999875432 2357999
Q ss_pred eecCCCCHHHH
Q 017726 349 GHLGHLNEVMF 359 (367)
Q Consensus 349 ~~~~~~~~~~~ 359 (367)
++....+++++
T Consensus 391 ~~~~~~t~e~i 401 (427)
T 2w8t_A 391 SICAEHTPAQI 401 (427)
T ss_dssp ECCTTCCHHHH
T ss_pred EeCCCCCHHHH
Confidence 98775555443
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=237.50 Aligned_cols=323 Identities=13% Similarity=0.049 Sum_probs=233.9
Q ss_pred CCCChHHHHHHHccCCCCC-----CCCcHHHHHHHHHHHHHHHhcCC--CCc--eEEecCChhHHHHHHHHccCCC----
Q 017726 17 PVHIPDQVIRAMNRNNEDY-----RSPAVPALTKTLLEDIKKIFKTT--SGT--PFLIPTTGTGAWESALTNTLSP---- 83 (367)
Q Consensus 17 p~~~~~~v~~a~~~~~~~~-----~~~~~~~~~~~~~~~la~~~~~~--~~~--~v~~~~ggt~al~~~~~~~~~~---- 83 (367)
++.+++.+.+++.+..... .++.......++++++++++|++ +++ ..++++||++|+..++.++..+
T Consensus 65 t~~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~ 144 (502)
T 3hbx_A 65 TTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNK 144 (502)
T ss_dssp CCCCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHH
Confidence 4566778888888764431 12334566778999999999998 332 1346899999999888765443
Q ss_pred ----CC-----eEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccc
Q 017726 84 ----GD-----RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVT 153 (367)
Q Consensus 84 ----gd-----~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~ 153 (367)
|+ .|+++.+.|++ +...++..|++++.++.+++ +.+|+++++++++ ++|++|++++++||||.+
T Consensus 145 ~~~~G~~~~~~~vi~~~~~h~s--~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~----~~t~~v~~~~~~n~tG~~ 218 (502)
T 3hbx_A 145 RKAEGKPVDKPNIVTGANVQVC--WEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVD----ENTICVAAILGSTLNGEF 218 (502)
T ss_dssp HHHTTCCCSCCEEEEETTCCHH--HHHHHHHTTCEEEEECCBTTBCSCCHHHHHHHCC----TTEEEEEEEBSCTTTCCB
T ss_pred HHhcCCCCCCcEEEEcCCchHH--HHHHHHHcCceeEEEecCCCcCcCCHHHHHHHHh----hCCEEEEEecCCCCCCcc
Confidence 66 89999888776 34668889999999998865 7899999999998 467999999999999999
Q ss_pred ccHHHHHHHHHhcCC------CcEEEEeeeeccCce-------eeccccccceEEEecCCCcccCCCcceeeeeCHH-HH
Q 017726 154 NNLSKVRKLLDEYRH------PALFLVDGVSSICAI-------DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPK-AL 219 (367)
Q Consensus 154 ~~~~~i~~~~~~~~~------~~~vi~D~~~~~~~~-------~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~-~~ 219 (367)
.|+++|.++|++ + |+++++|++|+.+.. +.++...++|++++++||++.+|.|+|+++++++ .+
T Consensus 219 ~~l~~I~~ia~~--~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l 296 (502)
T 3hbx_A 219 EDVKLLNDLLVE--KNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDL 296 (502)
T ss_dssp CCHHHHHHHHHH--HHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGS
T ss_pred cCHHHHHHHHHH--hhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeEEEEEeCHHHh
Confidence 999999999999 6 999999999985432 2233334799999999999988999998887643 33
Q ss_pred HHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCcccc
Q 017726 220 EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCT 298 (367)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 298 (367)
....... ..+.. .........++.+...++++++++..+..+|++++.++..++++++.+.|+++ +++++.
T Consensus 297 ~~~~~~~--~~yl~------~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~ 368 (502)
T 3hbx_A 297 PEELIFH--INYLG------ADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVS 368 (502)
T ss_dssp CGGGCEE--ECSSS------SCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECS
T ss_pred hHHhccC--ccccc------CCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 2211100 00000 00000001234555566888889999888889999999999999999999998 588876
Q ss_pred CCCccCCCceEEEEcCCC--CCHHHHHHHHHhhCCeEEccCCCC---CCCcEEEEeecCCCCHHHH
Q 017726 299 QKEEWFSDTVTAVIVPSH--INSSEIVRRAWQRYNLSLGLGLNK---VAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~~gv~v~~g~~~---~~~~~iRi~~~~~~~~~~~ 359 (367)
+.+ ...+++|+++.+ .+..++.+.|.++ ||.+.....+ ....++||++....+.+|+
T Consensus 369 ~~~---~~~~v~f~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edi 430 (502)
T 3hbx_A 369 KDE---GVPLVAFSLKDSSCHTEFEISDMLRRY-GWIVPAYTMPPNAQHITVLRVVIREDFSRTLA 430 (502)
T ss_dssp CSS---SSSEEEEEESSCSSCCHHHHHHHHHTT-TCBCCEEECCTTCTTCEEEEEECCTTCCHHHH
T ss_pred CCC---CceEEEEEecCCCcCCHHHHHHHHHhC-CcEEeeccCCcccCCceEEEEEeCCCCCHHHH
Confidence 421 344788888542 5667999999755 9987543222 1235699998776665433
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-30 Score=242.59 Aligned_cols=343 Identities=11% Similarity=0.059 Sum_probs=230.6
Q ss_pred CcccccCCCCCChHHHHHHHccCCCC---CC--CCcHHHHHHHHHHHHHHHhcCCC-CceEEecCChhHHHHHHHHccCC
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNED---YR--SPAVPALTKTLLEDIKKIFKTTS-GTPFLIPTTGTGAWESALTNTLS 82 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~~~~~la~~~~~~~-~~~v~~~~ggt~al~~~~~~~~~ 82 (367)
+.+.+.|++...+..+.+.+....+. .+ ++......+++.+++++++|.+. ...+++++|||+|+..++.+...
T Consensus 97 ~f~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~ 176 (511)
T 3vp6_A 97 RFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARY 176 (511)
T ss_dssp TEESSSSCCCCHHHHHHHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHH
T ss_pred CceEeecCCCcHHHHHHHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHH
Confidence 45556677766666555555543222 12 33445667788889999999984 34689999999999988765432
Q ss_pred --------------CCCeEEEEeCCcchHHHHHHHHHhCC---ceEEEeCCCCCCCCHHHHHHHHhccC--CCCccEEEE
Q 017726 83 --------------PGDRIISFLIGQFSLLWIDQQQRLNF---NVDVVESDWGEGAKLDVLASKLAADT--AHTIKAICI 143 (367)
Q Consensus 83 --------------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~e~l~~~i~~~~--~~~~~lv~~ 143 (367)
+++.|+++...|++. .+.++..|+ +++.++.+.++.+|+++|+++|++.. ..++++|++
T Consensus 177 ~~~~~~~~~G~~~~~~~~v~~s~~~H~s~--~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~ 254 (511)
T 3vp6_A 177 KYFPEVKTKGMAAVPKLVLFTSEQSHYSI--KKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNA 254 (511)
T ss_dssp HHCTHHHHHCGGGSCCEEEEEETTSCTHH--HHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HhhhhhhhcCcccCCCeEEEECCCchHHH--HHHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEE
Confidence 566888888888875 366777888 99999999889999999999998631 022799999
Q ss_pred EecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeec-----cc-cccceEEEecCCCcccCCCcceeeeeCHH
Q 017726 144 VHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR-----MD-EWGIDVALTGSQKALSLPTGMGIVCASPK 217 (367)
Q Consensus 144 ~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~-----~~-~~~~d~~~~s~~K~~~g~~g~g~~~~~~~ 217 (367)
++++|++|.+.|+++|.++|++ +|+++++|++|+.+....+ .. ..++|++++++|||+++|.|+|+++++++
T Consensus 255 ~~~~~~~G~vd~l~~I~~ia~~--~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~ 332 (511)
T 3vp6_A 255 TAGTTVYGAFDPIQEIADICEK--YNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEK 332 (511)
T ss_dssp EBSCSSSCCBCCHHHHHHHHHH--HTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESST
T ss_pred ecCCCCCcccccHHHHHHHHHH--cCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCH
Confidence 9999999999999999999999 9999999999988765321 11 12579999999999998999999888665
Q ss_pred -HHHHhccCCCCceeechHHHHHHhhcCCc-cCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CC
Q 017726 218 -ALEASKTAKSVRVFFDWKDYIKFYNLGTF-WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GL 294 (367)
Q Consensus 218 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~ 294 (367)
+.++...................+..+.+ ...+.. ...++++++++.+..+|+++++++..++++++.+.|++. |+
T Consensus 333 ~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~-~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~ 411 (511)
T 3vp6_A 333 GILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRH-VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEF 411 (511)
T ss_dssp THHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTE
T ss_pred HHHHHHhccCCccccCcccccccccCccCCCCCCCCc-hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 44443221111100000000000000000 000111 133678888888888889999999999999999999997 88
Q ss_pred ccccCCCccCCCceEEEEc-CCCCC---------------HHHHHHHHHhhCCeEEcc-CCCCCCCcEEEEeecC-CCCH
Q 017726 295 KNCTQKEEWFSDTVTAVIV-PSHIN---------------SSEIVRRAWQRYNLSLGL-GLNKVAGKVFRIGHLG-HLNE 356 (367)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~-~~~~~---------------~~~l~~~L~~~~gv~v~~-g~~~~~~~~iRi~~~~-~~~~ 356 (367)
+++.+.+. .. .+++|+. |.+.+ ..++.++|.++ |+.+.. ........++|+++.+ ..+.
T Consensus 412 ~l~~~~~p-~~-~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-G~~~~~~~~~~~~~~~lRi~~~~~~~t~ 488 (511)
T 3vp6_A 412 EMVFNGEP-EH-TNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQPQGDKANFFRMVISNPAATQ 488 (511)
T ss_dssp EESSSSCC-SS-SCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHH-TSCEEEEEEETTEEEEEEECCCCTTCCH
T ss_pred EEEecCCC-Ce-EEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEEEeCCceEEEEEEecCCCCCH
Confidence 88773111 23 3466664 32221 23688888877 654432 1111112469999844 4444
Q ss_pred HHH
Q 017726 357 VMF 359 (367)
Q Consensus 357 ~~~ 359 (367)
+|+
T Consensus 489 ~di 491 (511)
T 3vp6_A 489 SDI 491 (511)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-30 Score=231.86 Aligned_cols=308 Identities=13% Similarity=0.085 Sum_probs=219.3
Q ss_pred cccccC--CCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeE
Q 017726 10 NHLFVP--GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRI 87 (367)
Q Consensus 10 ~~~~~~--~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~v 87 (367)
.+.|.- .|.+.++.+.+++.+.......|.... ..++|+.++++++++++ ++++|+|+++++..++.++. ||+|
T Consensus 17 ~id~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~-~~~lr~~la~~~~~~~~-~i~~t~g~~~al~~~~~~l~--gd~V 92 (350)
T 3fkd_A 17 IVNFSTTVWTDGDKDHLEKHLVENLNCIRHYPEPD-AGTLRQMLAKRNSVDNN-AILVTNGPTAAFYQIAQAFR--GSRS 92 (350)
T ss_dssp CEECSCCSCCCSCCHHHHHHHHHTGGGGGSCCCTT-CHHHHHHHHHHTTCCGG-GEEEESHHHHHHHHHHHHTT--TCEE
T ss_pred EEEccCCCCCCCCCHHHHHHHHHhHhHHhcCCCCc-HHHHHHHHHHHhCcCHH-HEEEcCCHHHHHHHHHHHHC--CCEE
Confidence 344443 345678889999988653322222112 26899999999998764 59999999999999998877 9999
Q ss_pred EEEeCCcchHHHHHHHHHhCCceEEEeC-CCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhc
Q 017726 88 ISFLIGQFSLLWIDQQQRLNFNVDVVES-DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY 166 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~ 166 (367)
++..|.|.+.. ..++..|++++.++. +....+++ +++++|++++|+||||.++|.+++.++++.
T Consensus 93 i~~~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~~------------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~- 157 (350)
T 3fkd_A 93 LIAIPSFAEYE--DACRMYEHEVCFYPSNEDIGEADF------------SNMDFCWLCNPNNPDGRLLQRTEILRLLND- 157 (350)
T ss_dssp EEEESCCHHHH--HHHHHTTCEEEEEETTSCGGGSCC------------TTCSEEEEESSCTTTCCCCCHHHHHHHHHH-
T ss_pred EEeCCCcHHHH--HHHHHcCCeEEEEecCCccccCcc------------CCCCEEEEeCCCCCcCCCCCHHHHHHHHHh-
Confidence 99999877643 567889999999998 65444443 257999999999999999999999999988
Q ss_pred CCC-cEEEEeeeeccCcee-----eccccccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeechHHHHH
Q 017726 167 RHP-ALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIK 239 (367)
Q Consensus 167 ~~~-~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (367)
.+ .++|+|++|+.+... ......+.++++.|++|+++ .+.++|+++.++++++++.....
T Consensus 158 -~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~------------ 224 (350)
T 3fkd_A 158 -HPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFST------------ 224 (350)
T ss_dssp -CTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTTCC------------
T ss_pred -CCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCHHHHHHHHHhCC------------
Confidence 43 599999998754322 12223356799999999995 23447999999999888875321
Q ss_pred HhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCC
Q 017726 240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHIN 318 (367)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (367)
+++++...+.++..+++..... .+++.+ ..++++++.+.|+++ |+.+..+ .+.+++++++.. +
T Consensus 225 --------~~~~~~~~~~~~~~~l~~~~~~-~~~~~~-~~~~~~~l~~~L~~~~~~~~~~~-----~~~~~~~~~~~~-~ 288 (350)
T 3fkd_A 225 --------PWAVNALAIEAAKFILIHPAQF-TLPIRK-WQRNTVDFITALNRLDGVEVHPS-----GTTFFLLRLKKG-T 288 (350)
T ss_dssp --------TTCSCHHHHHHHHHHHHCTTTT-CCCHHH-HHHHHHHHHHHHHHSTTEEECCC-----SSSEEEEEESSS-C
T ss_pred --------CCCCCHHHHHHHHHHHhCHHHH-HHHHHH-HHHHHHHHHHHHhcCCCcEECCC-----CCcEEEEECCCC-C
Confidence 3346665444444444432211 233333 348899999999998 8877654 334667888655 7
Q ss_pred HHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 319 SSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 319 ~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
..++.+.|.+++||.+.+|..+ ..++++||++ +..++.|.+.++|++
T Consensus 289 ~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~-~~~~~~~~l~~al~~ 337 (350)
T 3fkd_A 289 AAELKKYMLEEYNMLIRDASNFRGLDESYVRITT-QRPAQNQLFIKALET 337 (350)
T ss_dssp HHHHHHHHHHTTCEECEECTTSTTCCTTEEEEEC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEc-CCHHHHHHHHHHHHH
Confidence 8899999987579999988543 3467899995 444555566666654
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-30 Score=240.83 Aligned_cols=317 Identities=10% Similarity=0.054 Sum_probs=219.8
Q ss_pred CChHHHHHHHccCCC-----C-CCCCcHHHHHHHHHHHHHHHh----cCCCCceEEecCChhHHHHHHHHccCCCCCeEE
Q 017726 19 HIPDQVIRAMNRNNE-----D-YRSPAVPALTKTLLEDIKKIF----KTTSGTPFLIPTTGTGAWESALTNTLSPGDRII 88 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~-----~-~~~~~~~~~~~~~~~~la~~~----~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl 88 (367)
+.++.+.+++.+... . ...|.......++++.+++++ +.++ ++|++++|+++++..+ .+++.+||.|+
T Consensus 82 ~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~-~~i~~t~G~~~al~~~-~~l~~~gd~Vl 159 (449)
T 3qgu_A 82 PLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAA-DEIFISDGSKCDIARI-QMMFGSKPTVA 159 (449)
T ss_dssp CCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCG-GGEEEESCHHHHHHHH-HHHHCSSSCEE
T ss_pred CCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCH-HHEEEccCHHHHHHHH-HHHhCCCCEEE
Confidence 467777777766432 1 223333345678999999998 5554 4599999999999988 77889999999
Q ss_pred EEeCCcchHHHHHHHHHhCCc----------eEEEeCCCCCCC--CHHHHHHHHhccCCCCccEEEEEecCCCcccccc-
Q 017726 89 SFLIGQFSLLWIDQQQRLNFN----------VDVVESDWGEGA--KLDVLASKLAADTAHTIKAICIVHNETATGVTNN- 155 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~~----------~~~v~~~~~~~~--d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~- 155 (367)
+..|.|++.. ..++..|.+ ++.++.+.++.+ |+++. +++++|++++|+||||.+++
T Consensus 160 ~~~p~~~~~~--~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~l~~p~NPtG~~~~~ 228 (449)
T 3qgu_A 160 VQDPSYPVYV--DTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA---------KRTDIIFFCSPNNPTGAAATR 228 (449)
T ss_dssp EEESCCTHHH--HHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC---------CCCSEEEEESSCTTTCCCCCH
T ss_pred EcCCCChhHH--HHHHHcCCcccccccccceeEEEecccccCCcCChhHc---------CCCCEEEEeCCCCCCCCcCCH
Confidence 9999888754 556778888 999998764333 33221 36799999999999999987
Q ss_pred --HHHHHHHHHhcCCCcEEEEeeeeccCcee----ecccc----ccceEEEecCCCccc-CCCcceeeeeCHHHHHHhcc
Q 017726 156 --LSKVRKLLDEYRHPALFLVDGVSSICAID----FRMDE----WGIDVALTGSQKALS-LPTGMGIVCASPKALEASKT 224 (367)
Q Consensus 156 --~~~i~~~~~~~~~~~~vi~D~~~~~~~~~----~~~~~----~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~ 224 (367)
+++|.++|++ +|+++|+|++|+.+... .++.. .+.++++.|++|+++ ++.++|++++++++++..
T Consensus 229 ~~l~~l~~l~~~--~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~-- 304 (449)
T 3qgu_A 229 AQLTELVNFARK--NGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYAN-- 304 (449)
T ss_dssp HHHHHHHHHHHH--HTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTTCBCTT--
T ss_pred HHHHHHHHHHHH--CCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecCHHHHhhh--
Confidence 6678888989 99999999999864321 12211 256799999999995 334479999988765420
Q ss_pred CCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccC
Q 017726 225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWF 304 (367)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 304 (367)
...+........... .++++...+.+..+++.......++++++++.++++++.+.|+++|+.+..+ .
T Consensus 305 ------~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~ 372 (449)
T 3qgu_A 305 ------GEPVHADWNRVMTTC--FNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMGFSVYGG----D 372 (449)
T ss_dssp ------SCBHHHHHHHHHHHS--CCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEES----S
T ss_pred ------hhhHHHHHHHHhhcc--cCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeCC----C
Confidence 000000111111111 2235555555555555442223377889999999999999999999888765 3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 305 SDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 305 ~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~--~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
.+.++++.++ +.+..++++.|.+++||.+.+|.. +..++++||++....++.+...+.|.
T Consensus 373 ~~~~~~~~~~-~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~~~e~i~~~l~~l~ 434 (449)
T 3qgu_A 373 DAPYIWVGFP-GKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFGSRENILEAVRRFK 434 (449)
T ss_dssp SSSEEEEECT-TSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHH
T ss_pred CeeEEEEECC-CCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecCCHHHHHHHHHHHH
Confidence 4667888886 778889999998877999998844 33457899996554444444444443
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-30 Score=233.03 Aligned_cols=326 Identities=13% Similarity=0.093 Sum_probs=227.8
Q ss_pred CCCCCcccccCCCCCChHHHHHHHccCCCCC-CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCC
Q 017726 5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSP 83 (367)
Q Consensus 5 ~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~ 83 (367)
..|..+++....+.+.++.+++++.+....+ ......+..+++++++++++|.+++ ++++++||++|+..++.+++.+
T Consensus 11 ~~p~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~g~~~~-~v~~~~g~t~a~~~~~~~~~~~ 89 (359)
T 1svv_A 11 AKPKPYSFVNDYSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDA-DVHFISGGTQTNLIACSLALRP 89 (359)
T ss_dssp ----CEECSCSCSSCCCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHHTCTTS-EEEEESCHHHHHHHHHHHHCCT
T ss_pred CCCeeEEecCCCcCCCCHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCCCCc-cEEEeCCchHHHHHHHHHHhCC
Confidence 3455566666666678899999999866532 2233457788999999999997654 5999999999999999999999
Q ss_pred CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccC---CCCccEEEEEecCCCcccccc---HH
Q 017726 84 GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT---AHTIKAICIVHNETATGVTNN---LS 157 (367)
Q Consensus 84 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~---~~~~~lv~~~~~~n~tG~~~~---~~ 157 (367)
||+|+++.++|++......++..|.+++.++.+ ++.+|+++++++++++. ..++++|+++++ ||||.++| ++
T Consensus 90 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~ 167 (359)
T 1svv_A 90 WEAVIATQLGHISTHETGAIEATGHKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELE 167 (359)
T ss_dssp TEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHH
T ss_pred CCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHH
Confidence 999999999888764212367789999999986 77899999999998630 013799999998 79999998 88
Q ss_pred HHHHHHHhcCCCcEEEEeeee---ccCceeecccc----ccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCce
Q 017726 158 KVRKLLDEYRHPALFLVDGVS---SICAIDFRMDE----WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV 230 (367)
Q Consensus 158 ~i~~~~~~~~~~~~vi~D~~~---~~~~~~~~~~~----~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~ 230 (367)
+|.++|++ +|+++|+|++| +.+..+.+... ...|+++.+++|+. ++.|+|++++++++++++....
T Consensus 168 ~i~~~~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g-~~~~~g~l~~~~~~~~~~~~~~---- 240 (359)
T 1svv_A 168 DISASCKE--HGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAG-GMFGEALIILNDALKPNARHLI---- 240 (359)
T ss_dssp HHHHHHHH--HTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTT-CSSCEEEEECSGGGCTTHHHHH----
T ss_pred HHHHHHHH--hCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCC-CCCceEEEEEcccHHHHHHHHH----
Confidence 89999999 99999999998 44443332221 35789999999974 6788899999988765554210
Q ss_pred eechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEE
Q 017726 231 FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTA 310 (367)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 310 (367)
...+. .+..+.....++. ..+.+.+++++++++.++++++.+.|+..|+++..+ ...++++
T Consensus 241 ----------~~~~~--~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~----~~~~~~~ 301 (359)
T 1svv_A 241 ----------KQRGA--LMAKGWLLGIQFE---VLMKDNLFFELGAHSNKMAAILKAGLEACGIRLAWP----SASNQLF 301 (359)
T ss_dssp ----------HHTTC--CCTTTHHHHHHHH---HHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSC----CSSSEEC
T ss_pred ----------hcCCc--ccccchhhHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHhccCCeEEccC----CccceEE
Confidence 00111 1111221112222 233334467888999999999999994348887765 2344555
Q ss_pred EEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHH--HHHHhhhh
Q 017726 311 VIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV--MFNFQLLF 365 (367)
Q Consensus 311 ~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~--~~~~~~l~ 365 (367)
+.++ .++.++|.+++||.+.+.. +..++++|+++....+++ +...++|+
T Consensus 302 ~~~~-----~~~~~~l~~~~gi~v~~~~-~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 352 (359)
T 1svv_A 302 PILE-----NTMIAELNNDFDMYTVEPL-KDGTCIMRLCTSWATEEKECHRFVEVLK 352 (359)
T ss_dssp BEEE-----HHHHHHHTTTEECEEEEEE-TTTEEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred EEcC-----HHHHHHHHHhcCEEEEecc-cCCCceEEEEccCcCCHHHHHHHHHHHH
Confidence 6553 5888999766699883211 223467999865545444 33344443
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-29 Score=231.51 Aligned_cols=282 Identities=17% Similarity=0.101 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHHHhcCCC--------CceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEE
Q 017726 42 ALTKTLLEDIKKIFKTTS--------GTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVV 113 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~--------~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v 113 (367)
+..+++.+.+++.+|.+. +++|++|+|+++++..++.+++.+||+|++..|.|++.. ..++..|.+++.+
T Consensus 82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~v 159 (425)
T 2r2n_A 82 ELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTL--QSLHPLGCNIINV 159 (425)
T ss_dssp HHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHH--HHHGGGTCEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHH--HHHHHcCCEEEEe
Confidence 445555555555568764 357999999999999999999999999999999887743 5577889999999
Q ss_pred eCCCCCCCCHHHHHHHHhccC--------CCCccEEEE-EecCCCccccccHH---HHHHHHHhcCCCcEEEEeeeeccC
Q 017726 114 ESDWGEGAKLDVLASKLAADT--------AHTIKAICI-VHNETATGVTNNLS---KVRKLLDEYRHPALFLVDGVSSIC 181 (367)
Q Consensus 114 ~~~~~~~~d~e~l~~~i~~~~--------~~~~~lv~~-~~~~n~tG~~~~~~---~i~~~~~~~~~~~~vi~D~~~~~~ 181 (367)
+.+.+ .+|++++++++++.. .+++++|++ ++++||||.++|.+ +|.++|++ +|++||+|++|+.+
T Consensus 160 ~~~~~-~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~--~~~~li~De~~~~~ 236 (425)
T 2r2n_A 160 ASDES-GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARK--YDFLIIEDDPYYFL 236 (425)
T ss_dssp CEETT-EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHH--TTCEEEEECTTGGG
T ss_pred CcCCC-CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHH--cCCEEEEECCcccc
Confidence 98654 489999999997311 135788876 68999999999865 89999999 99999999998742
Q ss_pred ce----eec---cccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHH
Q 017726 182 AI----DFR---MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQ 254 (367)
Q Consensus 182 ~~----~~~---~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (367)
.. ..+ +...+.++++.|+||+++...++|++++++++++++.... ... .++++..
T Consensus 237 ~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~~l~~~~----------------~~~--~~~~~~~ 298 (425)
T 2r2n_A 237 QFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIERVILHI----------------QVS--TLHPSTF 298 (425)
T ss_dssp BSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHHHHHHHH----------------HTT--TCSSCHH
T ss_pred cCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHHHHHHHHHHH----------------HHh--cCCCCHH
Confidence 21 111 2223467999999999952223699999999888776321 011 2346666
Q ss_pred HHHHHHHHHHHHHH----hChHHHHHHHHHHHHHHHHHHHHc--CC-ccccCCCccCCCceEEEEcCCCCCHHH-HHHHH
Q 017726 255 LLYGLRAALDLIFE----EGLENVIERHRRLGKATRLAVEAW--GL-KNCTQKEEWFSDTVTAVIVPSHINSSE-IVRRA 326 (367)
Q Consensus 255 ~~~al~~al~~~~~----~g~~~~~~~~~~~~~~l~~~L~~~--g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~L 326 (367)
...++..+++.+.+ ..+++++++++++++++.+.|++. |+ .+..+ ..+.+++++++...+..+ +.+.|
T Consensus 299 ~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p----~~g~~~~~~~~~~~~~~~~~~~~l 374 (425)
T 2r2n_A 299 NQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVP----AAGMFLWIKVKGINDVKELIEEKA 374 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCC----SBSSEEEEEETTCSCCHHHHHTHH
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCC----CceEEEEEEeCCCCCHHHHHHHHH
Confidence 66666667765422 226777888999999999999984 66 34444 355678888876556666 46667
Q ss_pred HhhCCeEEccCCCCC-----CCcEEEEeec
Q 017726 327 WQRYNLSLGLGLNKV-----AGKVFRIGHL 351 (367)
Q Consensus 327 ~~~~gv~v~~g~~~~-----~~~~iRi~~~ 351 (367)
. ++||.+.+|..+. ..+++||++.
T Consensus 375 ~-~~gv~v~pg~~f~~~~~~~~~~iRis~~ 403 (425)
T 2r2n_A 375 V-KMGVLMLPGNAFYVDSSAPSPYLRASFS 403 (425)
T ss_dssp H-HTTEECEEGGGGSSSTTSCCCEEEEECS
T ss_pred H-HCCcEEechhhhcCCCCCCCCEEEEEeC
Confidence 5 5699999885432 2468999976
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-30 Score=241.79 Aligned_cols=335 Identities=10% Similarity=-0.027 Sum_probs=233.0
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCC---CC--CCcHHHHHHHHHHHHHHHhcCCCCc---------eEEecCChhHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNED---YR--SPAVPALTKTLLEDIKKIFKTTSGT---------PFLIPTTGTGAW 73 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~~~~~la~~~~~~~~~---------~v~~~~ggt~al 73 (367)
++.+.+.|++...|..+.+.+....+. .+ ++.......++.+++++++|.+... ..++|+|||+|+
T Consensus 79 p~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an 158 (481)
T 4e1o_A 79 PHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSEST 158 (481)
T ss_dssp TTBCSSSCCCCCHHHHHHHHHHHHHCCCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHH
T ss_pred CCeeEeCCCCCCHHHHHHHHHHHHhCcccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHH
Confidence 466777888777776666655553322 11 3445667777888889999987532 578999999999
Q ss_pred HHHHHccC-------------------CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccC
Q 017726 74 ESALTNTL-------------------SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT 134 (367)
Q Consensus 74 ~~~~~~~~-------------------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~ 134 (367)
..++.+.. .+++.|+++...|++. .+.+...|.+++.++.+.++.+|+++|+++|++..
T Consensus 159 ~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~--~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~ 236 (481)
T 4e1o_A 159 LIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSV--EKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDK 236 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHH--HHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHH--HHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHH
Confidence 88776532 1567888888888874 35567789999999998889999999999998642
Q ss_pred C--CCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeec---cccc---cceEEEecCCCcccCC
Q 017726 135 A--HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR---MDEW---GIDVALTGSQKALSLP 206 (367)
Q Consensus 135 ~--~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~---~~~~---~~d~~~~s~~K~~~g~ 206 (367)
. ..+.+|++++++|++|.+.|+++|.++|++ +|+++++|++++.+....+ .... .+|++++++|||+++|
T Consensus 237 ~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~--~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p 314 (481)
T 4e1o_A 237 QRGLVPVFVCATLGTTGVCAFDCLSELGPICAR--EGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVH 314 (481)
T ss_dssp HTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH--HTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC
T ss_pred hCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHH--cCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCC
Confidence 1 126889999999999999999999999999 9999999999987643221 1111 3599999999999999
Q ss_pred CcceeeeeCHHH-HHHhccCCCCceeechHHHHHHhhcCCc-cCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Q 017726 207 TGMGIVCASPKA-LEASKTAKSVRVFFDWKDYIKFYNLGTF-WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKA 284 (367)
Q Consensus 207 ~g~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~ 284 (367)
.|+|+++++++. +.+..... ..+...... ........+ ...+.. .....+++++..+..+|++++.++..+++++
T Consensus 315 ~g~g~l~~~~~~~l~~~~~~~-~~yl~~~~~-~~~~~~~~~~~~~~r~-~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~ 391 (481)
T 4e1o_A 315 FDCTGFWVKDKYKLQQTFSVN-PIYLRHANS-GVATDFMHWQIPLSRR-FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKY 391 (481)
T ss_dssp SSCEEEEESBHHHHHTTTCCC-CGGGCCTTT-TTSCCGGGGSSSSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEeCHHHHHHHhcCC-chhccCccc-CCCCCcccccccCCCC-ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999998887664 23222111 111110000 000000000 011111 2336788888888888899999999999999
Q ss_pred HHHHHHHc-CCccccCCCccCCCceEEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCC
Q 017726 285 TRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHL 354 (367)
Q Consensus 285 l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~ 354 (367)
+.+.|++. |+++..+ ....+++|+++. +....++.++|.++..+.+.++.. ....++|+++.+..
T Consensus 392 l~~~L~~~~g~~~~~~----~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~g~~~lR~~~~~~~ 458 (481)
T 4e1o_A 392 FESLVRNDPSFEIPAK----RHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATI-QDKLIIRFTVTSQF 458 (481)
T ss_dssp HHHHHHTCTTEECCSC----CCSSEEEEEESSCHHHHHHHHHHHHHHCSSBCEEEEE-TTEEEEEEECCCTT
T ss_pred HHHHHhcCCCeEEecC----CceeEEEEEeCCchHHHHHHHHHHHhCCeEEEEeeEE-CCEEEEEEEeCCCC
Confidence 99999998 8888765 244578888832 223568899998773344444322 22356999977655
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-30 Score=237.83 Aligned_cols=314 Identities=11% Similarity=0.037 Sum_probs=217.9
Q ss_pred cccccCCCCC-ChHHHHHHHccCCCCC-------------CCCcHHHHHHHHHHHHHHHhc--------CCCCceEEecC
Q 017726 10 NHLFVPGPVH-IPDQVIRAMNRNNEDY-------------RSPAVPALTKTLLEDIKKIFK--------TTSGTPFLIPT 67 (367)
Q Consensus 10 ~~~~~~~p~~-~~~~v~~a~~~~~~~~-------------~~~~~~~~~~~~~~~la~~~~--------~~~~~~v~~~~ 67 (367)
.+.+.-+..+ ..+.+.+++.+..... ..|.......++++.++++++ ++. +++++++
T Consensus 40 ~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~-~~v~~~~ 118 (435)
T 3piu_A 40 IIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDP-NHLVLTA 118 (435)
T ss_dssp BEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCG-GGEEEEE
T ss_pred eEEeccccccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCH-HHEEEcC
Confidence 3334433333 3566667776654311 112222345688999999888 334 4599999
Q ss_pred ChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHH-HhCCceEEEeCCCC--CCCCHHHHHHHHhccC--CCCccEEE
Q 017726 68 TGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQ-RLNFNVDVVESDWG--EGAKLDVLASKLAADT--AHTIKAIC 142 (367)
Q Consensus 68 ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~--~~~~~lv~ 142 (367)
||++|+..++.+++.+||.|++..|.|.+.. ..+. ..|.+++.++.+.+ +.+|++++++++++.. ..++++|+
T Consensus 119 gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 196 (435)
T 3piu_A 119 GATSANETFIFCLADPGEAVLIPTPYYPGFD--RDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVL 196 (435)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEEESCCTTHH--HHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ChHHHHHHHHHHhcCCCCeEEECCCccccHH--HHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 9999999999999999999999999887753 3344 67999999998753 4589999999998520 03689999
Q ss_pred EEecCCCccccccH---HHHHHHHHhcCCCcEEEEeeeeccCcee----eccc----c---------ccceEEEecCCCc
Q 017726 143 IVHNETATGVTNNL---SKVRKLLDEYRHPALFLVDGVSSICAID----FRMD----E---------WGIDVALTGSQKA 202 (367)
Q Consensus 143 ~~~~~n~tG~~~~~---~~i~~~~~~~~~~~~vi~D~~~~~~~~~----~~~~----~---------~~~d~~~~s~~K~ 202 (367)
+++|+||||.+++. ++|.++|++ +|+++|+|++|+.+... .+.. . .+.++++.|++|.
T Consensus 197 i~~p~nptG~~~~~~~l~~l~~~~~~--~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~ 274 (435)
T 3piu_A 197 VTNPSNPLGTTMTRNELYLLLSFVED--KGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKD 274 (435)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHH--HTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSS
T ss_pred EcCCCCCCCCCCCHHHHHHHHHHHHH--cCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecc
Confidence 99999999999875 678888999 99999999999763221 1110 1 2345889999999
Q ss_pred cc-CCCcceeeee-CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH--HhChHHHHHHH
Q 017726 203 LS-LPTGMGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF--EEGLENVIERH 278 (367)
Q Consensus 203 ~~-g~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~--~~g~~~~~~~~ 278 (367)
++ ++.++|++++ ++++.+.+... .. .++.+.....++.+++.... +..+++.++++
T Consensus 275 ~g~~G~r~G~~~~~~~~~~~~~~~~------------------~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 334 (435)
T 3piu_A 275 LGLPGFRVGAIYSNDDMVVAAATKM------------------SS--FGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRL 334 (435)
T ss_dssp SCCGGGCEEEEEESCHHHHHHHHHH------------------GG--GSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred cCCCceeEEEEEeCCHHHHHHHHHH------------------hh--cCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 94 2233699998 45565555321 11 12244444444444444322 22356778889
Q ss_pred HHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCC------CHHHHHHHHHhhCCeEEccCCC--CCCCcEEEEee
Q 017726 279 RRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI------NSSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGH 350 (367)
Q Consensus 279 ~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~L~~~~gv~v~~g~~--~~~~~~iRi~~ 350 (367)
.++++++.+.|++.|+++..+ .++.++++.++... +..+++++|.+++||.+.+|.. +..++++||++
T Consensus 335 ~~~~~~l~~~L~~~g~~~~~~----~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~ 410 (435)
T 3piu_A 335 KQRQKKLVSGLQKSGISCLNG----NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCF 410 (435)
T ss_dssp HHHHHHHHHHHHTTTCEECCC----CSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEEC
T ss_pred HHHHHHHHHHHHhcCCcccCC----CeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEe
Confidence 999999999999888887765 45567888885432 3457889998777999998754 34467899997
Q ss_pred cC
Q 017726 351 LG 352 (367)
Q Consensus 351 ~~ 352 (367)
..
T Consensus 411 ~~ 412 (435)
T 3piu_A 411 AN 412 (435)
T ss_dssp SS
T ss_pred eC
Confidence 44
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=237.62 Aligned_cols=303 Identities=11% Similarity=0.017 Sum_probs=206.5
Q ss_pred CChHHHHHHHccCCCC-----CCCCcHHHHHHHHHHHHHHH----hcCC-CCceEEecCChhHHHHHHHHccCCCC-CeE
Q 017726 19 HIPDQVIRAMNRNNED-----YRSPAVPALTKTLLEDIKKI----FKTT-SGTPFLIPTTGTGAWESALTNTLSPG-DRI 87 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~la~~----~~~~-~~~~v~~~~ggt~al~~~~~~~~~~g-d~v 87 (367)
+.++.+.+++.+.... ...|.......++++.++++ +|.+ .+++|++|+|+++++..++.+++.+| |+|
T Consensus 48 ~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~~g~d~v 127 (398)
T 3ele_A 48 PAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEF 127 (398)
T ss_dssp CCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCSTTCEE
T ss_pred CCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcCCCCCEE
Confidence 3567777777764321 11121112223455555554 4543 33569999999999999999999999 999
Q ss_pred EEEeCCcchHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHH
Q 017726 88 ISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLL 163 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~ 163 (367)
++..|.|++.. ..++..|.+++.++.+. ++.+|+++++++++ +++++|++++|+||||.++| +++|.++|
T Consensus 128 l~~~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~----~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~ 201 (398)
T 3ele_A 128 ITIAPYFPEYK--VFVNAAGARLVEVPADTEHFQIDFDALEERIN----AHTRGVIINSPNNPSGTVYSEETIKKLSDLL 201 (398)
T ss_dssp EEESSCCTHHH--HHHHHTTCEEEEECCCTTTSSCCHHHHHHTCC----TTEEEEEECSSCTTTCCCCCHHHHHHHHHHH
T ss_pred EEeCCCchhhH--HHHHHcCCEEEEEecCCcCCcCCHHHHHHHhC----cCCCEEEEcCCCCCCCCCCCHHHHHHHHHHH
Confidence 99999887743 55778899999999875 46889999999987 46799999999999999998 45555777
Q ss_pred Hhc----CCCcEEEEeeeeccCce-----eeccccccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCCceeec
Q 017726 164 DEY----RHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFD 233 (367)
Q Consensus 164 ~~~----~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 233 (367)
++. ++|+++|+|++|+.+.. +......+.++++.|+||+++ ++.++|++++++++++...-
T Consensus 202 ~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~--------- 272 (398)
T 3ele_A 202 EKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAEL--------- 272 (398)
T ss_dssp HHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHH---------
T ss_pred HhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCccceeEEEEEcchhhhHHHH---------
Confidence 651 27999999999976332 222233457799999999995 33447999998875331100
Q ss_pred hHHHHHHhh-cCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEE
Q 017726 234 WKDYIKFYN-LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVI 312 (367)
Q Consensus 234 ~~~~~~~~~-~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~ 312 (367)
........ ... ..+++.....++. ..+.... .++++.++++++.+.|+++|+.+..+ .++.++++.
T Consensus 273 -~~~~~~~~~~~~--~~~~~~~~~~a~~---~~l~~~~---~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~~~~~~~ 339 (398)
T 3ele_A 273 -YAAVCGAGRALG--YVCAPSLFQKMIV---KCQGATG---DINAYKENRDLLYEGLTRIGYHCFKP----DGAFYMFVK 339 (398)
T ss_dssp -HHHHHHHHHHTT--CCCSCHHHHHHHT---TCTTCCC---CHHHHHHHHHHHHHHHHHHTCCEECC----SBSSEEEEE
T ss_pred -HHHHHHHhhhcc--ccCCCHHHHHHHH---HHhcCHH---HHHHHHHHHHHHHHHHHHcCCeecCC----CeeEEEEEE
Confidence 00000000 011 2234443222222 2222221 35678889999999999988888776 456668888
Q ss_pred cCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeec
Q 017726 313 VPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHL 351 (367)
Q Consensus 313 ~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~ 351 (367)
++. .+..++.+.|. ++||.+.+|..+..++++||++.
T Consensus 340 ~~~-~~~~~~~~~l~-~~gi~v~~g~~~~~~~~iRis~~ 376 (398)
T 3ele_A 340 ALE-DDSNAFCEKAK-EEDVLIVAADGFGCPGWVRISYC 376 (398)
T ss_dssp CSS-SCHHHHHHHHH-TTTEECEESGGGTCTTEEEEECC
T ss_pred cCC-CCHHHHHHHHH-HCCEEEeCccccCCCCeEEEEec
Confidence 853 47889999886 55999999876655679999975
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=227.22 Aligned_cols=292 Identities=12% Similarity=0.056 Sum_probs=217.6
Q ss_pred CCChHHHHHHHccCCC--C-CCCCcHHHHHHHHHHHHHHHhc---CCCCceEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 18 VHIPDQVIRAMNRNNE--D-YRSPAVPALTKTLLEDIKKIFK---TTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~--~-~~~~~~~~~~~~~~~~la~~~~---~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
.+.++.+++++.+... . +.++. ....++|+.++++++ .++ +++++++|+++++..++.++ ||+|+++
T Consensus 31 ~~~~~~v~~a~~~~~~~~~~~~y~~--~~~~~lr~~la~~~~~~~~~~-~~v~~~~G~~~al~~~~~~~---gd~Vl~~- 103 (335)
T 1uu1_A 31 FPFPEDLVDEVFRRLNSDALRIYYD--SPDEELIEKILSYLDTDFLSK-NNVSVGNGADEIIYVMMLMF---DRSVFFP- 103 (335)
T ss_dssp SCCCHHHHHHHHHTCCGGGGGSCCC--SSCHHHHHHHHHHHTCSSCCG-GGEEEESSHHHHHHHHHHHS---SEEEECS-
T ss_pred CCCCHHHHHHHHHHhhhhhhhcCCC--CchHHHHHHHHHHcCCCCCCH-HHEEEcCChHHHHHHHHHHh---CCcEEEC-
Confidence 4678999999988652 1 22222 136799999999999 664 45999999999999999887 8999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcE
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPAL 171 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~ 171 (367)
|.|++.. ..++..|.+++.++.+.++.+|++++ + ++++|++++|+||||.++|.+++.++++. .| +
T Consensus 104 p~y~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l-----~----~~~~v~l~~p~nptG~~~~~~~l~~l~~~--~~-~ 169 (335)
T 1uu1_A 104 PTYSCYR--IFAKAVGAKFLEVPLTKDLRIPEVNV-----G----EGDVVFIPNPNNPTGHVFEREEIERILKT--GA-F 169 (335)
T ss_dssp SSCHHHH--HHHHHHTCEEEECCCCTTSCCCCCCC-----C----TTEEEEEESSCTTTCCCCCHHHHHHHHHT--TC-E
T ss_pred CCcHHHH--HHHHHcCCeEEEeccCCCCCCCHHHc-----C----CCCEEEEeCCCCCCCCCCCHHHHHHHHHh--CC-E
Confidence 8877643 55677899999999877777888877 2 56999999999999999999999999998 68 8
Q ss_pred EEEeeeeccCce-e-ec-cccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCc
Q 017726 172 FLVDGVSSICAI-D-FR-MDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTF 246 (367)
Q Consensus 172 vi~D~~~~~~~~-~-~~-~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (367)
+|+|++|+.+.. + .+ ....+.++++.|+||+++ ++| +|++++++++++++.... .
T Consensus 170 li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~l~~~~-----------------~-- 229 (335)
T 1uu1_A 170 VALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFS-LAAQRVGYVVASEKFIDAYNRVR-----------------L-- 229 (335)
T ss_dssp EEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTT-CGGGCCEEEEECHHHHHHHHHHS-----------------C--
T ss_pred EEEECcchhhcchhHHHHhhhCCCEEEEecchhhcC-CcccCeEEEEeCHHHHHHHHHhc-----------------C--
Confidence 999999974221 1 22 223457899999999984 445 699999999888776431 1
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHH
Q 017726 247 WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRA 326 (367)
Q Consensus 247 ~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 326 (367)
+++++...+.++.++++.. ..+++.+++++++++++.+.|++.|+.+.++ .+.+++++++. .+..++.+.|
T Consensus 230 -~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-----~~~~~~~~~~~-~~~~~~~~~l 300 (335)
T 1uu1_A 230 -PFNVSYVSQMFAKVALDHR--EIFEERTKFIVEERERMKSALREMGYRITDS-----RGNFVFVFMEK-EEKERLLEHL 300 (335)
T ss_dssp -TTCSCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC-----CSSEEEEECCT-HHHHHHHHHH
T ss_pred -CCCcCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHCCcEEcCC-----CCeEEEEECCC-CCHHHHHHHH
Confidence 2356666556666666541 2367788899999999999999888766433 23467788753 4567899999
Q ss_pred HhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 327 WQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 327 ~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
.++ ||.+.+ .++++||++ +..++.+...+.|++
T Consensus 301 ~~~-gi~v~~-----~~~~iRis~-~~~~~i~~~~~~l~~ 333 (335)
T 1uu1_A 301 RTK-NVAVRS-----FREGVRITI-GKREENDMILRELEV 333 (335)
T ss_dssp HHH-TEEEEE-----ETTEEEEEC-CCHHHHHHHHHHHHC
T ss_pred HHC-CEEEEE-----CCCeEEEEe-CCHHHHHHHHHHHHh
Confidence 765 999987 246899996 433445555555544
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=234.99 Aligned_cols=326 Identities=13% Similarity=0.080 Sum_probs=213.8
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCCC--CC------c---H-HHHHHHHHHHHHHHhcCCCCc--eEEecCChhHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDYR--SP------A---V-PALTKTLLEDIKKIFKTTSGT--PFLIPTTGTGAWE 74 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~--~~------~---~-~~~~~~~~~~la~~~~~~~~~--~v~~~~ggt~al~ 74 (367)
+.++++|+|..++++|++++.....+.+ ++ . . ......+++++++++|.+.++ ..++++|||+|+.
T Consensus 55 ~~i~lias~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~ 134 (490)
T 2a7v_A 55 RGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANL 134 (490)
T ss_dssp HSEECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHH
T ss_pred cCceEECCCCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHH
Confidence 4578899999999999999998654322 11 1 1 122335669999999998743 2466679999999
Q ss_pred HHHHccCCCCCeEEEEeCCcchHHHH------HHHHHhCCceE--EEeCC-CCCCCCHHHHHHHHhccCCCCccEEEEEe
Q 017726 75 SALTNTLSPGDRIISFLIGQFSLLWI------DQQQRLNFNVD--VVESD-WGEGAKLDVLASKLAADTAHTIKAICIVH 145 (367)
Q Consensus 75 ~~~~~~~~~gd~vl~~~~~~~~~~~~------~~~~~~g~~~~--~v~~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~ 145 (367)
.++.++++|||+|++.++.|.++... ..+...|..+. .++.+ .++.+|++++++++.+ +++|+|+++.
T Consensus 135 ~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~---~~~klIi~~~ 211 (490)
T 2a7v_A 135 AVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARL---FRPRLIIAGT 211 (490)
T ss_dssp HHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHH---HCCSEEEECC
T ss_pred HHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhh---cCCcEEEEcC
Confidence 99999999999999999877553210 12233454433 34444 3578999999999975 3578998887
Q ss_pred cCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCCcceeeeeCHHHHH
Q 017726 146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALE 220 (367)
Q Consensus 146 ~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~ 220 (367)
++|| ...|+++|.++|++ +|+++++|++|..+.. +.++. ++|++++|+||++.||.| |+++++++++.
T Consensus 212 s~~~--~~~dl~~i~~ia~~--~g~~livD~Ah~~glv~~g~~~~~~~--~aDiv~~S~hK~l~Gp~G-G~i~~~~~~~~ 284 (490)
T 2a7v_A 212 SAYA--RLIDYARMREVCDE--VKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGARS-GLIFYRKGVKA 284 (490)
T ss_dssp SSCC--SCCCHHHHHHHHHH--TTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGCSCSC-EEEEEECSEEE
T ss_pred CCCC--CcccHHHHHHHHHH--cCCEEEEccccccccccCCcCCCCCC--CCCEEEECCcccCccccc-hheeeccchhc
Confidence 7776 46799999999999 9999999999865422 22332 689999999999988887 99988765210
Q ss_pred HhccCCCCceeechHHHHHH-hhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccC
Q 017726 221 ASKTAKSVRVFFDWKDYIKF-YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQ 299 (367)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 299 (367)
...........++...... ...+. .++++...++++.+|+......+.++..++..+++++|.+.|++.|+++..+
T Consensus 285 -~~~~~~~~~~~~l~~~i~~~~~~g~--qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G~~v~~~ 361 (490)
T 2a7v_A 285 -VDPKTGREIPYTFEDRINFAVFPSL--QGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSG 361 (490)
T ss_dssp -EETTTEEEEECCCHHHHHHHHTTTT--CCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGG
T ss_pred -ccccccchhhHHHHHHHHHHhcccC--CCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCcEEecC
Confidence 0000000000111111111 11111 2347777788888888877654467888899999999999999999988763
Q ss_pred CCccCCCceEEEEcC-CCCCHHHHHHHHHhhCCeEEccCC-----CCCCCcEEEEeec
Q 017726 300 KEEWFSDTVTAVIVP-SHINSSEIVRRAWQRYNLSLGLGL-----NKVAGKVFRIGHL 351 (367)
Q Consensus 300 ~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~gv~v~~g~-----~~~~~~~iRi~~~ 351 (367)
. ..++++++.+. .+.+..++.+.|. +.||.+..+. .+..++.||||..
T Consensus 362 ~---t~t~lv~vdl~~~g~~~~~~~~~L~-~~GI~v~~~~~p~d~~p~~~~~iRig~~ 415 (490)
T 2a7v_A 362 G---TDNHLVLVDLRPKGLDGARAERVLE-LVSITANKNTCPGDRSAITPGGLRLGAP 415 (490)
T ss_dssp S---CSSSEEEEECTTTTCCHHHHHHHHH-HTTEECEEECCTTCCCSSSCSEEEEESH
T ss_pred C---CCCeEEEEEeCCCCCCHHHHHHHHH-hCCeEEecCccCCCCCCCCCCceEeccc
Confidence 2 23457778874 3567888888885 5699997431 2344577999873
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-29 Score=230.48 Aligned_cols=304 Identities=10% Similarity=-0.024 Sum_probs=210.3
Q ss_pred CCCCChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhcC-CCCc---eEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 16 GPVHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKT-TSGT---PFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~-~~~~---~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
++.++++.+.+++.+.... ...|.......++|+.+++++.. ...+ ++++|+||++|+..++.+++++||+|+++
T Consensus 53 ~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~ 132 (418)
T 3rq1_A 53 GNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTEPGDEVLTA 132 (418)
T ss_dssp SCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhcCCCCEEEEC
Confidence 3788899999998875431 11222223356788888886622 1123 69999999999999999999999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCC-CCCCCCHHHHHHHHhccCCCCcc-EEEEEec-CCCccccccHHHHH---HHHH
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESD-WGEGAKLDVLASKLAADTAHTIK-AICIVHN-ETATGVTNNLSKVR---KLLD 164 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~e~l~~~i~~~~~~~~~-lv~~~~~-~n~tG~~~~~~~i~---~~~~ 164 (367)
.|.|.++. ..++..|.+++.++.+ .++.+|++++++++++...++++ ++++++| +||||.++|.+++. ++|+
T Consensus 133 ~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~ 210 (418)
T 3rq1_A 133 DWYWGAYR--VICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLK 210 (418)
T ss_dssp SSCCTHHH--HHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CCCchhHH--HHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 99877653 5578899999999984 45689999999999852001345 7889999 99999999866555 5555
Q ss_pred ------hcCCCcEEEEeeeeccCceee----c----cccccc---eEEEecCCCcccCCCc--ceeeee---CHHHHHHh
Q 017726 165 ------EYRHPALFLVDGVSSICAIDF----R----MDEWGI---DVALTGSQKALSLPTG--MGIVCA---SPKALEAS 222 (367)
Q Consensus 165 ------~~~~~~~vi~D~~~~~~~~~~----~----~~~~~~---d~~~~s~~K~~~g~~g--~g~~~~---~~~~~~~~ 222 (367)
+ +|+++|+|++|......- . ...... .+++.|+||.++ .+| +|++++ ++++++.+
T Consensus 211 ~~~~~~~--~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~-~~G~r~G~~~~~~~~~~~~~~~ 287 (418)
T 3rq1_A 211 DLVAIGR--NNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFT-MYGQRVGAMIGISDDEEIADEF 287 (418)
T ss_dssp HHHHTSS--CEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTT-CCSSCCEEEEEEESSHHHHHHH
T ss_pred HhhhccC--CCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCc-CcCCcceEEEEEeCCHHHHHHH
Confidence 6 999999999986433210 1 111112 378889999984 444 699998 89988877
Q ss_pred ccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH-----HhChHHHHHHHHHHHHHHHHHHHHcCCccc
Q 017726 223 KTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-----EEGLENVIERHRRLGKATRLAVEAWGLKNC 297 (367)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~-----~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~ 297 (367)
.... .....+. ...++.....++..++.... ...++++++++.++++++.+.|+++|+++.
T Consensus 288 ~~~~------------~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 353 (418)
T 3rq1_A 288 FEVN------------KSTSRAT--WSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPML 353 (418)
T ss_dssp HHHH------------HHHHHHH--TSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHH------------HHHHhhc--cCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 6421 0000011 11355554445554443221 111456678889999999999999888887
Q ss_pred cCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeec
Q 017726 298 TQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHL 351 (367)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~ 351 (367)
.+ .++.++++.++ +..++++.|. ++||.+.+| ++++||++.
T Consensus 354 ~~----~~~~~~~~~~~---~~~~~~~~l~-~~gi~v~~g-----~~~iRis~~ 394 (418)
T 3rq1_A 354 PY----RGGFFITIPTD---SANAICEELK-KEHIYVIAL-----ANGIRIAAC 394 (418)
T ss_dssp CC----CSSSEEEEECT---THHHHHHHHH-HTTEECEEC-----SSEEEEEGG
T ss_pred CC----CceEEEEcCCC---CHHHHHHHHH-hCCEEEecC-----CCCeEEEEe
Confidence 76 45556666653 6788998885 569999987 357999954
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=234.92 Aligned_cols=284 Identities=14% Similarity=0.133 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHhc--------CCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC
Q 017726 44 TKTLLEDIKKIFK--------TTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES 115 (367)
Q Consensus 44 ~~~~~~~la~~~~--------~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 115 (367)
..++++.++++++ .++ +++++++|+++++..++.+++.+||.|+++.|.|.+.. ..++...|++++.++.
T Consensus 85 ~~~lr~~la~~~~~~~g~~~~~~~-~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~-~~~~~~~g~~~~~v~~ 162 (428)
T 1iay_A 85 LPEFRKAIAKFMEKTRGGRVRFDP-ERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFN-RDLRWRTGVQLIPIHC 162 (428)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCCCT-TSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHH-HHTTTTTCCEEEEECC
T ss_pred cHHHHHHHHHHHHHhcCCCCCCCh-hhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchH-HHHHHhcCCEEEEeec
Confidence 5688888888887 444 45999999999999999999999999999999887753 2233467999999998
Q ss_pred CC--CCCCCHHHHHHHHhcc--CCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccCcee----
Q 017726 116 DW--GEGAKLDVLASKLAAD--TAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAID---- 184 (367)
Q Consensus 116 ~~--~~~~d~e~l~~~i~~~--~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~---- 184 (367)
+. ++.+|++++++++++. ..+++++|++++|+||||.++| +++|.++|++ +|+++|+|++|+.+...
T Consensus 163 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~--~~~~li~Dea~~~~~~~~~~~ 240 (428)
T 1iay_A 163 ESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQ--HNIHLVCDEIYAATVFDTPQF 240 (428)
T ss_dssp CTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHT--TTCEEEEECTTGGGCCSSSCC
T ss_pred CCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHH--CCeEEEEeccccccccCCCCc
Confidence 63 3468999999998752 1136899999999999999999 8889999999 99999999999863321
Q ss_pred ec---ccc------ccce--EEEecCCCcccCCCc--ceeeee-CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCC
Q 017726 185 FR---MDE------WGID--VALTGSQKALSLPTG--MGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT 250 (367)
Q Consensus 185 ~~---~~~------~~~d--~~~~s~~K~~~g~~g--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (367)
.+ ... .+.| +++.|+||+++ .+| +|++++ ++++++.+.... . .++
T Consensus 241 ~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g-~~Glr~G~~~~~~~~~~~~~~~~~-----------------~---~~~ 299 (428)
T 1iay_A 241 VSIAEILDEQEMTYCNKDLVHIVYSLSKDMG-LPGFRVGIIYSFNDDVVNCARKMS-----------------S---FGL 299 (428)
T ss_dssp CCHHHHHTSGGGTTSCTTSEEEEEESTTTSS-CGGGCEEEEEESCHHHHHHHHHHH-----------------T---TSC
T ss_pred cCHHHhccccccccCCCCcEEEEecchhhcC-CCCceEEEEEeCCHHHHHHHHHHH-----------------h---ccc
Confidence 11 111 1145 88999999994 445 599998 677777665310 1 223
Q ss_pred CcHHHHHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCC------CHHHH
Q 017726 251 PSIQLLYGLRAALDLIF--EEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI------NSSEI 322 (367)
Q Consensus 251 ~~~~~~~al~~al~~~~--~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l 322 (367)
.+.....++..+++... +..+++.++++.++++++.+.|+++|+++..+ ..+.++++++++.. +..++
T Consensus 300 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~l 375 (428)
T 1iay_A 300 VSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKN----NAGLFCWMDLRPLLRESTFDSEMSL 375 (428)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCC----SSSSEEEEECGGGCSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC----CeeEEEEEechhhcCCCchhHHHHH
Confidence 55544455555554321 12367788899999999999999988777654 35567788885321 34578
Q ss_pred HHHHHhhCCeEEccCCCCC--CCcEEEEeecCCCCHH
Q 017726 323 VRRAWQRYNLSLGLGLNKV--AGKVFRIGHLGHLNEV 357 (367)
Q Consensus 323 ~~~L~~~~gv~v~~g~~~~--~~~~iRi~~~~~~~~~ 357 (367)
.+.|.+++||.+.+|..+. .++++||++. ..+.+
T Consensus 376 ~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~e 411 (428)
T 1iay_A 376 WRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDG 411 (428)
T ss_dssp HHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHH
T ss_pred HHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-cCCHH
Confidence 8999877799999875432 2468999976 34443
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=235.37 Aligned_cols=324 Identities=11% Similarity=0.066 Sum_probs=229.8
Q ss_pred CCcccccCCCCCChHHHHHHHccC-----CCC-C-----CCC--------cHHHHHHHHHHHHHHHhcCCCCceEEecCC
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRN-----NED-Y-----RSP--------AVPALTKTLLEDIKKIFKTTSGTPFLIPTT 68 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~-----~~~-~-----~~~--------~~~~~~~~~~~~la~~~~~~~~~~v~~~~g 68 (367)
.++|++..+.++.+..|++++.+. ... . ... ......+++++++++++|++.. +++|+|
T Consensus 80 ~~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~--~~~t~g 157 (456)
T 2z67_A 80 TDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVH--AIATPI 157 (456)
T ss_dssp GGGCTTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCE--EEEESS
T ss_pred ccccccccccccccccccccccCccccccCCCccHHHHHHhhCcccccCcHHHHHHHHHHHHHHHHcCCCCC--EEEeCc
Confidence 457888888888888887776541 111 0 001 1445678899999999999863 899999
Q ss_pred hh-HHHHHHHHccCC--CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC---CCCCCCCHHHHHHHH-hccCCCCccEE
Q 017726 69 GT-GAWESALTNTLS--PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES---DWGEGAKLDVLASKL-AADTAHTIKAI 141 (367)
Q Consensus 69 gt-~al~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~---~~~~~~d~e~l~~~i-~~~~~~~~~lv 141 (367)
|| .++..++.++.. +++.|+++.++|.+. ...++..|++++.++. +.++.+|++++++++ ++....++.+|
T Consensus 158 ~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~--~~~~~~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v 235 (456)
T 2z67_A 158 STGMSISLCLSAARKKYGSNVVIYPYASHKSP--IKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCV 235 (456)
T ss_dssp CHHHHHHHHHHHHHHHHCCCEEEEECCCCHHH--HHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECCCcHHH--HHHHHHcCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEE
Confidence 99 566545544322 677788898877774 3567778999999887 566789999999999 43100256788
Q ss_pred EEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCce---eeccccc--cceEEEecCCCcccCCCcceeeee-C
Q 017726 142 CIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI---DFRMDEW--GIDVALTGSQKALSLPTGMGIVCA-S 215 (367)
Q Consensus 142 ~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~---~~~~~~~--~~d~~~~s~~K~~~g~~g~g~~~~-~ 215 (367)
+.++++|+||.+.|+++|.++|++ +|+++++|++|+.... +.+.... ++|++++|+||++.+|.|+|++++ +
T Consensus 236 v~~~~nn~tG~i~~l~~I~~la~~--~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~ 313 (456)
T 2z67_A 236 LSTLTFFPPRNSDDIVEIAKICEN--YDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTD 313 (456)
T ss_dssp EEESSCCTTBCCCCHHHHHHHHHH--HTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESC
T ss_pred EEeCCCCCCCCcCCHHHHHHHHHH--cCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcC
Confidence 899999999999999999999999 9999999998875543 2332222 789999999999888999999999 5
Q ss_pred HHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc---
Q 017726 216 PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--- 292 (367)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--- 292 (367)
+++++++.+... |. .+....+++.+++..+...|++++.++..++++++.+.|+++
T Consensus 314 ~~~~~~l~~~~~----------------g~-----~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 372 (456)
T 2z67_A 314 AEFIKEISLSYP----------------GR-----ASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKK 372 (456)
T ss_dssp HHHHHHHHTTSC----------------SC-----BCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCcCCC----------------CC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777643211 11 111124667778888877889999999999999999999987
Q ss_pred -CCccccCCCccCCCceEEEEcC-CCCCHHHHHHHHHhhCCe---EEc------cCCC--CCCCcEEEEeecCCCCH--H
Q 017726 293 -GLKNCTQKEEWFSDTVTAVIVP-SHINSSEIVRRAWQRYNL---SLG------LGLN--KVAGKVFRIGHLGHLNE--V 357 (367)
Q Consensus 293 -g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~gv---~v~------~g~~--~~~~~~iRi~~~~~~~~--~ 357 (367)
|+.+..+ . .+++|.+. ++ ...++.+.|.++ || -+. .|.. .....++|+++.-.++. .
T Consensus 373 ~g~~v~~~----~--~~v~~~~~~~~-~~~~l~~~L~~~-gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~~~t~eei 444 (456)
T 2z67_A 373 TGGKFLDV----E--SPIASCISVNS-DPVEIAAKLYNL-RVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDI 444 (456)
T ss_dssp SSCCBCCC----C--CSSEEEEECSS-CHHHHHHHHHHT-TEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHH
T ss_pred cCCEecCC----C--CeEEEEEeccc-HHHHHHHHHHHc-CCCcceEEeecCccccccccccCcchhhhhhhcCCCHHHH
Confidence 8776665 2 34556661 12 146899989765 65 332 1211 22346899997655554 4
Q ss_pred HHHHhhhhc
Q 017726 358 MFNFQLLFQ 366 (367)
Q Consensus 358 ~~~~~~l~~ 366 (367)
|.+.+.|++
T Consensus 445 d~~l~~L~~ 453 (456)
T 2z67_A 445 VNSVSKLEK 453 (456)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 555555554
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=232.14 Aligned_cols=312 Identities=15% Similarity=0.137 Sum_probs=223.2
Q ss_pred cccccCCCCCChHHHHHHHccCCC-CC-C---------C-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNNE-DY-R---------S-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL 77 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~~-~~-~---------~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~ 77 (367)
.+.+.++..+.++.+++++.+... .. . + +......+++|+++++++|.+. ..+++++|++|+..++
T Consensus 25 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~--~~i~~~sGt~a~~~a~ 102 (405)
T 2vi8_A 25 KIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEH--ANVQPHSGAQANMAVY 102 (405)
T ss_dssp SEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHHH
T ss_pred ceeeccCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCc--eEEEecCcHHHHHHHH
Confidence 345556666779999999998653 11 0 1 1122334457789999999874 3455566799999999
Q ss_pred HccCCCCCeEEEEeCCcchHHH-HHH--HHHhCCceEEEeCC-CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccc
Q 017726 78 TNTLSPGDRIISFLIGQFSLLW-IDQ--QQRLNFNVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT 153 (367)
Q Consensus 78 ~~~~~~gd~vl~~~~~~~~~~~-~~~--~~~~g~~~~~v~~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~ 153 (367)
.+++.+||.|+++.+.|.+... ... ....+.+++.++.+ .++.+|++++++++++ .++++|+++ ++| .|..
T Consensus 103 ~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~---~~~~~v~~~-~~~-~~~~ 177 (405)
T 2vi8_A 103 FTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARL---HRPKLIVAA-AAA-YPRI 177 (405)
T ss_dssp HHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH---HCCSEEEEC-CSS-CCSC
T ss_pred HHhcCCCCEEEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHh---cCCeEEEEe-CCC-CCcc
Confidence 9989999999999997765421 000 11123467777765 4567899999999985 156888763 444 3667
Q ss_pred ccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccc---cceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCce
Q 017726 154 NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW---GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV 230 (367)
Q Consensus 154 ~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~---~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~ 230 (367)
.++++|.++|++ +|+++|+|++|+.+....+.... ..|++++|+||+++|+.| |++++++++++++.....
T Consensus 178 ~~l~~i~~l~~~--~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~l~~~~~--- 251 (405)
T 2vi8_A 178 IDFAKFREIADE--VGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG-GMILCQEQFAKQIDKAIF--- 251 (405)
T ss_dssp CCHHHHHHHHHH--HTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC-EEEEECHHHHHHHHHHHT---
T ss_pred CCHHHHHHHHHH--cCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCC-eEEEEcHHHHHHHHhhhc---
Confidence 789999999999 99999999999864332221111 578999999999987888 999999988877653211
Q ss_pred eechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEE
Q 017726 231 FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTA 310 (367)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 310 (367)
.. ..++++...++++.++++.+.+.++++++++..++++++.+.|+++|+++..+. ..+.+++
T Consensus 252 ------------~~--~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~~~ 314 (405)
T 2vi8_A 252 ------------PG--IQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGG---TDNHLLL 314 (405)
T ss_dssp ------------TT--TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CSSSEEE
T ss_pred ------------cc--ccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeEecCC---CCceEEE
Confidence 01 123466777778888888876656888999999999999999999888877642 1345777
Q ss_pred EEcCC-CCCHHHHHHHHHhhCCeEEccCCC------CCCCcEEEEeecC
Q 017726 311 VIVPS-HINSSEIVRRAWQRYNLSLGLGLN------KVAGKVFRIGHLG 352 (367)
Q Consensus 311 ~~~~~-~~~~~~l~~~L~~~~gv~v~~g~~------~~~~~~iRi~~~~ 352 (367)
+.++. +.+..++.+.|.+ +||.+.+|.. +..++.+|+++..
T Consensus 315 ~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~~~~iRis~~~ 362 (405)
T 2vi8_A 315 VDLRPQQLTGKTAEKVLDE-VGITVNKNTIPYDPESPFVTSGIRIGTAA 362 (405)
T ss_dssp EECGGGTCCHHHHHHHHHH-HTEECEEECCTTCSSCTTTCSEEEEECHH
T ss_pred EEccCCCCCHHHHHHHHHH-cCceeccCcCccccCCCCCCCceEEeeee
Confidence 88753 4577889998865 5999998742 2234679999764
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=232.96 Aligned_cols=275 Identities=12% Similarity=0.107 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGA 121 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~ 121 (367)
....++++++++++|.+. .+++++|++++..++.+++.+||.|++..+.|.+.. ..++..|.+++.++. .
T Consensus 104 ~~~~~l~~~la~~~g~~~---~i~~~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~--~~~~~~g~~~~~~~~-----~ 173 (409)
T 3kki_A 104 YDKPMIEKRLAKFTGFDE---CLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLW--EGARYANAQAHPFMH-----N 173 (409)
T ss_dssp TTSCHHHHHHHHHHTCSE---EEEESCHHHHHHHHHHHHCCTTCEEEEETTSCHHHH--HHHHHTTCEEEEECT-----T
T ss_pred HHHHHHHHHHHHHhCCCe---EEEecchHHHHHHHHHHhcCCCCEEEECCCcCHHHH--HHHHHcCCeEEEecC-----C
Confidence 446689999999999764 355577789999999999999999999999877654 446677998887765 4
Q ss_pred CHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCcee---------eccccccc
Q 017726 122 KLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID---------FRMDEWGI 192 (367)
Q Consensus 122 d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~---------~~~~~~~~ 192 (367)
|+++++++++++ ++++|++++++||||.+.|+++|.++|++ +|+++|+|++|+.+... .+. ..++
T Consensus 174 d~~~le~~l~~~---~~~~vi~~~~~nptG~~~~l~~l~~la~~--~~~~li~De~~~~g~~g~~g~~~~~~~~~-~~~~ 247 (409)
T 3kki_A 174 NCDHLRMLIQRH---GPGIIVVDSIYSTLGTIAPLAELVNISKE--FGCALLVDESHSLGTHGPNGAGLLAELGL-TREV 247 (409)
T ss_dssp CHHHHHHHHHHH---CSCEEEEESBCTTTCCBCCHHHHHHHHHH--HTCEEEEECTTTTTTSSGGGCCHHHHHTC-GGGC
T ss_pred CHHHHHHHHHhc---CCeEEEECCCCCCCCCcCCHHHHHHHHHH--cCCEEEEECCccccccCCCCCcchhhcCC-CCCC
Confidence 899999999863 46999999999999999999999999999 99999999999864331 111 1257
Q ss_pred eEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChH
Q 017726 193 DVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLE 272 (367)
Q Consensus 193 d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~ 272 (367)
|+++.|++|+++++ | |++++++++++.+..... .+..+ .+.+...++++.++++.+.+. +
T Consensus 248 di~~~s~sK~~~~~-g-g~v~~~~~~~~~~~~~~~------------~~~~~----~~~~~~~~aa~~aal~~~~~~--~ 307 (409)
T 3kki_A 248 HFMTASLAKTFAYR-A-GAIWCNNEVNRCVPFISY------------PAIFS----STLLPYEAAGLETTLEIIESA--D 307 (409)
T ss_dssp SEEEEESSSTTCSS-C-EEEEESSSGGGTHHHHCH------------HHHHS----BCCCHHHHHHHHHHHHHHHHC--H
T ss_pred CEEEeecchhhCCC-c-eEEEECHHHHHHHHHhCc------------Ccccc----CCCcHHHHHHHHHHHHHHhcC--H
Confidence 89999999999644 4 999999887665543110 00001 135566667777788877664 6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC---CCCcEEEEe
Q 017726 273 NVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK---VAGKVFRIG 349 (367)
Q Consensus 273 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~---~~~~~iRi~ 349 (367)
++++++.++++++.+.|+++|+++.+ .+.++++.+++..+..++.+.|.++ ||.+.++..+ ....++||+
T Consensus 308 ~~~~~~~~~~~~l~~~L~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~L~~~-Gv~v~~~~~~~~~~~~~~iRi~ 380 (409)
T 3kki_A 308 NRRQHLDRMARKLRIGLSQLGLTIRS------ESQIIGLETGDERNTEKVRDYLESN-GVFGSVFCRPATSKNKNIIRLS 380 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCCC------SSSEEEEEEESHHHHHHHHHHHHHT-TEECEEECTTSSCTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccCC------CCCEEEEEeCCHHHHHHHHHHHHHC-CceEeeeCCCCcCCCCcEEEEE
Confidence 78889999999999999998877653 3346777775444466799999876 9999875432 234679999
Q ss_pred ecCCCCHHHH
Q 017726 350 HLGHLNEVMF 359 (367)
Q Consensus 350 ~~~~~~~~~~ 359 (367)
+....+++++
T Consensus 381 ~~~~~t~e~i 390 (409)
T 3kki_A 381 LNSDVNDEQI 390 (409)
T ss_dssp CCTTCCHHHH
T ss_pred ccCCCCHHHH
Confidence 8766655443
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=232.93 Aligned_cols=326 Identities=11% Similarity=0.054 Sum_probs=226.5
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeE
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRI 87 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~v 87 (367)
+...+..|++.+++++.+++.+.....+.+.......++++.++++++.+ .+++++|||+|+..++.++ +.+||+|
T Consensus 23 ~~~~l~~~~p~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~---~~i~~~~gt~al~~~l~~~~~~~gd~v 99 (391)
T 3dr4_A 23 DLPRISVAAPRLDGNERDYVLECMDTTWISSVGRFIVEFEKAFADYCGVK---HAIACNNGTTALHLALVAMGIGPGDEV 99 (391)
T ss_dssp -----CCCCCCCCSSHHHHHHHHHHHTCCSSCSHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHHTCCTTCEE
T ss_pred CCceeccCCCCCCHHHHHHHHHHHHcCCccCCChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHcCCCCcCEE
Confidence 44556667778888888888875443332223477889999999999976 3788899999999999988 8999999
Q ss_pred EEEeCCcchHHHHHHHHHhCCceEEEeCC-CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhc
Q 017726 88 ISFLIGQFSLLWIDQQQRLNFNVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY 166 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~ 166 (367)
+++.++|++.. ..++..|++++.++.+ .++.+|+++++++++ +++++|+ ++||||.+.|+++|.++|++
T Consensus 100 l~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~v~---~~n~tG~~~~~~~i~~l~~~- 169 (391)
T 3dr4_A 100 IVPSLTYIASA--NSVTYCGATPVLVDNDPRTFNLDAAKLEALIT----PRTKAIM---PVHLYGQICDMDPILEVARR- 169 (391)
T ss_dssp EEESSSCTHHH--HHHHHTTCEEEEECBCTTTCSBCGGGSGGGCC----TTEEEEC---CBCGGGCCCCHHHHHHHHHH-
T ss_pred EECCCchHHHH--HHHHHCCCEEEEEecCccccCcCHHHHHHhcC----CCceEEE---EECCCCChhhHHHHHHHHHH-
Confidence 99999988864 4567789999999988 467889999999887 4668877 46799999999999999999
Q ss_pred CCCcEEEEeeeeccCceeecc--ccccceEEEec--CCCcccCCCcceeeeeC-HHHHHHhccCCCCceeechHHHHHHh
Q 017726 167 RHPALFLVDGVSSICAIDFRM--DEWGIDVALTG--SQKALSLPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFY 241 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~~~~~--~~~~~d~~~~s--~~K~~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (367)
+|+++|+|++|+.+....+. ... .|+.++| ++|+++++. .|+++.+ +++.+++..........+. . ....
T Consensus 170 -~~~~li~D~a~~~g~~~~~~~~~~~-~di~~~S~s~~K~l~~g~-gg~~~~~~~~~~~~~~~~~~~g~~~~~-~-~~~~ 244 (391)
T 3dr4_A 170 -HNLLVIEDAAEAVGATYRGKKSGSL-GDCATFSFFGNAIITTGE-GGMITTNDDDLAAKMRLLRGQGMDPNR-R-YWFP 244 (391)
T ss_dssp -TTCEEEEECTTCTTCEETTEETTSS-SSEEEEECBTTSSSCCBS-CEEEEESCHHHHHHHHHHHBTTCCTTS-T-TCCS
T ss_pred -cCCEEEEECcccccceECCeeeccc-CCEEEEECCCCCcCCcCC-eEEEEECCHHHHHHHHHHHhcCCCCCC-c-cccc
Confidence 99999999999977654322 111 2555555 779997644 4777665 4465555432211100000 0 0000
Q ss_pred hcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccC---CCccCCCceEEEEcCC--C
Q 017726 242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQ---KEEWFSDTVTAVIVPS--H 316 (367)
Q Consensus 242 ~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~---~~~~~~~~~~~~~~~~--~ 316 (367)
..+. .+.. ..+.+++......+++++.++.+++++++.+.|++.|+.+..+ ......+.++.+.+++ +
T Consensus 245 ~~g~--~~~~-----~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 317 (391)
T 3dr4_A 245 IVGF--NYRM-----TNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEGLS 317 (391)
T ss_dssp SCCC--BCBC-----CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGGTTSEECCCCCTTSCCCCSSEEEEECSSCS
T ss_pred cccc--ccCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCcCCCCCCcceeEEEEEEECCccc
Confidence 0010 1112 2345555555556678888999999999999999887766554 2222344456777765 6
Q ss_pred CCHHHHHHHHHhhCCeEEccCCCCC--------------------CCcEEEEeecCCCCHHHHH
Q 017726 317 INSSEIVRRAWQRYNLSLGLGLNKV--------------------AGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 317 ~~~~~l~~~L~~~~gv~v~~g~~~~--------------------~~~~iRi~~~~~~~~~~~~ 360 (367)
.+.+++.+.|.++ ||.++++..+. ....+|++++...+++|+.
T Consensus 318 ~~~~~l~~~L~~~-GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~ 380 (391)
T 3dr4_A 318 TTRDQVIKDLDAL-GIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADID 380 (391)
T ss_dssp SCHHHHHHHHHHT-TCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHH
T ss_pred hhHHHHHHHHHHC-CCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHH
Confidence 6788999999765 99999875321 1246999988877766544
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-29 Score=230.62 Aligned_cols=304 Identities=16% Similarity=0.191 Sum_probs=219.0
Q ss_pred hHHHHHHHccCCCC-----C---CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEE
Q 017726 21 PDQVIRAMNRNNED-----Y---RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISF 90 (367)
Q Consensus 21 ~~~v~~a~~~~~~~-----~---~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~ 90 (367)
++.+.+++.+.... + ..+.......++++.+++++|.+ +++++++ |+.++..++..+ ..+||.|++.
T Consensus 62 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~--~~i~~~s-G~~a~~~~~~~l~~~~~gd~Vl~~ 138 (401)
T 2bwn_A 62 HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKE--AALVFSS-AYNANDATLSTLRVLFPGLIIYSD 138 (401)
T ss_dssp CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCS--EEEEESC-HHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCC--cEEEECC-cHHHHHHHHHHHhcCCCCCEEEEC
Confidence 44677777664221 1 12233467889999999999974 4577755 555777766554 3589999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCc
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPA 170 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~ 170 (367)
.+.|++.. ..++..|++++.++.+ |++++++++++...+++++|++++++||||.+.|+++|.++|++ +|+
T Consensus 139 ~~~~~~~~--~~~~~~g~~~~~v~~~-----d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~--~~~ 209 (401)
T 2bwn_A 139 SLNHASMI--EGIKRNAGPKRIFRHN-----DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEE--FGA 209 (401)
T ss_dssp TTCCHHHH--HHHHHSCCCEEEECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHH--HTC
T ss_pred chhhHHHH--HHHHHcCCeEEEEcCC-----CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHH--cCC
Confidence 99887754 3456789999999875 78999999875321367999999999999999999999999999 999
Q ss_pred EEEEeeeeccCcee-----e-cccc--ccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhh
Q 017726 171 LFLVDGVSSICAID-----F-RMDE--WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYN 242 (367)
Q Consensus 171 ~vi~D~~~~~~~~~-----~-~~~~--~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (367)
++|+|++|+.+... + .... ...|+++.|++|+++ .+| |+++.++++++.+..... ...+.
T Consensus 210 ~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~-~~G-G~~~~~~~~~~~l~~~~~----------~~~~~ 277 (401)
T 2bwn_A 210 LTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYG-VFG-GYIAASARMVDAVRSYAP----------GFIFS 277 (401)
T ss_dssp EEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTC-SCC-EEEEECHHHHHHHHHHCH----------HHHTS
T ss_pred EEEEeccccccccCCCCceeeeccCccccCcEEEeechhhcc-CCC-CEEecCHHHHHHHHHhCc----------Cceec
Confidence 99999999854321 1 0011 135899999999995 566 999999888776543110 00111
Q ss_pred cCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHH
Q 017726 243 LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEI 322 (367)
Q Consensus 243 ~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (367)
.++++ ..++++.++++.+.+.|++++++++.++++++.+.|+++|+++..+ .+ .++++.++++.+..++
T Consensus 278 -----~~~~~-~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~-~~~~~~~~~~~~~~~~ 346 (401)
T 2bwn_A 278 -----TSLPP-AIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDH----GS-HIVPVVIGDPVHTKAV 346 (401)
T ss_dssp -----BCCCH-HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC----SS-SCEEEECCCHHHHHHH
T ss_pred -----CCCCH-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCCCcccCC----CC-CeEEEEeCChHHHHHH
Confidence 22344 5667778888887776678899999999999999999888877764 33 3788888544556789
Q ss_pred HHHHHhhCCeEEccCCCCC-C-C-cEEEEeecCCCCHHHH
Q 017726 323 VRRAWQRYNLSLGLGLNKV-A-G-KVFRIGHLGHLNEVMF 359 (367)
Q Consensus 323 ~~~L~~~~gv~v~~g~~~~-~-~-~~iRi~~~~~~~~~~~ 359 (367)
.+.|.+++||.+.++..+. . + .++|+++....+++|+
T Consensus 347 ~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i 386 (401)
T 2bwn_A 347 SDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQI 386 (401)
T ss_dssp HHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHH
T ss_pred HHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHH
Confidence 9999755699998775432 1 2 5799998766655443
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=232.21 Aligned_cols=326 Identities=15% Similarity=0.096 Sum_probs=230.7
Q ss_pred CcccccCCCCCChHHHHHHHccCCCC---CCCC------c--HH-HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNED---YRSP------A--VP-ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESA 76 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~---~~~~------~--~~-~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~ 76 (367)
+.+.+..|..++++.+.+++.+.... +.++ + .. .....+++.+++++|.+. ..+++++|++|+..+
T Consensus 24 ~~i~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~--~~i~~~sGt~a~~~~ 101 (407)
T 2dkj_A 24 EGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAW--ANVQPHSGSQANMAV 101 (407)
T ss_dssp TSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHH
T ss_pred cceeeccCCCCCCHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCc--ceEEecchHHHHHHH
Confidence 45667777777799999999886532 1111 1 11 222235679999999874 235556678899999
Q ss_pred HHccCCCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeC--C-CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 77 LTNTLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVES--D-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 77 ~~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~--~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
+.+++.+||+|+++.+.|++.. ....++..|.++..++. + .++.+|++++++++++ +++++|++++|+|| .
T Consensus 102 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~---~~~~~v~~~~p~~~--~ 176 (407)
T 2dkj_A 102 YMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALE---HRPKVIVAGASAYP--R 176 (407)
T ss_dssp HHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHH---HCCSEEEECCSSCC--S
T ss_pred HHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhh---cCCeEEEEeccccC--C
Confidence 9988899999999999887652 01223334443344443 4 3567899999999974 25699999889987 6
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccc---cccceEEEecCCCcccCCCcceeeeeC-HHHHHHhccCCCC
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMD---EWGIDVALTGSQKALSLPTGMGIVCAS-PKALEASKTAKSV 228 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~---~~~~d~~~~s~~K~~~g~~g~g~~~~~-~~~~~~~~~~~~~ 228 (367)
..|+++|.++|++ +|+++|+|++|+.+....+.. ....|++++|+||+++|+.| |+++++ +++++++.....
T Consensus 177 ~~~l~~i~~l~~~--~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~l~~~~~- 252 (407)
T 2dkj_A 177 FWDFKAFREIADE--VGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRG-GLILSNDPELGKRIDKLIF- 252 (407)
T ss_dssp CCCHHHHHHHHHH--HTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSC-EEEEESCHHHHHHHHHHHT-
T ss_pred CCCHHHHHHHHHH--cCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCc-eEEEECCHHHHHHHHhhhc-
Confidence 7899999999999 999999999998633221110 01379999999999988876 999999 788877654211
Q ss_pred ceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCce
Q 017726 229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV 308 (367)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 308 (367)
.+ ..++++...++++.++++.+.+.++++++++..++++++.+.|++.|+++..+. ..+.+
T Consensus 253 --------------~~--~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~ 313 (407)
T 2dkj_A 253 --------------PG--IQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRGYRIVTGG---TDNHL 313 (407)
T ss_dssp --------------TT--TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CSSSE
T ss_pred --------------cc--ccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCceeecCC---CCceE
Confidence 01 123466666667778888766556888999999999999999999888776531 24457
Q ss_pred EEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCC------CCCcEEEEeec------CCCCHHHHHHhhhh
Q 017726 309 TAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNK------VAGKVFRIGHL------GHLNEVMFNFQLLF 365 (367)
Q Consensus 309 ~~~~~~~-~~~~~~l~~~L~~~~gv~v~~g~~~------~~~~~iRi~~~------~~~~~~~~~~~~l~ 365 (367)
+++.++. +.+..++.+.|. ++||.+.+|..+ ..++++|+++. ...++.+...++|.
T Consensus 314 ~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~ 382 (407)
T 2dkj_A 314 FLVDLRPKGLTGKEAEERLD-AVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELID 382 (407)
T ss_dssp EEEECGGGTCCHHHHHHHHH-HTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHH
T ss_pred EEEECcccCCCHHHHHHHHH-HcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHH
Confidence 7888853 457788999885 559999987532 23467999975 34445555555554
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-29 Score=235.57 Aligned_cols=336 Identities=10% Similarity=0.030 Sum_probs=225.5
Q ss_pred CcccccCCCCCChHHHHHHHccCCCC---CC---CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNED---YR---SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-- 80 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~---~~---~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-- 80 (367)
..|+.....++.++.+++++.....+ +. ++.......++++++++++|.++.+.+++|+|||+|+..++.+.
T Consensus 101 ~~yl~~~~~~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~ 180 (497)
T 2qma_A 101 PDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARD 180 (497)
T ss_dssp TTBCSSSCCCCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCeeEeCCCCCcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHH
Confidence 44566666667888888877553221 11 22344556677899999999976456999999999999887762
Q ss_pred --C---------CC------CC-eEEEEeCCcchHHHHHHHHHhCC---ceEEEeCCCCCCCCHHHHHHHHhccCCC--C
Q 017726 81 --L---------SP------GD-RIISFLIGQFSLLWIDQQQRLNF---NVDVVESDWGEGAKLDVLASKLAADTAH--T 137 (367)
Q Consensus 81 --~---------~~------gd-~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~e~l~~~i~~~~~~--~ 137 (367)
+ .+ |+ .|+++.+.|++.. ..++..|. +++.+|.+.++.+|+++|++++++.... +
T Consensus 181 ~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~--~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~ 258 (497)
T 2qma_A 181 WIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQ--KSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLI 258 (497)
T ss_dssp HHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHH--HHHHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCE
T ss_pred HHHHhhcccchhhcccccccCCeEEEECCCchHHHH--HHHHHcCCCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCc
Confidence 2 12 45 6888877888753 45666665 8999999888899999999999863111 2
Q ss_pred ccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeec----cccc-cceEEEecCCCcccCCCcceee
Q 017726 138 IKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR----MDEW-GIDVALTGSQKALSLPTGMGIV 212 (367)
Q Consensus 138 ~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~----~~~~-~~d~~~~s~~K~~~g~~g~g~~ 212 (367)
+.+|++++++|+||.+.|+++|.++|++ +|+++++|++|+.+..+.+ +... ++|++++|+||++++|.|+|++
T Consensus 259 ~~~vv~~~~~~~tG~~~~l~~I~~l~~~--~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l 336 (497)
T 2qma_A 259 PFAIVGTAGTTDHGAIDDLDFIADMAVK--HDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTISCGAL 336 (497)
T ss_dssp EEEEEEEBSCTTTCCBCCHHHHHHHHHH--HTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCSSCEEE
T ss_pred ceEEEEcCCCCCCCCCCCHHHHHHHHHH--cCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCcceEEE
Confidence 4488999999999999999999999999 9999999999988766544 2222 6799999999999999899999
Q ss_pred eeCHHH-HHHhccCCCCceeechHHH--HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Q 017726 213 CASPKA-LEASKTAKSVRVFFDWKDY--IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAV 289 (367)
Q Consensus 213 ~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L 289 (367)
+++++. ++.+. ....+...... ....... ...+... ..++++++++.+...|++++.++..++++++.+.|
T Consensus 337 ~~~~~~~~~~~~---~~~~yl~~~~~~~~~~~~~~--~~~~r~~-~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L 410 (497)
T 2qma_A 337 LVNDKSNFKFLL---HHADYLNREHDELPNLVDKS--IATTKRF-DALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMI 410 (497)
T ss_dssp EESCGGGGGGGC---C----------------------CCSCCC-THHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCHHHHHHhc---CCchhcCCccccCCCccccC--CCCCCch-hHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 987654 33222 11111100000 0000000 0000111 12456677777777778899999999999999999
Q ss_pred HHc-CCccccCCCccCCCceEEEEcCCC-CC----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEee-cCCCCHHHH
Q 017726 290 EAW-GLKNCTQKEEWFSDTVTAVIVPSH-IN----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGH-LGHLNEVMF 359 (367)
Q Consensus 290 ~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~-~~~~~~~~~ 359 (367)
++. +++++.+ ....+++|++... .+ ..++.+.|.++ |+.+.++.......++|+++ ....+.+|+
T Consensus 411 ~~~~~~~~~~~----~~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~-G~~~~~~~~~~g~~~lRis~~~~~~t~edi 482 (497)
T 2qma_A 411 RTNDQFELLAE----PSLSTVLFRATHETADLDELNKALRLEALTR-GIAVLGETIVDGKTALKFTILNPCLTTSDF 482 (497)
T ss_dssp HTCTTEEECSC----CSSSEEEEEECCSSSCHHHHHHHHHHHHHHH-TSCBCEEEEETTEEEEEEECCCTTCCHHHH
T ss_pred hhCCCeEEEcC----CCceEEEEEEcCCccCHHHHHHHHHHHHHhC-CCEEEEeeEECCEEEEEEEecCCCCCHHHH
Confidence 997 8887653 1234777887432 12 23566777655 88776532222235799997 334444433
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=224.93 Aligned_cols=316 Identities=11% Similarity=0.043 Sum_probs=218.7
Q ss_pred CCCChHHHHHHHccCCCCC-CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc---CCCCCeEEEEeC
Q 017726 17 PVHIPDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT---LSPGDRIISFLI 92 (367)
Q Consensus 17 p~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~---~~~gd~vl~~~~ 92 (367)
.+++++.+++++.+..... .++ .....++++.+++++|.+ ++++++||++|+..++.++ +.+||+|+++.+
T Consensus 8 ~~~~~~~v~~a~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~---~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~ 82 (375)
T 2fnu_A 8 EPCLDKEDKKAVLEVLNSKQLTQ--GKRSLLFEEALCEFLGVK---HALVFNSATSALLTLYRNFSEFSADRNEIITTPI 82 (375)
T ss_dssp CCCCCHHHHHHHHHHHTSSCCSS--SHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSS
T ss_pred CCCCCHHHHHHHHHHHHcCcccC--ChHHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCC
Confidence 4567888899988865432 233 356789999999999976 4899999999999999998 889999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEE
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALF 172 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~v 172 (367)
.|++.. ..++..|++++.++.+.++.+|+++++++++ +++++|+++++ ||.+.|+++|.++|++ +|+++
T Consensus 83 ~~~~~~--~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~---tG~~~~l~~i~~l~~~--~~~~l 151 (375)
T 2fnu_A 83 SFVATA--NMLLESGYTPVFAGIKNDGNIDELALEKLIN----ERTKAIVSVDY---AGKSVEVESVQKLCKK--HSLSF 151 (375)
T ss_dssp SCTHHH--HHHHHTTCEEEECCBCTTSSBCGGGSGGGCC----TTEEEEEEECG---GGCCCCHHHHHHHHHH--HTCEE
T ss_pred ccHhHH--HHHHHCCCEEEEeccCCCCCCCHHHHHhhcC----cCceEEEEeCC---cCCccCHHHHHHHHHH--cCCEE
Confidence 888864 3456789999999998777889999999887 46788888876 9999999999999999 99999
Q ss_pred EEeeeeccCceeec--ccccc-ceEEEecCCCcccCCCcceeeee-C-HHHHHHhccCCCCceeechHHHHHHhhcCCc-
Q 017726 173 LVDGVSSICAIDFR--MDEWG-IDVALTGSQKALSLPTGMGIVCA-S-PKALEASKTAKSVRVFFDWKDYIKFYNLGTF- 246 (367)
Q Consensus 173 i~D~~~~~~~~~~~--~~~~~-~d~~~~s~~K~~~g~~g~g~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 246 (367)
|+|++|+.+..+.. ....+ +++.++|+||++ ++ |+|++++ + +++++++......... +. ...+++.++.
T Consensus 152 i~D~a~~~~~~~~~~~~~~~~~i~~~s~s~~K~~-~~-g~g~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~ 226 (375)
T 2fnu_A 152 LSDSSHALGSEYQNKKVGGFALASVFSFHAIKPI-TT-AEGGAVVTNDSELHEKMKLFRSHGML-KK--DFFEGEVKSIG 226 (375)
T ss_dssp EEECTTCTTCEETTEETTSSSSEEEEECCTTSSS-CC-SSCEEEEESCHHHHHHHHHHTBTTEE-ES--SSSCEEESSCC
T ss_pred EEECccccCCeECCeeccccCCeEEEeCCCCCCc-cc-cCceEEEeCCHHHHHHHHHHHhcCCc-cc--ccccccccccc
Confidence 99999998765422 22222 334444455999 46 7888877 3 6677766543221110 00 0000111110
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCC-CccCCCceEEEEcCC-CC-CHHHH
Q 017726 247 WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQK-EEWFSDTVTAVIVPS-HI-NSSEI 322 (367)
Q Consensus 247 ~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~~~~~~~~~~~-~~-~~~~l 322 (367)
..+..+. +.+++......+++++.++.+++++++.+.|+++ |+.+..+. .......++++.++. +. +..++
T Consensus 227 ~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 301 (375)
T 2fnu_A 227 HNFRLNE-----IQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLI 301 (375)
T ss_dssp CBCCCCH-----HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHH
T ss_pred ccCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccccchHHHH
Confidence 0111222 2333333344567888999999999999999997 77766542 111233455666642 23 67789
Q ss_pred HHHHHhhCCeEEccCCCCC---------------------CCcEEEEeecCCCCHHHH
Q 017726 323 VRRAWQRYNLSLGLGLNKV---------------------AGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 323 ~~~L~~~~gv~v~~g~~~~---------------------~~~~iRi~~~~~~~~~~~ 359 (367)
.+.|.+ +||.++.++.+. ....+||++....+.+|+
T Consensus 302 ~~~L~~-~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i 358 (375)
T 2fnu_A 302 LESLHK-RGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESV 358 (375)
T ss_dssp HHHHHH-TTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHH
T ss_pred HHHHHH-CCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHH
Confidence 999965 499998543221 015799998776665443
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=228.41 Aligned_cols=310 Identities=11% Similarity=0.096 Sum_probs=215.8
Q ss_pred cccccCCCCCChHHHHHHHccCCCCCC-----------CCcH-HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNNEDYR-----------SPAV-PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL 77 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~~~~~-----------~~~~-~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~ 77 (367)
.+.+.+++.++++.+.+++.+...... +... ......+++.+++++|.+.. ++++ ++|++|+..++
T Consensus 27 ~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~-~sGt~a~~~~~ 104 (417)
T 3n0l_A 27 GLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFA-NVQP-NSGSQANQGVY 104 (417)
T ss_dssp SEECCTTCCCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE-ECCC-SSHHHHHHHHH
T ss_pred CeeeecccCCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCc-ceEe-ccHHHHHHHHH
Confidence 455677777889999999988652211 0111 24444677899999998653 3555 55699999999
Q ss_pred HccCCCCCeEEEEeCCcchHHH-HHHHHH--hCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc
Q 017726 78 TNTLSPGDRIISFLIGQFSLLW-IDQQQR--LNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN 154 (367)
Q Consensus 78 ~~~~~~gd~vl~~~~~~~~~~~-~~~~~~--~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~ 154 (367)
.+++.+||+|++..++|++... ...... .+..++.++.+.++.+|++++++++++ +++++|++++++| |.+.
T Consensus 105 ~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~~--G~~~ 179 (417)
T 3n0l_A 105 AALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKK---EKPKLIVCGASAY--ARVI 179 (417)
T ss_dssp HHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHH---HCCSEEEECCSSC--CSCC
T ss_pred HHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHh---cCCeEEEECCccc--CccC
Confidence 9999999999999998876531 112222 345566666776677999999999984 2569998888775 9999
Q ss_pred cHHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCCcceeeeeC-HHHHHHhccCCCC
Q 017726 155 NLSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCAS-PKALEASKTAKSV 228 (367)
Q Consensus 155 ~~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~-~~~~~~~~~~~~~ 228 (367)
|+++|.++|++ +|+++|+|++|..+.. +.+.. +.|++++|+||+++|+.| |+++++ +++.+.+.....
T Consensus 180 ~l~~i~~l~~~--~~~~li~Dea~~~g~~~~~~~~~~~~--~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~~~~~~~- 253 (417)
T 3n0l_A 180 DFAKFREIADE--IGAYLFADIAHIAGLVVAGEHPSPFP--YAHVVSSTTHKTLRGPRG-GIIMTNDEELAKKINSAIF- 253 (417)
T ss_dssp CHHHHHHHHHH--HTCEEEEECTTTHHHHHTTSSCCCTT--TCSEEEEESSTTTCSCSC-EEEEESCHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHH--cCCEEEEECccchhhhhcccCCCccc--cceEEEeeCccccCCCCe-eEEEECCHHHHHHHhhhhC-
Confidence 99999999999 9999999999765433 22222 479999999999987775 999998 787777653211
Q ss_pred ceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCce
Q 017726 229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV 308 (367)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 308 (367)
.+. ..+++...++++.+++....+.++++.+++..++++++.+.|++.|+.+.... ....+
T Consensus 254 --------------~~~--~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~ 314 (417)
T 3n0l_A 254 --------------PGI--QGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRKFKLVSDG---TDNHL 314 (417)
T ss_dssp --------------TTT--CSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CSSSE
T ss_pred --------------Ccc--cCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCceeccCC---CCceE
Confidence 111 23466666677777776655445788889999999999999999888776521 23345
Q ss_pred EEEEcC-CCCCHHHHHHHHHhhCCeEEccCCCC------CCCcEEEEeecC
Q 017726 309 TAVIVP-SHINSSEIVRRAWQRYNLSLGLGLNK------VAGKVFRIGHLG 352 (367)
Q Consensus 309 ~~~~~~-~~~~~~~l~~~L~~~~gv~v~~g~~~------~~~~~iRi~~~~ 352 (367)
+++.++ .+.+..++.+.|. ++||.+.++..+ .....+|+++..
T Consensus 315 ~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~ 364 (417)
T 3n0l_A 315 VLMSFLDREFSGKDADLALG-NAGITANKNTVPGEIRSPFITSGLRLGTPA 364 (417)
T ss_dssp EEEECTTSSSCHHHHHHHHH-HTTEECEECCCTTCCSCTTTCSEEEEECHH
T ss_pred EEEEcccCCCCHHHHHHHHH-HcCeEEeccccCCCCcccCCCCeeEecCHH
Confidence 667763 3457778888885 569999865322 234569998743
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-29 Score=225.52 Aligned_cols=312 Identities=10% Similarity=0.036 Sum_probs=217.5
Q ss_pred CCCCChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCc
Q 017726 16 GPVHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQ 94 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~ 94 (367)
.+.+.++.+++++.+.... ...+.......++++++++++| + +.++++++||++|+..++.+++.+||.|++..+.|
T Consensus 16 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~-~~~v~~~~~gt~a~~~al~~~~~~gd~vi~~~~~~ 93 (356)
T 1v72_A 16 NIAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFE-R-DVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASH 93 (356)
T ss_dssp GGCCCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHHT-S-CCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSH
T ss_pred CccCCCHHHHHHHHhhccCcccccccchHHHHHHHHHHHHhC-C-CCcEEEeCCccHHHHHHHHHhcCCCCEEEEcCccc
Confidence 3456788899999887543 2233334678899999999999 4 33589999999999999999889999999998877
Q ss_pred chHHHHHHHHHh--CCceEEEeCCCCCCCCHHHHHH-HHhcc---CCCCccEEEEEecCCCccccc---cHHHHHHHHHh
Q 017726 95 FSLLWIDQQQRL--NFNVDVVESDWGEGAKLDVLAS-KLAAD---TAHTIKAICIVHNETATGVTN---NLSKVRKLLDE 165 (367)
Q Consensus 95 ~~~~~~~~~~~~--g~~~~~v~~~~~~~~d~e~l~~-~i~~~---~~~~~~lv~~~~~~n~tG~~~---~~~~i~~~~~~ 165 (367)
++......+... |.+++.++.+ ++.+|++++++ ++++. ..+++++|++++|+| ||.++ ++++|.++|++
T Consensus 94 ~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~ 171 (356)
T 1v72_A 94 INNDECGAPEFFSNGAKLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKS 171 (356)
T ss_dssp HHHSSTTHHHHHTTSCEEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHH
T ss_pred hhhhhchHHHHHhCCcEEEEecCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHH
Confidence 664311114455 9999999875 47789999999 88741 002689999999876 99955 47889999999
Q ss_pred cCCCcEEEEeeeeccCc-----eeeccc--cccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHH
Q 017726 166 YRHPALFLVDGVSSICA-----IDFRMD--EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYI 238 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~-----~~~~~~--~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (367)
+|+++|+|++|..+. ...... ..+.|+++.|+||+ +++.|+|++++++++++++....
T Consensus 172 --~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~~~~~~~~~~~~~~~~------------ 236 (356)
T 1v72_A 172 --SSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAAEAIVLFNTSLATEMSYRR------------ 236 (356)
T ss_dssp --TTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSCEEEEESSGGGHHHHHHHH------------
T ss_pred --cCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCccEEEEECHHHHhhHHHHh------------
Confidence 999999999986431 111111 12578999999999 55776679988999887664210
Q ss_pred HHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCC
Q 017726 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHI 317 (367)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 317 (367)
...+. ...... .++..+++.+.+....+..++..++++++.+.|+++ |+++..+ ....+++++++
T Consensus 237 --~~~~~--~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~----~~~~~~~~~~~--- 302 (356)
T 1v72_A 237 --KRAGH--LSSKMR---FLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGG----TEANILFCRLD--- 302 (356)
T ss_dssp --HHTTC--CCSSTH---HHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESC----CCSSEEEEEEC---
T ss_pred --hccCc--hhhhHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccC----CCccEEEEEcC---
Confidence 01121 111122 233334444443335566778889999999999886 8877654 24456777774
Q ss_pred CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHH--HHHHhhhh
Q 017726 318 NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV--MFNFQLLF 365 (367)
Q Consensus 318 ~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~--~~~~~~l~ 365 (367)
.+++++|.+ +||.+.+|... ++++|+++....+.+ +...+.|+
T Consensus 303 --~~~~~~l~~-~gi~v~~g~~~--~~~iRi~~~~~~~~~~i~~~~~~l~ 347 (356)
T 1v72_A 303 --SAMIDALLK-AGFGFYHDRWG--PNVVRFVTSFATTAEDVDHLLNQVR 347 (356)
T ss_dssp --HHHHHHHHH-TTCBCBCSSSS--TTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred --HHHHHHHHh-cCeEEeccccC--CCeEEEEecCCCCHHHHHHHHHHHH
Confidence 378899965 49999987522 678999966555544 33344443
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=237.28 Aligned_cols=329 Identities=13% Similarity=0.049 Sum_probs=223.9
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCC-C----CCcHHHHHHHHHHHHHHHhcCCCC--------ceEEecCChhHHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDY-R----SPAVPALTKTLLEDIKKIFKTTSG--------TPFLIPTTGTGAWES 75 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~-~----~~~~~~~~~~~~~~la~~~~~~~~--------~~v~~~~ggt~al~~ 75 (367)
+.+.+.+++...+..+.+.+....+.. . ++.......++++++++++|.+.. ..+++|+|||+|+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~ 154 (486)
T 1js3_A 75 YFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLV 154 (486)
T ss_dssp TBCSSSCCCCCHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHH
T ss_pred CceEeCCCCCCHHHHHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHH
Confidence 455566776666666777776653321 1 223445666788889999999742 358999999999998
Q ss_pred HHHccCCC---------CC--------e--EEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCC-
Q 017726 76 ALTNTLSP---------GD--------R--IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA- 135 (367)
Q Consensus 76 ~~~~~~~~---------gd--------~--vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~- 135 (367)
++.+...+ || . |+++.+.|++. ...++..|++++.++++.++.+|+++|+++|++++.
T Consensus 155 al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~--~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~ 232 (486)
T 1js3_A 155 ALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSV--ERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAA 232 (486)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHH--HHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHHH--HHHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhC
Confidence 88654211 32 3 67788888764 466788899999999988889999999999986430
Q ss_pred -CCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeec-cc-----cccceEEEecCCCcccCCCc
Q 017726 136 -HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR-MD-----EWGIDVALTGSQKALSLPTG 208 (367)
Q Consensus 136 -~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~-~~-----~~~~d~~~~s~~K~~~g~~g 208 (367)
.++.+|++++++|++|.+.|+++|.++|++ +|+++++|++|+.+....+ .. ..++|++++++||++++|.|
T Consensus 233 g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~--~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~ 310 (486)
T 1js3_A 233 GLIPFFVVATLGTTSCCSFDNLLEVGPICHE--EDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFD 310 (486)
T ss_dssp TCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH--TTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSS
T ss_pred CCCceEEEEeCCCCCCCCCCCHHHHHHHHHH--cCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcc
Confidence 113489999999999999999999999999 9999999999987654332 11 12689999999999988889
Q ss_pred ceeeeeCHHH--HHHhccCCCCceeechHHH-----HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Q 017726 209 MGIVCASPKA--LEASKTAKSVRVFFDWKDY-----IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRL 281 (367)
Q Consensus 209 ~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~ 281 (367)
+|+++++++. .+.+.. ... +...... ......+ ...+.. ...+++++++..+...|++++.++..++
T Consensus 311 ~G~l~~~~~~~l~~~~~~--~~~-yl~~~~~~~~~~~~~~~~~--~~~~rr-~~~~~~~~al~~~g~~g~~~~~~~~~~~ 384 (486)
T 1js3_A 311 CSAMWVKRRTDLTGAFKL--DPV-YLKHSHQGSGLITDYRHWQ--LPLGRR-FRSLKMWFVFRMYGVKGLQAYIRKHVQL 384 (486)
T ss_dssp CEEEEESCHHHHHGGGC---------------CCSCCCGGGSS--SCSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCHHHHHHHhcC--Cch-hhCCCcccccCCCCccccC--CCCCCc-hhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999997653 233321 011 1100000 0000000 001111 1236778888888778899999999999
Q ss_pred HHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCC--HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCC
Q 017726 282 GKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHIN--SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH 353 (367)
Q Consensus 282 ~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~ 353 (367)
++++.+.|++. |+++..+ ....+++|+++ +.+ ..++.++|.++ |+.+..+.......++|+++...
T Consensus 385 a~~l~~~L~~~~~~~~~~~----~~~~~v~f~~~-~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~lRi~~~~~ 453 (486)
T 1js3_A 385 SHEFEAFVLQDPRFEVCAE----VTLGLVCFRLK-GSDGLNEALLERINSA-RKIHLVPCRLRGQFVLRFAICSR 453 (486)
T ss_dssp HHHHHHHHHHCTTEEECSC----CCSSEEEEEES-SCHHHHHHHHHHHHHH-TSCBCEEEEETTEEEEEEECCCT
T ss_pred HHHHHHHHhcCCCeEEeCC----CceeEEEEEec-ChHHHHHHHHHHHHhc-CCEEEEEEEECCEEEEEEEeCCC
Confidence 99999999998 8888763 12346778874 222 46788989766 65433221111235799997553
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=234.74 Aligned_cols=308 Identities=12% Similarity=0.080 Sum_probs=209.8
Q ss_pred CChHHHHHHHccCCC------CCCCCcHHHHHHHHHHHHHHHh----cCCCCceEEecCChhHHHHHHHHccCCCCCeEE
Q 017726 19 HIPDQVIRAMNRNNE------DYRSPAVPALTKTLLEDIKKIF----KTTSGTPFLIPTTGTGAWESALTNTLSPGDRII 88 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~------~~~~~~~~~~~~~~~~~la~~~----~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl 88 (367)
+.++.+++++.+... ...+|.......++++.+++++ +.++ ++|++++|+++++.. +.+++.+||.|+
T Consensus 69 ~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~-~~i~~t~G~~~al~~-l~~l~~~gd~Vl 146 (432)
T 3ei9_A 69 PIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGD-DDVFVSDGAKCDISR-LQVMFGSNVTIA 146 (432)
T ss_dssp CCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCG-GGEEEESCHHHHHHH-HHHHHCTTCCEE
T ss_pred CCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCc-ceEEECCChHHHHHH-HHHHcCCCCEEE
Confidence 567777777766422 1123333344568888898887 5554 459999999999987 466788999999
Q ss_pred EEeCCcchHHHHHHHHHhC------------CceEEEeCCCCC--CCCHHHHHHHHhccCCCCccEEEEEecCCCccccc
Q 017726 89 SFLIGQFSLLWIDQQQRLN------------FNVDVVESDWGE--GAKLDVLASKLAADTAHTIKAICIVHNETATGVTN 154 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~--~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~ 154 (367)
+..|.|++.. ..++..| .+++.++.+.+. ..|++. . +++++|++++|+||||.++
T Consensus 147 ~~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~----~~~~~v~l~~p~NPtG~~~ 215 (432)
T 3ei9_A 147 VQDPSYPAYV--DSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----V----GRTDIIFFCSPNNPTGAAA 215 (432)
T ss_dssp EEESCCTHHH--HHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----C----CCCSEEEEESSCTTTCCCC
T ss_pred EeCCCCHHHH--HHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-----C----CCCCEEEEeCCCCCCCCCC
Confidence 9999988764 3344455 367888876543 334332 1 4789999999999999998
Q ss_pred c---HHHHHHHHHhcCCCcEEEEeeeeccCcee---eccc----cccceEEEecCCCccc-CCCcceeeeeCHHH-----
Q 017726 155 N---LSKVRKLLDEYRHPALFLVDGVSSICAID---FRMD----EWGIDVALTGSQKALS-LPTGMGIVCASPKA----- 218 (367)
Q Consensus 155 ~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~---~~~~----~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~----- 218 (367)
+ +++|.++|++ +|+++|+|++|+.+... ..+. ..+.++++.|+||+++ .+.++|++++++++
T Consensus 216 ~~~~l~~l~~la~~--~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~ 293 (432)
T 3ei9_A 216 TREQLTQLVEFAKK--NGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDG 293 (432)
T ss_dssp CHHHHHHHHHHHHH--HTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTS
T ss_pred CHHHHHHHHHHHHH--cCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcch
Confidence 6 5567777998 99999999999854221 1111 1246799999999995 22337999998876
Q ss_pred ---HHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCc
Q 017726 219 ---LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLK 295 (367)
Q Consensus 219 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~ 295 (367)
++.+... .... .++++...+.+..+++.......++++++++.++++++.+.|+++|+.
T Consensus 294 ~~~~~~~~~~----------------~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 355 (432)
T 3ei9_A 294 FPVAKDFNRI----------------ICTC--FNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLGYD 355 (432)
T ss_dssp CBHHHHHHHH----------------HHHS--CCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHH----------------hccc--cCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCCce
Confidence 3333311 1011 223555544555545432222236788899999999999999999888
Q ss_pred cccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 296 NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
+..+ ..+.++++.++ +.+..++++.|.+++||.+.+|..+ ...+++||++....++.+...+.|
T Consensus 356 ~~~~----~~~~~~~~~~~-~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~rl 421 (432)
T 3ei9_A 356 VYGG----KNAPYVWVHFP-NQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENILEACRRF 421 (432)
T ss_dssp EEEC----SSSSEEEEECT-TSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHH
T ss_pred ecCC----CcceEEEEECC-CCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecCCHHHHHHHHHHH
Confidence 7765 24557888885 6678899999887779999988543 335789999755333333333333
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=233.52 Aligned_cols=316 Identities=9% Similarity=-0.016 Sum_probs=216.6
Q ss_pred CCcccccCCCCCCh-----HHHHHHH--ccCCCC----CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHH--H
Q 017726 8 GKNHLFVPGPVHIP-----DQVIRAM--NRNNED----YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAW--E 74 (367)
Q Consensus 8 ~~~~~~~~~p~~~~-----~~v~~a~--~~~~~~----~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al--~ 74 (367)
...+.|..|.+... +.+.+++ .+.... ...|.......++|+.++++++++++ +|++|+|+++++ .
T Consensus 33 ~~~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~-~i~~t~G~~~al~~~ 111 (427)
T 3ppl_A 33 NLKLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLGVPVE-QVLAGDASSLNIMFD 111 (427)
T ss_dssp CCCEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHTSCGG-GEEECSSCHHHHHHH
T ss_pred CceEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhCCCcc-eEEEeCCcHHHHHHH
Confidence 34567777655332 2345554 332221 12333334567999999999998765 599999999999 4
Q ss_pred HHHHccCC--C----------CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEE
Q 017726 75 SALTNTLS--P----------GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAIC 142 (367)
Q Consensus 75 ~~~~~~~~--~----------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~ 142 (367)
.++.+++. | ||+|++..|.|.++. ..++..|.+++.++.+.++ +|++++++++++ +++++|+
T Consensus 112 ~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~--~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~---~~~~~v~ 185 (427)
T 3ppl_A 112 VISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHF--SITERFGFEMISVPMNEDG-PDMDAVEELVKN---PQVKGMW 185 (427)
T ss_dssp HHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHH--HHHHHTTCEEEEEEEETTE-ECHHHHHHHTTS---TTEEEEE
T ss_pred HHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHH--HHHHHcCCEEEEeCCCCCC-CCHHHHHHHHhc---CCCeEEE
Confidence 77777665 6 899999999887753 5577899999999988765 899999999953 4779987
Q ss_pred EE-ecCCCccccccHH---HHHHHH-HhcCCCcEEEEeeeeccCce------eecc-------ccccceEEEecCCCccc
Q 017726 143 IV-HNETATGVTNNLS---KVRKLL-DEYRHPALFLVDGVSSICAI------DFRM-------DEWGIDVALTGSQKALS 204 (367)
Q Consensus 143 ~~-~~~n~tG~~~~~~---~i~~~~-~~~~~~~~vi~D~~~~~~~~------~~~~-------~~~~~d~~~~s~~K~~~ 204 (367)
++ +++||||.++|.+ +|.++| ++ +|++||+|++|+.... +.+. ...+.++++.|+||++.
T Consensus 186 ~~p~~~NPtG~~~~~~~~~~l~~~a~~~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 263 (427)
T 3ppl_A 186 VVPVFSNPTGFTVTEDVAKRLSAMETAA--PDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITL 263 (427)
T ss_dssp ECCSSCTTTCCCCCHHHHHHHHHCCCSS--TTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSC
T ss_pred ECCCCCCCCCccCCHHHHHHHHHHHhhc--CCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccC
Confidence 65 8899999999877 777777 77 9999999999875221 1111 13357899999999865
Q ss_pred CCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH--HhChHHHHHHHHHHH
Q 017726 205 LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF--EEGLENVIERHRRLG 282 (367)
Q Consensus 205 g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~--~~g~~~~~~~~~~~~ 282 (367)
++.++|++++++++++.+..... .. .+.++.....++..++.... +..+++.++.+.+++
T Consensus 264 ~G~r~G~~~~~~~l~~~~~~~~~---------------~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (427)
T 3ppl_A 264 AGAGVSFFLTSAENRKWYTGHAG---------------IR---GIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKF 325 (427)
T ss_dssp TTSSCEEEECCHHHHHHHHHHHH---------------HH---CSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred cCccEEEEEcCHHHHHHHHHHhh---------------cc---cCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHH
Confidence 45668999999998887753210 00 12344444444444444311 112566677777788
Q ss_pred HHHHHHHHHc-----CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEcc-CCCC-----CCCcEEEEeec
Q 017726 283 KATRLAVEAW-----GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGL-GLNK-----VAGKVFRIGHL 351 (367)
Q Consensus 283 ~~l~~~L~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~-g~~~-----~~~~~iRi~~~ 351 (367)
+.+.+.|++. ++.+..+ .++.+++++++.. +..++.+.|. ++||.+.+ |... ...+++||++.
T Consensus 326 ~~l~~~L~~~l~~~~~~~~~~p----~~g~~~~~~~~~~-~~~~~~~~l~-~~gv~v~~~g~~~~~~~~~~~~~~Ris~~ 399 (427)
T 3ppl_A 326 NKVLEILDSRLAEYGVAQWTVP----AGGYFISLDVVPG-TASRVAELAK-EAGIALTGAGSSYPLRQDPENKNLRLAPS 399 (427)
T ss_dssp HHHHHHHHHHHGGGTCCEECCC----SBSSCEEEECSTT-CHHHHHHHHH-HTTEECCCTTTTSGGGCCTTSCEEEECCS
T ss_pred HHHHHHHHHhcCCCCceEEeCC----CccEEEEEECCcc-hHHHHHHHHH-HCCCEEecCcCcCCCCCCCCCCeEEEECC
Confidence 8888777662 3555554 3566788998654 6788888886 55999998 4221 23578999974
Q ss_pred CCCCHH
Q 017726 352 GHLNEV 357 (367)
Q Consensus 352 ~~~~~~ 357 (367)
. .+.+
T Consensus 400 ~-~~~~ 404 (427)
T 3ppl_A 400 L-PPVE 404 (427)
T ss_dssp S-SCHH
T ss_pred C-CCHH
Confidence 4 3433
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-28 Score=221.90 Aligned_cols=305 Identities=12% Similarity=0.086 Sum_probs=204.1
Q ss_pred ChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH-
Q 017726 20 IPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL- 98 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~- 98 (367)
+++.+.+++.+.......+.......++++.+++++|.+ .+++++||++++.+++.+++.+||+|+++.+.|++..
T Consensus 16 p~~~~~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~---~~~~~~~gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~ 92 (347)
T 1jg8_A 16 PTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKE---AALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYE 92 (347)
T ss_dssp CCHHHHHHHHTCCCCCGGGTCCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSS
T ss_pred CCHHHHHHHhcCCCCCcccCCChHHHHHHHHHHHHhCCc---eEEEecCcHHHHHHHHHHhcCCCCEEEEcCcchhhhcc
Confidence 457788888765332222223356789999999999975 3678889999999989888899999999999876542
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccC--CCCccEEEEEecCCCc-cccccH---HHHHHHHHhcCCCcEE
Q 017726 99 WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT--AHTIKAICIVHNETAT-GVTNNL---SKVRKLLDEYRHPALF 172 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~--~~~~~lv~~~~~~n~t-G~~~~~---~~i~~~~~~~~~~~~v 172 (367)
....++..|++++.+ .++++.+|++++++++++.. .+++++|++++|+||| |.++|. ++|.++|++ +|+++
T Consensus 93 ~~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~--~~~~l 169 (347)
T 1jg8_A 93 VGAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKE--HGINV 169 (347)
T ss_dssp TTHHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHH--HTCEE
T ss_pred ccchhhccCeEEEEe-cCCCCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHH--CCCEE
Confidence 123466789999888 55566789999999997420 0268999999999999 999874 678899999 99999
Q ss_pred EEeeeeccCce---eeccc--cccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCcc
Q 017726 173 LVDGVSSICAI---DFRMD--EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFW 247 (367)
Q Consensus 173 i~D~~~~~~~~---~~~~~--~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (367)
++|++|..+.. ..+.. ..+.|.++.|+||+++++.| ++++.++++++++.... ..+ .++
T Consensus 170 i~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G-~~~~~~~~~~~~~~~~~------------~~~-~~~-- 233 (347)
T 1jg8_A 170 HIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVG-SVVVGDRDFIERARKAR------------KML-GGG-- 233 (347)
T ss_dssp EEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHH------------HHH-TCC--
T ss_pred EeehhhhhcchhhcCCChHHhcccccEEEEecccccCCCce-EEEEcCHHHHHHHHHHH------------HHc-CCc--
Confidence 99998754221 11111 12578888899999976543 46778888877654321 001 111
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC-CCCHHHHHHHH
Q 017726 248 PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS-HINSSEIVRRA 326 (367)
Q Consensus 248 ~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L 326 (367)
. ..+....++...+++. . .+.+ ++..++++++.+.|+++|+.+..+. ..+.+++++++. +.+..+++++|
T Consensus 234 ~-~~~~~~~~~~~~~l~~---~-~~~~-~~~~~~~~~l~~~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l 304 (347)
T 1jg8_A 234 M-RQAGVLAAAGIIALTK---M-VDRL-KEDHENARFLALKLKEIGYSVNPED---VKTNMVILRTDNLKVNAHGFIEAL 304 (347)
T ss_dssp C-SSTHHHHHHHHHHHHH---S-STTH-HHHHHHHHHHHHHHHHHTCBCCGGG---CCSSEEEEECTTSSSCHHHHHHHH
T ss_pred h-hHHHHHHHHHHHHHHH---H-HHHH-HHHHHHHHHHHHHHHhcCceeccCC---CcceEEEEEcccccCCHHHHHHHH
Confidence 0 1121111112223322 1 2222 2334577888999988776643211 233467888864 56788999999
Q ss_pred HhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 327 WQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 327 ~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
.++ ||.+.++. .+++|+++....+++++.
T Consensus 305 ~~~-gi~v~~~~----~~~iRl~~~~~~~~e~i~ 333 (347)
T 1jg8_A 305 RNS-GVLANAVS----DTEIRLVTHKDVSRNDIE 333 (347)
T ss_dssp HHH-TEECEEEE----TTEEEEECCTTSCHHHHH
T ss_pred HHC-CCEEecCC----CCeEEEEeCCCCCHHHHH
Confidence 755 99998642 357999976655555443
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=236.22 Aligned_cols=334 Identities=13% Similarity=0.032 Sum_probs=228.1
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCC---CC--CCcHHHHHHHHHHHHHHHhcCCCC--------ceEEecCChhHHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNED---YR--SPAVPALTKTLLEDIKKIFKTTSG--------TPFLIPTTGTGAWE 74 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~~~~~la~~~~~~~~--------~~v~~~~ggt~al~ 74 (367)
++.+.+.+++...+..+.+.+....+. .+ ++.......++.+++++++|.+.. ...++|+|||+++.
T Consensus 74 p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl 153 (475)
T 3k40_A 74 PKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTL 153 (475)
T ss_dssp TTBCCSSCCCCCHHHHHHHHHHHHHCCCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHH
T ss_pred cCceeeCCCCCcHHHHHHHHHHHHhCccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHH
Confidence 355666677776666655555543322 12 334556677788889999999853 15899999999998
Q ss_pred HHHHccC-------------------CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCC
Q 017726 75 SALTNTL-------------------SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA 135 (367)
Q Consensus 75 ~~~~~~~-------------------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~ 135 (367)
.++.+.. .+++.|+++...|++. .+.+...|++++.++++.++ +|+++|+++|++...
T Consensus 154 ~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~--~~~~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~~ 230 (475)
T 3k40_A 154 VALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSV--ERAGLLGGVKLRSVQSENHR-MRGAALEKAIEQDVA 230 (475)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHH--HHHHHHHTCEEEEECCBTTB-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHH--HHHHHHcCCceEEEECCCCC-cCHHHHHHHHHHHHH
Confidence 8776531 1345788888888874 35677789999999998888 999999999986421
Q ss_pred --CCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeec-----ccc-ccceEEEecCCCcccCCC
Q 017726 136 --HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR-----MDE-WGIDVALTGSQKALSLPT 207 (367)
Q Consensus 136 --~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~-----~~~-~~~d~~~~s~~K~~~g~~ 207 (367)
..+.+|++++++|++|.+.|+++|.++|++ +|+++++|++++.+....+ ... ..+|++++++|||+++|.
T Consensus 231 ~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~--~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~ 308 (475)
T 3k40_A 231 EGLIPFYAVVTLGTTNSCAFDYLDECGPVGNK--HNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNF 308 (475)
T ss_dssp TTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH--TTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS
T ss_pred CCCccEEEEEEecCCCCcCcCCHHHHHHHHHH--hCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCC
Confidence 126789999999999999999999999999 9999999999987643221 111 146999999999999999
Q ss_pred cceeeeeCHHH-HHHhccCCCCceeechHHHHHHhhcCCc-cCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Q 017726 208 GMGIVCASPKA-LEASKTAKSVRVFFDWKDYIKFYNLGTF-WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKAT 285 (367)
Q Consensus 208 g~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l 285 (367)
|+|+++++++. +.+..... ..++.............+ ...+.+ ...+.++++++.+..+|+++++++..++++++
T Consensus 309 g~g~l~~~~~~~l~~~~~~~--~~yl~~~~~~~~~~~~~~~~~~sr~-~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l 385 (475)
T 3k40_A 309 DCSAMWLKDPSWVVNAFNVD--PLYLKHDMQGSAPDYRHWQIPLGRR-FRALKLWFVLRLYGVENLQAHIRRHCNFAKQF 385 (475)
T ss_dssp SCEEEEESSGGGC-----------------------------CCCGG-GTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCHHHHHHHhcCC--ccccCCCcCCCCCCcccccccCCCc-ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999887653 22111111 111100000000000000 011111 23467888999988889999999999999999
Q ss_pred HHHHHHc-CCccccCCCccCCCceEEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCC
Q 017726 286 RLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHL 354 (367)
Q Consensus 286 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~ 354 (367)
.+.|++. |+++..+ ....+++|+++. +....++.++|.++.++.+.++.. ....++|+++.+..
T Consensus 386 ~~~L~~~~g~~l~~~----~~~~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~g~~~lR~~~~~~~ 451 (475)
T 3k40_A 386 GDLCVADSRFELAAE----INMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKI-KDVYFLRMAICSRF 451 (475)
T ss_dssp HHHHHHSTTEEESSC----CBTTEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEE-TTEEEEEEECCCTT
T ss_pred HHHHhcCCCEEEecC----CceEEEEEEeCCchHHHHHHHHHHHhCCcEEEEeeEE-CCEEEEEEEeCCCC
Confidence 9999998 8988775 234578888742 223568999998774445444332 22457999977654
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=229.85 Aligned_cols=325 Identities=13% Similarity=0.059 Sum_probs=222.5
Q ss_pred ccccCCC--CCChHHHHHHHcc--CCCC--CC----CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHc-
Q 017726 11 HLFVPGP--VHIPDQVIRAMNR--NNED--YR----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN- 79 (367)
Q Consensus 11 ~~~~~~p--~~~~~~v~~a~~~--~~~~--~~----~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~- 79 (367)
+++..|+ ...|+.+.+.+.+ .... .. +.+..+...++++++++++|.+.. ++++++|++.+++.+..+
T Consensus 67 ~~~~~g~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~-~i~~~~g~taa~ea~~~a~ 145 (438)
T 1wyu_A 67 AFLGGGVRSHHVPPVVQALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAGLEIA-NASMYDGATALAEGVLLAL 145 (438)
T ss_dssp CCCCSSCCCCCCCHHHHHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHHHHHHHTSSEE-CSCBSSHHHHHHHHHHHHH
T ss_pred cccCCCccCCcCcHHHHHHHhcchhhhcCCCCcchhhhhHHHHHHHHHHHHHHHhCCCcc-ceEEeCcHHHHHHHHHHHH
Confidence 4555666 4567766444422 1111 11 233557788999999999999754 478889999443333322
Q ss_pred cCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHH
Q 017726 80 TLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLS 157 (367)
Q Consensus 80 ~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~ 157 (367)
.+.+||+|+++.+.|+++. +...++..|++++.++. .++.+|+++ ++ +++++|++++| ||||.+.|++
T Consensus 146 ~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~-~~~~~d~~~----i~----~~t~~v~i~~p-n~tG~~~~l~ 215 (438)
T 1wyu_A 146 RETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL-EGGRTPLPE----VG----EEVGAVVVQNP-NFLGALEDLG 215 (438)
T ss_dssp HHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECC-BTTBCCCCC----CC----TTEEEEEEESS-CTTSBCCCHH
T ss_pred hcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcC-cCCccCHHH----hC----CCeEEEEEECC-CCCeEEecHH
Confidence 2478999999999988874 44556778999999997 456778777 44 57899999999 9999999999
Q ss_pred HHHHHHHhcCCCcEEEEeee-eccCceeeccccccceEEEecCCC-----cccCCCcceeeeeCHHHHHHhccCCC----
Q 017726 158 KVRKLLDEYRHPALFLVDGV-SSICAIDFRMDEWGIDVALTGSQK-----ALSLPTGMGIVCASPKALEASKTAKS---- 227 (367)
Q Consensus 158 ~i~~~~~~~~~~~~vi~D~~-~~~~~~~~~~~~~~~d~~~~s~~K-----~~~g~~g~g~~~~~~~~~~~~~~~~~---- 227 (367)
+|.++|++ +|+++++|.. ++++....+ ...++|++++|++| |++|| |+|++++++++++++.....
T Consensus 216 ~i~~la~~--~g~~vivd~d~~a~g~~~~~-~~~g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~~~~~l~~~~~g~~~ 291 (438)
T 1wyu_A 216 PFAEAAHG--AGALFVAVADPLSLGVLKPP-GAYGADIAVGDGQSLGLPMGFGGP-HFGFLATKKAFVRQLPGRLVSETV 291 (438)
T ss_dssp HHHHHHHH--TTCEEEEECCTTGGGTBCCH-HHHTCSEEEEECTTTTCCCGGGCS-CCEEEEECGGGGGGCCSCCEEEEE
T ss_pred HHHHHHHH--cCCEEEEEechhhccCcCCC-ccCCCCEEEECCcccCCCccCCCC-CeeEEEEcHHHHHhCCCceecccc
Confidence 99999999 9999997755 445544333 34578999999776 67667 88999999998776643211
Q ss_pred -----CceeechH--HHHHHhhcCCccCCCCcHHHHHHHHHH--HHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccc
Q 017726 228 -----VRVFFDWK--DYIKFYNLGTFWPYTPSIQLLYGLRAA--LDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNC 297 (367)
Q Consensus 228 -----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~al~~a--l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 297 (367)
..+.++++ ....+++.++ ++......++++.++ +..+.++|++++.++..++++++.+.|+++ |+++.
T Consensus 292 ~~~~~~~~~~~l~~~~~~~r~~~~t--~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 369 (438)
T 1wyu_A 292 DVEGRRGFILTLQAREQYIRRAKAK--SNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPF 369 (438)
T ss_dssp BTTSCEEEEECCGGGSHHHHGGGSS--CCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEEC
T ss_pred ccCCCcceeeeccccccccchhccc--CCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEC
Confidence 11122221 2223444444 111111334555555 666777788999999999999999999998 98887
Q ss_pred cCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEE--ccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 298 TQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSL--GLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v--~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
.+.+ ....+.+..+ .+..+++++|.++ ||.+ .++... .++++||++....+.+|+
T Consensus 370 ~~~~---~~~~~~~~~~--~~~~~~~~~L~~~-gi~v~~~~~~~~-~~~~lRis~~~~~t~edi 426 (438)
T 1wyu_A 370 TPKP---FFNEFALALP--KDPEAVRRALAER-GFHGATPVPREY-GENLALFAATELHEEEDL 426 (438)
T ss_dssp SCSS---BCSEEEEECS--SCHHHHHHHHHHT-TCCCCEECCTTS-CSSEEEEECCTTCCHHHH
T ss_pred CCCC---eEEEEEEeCC--CCHHHHHHHHHHC-Cceecccccccc-CCCeEEEEecccCCHHHH
Confidence 6521 1123445542 4678999999865 9998 444322 267899998866665544
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-29 Score=229.73 Aligned_cols=311 Identities=13% Similarity=0.041 Sum_probs=214.2
Q ss_pred cccccCCCCC-----ChHHHHHHHc--cCCCC---CCCC-cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHH--HH
Q 017726 10 NHLFVPGPVH-----IPDQVIRAMN--RNNED---YRSP-AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWE--SA 76 (367)
Q Consensus 10 ~~~~~~~p~~-----~~~~v~~a~~--~~~~~---~~~~-~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~--~~ 76 (367)
.+.+..|-+. +++.+.+++. +.... ...| .......++|+.++++++++++ +|++|+|+++++. .+
T Consensus 27 ~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~-~i~~t~G~~~al~~~~~ 105 (423)
T 3ez1_A 27 NLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYLDVKAE-NVLVWNNSSLELQGLVL 105 (423)
T ss_dssp CEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHTTSCGG-GEEECSSCHHHHHHHHH
T ss_pred eEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHhCCChh-hEEEeCCcHHHHHHHHH
Confidence 4556655444 5667888775 33221 1233 4445567999999999998765 5999999999997 78
Q ss_pred HHccCC--C---------CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEE-E
Q 017726 77 LTNTLS--P---------GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICI-V 144 (367)
Q Consensus 77 ~~~~~~--~---------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~-~ 144 (367)
+.+++. + ||+|++..|.|.++. ..++..|.+++.++.+.++ +|++++++++++. +++++|++ +
T Consensus 106 ~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~--~~~~~v~~~~ 180 (423)
T 3ez1_A 106 TFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHF--LLLQTLGFELLTVDMQSDG-PDVDAVERLAGTD--PSVKGILFVP 180 (423)
T ss_dssp HHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHH--HHHHHHTCEEEEEEEETTE-ECHHHHHHHHHSC--TTEEEEEECS
T ss_pred HHHHhccCCCccccccCCCCEEEEcCCCcHHHH--HHHHHcCCEEEeccCCCCC-CCHHHHHHHHhhC--CCceEEEECC
Confidence 887776 7 599999999887653 5577789999999987664 8999999999532 47899975 4
Q ss_pred ecCCCccccccHH---HHHHHH-HhcCCCcEEEEeeeeccCcee-------ecc-------ccccceEEEecCCCcccCC
Q 017726 145 HNETATGVTNNLS---KVRKLL-DEYRHPALFLVDGVSSICAID-------FRM-------DEWGIDVALTGSQKALSLP 206 (367)
Q Consensus 145 ~~~n~tG~~~~~~---~i~~~~-~~~~~~~~vi~D~~~~~~~~~-------~~~-------~~~~~d~~~~s~~K~~~g~ 206 (367)
+++||||.++|.+ +|.++| ++ +|+++|+|++|+..... .+. ...+.++++.|+||++.++
T Consensus 181 ~~~NPtG~~~~~~~l~~l~~~a~~~--~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G 258 (423)
T 3ez1_A 181 TYSNPGGETISLEKARRLAGLQAAA--PDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAG 258 (423)
T ss_dssp SSCTTTCCCCCHHHHHHHHTCCCSS--TTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSS
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHhc--cCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCC
Confidence 8899999999877 677777 77 99999999998832111 111 1335789999999975555
Q ss_pred CcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHH-HH--HhChHHHHHHHHHHHH
Q 017726 207 TGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL-IF--EEGLENVIERHRRLGK 283 (367)
Q Consensus 207 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~-~~--~~g~~~~~~~~~~~~~ 283 (367)
.++|+++.++++++.+.... ... .++++.....++..++.. .. ...+++.++.+.++++
T Consensus 259 ~r~G~~~~~~~~~~~~~~~~---------------~~~---~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 320 (423)
T 3ez1_A 259 AGLGFVASSEDNIRWLSKYL---------------GAQ---SIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFR 320 (423)
T ss_dssp SSCEEEEECHHHHHHHHHHH---------------HHS---CSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCHHHHHHHHHHH---------------hhh---ccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 66899999999888776421 001 223455444444444443 11 1125556666667777
Q ss_pred HHHHHHHH----cC--CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEcc-CCCC-----CCCcEEEEeec
Q 017726 284 ATRLAVEA----WG--LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGL-GLNK-----VAGKVFRIGHL 351 (367)
Q Consensus 284 ~l~~~L~~----~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~-g~~~-----~~~~~iRi~~~ 351 (367)
.+.+.|.+ .| +.+..+ ..+.++++.++.. +.+++.+.|. ++||.+.+ |... ...+++||++.
T Consensus 321 ~l~~~l~~~l~~~~~~~~~~~p----~~g~~~~~~~~~~-~~~~~~~~l~-~~gv~v~~~g~~~~~~~~~~~~~iRis~~ 394 (423)
T 3ez1_A 321 AVDEVLRAELGEGGEYATWTLP----KGGYFISLDTAEP-VADRVVKLAE-AAGVSLTPAGATYPAGQDPHNRNLRLAPT 394 (423)
T ss_dssp HHHHHHHHHHTTTTSSEEECCC----SBSSCEEEEESSS-CHHHHHHHHH-HTTEECCCTTTTSSTTCCSSSCEEEECCS
T ss_pred HHHHHHHHhcCcCCCceEEeCC----CccEEEEEECCCC-cHHHHHHHHH-HCCcEEecCcccccCCCCCCCCeEEEEcC
Confidence 77777765 33 444444 3556788888654 6778888775 55999998 5322 23578999974
Q ss_pred C
Q 017726 352 G 352 (367)
Q Consensus 352 ~ 352 (367)
.
T Consensus 395 ~ 395 (423)
T 3ez1_A 395 R 395 (423)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-28 Score=227.42 Aligned_cols=328 Identities=13% Similarity=0.094 Sum_probs=224.1
Q ss_pred CChHHHHHHHccCCCC--CC-----CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc----CCCCC--
Q 017726 19 HIPDQVIRAMNRNNED--YR-----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT----LSPGD-- 85 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~--~~-----~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~----~~~gd-- 85 (367)
...+++.+++.+.... .. .++..+...++++++++++|.+. .+++++||++++..++.++ ..+||
T Consensus 77 ~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~--~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~ 154 (474)
T 1wyu_B 77 KYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDA--ITLEPAAGAHGELTGILIIRAYHEDRGEGR 154 (474)
T ss_dssp CCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred cCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCc--eeecChHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 3345566666654221 11 22345678899999999999875 4678899999998755443 35777
Q ss_pred ---eEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccc-ccHHHHHH
Q 017726 86 ---RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT-NNLSKVRK 161 (367)
Q Consensus 86 ---~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~-~~~~~i~~ 161 (367)
+|+++.+.|.++. ..++..|++++.++.+.++.+|+++++++++ +++++|++++| ||+|.+ .|+++|.+
T Consensus 155 ~r~~Vlv~~~~h~~~~--~~~~~~G~~vv~v~~~~~~~~d~~~L~~~i~----~~t~~v~~~~p-n~~G~~~~~l~~i~~ 227 (474)
T 1wyu_B 155 TRRVVLVPDSAHGSNP--ATASMAGYQVREIPSGPEGEVDLEALKRELG----PHVAALMLTNP-NTLGLFERRILEISR 227 (474)
T ss_dssp TCCEEEEETTSCTHHH--HHHHHTTCEEEEECBCTTSSBCHHHHHHHCS----TTEEEEEECSS-CTTSCCCTTHHHHHH
T ss_pred CCCEEEEeCCcChhhH--HHHHHCCCEEEEecCCCCCCcCHHHHHHhhC----CCceEEEEECC-CCCcccCCCHHHHHH
Confidence 9999998877654 4477889999999998888999999999997 46799999987 689998 69999999
Q ss_pred HHHhcCCCcEEEEeeeeccCce-eeccccccceEEEecCCCcccCCC-----cceeeeeCHHHHHHhccCC----CCcee
Q 017726 162 LLDEYRHPALFLVDGVSSICAI-DFRMDEWGIDVALTGSQKALSLPT-----GMGIVCASPKALEASKTAK----SVRVF 231 (367)
Q Consensus 162 ~~~~~~~~~~vi~D~~~~~~~~-~~~~~~~~~d~~~~s~~K~~~g~~-----g~g~~~~~~~~~~~~~~~~----~~~~~ 231 (367)
+|++ +|+++|+|++|+.+.. ..+....++|++++|+||++++|. |+|++++++++++++.... ...+.
T Consensus 228 l~~~--~g~~li~Dea~~~~~~g~~~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~ 305 (474)
T 1wyu_B 228 LCKE--AGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFY 305 (474)
T ss_dssp HHHH--HTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEE
T ss_pred HHHH--cCCEEEEeCchhhhhccCCCcccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeE
Confidence 9999 9999999999975543 233344578999999999998763 5899999999877664210 00111
Q ss_pred echHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEE
Q 017726 232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAV 311 (367)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 311 (367)
+++. ... ..+.+..++.+...+.+...++..+..++++++.++..++++++.+.|++.|+++..+... .. .+++
T Consensus 306 ~~~~-~~~--~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~--~~-~~~~ 379 (474)
T 1wyu_B 306 LDFD-RPK--SIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPS--MH-EFVA 379 (474)
T ss_dssp EECC-CTT--CCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSSC--CS-CEEE
T ss_pred eccc-Ccc--cCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcEecCCCCc--ce-EEEE
Confidence 1110 000 0011112235554444444455544456688889999999999999999988776433211 11 1344
Q ss_pred EcCCCCCHHHHHHHHHhhCCeEEccC-CCCCCCcEEEEeecCCCCHH--HHHHhhh
Q 017726 312 IVPSHINSSEIVRRAWQRYNLSLGLG-LNKVAGKVFRIGHLGHLNEV--MFNFQLL 364 (367)
Q Consensus 312 ~~~~~~~~~~l~~~L~~~~gv~v~~g-~~~~~~~~iRi~~~~~~~~~--~~~~~~l 364 (367)
.++.+.+..++.++|.++ ||.+... +....++++||++....+.+ |.+.++|
T Consensus 380 ~~~~~~~~~~l~~~L~~~-Gi~~~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L 434 (474)
T 1wyu_B 380 QPPEGFRALDLAKGLLEL-GFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAM 434 (474)
T ss_dssp BCSTTCCHHHHHHHHHHT-TCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHC-CccccccccccccCCEEEEEeecCCCHHHHHHHHHHH
Confidence 554466788999999866 9875321 21123567999987655544 4444444
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=233.79 Aligned_cols=303 Identities=11% Similarity=0.085 Sum_probs=209.1
Q ss_pred HHHHHHHHHHHHHHHhcCCC-CceEEecCChhHHHHHHHHccCC--------CC-----C-eEEEEeCCcchHHHHHHHH
Q 017726 40 VPALTKTLLEDIKKIFKTTS-GTPFLIPTTGTGAWESALTNTLS--------PG-----D-RIISFLIGQFSLLWIDQQQ 104 (367)
Q Consensus 40 ~~~~~~~~~~~la~~~~~~~-~~~v~~~~ggt~al~~~~~~~~~--------~g-----d-~vl~~~~~~~~~~~~~~~~ 104 (367)
......++++++++++|.+. ..++++++|||+|+..++.++.. +| + .|+++.+.|++.. ..++
T Consensus 130 ~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~--~~~~ 207 (504)
T 2okj_A 130 FVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIK--KAGA 207 (504)
T ss_dssp HHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHH--HHHH
Confidence 34556778899999999983 34699999999999998876532 45 6 6888878888753 4456
Q ss_pred HhCC---ceEEEeCCCCCCCCHHHHHHHHhccC--CCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeec
Q 017726 105 RLNF---NVDVVESDWGEGAKLDVLASKLAADT--AHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSS 179 (367)
Q Consensus 105 ~~g~---~~~~v~~~~~~~~d~e~l~~~i~~~~--~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~ 179 (367)
..|. +++.+|.+.++.+|+++|++++++.. ..+|++|++++++|+||.+.|+++|.++|++ +|+++++|++++
T Consensus 208 ~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~--~g~~lhvD~a~~ 285 (504)
T 2okj_A 208 ALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEK--YNLWLHVDAAWG 285 (504)
T ss_dssp HTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHH--HTCEEEEEETTG
T ss_pred HcCCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHH--cCCEEEEehhhh
Confidence 6666 89999998889999999999998521 0257999999999999999999999999999 999999999998
Q ss_pred cCcee-----ecccc-ccceEEEecCCCcccCCCcceeeeeCHH-HHHHhccCCCCcee---------echHHHHHHhhc
Q 017726 180 ICAID-----FRMDE-WGIDVALTGSQKALSLPTGMGIVCASPK-ALEASKTAKSVRVF---------FDWKDYIKFYNL 243 (367)
Q Consensus 180 ~~~~~-----~~~~~-~~~d~~~~s~~K~~~g~~g~g~~~~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 243 (367)
.+... ..+.. .++|++++++||++++|.|+|+++++++ +++........... .++.++ .++.
T Consensus 286 ~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~ 363 (504)
T 2okj_A 286 GGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDK--AIQC 363 (504)
T ss_dssp GGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGG--SSCS
T ss_pred hHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccC--CCCC
Confidence 77653 22222 2689999999999988888999999874 55542211111000 001000 0111
Q ss_pred CCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEc-CCCC----
Q 017726 244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV-PSHI---- 317 (367)
Q Consensus 244 ~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-~~~~---- 317 (367)
+. . ... ..++++++.+...|++++.++..++++++.+.|++. |++++.+.+. ..+ +++|+. +...
T Consensus 364 ~r--r--~~~---l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p-~~~-~v~f~~~~~~~~~~~ 434 (504)
T 2okj_A 364 GR--H--VDI---FKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEP-EHT-NVCFWYIPQSLRGVP 434 (504)
T ss_dssp SC--B--CCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCC-SSS-CEEEEECCGGGSSCC
T ss_pred CC--C--ccH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCC-CeE-EEEEEEeCccccccc
Confidence 11 0 122 355666777777788999999999999999999997 8888763111 233 455654 3211
Q ss_pred -----------CHHHHHHHHHhhCCe-EEccCCCCCCCcEEEEeec-CCCCHHH
Q 017726 318 -----------NSSEIVRRAWQRYNL-SLGLGLNKVAGKVFRIGHL-GHLNEVM 358 (367)
Q Consensus 318 -----------~~~~l~~~L~~~~gv-~v~~g~~~~~~~~iRi~~~-~~~~~~~ 358 (367)
...++.+.|.++ |+ .+.++.......++|+++. ...+.+|
T Consensus 435 ~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~~~~~~~~~lRis~~~~~~t~ed 487 (504)
T 2okj_A 435 DSPQRREKLHKVAPKIKALMMES-GTTMVGYQPQGDKANFFRMVISNPAATQSD 487 (504)
T ss_dssp CCHHHHHHHTTHHHHHHHHHHHH-TSCEEEEEEETTEEEEEEECCCCTTCCHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHhC-CcEEEEeeEECCceEEEEEEeCCCCCCHHH
Confidence 034688888776 64 4432211111247999986 3444443
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-28 Score=233.25 Aligned_cols=309 Identities=13% Similarity=0.081 Sum_probs=210.4
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC-------C-CCC------eEEEEeCCcchHHHHHHHH
Q 017726 39 AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-------S-PGD------RIISFLIGQFSLLWIDQQQ 104 (367)
Q Consensus 39 ~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~-------~-~gd------~vl~~~~~~~~~~~~~~~~ 104 (367)
...+...++++++++++|.+. .++++++|||+|+..++.+.. . +|+ .|+++...|++.. ..++
T Consensus 145 ~~~~le~~~~~~la~l~g~~~-~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~--~~~~ 221 (515)
T 2jis_A 145 VFVLMEEEVLRKLRALVGWSS-GDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQ--KGAA 221 (515)
T ss_dssp HHHHHHHHHHHHHHHHHTCSS-CEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCC-CCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHH--HHHH
Confidence 345677889999999999984 459999999999988876642 2 465 7888888888754 4566
Q ss_pred HhCC---ceEEEeCCCCCCCCHHHHHHHHhccC--CCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeec
Q 017726 105 RLNF---NVDVVESDWGEGAKLDVLASKLAADT--AHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSS 179 (367)
Q Consensus 105 ~~g~---~~~~v~~~~~~~~d~e~l~~~i~~~~--~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~ 179 (367)
..|. +++.+|.+.++.+|+++|++++++.. ..+|++|++++++|++|.+.|+++|.++|++ +|+++++|++++
T Consensus 222 ~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~--~g~~l~vD~a~~ 299 (515)
T 2jis_A 222 FLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQR--HGLWLHVDAAWG 299 (515)
T ss_dssp HTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH--HTCEEEEEETTG
T ss_pred HcCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHH--cCCeEEEehhhh
Confidence 6777 89999998888999999999998521 0257999999999999999999999999999 999999999999
Q ss_pred cCceeec-----cccc-cceEEEecCCCcccCCCcceeeeeCHH--HHHHhccCCCCceeechHH-HHHHhhcCCcc-CC
Q 017726 180 ICAIDFR-----MDEW-GIDVALTGSQKALSLPTGMGIVCASPK--ALEASKTAKSVRVFFDWKD-YIKFYNLGTFW-PY 249 (367)
Q Consensus 180 ~~~~~~~-----~~~~-~~d~~~~s~~K~~~g~~g~g~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~ 249 (367)
.+....+ +... ++|++++++|||+++|.|+|+++++++ ++++...... .+...... ....++.+++. ..
T Consensus 300 ~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~-~yl~~~~~~~~~~~~~~~~~~~~ 378 (515)
T 2jis_A 300 GSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQA-SYLFQQDKFYDVALDTGDKVVQC 378 (515)
T ss_dssp GGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC----------CCSCGGGCCGGGCSCS
T ss_pred hHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCc-hhccCCcccccccCCCCCCCCCC
Confidence 8776544 3333 789999999999988999999999877 6655321111 11100000 00001111100 00
Q ss_pred CCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEc-CCCC----CHH---
Q 017726 250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV-PSHI----NSS--- 320 (367)
Q Consensus 250 ~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-~~~~----~~~--- 320 (367)
+.. ....+++++++.+...|++++.++..++++++.+.|++. |++++.+. .. ..++|+. |.+. +..
T Consensus 379 ~rr-~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~---~~-~~v~f~~~p~~~~~~~~~~~~~ 453 (515)
T 2jis_A 379 GRR-VDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEP---EF-VNVCFWFVPPSLRGKQESPDYH 453 (515)
T ss_dssp SCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCC---SS-SEEEEEECCGGGTTCTTSTTHH
T ss_pred CCc-ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC---Ce-eEEEEEEeCccccccccchhHH
Confidence 000 012456666777777889999999999999999999997 88887641 22 3455654 3211 111
Q ss_pred --------HHHHHHHhhCCeEEcc-CCCCCCCcEEEEee-cCCCCHHHH
Q 017726 321 --------EIVRRAWQRYNLSLGL-GLNKVAGKVFRIGH-LGHLNEVMF 359 (367)
Q Consensus 321 --------~l~~~L~~~~gv~v~~-g~~~~~~~~iRi~~-~~~~~~~~~ 359 (367)
.+.+.|.++ |+.+.. ........++|+++ ....+.+|+
T Consensus 454 ~~l~~~~~~l~~~l~~~-G~~~~~~~~~~~~~~~lRis~~~~~~t~edi 501 (515)
T 2jis_A 454 ERLSKVAPVLKERMVKE-GSMMIGYQPHGTRGNFFRVVVANSALTCADM 501 (515)
T ss_dssp HHHHTHHHHHHHHHHHH-TSCEEEEEEETTEEEEEEEECCCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhc-CCEEEEEEEECCceEEEEEEeCCCCCCHHHH
Confidence 255666655 754422 11111235799998 445554443
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=227.18 Aligned_cols=309 Identities=15% Similarity=0.096 Sum_probs=210.4
Q ss_pred CChHHHHHHHccCCC------CCCCCcHHHHHHHHHHHHHHH--hc-CCCCceEEecCChhHHHHHHHHccCCCCCeEEE
Q 017726 19 HIPDQVIRAMNRNNE------DYRSPAVPALTKTLLEDIKKI--FK-TTSGTPFLIPTTGTGAWESALTNTLSPGDRIIS 89 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~------~~~~~~~~~~~~~~~~~la~~--~~-~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~ 89 (367)
+.++.+.+++.+... ...+|.......++|+.++++ .| .++ ++|++++|+++++..++. ++.+||+|++
T Consensus 46 ~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~-~~v~~~~G~~~al~~~~~-~~~~gd~Vl~ 123 (400)
T 3asa_A 46 PLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDA-KEIFISDGAKVDLFRLLS-FFGPNQTVAI 123 (400)
T ss_dssp CCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCG-GGEEEESCHHHHHHHHHH-HHCSSCEEEE
T ss_pred CCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCH-HHEEEccChHHHHHHHHH-HcCCCCEEEE
Confidence 567777777766321 112232224567899999999 46 444 459999999999998654 4579999999
Q ss_pred EeCCcchHHHHHHHHHhCCc-eEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHh
Q 017726 90 FLIGQFSLLWIDQQQRLNFN-VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE 165 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~-~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~ 165 (367)
..|.|++.. ..++..|.+ ++.++.+.++.++.+ +++ + +++++|++++|+||||.++| +++|.++|++
T Consensus 124 ~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~-l~~-~-----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~ 194 (400)
T 3asa_A 124 QDPSYPAYL--DIARLTGAKEIIALPCLQENAFFPE-FPE-D-----THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIE 194 (400)
T ss_dssp EESCCHHHH--HHHHHTTCSEEEEEECCGGGTTCCC-CCT-T-----CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHH--HHHHHcCCcceEecccchhcCcccC-hhh-c-----cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 999887753 456778998 999998754333221 211 1 36799999999999999997 5568888999
Q ss_pred cCCCcEEEEeeeeccCc----eeecccc----ccceEEEecCCCcccCCCc--ceeeeeCHHH-------HHHhccCCCC
Q 017726 166 YRHPALFLVDGVSSICA----IDFRMDE----WGIDVALTGSQKALSLPTG--MGIVCASPKA-------LEASKTAKSV 228 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~----~~~~~~~----~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~-------~~~~~~~~~~ 228 (367)
+|+++|+|++|+... .+.++.. .+.++++.|++|+++ ++| +|++++++++ ++++..
T Consensus 195 --~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~GlriG~~~~~~~~~~~~~~~~~~~~~---- 267 (400)
T 3asa_A 195 --HEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLG-FAGIRLGWTVIPQELTYADGHFVIQDWE---- 267 (400)
T ss_dssp --TTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGT-TTTCCCEEEECCTTCBCTTSCBHHHHHH----
T ss_pred --cCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcC-CcchheeEEeeChhhccchhhhHHHHHH----
Confidence 999999999998322 1222222 135689999999984 444 6999998876 333321
Q ss_pred ceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCce
Q 017726 229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV 308 (367)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 308 (367)
.....+ .++.+.....++..+++. ..++++++++.++++++.+.|++.|+++..+ ..+.+
T Consensus 268 -----------~~~~~~--~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~~~ 327 (400)
T 3asa_A 268 -----------RFLSTT--FNGASIPAQEAGVAGLSI---LPQLEAIHYYRENSDLLRKALLATGFEVFGG----EHAPY 327 (400)
T ss_dssp -----------HHHHHH--CCCCCHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHHHHHHTTCEEEEC----SSSSE
T ss_pred -----------HHhccC--ccCCChHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHCCCeeeCC----CCceE
Confidence 000010 123555544444444443 2467888899999999999999988877664 24557
Q ss_pred EEEE-cCCCCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 309 TAVI-VPSHINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 309 ~~~~-~~~~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
++++ ++++.+..++.+.|.+++||.+.+|..+ ..++++||++....++.+...+.|.
T Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~i~~~l~~l~ 387 (400)
T 3asa_A 328 LWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILAACERLQ 387 (400)
T ss_dssp EEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCSCHHHHHHHHHHHH
T ss_pred EEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeCCHHHHHHHHHHHH
Confidence 8888 7666677789888877779999987543 2356799995444444444444443
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.9e-30 Score=237.37 Aligned_cols=284 Identities=11% Similarity=0.000 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHHHh------cCCCCceEEecCChhHHHHHHHHccCCCCC--------------eEEEE-eCCcchHHHH
Q 017726 42 ALTKTLLEDIKKIF------KTTSGTPFLIPTTGTGAWESALTNTLSPGD--------------RIISF-LIGQFSLLWI 100 (367)
Q Consensus 42 ~~~~~~~~~la~~~------~~~~~~~v~~~~ggt~al~~~~~~~~~~gd--------------~vl~~-~~~~~~~~~~ 100 (367)
....++|+.+++++ ++++ ++|++|+|+++|+.+++.+++.+|| +|+++ .|.|+++...
T Consensus 83 ~g~~~lr~~ia~~l~~~~g~~~~~-~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~ 161 (444)
T 3if2_A 83 QGDSAFIDALVGFFNRHYDWNLTS-ENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDV 161 (444)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCG-GGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTC
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCH-HHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhc
Confidence 44567888888887 3344 4699999999999999999988887 78775 6766665310
Q ss_pred ----HHHHHhCCceEEEeCCC-C----CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCC
Q 017726 101 ----DQQQRLNFNVDVVESDW-G----EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRH 168 (367)
Q Consensus 101 ----~~~~~~g~~~~~v~~~~-~----~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~ 168 (367)
......|..+..++.+. + +.+|++++++++.+.. +++++|++++|+||||.++| +++|.++|++ +
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~-~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~--~ 238 (444)
T 3if2_A 162 HVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKE-GRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKR--Y 238 (444)
T ss_dssp CSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHT-TCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--T
T ss_pred ccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcC-CCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHH--C
Confidence 02334577888888764 2 3689999998843211 57899999999999999998 7788889999 9
Q ss_pred CcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhc
Q 017726 169 PALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL 243 (367)
Q Consensus 169 ~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (367)
|+++|+|++|+.+... ......+.++++.|+||++.++.++|+++.++++++.+..... .
T Consensus 239 ~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~~~~~-------------~-- 303 (444)
T 3if2_A 239 DIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIEAVSAMNA-------------V-- 303 (444)
T ss_dssp TCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHH-------------H--
T ss_pred CCEEEEECCCCCcccccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHHHHHHHHHH-------------h--
Confidence 9999999999742211 1112236789999999974333557999999998887753210 0
Q ss_pred CCccCCCCcHHHHHHHHHHHHHHHHhC-hHH-HHHHHHHHHHHHHHHHHHc----CCccccCCCccCCCceEEEEcCC-C
Q 017726 244 GTFWPYTPSIQLLYGLRAALDLIFEEG-LEN-VIERHRRLGKATRLAVEAW----GLKNCTQKEEWFSDTVTAVIVPS-H 316 (367)
Q Consensus 244 ~~~~~~~~~~~~~~al~~al~~~~~~g-~~~-~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~-~ 316 (367)
. .++++.....++..++....... ..+ +++++.++++.+.+.|++. ++.+..+ ..+.++++.++. +
T Consensus 304 ~---~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~----~~g~~~~~~~~~~~ 376 (444)
T 3if2_A 304 V---NLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKP----EGAIFLWLWFKDLP 376 (444)
T ss_dssp H---HSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECC----CBSSEEEEEETTCS
T ss_pred c---cCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecC----CccEEEEEEcCCCC
Confidence 0 11233333333333333211111 222 5667788888888888773 3445444 345678888865 5
Q ss_pred CCHHHHHHHHHhhCCeEEccCCCCCC----------CcEEEEeecC
Q 017726 317 INSSEIVRRAWQRYNLSLGLGLNKVA----------GKVFRIGHLG 352 (367)
Q Consensus 317 ~~~~~l~~~L~~~~gv~v~~g~~~~~----------~~~iRi~~~~ 352 (367)
.+..++.+.|. ++||.+.+|..+.. .+++||++..
T Consensus 377 ~~~~~l~~~l~-~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~ 421 (444)
T 3if2_A 377 ISTLDLYERLK-AKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA 421 (444)
T ss_dssp SCHHHHHHHHH-HTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS
T ss_pred CCHHHHHHHHH-HCCeEEecchhhcCCCCCcccccCCCeEEEEEeC
Confidence 78889999995 55999998854322 2579999766
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=230.63 Aligned_cols=318 Identities=11% Similarity=-0.006 Sum_probs=214.2
Q ss_pred ChHHHHHHHccCCC-----CCCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccC-CCCCeEE
Q 017726 20 IPDQVIRAMNRNNE-----DYRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTL-SPGDRII 88 (367)
Q Consensus 20 ~~~~v~~a~~~~~~-----~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~-~~gd~vl 88 (367)
.|..+++++.+... ....|.......++|+.+++++ |.+ .+++|++|+|+++++..++.+++ .+||.|+
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vl 186 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGIL 186 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEE
Confidence 45555555443221 1223333344456666666665 432 33569999999999999999987 7999999
Q ss_pred EEeCCcchHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhccC--CCCccEEEEEecCCCcccccc---HHHHHH
Q 017726 89 SFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADT--AHTIKAICIVHNETATGVTNN---LSKVRK 161 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~--~~~~~lv~~~~~~n~tG~~~~---~~~i~~ 161 (367)
++.|.|++.. ..++..|.+++.++++++ +.+|++++++++++.. ..++++|++++|+||||.+++ +++|.+
T Consensus 187 v~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~ 264 (500)
T 3tcm_A 187 VPIPQYPLYS--ASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVK 264 (500)
T ss_dssp EEESCCTHHH--HHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred EeCCCcHhHH--HHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHH
Confidence 9999887643 557788999999998764 5889999999998521 026799999999999999987 455666
Q ss_pred HHHhcCCCcEEEEeeeeccCcee-----ecc----------ccccceEEEecCCCcccCCCc--ceeeee---CHHHHHH
Q 017726 162 LLDEYRHPALFLVDGVSSICAID-----FRM----------DEWGIDVALTGSQKALSLPTG--MGIVCA---SPKALEA 221 (367)
Q Consensus 162 ~~~~~~~~~~vi~D~~~~~~~~~-----~~~----------~~~~~d~~~~s~~K~~~g~~g--~g~~~~---~~~~~~~ 221 (367)
+|++ +|+++++|++|..+... .++ ......+++.|+||.+.|.+| +|++++ +++++++
T Consensus 265 la~~--~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~ 342 (500)
T 3tcm_A 265 FCKN--EGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQ 342 (500)
T ss_dssp HHHH--HTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHH
T ss_pred HHHH--cCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHH
Confidence 6998 99999999998764321 111 110123777899999854444 599887 8888877
Q ss_pred hccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHH----------HHHHhChHHHHHHHHHHHHHHHHHHHH
Q 017726 222 SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALD----------LIFEEGLENVIERHRRLGKATRLAVEA 291 (367)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~----------~~~~~g~~~~~~~~~~~~~~l~~~L~~ 291 (367)
+.... . . ..+++.....++..++. .+.++ ++++++++.++++++.+.|++
T Consensus 343 l~~~~---------------~-~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~~~L~~ 402 (500)
T 3tcm_A 343 IYKIA---------------S-V---NLCSNITGQILASLVMNPPKASDESYASYKAE-KDGILASLARRAKALEHAFNK 402 (500)
T ss_dssp HHHHH---------------H-T---TCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH---------------h-c---ccCCCHHHHHHHHHHhcCccccchhHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 75321 0 0 22356655566665654 12222 567888899999999999999
Q ss_pred c-CCccccCCCccCCCceEEEEc--CC---------CCC-HHHHHHHHHhhCCeEEccCCCCC---CCcEEEEeecCCCC
Q 017726 292 W-GLKNCTQKEEWFSDTVTAVIV--PS---------HIN-SSEIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLN 355 (367)
Q Consensus 292 ~-g~~~~~~~~~~~~~~~~~~~~--~~---------~~~-~~~l~~~L~~~~gv~v~~g~~~~---~~~~iRi~~~~~~~ 355 (367)
+ |+.+..+ .++.++++++ |. +.. ...++..+++++||.+.+|..+. ...+||+++....+
T Consensus 403 ~~g~~~~~~----~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~~~~e 478 (500)
T 3tcm_A 403 LEGITCNEA----EGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQED 478 (500)
T ss_dssp STTEECCCC----CBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESCSCTT
T ss_pred CCCcEEecC----CeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEECCCHH
Confidence 8 8888776 4555555443 21 112 22344556666799999986543 23569999875555
Q ss_pred HHHHHHhhhh
Q 017726 356 EVMFNFQLLF 365 (367)
Q Consensus 356 ~~~~~~~~l~ 365 (367)
+.+...+.|.
T Consensus 479 ~i~~~i~~l~ 488 (500)
T 3tcm_A 479 KIPAVISRFT 488 (500)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5544444443
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=223.01 Aligned_cols=330 Identities=15% Similarity=0.135 Sum_probs=222.7
Q ss_pred CCCCCCCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-C
Q 017726 3 YMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-L 81 (367)
Q Consensus 3 ~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~ 81 (367)
++|. +.+.+.. |. .|+.+++++.+...... +.......++++.++++++.+ .+++++||++|+..++.++ +
T Consensus 5 ~~~~--~~i~~~~-p~-~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~la~~~~~~---~~~~~~~gt~al~~~~~~~~~ 76 (393)
T 1mdo_A 5 KMMS--DFLPFSR-PA-MGAEELAAVKTVLDSGW-ITTGPKNQELEAAFCRLTGNQ---YAVAVSSATAGMHIALMALGI 76 (393)
T ss_dssp ------CCBCSCC-CC-CCHHHHHHHHHHHHHTC-CSSSHHHHHHHHHHHHHHCCS---EEEEESCHHHHHHHHHHHTTC
T ss_pred cccc--cccccCC-CC-CCHHHHHHHHHHHhcCC-cCCChHHHHHHHHHHHHhCCC---cEEEecChHHHHHHHHHHcCC
Confidence 4553 3344443 43 56777888877543221 112367889999999999975 4899999999999999998 8
Q ss_pred CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHH
Q 017726 82 SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVR 160 (367)
Q Consensus 82 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~ 160 (367)
.+||+|+++.++|++.. ..++..|++++.++.+++ +.+|+++++++++ +++++|++++ |+|.+.|+++|.
T Consensus 77 ~~gd~Vl~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~----~~~~~v~~~~---~~G~~~~~~~i~ 147 (393)
T 1mdo_A 77 GEGDEVITPSMTWVSTL--NMIVLLGANPVMVDVDRDTLMVTPEHIEAAIT----PQTKAIIPVH---YAGAPADLDAIY 147 (393)
T ss_dssp CTTCEEEEESSSCHHHH--HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCC----TTEEEECCBC---GGGCCCCHHHHH
T ss_pred CCCCEEEeCCCccHhHH--HHHHHCCCEEEEEeccCCcCCCCHHHHHHhcC----CCceEEEEeC---CCCCcCCHHHHH
Confidence 99999999999888754 456778999999998764 5789999999997 4678888764 799999999999
Q ss_pred HHHHhcCCCcEEEEeeeeccCceeecccccc-ceEEEecCC--CcccCCCcceeeeeC-HHHHHHhccCCCCceeech-H
Q 017726 161 KLLDEYRHPALFLVDGVSSICAIDFRMDEWG-IDVALTGSQ--KALSLPTGMGIVCAS-PKALEASKTAKSVRVFFDW-K 235 (367)
Q Consensus 161 ~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~-~d~~~~s~~--K~~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~-~ 235 (367)
++|++ +|+++|+|++|+.+... +....+ .|++++|+| |+++++. +|+++.+ +++++++..........+. .
T Consensus 148 ~l~~~--~~~~li~D~a~~~g~~~-~~~~~~~~d~~~~S~~k~K~l~~~~-~g~~~~~~~~~~~~l~~~~~~~~~~~~~~ 223 (393)
T 1mdo_A 148 ALGER--YGIPVIEDAAHATGTSY-KGRHIGARGTAIFSFHAIKNITCAE-GGIVVTDNPQFADKLRSLKFHGLGVDAWD 223 (393)
T ss_dssp HHHHH--HTCCBCEECTTCTTCEE-TTEETTSSSEEEEECCTTSSSCSSS-CEEEEESCHHHHHHHHHHTBTTEECC---
T ss_pred HHHHH--cCCeEEEECccccCCeE-CCeecCCCCeEEEeCCCCCcccccc-ceEEEeCCHHHHHHHHHHHhcCCcccchh
Confidence 99999 99999999999976543 222234 899999988 9997654 5888886 7888777643322211110 0
Q ss_pred HH----HHHhhcCCc-cCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCC--CccCCCce
Q 017726 236 DY----IKFYNLGTF-WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK--EEWFSDTV 308 (367)
Q Consensus 236 ~~----~~~~~~~~~-~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--~~~~~~~~ 308 (367)
.+ ...++..+. ..+..+. +.+++......++++..++.+++++++.+.|++.++++.... .....+.+
T Consensus 224 ~~~~~~~~~~~~~~~g~~~~~~~-----~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 298 (393)
T 1mdo_A 224 RQSGGRAPQAEVLAPGYKYNLPD-----LNAAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHL 298 (393)
T ss_dssp --------CCEESSCCCBCCCCH-----HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSC
T ss_pred hhcccccccccccccCccCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEE
Confidence 00 001110000 0011222 122222222234677788888899999999998776554321 11124456
Q ss_pred EEEEcCC---CCCHHHHHHHHHhhCCeEEccCCCCC---------------------CCcEEEEeecCCCCHHHH
Q 017726 309 TAVIVPS---HINSSEIVRRAWQRYNLSLGLGLNKV---------------------AGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 309 ~~~~~~~---~~~~~~l~~~L~~~~gv~v~~g~~~~---------------------~~~~iRi~~~~~~~~~~~ 359 (367)
+++.+++ +.+..++.+.|.++ ||.++++..+. ....+|+++....+++|+
T Consensus 299 ~~v~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i 372 (393)
T 1mdo_A 299 FIIRVDEARCGITRDALMASLKTK-GIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDF 372 (393)
T ss_dssp EEEECCHHHHSSCHHHHHHHHHHT-TBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHH
T ss_pred EEEEecccccccCHHHHHHHHHhC-CCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHH
Confidence 7888853 56788999999764 99999876431 123799998766665443
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.7e-28 Score=219.97 Aligned_cols=294 Identities=17% Similarity=0.083 Sum_probs=203.1
Q ss_pred ChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeEEEEeCCcchH
Q 017726 20 IPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSL 97 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl~~~~~~~~~ 97 (367)
+++++.+++.+.... ..++.......++++.+++++|.+ +.+++ +|||+|+..++.++ +.+||+|+++.++|++.
T Consensus 15 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~l~~~la~~~~~~--~~i~~-~sGt~al~~~l~~l~~~~gd~Vi~~~~~~~~~ 91 (388)
T 1b9h_A 15 YDDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHGAA--HALAV-TNGTHALELALQVMGVGPGTEVIVPAFTFISS 91 (388)
T ss_dssp CCHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTTCS--EEEEE-SCHHHHHHHHHHHTTCCTTCEEEEESSSCTHH
T ss_pred CCHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHhCCC--eEEEe-CCHHHHHHHHHHHcCCCCcCEEEECCCccHHH
Confidence 446777777764332 122223366789999999999986 34555 55699999999998 89999999999998886
Q ss_pred HHHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEee
Q 017726 98 LWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDG 176 (367)
Q Consensus 98 ~~~~~~~~~g~~~~~v~~~~~-~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~ 176 (367)
. ..++..|++++.++.+++ +.+|+++++++++ +++++|+ |+||||.+.|+++|.++|++ +|+++|+|+
T Consensus 92 ~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~----~~~~~v~---~~n~tG~~~~l~~i~~la~~--~~~~li~D~ 160 (388)
T 1b9h_A 92 S--QAAQRLGAVTVPVDVDAATYNLDPEAVAAAVT----PRTKVIM---PVHMAGLMADMDALAKISAD--TGVPLLQDA 160 (388)
T ss_dssp H--HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCC----TTEEEEC---CBCGGGCCCCHHHHHHHHHH--HTCCBCEEC
T ss_pred H--HHHHHcCCEEEEEecCCCcCCCCHHHHHHhcC----cCceEEE---EeCCccCcCCHHHHHHHHHH--cCCEEEEec
Confidence 4 456778999999998864 6889999999997 4668777 88999999999999999999 999999999
Q ss_pred eeccCcee--ecccccc-ceEEEecCCCcccCCCcceeeeeCHH-H--HHHhccCCCCceeechHHHHHHh---hcCCcc
Q 017726 177 VSSICAID--FRMDEWG-IDVALTGSQKALSLPTGMGIVCASPK-A--LEASKTAKSVRVFFDWKDYIKFY---NLGTFW 247 (367)
Q Consensus 177 ~~~~~~~~--~~~~~~~-~d~~~~s~~K~~~g~~g~g~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 247 (367)
+|+.+... .++...+ +++..+|.+|+++|+. +|+++.+++ + ++++.......... ....+ ..|+
T Consensus 161 a~~~g~~~~~~~~~~~~~i~~~S~s~~K~l~g~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~-- 233 (388)
T 1b9h_A 161 AHAHGARWQGKRVGELDSIATFSFQNGKLMTAGE-GGAVVFPDGETEKYETAFLRHSCGRPR----DDRRYFHKIAGS-- 233 (388)
T ss_dssp TTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSS-CEEEEECTTCHHHHHHHHHHTBTTCCT----TCSSCCCCSCCC--
T ss_pred chhcCCccCCeecccccceEEEEccCCCcccCCC-eEEEEECCHHHHHHHHHHHHHhCCCCc----cCccceeecccc--
Confidence 99976643 3333333 5566666779997655 599988876 5 45543221100000 00000 0121
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc--cCCCceEEEEcCCC--CCHHHH
Q 017726 248 PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE--WFSDTVTAVIVPSH--INSSEI 322 (367)
Q Consensus 248 ~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~l 322 (367)
.+.++....+++..+++ .+++..++.+++++++.+.|+++ |+.+..+.+. ...+++++++++.. .+.+++
T Consensus 234 ~~~~~~~~~a~~~~~~~-----~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 308 (388)
T 1b9h_A 234 NMRLNEFSASVLRAQLA-----RLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNAL 308 (388)
T ss_dssp BCBCBHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcCcccHHHH
Confidence 11244433333222222 25667788888999999999987 8877653221 13456788988532 256789
Q ss_pred HHHHHhhCCeEEccCCCC
Q 017726 323 VRRAWQRYNLSLGLGLNK 340 (367)
Q Consensus 323 ~~~L~~~~gv~v~~g~~~ 340 (367)
.+.|.+ +||.+++++.+
T Consensus 309 ~~~L~~-~gI~v~~~~~~ 325 (388)
T 1b9h_A 309 VDRLVE-AGLPAFAAFRA 325 (388)
T ss_dssp HHHHHH-TTCCEEECCCC
T ss_pred HHHHHH-CCCCcccccCc
Confidence 999975 49999887653
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=222.99 Aligned_cols=315 Identities=11% Similarity=0.009 Sum_probs=213.5
Q ss_pred cCCCCCChHHHHHHHcc-CCCC--CCCCcHHHHHHHHHHHHHHHhcCC-----CCc--eEEecCChhHHHHHHH--HccC
Q 017726 14 VPGPVHIPDQVIRAMNR-NNED--YRSPAVPALTKTLLEDIKKIFKTT-----SGT--PFLIPTTGTGAWESAL--TNTL 81 (367)
Q Consensus 14 ~~~p~~~~~~v~~a~~~-~~~~--~~~~~~~~~~~~~~~~la~~~~~~-----~~~--~v~~~~ggt~al~~~~--~~~~ 81 (367)
.++++++++.+.+++.+ .... ...|.......++|+.++++++.. .++ ++++|+|+++++..++ .+++
T Consensus 39 ~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~ 118 (397)
T 3fsl_A 39 EDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRY 118 (397)
T ss_dssp TTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH
T ss_pred CCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhc
Confidence 34566777899999887 4332 122322344568899999988652 234 6999999999999984 4567
Q ss_pred CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC--CCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---H
Q 017726 82 SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES--DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---L 156 (367)
Q Consensus 82 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~ 156 (367)
.+||+|++..|.|++. ...++..|.+++.++. +.++.+|++++++++++.. ++++++++++|+||||.+++ +
T Consensus 119 ~~gd~vl~~~p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~v~~~~p~nptG~~~~~~~l 195 (397)
T 3fsl_A 119 FPESGVWVSDPTWENH--VAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQ-AGSIVLLHPCCHNPTGADLTNDQW 195 (397)
T ss_dssp CTTCCEEEESSCCHHH--HHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCC-TTCEEEECSSSCTTTCCCCCHHHH
T ss_pred CCCCeEEEeCCCchhH--HHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCC-CCCEEEEeCCCCCCCCcCCCHHHH
Confidence 8999999999988774 3557788999999998 4567889999999998643 46789999999999999976 4
Q ss_pred HHHHHHHHhcCCCcEEEEeeeeccCcee-----ec---c-ccccceEEEecCCCcccCCCc--ceeeee---CHHHHHHh
Q 017726 157 SKVRKLLDEYRHPALFLVDGVSSICAID-----FR---M-DEWGIDVALTGSQKALSLPTG--MGIVCA---SPKALEAS 222 (367)
Q Consensus 157 ~~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~---~-~~~~~d~~~~s~~K~~~g~~g--~g~~~~---~~~~~~~~ 222 (367)
++|.++|++ +|+++|+|++|+.+... .. . ...+.++++.|++|.++ ++| +|++++ +++.++++
T Consensus 196 ~~l~~~~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~riG~~~~~~~~~~~~~~~ 272 (397)
T 3fsl_A 196 DAVIEILKA--RELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFS-LYGERVGGLSVMCEDAEAAGRV 272 (397)
T ss_dssp HHHHHHHHH--TTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTT-CGGGCCEEEEEECSSHHHHHHH
T ss_pred HHHHHHHHh--CCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEeccccccc-CcCCCeeEEEEecCCHHHHHHH
Confidence 588889999 99999999998765432 11 1 12346789999999984 555 688864 45555544
Q ss_pred ccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH-----HhChHHHHHHHHHHHHHHHHHHHHc----C
Q 017726 223 KTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-----EEGLENVIERHRRLGKATRLAVEAW----G 293 (367)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~-----~~g~~~~~~~~~~~~~~l~~~L~~~----g 293 (367)
... .......+ ..+++.....++..++.... +..++++++++.++++++.+.|++. |
T Consensus 273 ~~~------------~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 338 (397)
T 3fsl_A 273 LGQ------------LKATVRRN--YSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERN 338 (397)
T ss_dssp HHH------------HHHHHHTT--TSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred HHH------------HHHHHHhc--cCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 311 00000011 11234333333333333210 2236788899999999999999997 5
Q ss_pred CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHhhhh
Q 017726 294 LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQLLF 365 (367)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 365 (367)
+.+..+ ..+.++++.+ +.+.+.+.| +++||.+.+|. ||++.. ..++.+...+.|+
T Consensus 339 ~~~~~~----~~~~~~~~~~----~~~~~~~~l-~~~gi~v~~g~--------Ris~~~~~~~~i~~~~~~l~ 394 (397)
T 3fsl_A 339 FDYLLN----QRGMFSYTGL----SAAQVDRLR-EEFGVYLIASG--------RMCVAGLNTANVQRVAKAFA 394 (397)
T ss_dssp CTHHHH----CCSSEEECCC----CHHHHHHHH-HTTCEECCTTC--------EEEGGGCCTTTHHHHHHHHH
T ss_pred ceeecC----CceEEEecCC----CHHHHHHHH-HhCCEEECCCC--------eEEEEecCHhhHHHHHHHHH
Confidence 776665 3444454443 445555555 56699998763 888754 3444555555554
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=227.05 Aligned_cols=313 Identities=9% Similarity=0.007 Sum_probs=209.9
Q ss_pred CChHHHHHHHccCC---C--CCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHH--HHHHHccCCC--------
Q 017726 19 HIPDQVIRAMNRNN---E--DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAW--ESALTNTLSP-------- 83 (367)
Q Consensus 19 ~~~~~v~~a~~~~~---~--~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al--~~~~~~~~~~-------- 83 (367)
++++.+.+++.+.. . ....|.......++|+.++++++++++ +|++|+|+++++ .+++.++..+
T Consensus 48 ~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~-~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~ 126 (422)
T 3d6k_A 48 DLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPAD-LVVAQDGSSLNIMFDLISWSYTWGNNDSSRPW 126 (422)
T ss_dssp HTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHTCCGG-GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCG
T ss_pred CCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhCCChh-HEEEecchHHHHHHHHHHHHhcCccccccccc
Confidence 45556777776542 1 122343334467999999999998764 599999999987 5566665544
Q ss_pred ----CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEE-EEecCCCccccccHH-
Q 017726 84 ----GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAIC-IVHNETATGVTNNLS- 157 (367)
Q Consensus 84 ----gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~-~~~~~n~tG~~~~~~- 157 (367)
+|+|++..|.|+++. ..++..|.+++.++.+.++ +|++++++++++ .++++|+ +++|+||||.++|.+
T Consensus 127 ~~~d~~~Vl~~~p~y~~~~--~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~---~~~~~v~~~~~~~NPtG~~~~~~~ 200 (422)
T 3d6k_A 127 SAEEKVKWLCPVPGYDRHF--TITEHFGFEMINVPMTDEG-PDMGVVRELVKD---PQVKGMWTVPVFGNPTGVTFSEQT 200 (422)
T ss_dssp GGSSCCEEEEEESCCHHHH--HHHHHHTCEEEEEEEETTE-ECHHHHHHHHTS---TTEEEEEECCSSCTTTCCCCCHHH
T ss_pred ccCCCCEEEEeCCccHHHH--HHHHHcCCEEEecCCCCCC-CCHHHHHHHHhc---CCCeEEEEcCCCCCCCCCCCCHHH
Confidence 347999999887654 5567789999999987654 899999999974 3678888 789999999999877
Q ss_pred --HHHHHHH-hcCCCcEEEEeeeeccCce-----e-ecc-------ccccceEEEecCCCcccCCCcceeeeeCHHHHHH
Q 017726 158 --KVRKLLD-EYRHPALFLVDGVSSICAI-----D-FRM-------DEWGIDVALTGSQKALSLPTGMGIVCASPKALEA 221 (367)
Q Consensus 158 --~i~~~~~-~~~~~~~vi~D~~~~~~~~-----~-~~~-------~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~ 221 (367)
+|.++|+ + +|++||+|++|+.+.+ . .+. ...+.++++.|+||+..+..++|+++++++++++
T Consensus 201 l~~l~~~~~~~--~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~GlriG~~~~~~~l~~~ 278 (422)
T 3d6k_A 201 CRELAEMSTAA--PDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGSGVSFFASSKENIEW 278 (422)
T ss_dssp HHHHHHCCCSS--TTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTTSSCEEEECCHHHHHH
T ss_pred HHHHHHHHhhc--cCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCcccceEEEEeCHHHHHH
Confidence 6666666 7 9999999999973111 0 111 1235789999999984322347999999998887
Q ss_pred hccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHHHH----cC-C
Q 017726 222 SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF--EEGLENVIERHRRLGKATRLAVEA----WG-L 294 (367)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~--~~g~~~~~~~~~~~~~~l~~~L~~----~g-~ 294 (367)
+.... .. ..++.+.....++..+++... +.-+++.++.++++++.+.+.|++ .| +
T Consensus 279 l~~~~-------------~~-----~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~ 340 (422)
T 3d6k_A 279 YASHA-------------NV-----RGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVA 340 (422)
T ss_dssp HHHHH-------------HH-----HCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred HHHHH-------------Hh-----hcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCce
Confidence 76321 00 012355544444444543311 112566777778888888888876 23 4
Q ss_pred ccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEcc-CCCC-----CCCcEEEEeecC-CCCHHHHHHhhh
Q 017726 295 KNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGL-GLNK-----VAGKVFRIGHLG-HLNEVMFNFQLL 364 (367)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~-g~~~-----~~~~~iRi~~~~-~~~~~~~~~~~l 364 (367)
.+..+ ..+.+++++++.. +..++.+.|. ++||.+.+ |..+ ...+++||++.. ..++.+...+.|
T Consensus 341 ~~~~p----~~g~~~~~~~~~~-~~~~~~~~l~-~~gV~v~~~g~~f~~~~~~~~~~iRis~~~~~~e~i~~~~~~l 411 (422)
T 3d6k_A 341 KWTSP----TGGYFISVDVVPG-TASRVVELAK-EAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAELEVAMDGF 411 (422)
T ss_dssp EECCC----SBSSCEEEEESTT-CHHHHHHHHH-HTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHH
T ss_pred EEeCC----CcceEEEEECCCC-CHHHHHHHHH-HCCeEEEcCccccCCCCCCCCCeEEEecCCCCHHHHHHHHHHH
Confidence 54444 3456788888644 5677777775 56999998 4322 124689999764 333333333333
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-28 Score=220.86 Aligned_cols=319 Identities=12% Similarity=0.094 Sum_probs=223.8
Q ss_pred cccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeEE
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRII 88 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl 88 (367)
.+.+..+...+++ +.+++.+...... +.......++++.++++++.+ .+++++||++|+..++.++ +.+||+|+
T Consensus 8 ~~~l~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~l~~~la~~~~~~---~~~~~~~gt~a~~~~~~~~~~~~gd~v~ 82 (374)
T 3uwc_A 8 YSYLERQFADIEP-YLNDLREFIKTAD-FTLGAELEKFEKRFAALHNAP---HAIGVGTGTDALAMSFKMLNIGAGDEVI 82 (374)
T ss_dssp SCCHHHHTSSCHH-HHHHHHHHHHHTC-CSSCHHHHHHHHHHHHHTTCS---EEEEESCHHHHHHHHHHHTTCCTTCEEE
T ss_pred eeccccCCCCchH-HHHHHHHHHHcCC-cccChhHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHcCCCCCCEEE
Confidence 4556667777777 8888776543222 223467889999999999976 3788999999999999998 89999999
Q ss_pred EEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCC
Q 017726 89 SFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRH 168 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~ 168 (367)
++.+.|++.. ..++..|.+++.++.+.++.+|+++++++++ +++++|+ ++||||.+.|+++|.++|++ +
T Consensus 83 ~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~v~---~~n~~G~~~~~~~i~~~~~~--~ 151 (374)
T 3uwc_A 83 TCANTFIASV--GAIVQAGATPVLVDSENGYVIDPEKIEAAIT----DKTKAIM---PVHYTGNIADMPALAKIAKK--H 151 (374)
T ss_dssp EESSSCHHHH--HHHHHTTCEEEEECBCTTSSBCGGGTGGGCC----TTEEEEC---CBCGGGCCCCHHHHHHHHHH--T
T ss_pred ECCCccHHHH--HHHHHcCCEEEEEecCCCCCcCHHHHHHhCC----CCceEEE---EeCCcCCcCCHHHHHHHHHH--c
Confidence 9999888754 4567889999999998778899999999987 4668777 88999999999999999999 9
Q ss_pred CcEEEEeeeeccCceeecccccc--ceEEEecCC--CcccCCCcceeeeeCH-HHHHHhccCCCCceeechHHHHHHhhc
Q 017726 169 PALFLVDGVSSICAIDFRMDEWG--IDVALTGSQ--KALSLPTGMGIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNL 243 (367)
Q Consensus 169 ~~~vi~D~~~~~~~~~~~~~~~~--~d~~~~s~~--K~~~g~~g~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (367)
|+++|+|++|+.+.. ++....+ .|++++|+| |+++++...|+++.++ ++.+++.......... .+..
T Consensus 152 ~~~li~D~~~~~g~~-~~~~~~~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 223 (374)
T 3uwc_A 152 NLHIVEDACQTILGR-INDKFVGSWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLIN-------RDVC 223 (374)
T ss_dssp TCEEEEECTTCTTCE-ETTEETTSSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEE-------TTEE
T ss_pred CCEEEEeCCCccCce-eCCeeccccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCccc-------cCcc
Confidence 999999999998764 3333333 699999966 9996523357777654 5655555432211110 0110
Q ss_pred CCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-C-CccccCCC-ccCCCceEEEEcCCCCCHH
Q 017726 244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-G-LKNCTQKE-EWFSDTVTAVIVPSHINSS 320 (367)
Q Consensus 244 ~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g-~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 320 (367)
... .++... ..+.+++......+++++.++..++++++.+.|++. + +.+..... .......+.+.. .+..
T Consensus 224 ~~~-~~~~~~---~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 296 (374)
T 3uwc_A 224 VEY-GINCRM---DTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRV---KYRD 296 (374)
T ss_dssp SSC-CCBCBC---CHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEE---TTHH
T ss_pred ccc-cccCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEc---CCHH
Confidence 100 001111 234556666566667888889999999999999887 4 65533211 112222333443 2678
Q ss_pred HHHHHHHhhCCeEEccCCC-CC----------------------CCcEEEEeecCCCCHHHHH
Q 017726 321 EIVRRAWQRYNLSLGLGLN-KV----------------------AGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 321 ~l~~~L~~~~gv~v~~g~~-~~----------------------~~~~iRi~~~~~~~~~~~~ 360 (367)
++.+.|.++ ||.+++++. +. ....+|++++...+++|+.
T Consensus 297 ~l~~~L~~~-gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~ 358 (374)
T 3uwc_A 297 QLFQYLKDN-GIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEIN 358 (374)
T ss_dssp HHHHHHHHT-TBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHH
T ss_pred HHHHHHHHC-CCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHH
Confidence 899999765 999988761 10 0157999988877765543
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=221.78 Aligned_cols=313 Identities=13% Similarity=0.019 Sum_probs=211.3
Q ss_pred CCCCChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhcCC-----CCc--eEEecCChhHHHHHHH--HccCCCC
Q 017726 16 GPVHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTT-----SGT--PFLIPTTGTGAWESAL--TNTLSPG 84 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~-----~~~--~v~~~~ggt~al~~~~--~~~~~~g 84 (367)
+++++++.+.+++.+.... ...|.......++|+.++++++.. .++ ++++|+||++|+..++ .+++.+|
T Consensus 64 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~g 143 (420)
T 4f4e_A 64 GKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPK 143 (420)
T ss_dssp SCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTT
T ss_pred CCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHhCCC
Confidence 4556668899988874332 122333344568888898888542 234 6999999999999984 4567899
Q ss_pred CeEEEEeCCcchHHHHHHHHHhCCceEEEeC--CCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHH
Q 017726 85 DRIISFLIGQFSLLWIDQQQRLNFNVDVVES--DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKV 159 (367)
Q Consensus 85 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i 159 (367)
|+|+++.|.|.++ ...++..|.+++.++. +.++.+|++++++++++.+ ++++++++++|+||||.+++ +++|
T Consensus 144 d~Vlv~~p~~~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-~~~~~v~i~~p~NPtG~~~~~~~l~~i 220 (420)
T 4f4e_A 144 AKVAISDPSWENH--RALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYE-PGTIVVLHACCHNPTGVDLNDAQWAQV 220 (420)
T ss_dssp CCEEEEESCCHHH--HHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCC-TTCEEEEECSSCTTTCCCCCHHHHHHH
T ss_pred CEEEEeCCCcHhH--HHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCC-CCCEEEEeCCCCCCCCCCCCHHHHHHH
Confidence 9999999988774 3567789999999998 3467889999999998643 46799999999999999986 5578
Q ss_pred HHHHHhcCCCcEEEEeeeeccCceee-----c---c-ccccceEEEecCCCcccCCCc--ceeeee---CHHHHHHhccC
Q 017726 160 RKLLDEYRHPALFLVDGVSSICAIDF-----R---M-DEWGIDVALTGSQKALSLPTG--MGIVCA---SPKALEASKTA 225 (367)
Q Consensus 160 ~~~~~~~~~~~~vi~D~~~~~~~~~~-----~---~-~~~~~d~~~~s~~K~~~g~~g--~g~~~~---~~~~~~~~~~~ 225 (367)
.++|++ +|+++|+|++|+.+.... . . ...+.++++.|+||.++ ++| +|++++ +++.++++...
T Consensus 221 ~~~~~~--~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~~~~~~~~~~~~~~~~~ 297 (420)
T 4f4e_A 221 VEVVKA--RRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFS-LYGERVGALSIITDSKDEAARVLSQ 297 (420)
T ss_dssp HHHHHH--HTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTT-CGGGCEEEEEEECSSHHHHHHHHHH
T ss_pred HHHHHH--CCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCc-CcCCCcEEEEEEcCCHHHHHHHHHH
Confidence 888999 999999999987554321 1 0 12356799999999995 555 688753 55655443211
Q ss_pred CCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH-----HhChHHHHHHHHHHHHHHHHHHHHc----CCcc
Q 017726 226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-----EEGLENVIERHRRLGKATRLAVEAW----GLKN 296 (367)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~-----~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~ 296 (367)
.......+ ..+++.....++..++.... +..++++++++.++++++.+.|+++ |+.+
T Consensus 298 ------------~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 363 (420)
T 4f4e_A 298 ------------LKRVIRTN--YSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSF 363 (420)
T ss_dssp ------------HHHHHHTT--TSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTH
T ss_pred ------------HHHHHhcc--cCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcee
Confidence 00010011 11233333333333333211 1226788899999999999999997 5666
Q ss_pred ccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHhhhh
Q 017726 297 CTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQLLF 365 (367)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 365 (367)
..+ ..+.++++.+ +.+.+.+.| +++||.+.++. |+++.. ..++.+...+.|.
T Consensus 364 ~~~----~~g~~~~~~~----~~~~~~~~l-~~~gI~v~~~~--------Ris~~~~~~~~i~~~~~~l~ 416 (420)
T 4f4e_A 364 INA----QRGMFSYSGL----TSAQVDRLR-EEFGIYAVSTG--------RICVAALNTRNLDVVANAIA 416 (420)
T ss_dssp HHH----SCSSEEECCC----CHHHHHHHH-HHHCEECCTTS--------EEEGGGCCTTTHHHHHHHHH
T ss_pred ECC----CccEEEEeCC----CHHHHHHHH-HhCCEEecCCC--------eEEEecCCHHHHHHHHHHHH
Confidence 655 3454444433 455555555 55699998752 888754 4445555555554
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=222.67 Aligned_cols=288 Identities=16% Similarity=0.072 Sum_probs=194.1
Q ss_pred CCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcc
Q 017726 16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF 95 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~ 95 (367)
|++++++++++++..+ .++ ....+++++.+++++|.++++++++++||++|+..++.++ +||+|+++.+.|+
T Consensus 38 ~~~~~~~~v~~a~~~~----~~~--~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~ 109 (374)
T 2aeu_A 38 GGFLIDEKDKALLNTY----IGS--SYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL--KPKKVIHYLPELP 109 (374)
T ss_dssp CCCCCCHHHHHHHTST----THH--HHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH--CCSEEEEECSSSS
T ss_pred CCCCCCHHHHHHHHHh----cCc--hHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC--CCCEEEEecCCCC
Confidence 5889999999999832 222 3444677888888999854356899999999999999887 9999999999766
Q ss_pred hHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccE-EEEEecCCCcc-ccccHHHHHHHHHhcCCCcEE
Q 017726 96 SLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKA-ICIVHNETATG-VTNNLSKVRKLLDEYRHPALF 172 (367)
Q Consensus 96 ~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~l-v~~~~~~n~tG-~~~~~~~i~~~~~~~~~~~~v 172 (367)
++. +...++..|++++.+ .|+++++++ + +++++ |++++|+|||| ...++++|.++|++ +|+++
T Consensus 110 ~~~~~~~~~~~~g~~~~~v-------~d~~~l~~~-~----~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~--~~~~l 175 (374)
T 2aeu_A 110 GHPSIERSCKIVNAKYFES-------DKVGEILNK-I----DKDTLVIITGSTMDLKVIELENFKKVINTAKN--KEAIV 175 (374)
T ss_dssp CCTHHHHHHHHTTCEEEEE-------SCHHHHHTT-C----CTTEEEEEECBCTTSCBCCHHHHHHHHHHHHH--HTCCE
T ss_pred ccHHHHHHHHHcCcEEEEe-------CCHHHHHhc-C----CCccEEEEEccCCCCCCCCcccHHHHHHHHHH--cCCEE
Confidence 542 223677789998888 278998887 4 57899 99999999999 88899999999999 99999
Q ss_pred EEeeeeccCce-ee-c--cccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccC
Q 017726 173 LVDGVSSICAI-DF-R--MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP 248 (367)
Q Consensus 173 i~D~~~~~~~~-~~-~--~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (367)
|+|++|+.+.. +. . ....+.|++++|+||+++|+ ++|++++++++++++.... ...+
T Consensus 176 i~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~-~~G~~~~~~~~~~~l~~~~--------------~~~~---- 236 (374)
T 2aeu_A 176 FVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGP-RGGLLAGKKELVDKIYIEG--------------TKFG---- 236 (374)
T ss_dssp EEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSC-SCEEEEEEHHHHHHHHHHH--------------HTTT----
T ss_pred EEECCcccccccccccCCccccCCcEEEecCcccccCc-ceEEEEECHHHHHHHHHhh--------------cccc----
Confidence 99999876431 10 1 12246799999999999765 6799999999988776421 0001
Q ss_pred CCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH----HHHHHH----c----CCccccCCCccCCCceEEE-EcCC
Q 017726 249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKAT----RLAVEA----W----GLKNCTQKEEWFSDTVTAV-IVPS 315 (367)
Q Consensus 249 ~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l----~~~L~~----~----g~~~~~~~~~~~~~~~~~~-~~~~ 315 (367)
.+++...+.++.++++.+. . +..++..++++.+ ++.|++ . |+.+..+ ..+.+++. ..++
T Consensus 237 ~~~~~~~~~a~~~al~~~~---~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~----~~g~~~~~~~~~~ 308 (374)
T 2aeu_A 237 LEAQPPLLAGIYRALKNFN---L-ERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERT----PTGFVIKRVYKDD 308 (374)
T ss_dssp CBCCHHHHHHHHHHHHHCC---H-HHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEEC----SSEEEEEEEESSH
T ss_pred CCCCHHHHHHHHHHHHHHh---H-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeC----CceEEEEeecccc
Confidence 1355555555666665531 1 1233344444444 444444 1 3333222 13323222 2211
Q ss_pred CCC---HHHHHHHHHhhCCeEEccCCCC-CCCcEEEEeecC
Q 017726 316 HIN---SSEIVRRAWQRYNLSLGLGLNK-VAGKVFRIGHLG 352 (367)
Q Consensus 316 ~~~---~~~l~~~L~~~~gv~v~~g~~~-~~~~~iRi~~~~ 352 (367)
..+ ..+++..+.+++||.+.+|... ..++++||++..
T Consensus 309 ~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~ 349 (374)
T 2aeu_A 309 TINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTS 349 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTS
T ss_pred cccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCC
Confidence 001 1226666666679999998642 334579999754
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-28 Score=223.52 Aligned_cols=318 Identities=9% Similarity=-0.022 Sum_probs=208.0
Q ss_pred ccccCCCCCChHHHHHHHccCCC--CCCCCcHHHHHHHHHHHHHHHhcCCC-----CceEEe--cCChhHHHHHHHHcc-
Q 017726 11 HLFVPGPVHIPDQVIRAMNRNNE--DYRSPAVPALTKTLLEDIKKIFKTTS-----GTPFLI--PTTGTGAWESALTNT- 80 (367)
Q Consensus 11 ~~~~~~p~~~~~~v~~a~~~~~~--~~~~~~~~~~~~~~~~~la~~~~~~~-----~~~v~~--~~ggt~al~~~~~~~- 80 (367)
+++.++|+++.+++.+++.+... ...+|.......++|+.++++++... +++|++ |+||++++..++.++
T Consensus 38 ~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~ 117 (401)
T 7aat_A 38 YRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQ 117 (401)
T ss_dssp CCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHH
T ss_pred EECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHH
Confidence 33556677777778887665422 22233323346689999999887541 345766 999999999877654
Q ss_pred --CCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc-
Q 017726 81 --LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN- 155 (367)
Q Consensus 81 --~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~- 155 (367)
+.+||+|+++.|.|.++. ..++..|.+++.++.+ .++.+|++++++.+++.+ ++++++++++||||||.+++
T Consensus 118 ~~~~~gd~Vlv~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~v~i~~p~NPtG~~~~~ 194 (401)
T 7aat_A 118 RFFKFSRDVYLPKPSWGNHT--PIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIP-EKSIILLHACAHNPTGVDPRQ 194 (401)
T ss_dssp HHCTTCCEEEEEESCCTTHH--HHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSC-TTCEEEEESSSCTTTCCCCCH
T ss_pred HhccCCCEEEEcCCCchhHH--HHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCC-CCcEEEEeCCCCCCCCCCCCH
Confidence 489999999999887753 5577889999999975 357899999998887643 57899999999999998876
Q ss_pred --HHHHHHHHHhcCCCcEEEEeeeeccCcee-e-----c----cccccceEEEecCCCcccCCCc--ceeeee---CHHH
Q 017726 156 --LSKVRKLLDEYRHPALFLVDGVSSICAID-F-----R----MDEWGIDVALTGSQKALSLPTG--MGIVCA---SPKA 218 (367)
Q Consensus 156 --~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-~-----~----~~~~~~d~~~~s~~K~~~g~~g--~g~~~~---~~~~ 218 (367)
+++|.++|++ +|+++++|++|...... . . ....+..+++.|+||.++ ++| +|++++ +++.
T Consensus 195 ~~l~~i~~~~~~--~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~-~~G~RiG~l~~~~~~~~~ 271 (401)
T 7aat_A 195 EQWKELASVVKK--RNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMG-LYGERAGAFTVICRDAEE 271 (401)
T ss_dssp HHHHHHHHHHHH--TTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC-CGGGCEEEEEEECSSHHH
T ss_pred HHHHHHHHHHHh--CCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccc-cccCceEEEEEEeCCHHH
Confidence 6778888999 99999999998754321 1 0 122346789999999984 556 688775 5554
Q ss_pred HHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHH--H-H--HhChHHHHHHHHHHHHHHHHHHHHcC
Q 017726 219 LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL--I-F--EEGLENVIERHRRLGKATRLAVEAWG 293 (367)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~--~-~--~~g~~~~~~~~~~~~~~l~~~L~~~g 293 (367)
.+.+.... ....... ...++.....+...++.. + . ...+++.++++.++++++.+.|++++
T Consensus 272 ~~~~~~~~------------~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 337 (401)
T 7aat_A 272 AKRVESQL------------KILIRPM--YSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEG 337 (401)
T ss_dssp HHHHHHHH------------HHHHHHH--HSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH------------HHHHHhc--cCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33332110 0000000 112333222222222221 1 0 11267788899999999999999975
Q ss_pred ----CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCC-CCHHHHHHhhhh
Q 017726 294 ----LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH-LNEVMFNFQLLF 365 (367)
Q Consensus 294 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~-~~~~~~~~~~l~ 365 (367)
+.+..+ ..+++.+..+ +. +.++.|.+++||.+.++ +||++... .++.+...++|+
T Consensus 338 ~~~~~~~~~~----~~~~~~~~~~----~~-~~~~~ll~~~gi~v~~~--------~Ris~~~~~~~~i~~~~~~l~ 397 (401)
T 7aat_A 338 SSHNWQHITD----QIGMFCFTGL----KP-EQVERLTKEFSIYMTKD--------GRISVAGVASSNVGYLAHAIH 397 (401)
T ss_dssp CCSCCHHHHH----CCSSEEECCC----CH-HHHHHHHHHHCEECCTT--------CEEEGGGCCTTTHHHHHHHHH
T ss_pred CCCCCceecC----CcceEEecCC----CH-HHHHHHHHhCCEeccCC--------CeEEeccCChhhHHHHHHHHH
Confidence 555554 3454444433 44 44466666779998653 68887543 333555555554
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-29 Score=229.51 Aligned_cols=309 Identities=10% Similarity=0.012 Sum_probs=199.6
Q ss_pred CcccccCCCCCCh----HHHHHHHccCCCCC------CCCcHHHHHHHHHHHHHHHh------cCCCCceEEecCChhHH
Q 017726 9 KNHLFVPGPVHIP----DQVIRAMNRNNEDY------RSPAVPALTKTLLEDIKKIF------KTTSGTPFLIPTTGTGA 72 (367)
Q Consensus 9 ~~~~~~~~p~~~~----~~v~~a~~~~~~~~------~~~~~~~~~~~~~~~la~~~------~~~~~~~v~~~~ggt~a 72 (367)
..+.+..|-+... +.+.+++.+..... ..|.......++|+.+++++ ++++ ++|++|+|+++|
T Consensus 32 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~t~a 110 (417)
T 3g7q_A 32 GAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEP-QNIALTNGSQSA 110 (417)
T ss_dssp CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCG-GGEEEESCHHHH
T ss_pred CceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCc-ccEEEeCCcHHH
Confidence 4456666544442 44555555432111 12333344567888888877 3444 469999999999
Q ss_pred HHHHHHccCCCCC-----eEEEE-eCCcchHHHH-HHH---HHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEE
Q 017726 73 WESALTNTLSPGD-----RIISF-LIGQFSLLWI-DQQ---QRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAI 141 (367)
Q Consensus 73 l~~~~~~~~~~gd-----~vl~~-~~~~~~~~~~-~~~---~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv 141 (367)
+..++.+++.+|| +|+++ .|.|+++... ... ...+..+..++.+. ++.+|+++++ +. +++++|
T Consensus 111 l~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~----~~~~~v 184 (417)
T 3g7q_A 111 FFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--IG----EETGMI 184 (417)
T ss_dssp HHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--CC----TTEEEE
T ss_pred HHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhc--cc----cCceEE
Confidence 9999999998987 88887 7877665311 101 11233444444331 3467899887 44 578999
Q ss_pred EEEecCCCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCCcceeee
Q 017726 142 CIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVC 213 (367)
Q Consensus 142 ~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~ 213 (367)
++++|+||||.++| +++|.++|++ +|+++|+|++|+.... .......+.++++.|+||+..+..++|+++
T Consensus 185 ~~~~p~NptG~~~~~~~~~~l~~~a~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~ 262 (417)
T 3g7q_A 185 CVSRPTNPTGNVITDEELMKLDRLANQ--HNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSKLGLPGSRCGIII 262 (417)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHH--TTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGGGTCTTSCCEEEE
T ss_pred EECCCCCCCCCccCHHHHHHHHHHHHH--cCCEEEEeCCCccccccccccccccCCCCCEEEEEechhccCCCcceEEEE
Confidence 99999999999998 7888999999 9999999999974221 111122367899999999543334479999
Q ss_pred eCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC----hHH-HHHHHHHHHHHHHHH
Q 017726 214 ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG----LEN-VIERHRRLGKATRLA 288 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g----~~~-~~~~~~~~~~~l~~~ 288 (367)
.++++++++..... . . .++++.....++..++ .... +.+ +++++.++++.+.+.
T Consensus 263 ~~~~~~~~~~~~~~-------------~--~---~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (417)
T 3g7q_A 263 ANDKTITAIANMNG-------------I--I---SLAPGGMGPAMMCEMI---KRNDLLRLSETVIKPFYYQRVQQTIAI 321 (417)
T ss_dssp CCHHHHHHHHHHHH-------------H--H---CCCCCSHHHHHHHHHH---HTTCHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHhhc-------------c--e---eeCCCcHHHHHHHHHH---cCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887764210 0 0 1123333223333333 3222 222 566778888888888
Q ss_pred HHHc----CCccccCCCccCCCceEEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCCCC---------CcEEEEeecC
Q 017726 289 VEAW----GLKNCTQKEEWFSDTVTAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNKVA---------GKVFRIGHLG 352 (367)
Q Consensus 289 L~~~----g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~~gv~v~~g~~~~~---------~~~iRi~~~~ 352 (367)
|++. ++.+..+ ..+.++++.++. +.+..++.+.|. ++||.+.+|..+.. .+++||++..
T Consensus 322 l~~~l~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~ 394 (417)
T 3g7q_A 322 IRRYLSEERCLIHKP----EGAIFLWLWFKDLPITTELLYQRLK-ARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP 394 (417)
T ss_dssp HHHHCCTTTCEEECC----CBSSEEEEECTTCSSCHHHHHHHHH-HTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS
T ss_pred HHHhcccCCceeeCC----CcceEEEEEcCCCCCCHHHHHHHHH-HCCEEEECchhhCCCCccccccCCCeEEEEecC
Confidence 8873 3566555 355678888865 578899999995 55999998754322 4689999765
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-27 Score=215.53 Aligned_cols=216 Identities=15% Similarity=0.137 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
....+++++.+++++|.+ ++++++||++|+..++.+++.+||.|+++.+.|.++. +...++..|++++.++.+
T Consensus 61 ~~~~~~l~~~ia~~~g~~---~~i~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-- 135 (404)
T 1e5e_A 61 NPTVSNLEGKIAFLEKTE---ACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-- 135 (404)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT--
T ss_pred ChHHHHHHHHHHHHhCCC---cEEEeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC--
Confidence 356779999999999985 3677788899999999988999999999999888754 323577889999999875
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ +++++|++++|+||||.+.|+++|.++|++. +|+++++|++|+.+....+. ..++|+++.|
T Consensus 136 ---d~~~l~~~i~----~~t~~v~l~~p~NptG~v~~l~~i~~la~~~-~~~~li~De~~~~~~~~~~~-~~~~di~~~S 206 (404)
T 1e5e_A 136 ---IPGEVKKHMK----PNTKIVYFETPANPTLKIIDMERVCKDAHSQ-EGVLVIADNTFCSPMITNPV-DFGVDVVVHS 206 (404)
T ss_dssp ---STTHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHTS-TTCEEEEECTTTCTTTCCGG-GGTCSEEEEE
T ss_pred ---CHHHHHHhcC----CCCcEEEEECCCCCCCcccCHHHHHHHHHhh-cCCEEEEECCCchhhhCCcc-ccCCEEEEEc
Confidence 7899999987 4679999999999999999999999999863 58999999999876643233 3579999999
Q ss_pred CCCcccCCCc--ceeeeeCHHHHH-HhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHH
Q 017726 199 SQKALSLPTG--MGIVCASPKALE-ASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~ 275 (367)
+||+++++.+ +|++++++++++ ++....... .....+.....+...+++. ++.+.
T Consensus 207 ~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~-----------------~g~~~~~~~~~~~~~~l~~-----~~~~~ 264 (404)
T 1e5e_A 207 ATKYINGHTDVVAGLICGKADLLQQIRMVGIKDI-----------------TGSVISPHDAWLITRGLST-----LNIRM 264 (404)
T ss_dssp TTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCC-----------------CCCCCCHHHHHHHHHHHTT-----HHHHH
T ss_pred CccccCCCCCCeEEEEEECHHHHHHHHHHHHHhC-----------------CCCCCCHHHHHHHHHhHhH-----HHHHH
Confidence 9999986655 499999999887 666432110 0012444333333333332 34556
Q ss_pred HHHHHHHHHHHHHHHHc
Q 017726 276 ERHRRLGKATRLAVEAW 292 (367)
Q Consensus 276 ~~~~~~~~~l~~~L~~~ 292 (367)
++..++++.+.+.|++.
T Consensus 265 ~~~~~~~~~l~~~l~~~ 281 (404)
T 1e5e_A 265 KAESENAMKVAEYLKSH 281 (404)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 66777888888888775
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-27 Score=216.85 Aligned_cols=310 Identities=15% Similarity=0.125 Sum_probs=207.3
Q ss_pred cccccCCCCCChHHHHHHHccCCCCCC--C------Cc---H-HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNNEDYR--S------PA---V-PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL 77 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~~~~~--~------~~---~-~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~ 77 (367)
.+.+.++..+.++.+.+++.+...... + +. . ....+..++.+++++|.+. ..++++||++|+..++
T Consensus 34 ~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~v~~~~Gs~a~~~al 111 (425)
T 3ecd_A 34 QVELIASENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGH--ANVQPHSGAQANGAVM 111 (425)
T ss_dssp SEECCTTCCCCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHHH
T ss_pred ceeeecccCCCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCC--ceeecCchHHHHHHHH
Confidence 456677777789999999998653211 1 00 0 0223334578889998775 3456899999999999
Q ss_pred HccCCCCCeEEEEeCCcchHH-HHHHHHHhCC--ceEEEeCC-CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccc
Q 017726 78 TNTLSPGDRIISFLIGQFSLL-WIDQQQRLNF--NVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT 153 (367)
Q Consensus 78 ~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~--~~~~v~~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~ 153 (367)
.+++.+||+|++..+.|++.. ........|. +++.++.+ .++.+|++++++++++ +++++|++++|+| |..
T Consensus 112 ~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~~--~~~ 186 (425)
T 3ecd_A 112 LALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQ---HKPSLIIAGFSAY--PRK 186 (425)
T ss_dssp HHHCCTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHH---HCCSEEEEECSCC--CSC
T ss_pred HHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhh---cCCcEEEEccccC--CCc
Confidence 988999999999999887732 2112223344 45555555 3468899999999974 3579999998888 567
Q ss_pred ccHHHHHHHHHhcCCCcEEEEeeeeccCcee----eccccccceEEEecCCCcccCCCcceeeeeC-HHHHHHhccCCCC
Q 017726 154 NNLSKVRKLLDEYRHPALFLVDGVSSICAID----FRMDEWGIDVALTGSQKALSLPTGMGIVCAS-PKALEASKTAKSV 228 (367)
Q Consensus 154 ~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~-~~~~~~~~~~~~~ 228 (367)
.++++|.++|++ +|+++|+|++|..+... ..... .+|+++.|+||+++|+.| |+++.+ +.+.+.+.....
T Consensus 187 ~~l~~i~~l~~~--~~~~li~De~~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g~~~-g~~~~~~~~~~~~~~~~~~- 261 (425)
T 3ecd_A 187 LDFARFRAIADS--VGAKLMVDMAHIAGVIAAGRHANPVE-HAHVVTSTTHKTLRGPRG-GFVLTNDEEIAKKINSAVF- 261 (425)
T ss_dssp CCHHHHHHHHHH--HTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGGGCCCSC-EEEEESCHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHH--cCCEEEEECcChHhhhhcccccCchh-cCcEEEecCCcccCCCCc-EEEEeCCHHHHHHHHhhhC-
Confidence 899999999999 99999999997644321 11111 378999999999977764 999888 456555543211
Q ss_pred ceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCce
Q 017726 229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV 308 (367)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 308 (367)
.+. ..+++...+.++..++....+.++++..++..++++++.+.|++.|+.+..+. ....+
T Consensus 262 --------------~~~--~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~ 322 (425)
T 3ecd_A 262 --------------PGL--QGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDLVTGG---TDNHL 322 (425)
T ss_dssp ---------------------CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CSSSE
T ss_pred --------------ccc--cCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCeeccCC---CCceE
Confidence 011 22355655666666666555455778899999999999999999888876542 23446
Q ss_pred EEEEcCC-CCCHHHHHHHHHhhCCeEEccCC------CCCCCcEEEEeec
Q 017726 309 TAVIVPS-HINSSEIVRRAWQRYNLSLGLGL------NKVAGKVFRIGHL 351 (367)
Q Consensus 309 ~~~~~~~-~~~~~~l~~~L~~~~gv~v~~g~------~~~~~~~iRi~~~ 351 (367)
+++.++. +.+...+.+.|. ++||.+.++. .+.....+|+++.
T Consensus 323 ~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~~p~~~~~~~~~~~iRi~~~ 371 (425)
T 3ecd_A 323 LLVDLRPKGLKGAQVEQALE-RAGITCNKNGIPFDPEKPTITSGIRLGTP 371 (425)
T ss_dssp EEEECGGGTCCHHHHHHHHH-HTTEECEECCCTTCSSCTTTCSEEEEESH
T ss_pred EEEEeCCCCCCHHHHHHHHH-HcCCEecccccCCCCCCCCCccceeccch
Confidence 7777643 456778888885 5599998432 1233457999853
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-29 Score=227.12 Aligned_cols=325 Identities=11% Similarity=0.031 Sum_probs=224.5
Q ss_pred ccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeEEE
Q 017726 11 HLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIIS 89 (367)
Q Consensus 11 ~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl~ 89 (367)
+++.+++.++++++.+++.+...... +.......++++.+++++|.+ .+++++|||+|+..++.++ +.+||+|++
T Consensus 6 ~~l~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~la~~~~~~---~~i~~~sgt~al~~~l~~l~~~~gd~Vi~ 81 (373)
T 3frk_A 6 ASFKPMHDEIEYEIKFKFEEIYKRNW-FILGDEDKKFEQEFADYCNVN---YCIGCGNGLDALHLILKGYDIGFGDEVIV 81 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTC-CSSSHHHHHHHHHHHHHHTSS---EEEEESCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred cCCCcccCCCCHHHHHHHHHHHHCCC-ccCCchHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHcCCCCcCEEEE
Confidence 34556666778888888887543222 233477889999999999975 4889999999999999998 899999999
Q ss_pred EeCCcchHHHHHHHHHhCCceEEEeCC-CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCC
Q 017726 90 FLIGQFSLLWIDQQQRLNFNVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRH 168 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~ 168 (367)
+.++|++.. ..++..|++++.++.+ .++.+|+++++++++ +++++|+ ++||+|.+.|+++|.++|++ +
T Consensus 82 ~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~v~---~~n~~G~~~~l~~i~~l~~~--~ 150 (373)
T 3frk_A 82 PSNTFIATA--LAVSYTGAKPIFVEPDIRTYNIDPSLIESAIT----EKTKAII---AVHLYGQPADMDEIKRIAKK--Y 150 (373)
T ss_dssp ETTSCTHHH--HHHHHHSCEEEEECEETTTTEECGGGTGGGCC----TTEEEEE---EECCTTCCCCHHHHHHHHHH--H
T ss_pred CCCCcHHHH--HHHHHcCCEEEEEeccccccCcCHHHHHHhcC----CCCeEEE---EECCCcCcccHHHHHHHHHH--c
Confidence 999988854 4467789999999987 467889999999987 4678887 66799999999999999999 9
Q ss_pred CcEEEEeeeeccCceeecccccc--ceEEEec--CCCcccCCCcceeeeeC-HHHHHHhccCCCCceeechHHHHHHhhc
Q 017726 169 PALFLVDGVSSICAIDFRMDEWG--IDVALTG--SQKALSLPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNL 243 (367)
Q Consensus 169 ~~~vi~D~~~~~~~~~~~~~~~~--~d~~~~s--~~K~~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (367)
|+++|+|++|+.+.. ++....+ .|++++| ++|+++++...|+++.+ +++.+++...........+ .....
T Consensus 151 ~~~li~D~a~~~g~~-~~~~~~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~ 225 (373)
T 3frk_A 151 NLKLIEDAAQAHGSL-YKGMKVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEKKY----HHIYK 225 (373)
T ss_dssp TCEEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSBTT----BCCSC
T ss_pred CCEEEEECCcccCCE-ECCEeccccccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCcccCC----ccccc
Confidence 999999999998766 4444444 7898888 55999652335777776 4465555432211100000 00001
Q ss_pred CCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCC-CccCCCceEEEEcCCCCCHHHH
Q 017726 244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK-EEWFSDTVTAVIVPSHINSSEI 322 (367)
Q Consensus 244 ~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l 322 (367)
|. .+..+ .+.+++......+++++.++.+++++++.+.|+++++.+.... ........+.+.. .+.+++
T Consensus 226 g~--~~~~~-----~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l 295 (373)
T 3frk_A 226 GF--NSRLD-----ELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPNVIIPVEADYAKHVWYTFVIRS---EKRDEL 295 (373)
T ss_dssp CC--BCCCC-----HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEECCCSSEEEEE---SSHHHH
T ss_pred cc--cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEeccCCCCCceeeEEEEEEe---CCHHHH
Confidence 11 11122 3455555555556788888889999999999887663332211 1112222333443 267889
Q ss_pred HHHHHhhCCeEEccCCC-CC----------------C------CcEEEEeecCCCCHHHHH--Hhhhhc
Q 017726 323 VRRAWQRYNLSLGLGLN-KV----------------A------GKVFRIGHLGHLNEVMFN--FQLLFQ 366 (367)
Q Consensus 323 ~~~L~~~~gv~v~~g~~-~~----------------~------~~~iRi~~~~~~~~~~~~--~~~l~~ 366 (367)
.+.|.++ ||.+++++. +. + ...+|++++...+++|+. .+.|++
T Consensus 296 ~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~ 363 (373)
T 3frk_A 296 QKYLNNN-GIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINA 363 (373)
T ss_dssp HHHHHHT-TBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHC-CCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHH
Confidence 9999765 999997762 11 0 156999988877765544 444443
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-27 Score=219.59 Aligned_cols=309 Identities=17% Similarity=0.139 Sum_probs=210.8
Q ss_pred ccccCCCCCChHHHHHHHccCCCCCC--------CC----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHH
Q 017726 11 HLFVPGPVHIPDQVIRAMNRNNEDYR--------SP----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT 78 (367)
Q Consensus 11 ~~~~~~p~~~~~~v~~a~~~~~~~~~--------~~----~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~ 78 (367)
+.+.++....++.+.+++.+...... .+ ......+.+++.+++++|.+.. .+++++|++++..++.
T Consensus 33 ~~~~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~v~~~sGs~a~~~a~~ 110 (420)
T 3gbx_A 33 IELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYA--NVQPHSGSQANFAVYT 110 (420)
T ss_dssp EECCTTCCCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEE--ECCCSSHHHHHHHHHH
T ss_pred eeeeccCCCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCc--eeEecCcHHHHHHHHH
Confidence 34455555679999999988652211 01 0123345567899999998653 3445667999999999
Q ss_pred ccCCCCCeEEEEeCCcchHH-HHHH--HHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc
Q 017726 79 NTLSPGDRIISFLIGQFSLL-WIDQ--QQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN 155 (367)
Q Consensus 79 ~~~~~gd~vl~~~~~~~~~~-~~~~--~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~ 155 (367)
+++.+||+|++..+.|.+.. .... ....+.....++.+.++.+|+++++++++++ ++++|++++|+|+ ...|
T Consensus 111 ~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~---~~~~v~~~~~~~~--~~~~ 185 (420)
T 3gbx_A 111 ALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEH---KPKMIIGGFSAYS--GVVD 185 (420)
T ss_dssp HHCCTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHH---CCSEEEECCTTCC--SCCC
T ss_pred HhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhc---CCeEEEEecCccC--CccC
Confidence 99999999999999887632 1111 1223445556666767789999999999862 4799999888875 4789
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCCcceeeeeCH---HHHHHhccCCC
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASP---KALEASKTAKS 227 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~---~~~~~~~~~~~ 227 (367)
+++|.++|++ +|+++|+|++|+.+.. +.... .+|++++|+||+++|+.| |+++.++ ++.+.+.....
T Consensus 186 l~~l~~l~~~--~~~~li~De~~~~~~~~~~~~~~~~~--~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~~~~~~~~~~ 260 (420)
T 3gbx_A 186 WAKMREIADS--IGAYLFVDMAHVAGLIAAGVYPNPVP--HAHVVTTTTHKTLAGPRG-GLILAKGGDEELYKKLNSAVF 260 (420)
T ss_dssp HHHHHHHHHH--TTCEEEEECTTTHHHHHTTSSCCSTT--TSSEEEEESSGGGCSCSC-EEEEESSCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHH--cCCEEEEECCcchhceecccCCcccc--cCCEEEeecccCCCCCCc-eEEEEcCCcHHHHHHhhhhcC
Confidence 9999999999 9999999999865432 22222 479999999999987776 9999987 66665543211
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCc
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDT 307 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 307 (367)
.+. .++++...++++..++....+.++++++++..++++++.+.|++.|+++..+. ....
T Consensus 261 ---------------~~~--~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~ 320 (420)
T 3gbx_A 261 ---------------PSA--QGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGG---TENH 320 (420)
T ss_dssp ---------------------CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CSSS
T ss_pred ---------------CCC--CCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCeeccCC---CCCe
Confidence 011 22456666666666665544444778899999999999999999888876531 2344
Q ss_pred eEEEEcCC-CCCHHHHHHHHHhhCCeEEccCC------CCCCCcEEEEeecC
Q 017726 308 VTAVIVPS-HINSSEIVRRAWQRYNLSLGLGL------NKVAGKVFRIGHLG 352 (367)
Q Consensus 308 ~~~~~~~~-~~~~~~l~~~L~~~~gv~v~~g~------~~~~~~~iRi~~~~ 352 (367)
++++.++. +.+...+.+.|. ++||.+.+.. .+..+..+||++..
T Consensus 321 ~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~ 371 (420)
T 3gbx_A 321 LFLLDLVDKNLTGKEADAALG-RANITVNKNSVPNDPKSPFVTSGIRIGSPA 371 (420)
T ss_dssp EEEEECGGGTCCHHHHHHHHH-HTTEECEEECCTTCSSCTTTCSEEEEECHH
T ss_pred EEEEEcCCCCCCHHHHHHHHH-HCCcEeccccCCCCccccCCCcceEEecch
Confidence 66676643 456777888785 5699998721 12234559999754
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=225.75 Aligned_cols=282 Identities=12% Similarity=0.074 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHHh-----cCC-CCceEEecCChhHHHHHHHHccCCCCC----eEEEEeCCcchHHHHHHHHHhCCceE
Q 017726 42 ALTKTLLEDIKKIF-----KTT-SGTPFLIPTTGTGAWESALTNTLSPGD----RIISFLIGQFSLLWIDQQQRLNFNVD 111 (367)
Q Consensus 42 ~~~~~~~~~la~~~-----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~g~~~~ 111 (367)
....++|+.+++++ |.+ .+++|++|+|+++++..++.+++.+|| .|+++.|.|.++. ..++..|.+++
T Consensus 129 ~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~--~~~~~~g~~~v 206 (498)
T 3ihj_A 129 QGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYS--AVISELDAIQV 206 (498)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHH--HHHHHTTCEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHH--HHHHHcCCEEE
Confidence 33446666666665 454 345699999999999999999888875 9999999887643 55677899999
Q ss_pred EEeCCCC--CCCCHHHHHHHHhccCCC-CccEEEEEecCCCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccCcee-
Q 017726 112 VVESDWG--EGAKLDVLASKLAADTAH-TIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAID- 184 (367)
Q Consensus 112 ~v~~~~~--~~~d~e~l~~~i~~~~~~-~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~- 184 (367)
.++.+++ |.+|++++++++++.... ++++|++++|+||||.+++ +++|.++|++ +|++||+|++|+.+...
T Consensus 207 ~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~--~~~~li~De~y~~~~~~~ 284 (498)
T 3ihj_A 207 NYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWE--EKLFLLADEVYQDNVYSP 284 (498)
T ss_dssp EEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--HTCEEEEECTTTTCBCCT
T ss_pred EeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHH--cCcEEEEEcCccccccCC
Confidence 9998753 588999999999863211 5799999999999999987 5668888999 99999999999764331
Q ss_pred ----eccccc-----------cceEEEecCCCcccCCCc--ceeee---eCHHHHHHhccCCCCceeechHHHHHHhhcC
Q 017726 185 ----FRMDEW-----------GIDVALTGSQKALSLPTG--MGIVC---ASPKALEASKTAKSVRVFFDWKDYIKFYNLG 244 (367)
Q Consensus 185 ----~~~~~~-----------~~d~~~~s~~K~~~g~~g--~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (367)
.++... ...+++.|+||.++|.+| +|+++ .++++++.+.... ..
T Consensus 285 ~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~---------------~~- 348 (498)
T 3ihj_A 285 DCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLL---------------SV- 348 (498)
T ss_dssp TCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHH---------------HH-
T ss_pred CCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHH---------------hc-
Confidence 111110 113778899999964333 58887 5888887775321 00
Q ss_pred CccCCCCcHHHHHHHHHHHH----------HHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEc
Q 017726 245 TFWPYTPSIQLLYGLRAALD----------LIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV 313 (367)
Q Consensus 245 ~~~~~~~~~~~~~al~~al~----------~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~ 313 (367)
...++.....++..++. .+.++ .+++++++.++++++.+.|+++ |+.+..+ .++.++++++
T Consensus 349 ---~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~-~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p----~gg~~~~~~l 420 (498)
T 3ihj_A 349 ---RLCPPVSGQAAMDIVVNPPVAGEESFEQFSRE-KESVLGNLAKKAKLTEDLFNQVPGIHCNPL----QGAMYAFPRI 420 (498)
T ss_dssp ---SCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHH-HHHHHHHHHHHHHHHHHHHHTSTTEECCCC----CBSSEECCEE
T ss_pred ---cCCCCHHHHHHHHHHhcCCccCcccHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCcEecCC----CeEEEEEEec
Confidence 11355555555555542 11121 4567788999999999999998 8888776 4555555554
Q ss_pred C-----------CCCCHHHH-HHHHHhhCCeEEccCCCCC---CCcEEEEeec
Q 017726 314 P-----------SHINSSEI-VRRAWQRYNLSLGLGLNKV---AGKVFRIGHL 351 (367)
Q Consensus 314 ~-----------~~~~~~~l-~~~L~~~~gv~v~~g~~~~---~~~~iRi~~~ 351 (367)
. .+.+.+++ +..+++++||.+.+|..+. ...+||+++.
T Consensus 421 ~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~ 473 (498)
T 3ihj_A 421 FIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTIL 473 (498)
T ss_dssp CCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECC
T ss_pred cCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeC
Confidence 2 13455554 5666666799999885543 2357999984
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=220.53 Aligned_cols=304 Identities=12% Similarity=0.040 Sum_probs=204.4
Q ss_pred CcccccCCCCCChHHHHHHHccCCCC---CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCC
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNED---YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGD 85 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd 85 (367)
++.++.+|+.|...++++++.+.... ...|.......++++++++++|.+. .++++||++++..++.+++.+||
T Consensus 11 ~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~---~i~~~~G~~a~~~al~~~~~~gd 87 (357)
T 3lws_A 11 QTTGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGMDD---AVFFPSGTMAQQVALRIWSDETD 87 (357)
T ss_dssp TCSEESSBSSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHTCSE---EEEESCHHHHHHHHHHHHHHHHT
T ss_pred hhcccccCCCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhCCCc---EEEecCcHHHHHHHHHHHhhcCC
Confidence 45567888888888888777664211 1123223567799999999999754 35558889999999988888888
Q ss_pred --eEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCc-ccccc---HHH
Q 017726 86 --RIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETAT-GVTNN---LSK 158 (367)
Q Consensus 86 --~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~t-G~~~~---~~~ 158 (367)
.|++.++.|++.. ....+...|++++.++. .++.+|+++++++. ++++|++++|+||+ |.+++ +++
T Consensus 88 ~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~d~~~l~~~~------~~~~v~~~~p~np~~G~~~~~~~l~~ 160 (357)
T 3lws_A 88 NRTVAYHPLCHLEIHEQDGLKELHPIETILVGA-ADRLMTLDEIKALP------DIACLLLELPQREIGGVAPAFSELET 160 (357)
T ss_dssp CCEEEECTTCHHHHSSTTHHHHHSSCEEEECSC-TTSCCCHHHHHTCC------SCSEEEEESSBGGGTSBCCCHHHHHH
T ss_pred CcEEEecccceeeeeccchhhhccCcEEEEecC-CCCCcCHHHHhcCc------CcceEEEEcccccCCceeCCHHHHHH
Confidence 5665555444432 11234556899888885 45678999998762 36999999999998 98885 888
Q ss_pred HHHHHHhcCCCcEEEEeeeeccCc-----ee-eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceee
Q 017726 159 VRKLLDEYRHPALFLVDGVSSICA-----ID-FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF 232 (367)
Q Consensus 159 i~~~~~~~~~~~~vi~D~~~~~~~-----~~-~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~ 232 (367)
|.++|++ +|++||+|++|.... .. .+.. .+.|+++.|+||+++++.| |+++.++++++++....
T Consensus 161 i~~~~~~--~~~~li~D~a~~~~~~~~~~~~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~~~~~~~~~~~~------ 230 (357)
T 3lws_A 161 ISRYCRE--RGIRLHLDGARLFEMLPYYEKTAAEIA-GLFDSIYISFYKGLGGIAG-AILAGPAAFCQTARIWK------ 230 (357)
T ss_dssp HHHHHHH--TTCEEEEEETTHHHHHHHHTCCHHHHH-TTSSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHH------
T ss_pred HHHHHHH--cCCEEEEECchhhhhhhhcCCChHHHH-hcCCEEEEeccccCCCCce-EEEEcCHHHHHHHHHHH------
Confidence 9999999 999999999876211 11 1111 2478889999999987887 99999999988775321
Q ss_pred chHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccc-cCCCccCCCceEE
Q 017726 233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNC-TQKEEWFSDTVTA 310 (367)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~ 310 (367)
..+ .+. .++.+....+++ ++++. . .+ ..++..++++++.+.|+++ |+++. .+ ...++++
T Consensus 231 ------~~~-~~~--~~~~~~~~~~~~-~~l~~---~-~~-~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~~~~~~~ 291 (357)
T 3lws_A 231 ------RRY-GGD--LISLYPYIVSAD-YYYEL---R-KD-RMGQYYEQAKQLAEQFNALPGVHTTPEV----PVSNMFH 291 (357)
T ss_dssp ------HHT-TCC--CSCCHHHHHHHH-HHHHH---H-TT-CHHHHHHHHHHHHHHHHTSTTEEEESSS----CSSSEEE
T ss_pred ------HHh-cCC--cccchHHHHHHH-HHHHH---H-HH-HHHHHHHHHHHHHHHHHhCCCCeeccCC----CcceEEE
Confidence 001 111 122333222222 33332 1 12 2334677888999999998 88773 33 2345778
Q ss_pred EEcCCC--CCHHHHHHHHHhhCCeEEccCCCCCCC-cEEEEeecC
Q 017726 311 VIVPSH--INSSEIVRRAWQRYNLSLGLGLNKVAG-KVFRIGHLG 352 (367)
Q Consensus 311 ~~~~~~--~~~~~l~~~L~~~~gv~v~~g~~~~~~-~~iRi~~~~ 352 (367)
++++.. .+..++.+.|.++ ||.+++|..+.++ .++|++...
T Consensus 292 ~~~~~~~~~~~~~~~~~l~~~-Gi~v~~g~~~~~~~~~~r~~i~~ 335 (357)
T 3lws_A 292 LHFDGQAADISPKLEQVQEET-GLGFVGYLVDKDGYCSTEISVGD 335 (357)
T ss_dssp EEEESCHHHHHHHHHHHHHHH-CEESCSCCEECSSEEEEEEEBCT
T ss_pred EEecCChHHHHHHHHHHHHhc-CeEEecccccCCCceEEEEEecc
Confidence 887532 2256788888655 9999998544333 369998643
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-27 Score=219.93 Aligned_cols=311 Identities=15% Similarity=0.122 Sum_probs=215.8
Q ss_pred cccccCCCCCChHHHHHHHccCCCCCC-----------CCcHHHHHHHHH-HHHHHHhcCCCCceEEecCChhHHHHHHH
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNNEDYR-----------SPAVPALTKTLL-EDIKKIFKTTSGTPFLIPTTGTGAWESAL 77 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~~~~~-----------~~~~~~~~~~~~-~~la~~~~~~~~~~v~~~~ggt~al~~~~ 77 (367)
.+.+.+++.++++++++++.+...... +.......+++. +++++++|.+. ..++++||++|+..++
T Consensus 47 ~i~l~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~--~~v~~~sGs~a~~~a~ 124 (447)
T 3h7f_A 47 TLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEF--ANVQPHSGAQANAAVL 124 (447)
T ss_dssp SEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHHH
T ss_pred ceeEecCCCCCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCc--eEEEeCCHHHHHHHHH
Confidence 455677888889999999987543111 111222334555 99999999875 3454788999999999
Q ss_pred HccCCCCCeEEEEeCCcchHH---HHHHHHHhCCceEEEeCC-CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccc
Q 017726 78 TNTLSPGDRIISFLIGQFSLL---WIDQQQRLNFNVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT 153 (367)
Q Consensus 78 ~~~~~~gd~vl~~~~~~~~~~---~~~~~~~~g~~~~~v~~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~ 153 (367)
.+++++||+|++..+.|.++. ........+..+..++.+ .++.+|++++++++.+ .++++|++++++||++.
T Consensus 125 ~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~---~~~~~i~~~~~~~~~~~- 200 (447)
T 3h7f_A 125 HALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALE---FRPKVIIAGWSAYPRVL- 200 (447)
T ss_dssp HHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHH---HCCSEEEEECSSCCSCC-
T ss_pred HHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHh---cCCeEEEEcCCCCCCcc-
Confidence 999999999999999876621 100112234556666665 4567899999999965 35689999999998876
Q ss_pred ccHHHHHHHHHhcCCCcEEEEeeeeccCce----eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCc
Q 017726 154 NNLSKVRKLLDEYRHPALFLVDGVSSICAI----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR 229 (367)
Q Consensus 154 ~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~ 229 (367)
++++|.++|++ +|+++|+|++|..+.. ..+.. .++|+++.|+||+++|+.| |++++++++++.+.....+
T Consensus 201 -~l~~i~~l~~~--~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~l~G~~g-G~i~~~~~~~~~l~~~~~~- 274 (447)
T 3h7f_A 201 -DFAAFRSIADE--VGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKTLGGGRS-GLIVGKQQYAKAINSAVFP- 274 (447)
T ss_dssp -CHHHHHHHHHH--HTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGGGCCCSC-EEEEECGGGHHHHHHHHTT-
T ss_pred -CHHHHHHHHHH--cCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcCCCCCCe-EEEEECHHHHHHHhhhcCC-
Confidence 99999999999 9999999999864321 11111 2579999999999988876 9999999887776532111
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-----CCccccCCCccC
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-----GLKNCTQKEEWF 304 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~ 304 (367)
+. .++++...++++.+++....+.++++..++..++++++.+.|++. |+++..+. .
T Consensus 275 --------------~~--~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~---~ 335 (447)
T 3h7f_A 275 --------------GQ--QGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGG---T 335 (447)
T ss_dssp --------------TT--CSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGS---C
T ss_pred --------------cc--cCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCC---C
Confidence 11 234555556777777776555447788899999999999999887 88876521 1
Q ss_pred CCceEEEEcC-CCCCHHHHHHHHHhhCCeEEc----cC--CCCCCCcEEEEeecC
Q 017726 305 SDTVTAVIVP-SHINSSEIVRRAWQRYNLSLG----LG--LNKVAGKVFRIGHLG 352 (367)
Q Consensus 305 ~~~~~~~~~~-~~~~~~~l~~~L~~~~gv~v~----~g--~~~~~~~~iRi~~~~ 352 (367)
...++++.+. .+.+...+.+.| ++.||.+. ++ ..+..+..+||++..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~l-~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~ 389 (447)
T 3h7f_A 336 DVHLVLVDLRDSPLDGQAAEDLL-HEVGITVNRNAVPNDPRPPMVTSGLRIGTPA 389 (447)
T ss_dssp SSSEEEEECTTSSCCHHHHHHHH-HHTTEECBC-------------CEEEEECHH
T ss_pred CCCEEEEEcCCCCCCHHHHHHHH-HHCCeEEecccCCCCCCCCCCCCceeccCHH
Confidence 3345666663 244666666666 55699998 55 445556779998643
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=222.24 Aligned_cols=315 Identities=10% Similarity=0.018 Sum_probs=211.7
Q ss_pred ccccCCCCCChHHHHHHHccCC----CCCCCCcHHHHHHHHHHHHHHHh-cCCC----CceEEe--cCChhHHHHH--HH
Q 017726 11 HLFVPGPVHIPDQVIRAMNRNN----EDYRSPAVPALTKTLLEDIKKIF-KTTS----GTPFLI--PTTGTGAWES--AL 77 (367)
Q Consensus 11 ~~~~~~p~~~~~~v~~a~~~~~----~~~~~~~~~~~~~~~~~~la~~~-~~~~----~~~v~~--~~ggt~al~~--~~ 77 (367)
|++.++|+++.+++.+++.+.. .....|.......++|+.+++++ |.+. +++|++ |+||++|+.+ .+
T Consensus 59 ~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~ 138 (448)
T 3meb_A 59 YRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEF 138 (448)
T ss_dssp CCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHH
T ss_pred ccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHH
Confidence 4466788888999999944322 11222333344678999999988 7662 346899 9999999987 44
Q ss_pred HccCCCCCeEEEEeCCcchHHHHHHHH----HhCCceEEEeC-CCC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCc
Q 017726 78 TNTLSPGDRIISFLIGQFSLLWIDQQQ----RLNFNVDVVES-DWG--EGAKLDVLASKLAADTAHTIKAICIVHNETAT 150 (367)
Q Consensus 78 ~~~~~~gd~vl~~~~~~~~~~~~~~~~----~~g~~~~~v~~-~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~t 150 (367)
.+++.+||+|++++|.|.++. ..++ ..|.+++.++. +.+ +.+|+|++++++++.+ ++++++++++|+|||
T Consensus 139 ~~~~~~gd~Vlv~~p~~~~~~--~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~-~~~~~v~~~~p~NPt 215 (448)
T 3meb_A 139 LHLWMPKAEFYMPSTTWPNHY--GIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAP-EKSIFLFHACAHNPS 215 (448)
T ss_dssp HHHHCTTCCEEEESSCCTHHH--HHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSC-TTCEEEEESSSCTTT
T ss_pred HHHhCCCCEEEECCCCCHhHH--HHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCC-CCcEEEEeCCCCCCC
Confidence 566789999999999887753 4466 78999999998 554 7899999999998643 356888999999999
Q ss_pred cccccH---HHHHHHHHhcCCCcEEEEeeeeccCcee-e-----cc----ccccceEEEecCCCcccCCCc--ceee--e
Q 017726 151 GVTNNL---SKVRKLLDEYRHPALFLVDGVSSICAID-F-----RM----DEWGIDVALTGSQKALSLPTG--MGIV--C 213 (367)
Q Consensus 151 G~~~~~---~~i~~~~~~~~~~~~vi~D~~~~~~~~~-~-----~~----~~~~~d~~~~s~~K~~~g~~g--~g~~--~ 213 (367)
|.+++. ++|.++|++ +|+++++|++|..+... . .. ......+++.|+||.++ ++| +|++ +
T Consensus 216 G~~~~~~~l~~i~~l~~~--~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~RiG~l~~v 292 (448)
T 3meb_A 216 GIDFTEAQWKELLPIMKE--KKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFG-LYGERIGCLHVV 292 (448)
T ss_dssp CCCCCHHHHHHHHHHHHH--HTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSC-CGGGCCEEEEEE
T ss_pred CcCCCHHHHHHHHHHHHH--CCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCC-Cccccceeeeee
Confidence 999875 458899999 99999999998754321 1 01 11234578999999984 555 6887 5
Q ss_pred e--------C-H----HHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH---H--hChHHHH
Q 017726 214 A--------S-P----KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF---E--EGLENVI 275 (367)
Q Consensus 214 ~--------~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~---~--~g~~~~~ 275 (367)
+ + + ++++.+... .. .. ..+++.....++..++.... + ..+++++
T Consensus 293 ~~~~~~~~~~~~~~~~~l~~~l~~~---------------~~-~~--~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~ 354 (448)
T 3meb_A 293 HAGVEGSVEKNKALSAAMVSGMTLQ---------------IR-KT--WSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMS 354 (448)
T ss_dssp CCCCSSSHHHHHHHHHHHHHHHHHH---------------HH-TT--TSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred eccccccccCCHHHHHHHHHHHHHH---------------Hh-cc--cCCccHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 5 3 4 333333211 01 11 12344544444444443211 1 2267888
Q ss_pred HHHHHHHHHHHHHHHHcC---------CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEE
Q 017726 276 ERHRRLGKATRLAVEAWG---------LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVF 346 (367)
Q Consensus 276 ~~~~~~~~~l~~~L~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~i 346 (367)
+++.++++++.+.|+++| +....+ ..+.+.+..+ + .++++.|.+++||.+.+|. .
T Consensus 355 ~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~----~-~~~~~~ll~~~gV~v~~G~-------g 418 (448)
T 3meb_A 355 ARIHRMRSLLHASLAKRKTPGPGSKGTWDHILT----AIGMFTFTGL----T-PEHVDYLKEKWSIYLVKAG-------G 418 (448)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHH----CCSSEEECCC----C-HHHHHHHHHHHCEEECSGG-------G
T ss_pred HHHHHHHHHHHHHHHhhCCCCcCcccccceeCC----CceEEEecCC----C-HHHHHHHHHhCCEEEeCCC-------c
Confidence 899999999999999874 333333 3443443333 3 4677777777799998864 2
Q ss_pred EEeecC-CCCHHHHHHhhhh
Q 017726 347 RIGHLG-HLNEVMFNFQLLF 365 (367)
Q Consensus 347 Ri~~~~-~~~~~~~~~~~l~ 365 (367)
||++.+ ..++.+...+.|.
T Consensus 419 Ris~a~~~~~~i~~~~~~l~ 438 (448)
T 3meb_A 419 RMSMCGLTESNCDYVAEAIH 438 (448)
T ss_dssp EEEGGGCCTTTHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHH
Confidence 998765 4444555555544
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=220.73 Aligned_cols=311 Identities=12% Similarity=-0.017 Sum_probs=211.8
Q ss_pred CCChHHHHHHHccCC--C-CCCCCcHHHHHHHHHHHHHHHh-cCC----CCceEEe--cCChhHHHHHHHH--ccCCCC-
Q 017726 18 VHIPDQVIRAMNRNN--E-DYRSPAVPALTKTLLEDIKKIF-KTT----SGTPFLI--PTTGTGAWESALT--NTLSPG- 84 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~--~-~~~~~~~~~~~~~~~~~la~~~-~~~----~~~~v~~--~~ggt~al~~~~~--~~~~~g- 84 (367)
.++++.+.+++.+.. . ....|.......++|+.+++++ +.. .+++|++ |+||++|+..++. .++.+|
T Consensus 47 ~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~ 126 (412)
T 1ajs_A 47 PWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGT 126 (412)
T ss_dssp CCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSS
T ss_pred ccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCc
Confidence 456688888887753 1 1222333345678999999999 431 2345899 9999999999853 456789
Q ss_pred ----CeEEEEeCCcchHHHHHHHHHhCCc-eEEEeCC--CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc--
Q 017726 85 ----DRIISFLIGQFSLLWIDQQQRLNFN-VDVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN-- 155 (367)
Q Consensus 85 ----d~vl~~~~~~~~~~~~~~~~~~g~~-~~~v~~~--~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~-- 155 (367)
|+|+++.|+|++.. ..++..|.+ ++.++.. .++.+|++++++++++.. ++++++++++|+||||.+++
T Consensus 127 ~~~~d~Vl~~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~v~~~~p~nptG~~~~~~ 203 (412)
T 1ajs_A 127 NNKDTPVYVSSPTWENHN--GVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAP-EFSIFVLHACAHNPTGTDPTPE 203 (412)
T ss_dssp SCCCSCEEEEESCCTHHH--HHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSC-TTCEEEEESSSCTTTCCCCCHH
T ss_pred CCCCCeEEEcCCCcHHHH--HHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhCC-CCcEEEEECCCCCCCCCCCCHH
Confidence 99999999888753 557778999 9999883 456789999999998643 36688889999999999986
Q ss_pred -HHHHHHHHHhcCCCcEEEEeeeeccCcee--------ec-cc-cccceEEEecCCCcccCCCc--ceeeee---CHHHH
Q 017726 156 -LSKVRKLLDEYRHPALFLVDGVSSICAID--------FR-MD-EWGIDVALTGSQKALSLPTG--MGIVCA---SPKAL 219 (367)
Q Consensus 156 -~~~i~~~~~~~~~~~~vi~D~~~~~~~~~--------~~-~~-~~~~d~~~~s~~K~~~g~~g--~g~~~~---~~~~~ 219 (367)
+++|.++|++ +|+++|+|++|...... +. .. ....++++.|+||.++ ++| +|++++ +++..
T Consensus 204 ~l~~l~~~~~~--~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~riG~~~~~~~~~~~~ 280 (412)
T 1ajs_A 204 QWKQIASVMKR--RFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFG-LYNERVGNLTVVAKEPDSI 280 (412)
T ss_dssp HHHHHHHHHHH--HTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSC-CGGGCEEEEEEECSSHHHH
T ss_pred HHHHHHHHHHH--CCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccC-CCCcceEEEEEecCCHHHH
Confidence 5578899999 99999999997644321 11 11 1234588999999985 556 699998 88754
Q ss_pred HHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH-----HhChHHHHHHHHHHHHHHHHHHHHcC-
Q 017726 220 EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-----EEGLENVIERHRRLGKATRLAVEAWG- 293 (367)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~-----~~g~~~~~~~~~~~~~~l~~~L~~~g- 293 (367)
+.+... .......+ ..+++...+.++.++++... +..+++++++++++++++.+.|++++
T Consensus 281 ~~~~~~------------~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 346 (412)
T 1ajs_A 281 LRVLSQ------------MQKIVRVT--WSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKT 346 (412)
T ss_dssp HHHHHH------------HHHHHHTT--TSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHH------------HHHHHhcc--cCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 443210 00101111 11245555556666666432 22467888999999999999999976
Q ss_pred ---CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHhhhh
Q 017726 294 ---LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQLLF 365 (367)
Q Consensus 294 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 365 (367)
+.+..+ ..+.++++.+ + .++...+.+++||.+.++ +||++.. ..++.+...+.|.
T Consensus 347 ~~~~~~~~~----~~~~~~~~~~----~-~~~~~~~l~~~gv~v~~~--------~Ris~~~~~~~~i~~~~~~l~ 405 (412)
T 1ajs_A 347 PGTWNHITD----QIGMFSFTGL----N-PKQVEYLINQKHIYLLPS--------GRINMCGLTTKNLDYVATSIH 405 (412)
T ss_dssp SSCCHHHHH----CCSSEEECCC----C-HHHHHHHHHTTCEECCTT--------SEEEGGGCCTTTHHHHHHHHH
T ss_pred CCCeeEEcC----CCceEEEeCC----C-HHHHHHHHHhCCEEecCC--------cEEEeeeCCHHHHHHHHHHHH
Confidence 666554 3444444433 3 345555556679999864 5998763 4555555555443
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-28 Score=225.32 Aligned_cols=270 Identities=12% Similarity=0.050 Sum_probs=202.8
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC--CCC-
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES--DWG- 118 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~- 118 (367)
....++++.+++ +|.+ +++++++|+|+++..++.+++.+||+|+++.+.|++.. ..+...|++++.++. +.+
T Consensus 57 ~~~~~~~~~la~-~g~~--~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~--~~~~~~G~~~~~v~~~~~~~~ 131 (446)
T 2x3l_A 57 EVILKSMKQVEK-HSDY--DGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVL--HALDISQQEGHFIETHQSPLT 131 (446)
T ss_dssp SHHHHHHHHHCS-CTTE--EEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHH--HHHHHHTCCEEECEEEECTTT
T ss_pred hHHHHHHHHHHh-cCCC--ceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHH--HHHHHcCCeEEEEeCeecccc
Confidence 567899999999 9987 46899999999999999999999999999999888764 345668999999887 544
Q ss_pred ---CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccc
Q 017726 119 ---EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEW 190 (367)
Q Consensus 119 ---~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~ 190 (367)
+.+|++++ +. +++++|++++ +|++|.+.|+++|.++|++ +|+++++|++|+. .. +.+....
T Consensus 132 ~~~~~~d~~~l---~~----~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~--~~~~livDea~~~-~~~f~~~~~~~~~~ 200 (446)
T 2x3l_A 132 NHYNKVNLSRL---NN----DGHKLVVLTY-PNYYGETFNVEEVIKSLHQ--LNIPVLIDEAHGA-HFGLQGFPDSTLNY 200 (446)
T ss_dssp SSEEEEEC--------------CCEEEEES-SCTTSCCCCHHHHHHHHHH--TTCCEEEECTTCT-TTTSTTSCCCGGGG
T ss_pred CcCCCCCHHHH---cC----CCceEEEEEC-CCCCeEecCHHHHHHHHHh--cCCeEEEcchhhh-hhccCCCCCChHHc
Confidence 45788877 33 4679999999 6679999999999999999 9999999999886 22 3344445
Q ss_pred cceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC
Q 017726 191 GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG 270 (367)
Q Consensus 191 ~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g 270 (367)
++|+++.|+||+++++.|+|+++++++.++ .... ......+. .++++...++++.++++.+.+.|
T Consensus 201 g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~-~~~~---------~~~~~~~~-----~~s~~~~~~aal~~a~~~l~~~g 265 (446)
T 2x3l_A 201 QADYVVQSFHKTLPALTMGSVLYIHKNAPY-RENI---------IEYLSYFQ-----TSSPSYLIMASLESAAQFYKTYD 265 (446)
T ss_dssp TCSEEEECHHHHSSSCTTCEEEEEETTCTT-HHHH---------HHHHHHHS-----CSSCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCEEEECCccccccccccEEEEEcCCcCC-HHHH---------HHHHHHHc-----CCCchHHHHHHHHHHHHHHHHhC
Confidence 789999999999988888999999877543 1110 00011122 33578888888888899888887
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEc-cCCCCCCCcEEEEe
Q 017726 271 LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLG-LGLNKVAGKVFRIG 349 (367)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~-~g~~~~~~~~iRi~ 349 (367)
.+++.++..++++++++. |+++..+. ....+++.++ +.+..++.+.|.++ ||.+. +|. .++|++
T Consensus 266 ~~~~~~~~~~l~~~l~~~----g~~~~~~~----~~~~l~i~~~-~~~~~~l~~~L~~~-GI~v~~~g~-----~~iRi~ 330 (446)
T 2x3l_A 266 STLFFAKRAQLIECLENK----GFEMLQVD----DPLKLLIKYE-GFTGHDIQNWFMNA-HIYLELADD-----YQALAI 330 (446)
T ss_dssp CHHHHHHHHHHHHHHHHH----TCEEEECS----STTEEEEECT-TSCHHHHHHHHHHT-TEEESEECS-----SCEEEE
T ss_pred HHHHHHHHHHHHHHHHHc----CCEECcCC----CCeEEEEEeC-CcCHHHHHHHHHHC-CCEEEecCC-----CEEEEE
Confidence 666778888888887776 77776642 2235778875 67888999999876 99987 432 569999
Q ss_pred ecCCCCHH
Q 017726 350 HLGHLNEV 357 (367)
Q Consensus 350 ~~~~~~~~ 357 (367)
+....+.+
T Consensus 331 ~~~~~t~e 338 (446)
T 2x3l_A 331 LPLWHHDD 338 (446)
T ss_dssp CCCCCTTC
T ss_pred eecCCCHH
Confidence 86544433
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.2e-28 Score=222.61 Aligned_cols=309 Identities=11% Similarity=0.010 Sum_probs=210.2
Q ss_pred CCCCChHHHHHHHcc-CCCC--CCCCcHHHHHHHHHHHHHHHhcCC-----CCceEEe--cCChhHHHHHHH--HccCCC
Q 017726 16 GPVHIPDQVIRAMNR-NNED--YRSPAVPALTKTLLEDIKKIFKTT-----SGTPFLI--PTTGTGAWESAL--TNTLSP 83 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~-~~~~--~~~~~~~~~~~~~~~~la~~~~~~-----~~~~v~~--~~ggt~al~~~~--~~~~~~ 83 (367)
++.++++.+.+++.+ .... ...|.......++|+.++++++.. .+++|++ |+||++|+.+++ ...+.+
T Consensus 44 ~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~ 123 (412)
T 1yaa_A 44 GKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFP 123 (412)
T ss_dssp SCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCC
Confidence 334677889998887 5431 112322344678999999998431 2345899 999999999873 344579
Q ss_pred CCeEEEEeCCcchHHHHHHHHHhCCceEEEeC-C-CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHH
Q 017726 84 GDRIISFLIGQFSLLWIDQQQRLNFNVDVVES-D-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSK 158 (367)
Q Consensus 84 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~ 158 (367)
||+|+++.|.|++.. ..++..|.+++.++. + .++.+|++++++++++.. ++++++++++|+||||.+++ +++
T Consensus 124 gd~Vl~~~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~~~~p~nPtG~~~~~~~l~~ 200 (412)
T 1yaa_A 124 DKLVYLSKPTWANHM--AIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAP-EGSIFVLHSCAHNPTGLDPTSEQWVQ 200 (412)
T ss_dssp TCCEEEEESCCTTHH--HHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSC-TTCEEEEECSSCTTTCCCCCHHHHHH
T ss_pred CCEEEEeCCCCccHH--HHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhCC-CCCEEEEeCCCCCCCCCCCCHHHHHH
Confidence 999999999888753 557778999999998 4 367789999999998642 12455566999999999986 556
Q ss_pred HHHHHHhcCCCcEEEEeeeeccCce--------ee-cccccc----ceEEEecCCCcccCCCc--ceeee--e-----CH
Q 017726 159 VRKLLDEYRHPALFLVDGVSSICAI--------DF-RMDEWG----IDVALTGSQKALSLPTG--MGIVC--A-----SP 216 (367)
Q Consensus 159 i~~~~~~~~~~~~vi~D~~~~~~~~--------~~-~~~~~~----~d~~~~s~~K~~~g~~g--~g~~~--~-----~~ 216 (367)
|.++|++ +|+++|+|++|..... ++ ++...+ .++++.|+||.++ ++| +|+++ + ++
T Consensus 201 l~~~~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~GlriG~~~~~~~~~~~~~ 277 (412)
T 1yaa_A 201 IVDAIAS--KNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAG-MYGERVGCFHLALTKQAQNK 277 (412)
T ss_dssp HHHHHHH--TTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSC-CGGGCEEEEEEECCSCTTHH
T ss_pred HHHHHHH--CCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCC-CcCCcceEEEEEecCCCCCH
Confidence 8888999 9999999999864322 11 221112 4688999999984 666 59888 6 55
Q ss_pred H----HHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH-----HhChHHHHHHHHHHHHHHHH
Q 017726 217 K----ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-----EEGLENVIERHRRLGKATRL 287 (367)
Q Consensus 217 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~-----~~g~~~~~~~~~~~~~~l~~ 287 (367)
+ +++++... .. .. ..+++.....++..+++... +..+++++++++++++++.+
T Consensus 278 ~~~~~l~~~l~~~---------------~~-~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 339 (412)
T 1yaa_A 278 TIKPAVTSQLAKI---------------IR-SE--VSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRD 339 (412)
T ss_dssp HHHHHHHHHHHHH---------------HH-TT--TSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------------Hh-hc--cCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 44444321 01 11 12345555556666665432 22478889999999999999
Q ss_pred HHHHcC----CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHh
Q 017726 288 AVEAWG----LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQ 362 (367)
Q Consensus 288 ~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~ 362 (367)
.|++++ +++..+ .++.++++. .+...+ ..+.+++||.+.+ .+||++.. ..++.+...+
T Consensus 340 ~L~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~-~~~l~~~gi~v~~--------~~Ris~~~~~~~~i~~~~~ 402 (412)
T 1yaa_A 340 HLVKLGTPGNWDHIVN----QCGMFSFTG----LTPQMV-KRLEETHAVYLVA--------SGRASIAGLNQGNVEYVAK 402 (412)
T ss_dssp HHHHHTCSSCCTHHHH----CCSSEEECC----CCHHHH-HHHHHHHCEECCT--------TSEEEGGGCCTTTHHHHHH
T ss_pred HHHhhCCCCCeeeecc----CceEEEeeC----CCHHHH-HHHHHhCCEEecc--------CcEEEEccCCHhHHHHHHH
Confidence 999976 777665 344444332 345566 5555566999876 47999764 4455555555
Q ss_pred hhh
Q 017726 363 LLF 365 (367)
Q Consensus 363 ~l~ 365 (367)
+|+
T Consensus 403 ~l~ 405 (412)
T 1yaa_A 403 AID 405 (412)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-27 Score=219.22 Aligned_cols=307 Identities=14% Similarity=0.109 Sum_probs=206.1
Q ss_pred cCCCCCChHHHHHHHccCCCC---C-CC--CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCe
Q 017726 14 VPGPVHIPDQVIRAMNRNNED---Y-RS--PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDR 86 (367)
Q Consensus 14 ~~~p~~~~~~v~~a~~~~~~~---~-~~--~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~ 86 (367)
.|.+.++++++.+++.+.... . .+ .+..+..+++++.+++++|.+ + +++++||++|+..++.++ +.+||+
T Consensus 8 ~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~--~-~i~~~~gt~al~~~~~~~~~~~gd~ 84 (418)
T 2c81_A 8 WPEWPQHSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVP--Y-CVPTTSGSTALMLALEALGIGEGDE 84 (418)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCS--E-EEEESCHHHHHHHHHHHTTCCTTCE
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCC--c-EEEeCCHHHHHHHHHHHcCCCCcCE
Confidence 355566778888888764321 1 11 112344789999999999987 3 677888999999999998 899999
Q ss_pred EEEEeCCcchHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHh
Q 017726 87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDE 165 (367)
Q Consensus 87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~ 165 (367)
|+++.++|++.. ..++..|++++.++.+. ++.+|+++++++++ +++++|+++ ||||...|+++|.++|++
T Consensus 85 Vl~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~----~~~~~v~~~---~~~G~~~~~~~i~~~~~~ 155 (418)
T 2c81_A 85 VIVPSLTWIATA--TAVLNVNALPVFVDVEADTYCIDPQLIKSAIT----DKTKAIIPV---HLFGSMANMDEINEIAQE 155 (418)
T ss_dssp EEEESSSCTHHH--HHHHHTTCEEEEECBCTTTCSBCHHHHGGGCC----TTEEEECCB---CCTTCCCCHHHHHHHHHH
T ss_pred EEECCCccHhHH--HHHHHcCCEEEEEecCCCCCCcCHHHHHHhhC----CCCeEEEEe---CCcCCcccHHHHHHHHHH
Confidence 999999988764 45677899999999876 67899999999987 467888764 589999999999999999
Q ss_pred cCCCcEEEEeeeeccCce-ee-ccccc-cceEEEecCCCcccCCCcceeeeeC-HHHHHHhccCCCCceee-chHH-HHH
Q 017726 166 YRHPALFLVDGVSSICAI-DF-RMDEW-GIDVALTGSQKALSLPTGMGIVCAS-PKALEASKTAKSVRVFF-DWKD-YIK 239 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~-~~-~~~~~-~~d~~~~s~~K~~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~-~~~~-~~~ 239 (367)
+|++||+|++|+.+.. .. ..... .+++.++|+||+++++ .+|+++.+ +++++++.......... .+.. ...
T Consensus 156 --~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 232 (418)
T 2c81_A 156 --HNLFVIEDCAQSHGSVWNNQRAGTIGDIGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMH 232 (418)
T ss_dssp --TTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCT
T ss_pred --CCCEEEEECcccccCccCCEecccccceEEEeccCCcccCCC-CeEEEEECCHHHHHHHHHHHHhCcccccccccccc
Confidence 9999999999998763 11 11111 1444444559999753 56888884 77777665432211110 0000 000
Q ss_pred Hhh--cC--CccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccC-CC-ccCCCceEEEE
Q 017726 240 FYN--LG--TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQ-KE-EWFSDTVTAVI 312 (367)
Q Consensus 240 ~~~--~~--~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~-~~~~~~~~~~~ 312 (367)
.+. .+ ......... ..+.+++......+++++.++..++++++.+.|+++ |+.+..+ .. ....+.++.+.
T Consensus 233 ~~~~~~~~~~~~g~~~~~---~~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~ 309 (418)
T 2c81_A 233 GDMQLVKKGDIQGSNYCL---SEFQSAILLDQLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFR 309 (418)
T ss_dssp TCBSEEECCSSCCCBCCC---CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEE
T ss_pred chhhccccccccCcCCCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEE
Confidence 011 00 000000000 112334443333457788888899999999999887 8777643 22 12233456577
Q ss_pred cCC----CCCHHHHHHHHHhhCCeE---EccCC
Q 017726 313 VPS----HINSSEIVRRAWQRYNLS---LGLGL 338 (367)
Q Consensus 313 ~~~----~~~~~~l~~~L~~~~gv~---v~~g~ 338 (367)
+++ +.+..++.+.|.+++||. +.++.
T Consensus 310 ~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~ 342 (418)
T 2c81_A 310 FDPVKFGGLNADQFCEILREKLNMGTFYLHPPY 342 (418)
T ss_dssp ECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCC
T ss_pred EccccccccCHHHHHHHHHHcCCCCcccccccc
Confidence 753 568889999998666999 88765
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-26 Score=211.94 Aligned_cols=244 Identities=16% Similarity=0.092 Sum_probs=178.1
Q ss_pred cccCCCCCChHHHHHHHccCCCC--CCCC--cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeE
Q 017726 12 LFVPGPVHIPDQVIRAMNRNNED--YRSP--AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRI 87 (367)
Q Consensus 12 ~~~~~p~~~~~~v~~a~~~~~~~--~~~~--~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~v 87 (367)
.+.+.|+.+.+++.+++..+... ...+ ...+...++++.+++++|.+ + .++++||++|+..++.+++.+||+|
T Consensus 30 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~--~-~i~~~sG~~a~~~~l~~~~~~gd~v 106 (398)
T 2rfv_A 30 PIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGE--A-GLATASGISAITTTLLTLCQQGDHI 106 (398)
T ss_dssp CCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCS--E-EEEESSHHHHHHHHHHHHCCTTCEE
T ss_pred CCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCC--c-EEEECCHHHHHHHHHHHHhCCCCEE
Confidence 45566777777777776622111 1111 13467889999999999976 3 5666778899999999888999999
Q ss_pred EEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHh
Q 017726 88 ISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDE 165 (367)
Q Consensus 88 l~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~ 165 (367)
++..+.|++.. +...++..|.+++.++.+ |+++++++++ +++++|++++|+||||.+.|+++|.++|++
T Consensus 107 i~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~ 177 (398)
T 2rfv_A 107 VSASAIYGCTHAFLSHSMPKFGINVRFVDAA-----KPEEIRAAMR----PETKVVYIETPANPTLSLVDIETVAGIAHQ 177 (398)
T ss_dssp EEESSSCHHHHHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCC----TTEEEEEEESSBTTTTBCCCHHHHHHHHHH
T ss_pred EEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhcC----CCCeEEEEECCCCCCCcccCHHHHHHHHHH
Confidence 99999888764 223347789999999875 7999999987 467999999999999999999999999999
Q ss_pred cCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCc--ceeeeeCHHHHH-HhccCCCCceeechHHHHHHhh
Q 017726 166 YRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTG--MGIVCASPKALE-ASKTAKSVRVFFDWKDYIKFYN 242 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 242 (367)
+|+++|+|++|+.+...... ..++|+++.|+||+++++.+ .|++++++++++ .+.... ..++
T Consensus 178 --~~~~li~De~~~~~~~~~~~-~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~------------~~~~ 242 (398)
T 2rfv_A 178 --QGALLVVDNTFMSPYCQQPL-QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGL------------KDIT 242 (398)
T ss_dssp --TTCEEEEECTTTCTTTCCGG-GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHH------------HHTT
T ss_pred --cCCEEEEECCCcccccCCch-hhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHH------------HhCC
Confidence 99999999999876643322 34789999999999976654 499999998876 443210 0000
Q ss_pred cCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc
Q 017726 243 LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 243 ~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 292 (367)
+ ++.+.....+..++++. +....++..++.+.+.+.|++.
T Consensus 243 -~----~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~ 282 (398)
T 2rfv_A 243 -G----GCMSPFNAWLTLRGVKT-----LGIRMERHCENALKIARFLEGH 282 (398)
T ss_dssp -C----CCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTC
T ss_pred -C----CCCCHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHHHHcC
Confidence 1 13555444444445543 3344555667778888888764
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=216.82 Aligned_cols=324 Identities=13% Similarity=0.067 Sum_probs=222.9
Q ss_pred ccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeEEE
Q 017726 11 HLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIIS 89 (367)
Q Consensus 11 ~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl~ 89 (367)
+.+.+++.++++++.+++.+...... +.......++++.+++++|.+ .+++++|||+|+..++.++ +.+||+|++
T Consensus 5 ~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~~~~l~~~la~~~~~~---~~~~~~sGt~al~~al~~~~~~~gd~Vi~ 80 (367)
T 3nyt_A 5 IDLKNQQARIKDKIDAGIQRVLRHGQ-YILGPEVTELEDRLADFVGAK---YCISCANGTDALQIVQMALGVGPGDEVIT 80 (367)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHCC-CSSCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred ccccccccccCHHHHHHHHHHHhcCC-ccCChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHhCCCCcCEEEE
Confidence 34555666788888888887543322 223366889999999999976 3899999999999999988 899999999
Q ss_pred EeCCcchHHHHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCC
Q 017726 90 FLIGQFSLLWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRH 168 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~ 168 (367)
+.+.|++.. ..++..|++++.++.+++ +.+|+++++++++ +++++|+ ++||+|...|+++|.++|++ +
T Consensus 81 ~~~~~~~~~--~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~----~~~~~v~---~~~~~G~~~~~~~i~~la~~--~ 149 (367)
T 3nyt_A 81 PGFTYVATA--ETVALLGAKPVYVDIDPRTYNLDPQLLEAAIT----PRTKAII---PVSLYGQCADFDAINAIASK--Y 149 (367)
T ss_dssp ESSSCTHHH--HHHHHTTCEEEEECBCTTTCSBCGGGTGGGCC----TTEEEEC---CBCGGGCCCCHHHHHHHHHH--T
T ss_pred CCCccHHHH--HHHHHcCCEEEEEecCCccCCcCHHHHHHhcC----cCCcEEE---eeCCccChhhHHHHHHHHHH--c
Confidence 999888754 446778999999999865 7889999999986 4678887 77899999999999999999 9
Q ss_pred CcEEEEeeeeccCceeeccccccc--eEEEec--CCCcccCCCcceeeee-CHHHHHHhccCCCCceeechHHHHHHhhc
Q 017726 169 PALFLVDGVSSICAIDFRMDEWGI--DVALTG--SQKALSLPTGMGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNL 243 (367)
Q Consensus 169 ~~~vi~D~~~~~~~~~~~~~~~~~--d~~~~s--~~K~~~g~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (367)
|+++|+|++|+.+.. .+....+. |++++| ++|+++++...|+++. ++++.+++......+....+ .....
T Consensus 150 ~~~li~D~a~~~g~~-~~~~~~~~~~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~~g~~~~~----~~~~~ 224 (367)
T 3nyt_A 150 GIPVIEDAAQSFGAS-YKGKRSCNLSTVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIARHGQDRRY----HHIRV 224 (367)
T ss_dssp TCCBEEECTTTTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEETT----EECSC
T ss_pred CCEEEEECccccCCe-ECCeeccCCCCEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHhcCCCcCc----eeecc
Confidence 999999999987664 23222233 899998 5899965233577777 46777766543322111000 00001
Q ss_pred CCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCC-CccCCCceEEEEcCCCCCHHHH
Q 017726 244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK-EEWFSDTVTAVIVPSHINSSEI 322 (367)
Q Consensus 244 ~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l 322 (367)
|. .+..+....++....+ ..+++..++.+++++++.+.|++.++.+.... .......++.+..+ +.+++
T Consensus 225 g~--~~~~~~~~aa~~~~~l-----~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l 294 (367)
T 3nyt_A 225 GV--NSRLDTLQAAILLPKL-----EIFEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD---NRESV 294 (367)
T ss_dssp CC--BCCCCHHHHHHHHHHH-----HTHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS---SHHHH
T ss_pred Cc--CCCccHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC---CHHHH
Confidence 11 2233432222222222 23567778889999999999999875543321 11233344556553 67889
Q ss_pred HHHHHhhCCeEEccCCC-CC------C-------------CcEEEEeecCCCCHHHH--HHhhhh
Q 017726 323 VRRAWQRYNLSLGLGLN-KV------A-------------GKVFRIGHLGHLNEVMF--NFQLLF 365 (367)
Q Consensus 323 ~~~L~~~~gv~v~~g~~-~~------~-------------~~~iRi~~~~~~~~~~~--~~~~l~ 365 (367)
.+.|.++ ||.++.++. +. . ...+|+.++...+++|+ ..+.|.
T Consensus 295 ~~~L~~~-GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~ 358 (367)
T 3nyt_A 295 QASLKAA-GVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALT 358 (367)
T ss_dssp HHHHHHH-TCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHC-CCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHH
Confidence 9999766 999987654 11 0 23699998877776554 444444
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-27 Score=216.36 Aligned_cols=321 Identities=14% Similarity=0.025 Sum_probs=219.9
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeE
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRI 87 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~v 87 (367)
..+.+..|..+.++.+.+++.+..... .+.......++++.+++++|.+ .+++++||++|+..++.++ +.+||+|
T Consensus 31 ~~id~~~~~~~~~~~v~~a~~~~~~~~-~y~~~~~~~~l~~~la~~~~~~---~~v~~~~Gt~a~~~~l~~~~~~~gd~v 106 (399)
T 2oga_A 31 PFLDLKAAYEELRAETDAAIARVLDSG-RYLLGPELEGFEAEFAAYCETD---HAVGVNSGMDALQLALRGLGIGPGDEV 106 (399)
T ss_dssp CSCCHHHHHHHTHHHHHHHHHHHHHHT-CCSSSHHHHHHHHHHHHHTTSS---EEEEESCHHHHHHHHHHHTTCCTTCEE
T ss_pred cccccCcCCCCCCHHHHHHHHHHHhcC-CCCCchhHHHHHHHHHHHHCCC---eEEEecCHHHHHHHHHHHhCCCCcCEE
Confidence 345666777777788999988754322 1222366789999999999976 3678889999999999998 8999999
Q ss_pred EEEeCCcchHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhc
Q 017726 88 ISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY 166 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~ 166 (367)
+++.++|++.. ..++..|++++.++.++ ++.+|+++++++++ +++++|+ ++||||.+.|+++|.++|++
T Consensus 107 l~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~----~~~~~v~---~~n~tG~~~~l~~i~~l~~~- 176 (399)
T 2oga_A 107 IVPSHTYIASW--LAVSATGATPVPVEPHEDHPTLDPLLVEKAIT----PRTRALL---PVHLYGHPADMDALRELADR- 176 (399)
T ss_dssp EEESSSCTHHH--HHHHHTTCEEEEECBCSSSSSBCHHHHHHHCC----TTEEEEC---CBCGGGCCCCHHHHHHHHHH-
T ss_pred EECCCccHHHH--HHHHHCCCEEEEEecCCCCCCcCHHHHHHhcC----CCCeEEE---EeCCcCCccCHHHHHHHHHH-
Confidence 99999888743 45677899999999876 46789999999997 4668777 46899999999999999999
Q ss_pred CCCcEEEEeeeeccCceeecccccc--ceEEEecC--CCcccCCCcceeeeeC-HHHHHHhccCCCCceeechHHHHHHh
Q 017726 167 RHPALFLVDGVSSICAIDFRMDEWG--IDVALTGS--QKALSLPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFY 241 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~~~~~~~~~--~d~~~~s~--~K~~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (367)
+|+++|+|++|+.+... +....+ .|++++|+ +|+++++..+|+++.+ +++++++.......... .+
T Consensus 177 -~~~~li~Dea~~~g~~~-~~~~~~~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~~g~~~-------~~ 247 (399)
T 2oga_A 177 -HGLHIVEDAAQAHGARY-RGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQ-------KY 247 (399)
T ss_dssp -HTCEECEECTTCTTCEE-TTEETTCTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHBTTCSS-------TT
T ss_pred -cCCEEEEECcccccCcc-CCeecccccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHhcCccc-------cc
Confidence 99999999999877542 332223 68999998 6999642235888875 78877665422111100 01
Q ss_pred hcCC-ccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCCH
Q 017726 242 NLGT-FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINS 319 (367)
Q Consensus 242 ~~~~-~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (367)
.... -+.+..+....+++.++++. ++++.++..++++++.+.|+++ |+.+...... .....+.+.+ ...+.
T Consensus 248 ~~~~~g~~~~~~~~~~a~~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~~~~~~~~-~~~~~ 320 (399)
T 2oga_A 248 SHETKGTNSRLDEMQAAVLRIRLAH-----LDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPD-TDPVWHLFTV-RTERR 320 (399)
T ss_dssp CCCSCCCBCCCCHHHHHHHHHHHHT-----HHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTT-EECCCSSEEE-ECSSH
T ss_pred cccccccCCCcCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhccCCCccccCCCCC-CcceeEEEEE-ECCCH
Confidence 1000 01234555544444445544 3455667788899999999887 7766432111 1111111333 12367
Q ss_pred HHHHHHHHhhCCeEEccCCC-CC----------------C------CcEEEEeecCCCCHHHHH
Q 017726 320 SEIVRRAWQRYNLSLGLGLN-KV----------------A------GKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 320 ~~l~~~L~~~~gv~v~~g~~-~~----------------~------~~~iRi~~~~~~~~~~~~ 360 (367)
.++.+.|.+ +||.+++++. +. + ...+||++....+.+|+.
T Consensus 321 ~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~ 383 (399)
T 2oga_A 321 DELRSHLDA-RGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQAL 383 (399)
T ss_dssp HHHHHHHHH-TTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHH
T ss_pred HHHHHHHHH-CCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHH
Confidence 889999975 5999987652 10 0 257999987766655443
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-28 Score=219.03 Aligned_cols=303 Identities=12% Similarity=0.056 Sum_probs=204.6
Q ss_pred CcccccCCCCCC--hHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCe
Q 017726 9 KNHLFVPGPVHI--PDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR 86 (367)
Q Consensus 9 ~~~~~~~~p~~~--~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~ 86 (367)
+..+..+|+.++ ++++++++.+.... ..+.......++++++++++|.+. .++++||++|+..++.+++.+||+
T Consensus 14 ~~~~~~~~~~~~g~~p~v~~ai~~~~~~-~~~~~~~~~~~l~~~la~~~~~~~---~i~~~~g~~a~~~a~~~~~~~g~~ 89 (359)
T 3pj0_A 14 PYKLGGNGPRNVGVLTEALQNIDDNLES-DIYGNGAVIEDFETKIAKILGKQS---AVFFPSGTMAQQIALRIWADRKEN 89 (359)
T ss_dssp SEESSSSSCCBHHHHHHHTTTSCTTCBC-CBTTBSHHHHHHHHHHHHHHTCSE---EEEESCHHHHHHHHHHHHHHHHTC
T ss_pred chhhcCCCccccCCCHHHHHHHHhhccc-CcccCCHHHHHHHHHHHHHhCCCc---EEEeCCHHHHHHHHHHHHHhcCCC
Confidence 344555665555 88999999885432 223334678899999999999865 255588999999999888888887
Q ss_pred -EEE-EeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCc-cccccHHHH---
Q 017726 87 -IIS-FLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETAT-GVTNNLSKV--- 159 (367)
Q Consensus 87 -vl~-~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~t-G~~~~~~~i--- 159 (367)
+++ ..+.|++.. ....+...|.+++.++. .++.+|+++++++ . +++++|++++|+||+ |.++|.+++
T Consensus 90 ~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~d~~~l~~~-~----~~~~~v~~~~p~n~~~G~~~~~~~l~~l 163 (359)
T 3pj0_A 90 RRVAYHPLSHLEIHEQDGLKELQQITPLLLGT-ANQLLTIDDIKSL-R----EPVSSVLIELPQREIGGQLPAFEELEKI 163 (359)
T ss_dssp CEEEECTTCHHHHSSTTHHHHHHCCEEEECSC-TTSCCCHHHHHTC-S----SCCSEEEEESSBGGGTSBCCCHHHHHHH
T ss_pred cEEEEeccceeeehhcchHHHhcCceEEecCC-cCCCcCHHHHHhc-c----CCceEEEEEecccCCCcccCCHHHHHHH
Confidence 444 434333322 12233557999999987 4678999999987 3 578999999999998 688876555
Q ss_pred HHHHHhcCCCcEEEEeeeeccCcee------eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeec
Q 017726 160 RKLLDEYRHPALFLVDGVSSICAID------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFD 233 (367)
Q Consensus 160 ~~~~~~~~~~~~vi~D~~~~~~~~~------~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 233 (367)
.++|++ +|++||+|+++..+... .+.. .+.|+++.|+||+++++.| |+++.++++++++....
T Consensus 164 ~~~~~~--~~~~li~D~a~~~~~~~~~~~~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~------- 232 (359)
T 3pj0_A 164 SEYCHE--QGISLHLDGARLWEITPFYQKSAEEIC-ALFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWK------- 232 (359)
T ss_dssp HHHHHH--HTCEEEEEETTCGGGHHHHTCCHHHHH-TTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHH-------
T ss_pred HHHHHH--cCCEEEEECcchhcchhhhCCCHHHhh-ccCCEEEEeccccCCCcce-EEEECCHHHHHHHHHHH-------
Confidence 999999 99999999987654321 1111 3578999999999987766 89999999988775321
Q ss_pred hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccc-cCCCccCCCceEEE
Q 017726 234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNC-TQKEEWFSDTVTAV 311 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~ 311 (367)
....+. .+..+....+++ .+++. . + +..++..++++++.+.|+++ |+++. .+ ....++++
T Consensus 233 ------~~~~~~--~~~~~~~~~a~~-~~l~~---~-~-~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~~~~~~~~ 294 (359)
T 3pj0_A 233 ------RRYGGD--LISLYPYILSAD-YYFEK---R-I-GKMAEYFEAAKGLAERFNSCSGVKTVPEV----PVSNMFHV 294 (359)
T ss_dssp ------HHTTCC--CSCCHHHHHHHH-HHHHH---H-G-GGHHHHHHHHHHHHHHHHTSTTEEEESSS----CSSSEEEE
T ss_pred ------HHhCCC--cchhHHHHHHHH-HHHHH---H-H-HHhHHHHHHHHHHHHHHhhCCCceeeccC----CcceEEEE
Confidence 001111 122333222222 22322 1 2 33445688899999999998 88774 23 23346777
Q ss_pred EcCCC--CCHHHHHHHHHhhCCeEEccCCCCC-C-CcEEEEeec
Q 017726 312 IVPSH--INSSEIVRRAWQRYNLSLGLGLNKV-A-GKVFRIGHL 351 (367)
Q Consensus 312 ~~~~~--~~~~~l~~~L~~~~gv~v~~g~~~~-~-~~~iRi~~~ 351 (367)
+++.. .+..++.+.|.++ ||.+.+|..+. . ..++|+++.
T Consensus 295 ~~~~~~~~~~~~l~~~l~~~-GV~v~~g~~~~~~~~~~~r~~i~ 337 (359)
T 3pj0_A 295 YFENSADEIGAILTKIQDET-GVGISGYLQEKSADVCAFEVSVG 337 (359)
T ss_dssp EESSCHHHHHHHHHHHHHHH-CEECCSCCEEEETTEEEEEEECC
T ss_pred EecCccchhHHHHHHHHHhc-CcEecCCccccCCCceEEEEEec
Confidence 77432 2356788888655 99999985432 2 356999764
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-27 Score=216.47 Aligned_cols=298 Identities=11% Similarity=0.111 Sum_probs=204.1
Q ss_pred CChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeEEEEeCCcchH
Q 017726 19 HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSL 97 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl~~~~~~~~~ 97 (367)
.+++++++++.+.....+.+.......++++.+++++|. +++++++||++|+..++.++ +.+||+|+++.++|++.
T Consensus 9 ~~~~~v~~a~~~~~~~~~~~~~g~~~~~l~~~la~~~~~---~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~ 85 (394)
T 1o69_A 9 HMGGNELKYIEEVFKSNYIAPLGEFVNRFEQSVKDYSKS---ENALALNSATAALHLALRVAGVKQDDIVLASSFTFIAS 85 (394)
T ss_dssp ---CCHHHHHHHHHHHTTTSCTTHHHHHHHHHHHHHHCC---SEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGG
T ss_pred CCCHHHHHHHHHHHHcCCccCCChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHH
Confidence 344555666555432222222235678999999999997 35999999999999999998 89999999999998886
Q ss_pred HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeee
Q 017726 98 LWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGV 177 (367)
Q Consensus 98 ~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~ 177 (367)
. ..++..|++++.++.+.++.+|++++++++++.. .++++|++++ |+|...++++|.++|++ +|+++|+|++
T Consensus 86 ~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~-~~~~~v~~~~---~~G~~~~l~~i~~l~~~--~~~~li~Dea 157 (394)
T 1o69_A 86 V--APICYLKAKPVFIDCDETYNIDVDLLKLAIKECE-KKPKALILTH---LYGNAAKMDEIVEICKE--NDIVLIEDAA 157 (394)
T ss_dssp T--HHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCS-SCCCEEEEEC---GGGCCCCHHHHHHHHHH--TTCEEEEECT
T ss_pred H--HHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhccc-CCceEEEEEC---CCCChhhHHHHHHHHHH--cCCEEEEECc
Confidence 4 3456689999999998778899999999998532 2579999886 79999999999999999 9999999999
Q ss_pred eccCceeeccc--c-ccceEEEecCCCcccCCCcceeeeeC-HHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcH
Q 017726 178 SSICAIDFRMD--E-WGIDVALTGSQKALSLPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSI 253 (367)
Q Consensus 178 ~~~~~~~~~~~--~-~~~d~~~~s~~K~~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (367)
|+.+....+.. . .++|+.++|.+|.++ +.++|+++++ +++++++........... ...+..+.| +...+++.
T Consensus 158 ~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~~~~g-~~~~~~~~ 233 (394)
T 1o69_A 158 EALGSFYKNKALGTFGEFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARENC--LHYEHLDYG-YNYRLSNV 233 (394)
T ss_dssp TCTTCEETTEETTSSSSEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCCSS--SSCCCSSCC-CBCBCCHH
T ss_pred CcccceeCCcccccccCcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccccC--ccccccccC-cccCcCHH
Confidence 98655432211 1 257888999999886 5568999995 788777764321110000 000000011 11224555
Q ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCC-ceEEEEcCCC----------------
Q 017726 254 QLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSD-TVTAVIVPSH---------------- 316 (367)
Q Consensus 254 ~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~-~~~~~~~~~~---------------- 316 (367)
...+++.. ++. +++..++.+++++++.+.|+++ +++..+......+ +++++.++.+
T Consensus 234 ~aa~~l~~-l~~-----l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 306 (394)
T 1o69_A 234 LGAIGVAQ-MEV-----LEQRVLKKREIYEWYKEFLGEY-FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQK 306 (394)
T ss_dssp HHHHHHHH-HTT-----HHHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCC
T ss_pred HHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHHhccc-ccccCCCCCCcceeEEEEEEecchhhcccccccccccccc
Confidence 43333221 222 5667788899999999999887 5555432111122 2566777532
Q ss_pred -----CCHHHHHHHHHhhCCeEEccCCC
Q 017726 317 -----INSSEIVRRAWQRYNLSLGLGLN 339 (367)
Q Consensus 317 -----~~~~~l~~~L~~~~gv~v~~g~~ 339 (367)
.+..++.+.|.+ +||.++++..
T Consensus 307 ~~~~~~~~~~l~~~L~~-~gI~v~~~~~ 333 (394)
T 1o69_A 307 NITLHPKISKLIEDLKN-KQIETRPLWK 333 (394)
T ss_dssp CCCCCHHHHHHHHHHHH-TTCCCBCCCC
T ss_pred ccccccCHHHHHHHHHH-cCCcccccCC
Confidence 256789999965 5999998853
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-26 Score=211.35 Aligned_cols=294 Identities=13% Similarity=0.036 Sum_probs=190.7
Q ss_pred CChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH
Q 017726 19 HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL 98 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~ 98 (367)
+.++.+.+++.+......+.......+++++.+++++|.+ ++++++||++|+..++.+++.+||+|+++.+.|.+..
T Consensus 33 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~---~~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~ 109 (412)
T 2cb1_A 33 KTLEEGQERFATGEGYVYARQKDPTAKALEERLKALEGAL---EAVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTI 109 (412)
T ss_dssp SSHHHHHHHHHHCCSCSBTTTCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHH
T ss_pred CChHHHHHHhccccCcCcCCCCChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHH
Confidence 4455555555421111112122366889999999999975 4889999999999999998999999999999887753
Q ss_pred --HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEee
Q 017726 99 --WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDG 176 (367)
Q Consensus 99 --~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~ 176 (367)
+...++..|++++.++.+ +++++++++ +++++|++++++||+|.+.|+++|.++|++ +|+++++|+
T Consensus 110 ~~~~~~~~~~g~~~~~~~~~------~~~l~~~i~----~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~--~~~~li~D~ 177 (412)
T 2cb1_A 110 GLFGQVLSLMGVTVRYVDPE------PEAVREALS----AKTRAVFVETVANPALLVPDLEALATLAEE--AGVALVVDN 177 (412)
T ss_dssp HHHHHTTTTTTCEEEEECSS------HHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHH--HTCEEEEEC
T ss_pred HHHHHHHHHcCCEEEEECCC------HHHHHHHhc----cCCeEEEEeCCCCCCcccccHHHHHHHHHH--cCCEEEEEC
Confidence 322355679999988753 899999987 467999999999999999999999999999 999999999
Q ss_pred eeccCceeeccccccceEEEecCCCcccCCCc-ceeeeeCH-HHH-HHhccCCCCc-eee------chHHHHHHhhcCC-
Q 017726 177 VSSICAIDFRMDEWGIDVALTGSQKALSLPTG-MGIVCASP-KAL-EASKTAKSVR-VFF------DWKDYIKFYNLGT- 245 (367)
Q Consensus 177 ~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g-~g~~~~~~-~~~-~~~~~~~~~~-~~~------~~~~~~~~~~~~~- 245 (367)
+|+.+.........++|++++|+||+++++.+ +|+++..+ +.. .+......+. ... +..+...+++.++
T Consensus 178 ~~~~~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~ 257 (412)
T 2cb1_A 178 TFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGL 257 (412)
T ss_dssp GGGTTTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHT
T ss_pred CCccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHH
Confidence 99877322233345799999999999987655 56666544 320 0000000000 000 0001112221111
Q ss_pred ccCC-CCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccc-cCCCc------------cCCCceEE
Q 017726 246 FWPY-TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNC-TQKEE------------WFSDTVTA 310 (367)
Q Consensus 246 ~~~~-~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~------------~~~~~~~~ 310 (367)
...+ ..+....+.....+ ..++...++..++++++.+.|.+. ++..+ .|... ...+.++.
T Consensus 258 ~~~g~~~~~~~a~~~~~~l-----~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~ 332 (412)
T 2cb1_A 258 SLCGMALSPFNAYLLFQGL-----ETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILT 332 (412)
T ss_dssp TTTCCCCCHHHHHHHHHHG-----GGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEE
T ss_pred HhcCCCCChHHhHHHHcCC-----chHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEE
Confidence 0011 22322211111122 224556667788999999999987 77744 23211 12455788
Q ss_pred EEcCCCCCHHHHHHHHHhhCCeEEccC
Q 017726 311 VIVPSHINSSEIVRRAWQRYNLSLGLG 337 (367)
Q Consensus 311 ~~~~~~~~~~~l~~~L~~~~gv~v~~g 337 (367)
|.+ + +.+++.+.|. +.||.+ .+
T Consensus 333 ~~~--~-~~~~~~~~l~-~~~i~~-~~ 354 (412)
T 2cb1_A 333 LDL--G-DLERASRFLG-AIRLLK-AA 354 (412)
T ss_dssp EEC--S-SHHHHHHHHH-HCSSEE-CS
T ss_pred EEe--C-CHHHHHHHHH-hCCeee-ec
Confidence 888 3 6667777664 569998 65
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=211.54 Aligned_cols=288 Identities=16% Similarity=0.171 Sum_probs=200.2
Q ss_pred ChHHHHHHHccCCC----CCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHc---cC---CCC-CeEE
Q 017726 20 IPDQVIRAMNRNNE----DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN---TL---SPG-DRII 88 (367)
Q Consensus 20 ~~~~v~~a~~~~~~----~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~---~~---~~g-d~vl 88 (367)
.++.+.+++.+... ....+. .....++++.+++++|.+ +++++++||++|+..++.+ +. ++| |+|+
T Consensus 45 ~~~~v~~a~~~~~~~~~~~~~~y~-~~~~~~l~~~la~~~g~~--~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl 121 (375)
T 2eh6_A 45 AYPKLTEALKEQVEKLLHVSNLYE-NPWQEELAHKLVKHFWTE--GKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFI 121 (375)
T ss_dssp SCHHHHHHHHHHHHHCSCCCTTBC-CHHHHHHHHHHHHTSSSC--EEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred CCHHHHHHHHHHHHhccccCcccC-CHHHHHHHHHHHhhcCCC--CeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEE
Confidence 56777777766421 112221 245779999999999983 5699999999999998864 34 678 9999
Q ss_pred EEeCCcchHHHHHHHHHhCC-------c-----eEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc-
Q 017726 89 SFLIGQFSLLWIDQQQRLNF-------N-----VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN- 155 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~-------~-----~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~- 155 (367)
+.+++|++.... .....+. . +..++. .|+++++++++ +++++|++++++||||.+.|
T Consensus 122 ~~~~~y~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~----~~~~~v~~~~~~~~tG~~~~~ 191 (375)
T 2eh6_A 122 SFENSFHGRTYG-SLSATGQPKFHKGFEPLVPGFSYAKL-----NDIDSVYKLLD----EETAGIIIEVIQGEGGVNEAS 191 (375)
T ss_dssp EEBTCCCCSSHH-HHHHCBCGGGTTTTCSCCSSEEEECT-----TCHHHHHTTCC----TTEEEEEECSEETTTTSEECC
T ss_pred EECCCcCCCchh-hhhhcCCccccCCCCCCCCCceeCCC-----chHHHHHHHhc----CCeEEEEEeCccCCCCCcCCC
Confidence 999988775421 1222221 1 333332 48999998887 46799999999999999988
Q ss_pred ---HHHHHHHHHhcCCCcEEEEeeeec-cCcee--ecccccc--ceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCC
Q 017726 156 ---LSKVRKLLDEYRHPALFLVDGVSS-ICAID--FRMDEWG--IDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS 227 (367)
Q Consensus 156 ---~~~i~~~~~~~~~~~~vi~D~~~~-~~~~~--~~~~~~~--~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~ 227 (367)
+++|.++|++ +|+++|+|++|+ ++... ++....+ .|++++| |+++++.++|++++++++++++.....
T Consensus 192 ~~~l~~i~~~~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s~S--K~~~~g~~~G~~~~~~~~~~~~~~~~~ 267 (375)
T 2eh6_A 192 EDFLSKLQEICKE--KDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALA--KGLGGGVPIGAILAREEVAQSFTPGSH 267 (375)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSCCEEEEEEHHHHTTCCTTSC
T ss_pred HHHHHHHHHHHHH--hCCEEEEeccccCCCCCCcchhhhhcCCCCCEEEEc--ccccCCCCeEEEEEcHHHHhhhcCCCC
Confidence 9999999999 999999999998 43322 2233334 7888555 999877778999999988776654211
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCc
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDT 307 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 307 (367)
+. .+..+...+.+..++++.+. +..++.+++++++.+.|++++.....+ .+.
T Consensus 268 ----------------~~--~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~~~~~~~-----~g~ 319 (375)
T 2eh6_A 268 ----------------GS--TFGGNPLACRAGTVVVDEVE-----KLLPHVREVGNYFKEKLKELGKGKVKG-----RGL 319 (375)
T ss_dssp ----------------CC--SSTTCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTTSSEEEE-----ETT
T ss_pred ----------------CC--CCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCceE-----EEE
Confidence 11 12234444444445555543 567788899999999999875433322 345
Q ss_pred eEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 308 VTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 308 ~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
++++.++. +..++++.|.+ +||.+.++ .++++|+++....+++++
T Consensus 320 ~~~~~~~~--~~~~~~~~l~~-~gi~~~~~----~~~~iRi~~~~~~~~~~i 364 (375)
T 2eh6_A 320 MLGLELER--ECKDYVLKALE-KGLLINCT----AGKVLRFLPPLIIQKEHI 364 (375)
T ss_dssp EEEEECSS--CCHHHHHHHHH-TTEECEEE----TTTEEEECCCTTCCHHHH
T ss_pred EEEEEEcC--cHHHHHHHHHH-CCCEEecC----CCCEEEEECCCCCCHHHH
Confidence 67888753 46789999975 59999875 256899997655554443
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=219.57 Aligned_cols=312 Identities=15% Similarity=0.071 Sum_probs=209.7
Q ss_pred CCChHHHHHHHccCCC--CCCCCcHHHHHHHHHHHHHHHh-cCC-CCceEEe--cCChhHHHHHHHHccC--CCCCeEEE
Q 017726 18 VHIPDQVIRAMNRNNE--DYRSPAVPALTKTLLEDIKKIF-KTT-SGTPFLI--PTTGTGAWESALTNTL--SPGDRIIS 89 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~--~~~~~~~~~~~~~~~~~la~~~-~~~-~~~~v~~--~~ggt~al~~~~~~~~--~~gd~vl~ 89 (367)
.++++.+.+++.+... ....|.......++|+.+++++ +.. ++++|++ |+||++|+..++..+. .+||+|++
T Consensus 43 ~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~ 122 (394)
T 2ay1_A 43 TPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFV 122 (394)
T ss_dssp CCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred ccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEE
Confidence 3567888888876421 1112222234568999999987 541 2345888 9999999999887653 49999999
Q ss_pred EeCCcchHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHH
Q 017726 90 FLIGQFSLLWIDQQQRLNFNVDVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLD 164 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~ 164 (367)
..|+|++.. ..++..|.+++.++.+ .++.+|++++++++++.+ ++++++++++|+||||.++| +++|.++|+
T Consensus 123 ~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~ 199 (394)
T 2ay1_A 123 SDPTWPNHV--SIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAK-KGDMVLLHGCCHNPTGANLTLDQWAEIASILE 199 (394)
T ss_dssp EESCCHHHH--HHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCC-TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred cCCCChhHH--HHHHHcCCceEEEecccccCCccCHHHHHHHHHhCC-CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 999887753 4567789999999985 467789999999998642 34678888999999999986 557888899
Q ss_pred hcCCCcEEEEeeeeccCcee-------ec-ccccc-ceEEEecCCCcccCCCc--ceeeee---CHHHHHHhccCCCCce
Q 017726 165 EYRHPALFLVDGVSSICAID-------FR-MDEWG-IDVALTGSQKALSLPTG--MGIVCA---SPKALEASKTAKSVRV 230 (367)
Q Consensus 165 ~~~~~~~vi~D~~~~~~~~~-------~~-~~~~~-~d~~~~s~~K~~~g~~g--~g~~~~---~~~~~~~~~~~~~~~~ 230 (367)
+ +|+++|+|++|+.+... +. +...+ .++++.|+||+++ ++| +|++++ ++++++.+....
T Consensus 200 ~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~riG~~~~~~~~~~~~~~l~~~~---- 272 (394)
T 2ay1_A 200 K--TGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFG-IYRERTGCLLALCADAATRELAQGAM---- 272 (394)
T ss_dssp H--HTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTT-CGGGCEEEEEEECSSHHHHHHHHHHH----
T ss_pred H--CCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCc-CcCCccceEEEEeCCHHHHHHHHHHH----
Confidence 9 99999999999865431 11 21112 3578889999984 555 599988 676655443110
Q ss_pred eechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH-----HhChHHHHHHHHHHHHHHHHHHHHcC----CccccCCC
Q 017726 231 FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-----EEGLENVIERHRRLGKATRLAVEAWG----LKNCTQKE 301 (367)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~-----~~g~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~ 301 (367)
......+ ..+++...+.++.++++... +..+++++++++++++++.+.|++++ +.+..+
T Consensus 273 --------~~~~~~~--~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-- 340 (394)
T 2ay1_A 273 --------AFLNRQT--YSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAE-- 340 (394)
T ss_dssp --------HHHHHTT--TSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHH--
T ss_pred --------HHHHhhh--cCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcC--
Confidence 0000011 11234444455555554331 12377888999999999999999874 666554
Q ss_pred ccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHhhhhc
Q 017726 302 EWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQLLFQ 366 (367)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~l~~ 366 (367)
..+.++++.+ +.+.+.+.| +++||.+.+| +||++.. ..++.+...++|++
T Consensus 341 --~~g~~~~~~~----~~~~~~~~l-~~~gi~v~~~--------~Ris~~~~~~~~i~~~~~~l~~ 391 (394)
T 2ay1_A 341 --HRGMFSRLGA----TPEQVKRIK-EEFGIYMVGD--------SRINIAGLNDNTIPILARAIIE 391 (394)
T ss_dssp --CCSSEEECCC----CHHHHHHHH-HHHCEECCTT--------CEEEGGGCCTTTHHHHHHHHHH
T ss_pred --CceEEEeeCC----CHHHHHHHH-HhCCEEecCC--------CeEEeecCCHhhHHHHHHHHHH
Confidence 3444555544 344555555 4569999864 5998653 45555666666543
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-26 Score=214.41 Aligned_cols=319 Identities=14% Similarity=0.076 Sum_probs=209.6
Q ss_pred CCccccc---CCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCC
Q 017726 8 GKNHLFV---PGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPG 84 (367)
Q Consensus 8 ~~~~~~~---~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~g 84 (367)
++.|++. .++.++++++++++.... ..+.......++++.++++++.+ ++++++||++|+..++.+++.+|
T Consensus 41 ~~~ylD~~~~~~~~~~~~~~~~a~~~~~---~~y~~~~~~~~l~~~la~~~~~~---~~~~~~~gt~a~~~al~~l~~~g 114 (456)
T 2ez2_A 41 KDIYIDLLTDSGTNAMSDKQWAGMMMGD---EAYAGSENFYHLERTVQELFGFK---HIVPTHQGRGAENLLSQLAIKPG 114 (456)
T ss_dssp GGCSEECSCSSSCCCCCHHHHHHHTTCC---CCSSSCHHHHHHHHHHHHHHCCS---EEEEESSHHHHHHHHHHHHCCTT
T ss_pred ccceeeeccccCCccCCHHHHHHhhcch---hhcccChhHHHHHHHHHHHhCCC---cEEEeCCcHHHHHHHHHHhCCCC
Confidence 3444444 355577899999998432 12333466789999999999865 48999999999999999888999
Q ss_pred CeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC----------CCCCCHHHHHHHHhccCCCCccEEEEEecCC-Ccccc
Q 017726 85 DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW----------GEGAKLDVLASKLAADTAHTIKAICIVHNET-ATGVT 153 (367)
Q Consensus 85 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~----------~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n-~tG~~ 153 (367)
| +++.+.|++.. ...++..|.+++.++.+. ++.+|++++++++++++..++++|++++|+| |||.+
T Consensus 115 d--i~~~~~~~~~~-~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~ 191 (456)
T 2ez2_A 115 Q--YVAGNMYFTTT-RYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQP 191 (456)
T ss_dssp C--EEEESSCCHHH-HHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBC
T ss_pred C--Eeccccccchh-HHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCcc
Confidence 9 77778775543 245677899999998763 2578999999999864212348999999998 99998
Q ss_pred cc---HHHHHHHHHhcCCCcEEEEeeeeccC----------cee-ecc------ccccceEEEecCCCcccCCCcceeee
Q 017726 154 NN---LSKVRKLLDEYRHPALFLVDGVSSIC----------AID-FRM------DEWGIDVALTGSQKALSLPTGMGIVC 213 (367)
Q Consensus 154 ~~---~~~i~~~~~~~~~~~~vi~D~~~~~~----------~~~-~~~------~~~~~d~~~~s~~K~~~g~~g~g~~~ 213 (367)
.| +++|.++|++ +|+++|+|++|+.+ ... ... .....|++++|++|+++ ++..|+++
T Consensus 192 ~~~~~l~~i~~la~~--~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~-~~~gG~~~ 268 (456)
T 2ez2_A 192 VSMANMRAVRELTEA--HGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCL-VNIGGFLC 268 (456)
T ss_dssp CCHHHHHHHHHHHHH--TTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC-CSSCEEEE
T ss_pred CCHHHHHHHHHHHHH--cCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCC-CCceeEEE
Confidence 87 8999999999 99999999998863 111 110 01235888888888764 33358888
Q ss_pred e-CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc
Q 017726 214 A-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 214 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 292 (367)
. ++++++++..... ... +..+....+...+.++ ++......+ ++..++..++.+++.+.|++.
T Consensus 269 ~~~~~~~~~~~~~~~------------~~~-~~~~~~~~~~~~~~a~--a~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~ 332 (456)
T 2ez2_A 269 MNDDEMFSSAKELVV------------VYE-GMPSYGGLAGRDMEAM--AIGLREAMQ-YEYIEHRVKQVRYLGDKLKAA 332 (456)
T ss_dssp ESCHHHHHHHHHHHH------------HHT-CCTTTTTCCHHHHHHH--HHHHHHHTC-HHHHHHHHHHHHHHHHHHHHT
T ss_pred ECCHHHHHHHHHHHh------------hcc-CcccccCcchhHHHHH--HHHHHHHhH-HHHHHHHHHHHHHHHHHHhcC
Confidence 8 6787776643210 000 1000111222222221 333332211 456667778888999999888
Q ss_pred CCccccCCCccCCCceEEEEcC---CCCCHHHH-----HHHHHhhCCeEEcc-CCC--C---------C-CCcEEEEeec
Q 017726 293 GLKNCTQKEEWFSDTVTAVIVP---SHINSSEI-----VRRAWQRYNLSLGL-GLN--K---------V-AGKVFRIGHL 351 (367)
Q Consensus 293 g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l-----~~~L~~~~gv~v~~-g~~--~---------~-~~~~iRi~~~ 351 (367)
|+++..+ ..+.++++.++ .+.+..++ +++|.+++||.+.+ |.. + . ....+||++.
T Consensus 333 g~~~~~p----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~ 408 (456)
T 2ez2_A 333 GVPIVEP----VGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIP 408 (456)
T ss_dssp TCCBCSS----CCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECC
T ss_pred CCccccC----CCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeC
Confidence 8777655 23456677652 24455555 77775556998654 321 0 1 1367999976
Q ss_pred CC-CCHHH
Q 017726 352 GH-LNEVM 358 (367)
Q Consensus 352 ~~-~~~~~ 358 (367)
.. .++++
T Consensus 409 ~~~~t~e~ 416 (456)
T 2ez2_A 409 RRVYTYAH 416 (456)
T ss_dssp TTTCCHHH
T ss_pred CCCCCHHH
Confidence 43 44443
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=211.19 Aligned_cols=315 Identities=9% Similarity=0.085 Sum_probs=206.0
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHH-HHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeEEEEeCCcc
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDI-KKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQF 95 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~l-a~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl~~~~~~~ 95 (367)
+.++.+.+++.+.... ..++ ......++++.+ ++++|..+ .+++++|||+|+..++.++ +++||+|+++.+.|.
T Consensus 13 ~~~~~i~~a~~~~~~~~~~~~-~~~~~~~l~~~~~a~~~g~~~--~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~ 89 (377)
T 3ju7_A 13 VPVIEYLDELKEIDASHIYTN-YGPINQRFEQTIMSGFFQNRG--AVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFP 89 (377)
T ss_dssp CCGGGGHHHHHHHHHHTCCSS-SCHHHHHHHHHHHHHTSTTCS--EEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCT
T ss_pred CCcHHHHHHHHHHHHcCCccc-CCHHHHHHHHHHHHHHhCCCC--eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcH
Confidence 4445455555443222 1221 125678999999 99999322 4788999999999999887 899999999999888
Q ss_pred hHHHHHHHHHhCCceEEEeCC-CCCCCCHHHHHHHH-hccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEE
Q 017726 96 SLLWIDQQQRLNFNVDVVESD-WGEGAKLDVLASKL-AADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFL 173 (367)
Q Consensus 96 ~~~~~~~~~~~g~~~~~v~~~-~~~~~d~e~l~~~i-~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi 173 (367)
+.. ..++..|++++.++.+ .++.+|++++++++ +++ +++|+|+ ++||+|...|+++|.++|+ +|++||
T Consensus 90 ~~~--~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~--~~tk~v~---~~~~~G~~~~~~~i~~la~---~~~~vi 159 (377)
T 3ju7_A 90 ATP--LAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELK--EEVAIVV---PYATFGSWMNLEEYEELEK---KGVPVV 159 (377)
T ss_dssp HHH--HHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHG--GGEEEEC---CBCGGGBCCCCHHHHHHHH---TTCCBE
T ss_pred HHH--HHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCC--CCceEEE---EECCCCCccCHHHHHHHHh---cCCEEE
Confidence 754 4567889999999987 46789999999998 432 1278887 5678999999999999997 799999
Q ss_pred EeeeeccCceeeccccc-----cceEEEecCCCcccCCCcceeeee-CHHHHHHhccCCCCceeechHHHHHHhhcCCcc
Q 017726 174 VDGVSSICAIDFRMDEW-----GIDVALTGSQKALSLPTGMGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFW 247 (367)
Q Consensus 174 ~D~~~~~~~~~~~~~~~-----~~d~~~~s~~K~~~g~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (367)
+|++|+++... +.... ++++.+++++|+++++. .|+++. ++++.+++......+....+ ...+.|.
T Consensus 160 ~D~a~a~g~~~-~~~~~g~~~~d~~~~S~~~~K~l~~g~-gG~~~~~~~~l~~~~~~~~~~g~~~~~----~~~~~g~-- 231 (377)
T 3ju7_A 160 VDAAPGFGLMN-GGMHYGQDFSGMIIYSFHATKPFGIGE-GGLIYSKNEEDIQRIKRMGNFGFDTNR----ECTMMGF-- 231 (377)
T ss_dssp EECTTCTTCEE-TTEETTTTCSSEEEEECBTTSSSCCBS-CEEEEESCHHHHHHHHHHTBTTBCTTS----CBCSSCC--
T ss_pred EECCCccCCeE-CCEeccCCCCcEEEEECCCCCcCCCCC-cEEEEECCHHHHHHHHHHHhcCCCCCC----ceeeccc--
Confidence 99999987642 22112 24445555789997644 366655 56666666544322111000 0001111
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcC-C--ccccCCCccCCCceEEEEcCCCCCHHHHHH
Q 017726 248 PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG-L--KNCTQKEEWFSDTVTAVIVPSHINSSEIVR 324 (367)
Q Consensus 248 ~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 324 (367)
.+..+. +.+++.......++...++.+++++++.+.|++.+ + .+...........++.+.+++..+.+++.+
T Consensus 232 ~~~~~~-----~~aa~~~~~l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 306 (377)
T 3ju7_A 232 NCKMSE-----YAAAIGIATMKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEEVRNKQVIE 306 (377)
T ss_dssp BCCCCH-----HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTTSCHHHHHH
T ss_pred cCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCChhhHHHHHH
Confidence 111222 23343333334477888899999999999999983 3 222221111122234566655455889999
Q ss_pred HHHhhCCeEEccCCCC-C------C--------------CcEEEEeecCCCCHHHHH
Q 017726 325 RAWQRYNLSLGLGLNK-V------A--------------GKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 325 ~L~~~~gv~v~~g~~~-~------~--------------~~~iRi~~~~~~~~~~~~ 360 (367)
.|.++ ||.++.++.+ . . ...+|+.++...+++|+.
T Consensus 307 ~L~~~-gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~ 362 (377)
T 3ju7_A 307 DLKKQ-KIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVE 362 (377)
T ss_dssp HHHTT-TBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHH
T ss_pred HHHHC-CCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHH
Confidence 99755 9999877621 0 0 135999888777765543
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-26 Score=209.74 Aligned_cols=283 Identities=14% Similarity=0.109 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.....++++.+++++|.+ .+++++||++|+..++.+++.+||+|+++.+.|++.. +...++..|++++.++.+
T Consensus 80 ~p~~~~l~~~la~~~g~~---~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-- 154 (414)
T 3ndn_A 80 NPTVSVFEERLRLIEGAP---AAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD-- 154 (414)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT--
T ss_pred ChHHHHHHHHHHHHHCCC---cEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC--
Confidence 367889999999999963 3788899999999999999999999999999888764 333456689999999875
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ +++++|++++|+||+|.+.|+++|.++|++ +|+++|+|++++.+....+. ..++|+++.|
T Consensus 155 ---d~~~l~~ai~----~~t~~v~le~p~NptG~~~~l~~i~~la~~--~g~~livDe~~~~~~~~~~~-~~g~div~~S 224 (414)
T 3ndn_A 155 ---DLSQWERALS----VPTQAVFFETPSNPMQSLVDIAAVTELAHA--AGAKVVLDNVFATPLLQQGF-PLGVDVVVYS 224 (414)
T ss_dssp ---CHHHHHHHTS----SCCSEEEEESSCTTTCCCCCHHHHHHHHHH--TTCEEEEECTTTHHHHCCCG-GGTCSEEEEE
T ss_pred ---CHHHHHHhcC----CCCeEEEEECCCCCCCccccHHHHHHHHHH--cCCEEEEECCCcccccCCch-hcCCCeEecc
Confidence 8999999997 467999999999999999999999999999 99999999999855432222 4578999999
Q ss_pred CCCcccCCCc--ceeeeeCHHHHH-HhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHH
Q 017726 199 SQKALSLPTG--MGIVCASPKALE-ASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~ 275 (367)
++|+++++.. +|+++++++.+. .+... .. ..|. +.+... ...++.. ...+..+.
T Consensus 225 ~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~-------------~~-~~g~----~~~~~~---a~~~~~~--l~~l~~r~ 281 (414)
T 3ndn_A 225 GTKHIDGQGRVLGGAILGDREYIDGPVQKL-------------MR-HTGP----AMSAFN---AWVLLKG--LETLAIRV 281 (414)
T ss_dssp TTTTTTCSSCCCCEEEEECHHHHTTHHHHH-------------HH-HHCC----CCCHHH---HHHHHHH--GGGHHHHH
T ss_pred CCccccCCCCceEEEEEECHHHHHHHHHHH-------------HH-HcCC----CCCHHH---HHHHHHH--HHHHHHHH
Confidence 9999964332 699999988765 33311 00 0121 233322 1112221 12256667
Q ss_pred HHHHHHHHHHHHHHHHc-CCccc-cCCC-c-----------cCCCceEEEEcCCC-----CCHHHHHHHHHhhCCeEEcc
Q 017726 276 ERHRRLGKATRLAVEAW-GLKNC-TQKE-E-----------WFSDTVTAVIVPSH-----INSSEIVRRAWQRYNLSLGL 336 (367)
Q Consensus 276 ~~~~~~~~~l~~~L~~~-g~~~~-~~~~-~-----------~~~~~~~~~~~~~~-----~~~~~l~~~L~~~~gv~v~~ 336 (367)
++..++++.+.+.|++. ++..+ .|.- . ...+.+++|.++.+ .+...+++.|. ..++.+..
T Consensus 282 ~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~-~~~~~~s~ 360 (414)
T 3ndn_A 282 QHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMR-LIDISNNL 360 (414)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCS-SSEECSCC
T ss_pred HHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCc-cceEcCCC
Confidence 78889999999999886 44322 2210 0 01356888988432 12455666663 44666654
Q ss_pred CCC-----------------------CCCCcEEEEeecCCCCHHHHHHhh
Q 017726 337 GLN-----------------------KVAGKVFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 337 g~~-----------------------~~~~~~iRi~~~~~~~~~~~~~~~ 363 (367)
|.. ...++.+|+| .+..+.+|+...+
T Consensus 361 G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRls-vG~e~~~dli~dl 409 (414)
T 3ndn_A 361 GDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRIS-VGLEDTDDLIADI 409 (414)
T ss_dssp SCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEE-CCSSCHHHHHHHH
T ss_pred CCCCceeeCccccccccCCHHHHHhcCCCCCeEEEE-eCcCCHHHHHHHH
Confidence 421 1234679999 4777766666554
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-27 Score=214.19 Aligned_cols=283 Identities=13% Similarity=0.093 Sum_probs=201.3
Q ss_pred HHHHHHHccCCCC------CCCCcH-HHHHHHHHHHHHHHhcCCCCceEEe--cCChhHHHHHHHHccCCCCCeEEEEe-
Q 017726 22 DQVIRAMNRNNED------YRSPAV-PALTKTLLEDIKKIFKTTSGTPFLI--PTTGTGAWESALTNTLSPGDRIISFL- 91 (367)
Q Consensus 22 ~~v~~a~~~~~~~------~~~~~~-~~~~~~~~~~la~~~~~~~~~~v~~--~~ggt~al~~~~~~~~~~gd~vl~~~- 91 (367)
.+|++++.+.... ..++.+ ....+++++.+++++|.+. .+++ ++||++|+..++.+++.+||+|++..
T Consensus 32 ~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g~e~--alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~ 109 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKTEA--ALVRPQIISGTHAISTVLFGILRPDDELLYITG 109 (409)
T ss_dssp HHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHTCSE--EEEETTSCSHHHHHHHHHHHHCCTTCEEEECSS
T ss_pred HHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhCCCc--EEEECCCccHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 4577887774321 111211 1347889999999999865 3443 78999999999999999999999998
Q ss_pred CCcchHH-HH-------HHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEe----cCCCccccccHHHH
Q 017726 92 IGQFSLL-WI-------DQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVH----NETATGVTNNLSKV 159 (367)
Q Consensus 92 ~~~~~~~-~~-------~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~----~~n~tG~~~~~~~i 159 (367)
+.|.+.. .. ..++..|++++.++.++++.+|+++++++++ +++|+|++++ |+||+|.+.|+++|
T Consensus 110 ~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~----~~tklV~i~~s~g~p~nptg~v~~l~~I 185 (409)
T 3jzl_A 110 QPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMT----PKTKMIGIQRSRGYADRPSFTIEKIKEM 185 (409)
T ss_dssp SCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCC----TTEEEEEEECSCTTSSSCCCCHHHHHHH
T ss_pred CCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhcc----CCCeEEEEECCCCCCCCCcCccccHHHH
Confidence 7666543 21 2346679999999998888899999999997 4779999999 99999999999999
Q ss_pred HHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCC--cceeeeeCHHHHHHhccCCCCceeechHHH
Q 017726 160 RKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPT--GMGIVCASPKALEASKTAKSVRVFFDWKDY 237 (367)
Q Consensus 160 ~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~--g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (367)
.++|++.++|+++++|++|+.+.........++|++++|+||+++|+. ..|++++++++++++..........
T Consensus 186 ~~la~~~~~~~~livD~a~~~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g----- 260 (409)
T 3jzl_A 186 IVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIG----- 260 (409)
T ss_dssp HHHHHHHCTTCEEEEECTTCTTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTG-----
T ss_pred HHHHHhhCCCCEEEEeCCcccccccCCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhcccccc-----
Confidence 999998667999999999987653334445679999999999997642 2499999999998886521110000
Q ss_pred HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCC
Q 017726 238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI 317 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 317 (367)
...+ +......++...+.. +..++++..+++.++.+.|+++|+++.+.....+...++.|.+++..
T Consensus 261 ---~~~g------~~~~~~~~~l~gl~~-----~~~r~~~~~~~a~~la~~L~~~g~~v~p~~~~~~~~~i~~i~l~~~~ 326 (409)
T 3jzl_A 261 ---REAG------ASLYSLLEMYQGFFL-----APHVTAQAIKGARFTAAMLAEFGVEADPVWDAPRTDLIQSVSFHNKE 326 (409)
T ss_dssp ---GGCC------CCTTCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCCEEECSCHH
T ss_pred ---cccc------ccHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCccEEEEEEeCCHH
Confidence 0011 111101222222322 35667788999999999999999887543222233347778885333
Q ss_pred CHHHHHHHHHhh
Q 017726 318 NSSEIVRRAWQR 329 (367)
Q Consensus 318 ~~~~l~~~L~~~ 329 (367)
...++++.|+..
T Consensus 327 ~~~~~~~~L~~~ 338 (409)
T 3jzl_A 327 KMVAFAQAIQAA 338 (409)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 455788888644
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-27 Score=215.74 Aligned_cols=310 Identities=11% Similarity=0.000 Sum_probs=207.9
Q ss_pred CChHHHHHHHccCCC--CCCCCcHHHHHHHHHHHHHHHhcCC-----CCceEEe--cCChhHHHHHHHHcc--CCCCCeE
Q 017726 19 HIPDQVIRAMNRNNE--DYRSPAVPALTKTLLEDIKKIFKTT-----SGTPFLI--PTTGTGAWESALTNT--LSPGDRI 87 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~--~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~v~~--~~ggt~al~~~~~~~--~~~gd~v 87 (367)
++++.+.+++.+... ....|.......++|+.++++++.. ++++|++ ++||++|+..++..+ +.+||+|
T Consensus 44 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~V 123 (396)
T 2q7w_A 44 PVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRV 123 (396)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEE
T ss_pred cCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEE
Confidence 566888888876421 1122322344678999999998321 1345887 999999999988654 4699999
Q ss_pred EEEeCCcchHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHH
Q 017726 88 ISFLIGQFSLLWIDQQQRLNFNVDVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKL 162 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~ 162 (367)
++..|.|+++. ..++..|.+++.++.+ .++.+|++++++++++.+ ++++++++++|+||||.+++ +++|.++
T Consensus 124 l~~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~v~~~~p~nptG~~~~~~~l~~l~~~ 200 (396)
T 2q7w_A 124 WVSNPSWPNHK--SVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQ-AGDVVLFHGCCHNPTGIDPTLEQWQTLAQL 200 (396)
T ss_dssp EEEESCCTHHH--HHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCC-TTCEEEEECSSCTTTCCCCCHHHHHHHHHH
T ss_pred EEcCCCchhHH--HHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCC-CCCEEEEeCCCCCCCCCCCCHHHHHHHHHH
Confidence 99999888753 5567789999999985 467789999999998642 35688899999999999986 5578889
Q ss_pred HHhcCCCcEEEEeeeeccCcee-------ec-ccc-ccceEEEecCCCcccCCCc--ceeeee---CHHHHHHhccCCCC
Q 017726 163 LDEYRHPALFLVDGVSSICAID-------FR-MDE-WGIDVALTGSQKALSLPTG--MGIVCA---SPKALEASKTAKSV 228 (367)
Q Consensus 163 ~~~~~~~~~vi~D~~~~~~~~~-------~~-~~~-~~~d~~~~s~~K~~~g~~g--~g~~~~---~~~~~~~~~~~~~~ 228 (367)
|++ +|+++|+|++|+.+... +. ... ...++++.|+||.++ ++| +|++++ +++.++.+....
T Consensus 201 ~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~riG~~~~~~~~~~~~~~~~~~~-- 275 (396)
T 2q7w_A 201 SVE--KGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFG-LYNERVGACTLVAADSETVDRAFSQM-- 275 (396)
T ss_dssp HHH--HTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTT-CGGGCCEEEEEECSSHHHHHHHHHHH--
T ss_pred HHH--CCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEecccccc-ccccccceEEEEcCCHHHHHHHHHHH--
Confidence 999 99999999998764321 11 111 135688999999984 556 699987 564433332100
Q ss_pred ceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH-----HhChHHHHHHHHHHHHHHHHHHHHcC----CccccC
Q 017726 229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-----EEGLENVIERHRRLGKATRLAVEAWG----LKNCTQ 299 (367)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~-----~~g~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~ 299 (367)
....... ..+++.....++.++++... +..+++++++++++++++.+.|++.+ +.+..+
T Consensus 276 ----------~~~~~~~--~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 343 (396)
T 2q7w_A 276 ----------KAAIRAN--YSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIK 343 (396)
T ss_dssp ----------HHHHHTT--TSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHH
T ss_pred ----------HHHHhhc--cCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecC
Confidence 0000011 12345555555555554320 12367778889999999999999986 666554
Q ss_pred CCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHhhhh
Q 017726 300 KEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQLLF 365 (367)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 365 (367)
.++.++++.+ +.+.+.+.| +++||.+.+| +||++.. ..++.+...+.|+
T Consensus 344 ----~~~~~~~~~~----~~~~~~~~l-~~~gv~v~~~--------~Ris~~~~~~e~i~~~~~~l~ 393 (396)
T 2q7w_A 344 ----QNGMFSFSGL----TKEQVLRLR-EEFGVYAVAS--------GRVNVAGMTPDNMAPLCEAIV 393 (396)
T ss_dssp ----CCSSEEECCC----CHHHHHHHH-HHHCEECCTT--------CEEEGGGCCTTTHHHHHHHHH
T ss_pred ----CCceEEEecC----CHHHHHHHH-HhcCeeecCC--------ceEEEeecCHHHHHHHHHHHH
Confidence 3454544443 344444444 5569999864 6999764 4555565555554
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-30 Score=237.41 Aligned_cols=315 Identities=10% Similarity=-0.014 Sum_probs=217.9
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeC
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI 92 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~ 92 (367)
+.++.+.+++.+.... ..+|. ....++++.+++++ |.+ +++++++++|+++++..++.+++.+||+|++..|
T Consensus 44 ~~~~~v~~a~~~~~~~~~~~y~--~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p 121 (392)
T 3b1d_A 44 EVMPEVKQAIHDYAEQLVYGYT--YASDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSP 121 (392)
Confidence 4567788888776532 12222 11567777777765 421 2346999999999999999998999999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCCC---CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhc
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDWG---EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEY 166 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~~---~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~ 166 (367)
.|++.. ..++..|.+++.++.+.. +.+|++++++++++ +++++|++++|+||||.++| +++|.++|++
T Consensus 122 ~~~~~~--~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~- 195 (392)
T 3b1d_A 122 VYPPFA--RSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVE---NDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQK- 195 (392)
Confidence 887754 446677888888887522 35899999999873 35789999999999999986 7889999999
Q ss_pred CCCcEEEEeeeeccCcee----ecc---cc--ccceEEEecCCCccc-CCCcceeeeeCHH-HHHHhccCCCCceeechH
Q 017726 167 RHPALFLVDGVSSICAID----FRM---DE--WGIDVALTGSQKALS-LPTGMGIVCASPK-ALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~~----~~~---~~--~~~d~~~~s~~K~~~-g~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~ 235 (367)
+|+++|+|++|+.+... .+. .. .+.++++.|++|+++ +..++|+++++++ +++.+......
T Consensus 196 -~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~------- 267 (392)
T 3b1d_A 196 -HHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLV------- 267 (392)
Confidence 99999999999764321 111 11 346689999999995 2334699988654 77666532110
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-c-CCccccCCCccCCCceEEEEc
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQKEEWFSDTVTAVIV 313 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~ 313 (367)
+...+++.....+..+++... +..++++++++.++++.+.+.|++ + ++.+..+ .++.++++++
T Consensus 268 ----------~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~~~~~~i~~ 332 (392)
T 3b1d_A 268 ----------NNHHEVSSLGYIATETAYRYG-KPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKP----QGTYLIWLDF 332 (392)
Confidence 001123443334444455432 223777888899999999999988 5 7777665 4555556777
Q ss_pred CC-CCCHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecCCCCHHHHHHhhh
Q 017726 314 PS-HINSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 314 ~~-~~~~~~l~~~L~~~~gv~v~~g~~~~--~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
+. +.+..++++.|.+++||.+.+|..+. .++++||++....++.+...+.|
T Consensus 333 ~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~e~i~~~l~~l 386 (392)
T 3b1d_A 333 SDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAAPKSLVEEICKRI 386 (392)
Confidence 54 35677899999756699999875432 34679999766544444433333
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=227.18 Aligned_cols=322 Identities=11% Similarity=0.046 Sum_probs=205.8
Q ss_pred hHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHh----c--CC--CCceEEecCChhHHHHHHHHc-----cCCCCCeE
Q 017726 21 PDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIF----K--TT--SGTPFLIPTTGTGAWESALTN-----TLSPGDRI 87 (367)
Q Consensus 21 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~--~~~~v~~~~ggt~al~~~~~~-----~~~~gd~v 87 (367)
++.+++++.+......++.......++|+.+++++ + .+ +++++++|+|+++++..++.+ ++.+||.|
T Consensus 117 ~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~~~gd~V 196 (533)
T 3f6t_A 117 RDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKI 196 (533)
T ss_dssp HHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEE
T ss_pred CcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhccCCcCEE
Confidence 55566555543322111111123345666666665 2 22 235799999999999999987 78999999
Q ss_pred EEEeCCcchHHHHHHHHHhCCceEEEeCC----CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHH---HHH
Q 017726 88 ISFLIGQFSLLWIDQQQRLNFNVDVVESD----WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLS---KVR 160 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~----~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~---~i~ 160 (367)
+++.|.|.+.. ..++..|.+++.++.+ .++.+|+++++++++ +++++|++++|+||||.++|.+ +|.
T Consensus 197 iv~~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~----~~~k~v~l~~p~NPtG~~~~~~~l~~l~ 270 (533)
T 3f6t_A 197 AINEPIFTPYL--RIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKD----PSIKALIVVNPTNPTSKEFDTNALNAIK 270 (533)
T ss_dssp EEESSCCHHHH--TSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSC----TTEEEEEEESSCTTTCBCCCHHHHHHHH
T ss_pred EEcCCCcHHHH--HHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhC----CCCeEEEEeCCCCCCccccCHHHHHHHH
Confidence 99999887753 4456678899999875 356789999999987 5789999999999999999866 677
Q ss_pred HHHH-hcCCCcEEEEeeeeccCcee---eccccccceEEEecCCCcccCCCc--ceeeeeCHH-----HHHHhccCC---
Q 017726 161 KLLD-EYRHPALFLVDGVSSICAID---FRMDEWGIDVALTGSQKALSLPTG--MGIVCASPK-----ALEASKTAK--- 226 (367)
Q Consensus 161 ~~~~-~~~~~~~vi~D~~~~~~~~~---~~~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~-----~~~~~~~~~--- 226 (367)
++|+ + +|+++|+|++|+..... +.....+.++++.|+||.++ ++| +|+++++++ +++.+.+..
T Consensus 271 ~la~~~--~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~ 347 (533)
T 3f6t_A 271 QAVEKN--PKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFG-CTGWRLGVIALNEKNVFDDNIAHLDKVELRQ 347 (533)
T ss_dssp HHHHHC--TTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHT-CGGGCEEEEEEESSCHHHHHHHTSCHHHHHH
T ss_pred HHHHhC--CCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCC-CcccceEEEEECcHHHHHHHHHhcchhhHHH
Confidence 7777 6 89999999998743321 11111246799999999984 666 799998776 444332100
Q ss_pred ---------CCceeechHH-HHHHhh-cCCccCCCCcHHHHHHHH-HHHHHHH-----H---hChHHHHHHHHHHHHHHH
Q 017726 227 ---------SVRVFFDWKD-YIKFYN-LGTFWPYTPSIQLLYGLR-AALDLIF-----E---EGLENVIERHRRLGKATR 286 (367)
Q Consensus 227 ---------~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~al~-~al~~~~-----~---~g~~~~~~~~~~~~~~l~ 286 (367)
.....+..-+ ....+. ...+...+++.....++. .++..+. + ..+++++++++++++.+.
T Consensus 348 ~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~ 427 (533)
T 3f6t_A 348 LHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLH 427 (533)
T ss_dssp HHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 0000000000 000001 111112233433333321 1344442 1 126778888999999999
Q ss_pred HHHHHcCCccccCCCccCCCceEEEEcCC----------------CCCHHHHHHHHHhhCCeEEccCCCCCC-CcEEEEe
Q 017726 287 LAVEAWGLKNCTQKEEWFSDTVTAVIVPS----------------HINSSEIVRRAWQRYNLSLGLGLNKVA-GKVFRIG 349 (367)
Q Consensus 287 ~~L~~~g~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~~~L~~~~gv~v~~g~~~~~-~~~iRi~ 349 (367)
+.|. .++.+..+ .++.++++.++. +.+..+++.++.+++||.+.+|..+.. .+++|++
T Consensus 428 ~~L~-~~~~~~~~----~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls 502 (533)
T 3f6t_A 428 DAMQ-APKDETDT----NTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVS 502 (533)
T ss_dssp HHHT-CCCCCSTT----BCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSSTTEEEEE
T ss_pred HhcC-CCccccCC----CceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCCCCEEEEE
Confidence 9997 66665554 456667777632 135668888888788999999855433 5689999
Q ss_pred ecCCCCHH
Q 017726 350 HLGHLNEV 357 (367)
Q Consensus 350 ~~~~~~~~ 357 (367)
+.. .+++
T Consensus 503 ~a~-~~~e 509 (533)
T 3f6t_A 503 QAN-LPTE 509 (533)
T ss_dssp SSS-SCHH
T ss_pred Eee-CCHH
Confidence 743 3443
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-26 Score=208.13 Aligned_cols=284 Identities=15% Similarity=0.052 Sum_probs=186.7
Q ss_pred cccCCCCCChHHHHHHHccCCCC--CCCC--cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeE
Q 017726 12 LFVPGPVHIPDQVIRAMNRNNED--YRSP--AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRI 87 (367)
Q Consensus 12 ~~~~~p~~~~~~v~~a~~~~~~~--~~~~--~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~v 87 (367)
.+.+.++.+.+.+.+++...... ...+ .......++++.+++++|.+ + .++++||++|+..++.+++.+||+|
T Consensus 31 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~~--~-~i~~~sG~~a~~~~l~~~~~~gd~v 107 (398)
T 1gc0_A 31 PVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGE--A-GLALASGMGAITSTLWTLLRPGDEV 107 (398)
T ss_dssp CBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCS--E-EEEESSHHHHHHHHHHHHCCTTCEE
T ss_pred CccCCCccccCCHHHHHHhhcCCcCCCcccCCCChHHHHHHHHHHHHhCCC--c-EEEECCHHHHHHHHHHHHhcCCCEE
Confidence 34555566666666665421111 1111 12367889999999999976 3 5666777999999999888999999
Q ss_pred EEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHh
Q 017726 88 ISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDE 165 (367)
Q Consensus 88 l~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~ 165 (367)
+++.+.|++.. +...++..|+++..++.. |+++++++++ +++++|++++|+||||.+.|+++|.++|++
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~ 178 (398)
T 1gc0_A 108 LLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA-----DLQALEAAMT----PATRVIYFESPANPNMHMADIAGVAKIARK 178 (398)
T ss_dssp EEESSCCSHHHHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHGG
T ss_pred EEeCCCchhHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcC----CCCeEEEEECCCCCCcccccHHHHHHHHHH
Confidence 99999988864 222346679999988764 7999999997 467999999999999999999999999999
Q ss_pred cCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCc--ceeeeeCHHHHH-HhccCCCCceeechHHHHHHhh
Q 017726 166 YRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTG--MGIVCASPKALE-ASKTAKSVRVFFDWKDYIKFYN 242 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 242 (367)
+|+++++|++|+.+....+. ..++|+++.|+||+++++.+ .|+++++++.++ .+.... ..+.
T Consensus 179 --~~~~li~D~~~~~~~~~~~~-~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~------------~~~~ 243 (398)
T 1gc0_A 179 --HGATVVVDNTYCTPYLQRPL-ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGL------------KDMT 243 (398)
T ss_dssp --GTCEEEEECTTTHHHHCCGG-GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHH------------HHHT
T ss_pred --cCCEEEEECCCcccccCCch-hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHh------------hccC
Confidence 99999999999876543333 35789999999999986654 499999988765 343210 0001
Q ss_pred cCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCc--------------cccCCCccCCCc
Q 017726 243 LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLK--------------NCTQKEEWFSDT 307 (367)
Q Consensus 243 ~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~--------------~~~~~~~~~~~~ 307 (367)
.++.+....++...+++. +....++..++++.+.+.|++. ++. +..+... ..+.
T Consensus 244 -----~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~-~~~~ 312 (398)
T 1gc0_A 244 -----GAVLSPHDAALLMRGIKT-----LNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMS-QPGG 312 (398)
T ss_dssp -----CCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC-----------------CCTT
T ss_pred -----CCCCCHHHHHHHHhccch-----HHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCC-CCce
Confidence 123555443444334433 4555667778888888888775 221 1111101 2355
Q ss_pred eEEEEcCCCCCHHHHHHHHHhhCCeEEcc
Q 017726 308 VTAVIVPSHINSSEIVRRAWQRYNLSLGL 336 (367)
Q Consensus 308 ~~~~~~~~~~~~~~l~~~L~~~~gv~v~~ 336 (367)
++.|.++ + +.++..+ +.++.++.++.
T Consensus 313 ~~~~~l~-~-~~~~~~~-~l~~~~i~~~~ 338 (398)
T 1gc0_A 313 MIAFELK-G-GIGAGRR-FMNALQLFSRA 338 (398)
T ss_dssp EEEEEET-T-HHHHHHH-HHHHCSSSEEC
T ss_pred EEEEEEC-C-CHHHHHH-HHHhCCCceec
Confidence 7788874 2 1233444 44566777654
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-25 Score=206.61 Aligned_cols=323 Identities=13% Similarity=0.074 Sum_probs=220.8
Q ss_pred ccCCCCCChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-------CCCC
Q 017726 13 FVPGPVHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-------LSPG 84 (367)
Q Consensus 13 ~~~~p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-------~~~g 84 (367)
+..++..+++++++++.+.... ...+ .....++++.+++++|.+ .+++++|||+|+..++.++ +.+|
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~---~~i~~~sGt~a~~~al~~~~~~~~~~~~~g 80 (390)
T 3b8x_A 6 YPLASSTWDDLEYKAIQSVLDSKMFTM--GEYVKQYETQFAKTFGSK---YAVMVSSGSTANLLMIAALFFTKKPRLKKG 80 (390)
T ss_dssp BCSCCCCCCHHHHHHHHHHHHHTCCSS--CHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHTTSSSSCSCCTT
T ss_pred ccCCCCCCCHHHHHHHHHHHHcCCCCC--ChHHHHHHHHHHHHHCCC---cEEEECCHHHHHHHHHHHHHhhhhcCCCCc
Confidence 3457888999999998875432 2223 467889999999999976 3688899999999999887 7899
Q ss_pred CeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHH
Q 017726 85 DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLL 163 (367)
Q Consensus 85 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~ 163 (367)
|+|+++.++|++.. ..++..|++++.++.+++ +.+|+++++++++ +++++|++++ ++|...|+++|.++|
T Consensus 81 ~~Vi~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~----~~~~~v~~~~---~~g~~~~~~~i~~l~ 151 (390)
T 3b8x_A 81 DEIIVPAVSWSTTY--YPLQQYGLRVKFVDIDINTLNIDIESLKEAVT----DSTKAILTVN---LLGNPNNFDEINKII 151 (390)
T ss_dssp CEEEEESSSCHHHH--HHHHHTTCEEEEECBCTTTCSBCHHHHHHHCC----TTEEEEEEEC---GGGCCCCHHHHHHHH
T ss_pred CEEEECCCCcHHHH--HHHHHcCCEEEEEecCccccCcCHHHHHHHhC----cCCeEEEEEC---CccChhhHHHHHHHH
Confidence 99999999888764 345678999999999865 7899999999997 4679998874 678889999999999
Q ss_pred HhcCCCcEEEEeeeeccCceeeccccccc--eEEEec--CCCcccCCCcceeeeeCH-HHHHHhccCCCCceeec-----
Q 017726 164 DEYRHPALFLVDGVSSICAIDFRMDEWGI--DVALTG--SQKALSLPTGMGIVCASP-KALEASKTAKSVRVFFD----- 233 (367)
Q Consensus 164 ~~~~~~~~vi~D~~~~~~~~~~~~~~~~~--d~~~~s--~~K~~~g~~g~g~~~~~~-~~~~~~~~~~~~~~~~~----- 233 (367)
++ +|+++|+|++|+.+... +....+. |+.++| ++|.+.++.| |+++.++ ++.+++......+...+
T Consensus 152 ~~--~~~~li~D~a~~~g~~~-~~~~~g~~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~ 227 (390)
T 3b8x_A 152 GG--RDIILLEDNCESMGATF-NNKCAGTFGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKN 227 (390)
T ss_dssp TT--SCCEEEEECTTCTTCEE-TTEETTSSSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEE
T ss_pred HH--cCCEEEEECcCcccCEE-CCcccccccceEEEEccCCCCCccCCc-eEEEeCCHHHHHHHHHHHhcCCCccccccc
Confidence 99 99999999999987654 4433343 555544 3566655566 8888876 56555543221110000
Q ss_pred --------hH-HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCcc
Q 017726 234 --------WK-DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEW 303 (367)
Q Consensus 234 --------~~-~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~ 303 (367)
+. .....++..++...+.++...+++. +++. ++++.++.+++++++.+.|+++ |+.+..+. ..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~-~l~~-----l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~ 300 (390)
T 3b8x_A 228 KVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIE-QLKK-----LPRFISVRRKNAEYFLDKFKDHPYLDVQQET-GE 300 (390)
T ss_dssp TTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHH-HHHH-----HHHHHHHHHHHHHHHHHHHTTCSSEEECCCC-SB
T ss_pred cccccccccccccccceeccccccCcCHHHHHHHHH-HHHH-----HHHHHHHHHHHHHHHHHHhcCCCCcccCCCC-CC
Confidence 00 0000001111111244554433333 2332 5677888899999999999987 77665432 11
Q ss_pred CCCceEEEEcCC--CCCHHHHHHHHHhhCCeEEccCCCC---CC----------------------CcEEEEeecCCCCH
Q 017726 304 FSDTVTAVIVPS--HINSSEIVRRAWQRYNLSLGLGLNK---VA----------------------GKVFRIGHLGHLNE 356 (367)
Q Consensus 304 ~~~~~~~~~~~~--~~~~~~l~~~L~~~~gv~v~~g~~~---~~----------------------~~~iRi~~~~~~~~ 356 (367)
.....+.+.++. +.+.+++.+.|.+ .||.+++.+.+ .. ...+|++++...++
T Consensus 301 ~~~~~~~i~~~~~~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~ 379 (390)
T 3b8x_A 301 SSWFGFSFIIKKDSGVIRKQLVENLNS-AGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELF 379 (390)
T ss_dssp CCCCEEEEEECTTSCCCHHHHHHHHHH-TTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCH
T ss_pred cccEEEEEEecCcCcccHHHHHHHHHH-CCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCH
Confidence 223335556642 4678899999965 59999874321 01 02599998888887
Q ss_pred HHHHH
Q 017726 357 VMFNF 361 (367)
Q Consensus 357 ~~~~~ 361 (367)
+|+..
T Consensus 380 ~di~~ 384 (390)
T 3b8x_A 380 DEIDY 384 (390)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-27 Score=214.02 Aligned_cols=295 Identities=14% Similarity=0.103 Sum_probs=206.7
Q ss_pred ChHHHHHHHccCCCC--C--CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC--CCCCeEEEEeCC
Q 017726 20 IPDQVIRAMNRNNED--Y--RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--SPGDRIISFLIG 93 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~--~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~--~~gd~vl~~~~~ 93 (367)
.++.+.+++.+.... + ..+ ......++++.++++++.+. +++++++||++|+..++.++. .+|+.|++.++.
T Consensus 62 ~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~~~-~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~ 139 (395)
T 1vef_A 62 GNPEVVEAVKRQAETLMAMPQTL-PTPMRGEFYRTLTAILPPEL-NRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRG 139 (395)
T ss_dssp TCHHHHHHHHHHHHHCCCCCTTS-CCHHHHHHHHHHHHTSCTTE-EEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTC
T ss_pred CCHHHHHHHHHHHHhCCCCcccc-CCHHHHHHHHHHHHhcCCCc-CEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 667777777764321 1 112 24678899999999998754 469999999999999887653 578999999887
Q ss_pred cchHHHHHHHHHhCCc------------eEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----HH
Q 017726 94 QFSLLWIDQQQRLNFN------------VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LS 157 (367)
Q Consensus 94 ~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~ 157 (367)
|++... ..+...|.+ +..++. .|+++++++++ +++++|++++++||||.+.| ++
T Consensus 140 y~~~~~-~~~~~~g~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~~~~~l~ 209 (395)
T 1vef_A 140 FSGRTM-GSLSVTWEPKYREPFLPLVEPVEFIPY-----NDVEALKRAVD----EETAAVILEPVQGEGGVRPATPEFLR 209 (395)
T ss_dssp CCCSSH-HHHHTCCCHHHHGGGCSCSSCEEEECT-----TCHHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHH
T ss_pred cCCCch-hhhhhcCCcccccccCCCCCCeeEeCC-----CcHHHHHHHhc----cCEEEEEEeCccCCCCccCCCHHHHH
Confidence 766432 223444554 233332 48999999997 46799988888899999887 99
Q ss_pred HHHHHHHhcCCCcEEEEeeeec-cCce----eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceee
Q 017726 158 KVRKLLDEYRHPALFLVDGVSS-ICAI----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF 232 (367)
Q Consensus 158 ~i~~~~~~~~~~~~vi~D~~~~-~~~~----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~ 232 (367)
+|.++|++ +|+++|+|++|+ ++.. +++......|++ |++|+++++.++|++++++++++++....
T Consensus 210 ~i~~l~~~--~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~g~~~G~~~~~~~~~~~l~~~~------ 279 (395)
T 1vef_A 210 AAREITQE--KGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL--TLAKALGGGVPLGVAVMREEVARSMPKGG------ 279 (395)
T ss_dssp HHHHHHHH--HTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCEEEEEEHHHHHTSCTTS------
T ss_pred HHHHHHHH--cCCEEEEEecccCCccCCchhHhhhcCCCCCEE--EEcccccCCCceEEEEehHHHHhhhccCC------
Confidence 99999999 999999999998 3211 122223346776 55999987677899999999877665310
Q ss_pred chHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEE
Q 017726 233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVI 312 (367)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~ 312 (367)
.+ ..++++...+.++.++++.+.+. +..++..++++++.+.|++++.++....+ ..+.++++.
T Consensus 280 ----------~~--~~~~~~~~~~~a~~~al~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~g~~~~~~ 342 (395)
T 1vef_A 280 ----------HG--TTFGGNPLAMAAGVAAIRYLERT---RLWERAAELGPWFMEKLRAIPSPKIREVR--GMGLMVGLE 342 (395)
T ss_dssp ----------SC--CSSTTCHHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTSCCTTEEEEE--EETTEEEEE
T ss_pred ----------cC--CCcCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhcCceEEEE--EEEEEEEEE
Confidence 01 13456776777777788876653 45668888999999999887543321111 234577888
Q ss_pred cCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 313 VPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 313 ~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
++. +..++.+.|.+++||.+.++ .++++||++....+.+++
T Consensus 343 ~~~--~~~~l~~~l~~~~gi~v~~~----~~~~iRi~~~~~~~~~~i 383 (395)
T 1vef_A 343 LKE--KAAPYIARLEKEHRVLALQA----GPTVIRFLPPLVIEKEDL 383 (395)
T ss_dssp ESS--CSHHHHHHHHHHHCEECEES----STTEEEECCCTTCCHHHH
T ss_pred EcC--hHHHHHHHHHHHCCeEEecC----CCCEEEEeCCCCCCHHHH
Confidence 853 36789999983459999875 256899987555554443
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-26 Score=210.22 Aligned_cols=257 Identities=15% Similarity=0.118 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH-H-HHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL-W-IDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~-~-~~~~~~~g~~~~~v~~~~~ 118 (367)
.....++++.+++++|.+ +. ++++||++|+..++.+++.+||+|+++.+.|.+.. + ...++..|+++..++.+
T Consensus 113 ~~~~~~l~~~lA~l~g~~--~~-v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-- 187 (445)
T 1qgn_A 113 NPTTVVLEEKISALEGAE--ST-LLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA-- 187 (445)
T ss_dssp CHHHHHHHHHHHHHHTCS--EE-EEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS--
T ss_pred ChHHHHHHHHHHHHhCCC--cE-EEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC--
Confidence 366789999999999985 33 44566779999999988999999999999877654 2 22456789999999864
Q ss_pred CCCCHHHHHHHHhccCCCCc-cEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEe
Q 017726 119 EGAKLDVLASKLAADTAHTI-KAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALT 197 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~-~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~ 197 (367)
|++++++++++ ++ ++|++++|+||+|.+.|+++|.++|++ +|+++++|++|+.+... .....++|++++
T Consensus 188 ---d~~~l~~ai~~----~tv~lV~le~p~NptG~v~dl~~I~~la~~--~g~~livD~a~~~~~~~-~~~~~g~Div~~ 257 (445)
T 1qgn_A 188 ---DVGALELALNQ----KKVNLFFTESPTNPFLRCVDIELVSKLCHE--KGALVCIDGTFATPLNQ-KALALGADLVLH 257 (445)
T ss_dssp ---CHHHHHHHHHH----SCEEEEEEESSCTTTCCCCCHHHHHHHHHH--TTCEEEEECTTTCTTTC-CTTTTTCSEEEE
T ss_pred ---CHHHHHHHhcc----CCCCEEEEeCCCCCCCcccCHHHHHHHHHH--cCCEEEEECCCcccccC-CccccCCEEEEE
Confidence 89999999984 66 999999999999999999999999999 99999999999865432 233458999999
Q ss_pred cCCCcccCCCc---ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHH
Q 017726 198 GSQKALSLPTG---MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENV 274 (367)
Q Consensus 198 s~~K~~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~ 274 (367)
|+||+++ +.| +|++++++++++++.... + ..|. +++....+.+..+++. +..+
T Consensus 258 S~sK~~g-g~gd~~~G~l~~~~~l~~~l~~~~-------------~-~~g~----~~~~~~a~~~~~~l~~-----l~~r 313 (445)
T 1qgn_A 258 SATKFLG-GHNDVLAGCISGPLKLVSEIRNLH-------------H-ILGG----ALNPNAAYLIIRGMKT-----LHLR 313 (445)
T ss_dssp CTTTTTT-CSSSCCCEEEEECHHHHHHHHHHH-------------H-HHCC----CCCHHHHHHHHHHGGG-----HHHH
T ss_pred CCccccc-ccccceEEEEEECHHHHHHHHHHH-------------H-HhCC----CCCHHHHHHHHHhHHH-----HHHH
Confidence 9999996 444 799999999887765320 0 1121 2343322222223322 4455
Q ss_pred HHHHHHHHHHHHHHHHHc-CC-ccccCC----Cc--------cCCCceEEEEcCCCC-CHHHHHHHHHhhCCeEEccC
Q 017726 275 IERHRRLGKATRLAVEAW-GL-KNCTQK----EE--------WFSDTVTAVIVPSHI-NSSEIVRRAWQRYNLSLGLG 337 (367)
Q Consensus 275 ~~~~~~~~~~l~~~L~~~-g~-~~~~~~----~~--------~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~v~~g 337 (367)
.++..++++++.+.|++. ++ .+..|. +. ...+.+++|.++.+. +...+.+.|. ..++.+..|
T Consensus 314 ~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~-~~~i~~s~G 390 (445)
T 1qgn_A 314 VQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALK-IPYIAPSFG 390 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCS-SSEECSCCC
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCC-CceEeccCC
Confidence 667778889999999887 55 343331 10 014568889984321 1334555442 236666555
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-26 Score=202.83 Aligned_cols=251 Identities=13% Similarity=0.083 Sum_probs=177.6
Q ss_pred HHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCH
Q 017726 46 TLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKL 123 (367)
Q Consensus 46 ~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~ 123 (367)
++++.+++++|.+ + .++++||++|+..++.+++.+||+|+++.+.|++.. +...++..|++++.++. .|+
T Consensus 2 ~l~~~la~~~g~~--~-~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~ 73 (331)
T 1pff_A 2 ALEGKIAKLEHAE--A-CAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM-----AVP 73 (331)
T ss_dssp HHHHHHHHHHTCS--E-EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-----TST
T ss_pred hHHHHHHHHhCCC--e-EEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC-----CCH
Confidence 6899999999986 3 445566699999999988899999999999888764 22225668999998876 378
Q ss_pred HHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcc
Q 017726 124 DVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKAL 203 (367)
Q Consensus 124 e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~ 203 (367)
++++++++ +++++|++++++||||.+.|+++|.++|++. +|+++++|++|+.+....+. ..+.|++++|+||++
T Consensus 74 ~~l~~~i~----~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~-~~~~li~D~a~~~~~~~~~~-~~~~d~~~~s~~K~~ 147 (331)
T 1pff_A 74 GNIEKHLK----PNTRIVYFETPANPTLKVIDIEDAVKQARKQ-KDILVIVDNTFASPILTNPL-DLGVDIVVHSATKYI 147 (331)
T ss_dssp THHHHTCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHTTS-SSCEEEEECTTTHHHHCCGG-GGTCSEEEEETTTTT
T ss_pred HHHHHhhc----CCCeEEEEECCCCCcCcccCHHHHHHHHhhh-cCCEEEEECCCcccccCChh-hcCCcEEEEECcccc
Confidence 89999887 4679999999999999999999999999863 68999999999876654344 457899999999999
Q ss_pred cCCCc--ceeeeeCH-HHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHH
Q 017726 204 SLPTG--MGIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRR 280 (367)
Q Consensus 204 ~g~~g--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~ 280 (367)
+++.+ +|++++++ ++++++....... . .++.+.....++..+++.+ ....++..+
T Consensus 148 ~~~~~r~~G~~~~~~~~~~~~l~~~~~~~--~---------------~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~ 205 (331)
T 1pff_A 148 NGHTDVVAGLVCSRADIIAKVKSQGIKDI--T---------------GAIISPHDAWLITRGTLTL-----DMRVKRAAE 205 (331)
T ss_dssp SSSSSCCCEEEEECHHHHHHHHHTCCCCC--C---------------CCCCCHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhh--c---------------CCCCCHHHHHHHHcCcchH-----HHHHHHHHH
Confidence 87665 69999998 8888776542210 0 1134443333333444432 333445556
Q ss_pred HHHHHHHHHHHc-C--------------CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccC
Q 017726 281 LGKATRLAVEAW-G--------------LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLG 337 (367)
Q Consensus 281 ~~~~l~~~L~~~-g--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g 337 (367)
+.+.+.+.|++. . +++..+.. ...+.++.|.++ +.+++.+.|. ++||.++..
T Consensus 206 ~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~l~-~~gI~~~~~ 272 (331)
T 1pff_A 206 NAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQM-KMFGSMIAFDVD---GLEKAKKVLD-NCHVVSLAV 272 (331)
T ss_dssp HHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHC-SSCCSEEEEECS---SHHHHHHHHH-TCSSSEECS
T ss_pred HHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhC-CCCceEEEEEEC---CHHHHHHHHH-hCCCceecc
Confidence 666666666653 1 11111100 123457788874 5667777775 569977543
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=213.51 Aligned_cols=313 Identities=14% Similarity=0.073 Sum_probs=202.0
Q ss_pred ccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHh-cCCC----CceE--EecCChhHHHHHH---HHccCC
Q 017726 13 FVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIF-KTTS----GTPF--LIPTTGTGAWESA---LTNTLS 82 (367)
Q Consensus 13 ~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~----~~~v--~~~~ggt~al~~~---~~~~~~ 82 (367)
+.++|+.+.+++.++.. ....+|.......++|+.+++++ +... ++++ ..+.+|++++..+ +.+++.
T Consensus 53 d~~~~~~v~~a~~~a~~---~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~ 129 (409)
T 4eu1_A 53 DDADQPFVLECVKQATL---GTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVA 129 (409)
T ss_dssp CTTSCCCCCHHHHTCCC---CSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSS
T ss_pred CCCCCEeecHHHHhcCc---cccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcC
Confidence 44555555555555511 11223332344568999999986 5541 3346 3488899999865 345678
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC--CCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHH---
Q 017726 83 PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES--DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLS--- 157 (367)
Q Consensus 83 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~--- 157 (367)
+||.|++..|.|.++. ..++..|.+++.++. +.++.+|++++++++++.. ++++++++++|+||||.+++.+
T Consensus 130 ~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~i~~~~p~NPtG~~~~~~~l~ 206 (409)
T 4eu1_A 130 NCNRIYGPDVGYPNHE--SIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAP-EGSVILVHACAHNPTGVDPTHDDWR 206 (409)
T ss_dssp SCCEEEEESSCCTHHH--HHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSC-TTCEEEEESSSCTTTCCCCCHHHHH
T ss_pred CCCEEEEeCCCcHhHH--HHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCC-CCcEEEEECCCCCCCCCCCCHHHHH
Confidence 9999999999887753 567789999999997 3456889999999997532 3567778899999999999854
Q ss_pred HHHHHHHhcCCCcEEEEeeeeccCceee------c---c-ccccceEEEecCCCcccCCCc--ceee---eeCHHHHHHh
Q 017726 158 KVRKLLDEYRHPALFLVDGVSSICAIDF------R---M-DEWGIDVALTGSQKALSLPTG--MGIV---CASPKALEAS 222 (367)
Q Consensus 158 ~i~~~~~~~~~~~~vi~D~~~~~~~~~~------~---~-~~~~~d~~~~s~~K~~~g~~g--~g~~---~~~~~~~~~~ 222 (367)
+|.++|++ +|+++|+|++|+.+...- . . ......+++.|++|.++ .+| +|++ +.+++..+.+
T Consensus 207 ~i~~~~~~--~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~riG~~~~v~~~~~~~~~l 283 (409)
T 4eu1_A 207 QVCDVIKR--RNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFG-LYGHRCGALHISTASAEEAKRL 283 (409)
T ss_dssp HHHHHHHH--TTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSS-CGGGCCEEEEEECSSHHHHHHH
T ss_pred HHHHHHHh--CCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCccccc-CccCCceEEEEEeCCHHHHHHH
Confidence 58888999 999999999987543211 1 1 11234588899999984 445 6885 5667733333
Q ss_pred ccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH-----HhChHHHHHHHHHHHHHHHHHHHHcC----
Q 017726 223 KTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-----EEGLENVIERHRRLGKATRLAVEAWG---- 293 (367)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~-----~~g~~~~~~~~~~~~~~l~~~L~~~g---- 293 (367)
.... ....... ..+++.....++..++.... ...+++.++++.++++++.+.|+++|
T Consensus 284 ~~~~------------~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 349 (409)
T 4eu1_A 284 VSQL------------ALLIRPM--YNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHD 349 (409)
T ss_dssp HHHH------------HHHHHHH--HSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSC
T ss_pred HHHH------------HHHHhhh--cCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 2100 0000000 11244544445555554321 12267788899999999999999986
Q ss_pred CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHhhhh
Q 017726 294 LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQLLF 365 (367)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 365 (367)
+.+..+ .++.+.+..+ + .++++.|.+++||.+.++ .||++.. ..++.+...++|.
T Consensus 350 ~~~~~~----~~~~~~~~~~----~-~~~~~~ll~~~gv~v~p~--------~Ri~~~~~~~~~i~~~~~~l~ 405 (409)
T 4eu1_A 350 WSHIER----QVGMMAYTGL----T-REQVELLRSEYHIYMTLN--------GRAAVSGLNSTNVEYVSQAIH 405 (409)
T ss_dssp CHHHHH----SCSSEEECCC----C-HHHHHHHHHHHCEECCTT--------CEEEGGGCCTTTHHHHHHHHH
T ss_pred cceecC----CceEEEEeCC----C-HHHHHHHHHcCCEEEcCC--------CEEEEEecCHhhHHHHHHHHH
Confidence 666555 3554444332 3 356677777779999875 3777644 3334555555554
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=206.56 Aligned_cols=285 Identities=11% Similarity=0.121 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
....+++++.+++++|.+. .++++||++|+..++.+++.+||+|+++.+.|++.. +...++..|+++..++.+
T Consensus 81 ~p~~~~le~~lA~l~g~~~---~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~-- 155 (415)
T 2fq6_A 81 TLTHFSLQQAMCELEGGAG---CVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL-- 155 (415)
T ss_dssp CHHHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT--
T ss_pred CchHHHHHHHHHHHhCCCe---EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCC--
Confidence 3667899999999999753 456688999999999999999999999999888764 323456679999998764
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ ++||+|++++++||+|.+.|+++|.++|++.++|+++++|++++.+....+. ..++|++++|
T Consensus 156 ---d~~~le~ai~----~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~-~~g~Div~~S 227 (415)
T 2fq6_A 156 ---IGADIVKHLQ----PNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKAL-DFGIDVSIQA 227 (415)
T ss_dssp ---CGGGGGGGCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGG-GGTCSEEEEE
T ss_pred ---CHHHHHHhhc----cCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCcc-ccCCeEEEEe
Confidence 7899999987 4679999999999999999999999999874468999999999854322222 3579999999
Q ss_pred CCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 199 SQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
+||+++++.+ .|+++.++++++++... . ...|+ ..+....+.+..+++. +..+.+
T Consensus 228 ~sK~lg~~g~~~~G~l~~~~~~~~~l~~~-------------~-~~~G~----~~~~~~a~~~~~~l~~-----l~~r~~ 284 (415)
T 2fq6_A 228 ATKYLVGHSDAMIGTAVCNARCWEQLREN-------------A-YLMGQ----MVDADTAYITSRGLRT-----LGVRLR 284 (415)
T ss_dssp TTTTTTCSSSCCCEEEEECTTTHHHHHHH-------------H-HHTTC----CCCHHHHHHHHHHHHH-----HHHHHH
T ss_pred CccccCCCCCceEEEEEeCHHHHHHHHHH-------------H-HhcCC----CCCHHHHHHHHhhhhH-----HHHHHH
Confidence 9999975543 59999998877666532 0 01122 2333222222223333 345566
Q ss_pred HHHHHHHHHHHHHHHc-CCcc-ccCC----Cc--------cCCCceEEEEcCCCC---CHHHHHHHHHhhCCeEEccCCC
Q 017726 277 RHRRLGKATRLAVEAW-GLKN-CTQK----EE--------WFSDTVTAVIVPSHI---NSSEIVRRAWQRYNLSLGLGLN 339 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~~~-~~~~----~~--------~~~~~~~~~~~~~~~---~~~~l~~~L~~~~gv~v~~g~~ 339 (367)
+..+++..+.+.|++. .+.. ..|. +. ...+.+++|.++.+. +...+.+.| +..++.+..|..
T Consensus 285 ~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l-~~~~~a~s~G~~ 363 (415)
T 2fq6_A 285 QHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNF-SLFSMAYSWGGY 363 (415)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTC-SSCEECSCCCSS
T ss_pred HHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhC-CcCeEeccCCCC
Confidence 7788888899998886 3321 1111 10 124568899985321 233344433 233455554411
Q ss_pred ---------------------CCCCcEEEEeecCCCCHHHHHHhh
Q 017726 340 ---------------------KVAGKVFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 340 ---------------------~~~~~~iRi~~~~~~~~~~~~~~~ 363 (367)
...++.||+|+ +..+.+|++..+
T Consensus 364 ~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~-G~e~~~d~i~~l 407 (415)
T 2fq6_A 364 ESLILANQPEHIAAIRPQGEIDFSGTLIRLHI-GLEDVDDLIADL 407 (415)
T ss_dssp SCEEEEECHHHHHTTCTTCCCCCCSCEEEEEC-CSSCHHHHHHHH
T ss_pred ceeEEecCCCccccccchhhcCCCCCEEEEEe-cCCCHHHHHHHH
Confidence 11246799994 666666555444
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-26 Score=210.19 Aligned_cols=290 Identities=13% Similarity=0.048 Sum_probs=200.2
Q ss_pred CChHHHHHHHccCCCCCCCCcH-HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchH
Q 017726 19 HIPDQVIRAMNRNNEDYRSPAV-PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSL 97 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~ 97 (367)
+.|+.+++++.+...... |.. .....++++.++++++.+ ++++++||++|+..++.++. +||+|+++.++|++.
T Consensus 29 ~~p~~~~~a~~~~~~~~~-y~~~~~~~~~l~~~la~~~~~~---~v~~~~ggt~al~~~l~~l~-~gd~Vlv~~~~~~~~ 103 (424)
T 2po3_A 29 IDRARLYERLDRALDSQW-LSNGGPLVREFEERVAGLAGVR---HAVATCNATAGLQLLAHAAG-LTGEVIMPSMTFAAT 103 (424)
T ss_dssp CCHHHHHHHHHHHHHHTC-CSSSCHHHHHHHHHHHHHHTSS---EEEEESCHHHHHHHHHHHHT-CCSEEEEESSSCTHH
T ss_pred CChHHHHHHHHHHHhcCC-cccCCHHHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHcC-CCCEEEECCCccHHH
Confidence 446788888776543222 222 467889999999999874 48999999999999998864 789999999998876
Q ss_pred HHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEee
Q 017726 98 LWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDG 176 (367)
Q Consensus 98 ~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~ 176 (367)
. ..++..|++++.++.++ ++.+|+++++++++ +++++|++++ |+|...++++|.++|++ +|+++|+|+
T Consensus 104 ~--~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~----~~~~~v~~~~---~tG~~~~l~~i~~la~~--~~~~li~De 172 (424)
T 2po3_A 104 P--HALRWIGLTPVFADIDPDTGNLDPDQVAAAVT----PRTSAVVGVH---LWGRPCAADQLRKVADE--HGLRLYFDA 172 (424)
T ss_dssp H--HHHHHTTCEEEEECBCTTTSSBCHHHHGGGCC----TTEEEEEEEC---GGGCCCCHHHHHHHHHH--TTCEEEEEC
T ss_pred H--HHHHHcCCEEEEEecCCCcCCcCHHHHHHhhC----cCCcEEEEEC---CCCCcCCHHHHHHHHHH--cCCEEEEEC
Confidence 4 45677899999999876 56789999999887 4679998864 79999999999999999 999999999
Q ss_pred eeccCceeeccccc--cceEEEecCC--CcccCCCcceeeeeC-HHHHHHhccCCCCceeechHHHHHHhhcCCccCCCC
Q 017726 177 VSSICAIDFRMDEW--GIDVALTGSQ--KALSLPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTP 251 (367)
Q Consensus 177 ~~~~~~~~~~~~~~--~~d~~~~s~~--K~~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (367)
+|+.+.. ++.... ..|++++|+| |++++ .++|+++.+ +++++++...........+ .....+. .+..
T Consensus 173 a~~~g~~-~~~~~~~~~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l~~~l~~~~~~~~~~~~----~~~~~g~--~~~~ 244 (424)
T 2po3_A 173 AHALGCA-VDGRPAGSLGDAEVFSFHATKAVNA-FEGGAVVTDDADLAARIRALHNFGFDLPG----GSPAGGT--NAKM 244 (424)
T ss_dssp TTCTTCE-ETTEETTSSSSEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHHBTTTTCTT----CCTTCCC--BCCC
T ss_pred ccccCCe-ECCeecccccCEEEEeCCCCCCccC-CCCeEEEeCCHHHHHHHHHHHhcCccccc----cccccCc--CCCc
Confidence 9996543 221111 1478888877 98875 446999998 7887776542111000000 0000010 1112
Q ss_pred cHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCcccc-CCCccCCCceEEEEcCC---CCCHHHHHHHH
Q 017726 252 SIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCT-QKEEWFSDTVTAVIVPS---HINSSEIVRRA 326 (367)
Q Consensus 252 ~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~l~~~L 326 (367)
+.. +...++.. ..++++..++..++++++.+.|+++ |+.+.. +........++.+.+++ +.+..++.+.|
T Consensus 245 ~~~---~aa~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L 319 (424)
T 2po3_A 245 SEA---AAAMGLTS--LDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATTGIHRDLVMEVL 319 (424)
T ss_dssp CHH---HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHHSSCHHHHHHHH
T ss_pred CHH---HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCccchhhHHHHHHHH
Confidence 221 12222222 2236677888888999999999887 777765 22211222456577753 56788999988
Q ss_pred HhhCCeEEccCC
Q 017726 327 WQRYNLSLGLGL 338 (367)
Q Consensus 327 ~~~~gv~v~~g~ 338 (367)
.+ +||.+.+.+
T Consensus 320 ~~-~gI~v~~~~ 330 (424)
T 2po3_A 320 KA-EGVHTRAYF 330 (424)
T ss_dssp HH-TTEECBCTT
T ss_pred HH-CCCceeccc
Confidence 65 599998744
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-26 Score=209.18 Aligned_cols=293 Identities=15% Similarity=0.082 Sum_probs=204.1
Q ss_pred ChHHHHHHHccCCCC--CC-CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCC----------CCe
Q 017726 20 IPDQVIRAMNRNNED--YR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSP----------GDR 86 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~----------gd~ 86 (367)
.++.+.+++.+.... +. .....+...++++++++++| .+.+++++||++|+..++..+..+ +++
T Consensus 53 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g---~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~ 129 (392)
T 3ruy_A 53 RHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLTN---KEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAE 129 (392)
T ss_dssp TCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCE
T ss_pred CCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC---CCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcE
Confidence 357777777764322 11 11223567899999999998 335999999999999988765433 679
Q ss_pred EEEEeCCcchHHHHHHHHHhCC------------ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc
Q 017726 87 IISFLIGQFSLLWIDQQQRLNF------------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN 154 (367)
Q Consensus 87 vl~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~ 154 (367)
|++..+.|++.... .....+. .+..++.+ |+++++++++ +++++|++++++||||.+.
T Consensus 130 vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~----~~~~~v~~~~~~nptG~~~ 199 (392)
T 3ruy_A 130 IIVCEDNFHGRTMG-AVSMSSNEEYKRGFGPMLPGIIVIPYG-----DLEALKAAIT----PNTAAFILEPIQGEAGINI 199 (392)
T ss_dssp EEEETTCCCCSSHH-HHHTCSCTTTTTTCCSCCSSEEEECTT-----CHHHHHHHCC----TTEEEEEECSSBSTTTSBC
T ss_pred EEEEcCCcCCCCHh-hhhccCChhhccccCCCCCCCeeeCcc-----cHHHHHHHhc----cCeEEEEEeCccCCCCCcc
Confidence 99999988775421 1111111 23344432 7999999997 4789999999999999999
Q ss_pred c----HHHHHHHHHhcCCCcEEEEeeeeccCc-----eeeccccccceEEEecCCCcccCC-CcceeeeeCHHHHHHhcc
Q 017726 155 N----LSKVRKLLDEYRHPALFLVDGVSSICA-----IDFRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKT 224 (367)
Q Consensus 155 ~----~~~i~~~~~~~~~~~~vi~D~~~~~~~-----~~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~~ 224 (367)
| +++|.++|++ +|+++|+|++|+... ...+......|++++ +|+++|. .++|++++++++++.+..
T Consensus 200 ~~~~~l~~i~~l~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~--SK~l~gG~~~~G~~~~~~~~~~~~~~ 275 (392)
T 3ruy_A 200 PPAGFLKEALEVCKK--ENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYIL--GKALGGGVFPISCAAANRDILGVFEP 275 (392)
T ss_dssp CCTTHHHHHHHHHHT--TTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTTTSCCEEEEECHHHHTTCCT
T ss_pred CCHHHHHHHHHHHHH--cCCEEEEeechhCCCccccchhhhccCCCCCEEEE--chhhhCChhhhEEEEECHHHHhhhcc
Confidence 8 9999999999 999999999996321 112222334677766 5988763 447999999998876654
Q ss_pred CCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccC
Q 017726 225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWF 304 (367)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 304 (367)
... +. .++.+...+.++.++++.+.. ++..++..++++++.+.|++++........ .
T Consensus 276 ~~~----------------~~--~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~ 332 (392)
T 3ruy_A 276 GSH----------------GS--TFGGNPLACAVSIAALEVLEE---EKLTERSLQLGEKLVGQLKEIDNPMITEVR--G 332 (392)
T ss_dssp TSS----------------CC--SSTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTTCCCTTEEEEE--E
T ss_pred CCc----------------CC--CCCCCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHhcCCCceEEE--e
Confidence 311 11 446777777777778887655 356778899999999999887533222111 1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 305 SDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 305 ~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
.+.++++.++. +..++.+.|.+ +||.+.++. ++++|+++....+.+++
T Consensus 333 ~g~~~~~~~~~--~~~~l~~~l~~-~gi~v~~~~----~~~iRi~~~~~~~~~~i 380 (392)
T 3ruy_A 333 KGLFIGIELNE--PARPYCEQLKA-AGLLCKETH----ENVIRIAPPLVISEEDL 380 (392)
T ss_dssp ETTEEEEEESS--CSHHHHHHHHT-TTEECCCBT----TTEEEECCCTTCCHHHH
T ss_pred eeeEEEEEEcc--hHHHHHHHHHH-CCcEEecCC----CCEEEEECCCCCCHHHH
Confidence 23466666743 67899999974 599998754 47899996555554443
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=215.51 Aligned_cols=166 Identities=17% Similarity=0.165 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 119 (367)
...+++++++++++|.+ ++++++||++|+..++. ++.+||+|+++.+.|.+.. +...++..|++++.++.+
T Consensus 133 ~~~~~l~~~la~~~g~~---~~i~~~sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~--- 205 (464)
T 1ibj_A 133 PTRDALESLLAKLDKAD---RAFCFTSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT--- 205 (464)
T ss_dssp HHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT---
T ss_pred HHHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC---
Confidence 46889999999999965 36777888999988775 7899999999999887764 223456789999999874
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecC
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS 199 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~ 199 (367)
|+++++++++ +++++|++++|+||||.+.|+++|.++|++ +|+++|+|++|+.+....+. ..++|+++.|+
T Consensus 206 --d~~~l~~~i~----~~tk~v~l~~p~NptG~v~~l~~i~~la~~--~gi~livDea~~~g~~~~~~-~~~~div~~S~ 276 (464)
T 1ibj_A 206 --KLDEVAAAIG----PQTKLVWLESPTNPRQQISDIRKISEMAHA--QGALVLVDNSIMSPVLSRPL-ELGADIVMHSA 276 (464)
T ss_dssp --SHHHHHHHCC----SSEEEEEECSSCTTTCCCCCHHHHHHHHHT--TTCEEEEECTTTCTTTCCGG-GTTCSEEEEET
T ss_pred --CHHHHHHHhc----cCceEEEEeCCCCCCCEeecHHHHHHHHHH--cCCEEEEECCCcccccCChh-hcCCEEEEECC
Confidence 8999999997 478999999999999999999999999999 99999999999876542222 25789999999
Q ss_pred CCcccCCCcc--eeeeeCH-HHHHHhc
Q 017726 200 QKALSLPTGM--GIVCASP-KALEASK 223 (367)
Q Consensus 200 ~K~~~g~~g~--g~~~~~~-~~~~~~~ 223 (367)
||+++|+.|+ |++++++ ++++++.
T Consensus 277 sK~~~g~~Gl~~G~l~~~~~~l~~~l~ 303 (464)
T 1ibj_A 277 TKFIAGHSDVMAGVLAVKGEKLAKEVY 303 (464)
T ss_dssp TTTTTCSSCCCCEEEEECSHHHHHHHH
T ss_pred cccccCCCCCcEEEEEEChHHHHHHHH
Confidence 9999887765 9999985 6766665
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-26 Score=207.87 Aligned_cols=281 Identities=16% Similarity=0.162 Sum_probs=198.2
Q ss_pred HHHHHHHccCCCC------CCCCcH-HHHHHHHHHHHHHHhcCCCCceEEe--cCChhHHHHHHHHccCCCCCeEEEEe-
Q 017726 22 DQVIRAMNRNNED------YRSPAV-PALTKTLLEDIKKIFKTTSGTPFLI--PTTGTGAWESALTNTLSPGDRIISFL- 91 (367)
Q Consensus 22 ~~v~~a~~~~~~~------~~~~~~-~~~~~~~~~~la~~~~~~~~~~v~~--~~ggt~al~~~~~~~~~~gd~vl~~~- 91 (367)
++|++++.+.... ..++.+ ....+++++.+++++|.+. .+++ ++||++|+..++.++++|||+|++.+
T Consensus 47 ~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g~e~--alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~ 124 (427)
T 3hvy_A 47 LKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNTES--AFVRPHFVNGTHAIGAALFGNLRPNDTMMSICG 124 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCSE--EEEETTCCSHHHHHHHHHHHTCCTTCEEEECSS
T ss_pred HHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhCCCc--eEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 5677887774221 111211 1247899999999999875 3443 78999999999999999999999998
Q ss_pred CCcchHH-HH--------HHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEe----cCCCccccccHHH
Q 017726 92 IGQFSLL-WI--------DQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVH----NETATGVTNNLSK 158 (367)
Q Consensus 92 ~~~~~~~-~~--------~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~----~~n~tG~~~~~~~ 158 (367)
+.|.+.. +. ..++..|++++.++. +++.+|+++++++++++ +++|+|++++ |+||+|.+.|+++
T Consensus 125 ~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~-~~~~~d~e~l~~~i~~~--~~tklV~i~~s~gyp~nptg~v~dl~~ 201 (427)
T 3hvy_A 125 MPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL-KDGKVDINTVKEELKKD--DSIKLIHIQRSTGYGWRKSLRIAEIAE 201 (427)
T ss_dssp SCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC-BTTBCCHHHHHHHHHHC--TTEEEEEEESSCCSSSSCCCCHHHHHH
T ss_pred CCchhHHHHhccccchhhhHHHHcCCEEEEecC-CCCCcCHHHHHHHhhCC--CCCEEEEEECCCCCCCCccccHHHHHH
Confidence 7676653 21 234567999999998 67889999999999842 2679999999 9999999999999
Q ss_pred HHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccC---CCcceeeeeCHHHHHHhccCCC-Cceeech
Q 017726 159 VRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSL---PTGMGIVCASPKALEASKTAKS-VRVFFDW 234 (367)
Q Consensus 159 i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g---~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~ 234 (367)
|.++|++.++|+++++|++|+.+.........++|++++|+||+++| +.| |++++++++++++..... ...
T Consensus 202 i~~ia~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~G-G~i~~~~~li~~l~~~~~~~~~---- 276 (427)
T 3hvy_A 202 IIKSIREVNENVIVFVDNCYGEFVEEKEPTDVGADIIAGSLIKNIGGGIATTG-GYIAGKEEYVTQATFRVTVPGI---- 276 (427)
T ss_dssp HHHHHHHHCSSSEEEEECTTCTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSC-EEEEECHHHHHHHHHHHSCTTT----
T ss_pred HHHHHHHhCCCCEEEEECCccccccCCCCcccCCeEEEECCcccccccccceE-EEEEECHHHHHHHHHHhhcCCc----
Confidence 99999985569999999999876633333345789999999999976 344 999999999988875211 100
Q ss_pred HHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcC
Q 017726 235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 314 (367)
+. ...++......+...+.. +..+.++..+++.++.+.|+++|+.+.+.....+...++.|.+.
T Consensus 277 ---------g~--~~~~~~~~a~~~~~gl~~-----~~~r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~li~~~~l~ 340 (427)
T 3hvy_A 277 ---------GG--ECGSTFGVMRSLYEGLFM-----APHVTIEAVKGAVFCARIMELAGFDVLPKYNDKRTDIIQAIKFN 340 (427)
T ss_dssp ---------GG--GCCCCTTCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSEEEEECS
T ss_pred ---------cc--ccCCCHHHHHHHHHhHhH-----HHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCCceEEEEEeCC
Confidence 00 001111101122222222 34577788999999999999998877543222233337778874
Q ss_pred CCCCHHHHHHHHHh
Q 017726 315 SHINSSEIVRRAWQ 328 (367)
Q Consensus 315 ~~~~~~~l~~~L~~ 328 (367)
+.....++++.|..
T Consensus 341 ~~~~~~~f~~~l~~ 354 (427)
T 3hvy_A 341 DEKKLIDFIKGIQT 354 (427)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcc
Confidence 32234567777754
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-25 Score=202.22 Aligned_cols=254 Identities=13% Similarity=0.069 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.....++++.+++++|.+ + .++++||++|+..++.+++.+||+|+++.+.|++.. +...++..|++++.++..
T Consensus 58 ~~~~~~l~~~la~~~g~~--~-~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-- 132 (389)
T 3acz_A 58 NPTVEQFEEMVCSIEGAA--G-SAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTS-- 132 (389)
T ss_dssp CHHHHHHHHHHHHHHTCS--E-EEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTT--
T ss_pred ChHHHHHHHHHHHHhCCC--e-EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCC--
Confidence 466789999999999976 3 566678899999999988999999999999888753 334467889999999863
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ +++++|++++|+||+|.+.|+++|.++|++ +|+++++|++++.+....+. ..++|+++.|
T Consensus 133 ---d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~l~~i~~~~~~--~~~~livD~~~~~~~~~~~~-~~~~di~~~S 202 (389)
T 3acz_A 133 ---DVEKVKAAWK----PNTKMVYLESPANPTCKVSDIKGIAVVCHE--RGARLVVDATFTSPCFLKPL-ELGADIALHS 202 (389)
T ss_dssp ---CHHHHHHTCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHH--HTCEEEEECTTTCTTTCCGG-GTTCSEEEEE
T ss_pred ---CHHHHHHhcC----CCCeEEEEECCCCCCCeecCHHHHHHHHHH--cCCEEEEECCCccccccCcc-ccCCeEEEEC
Confidence 8999999987 467999999999999999999999999999 99999999999865432222 2579999999
Q ss_pred CCCcccCCCc--ceeeeeCH-HHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHH
Q 017726 199 SQKALSLPTG--MGIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~ 275 (367)
++|+++++.+ .|++++++ ++++++.... .. .|. +.+....++...+++ .+....
T Consensus 203 ~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~-------------~~-~g~----~~~~~~~~~~~~~l~-----~l~~r~ 259 (389)
T 3acz_A 203 VSKYINGHGDVIGGVSSAKTAEDIATIKFYR-------------KD-AGS----LMAPMDAFLCARGMK-----TLPIRM 259 (389)
T ss_dssp TTTTTTCSSCCCCEEEEESSHHHHHHHHHHH-------------HH-HCC----CCCHHHHHHHHHHHT-----THHHHH
T ss_pred ChhhccCCCCceeEEEEECcHHHHHHHHHHH-------------Hh-cCC----CCCHHHHHHHHcCcc-----HHHHHH
Confidence 9999987765 49999998 8877765321 00 121 233322222222332 244556
Q ss_pred HHHHHHHHHHHHHHHHcC-Ccc-ccC----CCc--------cCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEcc
Q 017726 276 ERHRRLGKATRLAVEAWG-LKN-CTQ----KEE--------WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGL 336 (367)
Q Consensus 276 ~~~~~~~~~l~~~L~~~g-~~~-~~~----~~~--------~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~ 336 (367)
++..+++..+.+.|++.+ +.- ..+ .+. ...+.++.|.++ + .+++.+.| ++.++.++.
T Consensus 260 ~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~-~--~~~~~~~l-~~~~i~~~~ 330 (389)
T 3acz_A 260 QIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMK-S--FEAAKKLM-EHLKVCTLA 330 (389)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES-S--HHHHHHHH-TTCSSSEEB
T ss_pred HHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEEC-C--HHHHHHHH-HhCCCcEEC
Confidence 677778888888888752 111 111 000 012457788884 3 45555555 556887765
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=218.26 Aligned_cols=313 Identities=11% Similarity=-0.040 Sum_probs=206.4
Q ss_pred cccccCCCC--CChHHHHHHHccCC--C---CCCCCcHHHHH-----HHHHHHHHHHhcC-----CCCceEEecCChhHH
Q 017726 10 NHLFVPGPV--HIPDQVIRAMNRNN--E---DYRSPAVPALT-----KTLLEDIKKIFKT-----TSGTPFLIPTTGTGA 72 (367)
Q Consensus 10 ~~~~~~~p~--~~~~~v~~a~~~~~--~---~~~~~~~~~~~-----~~~~~~la~~~~~-----~~~~~v~~~~ggt~a 72 (367)
.+.+..|.+ +.++.+.+++.+.. . ...+|...... .++|+.++++++. .++++|++|+|++++
T Consensus 24 ~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~a 103 (391)
T 3bwn_A 24 VVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRYIVVGTGSTQL 103 (391)
T ss_dssp CEECSSCCCGGGHHHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHH
T ss_pred eeEcCCCCCCCCCCHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHH
Confidence 455555443 33555666653321 1 12233333333 7899999999873 233469999999999
Q ss_pred HHHHHHccCCCCC----eEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCC
Q 017726 73 WESALTNTLSPGD----RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNET 148 (367)
Q Consensus 73 l~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n 148 (367)
+..++.+++.+|| .|+++.|.|.++. ..++..|++++.++.+.++ ++ . +++|+|++++|||
T Consensus 104 l~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~--~~~~~~g~~~~~~~~d~~~-l~--------~----~~~k~v~l~~p~N 168 (391)
T 3bwn_A 104 CQAAVHALSSLARSQPVSVVAAAPFYSTYV--EETTYVRSGMYKWEGDAWG-FD--------K----KGPYIELVTSPNN 168 (391)
T ss_dssp HHHHHHHHHHTSSSSSEEEEECSSCCTHHH--HHHHTTCBTTEEEEEESTT-CC--------C----CSCEEEEEESSCT
T ss_pred HHHHHHHhcCCCCCCcceEEEcCCCchhHH--HHHHHcCCeEEEecCCHHH-cC--------C----CCCEEEEECCCCC
Confidence 9999999989999 9999999887643 5577889999888876432 21 1 4679999999999
Q ss_pred CccccccHHHHHHHHHhcCCCcEEEEeeeeccCce-eeccccccceEEEecCCCcccCCCc--ceeeee-CHHHHHHhcc
Q 017726 149 ATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI-DFRMDEWGIDVALTGSQKALSLPTG--MGIVCA-SPKALEASKT 224 (367)
Q Consensus 149 ~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~-~~~~~~~~~d~~~~s~~K~~~g~~g--~g~~~~-~~~~~~~~~~ 224 (367)
|||.+++ +|++ +++.++++||+|++|..... ++.. ..+.++++.|+||.+ |++| +|++++ ++++++++..
T Consensus 169 PtG~~~~--~l~~--~~~~~~~~ii~De~y~~~~~~~l~~-~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~~l~~~l~~ 242 (391)
T 3bwn_A 169 PDGTIRE--TVVN--RPDDDEAKVIHDFAYYWPHYTPITR-RQDHDIMLFTFSKIT-GHAGSRIGWALVKDKEVAKKMVE 242 (391)
T ss_dssp TTCCCCC--CCC-------CCCEEEEECTTCSTTTSCCCC-CBCCSEEEEEHHHHH-SCGGGCEEEEEECCHHHHHHHHH
T ss_pred CCchhHH--HHHH--HhhcCCCEEEEeCCCCCCCCCcccc-CCCCeEEEEechhhc-CCCccceEEEEecCHHHHHHHHH
Confidence 9999996 3433 22224599999999975321 2221 235789999999988 4666 499997 8888877764
Q ss_pred CCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH---------HhChHHHHHHHHHHHHHHHHHHHHc-CC
Q 017726 225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF---------EEGLENVIERHRRLGKATRLAVEAW-GL 294 (367)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~---------~~g~~~~~~~~~~~~~~l~~~L~~~-g~ 294 (367)
.. ... .++++.....++..+++... +..+++++++++++++.+.+.|+++ ++
T Consensus 243 ~~-------------~~~-----~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 304 (391)
T 3bwn_A 243 YI-------------IVN-----SIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAF 304 (391)
T ss_dssp HH-------------HHH-----HSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSE
T ss_pred Hh-------------ccc-----ccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 21 000 12355555555666665532 2237888999999999999999997 66
Q ss_pred ccccCCCcc---------CCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCC-CcEEEEeecCCCCHHHHHHhhh
Q 017726 295 KNCTQKEEW---------FSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVA-GKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 295 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~-~~~iRi~~~~~~~~~~~~~~~l 364 (367)
.+..+.+.. ..+.++++++++ .+.+.+.| +++||.+.+|..+.. .+++|||+....++.+...+.|
T Consensus 305 ~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~---~~~~~~~l-~~~gV~v~pg~~fg~~~~~iRis~~~~~e~i~~~~~~L 380 (391)
T 3bwn_A 305 TLPKYPEAFCNYFGKSLESYPAFAWLGTKE---ETDLVSEL-RRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERL 380 (391)
T ss_dssp ECCCCCCEEETTTTEEECCCCSEEEEEESS---SCCHHHHH-HHTTEECEEGGGGTCCTTEEEEESCSCHHHHHHHHHHH
T ss_pred ccccCCccccccccccCCCcceEEEecCCc---HHHHHHHH-HHCCEEEccCCCCCCCCCEEEEEecCCHHHHHHHHHHH
Confidence 665442221 233467888853 23455555 566999999865433 5689999875333345555555
Q ss_pred h
Q 017726 365 F 365 (367)
Q Consensus 365 ~ 365 (367)
.
T Consensus 381 ~ 381 (391)
T 3bwn_A 381 A 381 (391)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-26 Score=207.36 Aligned_cols=317 Identities=12% Similarity=0.029 Sum_probs=209.5
Q ss_pred CcccccCC-------CCCChHHHHHHHccCC---CCCCCCcHHHHHHHHHHHHHHHhc-CC----CCc--eEEecCChhH
Q 017726 9 KNHLFVPG-------PVHIPDQVIRAMNRNN---EDYRSPAVPALTKTLLEDIKKIFK-TT----SGT--PFLIPTTGTG 71 (367)
Q Consensus 9 ~~~~~~~~-------p~~~~~~v~~a~~~~~---~~~~~~~~~~~~~~~~~~la~~~~-~~----~~~--~v~~~~ggt~ 71 (367)
+.+++.-| +.++++.+.+++. .. .....|....+..++|+.+++++. .. .++ ++++|+|+++
T Consensus 30 ~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~ 108 (405)
T 3k7y_A 30 EKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTG 108 (405)
T ss_dssp SCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHH
T ss_pred CcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHH
Confidence 45666654 2456788888854 21 122234444566789999988873 21 122 3689999999
Q ss_pred HHHHHHHccCC--CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC-CC-CCCCCHHHHHHHHhccCCCCccEEEEEec-
Q 017726 72 AWESALTNTLS--PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES-DW-GEGAKLDVLASKLAADTAHTIKAICIVHN- 146 (367)
Q Consensus 72 al~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~- 146 (367)
|+.+++.++.. | |.|++++|.|..+. ..++..|.+++.+++ ++ ++.+|++++++++++. +++++++++++
T Consensus 109 al~~~~~~l~~~~~-d~Vlv~~P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~--~~~~~i~l~~~~ 183 (405)
T 3k7y_A 109 AIFVLLEFLKMLNV-ETLYVTNPPYINHV--NMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNI--PNGSSVILQISC 183 (405)
T ss_dssp HHHHHHHHHHTTTC-CEEEEESSCCHHHH--HHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHS--CSSCEEEECCSS
T ss_pred HHHHHHHHHHhcCC-CEEEEeCCCCHhHH--HHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhC--CCCeEEEEeCCC
Confidence 99999888766 8 99999999877653 567889999999997 33 4789999999999753 25678888765
Q ss_pred CCCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccCcee--------e-cc-ccccceEEEecCCCccc-CCCcceee
Q 017726 147 ETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAID--------F-RM-DEWGIDVALTGSQKALS-LPTGMGIV 212 (367)
Q Consensus 147 ~n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~--------~-~~-~~~~~d~~~~s~~K~~~-g~~g~g~~ 212 (367)
|||||.+++ +++|.++|++ ++++||+|++|...... + .+ ......+++.|+||.++ ...++|++
T Consensus 184 ~NPTG~~~s~~~~~~l~~~~~~--~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~ 261 (405)
T 3k7y_A 184 YNPCSVNIEEKYFDEIIEIVLH--KKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGAL 261 (405)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHH--HCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHH--CCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccccceEE
Confidence 899999997 5567788888 99999999998744321 0 00 11235688999999995 23336987
Q ss_pred ee---CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHH---HH--hChHHHHHHHHHHHHH
Q 017726 213 CA---SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLI---FE--EGLENVIERHRRLGKA 284 (367)
Q Consensus 213 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~---~~--~g~~~~~~~~~~~~~~ 284 (367)
++ ++++++++.... ....... ...++.....++..++..- .+ ..++++++++.++++.
T Consensus 262 ~~~~~~~~~~~~~~~~l------------~~~~~~~--~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~ 327 (405)
T 3k7y_A 262 HIVCKNQEEKKIVFNNL------------CFIVRKF--YSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRIL 327 (405)
T ss_dssp EEECSSHHHHHHHHHHH------------HHHHHTT--TSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHH------------HHHHhcc--cCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 666655543210 0010011 1124444333444444321 11 1266778889999999
Q ss_pred HHHHHH----HcC----CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCC
Q 017726 285 TRLAVE----AWG----LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLN 355 (367)
Q Consensus 285 l~~~L~----~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~ 355 (367)
+.+.|+ ++| +.+..+ .+++++|+.++ .+++++| +++||.+.|+. ||++.+ ..+
T Consensus 328 l~~~L~~~~~~~g~~~~~~~~~p----~gg~f~~~~l~-----~~~~~~L-~~~gV~v~p~~--------Ris~a~~~~~ 389 (405)
T 3k7y_A 328 FFNKLETYQKKYNLNYDWNVYKK----QRGLFSFVPLL-----AKIAEHL-KTHHIYIINNG--------RINVSGITKN 389 (405)
T ss_dssp HHHHHHHHGGGGTCCCCGGGGSS----CCSSEEECGGG-----GGGTTTT-TTTTEECCTTS--------EEEGGGCCTT
T ss_pred HHHHHHhhhhhcCCCCCCccccC----CceEEEecCCC-----HHHHHHH-HHCCEeecCCC--------eEEEeccCHH
Confidence 999999 776 466665 56666666553 2556778 78899998852 999866 455
Q ss_pred HHHHHHhhhh
Q 017726 356 EVMFNFQLLF 365 (367)
Q Consensus 356 ~~~~~~~~l~ 365 (367)
+.+...++|.
T Consensus 390 ~i~~~~~~i~ 399 (405)
T 3k7y_A 390 NVDYIADKIC 399 (405)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5566555554
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-25 Score=203.08 Aligned_cols=254 Identities=17% Similarity=0.091 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 119 (367)
....++++.++++++.+ +.+++ +||++|+..++.+++.+||+|++..+.|++.. +...++..|+++..++.+
T Consensus 52 ~~~~~l~~~la~~~~~~--~~i~~-~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--- 125 (386)
T 1cs1_A 52 PTRDVVQRALAELEGGA--GAVLT-NTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG--- 125 (386)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEE-SSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTT---
T ss_pred ccHHHHHHHHHHHhCCC--cEEEe-CCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCC---
Confidence 56789999999999986 44555 66699999999988899999999999888743 334456789999988864
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecC
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS 199 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~ 199 (367)
|+++++++++ +++++|++++++||||.+.|+++|.++|++ +|+++|+|++|+.+....+. ..++|+++.|+
T Consensus 126 --d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~--~~~~li~De~~~~~~~~~~~-~~~~di~~~s~ 196 (386)
T 1cs1_A 126 --DEQALRAALA----EKPKLVLVESPSNPLLRVVDIAKICHLARE--VGAVSVVDNTFLSPALQNPL-ALGADLVLHSC 196 (386)
T ss_dssp --CHHHHHHHHH----TCCSEEEEECSCTTTCCCCCHHHHHHHHHH--TTCEEEEECTTTCTTTCCGG-GGTCSEEEEET
T ss_pred --CHHHHHHhhc----cCCcEEEEeCCCCCCCcccCHHHHHHHHHH--cCCEEEEECCCcccccCCcc-ccCceEEEEcC
Confidence 8999999998 467999999999999999999999999999 99999999999877654333 35789999999
Q ss_pred CCcccCCCcc--eeeeeCH-HHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 200 QKALSLPTGM--GIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 200 ~K~~~g~~g~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
||+++++.+. |++++++ ++++++.... .. .+ ++.+....++...+++. +....+
T Consensus 197 sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~------------~~--~~----~~~~~~~~~~~~~~l~~-----~~~~~~ 253 (386)
T 1cs1_A 197 TKYLNGHSDVVAGVVIAKDPDVVTELAWWA------------NN--IG----VTGGAFDSYLLLRGLRT-----LVPRME 253 (386)
T ss_dssp TTTTTCSSCCCCEEEEESSHHHHHHHHHHH------------HH--HT----CBCCHHHHHHHHHHHTT-----HHHHHH
T ss_pred cccccCCCCceeEEEEeCcHHHHHHHHHHH------------Hh--cC----CCCCHHHHHHHHhcccH-----HHHHHH
Confidence 9999777653 9999986 7777665321 00 01 12444332333333332 445566
Q ss_pred HHHHHHHHHHHHHHHc-CCccc-cCC------------CccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEcc
Q 017726 277 RHRRLGKATRLAVEAW-GLKNC-TQK------------EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGL 336 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~~~~-~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~ 336 (367)
+..++.+.+.+.|+++ .+... .+. .....+.++.|.++ + ..+++.+.|. +.||.++.
T Consensus 254 ~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~-~~gi~~~~ 324 (386)
T 1cs1_A 254 LAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD-G-DEQTLRRFLG-GLSLFTLA 324 (386)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES-S-CHHHHHHHHH-TCSSSEEB
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEEC-C-CHHHHHHHHH-hCCcceEc
Confidence 7777888888888775 22111 110 00123457778874 3 2567777775 56998874
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-26 Score=208.53 Aligned_cols=285 Identities=15% Similarity=0.133 Sum_probs=201.0
Q ss_pred HHHHHHHccCCC------CCCCCcH-HHHHHHHHHHHHHHhcCCCCceEEe--cCChhHHHHHHHHccCCCCCeEEEEe-
Q 017726 22 DQVIRAMNRNNE------DYRSPAV-PALTKTLLEDIKKIFKTTSGTPFLI--PTTGTGAWESALTNTLSPGDRIISFL- 91 (367)
Q Consensus 22 ~~v~~a~~~~~~------~~~~~~~-~~~~~~~~~~la~~~~~~~~~~v~~--~~ggt~al~~~~~~~~~~gd~vl~~~- 91 (367)
.+|++++.+... ...++.+ .....++++.+++++|.+. .+++ ++||++|+..++.++++|||+|++.+
T Consensus 46 ~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~g~e~--alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~ 123 (427)
T 3i16_A 46 LKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNTES--ALVRPHFVNGTHALGAALFGNLRPGNTMLSVCG 123 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCSE--EEEETTCCSHHHHHHHHHHHHCCTTCEEEESSS
T ss_pred HHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHhCCcc--eEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 457888876321 1111211 1347889999999999875 3453 78999999999999999999999998
Q ss_pred CCcchHH-HH--------HHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEe----cCCCccccccHHH
Q 017726 92 IGQFSLL-WI--------DQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVH----NETATGVTNNLSK 158 (367)
Q Consensus 92 ~~~~~~~-~~--------~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~----~~n~tG~~~~~~~ 158 (367)
+.|.+.. .. ..++..|++++.++.++++.+|++++++++++. +++|+|++++ |+||+|.+.|+++
T Consensus 124 ~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~--~~tklV~i~~s~~~p~nptg~i~dl~~ 201 (427)
T 3i16_A 124 EPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKED--ESITLVHIQRSTGYGWRRALLIEDIKS 201 (427)
T ss_dssp SCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTC--TTEEEEEEECSCCSSSSCCCCHHHHHH
T ss_pred CccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCC--CCCEEEEEEcCCCCCCCCcccHHHHHH
Confidence 7776654 22 334567999999999888889999999999842 2679999999 9999999999999
Q ss_pred HHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCC--CcceeeeeCHHHHHHhccCCCCceeechHH
Q 017726 159 VRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLP--TGMGIVCASPKALEASKTAKSVRVFFDWKD 236 (367)
Q Consensus 159 i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~--~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (367)
|.++|++.++|+++++|++|+.+.........++|++++|+||+++|+ +..|++++++++++++........
T Consensus 202 i~~la~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~------ 275 (427)
T 3i16_A 202 IVDCVKNIRKDIICFVDNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPG------ 275 (427)
T ss_dssp HHHHHHHHCTTSEEEEECTTTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTT------
T ss_pred HHHHHHHhCCCCEEEEECCCccccccCCccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCc------
Confidence 999999866799999999998766333344457999999999999762 224999999999988875211000
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCC
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH 316 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 316 (367)
.+. ...+... +...+++.+.. +..++++..+++.++.+.|+++|+.+.+.....+...++.|.+.+.
T Consensus 276 ------~g~--~~~~~~~---~a~~~l~gl~~--~~~r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~~i~~i~l~~~ 342 (427)
T 3i16_A 276 ------IGG--ECGSTFG---VVRSMYQGLFL--APHISMEALKGAILCSRIMELAGFEVMPKYDEKRSDIIQSIKFNDK 342 (427)
T ss_dssp ------TGG--GCCCCTT---CHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCEEEECSSH
T ss_pred ------cCc--cCCccHH---HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCCccEEEEEEECCH
Confidence 010 0011111 01222222222 3567788999999999999999887754322112333777887433
Q ss_pred CCHHHHHHHHHhh
Q 017726 317 INSSEIVRRAWQR 329 (367)
Q Consensus 317 ~~~~~l~~~L~~~ 329 (367)
....++++.|...
T Consensus 343 ~~~~~f~~~l~~~ 355 (427)
T 3i16_A 343 DKLIEFCKGIQTG 355 (427)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc
Confidence 3345688888643
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-25 Score=207.25 Aligned_cols=294 Identities=14% Similarity=0.114 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.....++++.+++++|.+. .++++||++|+..++.+++.+||+|++..+.|++.. +...++..|++++.++.+
T Consensus 81 ~p~~~~le~~lA~l~g~~~---~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-- 155 (430)
T 3ri6_A 81 NPTVEDLEQRLKNLTGALG---VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-- 155 (430)
T ss_dssp CHHHHHHHHHHHHHHTCSE---EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT--
T ss_pred CHHHHHHHHHHHHHHCCCc---EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC--
Confidence 3667899999999999754 466678899999999999999999999999887764 333677889999999876
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ +++++|++++|+||+|.+.|+++|.++|++ +|+++|+|++++.+.. .+....++|+++.|
T Consensus 156 ---d~~~l~~ai~----~~t~~v~~e~p~NptG~~~dl~~i~~la~~--~g~~livD~a~~~~~~-~~~~~~g~div~~S 225 (430)
T 3ri6_A 156 ---DSLAVEHACD----ETTKLLFLETISNPQLQVADLEALSKVVHA--KGIPLVVDTTMTPPYL-LEAKRLGVDIEVLS 225 (430)
T ss_dssp ---CHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHT--TTCCEEEECTTSCTTT-CCGGGGTCSEEEEE
T ss_pred ---CHHHHHHhhC----CCCeEEEEECCCCCCCeecCHHHHHHHHHH--cCCEEEEECCCccccc-CChHHcCCEEEEEC
Confidence 8999999997 477999999999999999999999999999 9999999999987665 34445689999999
Q ss_pred CCCcccCCC-c-ceeeeeCHH--HHHHhccCCCCcee-----ech-HHHHH--HhhcCCccCCCCcHHHHHHHHHHHHHH
Q 017726 199 SQKALSLPT-G-MGIVCASPK--ALEASKTAKSVRVF-----FDW-KDYIK--FYNLGTFWPYTPSIQLLYGLRAALDLI 266 (367)
Q Consensus 199 ~~K~~~g~~-g-~g~~~~~~~--~~~~~~~~~~~~~~-----~~~-~~~~~--~~~~~~~~~~~~~~~~~~al~~al~~~ 266 (367)
++|+++|+. + .|+++.+.+ +.. ..+..... ..+ ..... ....|. +++....+.+...++.
T Consensus 226 ~sK~l~g~g~~~gG~vv~~~~~~~~~---~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~----~~~~~~a~l~l~~l~~- 297 (430)
T 3ri6_A 226 STKFISGGGTSVGGVLIDHGLFEWKS---LPSLAPYYAKAGPMAFLYKARKEVFQNLGP----SLSPHNAYLQSLGLET- 297 (430)
T ss_dssp CCCEEETTEEECCEEEEECSCSCGGG---STTTHHHHHHHGGGHHHHHHHHTHHHHHCC----CCCHHHHHHHHHHHHH-
T ss_pred CcccccCCCCceEEEEEECChHHhhh---ccchhhhhhhhchhhHHHHHHHHHHHhcCC----CCCHHHHHHHHhhhhh-
Confidence 999997652 1 266663322 200 00000000 000 00000 001121 2333222222222222
Q ss_pred HHhChHHHHHHHHHHHHHHHHHHHHc-CCc-cccCC-Cc-----------cCCCceEEEEcCCCCCHHHHHHHHHhhCCe
Q 017726 267 FEEGLENVIERHRRLGKATRLAVEAW-GLK-NCTQK-EE-----------WFSDTVTAVIVPSHINSSEIVRRAWQRYNL 332 (367)
Q Consensus 267 ~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv 332 (367)
+..+.++..+++..+.+.|++. ++. +..|. +. ..++++++|.+++..+..+|.+.|+ ..++
T Consensus 298 ----l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~~~~~~~~~l~-~~~~ 372 (430)
T 3ri6_A 298 ----MALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEASYRFMDALK-LIRR 372 (430)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHHCS-SSEE
T ss_pred ----HHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHHHHHHHHHhCC-ccee
Confidence 4556778889999999999886 554 33232 11 0133389999852223445555553 3455
Q ss_pred EEccCCC-----------------------CCCCcEEEEeecCCCCHHHHHHhh
Q 017726 333 SLGLGLN-----------------------KVAGKVFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 333 ~v~~g~~-----------------------~~~~~~iRi~~~~~~~~~~~~~~~ 363 (367)
.+..|.. ...++.||+| .+.++.+|+...+
T Consensus 373 ~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRls-vG~E~~~dl~~dl 425 (430)
T 3ri6_A 373 ATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLS-VGIEEIEDLKEDI 425 (430)
T ss_dssp CSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEE-CCSSCHHHHHHHH
T ss_pred cCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEE-eccCCHHHHHHHH
Confidence 5544421 1234679999 4777777766554
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=206.10 Aligned_cols=284 Identities=15% Similarity=0.091 Sum_probs=199.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.....++++.+++++|.+ .+++++||++|+..++.+++.+||+|++..+.|++.. +...++..|+++..++.+
T Consensus 65 ~~~~~~l~~~la~~~g~~---~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-- 139 (392)
T 3qhx_A 65 NPTRTALEAALAAVEDAA---FGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALA-- 139 (392)
T ss_dssp CHHHHHHHHHHHHHTTCS---EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTT--
T ss_pred ChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCC--
Confidence 366789999999999976 3788899999999999988999999999999888754 334446789999999875
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ +++++|++++|+||+|.+.|+++|.++|++ +|+++|+|++++.+.. ......++|+++.|
T Consensus 140 ---d~~~l~~~i~----~~~~~v~~~~~~nptG~~~~l~~i~~la~~--~g~~li~D~~~~~~~~-~~~~~~~~di~~~S 209 (392)
T 3qhx_A 140 ---DLDAVRAAIR----PTTRLIWVETPTNPLLSIADIAGIAQLGAD--SSAKVLVDNTFASPAL-QQPLSLGADVVLHS 209 (392)
T ss_dssp ---CHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHH--HTCEEEEECTTTCTTT-CCGGGGTCSEEEEE
T ss_pred ---CHHHHHHhhC----CCCeEEEEECCCCCCcEEecHHHHHHHHHH--cCCEEEEECCCccccc-CChHHhCCcEEEEc
Confidence 8999999998 477999999999999999999999999999 9999999999976532 23334579999999
Q ss_pred CCCcccCCCc--ceeeeeC-HHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHH
Q 017726 199 SQKALSLPTG--MGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~ 275 (367)
++|+++++.+ +|+++.+ +++.+.+.... ...+ ..++......+...++. +....
T Consensus 210 ~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~--------------~~~g----~~~~~~~~~~~~~~l~~-----l~~~~ 266 (392)
T 3qhx_A 210 TTKYIGGHSDVVGGALVTNDEELDQSFAFLQ--------------NGAG----AVPGPFDAYLTMRGLKT-----LVLRM 266 (392)
T ss_dssp TTTTTTCSSCCCCEEEEESCHHHHHHHHHHH--------------HHHC----CCCCHHHHHHHHHHHTT-----HHHHH
T ss_pred CccccCCCCCceEEEEEECcHHHHHHHHHHH--------------HhcC----CCCCHHHHHHHHhhhhH-----HHHHH
Confidence 9999975432 6999887 57766654310 0011 12343322222222222 45566
Q ss_pred HHHHHHHHHHHHHHHHc-CCccc-cCC-Cc-----------cCCCceEEEEcCCC-CCHHHHHHHHHhhCCeEEccCCC-
Q 017726 276 ERHRRLGKATRLAVEAW-GLKNC-TQK-EE-----------WFSDTVTAVIVPSH-INSSEIVRRAWQRYNLSLGLGLN- 339 (367)
Q Consensus 276 ~~~~~~~~~l~~~L~~~-g~~~~-~~~-~~-----------~~~~~~~~~~~~~~-~~~~~l~~~L~~~~gv~v~~g~~- 339 (367)
++..++++.+.+.|++. ++..+ .+. +. ...+.+++|.++.+ ...+.+.+.|. ..++.+..|..
T Consensus 267 ~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~-~~~~~~s~G~~~ 345 (392)
T 3qhx_A 267 QRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTN-IFILAESLGSVE 345 (392)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCS-SSEECSCCCCSS
T ss_pred HHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCC-CceECCCCCCCC
Confidence 77888888999999886 43222 121 00 11255788988532 33456666663 44666655432
Q ss_pred -----C--------------CCCcEEEEeecCCCCHHHHHHhhh
Q 017726 340 -----K--------------VAGKVFRIGHLGHLNEVMFNFQLL 364 (367)
Q Consensus 340 -----~--------------~~~~~iRi~~~~~~~~~~~~~~~l 364 (367)
+ ..++.||+|+ +..+.+|+...+.
T Consensus 346 sl~~~~~~~~~~~~~~~~~g~~~~~iRlSv-g~e~~~~~i~~l~ 388 (392)
T 3qhx_A 346 SLIEHPSAMTHASTAGSQLEVPDDLVRLSV-GIEDVADLLDDLK 388 (392)
T ss_dssp CEEECGGGTSCGGGBTTBCCCCTTEEEEEC-CSSCHHHHHHHHH
T ss_pred ceeeCcccccccccCHHHcCCCCCeEEEEe-ccCCHHHHHHHHH
Confidence 1 2346799994 6666666655543
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-25 Score=207.65 Aligned_cols=315 Identities=13% Similarity=0.070 Sum_probs=207.8
Q ss_pred ChHHHHHHHccCCCC--C--CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC---C----CCCeEE
Q 017726 20 IPDQVIRAMNRNNED--Y--RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL---S----PGDRII 88 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~--~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~---~----~gd~vl 88 (367)
.++++.+++.+.... + ..........++++.++++++.+. +++++++||++|+..++.++. . ||++|+
T Consensus 60 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi 138 (429)
T 1s0a_A 60 NHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPL-ECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFL 138 (429)
T ss_dssp SCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTC-CEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEE
T ss_pred CCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCC-CEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEE
Confidence 467778877764321 1 111122456788999999998755 459999999999999887542 2 689999
Q ss_pred EEeCCcchHHHHHHHHHhC-------------CceEEEeCCC-----C-CCCCHHHHHHHHhccCCCCccEEEEEec-CC
Q 017726 89 SFLIGQFSLLWIDQQQRLN-------------FNVDVVESDW-----G-EGAKLDVLASKLAADTAHTIKAICIVHN-ET 148 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~-----~-~~~d~e~l~~~i~~~~~~~~~lv~~~~~-~n 148 (367)
+.++.|++.... .....+ ..+..++.+. . +.+|++++++++++.. +++++|+++++ +|
T Consensus 139 ~~~~~yh~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~vi~~p~~~n 216 (429)
T 1s0a_A 139 TFRNGYHGDTFG-AMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHR-HEIAAVIIEPIVQG 216 (429)
T ss_dssp EETTCCCCSSHH-HHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHT-TTEEEEEECSSEEC
T ss_pred EECCCCCCCchh-hhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCC-CCEEEEEEeecccC
Confidence 999988765321 111111 1345565542 2 2579999999997532 35667766665 79
Q ss_pred Ccccccc----HHHHHHHHHhcCCCcEEEEeeeec-cCce----eeccccccceEEEecCCCcccCC-CcceeeeeCHHH
Q 017726 149 ATGVTNN----LSKVRKLLDEYRHPALFLVDGVSS-ICAI----DFRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKA 218 (367)
Q Consensus 149 ~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~-~~~~----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~ 218 (367)
|||.+.+ +++|.++|++ +|+++|+|++|+ ++.. .++......|+++ ++|+++++ .++|++++++++
T Consensus 217 ~tG~~~~~~~~l~~i~~l~~~--~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~t--~sK~l~~G~~~iG~~~~~~~~ 292 (429)
T 1s0a_A 217 AGGMRMYHPEWLKRIRKICDR--EGILLIADEIATGFGRTGKLFACEHAEIAPDILC--LGKALTGGTMTLSATLTTREV 292 (429)
T ss_dssp TTTCEEBCTHHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGTSSSCCEEEEECHHH
T ss_pred CCCcccCCHHHHHHHHHHHHH--cCCEEEEeehhhCCcccchHHHhhhcCCCCCEEE--ecccccCCCccceEEEeCHHH
Confidence 9998777 9999999999 999999999997 3211 1222233467775 46999876 678999999998
Q ss_pred HHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccc
Q 017726 219 LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNC 297 (367)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 297 (367)
++.+....... +..+ ..++.+...+++..++++.+.+. ...++..++++++.+.|+++ +++.+
T Consensus 293 ~~~l~~~~~~~-----------~~~~--~t~~~n~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~ 356 (429)
T 1s0a_A 293 AETISNGEAGC-----------FMHG--PTFMGNPLACAAANASLAILESG---DWQQQVADIEVQLREQLAPARDAEMV 356 (429)
T ss_dssp HHHHHTSTTSS-----------CSCC--CTTTTCHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHGGGGGCTTE
T ss_pred HHHhhcCCCcc-----------cccC--CCCCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 88776421000 0001 13456777777888888877654 45667888899999999875 22211
Q ss_pred cCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHH--HHHHhhhh
Q 017726 298 TQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV--MFNFQLLF 365 (367)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~--~~~~~~l~ 365 (367)
.... ..+.++++.+++..+..++.+.|.+ +||.+.+. ++++||++....+++ +...+.|+
T Consensus 357 ~~~~--~~g~~~~~~~~~~~~~~~l~~~l~~-~Gi~v~~~-----~~~iRis~~~~~t~e~i~~~~~~l~ 418 (429)
T 1s0a_A 357 ADVR--VLGAIGVVETTHPVNMAALQKFFVE-QGVWIRPF-----GKLIYLMPPYIILPQQLQRLTAAVN 418 (429)
T ss_dssp EEEE--EETTEEEEEESSCBCHHHHHHHHHH-TTEECCCB-----TTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred EEEE--EeeEEEEEEECCcccHHHHHHHHHH-CCCEEecc-----CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 1000 1234677888655677889999975 59999863 368999965444444 33344443
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=216.11 Aligned_cols=296 Identities=13% Similarity=0.090 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC----CCCe---EEEEeCCcchHHHHHHHHHhCCceEEEe
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS----PGDR---IISFLIGQFSLLWIDQQQRLNFNVDVVE 114 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~----~gd~---vl~~~~~~~~~~~~~~~~~~g~~~~~v~ 114 (367)
....++++.++++++.+ ++++|+||++|+..++.+++. +||. |+++ ..|+.. +.......|.+++.++
T Consensus 76 ~~~~~l~~~la~~~~~~---~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~-~~~~~~-~~~~~~~~g~~~~~~~ 150 (467)
T 1ax4_A 76 RNYYDLKDKAKELFNYD---YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFIS-NFHFDT-TAAHVELNGCKAINIV 150 (467)
T ss_dssp HHHHHHHHHHHHHHCCC---EEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEE-SSCCHH-HHHHHHHTTCEEEECB
T ss_pred ccHHHHHHHHHHHcCCC---cEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEe-ccccch-hhHHHhccCCceeccc
Confidence 56779999999999863 599999999999999998887 9998 8888 545554 2344566788887765
Q ss_pred CC----------CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCc-ccccc---HHHHHHHHHhcCCCcEEEEeeeecc
Q 017726 115 SD----------WGEGAKLDVLASKLAADTAHTIKAICIVHNETAT-GVTNN---LSKVRKLLDEYRHPALFLVDGVSSI 180 (367)
Q Consensus 115 ~~----------~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~t-G~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~ 180 (367)
.. .++.+|+++|++++++...+++++|++++++||+ |.+++ +++|.++|++ ||+++|+|+++..
T Consensus 151 ~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~--~gi~li~De~~~~ 228 (467)
T 1ax4_A 151 TEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQ--HGIFVVMDSARFC 228 (467)
T ss_dssp CGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHH--HTCCEEEECTTHH
T ss_pred ccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHH--cCCEEEEEchhhh
Confidence 42 1346899999999985311257999999999999 78765 6789999999 9999999998654
Q ss_pred -----------Cceeecccc------ccceEEEecCCCcccCCCcceeeeeC-H-HHHHHhccCCCCceeechHHHHHHh
Q 017726 181 -----------CAIDFRMDE------WGIDVALTGSQKALSLPTGMGIVCAS-P-KALEASKTAKSVRVFFDWKDYIKFY 241 (367)
Q Consensus 181 -----------~~~~~~~~~------~~~d~~~~s~~K~~~g~~g~g~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (367)
+....+... ..+|++++|+||+++.+.| |+++.+ + ++++++.... ..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~d~~~l~~~~~~~~------------~~~ 295 (467)
T 1ax4_A 229 ENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG-GLVAIRDNEEIFTLARQRC------------VPM 295 (467)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC-EEEEESSCHHHHHHHHHHH------------HHH
T ss_pred hcchhccccccccCCCchhhhhhhhccccceEEEeccccCCCCcc-eEEEeCCHHHHHHHHHhhc------------ccc
Confidence 111122111 2368899999999864435 777777 6 7776654210 001
Q ss_pred hcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEE-------cC
Q 017726 242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVI-------VP 314 (367)
Q Consensus 242 ~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-------~~ 314 (367)
.+.......+...+.++..++....+ ++..++..++++++.+.|++.|+++..+ ..+..+++. ++
T Consensus 296 -~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 367 (467)
T 1ax4_A 296 -EGFVTYGGLAGRDMAAMVQGLEEGTE---EEYLHYRIGQVKYLGDRLREAGIPIQYP----TGGHAVFVDCKKLVPQIP 367 (467)
T ss_dssp -TCSTTTTTCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHTTCCBCSS----CCSSEEEEESTTTCTTSC
T ss_pred -ccccccCCccchHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHhCCCCcccC----CCceEEEEehhhhccccc
Confidence 11111223444333444434443221 1233444577889999998877777654 345567777 32
Q ss_pred C-CCCHHHHHHHHHhhCCeEEcc-CCC---C---------CCCcEEEEeecCC-CCH--HHHHHhhhh
Q 017726 315 S-HINSSEIVRRAWQRYNLSLGL-GLN---K---------VAGKVFRIGHLGH-LNE--VMFNFQLLF 365 (367)
Q Consensus 315 ~-~~~~~~l~~~L~~~~gv~v~~-g~~---~---------~~~~~iRi~~~~~-~~~--~~~~~~~l~ 365 (367)
. +.+..+++++|.+++||.+.+ |.. . ...+++|+++... .+. .+...+.|.
T Consensus 368 ~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~ 435 (467)
T 1ax4_A 368 GDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALI 435 (467)
T ss_dssp GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHH
Confidence 1 234678999984455999987 421 1 0126899997633 443 344444444
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.94 E-value=5.7e-25 Score=202.07 Aligned_cols=251 Identities=14% Similarity=0.136 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 119 (367)
....++++.+++++|.+ +.+++ ++|++|+..++. ++.+||+|+++.+.|.+.. +...++..|++++.++.+
T Consensus 67 p~~~~l~~~la~~~g~~--~~i~~-~sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~--- 139 (403)
T 3cog_A 67 PTRNCLEKAVAALDGAK--YCLAF-ASGLAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCS--- 139 (403)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEE-SCHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTT---
T ss_pred chHHHHHHHHHHHhCCC--cEEEE-CCHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCC---
Confidence 55789999999999986 34555 566899999998 8899999999999888753 334456789999999875
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCC-cEEEEeeeeccCceeeccccccceEEEec
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHP-ALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~-~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ +++++|++++|+||||.+.|+++|.++|++ +| +++++|++|+.+....+.. .++|+++.|
T Consensus 140 --d~~~l~~~i~----~~t~~v~~~~p~nptG~~~~l~~i~~la~~--~g~~~livD~~~~~~~~~~~~~-~~~div~~S 210 (403)
T 3cog_A 140 --KIKLLEAAIT----PETKLVWIETPTNPTQKVIDIEGCAHIVHK--HGDIILVVDNTFMSPYFQRPLA-LGADISMYS 210 (403)
T ss_dssp --SHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHTS--SSCCEEEEECTTTCTTTCCTTT-TTCSEEEEE
T ss_pred --CHHHHHHhcC----cCCeEEEEECCCCCCCeeeCHHHHHHHHHH--cCCCEEEEECCCcccccCCccc-cCCeEEEEc
Confidence 7999999987 477999999999999999999999999999 99 9999999998765322332 579999999
Q ss_pred CCCcccCCCc--ceeeeeC-HHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHH
Q 017726 199 SQKALSLPTG--MGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~ 275 (367)
++|+++|+.+ +|+++++ +++++++..... ..+ .+.+.....+...+++. +..+.
T Consensus 211 ~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~--------------~~g----~~~~~~~~~~~~~~l~~-----l~~r~ 267 (403)
T 3cog_A 211 ATKYMNGHSDVVMGLVSVNCESLHNRLRFLQN--------------SLG----AVPSPIDCYLCNRGLKT-----LHVRM 267 (403)
T ss_dssp TTTTTTCSSCCCCEEEEECCHHHHHHHHHHHH--------------HHC----CCCCHHHHHHHHHHHTT-----HHHHH
T ss_pred ChhhccCCCCCeEEEEEECcHHHHHHHHHHHH--------------hcC----CCCCHHHHHHHHhhhhH-----HHHHH
Confidence 9999987765 4999985 777776653210 011 12444333333334433 34445
Q ss_pred HHHHHHHHHHHHHHHHc---------------CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEc
Q 017726 276 ERHRRLGKATRLAVEAW---------------GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLG 335 (367)
Q Consensus 276 ~~~~~~~~~l~~~L~~~---------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~ 335 (367)
++..+++..+.+.|++. ++.+..++.. ..+.++.|.++ + ..+++.+.| ++.+|.++
T Consensus 268 ~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~-~~g~~~~~~l~-~-~~~~~~~~l-~~~~i~~~ 338 (403)
T 3cog_A 268 EKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCT-GCTGMVTFYIK-G-TLQHAEIFL-KNLKLFTL 338 (403)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS-CCCSEEEEEES-S-CHHHHHHHH-HHCSSSEE
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCC-CCceEEEEEec-C-CHHHHHHHH-HhCCcceE
Confidence 56666777777777654 2222221111 12457777774 2 234455555 45687553
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-26 Score=208.26 Aligned_cols=292 Identities=15% Similarity=0.101 Sum_probs=201.7
Q ss_pred ChHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC------C-CCeEE
Q 017726 20 IPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS------P-GDRII 88 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~------~-gd~vl 88 (367)
.++.+.+++.+.... ...+ ......++++.+++++|. +++++++||++|+..++.++.. + ++.|+
T Consensus 57 ~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~g~---~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi 132 (397)
T 2ord_A 57 SHPRLVEAIKDQAEKLIHCSNLF-WNRPQMELAELLSKNTFG---GKVFFANTGTEANEAAIKIARKYGKKKSEKKYRIL 132 (397)
T ss_dssp TCHHHHHHHHHHHHHCSCCCTTS-EEHHHHHHHHHHHHTTTS---CEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHHHHhcccCcccc-CCHHHHHHHHHHHHhcCC---CeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEE
Confidence 356677777664321 1112 236678999999999983 3599999999999999887642 4 47899
Q ss_pred EEeCCcchHHHHHHHHHhCCc------------eEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc-cc-
Q 017726 89 SFLIGQFSLLWIDQQQRLNFN------------VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV-TN- 154 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~-~~- 154 (367)
+.++.|++... ..++..|.+ +..++.+ |+++++++++ +++++|++++++||||. ++
T Consensus 133 ~~~~~yh~~~~-~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~ 202 (397)
T 2ord_A 133 SAHNSFHGRTL-GSLTATGQPKYQKPFEPLVPGFEYFEFN-----NVEDLRRKMS----EDVCAVFLEPIQGESGIVPAT 202 (397)
T ss_dssp EEBTCCCCSSH-HHHHHSBCHHHHGGGCSCCTTEEEECTT-----CHHHHHHHCC----TTEEEEEECSEECTTTCEECC
T ss_pred EEcCCcCCCch-hhhhccCChhhccccCCCCCCeeEecCC-----CHHHHHHHhh----cCeEEEEEecccCCCCcccCC
Confidence 99887766432 234445654 6666653 8999999987 47899999999999998 44
Q ss_pred --cHHHHHHHHHhcCCCcEEEEeeeeccCce---eecccc--ccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCC
Q 017726 155 --NLSKVRKLLDEYRHPALFLVDGVSSICAI---DFRMDE--WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS 227 (367)
Q Consensus 155 --~~~~i~~~~~~~~~~~~vi~D~~~~~~~~---~~~~~~--~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~ 227 (367)
++++|.++|++ +|+++|+|++|+.... .+.... ...|++ +++|+++++.++|+++++++++ .+....
T Consensus 203 ~~~l~~l~~l~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~r~G~~~~~~~~~-~l~~~~- 276 (397)
T 2ord_A 203 KEFLEEARKLCDE--YDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVL--TTAKGLGGGVPIGAVIVNERAN-VLEPGD- 276 (397)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEEEEECSTTC-CCCTTS-
T ss_pred HHHHHHHHHHHHH--cCCEEEEEecccCCccCccchhhhhhCCCCCee--eeccccCCCcCeEEEEEchHhc-ccCCCC-
Confidence 58889999999 9999999999973221 122121 236776 4479998655689999998865 443210
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCC
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFS 305 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~ 305 (367)
.+. .++.+...+.++.++++.+.+ ++..++++++++++.+.|+++ +++...... ..
T Consensus 277 ---------------~~~--~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--~~ 334 (397)
T 2ord_A 277 ---------------HGT--TFGGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVR--GM 334 (397)
T ss_dssp ---------------SCC--SSTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE--EE
T ss_pred ---------------cCC--CCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEE--EE
Confidence 011 334666666777777776554 356778889999999999886 454322111 12
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHH
Q 017726 306 DTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 306 ~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~ 358 (367)
+.++++.+++..+..++.+.|.+ +||.+.++. ++++|+++....++++
T Consensus 335 g~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~----~~~iRis~~~~~~~e~ 382 (397)
T 2ord_A 335 GLMIGIQFREEVSNREVATKCFE-NKLLVVPAG----NNTIRFLPPLTVEYGE 382 (397)
T ss_dssp TTEEEEEECTTSCHHHHHHHHHH-TTEECEEET----TTEEEECCCTTCCHHH
T ss_pred eEEEEEEECChHHHHHHHHHHHH-CCCEEccCC----CCEEEEECCcCCCHHH
Confidence 35677888655568899999976 599998762 4689999654444443
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=218.07 Aligned_cols=281 Identities=14% Similarity=0.060 Sum_probs=175.5
Q ss_pred CceEEecCChhHHHHHHHHc-----cCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhc
Q 017726 60 GTPFLIPTTGTGAWESALTN-----TLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAA 132 (367)
Q Consensus 60 ~~~v~~~~ggt~al~~~~~~-----~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~ 132 (367)
+++|++|+|+++++..++.+ ++.+||.|++++|.|+++.........|.+++.++.+++ +.+|++++++++.
T Consensus 165 ~~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~- 243 (546)
T 2zy4_A 165 SVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKD- 243 (546)
T ss_dssp GEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS-
T ss_pred cceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC-
Confidence 46799999999999998876 578999999999988775421112334788888887643 4689999988765
Q ss_pred cCCCCccEEEEEecCCCcccccc---HHHHHHHH--HhcCCCcEEEEeeeeccCcee-eccc--cccceEEEecCCCccc
Q 017726 133 DTAHTIKAICIVHNETATGVTNN---LSKVRKLL--DEYRHPALFLVDGVSSICAID-FRMD--EWGIDVALTGSQKALS 204 (367)
Q Consensus 133 ~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~--~~~~~~~~vi~D~~~~~~~~~-~~~~--~~~~d~~~~s~~K~~~ 204 (367)
+++++|++++|+||||.+++ +++|.++| ++ +|++||+|++|+..... .++. ..+.++++.|+||+++
T Consensus 244 ---~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~--~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g 318 (546)
T 2zy4_A 244 ---PAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHR--PDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFG 318 (546)
T ss_dssp ---TTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTC--TTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTT
T ss_pred ---CCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhcc--CCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccC
Confidence 57899999999999999997 45577777 55 89999999999854321 1111 1246899999999984
Q ss_pred CCCc--ceeeeeCHH-HHHHhccCCC----------------CceeechHHHH-HHhh-cCCccCCCCcHHHHHHH-HHH
Q 017726 205 LPTG--MGIVCASPK-ALEASKTAKS----------------VRVFFDWKDYI-KFYN-LGTFWPYTPSIQLLYGL-RAA 262 (367)
Q Consensus 205 g~~g--~g~~~~~~~-~~~~~~~~~~----------------~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~al-~~a 262 (367)
.+| +|+++++++ +++++..... ..+...+.+.. .... ...+...+.+.....++ ..+
T Consensus 319 -~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a 397 (546)
T 2zy4_A 319 -ATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFS 397 (546)
T ss_dssp -CGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHH
T ss_pred -CCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHH
Confidence 555 699998875 7666532110 00001000000 0000 00000112333222221 112
Q ss_pred H-HHHHHhC--hHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC----------------CCCHHHHH
Q 017726 263 L-DLIFEEG--LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS----------------HINSSEIV 323 (367)
Q Consensus 263 l-~~~~~~g--~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~ 323 (367)
+ .++.+.. .+++++.++++++.+.+.|. .++.+..+ .++++++++++. +.+..+++
T Consensus 398 ~~all~~~~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~~----~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l 472 (546)
T 2zy4_A 398 LFALMDEADEYKHTLKQLIRRRETTLYRELG-MPPLRDEN----AVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDML 472 (546)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHGGGT-SSCCCCTT----BCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHhcC-CCcccCCC----CeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHH
Confidence 2 2222211 56677777888888877774 44433333 466677888631 12334444
Q ss_pred HHHHhhCCeEEccCCCCC-CCcEEEEeecC
Q 017726 324 RRAWQRYNLSLGLGLNKV-AGKVFRIGHLG 352 (367)
Q Consensus 324 ~~L~~~~gv~v~~g~~~~-~~~~iRi~~~~ 352 (367)
..+.+++||.+.||..+. .++++||++..
T Consensus 473 ~~ll~~~gV~v~pG~~F~~~~~~iRis~~~ 502 (546)
T 2zy4_A 473 FRIADETGIVLLPGRGFGSNRPSGRASLAN 502 (546)
T ss_dssp HHHHHHHSCCCEESSCTTCSSCEEEEESSS
T ss_pred HHHHHHCCEEEeCccccCCCCCeEEEEecc
Confidence 444456699999986543 34679999754
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-25 Score=202.94 Aligned_cols=292 Identities=13% Similarity=0.085 Sum_probs=199.6
Q ss_pred hHHHHHHHccCCCC--CC-CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC-------CC-CeEEE
Q 017726 21 PDQVIRAMNRNNED--YR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS-------PG-DRIIS 89 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~-~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~-------~g-d~vl~ 89 (367)
++.+.+++.+.... +. .........+++++++++++.+ ++++++||++|+..++.++.. +| |.|++
T Consensus 57 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~---~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~ 133 (406)
T 4adb_A 57 HPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFAD---RVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVA 133 (406)
T ss_dssp CHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHSSCS---EEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEE
T ss_pred CHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhCCCC---eEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 56667766654322 11 1112356789999999999754 599999999999999987653 55 89999
Q ss_pred EeCCcchHHHHHHHHHhC------------CceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc---
Q 017726 90 FLIGQFSLLWIDQQQRLN------------FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN--- 154 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~--- 154 (367)
.++.|++... ......+ .++..++. .|+++++++++ +++++|+++ |+||+|.++
T Consensus 134 ~~~~y~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~----~~~~~v~~~-p~np~g~~~~~~ 202 (406)
T 4adb_A 134 FKNAFHGRTL-FTVSAGGQPAYSQDFAPLPADIRHAAY-----NDINSASALID----DSTCAVIVE-PIQGEGGVVPAS 202 (406)
T ss_dssp ETTCCCCSSH-HHHHHSSCGGGTGGGCSCCSSEEEECT-----TCHHHHHTTCS----TTEEEEEEC-SEETTTTSEECC
T ss_pred ECCCcCCCcH-HHhhccCCccccccCCCCCCCceEeCC-----CcHHHHHHHhc----CCeEEEEEe-CCcCCCCCccCC
Confidence 9998887642 1222222 23444443 37999999887 477999988 899999765
Q ss_pred --cHHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCC
Q 017726 155 --NLSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS 227 (367)
Q Consensus 155 --~~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~ 227 (367)
++++|.++|++ +|+++|+|++|+.... ..+......|++++ +|+++++.++|++++++++++.+.....
T Consensus 203 ~~~l~~l~~l~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~t~--sK~~~~G~r~G~~~~~~~~~~~~~~~~~ 278 (406)
T 4adb_A 203 NAFLQGLRELCNR--HNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLTT--AKALGGGFPVGALLATEECARVMTVGTH 278 (406)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEE--CGGGGTTSCCEEEEECHHHHHTCCTTSS
T ss_pred HHHHHHHHHHHHH--cCCEEEEeccccCCCccchhHHHHhcCCCCCEEEe--chhhcCCCCeEEEEEcHHHHhhhccCCc
Confidence 58899999999 9999999999963211 11222234677754 9999754458999999999887764321
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcC--CccccCCCccCC
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG--LKNCTQKEEWFS 305 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~ 305 (367)
+. .++.+...+.+..++++.+.+ ++..++++++++++.+.|++++ +....... ..
T Consensus 279 ----------------~~--~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~ 335 (406)
T 4adb_A 279 ----------------GT--TYGGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINHRYGLFSEVR--GL 335 (406)
T ss_dssp ----------------CC--SSTTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE--EE
T ss_pred ----------------CC--CCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEE--EE
Confidence 11 335666666666666665533 5678888999999999998863 22211111 13
Q ss_pred CceEEEEcCCCC--CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHH
Q 017726 306 DTVTAVIVPSHI--NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 306 ~~~~~~~~~~~~--~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~ 358 (367)
+.++++.+++.. +..++++.|.++ ||.+.++. ++++|+++....++++
T Consensus 336 g~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~----~~~iRi~~~~~~~~e~ 385 (406)
T 4adb_A 336 GLLIGCVLNADYAGQAKQISQEAAKA-GVMVLIAG----GNVVRFAPALNVSEEE 385 (406)
T ss_dssp TTEEEEEECTTTTTCHHHHHHHHHHT-TEECEESS----TTEEEECCCTTCCHHH
T ss_pred EEEEEEEEeCCcHHHHHHHHHHHHHC-CcEEeecC----CCeEEEECCCCCCHHH
Confidence 457778876533 678999999766 99998753 5689997555555443
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-25 Score=204.48 Aligned_cols=307 Identities=17% Similarity=0.113 Sum_probs=204.3
Q ss_pred ChHHHHHHHccCCCCC----CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHH---ccCCCCCeEEEEeC
Q 017726 20 IPDQVIRAMNRNNEDY----RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT---NTLSPGDRIISFLI 92 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~~----~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~---~~~~~gd~vl~~~~ 92 (367)
.++.+.+++.+..... ..+.......++++.|+++++.+.++++++++||++|+..++. ++..+| .|++.+|
T Consensus 58 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~-~vi~~~p 136 (426)
T 1sff_A 58 LHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRS-GTIAFSG 136 (426)
T ss_dssp TCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCC-EEEEETT
T ss_pred CCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCC-eEEEECC
Confidence 4677888887754321 1234457788999999999932333579999999999999987 566666 8999999
Q ss_pred CcchHHHHHHHHHhCCc-------------eEEEeCCCC-----CCCCHHHHHHHHhcc-CCCCccEEEEEe-cCCCccc
Q 017726 93 GQFSLLWIDQQQRLNFN-------------VDVVESDWG-----EGAKLDVLASKLAAD-TAHTIKAICIVH-NETATGV 152 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~-------------~~~v~~~~~-----~~~d~e~l~~~i~~~-~~~~~~lv~~~~-~~n~tG~ 152 (367)
.|++... ......|.+ +..++.+.+ +.+|++++++++++. ..+++++|++++ ++| ||.
T Consensus 137 ~y~~~~~-~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~n-tG~ 214 (426)
T 1sff_A 137 AYHGRTH-YTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGE-GGF 214 (426)
T ss_dssp CCCCSSH-HHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTT-TTS
T ss_pred CcCCCch-HhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCC-CCc
Confidence 8876532 223334432 667776531 236899999998741 002567777743 456 997
Q ss_pred ccc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhc
Q 017726 153 TNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASK 223 (367)
Q Consensus 153 ~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~ 223 (367)
+.+ +++|.++|++ +|+++|+|++|+.... .++.....+|++ |++|+++++..+|++++++++++.+.
T Consensus 215 ~~~~~~~l~~l~~l~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~GlriG~~~~~~~~~~~l~ 290 (426)
T 1sff_A 215 YASSPAFMQRLRALCDE--HGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSIAGGFPLAGVTGRAEVMDAVA 290 (426)
T ss_dssp CBCCHHHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEE--EECGGGGTSSCCEEEEEEHHHHTTSC
T ss_pred ccCCHHHHHHHHHHHHH--cCCEEEEechhhccCcccchhhhhhcCCCCCEE--EEcccccCCCceEEEEEcHHHHhhhc
Confidence 776 9999999999 9999999999983221 122222236665 66799964233699999998877665
Q ss_pred cCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcC--CccccCCC
Q 017726 224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG--LKNCTQKE 301 (367)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~ 301 (367)
.... + ..++.+...+.++.++++.+.+. ...++..++++++++.|++++ ++......
T Consensus 291 ~~~~----------------~--~~~~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 349 (426)
T 1sff_A 291 PGGL----------------G--GTYAGNPIACVAALEVLKVFEQE---NLLQKANDLGQKLKDGLLAIAEKHPEIGDVR 349 (426)
T ss_dssp TTSB----------------C--CSSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred cCCc----------------C--cCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 3110 1 13346676777788888887664 345677888889999888752 43222111
Q ss_pred ccCCCceEEEEcC--------CCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 302 EWFSDTVTAVIVP--------SHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 302 ~~~~~~~~~~~~~--------~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
+ . +.++++.++ ++.+..++.+.|.++ ||.+.+|... ++++|+++....+++++
T Consensus 350 ~-~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~~~--~~~iRi~~~~~~~~~~i 410 (426)
T 1sff_A 350 G-L-GAMIAIELFEDGDHNKPDAKLTAEIVARARDK-GLILLSCGPY--YNVLRILVPLTIEDAQI 410 (426)
T ss_dssp E-E-TTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHT-TEECEEESTT--SCEEEECCCTTCCHHHH
T ss_pred E-E-EEEEEEEEecCccccCCChHHHHHHHHHHHHC-CcEEecCCCC--CCEEEEECCccCCHHHH
Confidence 1 2 457778873 123456788999765 9999987542 56899997545554443
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.8e-25 Score=200.94 Aligned_cols=210 Identities=14% Similarity=0.124 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 119 (367)
...+++|+.+++++|.+ + .++++||++|+..++. ++.+||+|+++.+.|++.. +...++..|++++.++.+
T Consensus 55 ~~~~~lr~~la~~~g~~--~-~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~--- 127 (393)
T 1n8p_A 55 PNRENLERAVAALENAQ--Y-GLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDL--- 127 (393)
T ss_dssp HHHHHHHHHHHHHTTCS--E-EEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSH---
T ss_pred hhHHHHHHHHHHHhCCC--c-EEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCC---
Confidence 56789999999999986 3 4555677999999999 8899999999999877543 223456679999999875
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCC----CcEEEEeeeeccCceeeccccccceEE
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRH----PALFLVDGVSSICAIDFRMDEWGIDVA 195 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~----~~~vi~D~~~~~~~~~~~~~~~~~d~~ 195 (367)
| ++++++++ +++++|++++++||+|.+.|+++|.++|++ + |+++++|++|+.+... +....++|++
T Consensus 128 --d-~~l~~~i~----~~t~lv~~~~~~nptG~~~~l~~i~~la~~--~~~~~~~~livD~a~~~~~~~-~~~~~~~di~ 197 (393)
T 1n8p_A 128 --L-NDLPQLIK----ENTKLVWIETPTNPTLKVTDIQKVADLIKK--HAAGQDVILVVDNTFLSPYIS-NPLNFGADIV 197 (393)
T ss_dssp --H-HHHHHHSC----SSEEEEEECSSCTTTCCCCCHHHHHHHHHH--HTTTTTCEEEEECTTTHHHHC-CGGGGTCSEE
T ss_pred --h-HHHHHhcc----cCceEEEEECCCCCcceecCHHHHHHHHHH--hCCCCCCEEEEeCCccccccC-CHHHcCCeEE
Confidence 7 88998887 467999999999999999999999999999 8 9999999999876543 4444579999
Q ss_pred EecCCCcccCCCc--c-eeeeeC-HHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhCh
Q 017726 196 LTGSQKALSLPTG--M-GIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGL 271 (367)
Q Consensus 196 ~~s~~K~~~g~~g--~-g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~ 271 (367)
++|+||+++ ++| + |+++++ +++++++.... ...|. +++.....++..+++. +
T Consensus 198 ~~S~sK~~g-~~G~rigG~~~~~~~~~~~~l~~~~--------------~~~g~----~~~~~~~~~~~~~l~~-----~ 253 (393)
T 1n8p_A 198 VHSATKYIN-GHSDVVLGVLATNNKPLYERLQFLQ--------------NAIGA----IPSPFDAWLTHRGLKT-----L 253 (393)
T ss_dssp EEETTTTTT-CSSCCCCEEEEESCHHHHHHHHHHH--------------HHHCC----CCCHHHHHHHHHHHTT-----H
T ss_pred EEECccccc-CCCCceeEEEEeCCHHHHHHHHHHH--------------HhcCC----CCCHHHHHHHHhccch-----H
Confidence 999999985 655 5 888885 77777765320 01121 2333222222223322 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHc
Q 017726 272 ENVIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 272 ~~~~~~~~~~~~~l~~~L~~~ 292 (367)
....++..+++..+.+.|++.
T Consensus 254 ~~~~~~~~~~~~~l~~~L~~~ 274 (393)
T 1n8p_A 254 HLRVRQAALSANKIAEFLAAD 274 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 455666777888888888775
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.5e-25 Score=213.30 Aligned_cols=296 Identities=8% Similarity=0.019 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC---
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--- 118 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--- 118 (367)
....++++.+++++|.+. .+++++|+++++..++.+++.+||.|++..+.|.+... ..++..|++++.++...+
T Consensus 173 ~~i~e~e~~lA~~~gae~--~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~-~~~~l~Ga~~v~v~~~~~~~~ 249 (730)
T 1c4k_A 173 GPAVAAEKHAARVYNADK--TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYN-SALAMAGGRPVYLQTNRNPYG 249 (730)
T ss_dssp THHHHHHHHHHHHTTCSE--EEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHH-HHTTTTCCEEEEECEEECTTC
T ss_pred HHHHHHHHHHHHHHCCCc--EEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHH-HHHHHCCCEEEEEeCCccccC
Confidence 457899999999999875 47777777899999999999999999999999887642 225678999888876432
Q ss_pred --CCCCHHHH-----HHHHhccC-----CCCc-cEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCce--
Q 017726 119 --EGAKLDVL-----ASKLAADT-----AHTI-KAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI-- 183 (367)
Q Consensus 119 --~~~d~e~l-----~~~i~~~~-----~~~~-~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~-- 183 (367)
+.+|++++ +++++++. +.++ |++++++| |++|.+.|+++|.++|++ +|+++++|++|+.+..
T Consensus 250 i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~--~g~~livDeAh~~~~~f~ 326 (730)
T 1c4k_A 250 FIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGH--LCDYIEFDSAWVGYEQFI 326 (730)
T ss_dssp CEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGG--GBSEEEEECTTCCGGGSS
T ss_pred ccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHH--cCCeEEEEcccccccccC
Confidence 33688888 88887541 0123 89999998 689999999999999999 9999999999864211
Q ss_pred -------eeccccccce----EEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHH---HHHhhcCCccCC
Q 017726 184 -------DFRMDEWGID----VALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDY---IKFYNLGTFWPY 249 (367)
Q Consensus 184 -------~~~~~~~~~d----~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 249 (367)
+++....++| +++.|+||+++|+.+.|+++++++.+.. .....+.... ...+. ..
T Consensus 327 ~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g------~~~~i~~~~~~~~~~~~~-----st 395 (730)
T 1c4k_A 327 PMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKG------QLRYCDHKHFNNSFNLFM-----ST 395 (730)
T ss_dssp GGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTT------STTCCCHHHHHHHHHHHS-----CS
T ss_pred cccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcC------cccccCHHHHHHHHHHhC-----CC
Confidence 1122123667 9999999999888877888777664311 0111221111 11222 23
Q ss_pred CCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-c-CCccccCCC--------------------------
Q 017726 250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQKE-------------------------- 301 (367)
Q Consensus 250 ~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~-------------------------- 301 (367)
+++...++++.++++.+..++.++..++..++++++++.|++ . |+++..+..
T Consensus 396 sp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (730)
T 1c4k_A 396 SPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKG 475 (730)
T ss_dssp SCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTT
T ss_pred CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCcc
Confidence 588888899999998887633356678899999999999999 4 888765421
Q ss_pred ------ccC-C------CceEEEEcCC-----------CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHH
Q 017726 302 ------EWF-S------DTVTAVIVPS-----------HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV 357 (367)
Q Consensus 302 ------~~~-~------~~~~~~~~~~-----------~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~ 357 (367)
... . ...+.+..|. +.++.++.++|.++ ||.+... ....+|+.+...++.+
T Consensus 476 ~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~-GI~v~~~----~~~~ir~~~s~g~t~e 550 (730)
T 1c4k_A 476 AKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDH-GIIPEKS----DLNSILFLMTPAETPA 550 (730)
T ss_dssp CTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHT-TCCCSEE----CSSEEEEECCTTCCHH
T ss_pred chhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHC-CcEEEEC----CCCeEEEEeCCCCCHH
Confidence 000 1 1114566531 46788999999766 9877532 2456888877777655
Q ss_pred HH
Q 017726 358 MF 359 (367)
Q Consensus 358 ~~ 359 (367)
++
T Consensus 551 ~i 552 (730)
T 1c4k_A 551 KM 552 (730)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-24 Score=210.30 Aligned_cols=295 Identities=9% Similarity=-0.001 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC---
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--- 118 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--- 118 (367)
....++++.+++++|.+. .+++++|+++++..++.+++.+||.|++..+.|.+... .+...|++++.++.+.+
T Consensus 205 g~v~~~ee~la~l~G~d~--~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~--~~~~~G~~~v~v~~~~~~~g 280 (755)
T 2vyc_A 205 GAFGESEKYAARVFGADR--SWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQ--GLMLTGAKPVYMVPSRNRYG 280 (755)
T ss_dssp HHHHHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH--HHHHHCCEEEEECCCBCTTS
T ss_pred cHHHHHHHHHHHHhCCCc--eEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHH--HHHHcCCEEEEEeCCCCccc
Confidence 557789999999999864 47788887899999999999999999999999988653 35678999999987542
Q ss_pred --CCC-----CHHHHHHHHhccCC------CCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceee
Q 017726 119 --EGA-----KLDVLASKLAADTA------HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF 185 (367)
Q Consensus 119 --~~~-----d~e~l~~~i~~~~~------~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~ 185 (367)
+.+ |++++++++++++. .+++++++++| |++|.+.|+++|.++|++ +|+++++|++|+......
T Consensus 281 ~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~--~~~~livDeA~~~~~~~~ 357 (755)
T 2vyc_A 281 IIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEK--TSDRLHFDEAWYGYARFN 357 (755)
T ss_dssp CBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTT--TCSEEEEECTTCTTGGGC
T ss_pred cccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHH--cCCEEEEECcCchhcccC
Confidence 235 99999999986420 13459999997 799999999999999999 999999999997432111
Q ss_pred c----ccc-cc--ceE------EEecCCCcccCCCcceeeeeCHH--HH--HHhccCCCCceeechHHHHHHhhcCCccC
Q 017726 186 R----MDE-WG--IDV------ALTGSQKALSLPTGMGIVCASPK--AL--EASKTAKSVRVFFDWKDYIKFYNLGTFWP 248 (367)
Q Consensus 186 ~----~~~-~~--~d~------~~~s~~K~~~g~~g~g~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (367)
+ ... .+ +|+ ++.|+||+++|+.+.|+++++++ .+ .++ ......++ .
T Consensus 358 ~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~------------~~~~~~~~-----s 420 (755)
T 2vyc_A 358 PIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRF------------NQAYMMHA-----T 420 (755)
T ss_dssp GGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHH------------HHHHHHTS-----C
T ss_pred cccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHH------------HHHHHHhC-----C
Confidence 1 111 24 565 99999999988887788888655 11 111 11111222 3
Q ss_pred CCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-C---------CccccCCCc----------------
Q 017726 249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-G---------LKNCTQKEE---------------- 302 (367)
Q Consensus 249 ~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g---------~~~~~~~~~---------------- 302 (367)
.+++...++++.+|++.+...|.+++.++..++++++++.|+++ | ++++.+...
T Consensus 421 ~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (755)
T 2vyc_A 421 TSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPT 500 (755)
T ss_dssp SSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCH
T ss_pred CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccc
Confidence 36889999999999998877755678889999999999999887 6 655554210
Q ss_pred -----------------------------cCCCceEEEEcCC----------CCCHHHHHHHHHhhCCeEEccCCCCCCC
Q 017726 303 -----------------------------WFSDTVTAVIVPS----------HINSSEIVRRAWQRYNLSLGLGLNKVAG 343 (367)
Q Consensus 303 -----------------------------~~~~~~~~~~~~~----------~~~~~~l~~~L~~~~gv~v~~g~~~~~~ 343 (367)
......+.+.++. ++++.++.+.|.+ +||.+... ..
T Consensus 501 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~-~gI~~e~~----~~ 575 (755)
T 2vyc_A 501 KLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGR-HGIVPTRT----TD 575 (755)
T ss_dssp HHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHT-TTCCCSEE----CS
T ss_pred hhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHH-CCCEEeec----CC
Confidence 0022456677752 4666899999965 79876431 24
Q ss_pred cEEEEeecCCCCH--HHHHHhhhh
Q 017726 344 KVFRIGHLGHLNE--VMFNFQLLF 365 (367)
Q Consensus 344 ~~iRi~~~~~~~~--~~~~~~~l~ 365 (367)
..+|+.+...++. .+....+|.
T Consensus 576 ~~v~~~~~~g~t~~~~~~l~~al~ 599 (755)
T 2vyc_A 576 FQIMFLFSMGVTRGKWGTLVNTLC 599 (755)
T ss_dssp SEEEEECCTTCCTTTTHHHHHHHH
T ss_pred CeEEEEECCCCCHHHHHHHHHHHH
Confidence 5688876665544 344444443
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.2e-25 Score=202.22 Aligned_cols=284 Identities=16% Similarity=0.119 Sum_probs=194.9
Q ss_pred HHHHHHHccCCCC------CCCCc-HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEe-CC
Q 017726 22 DQVIRAMNRNNED------YRSPA-VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFL-IG 93 (367)
Q Consensus 22 ~~v~~a~~~~~~~------~~~~~-~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~-~~ 93 (367)
.++++++.+.... ..++. .....+++++.+++++|.+....-++++||++|+..++.+++.+||+|++.. +.
T Consensus 38 ~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~ 117 (431)
T 3ht4_A 38 FRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLYITGKP 117 (431)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSC
T ss_pred HHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 4677777664221 11122 1244788999999999987532112245889999999999999999999998 76
Q ss_pred cchHH-HH-------HHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEe-cCCCcccc---ccHHHHHH
Q 017726 94 QFSLL-WI-------DQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVH-NETATGVT---NNLSKVRK 161 (367)
Q Consensus 94 ~~~~~-~~-------~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~-~~n~tG~~---~~~~~i~~ 161 (367)
|.+.. .. ..++..|++++.++.++++.+|+++++++++ +++++|++++ ++||+|.. .++++|.+
T Consensus 118 y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~----~~tk~V~i~~sp~np~~~~~~~~~l~~i~~ 193 (431)
T 3ht4_A 118 YDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIH----SNTKMIGIQRSKGYATRPSFTISQIKEMIA 193 (431)
T ss_dssp CTTHHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCC----TTEEEEEEECSCTTSSSCCCCHHHHHHHHH
T ss_pred chhHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcC----CCCeEEEEECCCCCCCCCcCCHHHHHHHHH
Confidence 66543 11 2234579999999998888999999999997 4779999995 66666654 46888888
Q ss_pred HHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccC---CCcceeeeeCHHHHHHhccCCCCceeechHHHH
Q 017726 162 LLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSL---PTGMGIVCASPKALEASKTAKSVRVFFDWKDYI 238 (367)
Q Consensus 162 ~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g---~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (367)
+|++.++|+++++|++|+.+.........++|++++|++|+++| +.| |++++++++++++........
T Consensus 194 la~~~~~~~~livDea~~~~~~~~~~~~~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~~li~~l~~~~~~~~-------- 264 (431)
T 3ht4_A 194 FVKEIKPDVVVFVDNCYGEFIEEQEPCHVGADLMAGSLIKNPGGGIVKTG-GYIVGKEQYVEACAYRLTSPG-------- 264 (431)
T ss_dssp HHHHHCTTCEEEEECTTCTTSSSCCGGGTTCSEEEEETTSGGGTTTCSSC-EEEEECHHHHHHHHHHHSCTT--------
T ss_pred HHHhhCCCCEEEEeCCChhhccCCCccccCCeEEEcCccccCCCCCCCce-EEEEecHHHHHHHHHHhccCC--------
Confidence 88875579999999999887654444456789999999999876 566 999999999888764211000
Q ss_pred HHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCC
Q 017726 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHIN 318 (367)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (367)
.+. ...++......+...+.. +..+.++..+++.++.+.|+++|+++.+.....+...++.+.+++...
T Consensus 265 ----~g~--~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~a~~l~~~L~~~g~~v~p~~~~~~~~li~~i~l~~~~~ 333 (431)
T 3ht4_A 265 ----IGA--EAGASLYSLQEMYQGFFL-----APHVAGQALKGAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFDDKDR 333 (431)
T ss_dssp ----TTT--SCSCCCSCSHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTCCEESCTTSCCSSSCCEEECCCHHH
T ss_pred ----ccc--ccCccHHHHHHHHhHhhh-----HHHHHHHHHHHHHHHHHHHHhCcCEecCCCCCCCccEEEEEEeCCHHH
Confidence 010 001111101122223333 355677889999999999999988774432222444577788853334
Q ss_pred HHHHHHHHHhh
Q 017726 319 SSEIVRRAWQR 329 (367)
Q Consensus 319 ~~~l~~~L~~~ 329 (367)
..++++.|.+.
T Consensus 334 ~~~~~~~l~~~ 344 (431)
T 3ht4_A 334 MIAFCQAIQYA 344 (431)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 56788888654
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-24 Score=199.66 Aligned_cols=296 Identities=19% Similarity=0.147 Sum_probs=204.4
Q ss_pred ChHHHHHHHccCCCC--CCCC-cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC---------CCC-Ce
Q 017726 20 IPDQVIRAMNRNNED--YRSP-AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL---------SPG-DR 86 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~---------~~g-d~ 86 (367)
.++++.+++.+.... +.+. ...+...++++.+++++|. +.+++++||++|+..++..+. .+| ++
T Consensus 93 ~~p~v~~Ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~---~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~ 169 (439)
T 2oat_A 93 CHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNY---HKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAK 169 (439)
T ss_dssp TCHHHHHHHHHHHTTCSCCCTTSEESSHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCE
T ss_pred CCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHHhcCC---CEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCe
Confidence 678888888775432 1111 1234567899999999973 359999999999999887643 356 89
Q ss_pred EEEEeCCcchHHHHHHHHHhC------------CceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc
Q 017726 87 IISFLIGQFSLLWIDQQQRLN------------FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN 154 (367)
Q Consensus 87 vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~ 154 (367)
|++.++.|++... ......| .++..++.+ |+++++++++. +++++|++++.++++|.+.
T Consensus 170 vi~~~~~yhg~~~-~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~---~~~~~vi~ep~~~~~G~~~ 240 (439)
T 2oat_A 170 IVFAAGNFWGRTL-SAISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPALERALQD---PNVAAFMVEPIQGEAGVVV 240 (439)
T ss_dssp EEEETTCCCCSSH-HHHTTCCCHHHHTTSCSCCTTEEEECSS-----CHHHHHHHTTS---TTEEEEEECSSBTTTTSBC
T ss_pred EEEEcCCCCCCCH-hHhhcCCChhcccCCCCCCCCeEEeCCC-----CHHHHHHHhCC---CCEEEEEEECCCCCCCCcC
Confidence 9999988877532 1222223 456666643 89999999952 4678888777778899876
Q ss_pred ----cHHHHHHHHHhcCCCcEEEEeeeeccCce---e--eccccccceEEEecCCCcccCC-CcceeeeeCHHHHHHhcc
Q 017726 155 ----NLSKVRKLLDEYRHPALFLVDGVSSICAI---D--FRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKT 224 (367)
Q Consensus 155 ----~~~~i~~~~~~~~~~~~vi~D~~~~~~~~---~--~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~~ 224 (367)
++++|.++|++ +|+++|+|++|..... . ++......|++ |++|+++++ ..+|++++++++++.+..
T Consensus 241 ~~~~~l~~l~~l~~~--~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~G~~~~G~v~~~~~~~~~l~~ 316 (439)
T 2oat_A 241 PDPGYLMGVRELCTR--HQVLFIADEIQTGLARTGRWLAVDYENVRPDIV--LLGKALSGGLYPVSAVLCDDDIMLTIKP 316 (439)
T ss_dssp CCTTHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCCEEEEECHHHHTTSCT
T ss_pred CCHHHHHHHHHHHHH--cCCEEEEeccccCCccCCcchhHHHhCCCCcEE--EecccccCCCCCeEEEEECHHHHhccCC
Confidence 69999999999 9999999999963211 1 12222346876 567999764 347999999998776653
Q ss_pred CCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccC
Q 017726 225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWF 304 (367)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 304 (367)
... +. .++.+...+++..++++.+.++ +..++..++++++.+.|+++++++..... .
T Consensus 317 ~~~----------------~~--t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~--~ 373 (439)
T 2oat_A 317 GEH----------------GS--TYGGNPLGCRVAIAALEVLEEE---NLAENADKLGIILRNELMKLPSDVVTAVR--G 373 (439)
T ss_dssp TSS----------------CC--SSTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHTTSCTTTEEEEE--E
T ss_pred CCc----------------cc--CCCcCHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHhcCCCcEEEE--e
Confidence 210 11 3346666667777788887664 35667888999999999887655432111 1
Q ss_pred CCceEEEEcCCC--CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 305 SDTVTAVIVPSH--INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 305 ~~~~~~~~~~~~--~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
.+.++++.+++. .+..++++.|.++ ||.+.++ .++++|+++....+++++
T Consensus 374 ~g~~~~v~l~~~~~~~~~~l~~~l~~~-Gv~v~~~----~~~~iRi~~~~~~t~e~i 425 (439)
T 2oat_A 374 KGLLNAIVIKETKDWDAWKVCLRLRDN-GLLAKPT----HGDIIRFAPPLVIKEDEL 425 (439)
T ss_dssp ETTEEEEEECCCSSCCHHHHHHHHHHT-TEECCBS----SSSEEEECCCTTCCHHHH
T ss_pred eeeEEEEEEecCccHHHHHHHHHHHHC-CeEEecC----CCCEEEEECccCCCHHHH
Confidence 345677887544 4578899999765 9999873 256899987555555443
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-24 Score=196.87 Aligned_cols=295 Identities=13% Similarity=0.159 Sum_probs=197.5
Q ss_pred hHHHHHHHccCCCC--CC-CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC-------CCCCeEEEE
Q 017726 21 PDQVIRAMNRNNED--YR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-------SPGDRIISF 90 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~-~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~-------~~gd~vl~~ 90 (367)
++++.+++.+.... +. .....+...+++++++++++ .+++++++||++|+..++..+. .++++|++.
T Consensus 54 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~---~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~ 130 (395)
T 3nx3_A 54 HAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASA---LERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAF 130 (395)
T ss_dssp CHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEE
T ss_pred CHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC---CCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEE
Confidence 56777777664332 11 11234678899999999998 2359999999999999887653 457999999
Q ss_pred eCCcchHHHHHHH-----------HHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----
Q 017726 91 LIGQFSLLWIDQQ-----------QRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---- 155 (367)
Q Consensus 91 ~~~~~~~~~~~~~-----------~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---- 155 (367)
++.|++....... ...+.++..++.+ |+++++++++ +++++|++++++|++|.+.+
T Consensus 131 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~----~~~~~v~~~~~~~~~G~~~~~~~~ 201 (395)
T 3nx3_A 131 KHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN-----DISSVEKLVN----EKTCAIILESVQGEGGINPANKDF 201 (395)
T ss_dssp TTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-----CHHHHHTTCC----TTEEEEEEESEECTTSCEECCHHH
T ss_pred cCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-----CHHHHHHhcc----CCeEEEEEeCccCCCCcccCCHHH
Confidence 9988775321110 0112345555543 7999999887 46799999999999999877
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeec-cCce----eeccccccceEEEecCCCcccCCCcceeeeeCHHH-HHHhccCCCCc
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSS-ICAI----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKA-LEASKTAKSVR 229 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~-~~~~----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~-~~~~~~~~~~~ 229 (367)
+++|.++|++ +|+++|+|++|+ ++.. ..+......|++++ +|.++++.++|++++++++ ++.+.....
T Consensus 202 l~~l~~l~~~--~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~--sK~~~~G~~~G~~~~~~~~~~~~~~~~~~-- 275 (395)
T 3nx3_A 202 YKALRKLCDE--KDILLIADEIQCGMGRSGKFFAYEHAQILPDIMTS--AKALGCGLSVGAFVINQKVASNSLEAGDH-- 275 (395)
T ss_dssp HHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGTTTSCCEEEEECHHHHHHHSCTTCC--
T ss_pred HHHHHHHHHH--cCCEEEEEecccCCCcCCcchhHHhcCCCCCEEEe--cccccCCCceEEEEEchhhhhhhcCCccc--
Confidence 9999999999 999999999987 3211 11222234566654 6888766668999999998 777754311
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCCc
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDT 307 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~ 307 (367)
+. .++.+...+++..++++.+.++. ..++..++.+++++.|++. .+....... ..+.
T Consensus 276 --------------~~--~~~~~~~~~~aa~aal~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~g~ 334 (395)
T 3nx3_A 276 --------------GS--TYGGNPLVCAGVNAVFEIFKEEK---ILENVNKLTPYLEQSLDELINEFDFCKKRK--GLGF 334 (395)
T ss_dssp --------------SS--CBSCCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTEEEEE--EETT
T ss_pred --------------CC--CCCCCHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHhCCCeEEEE--eEEE
Confidence 11 34566666677777787765543 3445555666666666553 122111100 1345
Q ss_pred eEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 308 VTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 308 ~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
++++.+++..+..++.+.|.++ ||.+.++. ++++||++....+.+++
T Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~----~~~iRi~~~~~~t~e~i 381 (395)
T 3nx3_A 335 MQGLSLDKSVKVAKVIQKCQEN-ALLLISCG----ENDLRFLPPLILQKEHI 381 (395)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT-TEECEEET----TTEEEECCCTTCCHHHH
T ss_pred EEEEEeCCcchHHHHHHHHHHC-CCEEecCC----CCEEEEECCCCCCHHHH
Confidence 7778886555778899999755 99998753 57899986555555443
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=195.48 Aligned_cols=295 Identities=16% Similarity=0.090 Sum_probs=197.7
Q ss_pred ChHHHHHHHccCCCC--C--CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC---------CCC-C
Q 017726 20 IPDQVIRAMNRNNED--Y--RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL---------SPG-D 85 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~--~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~---------~~g-d 85 (367)
.++.+.+++.+.... + ..+ ..+...++++.++++++. +.+++++||++|+..++.... .+| +
T Consensus 82 ~~p~v~~ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~g~---~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~ 157 (433)
T 1z7d_A 82 CHPNILNAMINQAKNLTICSRAF-FSVPLGICERYLTNLLGY---DKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMA 157 (433)
T ss_dssp TCHHHHHHHHHHHTTCSCCCTTS-EEHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCC
T ss_pred CCHHHHHHHHHHHHhCCCccCCc-CCHHHHHHHHHHHhhcCC---CeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCC
Confidence 667788887775432 1 112 345678899999999973 359999999999999887642 467 8
Q ss_pred eEEEEeCCcchHHHHHHHHHhC------------CceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccc
Q 017726 86 RIISFLIGQFSLLWIDQQQRLN------------FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT 153 (367)
Q Consensus 86 ~vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~ 153 (367)
+|++.++.|++... ......| ..+..++.+ |+++++++++. +++++|++++.++++|.+
T Consensus 158 ~vi~~~~~yhg~~~-~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~---~~~~~vi~ep~~~~~G~~ 228 (433)
T 1z7d_A 158 KIVVCKNNFSGRTL-GCISASTTKKCTSNFGPFAPQFSKVPYD-----DLEALEEELKD---PNVCAFIVEPIQGEAGVI 228 (433)
T ss_dssp EEEEETTC---------------------------CEEEECTT-----CHHHHHHHHTS---TTEEEEEECSSBSTTTSB
T ss_pred eEEEEeCCcCCcch-hhhcccCCccccccCCCCCCCeEEeCCC-----CHHHHHHHhCC---CCEEEEEEECCCCCCCcc
Confidence 99999988877532 1112122 344555542 89999999952 467888887777889987
Q ss_pred c----cHHHHHHHHHhcCCCcEEEEeeeeccCce---e--eccccccceEEEecCCCcccCC-CcceeeeeCHHHHHHhc
Q 017726 154 N----NLSKVRKLLDEYRHPALFLVDGVSSICAI---D--FRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASK 223 (367)
Q Consensus 154 ~----~~~~i~~~~~~~~~~~~vi~D~~~~~~~~---~--~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~ 223 (367)
. ++++|.++|++ +|+++|+|++|..... . ++......|++ +++|+++++ ..+|++++++++++.+.
T Consensus 229 ~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G~~~~G~v~~~~~~~~~l~ 304 (433)
T 1z7d_A 229 VPSDNYLQGVYDICKK--YNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVI--LLGKALSGGHYPISAVLANDDIMLVIK 304 (433)
T ss_dssp CCCTTHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCCEEEEECHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHH--cCCEEEEecCccCCCcCCcchhhHhcCCCCCEE--EECccccCCCCCeEEEEECHHHHhhhc
Confidence 6 69999999999 9999999999973211 1 12222346877 557999754 34799999999877665
Q ss_pred cCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCC
Q 017726 224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKE 301 (367)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~ 301 (367)
.... +. .++.+...+++..++++.+.+. +..++..++++++.+.|+++ +++......
T Consensus 305 ~~~~----------------~~--t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~ 363 (433)
T 1z7d_A 305 PGEH----------------GS--TYGGNPLAASICVEALNVLINE---KLCENAEKLGGPFLENLKRELKDSKIVRDVR 363 (433)
T ss_dssp TTCC----------------CC--TTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHTTCTTEEEEE
T ss_pred cccc----------------cc--cCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 3210 11 3356666677777788877664 35667888999999999886 654432111
Q ss_pred ccCCCceEEEEcCCC-CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 302 EWFSDTVTAVIVPSH-INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 302 ~~~~~~~~~~~~~~~-~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
..+.++++.+++. .+..++++.|.++ ||.+.++ .++++|+++....+++++
T Consensus 364 --~~g~~~~i~~~~~~~~~~~~~~~l~~~-Gv~v~~~----~~~~iRi~~~~~~t~e~i 415 (433)
T 1z7d_A 364 --GKGLLCAIEFKNELVNVLDICLKLKEN-GLITRDV----HDKTIRLTPPLCITKEQL 415 (433)
T ss_dssp --EETTEEEEEECTTTCCHHHHHHHHHHT-TEECCEE----TTTEEEECCCTTCCHHHH
T ss_pred --eeeeEEEEEEccChhHHHHHHHHHHHC-CeEEecC----CCCEEEEECCcCCCHHHH
Confidence 1345677887543 4578899999765 9999875 256899987555555443
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-24 Score=199.16 Aligned_cols=294 Identities=16% Similarity=0.077 Sum_probs=198.2
Q ss_pred ChHHHHHHHccCCCC--CCC-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC-------CC-CeEE
Q 017726 20 IPDQVIRAMNRNNED--YRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS-------PG-DRII 88 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~~~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~-------~g-d~vl 88 (367)
.++.+.+++.+.... +.+ ....+...++++.+++++|. +.+++++||++|+..++.++.. +| ++|+
T Consensus 74 ~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~---~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi 150 (420)
T 2pb2_A 74 CHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDATFA---ERVLFMNSGTEANETAFKLARHYACVRHSPFKTKII 150 (420)
T ss_dssp TCHHHHHHHHHHHTTCCCCCTTSCCHHHHHHHHHHHHHSSC---SEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEE
T ss_pred CCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhCCC---CeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEE
Confidence 356777777764332 111 11236678999999999973 3599999999999999987654 67 4899
Q ss_pred EEeCCcchHHHHHHHHHhCCc------------eEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccc---
Q 017726 89 SFLIGQFSLLWIDQQQRLNFN------------VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT--- 153 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~--- 153 (367)
+.++.|++... ......|.+ +..++.+ |+++++++++ +++++|++++++|++|.+
T Consensus 151 ~~~~~yh~~~~-~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~le~~i~----~~~~~vi~~p~~~~gG~~~~~ 220 (420)
T 2pb2_A 151 AFHNAFHGRSL-FTVSVGGQPKYSDGFGPKPADIIHVPFN-----DLHAVKAVMD----DHTCAVVVEPIQGEGGVQAAT 220 (420)
T ss_dssp EETTCCCCSSH-HHHHHSSCHHHHTTSSSCCSCEEEECTT-----CHHHHHHHCC----TTEEEEEECSEETTTTSEECC
T ss_pred EEeCCcCCcCH-HHHHhcCCccccccCCCCCCCeEEecCC-----CHHHHHHHhc----cCceEEEEeCCcCCCCeecCC
Confidence 99888876532 222233432 4555542 8999999997 467999999999988863
Q ss_pred -ccHHHHHHHHHhcCCCcEEEEeeeeccCce---e--eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCC
Q 017726 154 -NNLSKVRKLLDEYRHPALFLVDGVSSICAI---D--FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS 227 (367)
Q Consensus 154 -~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~---~--~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~ 227 (367)
.++++|.++|++ +|+++|+|++|..... . ++......|+++ ++|+++++.++|++++++++++.+.....
T Consensus 221 ~~~l~~l~~l~~~--~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~diit--~sK~l~~G~~iG~~~~~~~l~~~l~~~~~ 296 (420)
T 2pb2_A 221 PEFLKGLRDLCDE--HQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILT--SAKALGGGFPVSAMLTTQEIASAFHVGSH 296 (420)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSCCEEEEECHHHHTTCC----
T ss_pred HHHHHHHHHHHHH--cCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeEE--ecccccCCCceEEEEEhHHHHHhhcCCCc
Confidence 358899999999 9999999999963221 1 122223468774 57999765568999999987766543100
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCC
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFS 305 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~ 305 (367)
+. .++.+...+++..++++.+.+ ++..++.+++++++.+.|+++ +++...... ..
T Consensus 297 ----------------~~--t~~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--~~ 353 (420)
T 2pb2_A 297 ----------------GS--TYGGNPLACAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIR--GM 353 (420)
T ss_dssp ----------------CC--EECCCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE--EE
T ss_pred ----------------Cc--ccCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE--ec
Confidence 11 234566666666667776544 456778888999999999875 333322111 12
Q ss_pred CceEEEEcCCCC--CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHH
Q 017726 306 DTVTAVIVPSHI--NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 306 ~~~~~~~~~~~~--~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~ 358 (367)
+.++++.+++.. +..++.+.|.+ +||.+.++. ++.+|+++....++++
T Consensus 354 g~~~~v~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~----~~~iRl~~~~~~t~ee 403 (420)
T 2pb2_A 354 GLLIGAELKPKYKGRARDFLYAGAE-AGVMVLNAG----ADVMRFAPSLVVEEAD 403 (420)
T ss_dssp TTEEEEEECGGGTTCHHHHHHHHHH-TTEECEESS----TTEEEECCCTTCCHHH
T ss_pred ceEEEEEECCCchHHHHHHHHHHHH-CCCEEEeCC----CCEEEEECCCCCCHHH
Confidence 446777775332 57789999976 599998753 4689999654444443
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-24 Score=199.87 Aligned_cols=313 Identities=16% Similarity=0.127 Sum_probs=204.9
Q ss_pred hHHHHHHHccCCCCC---CC-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC--------CCCeEE
Q 017726 21 PDQVIRAMNRNNEDY---RS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS--------PGDRII 88 (367)
Q Consensus 21 ~~~v~~a~~~~~~~~---~~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~--------~gd~vl 88 (367)
++++.+++.+..... .. ........++++.++++++... +++++++||++|+..++.++.. ++|+|+
T Consensus 68 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi 146 (449)
T 3a8u_X 68 RKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNL-NHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMI 146 (449)
T ss_dssp CHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTE-EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred CHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCC-CEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 677888887754332 11 1223566789999999987654 4699999999999999877543 678999
Q ss_pred EEeCCcchHHHHHHHHHhC------------CceEEEeCCCCC-----CCC--------HHHHHHHHhccCCCCccEEEE
Q 017726 89 SFLIGQFSLLWIDQQQRLN------------FNVDVVESDWGE-----GAK--------LDVLASKLAADTAHTIKAICI 143 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~-----~~d--------~e~l~~~i~~~~~~~~~lv~~ 143 (367)
+.++.|++... ......| ..+..++.+... .+| ++++++++++...+++++|++
T Consensus 147 ~~~~~yhg~~~-~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~ 225 (449)
T 3a8u_X 147 GRARGYHGVNI-AGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFV 225 (449)
T ss_dssp EETTCCCCSSH-HHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEE
T ss_pred EECCCcCCCCh-hhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99998887532 1122222 134555544321 246 899999997531124577776
Q ss_pred EecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeec-cCce----eeccccccceEEEecCCCcccCC-Ccceeee
Q 017726 144 VHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSS-ICAI----DFRMDEWGIDVALTGSQKALSLP-TGMGIVC 213 (367)
Q Consensus 144 ~~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~-~~~~----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~ 213 (367)
++.+|++|.+.| +++|.++|++ +|+++|+|++|+ ++.. .++......|++ |++|++++. ..+|+++
T Consensus 226 ~p~~~~tG~~~~~~~~l~~l~~l~~~--~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~~G~~~ 301 (449)
T 3a8u_X 226 EPLAGSAGVLVPPEGYLKRNREICNQ--HNILLVFDEVITGFGRTGSMFGADSFGVTPDLM--CIAKQVTNGAIPMGAVI 301 (449)
T ss_dssp CSSBTTTTCBCCCTTHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSSCCEEEE
T ss_pred cCccCCCCCccCCHHHHHHHHHHHHH--hCCEEEEeccccCccccCcchhhhhcCCCCCEE--EEcccccCCCCceEEEE
Confidence 666678999888 9999999999 999999999994 5421 112222346776 556999752 2379999
Q ss_pred eCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-
Q 017726 214 ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW- 292 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~- 292 (367)
+++++++.+.....+... ..+..+. .++.+...+++..++++.+.+. +..++..++.+++++.|+++
T Consensus 302 ~~~~~~~~l~~~~~~~~~-------~~~~~~~--t~~~~~~~~aa~~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~ 369 (449)
T 3a8u_X 302 ASTEIYQTFMNQPTPEYA-------VEFPHGY--TYSAHPVACAAGLAALCLLQKE---NLVQSVAEVAPHFEKALHGIK 369 (449)
T ss_dssp EEHHHHHHHHTCSSCTTS-------CSSCCCC--TTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHTTT
T ss_pred ECHHHHHHhhccCccccc-------ccccccC--CCcccHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHh
Confidence 999988877642110000 0000111 3346666777778888877664 35667888999999999886
Q ss_pred CCccccCCCccCCCceEEEEcCCCCC-----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 293 GLKNCTQKEEWFSDTVTAVIVPSHIN-----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 293 g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
+++...... ..+.++++.++.... ..++.+.|.++ ||.+.++ ++++||++....+++++
T Consensus 370 ~~~~~~~~~--~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~-----g~~iRis~~~~~t~~~i 433 (449)
T 3a8u_X 370 GAKNVIDIR--NFGLAGAIQIAPRDGDAIVRPFEAGMALWKA-GFYVRFG-----GDTLQFGPTFNSKPQDL 433 (449)
T ss_dssp TSTTEEEEE--EETTEEEEEECCBTTBSSHHHHHHHHHHHHH-TEECEEE-----TTEEEECCCTTCCHHHH
T ss_pred cCCCeEEEe--eeEEEEEEEEecCcccccccHHHHHHHHHHC-CcEEecC-----CCEEEEECCCcCCHHHH
Confidence 344332111 234578888854322 23789999766 9999886 27899996555554443
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-24 Score=200.18 Aligned_cols=307 Identities=17% Similarity=0.076 Sum_probs=195.5
Q ss_pred ChHHHHHHHccCCCC--CC--CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCC
Q 017726 20 IPDQVIRAMNRNNED--YR--SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIG 93 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~~--~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~ 93 (367)
.++.+.+++.+.... +. .....+...+++++++++++...++++++++||++|+..++... ..+++.|++.++.
T Consensus 60 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~ 139 (439)
T 3dxv_A 60 GHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGA 139 (439)
T ss_dssp SCHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTC
T ss_pred CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 456677766653221 11 22334678899999999986554346999999999999998864 3467789998888
Q ss_pred cchHHHHHHHHHhCCc--------------eEEEeCCCCCCC-----CHHHHHHHHhccCCCCccEEEEEecCCCccccc
Q 017726 94 QFSLLWIDQQQRLNFN--------------VDVVESDWGEGA-----KLDVLASKLAADTAHTIKAICIVHNETATGVTN 154 (367)
Q Consensus 94 ~~~~~~~~~~~~~g~~--------------~~~v~~~~~~~~-----d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~ 154 (367)
|++.... .....+.. +..++.+..... |++++++++.+...+++++|++++++|++|.+.
T Consensus 140 yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~ 218 (439)
T 3dxv_A 140 YHGCTVG-SMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIV 218 (439)
T ss_dssp CCCSSHH-HHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBC
T ss_pred CCCCcHH-HHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCcc
Confidence 8765321 11111211 122333322212 689999999422115778999999999999998
Q ss_pred c----HHHHHHHHHhcCCCcEEEEeeeeccCc-----eeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccC
Q 017726 155 N----LSKVRKLLDEYRHPALFLVDGVSSICA-----IDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTA 225 (367)
Q Consensus 155 ~----~~~i~~~~~~~~~~~~vi~D~~~~~~~-----~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~ 225 (367)
+ +++|.++|++ ||+++|+|++|+... ...+......|++ |++|.++++.++|++++++++++.+...
T Consensus 219 ~~~~~l~~l~~l~~~--~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~~~G~riG~~~~~~~~~~~~~~~ 294 (439)
T 3dxv_A 219 PPDGFLRKFADICRA--HGILVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGLGGGLPLSAVIAPAEILDCASAF 294 (439)
T ss_dssp CCTTHHHHHHHHHHH--TTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGGGTTSCCEEEEEEHHHHTSCSSS
T ss_pred CCHHHHHHHHHHHHH--cCCEEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcchhcCCcceEEEEECHHHHhhhcCC
Confidence 8 9999999999 999999999996321 1122222346776 5679997544579999999988766542
Q ss_pred CCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCcc
Q 017726 226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEW 303 (367)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~ 303 (367)
.. +. .+ .+...+.+..++++.+.+.. ..++..++.+++++.|+++ .+.......
T Consensus 295 ~~----------------~~--t~-~~~~~~~aa~aal~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-- 350 (439)
T 3dxv_A 295 AM----------------QT--LH-GNPISAAAGLAVLETIDRDD---LPAMAERKGRLLRDGLSELAKRHPLIGDIR-- 350 (439)
T ss_dssp SC----------------CT--TT-TCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTEEEEE--
T ss_pred Cc----------------CC--Cc-ccHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCCeEEEE--
Confidence 11 11 33 55656666666777665543 4556666777777777664 122111100
Q ss_pred CCCceEEEEc--------CCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHH
Q 017726 304 FSDTVTAVIV--------PSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 304 ~~~~~~~~~~--------~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~ 358 (367)
..+.++++.+ ++..+..++.+.|.++ ||.+.++.. .+.++||++....++++
T Consensus 351 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--~~~~iRi~~~~~~t~e~ 410 (439)
T 3dxv_A 351 GRGLACGMELVCDRQSREPARAETAKLIYRAYQL-GLVVYYVGM--NGNVLEFTPPLTITETD 410 (439)
T ss_dssp EETTEEEEEEEEETTTTEECHHHHHHHHHHHHHH-TEECEEEST--TSCEEEECCCTTCCHHH
T ss_pred EEEEEEEEEEecCccccCCCHHHHHHHHHHHHHC-CcEEeecCC--CCCEEEEECCCCCCHHH
Confidence 1233555655 2223356788888776 999988632 24789998655555443
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-23 Score=194.62 Aligned_cols=309 Identities=15% Similarity=0.082 Sum_probs=185.2
Q ss_pred hHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC--------CCCCeEE
Q 017726 21 PDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--------SPGDRII 88 (367)
Q Consensus 21 ~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~--------~~gd~vl 88 (367)
++.+.+++.+.... .......+...+++++++++++.+.+ ++++++||++|+..++..+. .+++.|+
T Consensus 47 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi 125 (430)
T 3i4j_A 47 RAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPTF-RFWAVSGGSEATESAVKLARQYHVERGEPGRFKVI 125 (430)
T ss_dssp CHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCTTC-EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred CHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCCC-EEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 56677766653211 11122346678999999999987654 59999999999999988765 4578999
Q ss_pred EEeCCcchHHHHHHHHHhCC--------------ceEEEeCCCC---CCCCHHHHHHHHhccCCCCccEEEEEecCC-Cc
Q 017726 89 SFLIGQFSLLWIDQQQRLNF--------------NVDVVESDWG---EGAKLDVLASKLAADTAHTIKAICIVHNET-AT 150 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~--------------~~~~v~~~~~---~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n-~t 150 (367)
+.++.|++..... ....+. .+..++.+.. +..|++++++++++...+++++|+++.++| ++
T Consensus 126 ~~~~~yhg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~ 204 (430)
T 3i4j_A 126 TRVPSYHGASLGS-LAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASD 204 (430)
T ss_dssp EETTC--------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGG
T ss_pred EEeCCcCCCCccc-ccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcC
Confidence 9999887754211 111111 3444444322 223668999998752112456666666667 88
Q ss_pred ccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce---e--eccc-cccceEEEecCCCcccCC-CcceeeeeCHHHH
Q 017726 151 GVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI---D--FRMD-EWGIDVALTGSQKALSLP-TGMGIVCASPKAL 219 (367)
Q Consensus 151 G~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~---~--~~~~-~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~ 219 (367)
|.+.+ +++|.++|++ +|+++|+|++|..... . .... ....|+++ ++|.+++. ..+|+++++++++
T Consensus 205 G~~~~~~~~l~~l~~l~~~--~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t--~sK~l~~G~~r~G~~~~~~~i~ 280 (430)
T 3i4j_A 205 AALAPAPGYYERVRDICDE--AGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAV--LGKGLAAGYAPLAGLLAAPQVY 280 (430)
T ss_dssp TTCCCCTTHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEE--ECGGGTTTSSCCEEEEECHHHH
T ss_pred CcccCCHHHHHHHHHHHHH--cCCEEEEechhhCCCcccchhhhhhhcCCCCcEEE--EcccccCCccccEEEEECHHHH
Confidence 98776 8999999999 9999999999873211 1 1111 22356665 46998754 4579999999998
Q ss_pred HHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-----CC
Q 017726 220 EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-----GL 294 (367)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-----g~ 294 (367)
+.+..... . +..+. .++.+...+.+..++++.+.+++ ..++.+++.+++++.|+++ ++
T Consensus 281 ~~~~~~~~-~-----------~~~~~--t~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~ 343 (430)
T 3i4j_A 281 ETVMGGSG-A-----------FMHGF--TYAGHPVSVAAGLSVLDIVERED---LTGAAKERGAQLLAGLQALQARFPQM 343 (430)
T ss_dssp HHHHHTTC-B-----------CCCCC--TTTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred HHHhccCC-c-----------ccccC--CCCCCHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 88764310 0 00121 44567766677777787766643 3445555555666655553 23
Q ss_pred ccccCCCccCCCceEEEEcCCC---------CCHHHHHHHHHhhCCeEEccCCC---CCCCcEEEEeecCCCCHHH
Q 017726 295 KNCTQKEEWFSDTVTAVIVPSH---------INSSEIVRRAWQRYNLSLGLGLN---KVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~L~~~~gv~v~~g~~---~~~~~~iRi~~~~~~~~~~ 358 (367)
....+ . +.++++.+++. ....++++.|.++ ||.++++.. +..+.++||++....+.++
T Consensus 344 ~~~~~----~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~ 413 (430)
T 3i4j_A 344 MQVRG----T-GLLLGVVLGDLATGQAFETPGIASRIGAAALKR-GLITYPGSGAEPNGRGDHLLLGPPLSITAAE 413 (430)
T ss_dssp EEEEE----E-TTEEEEEEC------------CHHHHHHHHHHT-TEECC-----------CEEEECCCTTCCHHH
T ss_pred EEEEE----E-EEEEEEEeccccccCCCccHHHHHHHHHHHHhC-CCEEEecccccCCCCCCEEEEECCCCCCHHH
Confidence 33332 2 33566666321 1136788888755 999998722 2235679999765555443
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-24 Score=199.31 Aligned_cols=309 Identities=11% Similarity=0.066 Sum_probs=204.0
Q ss_pred hHHHHHHHccCCCC--CC--CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC-------CC-CeEE
Q 017726 21 PDQVIRAMNRNNED--YR--SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS-------PG-DRII 88 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~--~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~-------~g-d~vl 88 (367)
++++.+++.+.... +. .....+...+++++++++++...+ .+++++||++|+..++..+.. +| +.|+
T Consensus 93 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~~~~~~~-~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii 171 (457)
T 3tfu_A 93 HPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLD-TVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLM 171 (457)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHHSSTTEE-EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCcC-EEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEE
Confidence 55666666654221 21 222346677999999999976543 599999999999999877543 45 4788
Q ss_pred EEeCCcchHHHHHHHH------------HhCCceEEEeCCCC--CCCCHHHHHHHHhccCCCCccEEEEEe-cCCCcccc
Q 017726 89 SFLIGQFSLLWIDQQQ------------RLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVH-NETATGVT 153 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~------------~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~-~~n~tG~~ 153 (367)
+.++.|++........ .....+..++.+.. ...|+++++++++++. +++++|++++ ++|++|.+
T Consensus 172 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~-~~~aavi~ep~~~~~~G~~ 250 (457)
T 3tfu_A 172 TWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHA-GELAAVVVEPVVQGAGGMR 250 (457)
T ss_dssp EETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHG-GGEEEEEECSSEECTTTCE
T ss_pred EEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCC-CCEEEEEEeCCCcCCCCcc
Confidence 8888887753211111 11123444444322 1247899999998543 4678888888 89999988
Q ss_pred cc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCC-CcceeeeeCHHHHHHhc
Q 017726 154 NN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASK 223 (367)
Q Consensus 154 ~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~ 223 (367)
.+ +++|.++|++ +|+++|+|+++..... ..+......|++ +++|.++|+ .++|++++++++++.+.
T Consensus 251 ~~~~~~l~~l~~l~~~--~gillI~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK~l~gG~~~lG~v~~~~~i~~~~~ 326 (457)
T 3tfu_A 251 FHDPRYLHDLRDICRR--YEVLLIFDEIATGFGRTGALFAADHAGVSPDIM--CVGKALTGGYLSLAATLCTADVAHTIS 326 (457)
T ss_dssp ECCTHHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCCEEEEEEHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--cCCEEEEEcCccCCccccchhHhHhcCCCceEE--EEChhhhCCCcceEEEEEcHHHHHHhh
Confidence 86 8999999999 9999999999873221 112222346777 557899775 36899999999988874
Q ss_pred cCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc
Q 017726 224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE 302 (367)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 302 (367)
......+ ..+. .++.+...+++..++++.+.+++ ..++..++.+++++.|+++ .++.+..-.
T Consensus 327 ~~~~~~~-----------~~~~--t~~~n~~a~aaa~aaL~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~v~~vr- 389 (457)
T 3tfu_A 327 AGAAGAL-----------MHGP--TFMANPLACAVSVASVELLLGQD---WRTRITELAAGLTAGLDTARALPAVTDVR- 389 (457)
T ss_dssp HSSSCSC-----------CCCC--TTTTCHHHHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHGGGGGSTTEEEEE-
T ss_pred ccCCCce-----------eEec--CCCcCHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHhcCCCeeeee-
Confidence 2111100 1122 34567777777777888776653 4557778888999998876 332222111
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
..+.++++.+++..+..++++.|.++ ||.+++. ++.+|+++....+++++
T Consensus 390 -~~G~~~~i~l~~~~~~~~~~~~l~~~-Gv~v~~~-----~~~lRi~p~~~~t~eei 439 (457)
T 3tfu_A 390 -VCGAIGVIECDRPVDLAVATPAALDR-GVWLRPF-----RNLVYAMPPYICTPAEI 439 (457)
T ss_dssp -ECSSCEEEEESSCCCHHHHHHHHHHT-TEECCCB-----TTEEEECCCTTCCHHHH
T ss_pred -cCCeEEEEEECCcccHHHHHHHHHHC-CeEEEec-----CCEEEEECCCCCCHHHH
Confidence 13456777876656678999999866 9998862 36899986555554433
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=195.09 Aligned_cols=302 Identities=12% Similarity=0.041 Sum_probs=195.4
Q ss_pred hHHHHHHHccCCCC--CCC--CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC-CCCeEEEEeCCcc
Q 017726 21 PDQVIRAMNRNNED--YRS--PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS-PGDRIISFLIGQF 95 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~-~gd~vl~~~~~~~ 95 (367)
++.+.+++.+.... +.+ ........++++.++++++.+.+++|++++||++|+..++..+.. +|++|++.+|.|+
T Consensus 61 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh 140 (419)
T 2eo5_A 61 HPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFH 140 (419)
T ss_dssp CHHHHHHHHHHHTTSCCCSCSCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCC
T ss_pred CHHHHHHHHHHHhhCccccccccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcC
Confidence 57788887764322 111 112355678999999999986234699999999999998875432 3899999999887
Q ss_pred hHHHHHHHHHh-------------CCceEEEeCCCCCC----------------CCHHHHH-HHHhccCC-CCccEEEEE
Q 017726 96 SLLWIDQQQRL-------------NFNVDVVESDWGEG----------------AKLDVLA-SKLAADTA-HTIKAICIV 144 (367)
Q Consensus 96 ~~~~~~~~~~~-------------g~~~~~v~~~~~~~----------------~d~e~l~-~~i~~~~~-~~~~lv~~~ 144 (367)
+.... ..... ..++..++.+.++. +|+++++ +++++... +++++|+++
T Consensus 141 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~ 219 (419)
T 2eo5_A 141 GRTFG-SISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFE 219 (419)
T ss_dssp CSSHH-HHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEEC
T ss_pred CCCHh-hHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEe
Confidence 64321 11111 13577787765432 3678999 88874210 145566655
Q ss_pred ecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeec-cCce----eeccccccceEEEecCCCcccCC-Ccceeeee
Q 017726 145 HNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSS-ICAI----DFRMDEWGIDVALTGSQKALSLP-TGMGIVCA 214 (367)
Q Consensus 145 ~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~-~~~~----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~ 214 (367)
..+|+||.+.+ +++|.++|++ +|+++|+|++|+ ++.. .++......|++ +++|+++++ .++|++++
T Consensus 220 p~~~~tG~~~~~~~~l~~l~~l~~~--~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~G~~riG~~~~ 295 (419)
T 2eo5_A 220 PIQGEGGYVIPPKNFFAELQKLAKK--YGILLVDDEVQMGLGRTGKLFAIENFNTVPDVI--TLAKALGGGIMPIGATIF 295 (419)
T ss_dssp SSBTTTTSBCCCTTHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTTSCCEEEEE
T ss_pred CccCCCCCccCCHHHHHHHHHHHHH--cCCEEEEeccccCCccCcchhhHHhcCCCCCEE--EecccccCCccceEEEEE
Confidence 55567898766 9999999999 999999999997 3211 122222345766 467999765 67899999
Q ss_pred CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCC
Q 017726 215 SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGL 294 (367)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~ 294 (367)
+++++ .+ ... ..+ +++.+...+.+..++++.+.+ ..++++++++++.+.|+++ +
T Consensus 296 ~~~~~-~~-~~~---------------~~~---t~~~n~~~~~aa~aal~~~~~-----~~~~~~~~~~~l~~~L~~~-~ 349 (419)
T 2eo5_A 296 RKDLD-FK-PGM---------------HSN---TFGGNALACAIGSKVIDIVKD-----LLPHVNEIGKIFAEELQGL-A 349 (419)
T ss_dssp EGGGC-CC-------------------------CCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTS-S
T ss_pred chHhh-cC-Ccc---------------cCC---CCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHh-h
Confidence 98875 44 210 011 334667666777777776443 6778889999999999776 3
Q ss_pred ccccCCCccCCCceEEEEcC-CCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHH--HHHHhhh
Q 017726 295 KNCTQKEEWFSDTVTAVIVP-SHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV--MFNFQLL 364 (367)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~--~~~~~~l 364 (367)
....+ . +.++++.+. +..... +++.|. ++||.+.++. ++++||++....+++ +...+.|
T Consensus 350 ~~~~~----~-g~~~~i~~~~~~~~~~-~~~~l~-~~Gv~v~~~~----~~~lRis~~~~~t~e~i~~~l~~l 411 (419)
T 2eo5_A 350 DDVRG----I-GLAWGLEYNEKKVRDR-IIGESF-KRGLLLLPAG----RSAIRVIPPLVISEEEAKQGLDIL 411 (419)
T ss_dssp SEEEE----E-TTEEEEECSCHHHHHH-HHHHHH-HTTEECEEET----TTEEEECCCTTCCHHHHHHHHHHH
T ss_pred hheEe----e-eEEEEEEEecCccHHH-HHHHHH-HCCCEEecCC----CCEEEEECCCCCCHHHHHHHHHHH
Confidence 22222 2 346667772 111245 888887 4599998753 468999764444443 4334444
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=194.58 Aligned_cols=158 Identities=15% Similarity=0.101 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEE-eCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVV-ESDWG 118 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v-~~~~~ 118 (367)
....++++.+++++|.+. .++++||++|+..++.+++.+||+|+++.+.|++.. +...++..|++++.+ +.+
T Consensus 58 ~~~~~l~~~la~~~g~~~---~v~~~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-- 132 (421)
T 2ctz_A 58 PTVDVLEKRLAALEGGKA---ALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE-- 132 (421)
T ss_dssp HHHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTC--
T ss_pred hHHHHHHHHHHHHhCCCc---eEEecCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCC--
Confidence 567899999999999763 355567799999999988899999999999988864 333357789999888 654
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeee-ccCceeeccccccceEEEe
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVS-SICAIDFRMDEWGIDVALT 197 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~-~~~~~~~~~~~~~~d~~~~ 197 (367)
|+++++++++ +++++|++++++||+|.+.|+++|.++|++ +|+++|+|++| +.+.. ......++|++++
T Consensus 133 ---d~~~l~~~i~----~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~--~g~~livD~~~~~~g~~-~~~~~~~~Di~~~ 202 (421)
T 2ctz_A 133 ---RPEEFLALTD----EKTRAWWVESIGNPALNIPDLEALAQAARE--KGVALIVDNTFGMGGYL-LRPLAWGAALVTH 202 (421)
T ss_dssp ---CHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHH--HTCEEEEECGGGGGGTS-CCGGGGTCSEEEE
T ss_pred ---CHHHHHHhhc----cCCeEEEEECCCCCCCcccCHHHHHHHHHH--cCCEEEEECCccccccc-CCccccCCeEEEE
Confidence 7999999997 477999999999999999999999999999 99999999999 76532 2223457899999
Q ss_pred cCCCcccCCCc-ceeeee
Q 017726 198 GSQKALSLPTG-MGIVCA 214 (367)
Q Consensus 198 s~~K~~~g~~g-~g~~~~ 214 (367)
|++|+++++.+ +|++++
T Consensus 203 s~~K~l~~~g~~~G~~~~ 220 (421)
T 2ctz_A 203 SLTKWVGGHGAVIAGAIV 220 (421)
T ss_dssp ETTTTTTCSSCCCCEEEE
T ss_pred CCcccccCCCCcEEEEEE
Confidence 99999986543 565555
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-23 Score=189.84 Aligned_cols=282 Identities=12% Similarity=0.079 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHH-HHHhCCceEEEeCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQ-QQRLNFNVDVVESDW 117 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~-~~~~g~~~~~v~~~~ 117 (367)
.+...++++.++++.|.+ .+++++||++|+.. +.+++.+||+|++..+.|++.. +... .+..|+++..++.+
T Consensus 66 ~p~~~~l~~~la~l~g~~---~~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 140 (400)
T 3nmy_A 66 NPTRFAYERCVAALEGGT---RAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLT- 140 (400)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTT-
T ss_pred CHHHHHHHHHHHHHhCCC---CEEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCC-
Confidence 366789999999999865 25677888999998 5678899999999999887653 3333 56679999999875
Q ss_pred CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEe
Q 017726 118 GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALT 197 (367)
Q Consensus 118 ~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~ 197 (367)
|+++++++++ +++++|++++|+||+|.+.|+++|.++|++ +|+++|+|++++.+... .....++|+++.
T Consensus 141 ----d~~~l~~~i~----~~~~~v~~e~~~np~G~~~~l~~i~~la~~--~g~~livDe~~~~~~~~-~~~~~g~div~~ 209 (400)
T 3nmy_A 141 ----DPAAFKAAIR----ADTKMVWIETPTNPMLKLVDIAAIAVIARK--HGLLTVVDNTFASPMLQ-RPLSLGADLVVH 209 (400)
T ss_dssp ----SHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHH--TTCEEEEECTTTHHHHC-CGGGGTCSEEEE
T ss_pred ----CHHHHHHHhc----cCCCEEEEECCCCCCCeeecHHHHHHHHHH--cCCEEEEECCCcccccC-ChhhcCCcEEEe
Confidence 8999999997 467999999999999999999999999999 99999999998754322 222347999999
Q ss_pred cCCCcccCCC-cc-e--eeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHH
Q 017726 198 GSQKALSLPT-GM-G--IVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLEN 273 (367)
Q Consensus 198 s~~K~~~g~~-g~-g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~ 273 (367)
|++|+++|+. .+ | ++..++++.+++.... .. .+. +.+.... ..++..+ ..+..
T Consensus 210 S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~-------------~~-~g~----~~~~~~a---~~~l~~l--~~l~~ 266 (400)
T 3nmy_A 210 SATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQ-------------NS-IGG----VQGPFDS---FLALRGL--KTLPL 266 (400)
T ss_dssp ETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHH-------------HH-HCC----BCCHHHH---HHHHHHH--TTHHH
T ss_pred cCccccCCCCCcceeEEEEeCCHHHHHHHHHHH-------------Hh-cCC----CCCHHHH---HHHHHhH--hHHHH
Confidence 9999998662 23 5 3344677766665320 00 111 2333222 2222222 22566
Q ss_pred HHHHHHHHHHHHHHHHHHc-CCccc-cCCC-c-----------cCCCceEEEEcCCCC-CHHHHHHHHHhhCCeEEccCC
Q 017726 274 VIERHRRLGKATRLAVEAW-GLKNC-TQKE-E-----------WFSDTVTAVIVPSHI-NSSEIVRRAWQRYNLSLGLGL 338 (367)
Q Consensus 274 ~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~-~-----------~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~v~~g~ 338 (367)
+.++..+++..+.+.|++. .+..+ .|.- . ...+.+++|.++.+. ....+++.|. ..++.+..|.
T Consensus 267 r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~l~-~~~~~~s~G~ 345 (400)
T 3nmy_A 267 RMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTE-LFTLAESLGG 345 (400)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHCS-SSEECSCCCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHcCC-cceEecCCCC
Confidence 7778899999999999886 43322 2210 0 123568889884221 1334555442 3343333331
Q ss_pred C-----------------------CCCCcEEEEeecCCCCHHHHHHhh
Q 017726 339 N-----------------------KVAGKVFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 339 ~-----------------------~~~~~~iRi~~~~~~~~~~~~~~~ 363 (367)
. ...+..+|+| .+..+.+|+...+
T Consensus 346 ~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRls-vGle~~~dli~dl 392 (400)
T 3nmy_A 346 VESLVNHPAVMTHASIPVARREQLGISDALVRLS-VGIEDLGDLRGDL 392 (400)
T ss_dssp SSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEE-CCSSCHHHHHHHH
T ss_pred CcceeeCccccccccCCHHHHHhcCCCcCeEEEE-eCcCCHHHHHHHH
Confidence 1 0124579999 5777777766543
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=202.62 Aligned_cols=289 Identities=13% Similarity=0.096 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCC-----C----CeEEEEeCCcchHHHHHHHHHhCCceE
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSP-----G----DRIISFLIGQFSLLWIDQQQRLNFNVD 111 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~-----g----d~vl~~~~~~~~~~~~~~~~~~g~~~~ 111 (367)
.....+++++++++++.+ .+++|+||++|+..++.++..+ | |.|++. +.|+... .......|..+.
T Consensus 73 ~~~~~~l~~~la~~~~~~---~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~-~~h~~t~-~~~~~~~~~~~~ 147 (467)
T 2oqx_A 73 SRSYYALAESVKNIFGYQ---YTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFS-NYFFDTT-QGHSQINGCTVR 147 (467)
T ss_dssp CHHHHHHHHHHHHHHCCS---EEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEE-SSCCHHH-HHHHHHTTCEEE
T ss_pred CchhHHHHHHHHHHhCcC---cEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEec-ccccccc-hhhhhccCccee
Confidence 356679999999999863 4899999999999999887777 8 887766 5454432 223344566554
Q ss_pred EEe------CC----CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCc-ccccc---HHHHHHHHHhcCCCcEEEEeee
Q 017726 112 VVE------SD----WGEGAKLDVLASKLAADTAHTIKAICIVHNETAT-GVTNN---LSKVRKLLDEYRHPALFLVDGV 177 (367)
Q Consensus 112 ~v~------~~----~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~t-G~~~~---~~~i~~~~~~~~~~~~vi~D~~ 177 (367)
... .+ .++.+|+++|++++++...+++++|++++++||+ |.+++ +++|.++|++ ||+++|+|++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~--~gi~li~D~a 225 (467)
T 2oqx_A 148 NVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK--YDIPVVMDSA 225 (467)
T ss_dssp ECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH--TTCCEEEECT
T ss_pred eccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHH--cCCEEEEEch
Confidence 431 11 3456899999999985211257999999999998 77765 7789999999 9999999976
Q ss_pred ecc-C----------ceeecccc------ccceEEEecCCCcccCCCcceeeeeCHH-HHH---HhccCCCCceeechHH
Q 017726 178 SSI-C----------AIDFRMDE------WGIDVALTGSQKALSLPTGMGIVCASPK-ALE---ASKTAKSVRVFFDWKD 236 (367)
Q Consensus 178 ~~~-~----------~~~~~~~~------~~~d~~~~s~~K~~~g~~g~g~~~~~~~-~~~---~~~~~~~~~~~~~~~~ 236 (367)
+.. + ....+... ...|++++|+||+++.+.| |+++++++ +++ ++....
T Consensus 226 ~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~~~~~~~~~~~~~~~~---------- 294 (467)
T 2oqx_A 226 RFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFFDVYTECRTLC---------- 294 (467)
T ss_dssp THHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGHHHHHHHHHHH----------
T ss_pred hhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCCCc-eEEEecChhHHHHHHHHHHhh----------
Confidence 654 1 11111111 2468889999999965545 77777766 333 332110
Q ss_pred HHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC
Q 017726 237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGL-ENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS 315 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~-~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 315 (367)
.+..+.....+.+...+.++..++ .+ .+ ++..++..++++++.+.|++.|+++. + ..+.++++.+++
T Consensus 295 ---~~~~~~~~~~~~~~~~~~al~~~l---~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~----~~~~~~~~~~~~ 362 (467)
T 2oqx_A 295 ---VVQEGFPTYGGLEGGAMERLAVGL---YD-GMNLDWLAYRIAQVQYLVDGLEEIGVVCQ-Q----AGGHAAFVDAGK 362 (467)
T ss_dssp ---HHTTSSCCCCCCCHHHHHHHHHHH---HH-TTCHHHHHHHHHHHHHHHHHHHHTTCCEE-E----ECSSCEEEEHHH
T ss_pred ---hccCCcccccchhhhHHHHHHHhh---Hh-hhhHHHHHHHHHHHHHHHHHHHHCCCeee-c----CCceEEEEechh
Confidence 000011111223333322332222 21 12 23445567889999999998887776 4 244567777731
Q ss_pred ---CCC-----HHHHHHHHHhhCCeEEccCCC------CC-------CCcEEEEeecCC-CCHHHH
Q 017726 316 ---HIN-----SSEIVRRAWQRYNLSLGLGLN------KV-------AGKVFRIGHLGH-LNEVMF 359 (367)
Q Consensus 316 ---~~~-----~~~l~~~L~~~~gv~v~~g~~------~~-------~~~~iRi~~~~~-~~~~~~ 359 (367)
+.+ ..++++.|.++.||.+.++.. +. ..+++|+++... .+++++
T Consensus 363 ~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i 428 (467)
T 2oqx_A 363 LLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHM 428 (467)
T ss_dssp HSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHH
T ss_pred hcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHH
Confidence 334 344588884445999987321 10 126899998755 555443
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-25 Score=203.60 Aligned_cols=265 Identities=8% Similarity=-0.009 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHhc------CCCCceEEecCChhHHHHHHHHcc--------CCCCCeEEEEeCCcchHHHHHHHHHhCCc
Q 017726 44 TKTLLEDIKKIFK------TTSGTPFLIPTTGTGAWESALTNT--------LSPGDRIISFLIGQFSLLWIDQQQRLNFN 109 (367)
Q Consensus 44 ~~~~~~~la~~~~------~~~~~~v~~~~ggt~al~~~~~~~--------~~~gd~vl~~~~~~~~~~~~~~~~~~g~~ 109 (367)
..++|+.++++++ .+ +++|++|+|+++++.+++.++ +.+||.|+++.|.|.++. ..++..|.+
T Consensus 102 ~~~lr~aia~~~~~~~~~~~~-~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~--~~~~~~g~~ 178 (427)
T 2hox_A 102 SFELEKTIKELHEVVGNAAAK-DRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFR--EQTKYFDKK 178 (427)
T ss_dssp CHHHHHHHHHHHHHHTCBCCT-TCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHH--HHHHHSCBT
T ss_pred hHHHHHHHHHHHHHhCCcCCC-CCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHH--HHHHHcCCe
Confidence 5788999998886 33 346999999999999999998 899999999999776543 556778888
Q ss_pred eEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCcee-eccc
Q 017726 110 VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID-FRMD 188 (367)
Q Consensus 110 ~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-~~~~ 188 (367)
++.. .+|+++++++++ +++|+|++++|+||||.+++ + +++ ++..++|+.+...... ..+.
T Consensus 179 ~~~~------~~d~~~l~~~~~----~~~k~v~l~~p~NPtG~~~~-~----~l~----~~~~i~d~~~~~~~~s~~~~~ 239 (427)
T 2hox_A 179 GYVW------AGNAANYVNVSN----PEQYIEMVTSPNNPEGLLRH-A----VIK----GCKSIYDMVYYWPHYTPIKYK 239 (427)
T ss_dssp TEEE------EEEGGGGTTCSC----GGGEEEEEESSCTTTCCCCC-C----SST----TCEEEEECTTCSTTTSCCCSC
T ss_pred eeee------cCCHHHHHHhhc----CCceEEEEcCCCCCcccccH-H----HHc----CCCEEEeecccCCCCCccccC
Confidence 7643 357888887776 36799999999999999999 3 333 3467788765321111 1221
Q ss_pred cccceEEEecCCCcccCCCc--ceeeee-CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHH
Q 017726 189 EWGIDVALTGSQKALSLPTG--MGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL 265 (367)
Q Consensus 189 ~~~~d~~~~s~~K~~~g~~g--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~ 265 (367)
.+.+++++|+||.++ ++| +|++++ ++++++++..... . . .++.+.....++..++..
T Consensus 240 -~~~~i~~~S~SK~~g-~~G~RiG~~~~~~~~l~~~l~~~~~-------------~--~---~~~~~~~~q~a~~~~L~~ 299 (427)
T 2hox_A 240 -ADEDILLFTMSKFTG-HSGSRFGWALIKDESVYNNLLNYMT-------------K--N---TEGTPRETQLRSLKVLKE 299 (427)
T ss_dssp -BCCSEEEEEHHHHTS-CGGGCCEEEEECCHHHHHHHHHHHH-------------H--H---TSSCCHHHHHHHHHHHHH
T ss_pred -CCceEEEEeChhcCC-CCCceEEEEEECCHHHHHHHHHHHH-------------h--c---CCCCCHHHHHHHHHHhhc
Confidence 367999999999884 556 699999 5888887764210 0 0 112444333344445543
Q ss_pred HHH---------hC-hHHHHHHHHHHHHHHHHHHHHc-CCcc--cc-CCC-------ccCCCceEEEEcCCCCCHHHHHH
Q 017726 266 IFE---------EG-LENVIERHRRLGKATRLAVEAW-GLKN--CT-QKE-------EWFSDTVTAVIVPSHINSSEIVR 324 (367)
Q Consensus 266 ~~~---------~g-~~~~~~~~~~~~~~l~~~L~~~-g~~~--~~-~~~-------~~~~~~~~~~~~~~~~~~~~l~~ 324 (367)
..+ .. +++.++++.++++++.+.|+++ |+.+ +. +.. ...++.+++++++. +..++++
T Consensus 300 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~--~~~~~~~ 377 (427)
T 2hox_A 300 VVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW--EEDKDCY 377 (427)
T ss_dssp HHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS--GGGCSHH
T ss_pred chhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCC--cHHHHHH
Confidence 221 11 5567788899999999999987 7765 22 210 11346678888853 4567888
Q ss_pred HHHhhCCeEEccCCCCC-CCcEEEEeecC
Q 017726 325 RAWQRYNLSLGLGLNKV-AGKVFRIGHLG 352 (367)
Q Consensus 325 ~L~~~~gv~v~~g~~~~-~~~~iRi~~~~ 352 (367)
.|.+++||.+++|..+. ..++||||+..
T Consensus 378 ~ll~~~gI~v~pg~~f~~~~~~~Ris~~~ 406 (427)
T 2hox_A 378 QTFQNGRINTQNGVGFEASSRYVRLSLIK 406 (427)
T ss_dssp HHHHHTTEECEEGGGGTSCTTEEEEECSS
T ss_pred HHHHHCCEEEcCCCccCCCCCEEEEEecC
Confidence 88767799999985443 35789999765
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-24 Score=199.60 Aligned_cols=304 Identities=14% Similarity=0.118 Sum_probs=194.0
Q ss_pred ChHHHHHHHccCCCC---CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC--CCCeEEEEeCCc
Q 017726 20 IPDQVIRAMNRNNED---YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS--PGDRIISFLIGQ 94 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~--~gd~vl~~~~~~ 94 (367)
.++++.+++.+.... ..++ .....+++++++++++ . .+.+++++||++|+..++..... ++++|++..+.|
T Consensus 72 ~~p~v~~a~~~~~~~~~~~~~~--~~~~~~l~~~la~~~~-~-~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~y 147 (434)
T 3l44_A 72 AHPHITKAITTAAENGVLYGTP--TALEVKFAKMLKEAMP-A-LDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCY 147 (434)
T ss_dssp TCHHHHHHHHHHHHHCSCCSSC--CHHHHHHHHHHHHHCT-T-CSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCC
T ss_pred CCHHHHHHHHHHHHhCcCCCCC--CHHHHHHHHHHHHhCC-C-CCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCcc
Confidence 367777777764322 2222 3566789999999987 3 34699999999999999876543 678999999988
Q ss_pred chHHHHHHHHHhCC-------------------ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc
Q 017726 95 FSLLWIDQQQRLNF-------------------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN 155 (367)
Q Consensus 95 ~~~~~~~~~~~~g~-------------------~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~ 155 (367)
++.... .....|. .+..++.+ |++++++++++.+ +++++|++++++|++|.+.+
T Consensus 148 hg~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~-~~~~~vi~ep~~~~~G~~~~ 220 (434)
T 3l44_A 148 HGHSDL-VLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFN-----NVETLKEALDKWG-HEVAAILVEPIVGNFGIVEP 220 (434)
T ss_dssp CCSSGG-GGBC-------CCCBSSTTCCHHHHTTEEEECTT-----CHHHHHHHHHHHG-GGEEEEEECSSBCTTSCBCC
T ss_pred CCCcHH-HHhhcCCcccccCCCCcCCCCCcCCCceEecCcc-----cHHHHHHHHHhCC-CCEEEEEEcCCCCCCCCccC
Confidence 764311 0111111 23333322 7999999998543 35677888777788888887
Q ss_pred ----HHHHHHHHHhcCCCcEEEEeeeeccC---ce-eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCC
Q 017726 156 ----LSKVRKLLDEYRHPALFLVDGVSSIC---AI-DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS 227 (367)
Q Consensus 156 ----~~~i~~~~~~~~~~~~vi~D~~~~~~---~~-~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~ 227 (367)
+++|.++|++ +|+++|+|++|... .. ..+......|+++ ++|.++++.++|++++++++++.+.....
T Consensus 221 ~~~~l~~l~~l~~~--~~illI~DEv~~g~~~g~~~~~~~~~~~~di~t--~sK~~~~G~~iG~~~~~~~i~~~~~~~~~ 296 (434)
T 3l44_A 221 KPGFLEKVNELVHE--AGALVIYDEVITAFRFMYGGAQDLLGVTPDLTA--LGKVIGGGLPIGAYGGKKEIMEQVAPLGP 296 (434)
T ss_dssp CTTHHHHHHHHHHT--TTCEEEEECTTTTTTSSSSCHHHHHTCCCSEEE--EEGGGGTTSSCEEEEECHHHHTTBTTTSS
T ss_pred CHHHHHHHHHHHHH--cCCEEEEeccccceeccccHHHHHcCCCCCeee--hhhhhcCCcCeeeEEEcHHHHHhhccCCC
Confidence 9999999999 99999999999732 11 0112223456665 46888766678999999999877653210
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc----CCccccCCCcc
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEW 303 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~ 303 (367)
. ..+. +++.+...+++..++++.+.++ +..++..++.+++++.|+++ ++....+
T Consensus 297 --~-----------~~~~--t~~~~~~a~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---- 354 (434)
T 3l44_A 297 --A-----------YQAG--TMAGNPASMASGIACLEVLQQE---GLYEKLDELGATLEKGILEQAAKHNIDITLN---- 354 (434)
T ss_dssp --B-----------CCCC--TTTTCHHHHHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHHHTTCCEEEE----
T ss_pred --c-----------ccCC--CCCcCHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHHHHHHhCCCCEEEE----
Confidence 0 0121 4456776667777777766553 34556666777777777663 3211111
Q ss_pred CCCceEEEEcCCC-C------------CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 304 FSDTVTAVIVPSH-I------------NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 304 ~~~~~~~~~~~~~-~------------~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
..+.++.+.+.+. . ...++.+.|.++ ||.++++.. ..+|+++....++.+...++|+
T Consensus 355 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~----~~~rl~~~~t~e~i~~~l~~l~ 424 (434)
T 3l44_A 355 RLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQE-GVNLAPSKY----EAWFLTTEHTKEDIEYTIEAVG 424 (434)
T ss_dssp EETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHT-TEECCSSTT----CCEECCTTCCHHHHHHHHHHHH
T ss_pred eeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHC-CeEEeecCC----CcEEEecccCHHHHHHHHHHHH
Confidence 1334566655221 1 125688888765 999987632 4589875445455555555544
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-22 Score=189.95 Aligned_cols=310 Identities=15% Similarity=0.059 Sum_probs=190.9
Q ss_pred hHHHHHHHccCCCC--C--CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC----C----CCeEE
Q 017726 21 PDQVIRAMNRNNED--Y--RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS----P----GDRII 88 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~--~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~----~----gd~vl 88 (367)
++++.+++.+.... + ......+...+++++++++++... +.+++++||++|+..++..... + +++|+
T Consensus 62 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi 140 (448)
T 3dod_A 62 KKELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLIDISPKKL-TRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFI 140 (448)
T ss_dssp CHHHHHHHHHHHTTCSCCCCSSSEEHHHHHHHHHHHHHSCTTE-EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCC-CEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEE
Confidence 56677776664322 1 112234567789999999986543 4699999999999999987654 4 49999
Q ss_pred EEeCCcchHHHHHHHHHhC------------CceEEEeCCCCCCC-----------CHHHHHHHHhccCCCCccEEEEEe
Q 017726 89 SFLIGQFSLLWIDQQQRLN------------FNVDVVESDWGEGA-----------KLDVLASKLAADTAHTIKAICIVH 145 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~-----------d~e~l~~~i~~~~~~~~~lv~~~~ 145 (367)
+..+.|++...... ...+ ..+..++.+...+. |++++++++++.. +++++|+++.
T Consensus 141 ~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~a~vi~ep 218 (448)
T 3dod_A 141 AMKNGYHGDTIGAV-SVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHH-EEIAALSIES 218 (448)
T ss_dssp EEC------------------------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHG-GGEEEEEEES
T ss_pred EECCCCCCccHHHH-HhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCC-CCEEEEEEeC
Confidence 99998877542111 1111 23445555433322 4789999987432 3567888888
Q ss_pred cC-CCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCC-Ccceeeee
Q 017726 146 NE-TATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLP-TGMGIVCA 214 (367)
Q Consensus 146 ~~-n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~ 214 (367)
++ |++|.+.+ +++|+++|++ ||+++|+|++|+.... .........|++++ +|.++++ .++|++++
T Consensus 219 ~~~~~~G~~~~~~~~l~~l~~l~~~--~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~--sK~l~~G~~~ig~v~~ 294 (448)
T 3dod_A 219 MVQGASGMIVMPEGYLAGVRELCTT--YDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAA--GKGITGGYLPIAVTFA 294 (448)
T ss_dssp SEESTTTCEECCTTHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTTSSCCEEEEE
T ss_pred cccCCCCeecCCHHHHHHHHHHHHH--hCCEEEEeccccCCCcccchhhhhhcCCCCCEEEe--cccccCCcCceEEEEE
Confidence 87 89997776 8999999999 9999999999873211 12222234576654 6999765 36799999
Q ss_pred CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-C
Q 017726 215 SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-G 293 (367)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g 293 (367)
++++++.+......... +..+. .++.+...+++..++++.+.+++ ..++.+++.+++++.|+++ +
T Consensus 295 ~~~~~~~~~~~~~~~~~---------~~~~~--t~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~~~~~l~~l~~ 360 (448)
T 3dod_A 295 TEDIYKAFYDDYENLKT---------FFHGH--SYTGNQLGCAVALENLALFESEN---IVEQVAEKSKKLHFLLQDLHA 360 (448)
T ss_dssp EHHHHHTTCSCGGGCCC---------CCCCC--TTTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHhhhccccCCc---------ccccC--CCCcCHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHhc
Confidence 99998877641000000 00111 34566666677777887776643 4556666777777777664 3
Q ss_pred CccccCCCccCCCceEEEEcCCCCC-----------HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 294 LKNCTQKEEWFSDTVTAVIVPSHIN-----------SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
+.....-. ..+.++++.+++..+ ..++++.|.++ ||.+.++ +.++|+++....+++++
T Consensus 361 ~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~-----~~~iRi~~~~~~t~e~i 429 (448)
T 3dod_A 361 LPHVGDIR--QLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMREL-GMLTRPL-----GDVIAFLPPLASTAEEL 429 (448)
T ss_dssp STTEEEEE--EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECCEE-----TTEEEECCCTTCCHHHH
T ss_pred CCCeEEEE--eeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHC-CcEEecc-----CCEEEEECCCCCCHHHH
Confidence 33222100 134466777754322 36788888765 9999875 37899976555554433
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-23 Score=191.77 Aligned_cols=310 Identities=13% Similarity=0.101 Sum_probs=199.2
Q ss_pred hHHHHHHHccCCCC--C--CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC--CCCCeEEEEeCCc
Q 017726 21 PDQVIRAMNRNNED--Y--RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--SPGDRIISFLIGQ 94 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~--~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~--~~gd~vl~~~~~~ 94 (367)
++.+.+++.+.... + .++ ......++++.++++++.+. ++|++++||++|+..++.... ..+++|++.++.|
T Consensus 61 ~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~~~-~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~y 138 (433)
T 1zod_A 61 HPEIVSVIGEYAGKLDHLFSEM-LSRPVVDLATRLANITPPGL-DRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSW 138 (433)
T ss_dssp CHHHHHHHHHHHHHCCCCCTTC-CCHHHHHHHHHHHHHSCTTC-CEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCC
T ss_pred CHHHHHHHHHHHHhCccccccc-CCHHHHHHHHHHHHhCCCCc-CEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCc
Confidence 66777777664321 1 111 12556789999999998764 469999999999999987532 2457899999988
Q ss_pred chHHHHHHHHHh-----------CCceEEEeCCCC----C--------CCCHHHHHHHHhccCCCCccEEEEEecCCCcc
Q 017726 95 FSLLWIDQQQRL-----------NFNVDVVESDWG----E--------GAKLDVLASKLAADTAHTIKAICIVHNETATG 151 (367)
Q Consensus 95 ~~~~~~~~~~~~-----------g~~~~~v~~~~~----~--------~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG 151 (367)
++..... .... ...+..++.+.. + .+|++++++++++...+++++|+++..+|++|
T Consensus 139 hg~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G 217 (433)
T 1zod_A 139 HGMTGAA-ASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGG 217 (433)
T ss_dssp CCSSHHH-HHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTT
T ss_pred CCCChhH-HhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCC
Confidence 7754211 1111 123455544321 1 13589999998752112567777665568899
Q ss_pred cccc----HHHHHHHHHhcCCCcEEEEeeeec-cCce----eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHh
Q 017726 152 VTNN----LSKVRKLLDEYRHPALFLVDGVSS-ICAI----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEAS 222 (367)
Q Consensus 152 ~~~~----~~~i~~~~~~~~~~~~vi~D~~~~-~~~~----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~ 222 (367)
.+.+ +++|.++|++ +|+++|+|++|+ ++.. .++......|++ |++|+++++.++|++++++++++.+
T Consensus 218 ~~~~~~~~l~~l~~l~~~--~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~--s~sK~~~~G~~ig~~~~~~~~~~~~ 293 (433)
T 1zod_A 218 IIELPDGYMAALKRKCEA--RGMLLILDEAQTGVGRTGTMFACQRDGVTPDIL--TLSKTLGAGLPLAAIVTSAAIEERA 293 (433)
T ss_dssp CEECCTTHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECHHHHTTSSCEEEEECHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHH--hCCEEEEeccccCCCcCchHhHHhhcCCCCCEE--EecccccCCCCeeEEEEhHHHHHhh
Confidence 8766 9999999999 999999999998 3311 112222345665 5679998655689999999998877
Q ss_pred ccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCC
Q 017726 223 KTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQK 300 (367)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~ 300 (367)
..... . .+. .++.+...+++..++++.+.+.+ ..++..++++++++.|+++ .+......
T Consensus 294 ~~~~~-------------~-~~~--t~~~~~~~~~a~~aal~~~~~~~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 354 (433)
T 1zod_A 294 HELGY-------------L-FYT--THVSDPLPAAVGLRVLDVVQRDG---LVARANVMGDRLRRGLLDLMERFDCIGDV 354 (433)
T ss_dssp HHTTC-------------C-CCC--TTTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred ccCCC-------------C-CCC--CCCcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 64210 0 011 33456666677778888776654 4567777888888888774 22222110
Q ss_pred CccCCCceEEEEcCCC--------CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 301 EEWFSDTVTAVIVPSH--------INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 301 ~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
. ..+.++++.+++. .+..++.+.|.+ .||.+.++.....++++||++....+++++
T Consensus 355 ~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i 418 (433)
T 1zod_A 355 R--GRGLLLGVEIVKDRRTKEPADGLGAKITRECMN-LGLSMNIVQLPGMGGVFRIAPPLTVSEDEI 418 (433)
T ss_dssp E--EETTEEEEEEEEETTTTEECTTHHHHHHHHHHH-TTEECCEECCTTSCCEEEECCCTTCCHHHH
T ss_pred E--EEEEEEEEEEecCccccCCChHHHHHHHHHHHH-CCCeEeccCCCCCCCEEEEECCcCCCHHHH
Confidence 1 1234666766421 236678998875 599999875432247899986555554443
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-22 Score=187.94 Aligned_cols=313 Identities=14% Similarity=0.050 Sum_probs=193.3
Q ss_pred hHHHHHHHccCCC----CCC-CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC--------CCCCeE
Q 017726 21 PDQVIRAMNRNNE----DYR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--------SPGDRI 87 (367)
Q Consensus 21 ~~~v~~a~~~~~~----~~~-~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~--------~~gd~v 87 (367)
++.+.+++.+... .+. .....+...+++++++++++... +.+++++||++|+..++..+. .+++.|
T Consensus 69 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~v 147 (460)
T 3gju_A 69 RQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAPKGM-SRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKI 147 (460)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSCTTE-EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEE
T ss_pred CHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhCCCCc-CEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 4666666665321 111 11223567789999999876554 469999999999999998765 356899
Q ss_pred EEEeCCcchHHHHHHHHHhC------------CceEEEeCCCCC-----CCC--------HHHHHHHHhccCCCCccEEE
Q 017726 88 ISFLIGQFSLLWIDQQQRLN------------FNVDVVESDWGE-----GAK--------LDVLASKLAADTAHTIKAIC 142 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~-----~~d--------~e~l~~~i~~~~~~~~~lv~ 142 (367)
++.++.|++...... ...+ ..+..++.+... ..+ +++|++++++...+++++|+
T Consensus 148 i~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii 226 (460)
T 3gju_A 148 ISRWRGYHGSGVMTG-SLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFI 226 (460)
T ss_dssp EEETTCCCCSSHHHH-HHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEE
T ss_pred EEECCCcCCCCHHHh-hccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999998887642211 1111 234556544311 122 58899988743213568888
Q ss_pred EEecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce---e--eccccccceEEEecCCCcccCC-Ccceee
Q 017726 143 IVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI---D--FRMDEWGIDVALTGSQKALSLP-TGMGIV 212 (367)
Q Consensus 143 ~~~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~---~--~~~~~~~~d~~~~s~~K~~~g~-~g~g~~ 212 (367)
++.++|++|.+.+ +++|+++|++ ||+++|+|++|+.... . .+......|++++ +|.++++ .++|++
T Consensus 227 ~ep~~~~~G~~~~~~~~l~~l~~l~~~--~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~--sK~l~gG~~~lg~v 302 (460)
T 3gju_A 227 GEPILGTGGIVPPPAGYWEKIQAVLKK--YDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITI--AKGLTSAYAPLSGV 302 (460)
T ss_dssp ECSSBSTTTSBCCCTTHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEE--CGGGTTTSSCCEEE
T ss_pred ECCccCCCCCccCCHHHHHHHHHHHHH--cCCEEEEeccccCCCcccccchHhhcCCCCCeeee--ehhhcCCCCCeEEE
Confidence 8888888888765 8999999999 9999999999873211 1 1222234577655 5999764 467999
Q ss_pred eeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc
Q 017726 213 CASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 292 (367)
++++++++.+..... ....+..+. .++.+...+++..++++.+.+++ ..++.+++.+++++.|.+.
T Consensus 303 ~~~~~i~~~~~~~~~---------~~~~~~~~~--t~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~~~~~l~~~ 368 (460)
T 3gju_A 303 IVADRVWQVLVQGSD---------KLGSLGHGW--TYSAHPICVAAGVANLELIDEMD---LVTNAGETGAYFRAELAKA 368 (460)
T ss_dssp EEEHHHHHHHHHHHH---------HHCSCSCCC--TTTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHhcccc---------cccccccCC--CCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHH
Confidence 999999888742100 000001121 44567767777777888776654 3344555555555555332
Q ss_pred --CCccccCCCccCCCceEEEEcCCCCC-----------HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 293 --GLKNCTQKEEWFSDTVTAVIVPSHIN-----------SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 293 --g~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
.+.....-. ..+.++.+.+.+... ..++.+.|.++ ||.++++. .++++||++....+.+++
T Consensus 369 l~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~---~~~~iRi~~~~~~t~e~i 442 (460)
T 3gju_A 369 VGGHKNVGEVR--GDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAAS-GVIGRAMP---QGDILGFAPPLCLTREQA 442 (460)
T ss_dssp HTTSTTEEEEE--EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECEECS---SSCEEEECCCTTCCHHHH
T ss_pred HhcCCCeEEEe--eeeEEEEEEEccCccccccccchHHHHHHHHHHHHHC-CeEEecCC---CCCEEEEECCCCCCHHHH
Confidence 222221100 123356666543211 45788888765 99998754 347899996555554433
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-22 Score=188.16 Aligned_cols=312 Identities=12% Similarity=0.052 Sum_probs=196.6
Q ss_pred hHHHHHHHccCCCC--C-CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC-----C---CCCeEEE
Q 017726 21 PDQVIRAMNRNNED--Y-RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-----S---PGDRIIS 89 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~-~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~-----~---~gd~vl~ 89 (367)
++++.+++.+.... + ......+...+++++++++++.+. + +++++||++|+..++..+. . ++++|++
T Consensus 67 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~ 144 (452)
T 3n5m_A 67 RKELAEAAYKQLQTLSYFPMSQSHEPAIKLAEKLNEWLGGEY-V-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMS 144 (452)
T ss_dssp CHHHHHHHHHHHTTCCCCCTTSEEHHHHHHHHHHHHHHTSCE-E-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEE
T ss_pred CHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHhCCCCc-e-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 56677776664332 1 112334667899999999998654 3 9999999999999998765 4 7889999
Q ss_pred EeCCcchHHHHHHHHHhCC------------ceEEEeCCCCCCC---C---------HHHHHHHHhccCCCCccEEEEEe
Q 017726 90 FLIGQFSLLWIDQQQRLNF------------NVDVVESDWGEGA---K---------LDVLASKLAADTAHTIKAICIVH 145 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~---d---------~e~l~~~i~~~~~~~~~lv~~~~ 145 (367)
.++.|++..... ....|. .+..++....... | +++|++++++...+++++|++++
T Consensus 145 ~~~~yhg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep 223 (452)
T 3n5m_A 145 RYRGYHGNTMAT-MAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEP 223 (452)
T ss_dssp ETTCCCCSSHHH-HHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECS
T ss_pred ECCCcCCCCHHH-HhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEcc
Confidence 999888754221 111121 2344443221111 2 89999999721114568888888
Q ss_pred c-CCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCC-Ccceeeee
Q 017726 146 N-ETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLP-TGMGIVCA 214 (367)
Q Consensus 146 ~-~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~ 214 (367)
+ +| +|.+.+ +++|+++|++ ||+++|+|++|..... ..+......|++++ +|.++++ .++|++++
T Consensus 224 ~~~n-~G~~~~~~~~l~~l~~l~~~--~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~--sK~l~~G~~~ig~~~~ 298 (452)
T 3n5m_A 224 IITG-GGILMAPQDYMKAVHETCQK--HGALLISDEVICGFGRTGKAFGFMNYDVKPDIITM--AKGITSAYLPLSATAV 298 (452)
T ss_dssp SBTT-TTCBCCCTTHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEE--CGGGGTTSSCCEEEEE
T ss_pred ccCC-CCeeeCCHHHHHHHHHHHHH--cCCEEEEecchhCCCcccccchhhhcCCCCCEEee--cccccCCCcceEEEEE
Confidence 8 89 998886 9999999999 9999999999873211 12222234677654 6888665 56899999
Q ss_pred CHHHHHHhccCC-CCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-
Q 017726 215 SPKALEASKTAK-SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW- 292 (367)
Q Consensus 215 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~- 292 (367)
++++++.+.... ...+. .+. .++.+...+++..++++.+.+++ ..++..++.+++++.|+++
T Consensus 299 ~~~i~~~~~~~~~~~~~~-----------~~~--t~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~L~~~~ 362 (452)
T 3n5m_A 299 KREIYEAFKGKGEYEFFR-----------HIN--TFGGNPAACALALKNLEIIENEN---LIERSAQMGSLLLEQLKEEI 362 (452)
T ss_dssp EHHHHGGGCSSSTTCSCC-----------CCC--SSTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhccCCCCcc-----------ccC--CCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHH
Confidence 999988775310 00000 121 34566666677777787776643 4456677777777777764
Q ss_pred -CCccccCCCccCCCceEEEEcCCCCC---------HHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeecCCCCHHHH
Q 017726 293 -GLKNCTQKEEWFSDTVTAVIVPSHIN---------SSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 293 -g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~L~~~~gv~v~~g~~--~~~~~~iRi~~~~~~~~~~~ 359 (367)
++.....-. ..+.++.+.+.+... ..++++.|.++ ||.+.++.. +..++++||++....+++++
T Consensus 363 ~~~~~~~~~~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i 438 (452)
T 3n5m_A 363 GEHPLVGDIR--GKGLLVGIELVNDKETKEPIDNDKIASVVNACKEK-GLIIGRNGMTTAGYNNILTLAPPLVISSEEI 438 (452)
T ss_dssp TTCTTEEEEE--ESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHT-TEECEECTTSSTTCCCEEEECCCTTCCHHHH
T ss_pred hcCCCeEEEE--EEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHC-CcEEeecCcccCCCCCEEEEECCCCCCHHHH
Confidence 333222101 122344454421111 24688888755 999998643 22357899986555554443
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.4e-23 Score=190.27 Aligned_cols=306 Identities=14% Similarity=0.062 Sum_probs=195.7
Q ss_pred ChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCcc
Q 017726 20 IPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQF 95 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~~ 95 (367)
.++++.+++.+.... +.++ ......++.++++++++ . .+.+++++||++|+..++... ...+++|++..+.|+
T Consensus 69 ~~p~v~~a~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~-~-~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yh 145 (427)
T 3fq8_A 69 AHPEVIEALKVAMEKGTSFGA-PCALENVLAEMVNDAVP-S-IEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYH 145 (427)
T ss_dssp TCHHHHHHHHHHHTTCSCCSS-CCHHHHHHHHHHHHHST-T-CSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCC
T ss_pred CCHHHHHHHHHHHHhCCCcCC-CCHHHHHHHHHHHHhCC-C-CCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcC
Confidence 367788877765432 2222 34677899999999987 3 346999999999999988432 234578999888887
Q ss_pred hHHHHH------HHHHhC------------CceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc--
Q 017726 96 SLLWID------QQQRLN------------FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN-- 155 (367)
Q Consensus 96 ~~~~~~------~~~~~g------------~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~-- 155 (367)
+..... .....+ ..+..++.+ |++++++++++++ +++++|++++++|++|.+.+
T Consensus 146 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~-~~~~~vi~~p~~~~~G~~~~~~ 219 (427)
T 3fq8_A 146 GHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN-----DLEAVKALFAENP-GEIAGVILEPIVGNSGFIVPDA 219 (427)
T ss_dssp CSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-----CHHHHHHHHHHST-TTEEEEEECSSBCTTSCBCCCT
T ss_pred CCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-----CHHHHHHHHHhCC-CCEEEEEEcCCcCCCCCcCCCH
Confidence 632100 000000 123344432 8999999998754 46789999988899999998
Q ss_pred --HHHHHHHHHhcCCCcEEEEeeeeccC---c-eeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCc
Q 017726 156 --LSKVRKLLDEYRHPALFLVDGVSSIC---A-IDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR 229 (367)
Q Consensus 156 --~~~i~~~~~~~~~~~~vi~D~~~~~~---~-~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~ 229 (367)
+++|.++|++ +|+++|+|++|+.. . ...+......|++++ +|+++++.++|++++++++++.+.....
T Consensus 220 ~~l~~l~~l~~~--~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~t~--sK~~~~G~~~G~~~~~~~~~~~~~~~~~-- 293 (427)
T 3fq8_A 220 GFLEGLREITLE--HDALLVFDEVITGFRIAYGGVQEKFGVTPDLTTL--GKIIGGGLPVGAYGGKREIMQLVAPAGP-- 293 (427)
T ss_dssp THHHHHHHHHHH--TTCEEEEECTTTBTTTBTTHHHHHTTCCCSEEEE--CGGGGTTSSCEEEEECHHHHTTBTTTSS--
T ss_pred HHHHHHHHHHHH--cCCEEEEeccccccccCcchhhHhcCCCCChhhh--hhhhhCCcceEEEEEcHHHHHhhccCCC--
Confidence 9999999999 99999999999832 1 111222234566544 5999754458999999999887764210
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCC
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFS 305 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~ 305 (367)
.. .+. .++.+...+++..++++.+.++ +..++.+++.+++++.|+++ ++....+ ..
T Consensus 294 ~~-----------~~~--t~~~~~~~~aa~~aal~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~ 353 (427)
T 3fq8_A 294 MY-----------QAG--TLSGNPLAMTAGIKTLELLRQP---GTYEYLDQITKRLSDGLLAIAQETGHAACGG----QV 353 (427)
T ss_dssp BC-----------CCC--TTTTCHHHHHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHHHTTCCCEEE----EE
T ss_pred cc-----------ccC--CCCcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE----Ee
Confidence 00 111 3456776667777777766554 34556677777777777664 2222111 23
Q ss_pred CceEEEEcCCC-CC------------HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 306 DTVTAVIVPSH-IN------------SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 306 ~~~~~~~~~~~-~~------------~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
+.++++.+++. .. ..++.+.|.++ ||.+.++.. ..+|++.....++.+...+.|+
T Consensus 354 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gi~v~~~~~----~r~~~~~~~t~e~i~~~l~~l~ 421 (427)
T 3fq8_A 354 SGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQ-GIYLAPSQF----EAGFTSLAHTEEDIDATLAAAR 421 (427)
T ss_dssp TTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSSTT----SCEECCTTCCHHHHHHHHHHHH
T ss_pred eeEEEEEEecCccccccccccccHHHHHHHHHHHHHC-CcEEecCCC----CCEEeeCcCCHHHHHHHHHHHH
Confidence 44677776432 11 35788888755 999987542 2466654444444444444443
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-22 Score=185.41 Aligned_cols=306 Identities=11% Similarity=0.011 Sum_probs=191.0
Q ss_pred ChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC--CCCCeEEEEeCCcc
Q 017726 20 IPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--SPGDRIISFLIGQF 95 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~--~~gd~vl~~~~~~~ 95 (367)
.++++.+++.+.... +.++ ..+...+++++++++++ . .+.+++++||++|+..++.... .+++.|++..+.|+
T Consensus 70 ~~p~v~~A~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~-~-~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yh 146 (429)
T 4e77_A 70 NHPAIRQAVIEAVERGLSFGA-PTEMEVKMAQLVTDLVP-T-MDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYH 146 (429)
T ss_dssp TCHHHHHHHHHHHTTCSCCSS-CCHHHHHHHHHHHHHST-T-CSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCC
T ss_pred CCHHHHHHHHHHHHhCcccCC-CCHHHHHHHHHHHhhCC-C-CCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccC
Confidence 367788888775433 1112 23667789999999987 3 3469999999999999887432 35678998888888
Q ss_pred hHHHHHH-HHHhCC-----------------ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc--
Q 017726 96 SLLWIDQ-QQRLNF-----------------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN-- 155 (367)
Q Consensus 96 ~~~~~~~-~~~~g~-----------------~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~-- 155 (367)
+...... ....+. .+..++. .|++++++++++.. +++++|++...++.+|.+.+
T Consensus 147 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~-~~~~~vi~ep~~~~~g~~~~~~ 220 (429)
T 4e77_A 147 GHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTY-----NDLASVRQAFEQYP-QEVACIIVEPVAGNMNCIPPLP 220 (429)
T ss_dssp C------------------CCCTTSCGGGGTTEEEECT-----TCHHHHHHHHHHST-TTEEEEEECSSBCTTSCBCCCT
T ss_pred CCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCC-----CCHHHHHHHHHhcC-CCEEEEEECCccCCCCCcCCCH
Confidence 7542111 000111 1222222 17999999998643 35666666655566677777
Q ss_pred --HHHHHHHHHhcCCCcEEEEeeeeccC---ce-eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCc
Q 017726 156 --LSKVRKLLDEYRHPALFLVDGVSSIC---AI-DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR 229 (367)
Q Consensus 156 --~~~i~~~~~~~~~~~~vi~D~~~~~~---~~-~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~ 229 (367)
+++|.++|++ +|+++|+|++|+.. .. ..+......|++ |++|.++++.++|++++++++++.+.....
T Consensus 221 ~~l~~l~~l~~~--~~~lli~DEv~~g~r~g~~~~~~~~~~~pdi~--t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~-- 294 (429)
T 4e77_A 221 EFLPGLRALCDE--FGALLIIDEVMTGFRVALAGAQDYYHVIPDLT--CLGKIIGGGMPVGAFGGRREVMNALAPTGP-- 294 (429)
T ss_dssp THHHHHHHHHHH--HTCEEEEEETTTBTTTBTTCHHHHTTCCCSEE--EEEGGGGTTSCCEEEEECHHHHTTBTTTSS--
T ss_pred HHHHHHHHHHHH--cCCEEEEeccccCcccCcchHHHhcCCCCCee--eecccccCCCCeEEEEECHHHHHHhccCCC--
Confidence 8999999999 99999999999832 11 112222235765 556999765567999999999877754210
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCC
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFS 305 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~ 305 (367)
.. .+. .++.+...+++..++++.+.++ +..++..++.+++++.|++. ++....+ ..
T Consensus 295 ~~-----------~~~--t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~ 354 (429)
T 4e77_A 295 VY-----------QAG--TLSGNPIAMAAGFACLTEISQV---GVYETLTELTDSLATGLRHAAKEENIPLVVN----HV 354 (429)
T ss_dssp BC-----------C----CCCCCHHHHHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHHHTTCCCEEE----EE
T ss_pred cc-----------ccC--CCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCceEEE----Ee
Confidence 00 011 4457777777777788876543 34556666777777777653 3322221 23
Q ss_pred CceEEEEcCCCC--------------CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 306 DTVTAVIVPSHI--------------NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 306 ~~~~~~~~~~~~--------------~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
+.++++.+++.. ...++++.|.++ ||.+.++.. ..+|++.....++.+...++|+
T Consensus 355 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~----~~~~~~~~~t~e~i~~~l~~l~ 423 (429)
T 4e77_A 355 GGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEE-GVYLAPSAF----EAGFMSLAHSNEDIQKTVNAAR 423 (429)
T ss_dssp TTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHT-TEECCSSTT----SCEECCTTCCHHHHHHHHHHHH
T ss_pred eeEEEEEEccCcccccccccccccHHHHHHHHHHHHHC-CeEEeecCC----CCEEEeccCCHHHHHHHHHHHH
Confidence 456777775321 126788888765 999987642 3467764444444454444443
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.1e-23 Score=190.96 Aligned_cols=307 Identities=15% Similarity=0.170 Sum_probs=196.6
Q ss_pred hHHHH-H-HHcc---CCCC--CCC-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC---C-------
Q 017726 21 PDQVI-R-AMNR---NNED--YRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL---S------- 82 (367)
Q Consensus 21 ~~~v~-~-a~~~---~~~~--~~~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~---~------- 82 (367)
++.+. + ++.+ .... +.+ ........++++.++++++....+++++++||++|+..++.... .
T Consensus 72 ~p~v~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~ 151 (449)
T 2cjg_A 72 PPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHG 151 (449)
T ss_dssp CHHHHTCHHHHHHHHHHHTCCCCTTTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccc
Confidence 66677 6 6665 3211 211 11235567899999999973333469999999999999886432 2
Q ss_pred ---C-CCeEEEEeCCcchHHHH--HH-----HHHhCC-----ceEEEeCCC--CC--------CCCHHHHHHHHhccCCC
Q 017726 83 ---P-GDRIISFLIGQFSLLWI--DQ-----QQRLNF-----NVDVVESDW--GE--------GAKLDVLASKLAADTAH 136 (367)
Q Consensus 83 ---~-gd~vl~~~~~~~~~~~~--~~-----~~~~g~-----~~~~v~~~~--~~--------~~d~e~l~~~i~~~~~~ 136 (367)
+ |++|++.++.|++.... .. ....+. ++..++.+. .. ..+++++++++++++ +
T Consensus 152 ~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~-~ 230 (449)
T 2cjg_A 152 IDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRP-H 230 (449)
T ss_dssp SCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHST-T
T ss_pred cccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcC-C
Confidence 2 88999999988875311 10 111222 455666543 11 245667999887533 4
Q ss_pred CccEEEEEecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCC
Q 017726 137 TIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPT 207 (367)
Q Consensus 137 ~~~lv~~~~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~ 207 (367)
++++|++++++|++|.+.+ +++|.++|++ +|+++|+|++|+.... .++......|+++ ++|++
T Consensus 231 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~--~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t--~sK~l---- 302 (449)
T 2cjg_A 231 DIACFVAEPIQGEGGDRHFRPEFFAAMRELCDE--FDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVA--FGKKT---- 302 (449)
T ss_dssp TEEEEEECSEETTTTCEECCHHHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEE--ECGGG----
T ss_pred ceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHH--CCcEEEEeccccCCCccCcceeecccCCCceEEE--ecCcc----
Confidence 7788888877899997766 9999999999 9999999999983211 1122223467765 46988
Q ss_pred cceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Q 017726 208 GMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRL 287 (367)
Q Consensus 208 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~ 287 (367)
.+|++++++++++.+.+..... ...+. .++.+...+++..++++.+.++ ++.++..++++++++
T Consensus 303 ~iG~~~~~~~~~~~l~~~~~~~-----------~~~~~--t~~~n~~~~~aa~aal~~~~~~---~~~~~~~~~~~~l~~ 366 (449)
T 2cjg_A 303 QVCGVMAGRRVDEVADNVFAVP-----------SRLNS--TWGGNLTDMVRARRILEVIEAE---GLFERAVQHGKYLRA 366 (449)
T ss_dssp SSEEEEECGGGGGSTTCTTTST-----------TSSCC--SSSSCHHHHHHHHHHHHHHHHH---THHHHHHHHHHHHHH
T ss_pred cEEEEEECHHHhhhhhhcccCC-----------ccccc--CCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHH
Confidence 3799999998876543211000 00111 3456677777777888877664 355678888999999
Q ss_pred HHHHc--CCcc-ccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 288 AVEAW--GLKN-CTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 288 ~L~~~--g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
.|+++ +++. +.... ..+.++.+.+++..+..++++.|.+ +||.+.++- .+++|+++....+++++
T Consensus 367 ~L~~l~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~g----~~~iRi~~~~~~t~e~i 434 (449)
T 2cjg_A 367 RLDELAADFPAVVLDPR--GRGLMCAFSLPTTADRDELIRQLWQ-RAVIVLPAG----ADTVRFRPPLTVSTAEI 434 (449)
T ss_dssp HHHHHHHHSTTTSEEEE--EETTEEEEECSSHHHHHHHHHHHHH-TTEECEEET----TTEEEECCCTTCCHHHH
T ss_pred HHHHHHhhCCCceeeEe--eccEEEEEEECChHHHHHHHHHHHH-CCeEEecCC----CCEEEEECCCCCCHHHH
Confidence 99875 2332 21101 1234666777432245689999975 599998752 47899986555555443
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-21 Score=174.77 Aligned_cols=312 Identities=13% Similarity=0.078 Sum_probs=210.7
Q ss_pred CcccccCCCCCChHHHHHHHccCCCC--------CCCC---cHH-HHHHHHHHHHHHHhcCCCCceE--EecCChhHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNED--------YRSP---AVP-ALTKTLLEDIKKIFKTTSGTPF--LIPTTGTGAWE 74 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~--------~~~~---~~~-~~~~~~~~~la~~~~~~~~~~v--~~~~ggt~al~ 74 (367)
+.+.++|.---+++.|++++-....+ .++| .+. .+..-++++..++||++.+++- +=.-||+.|+.
T Consensus 55 ~~ieLIASEN~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~ 134 (490)
T 3ou5_A 55 RGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANL 134 (490)
T ss_dssp HSEECCTTCCCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHH
T ss_pred cCceEecCCCcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHH
Confidence 35667888888999999998875432 1222 233 3344467788999999876421 44568999999
Q ss_pred HHHHccCCCCCeEEEEeCCcchHHHHH------HHHHhCCceEEE--eCC-CCCCCCHHHHHHHHhccCCCCccEEEEEe
Q 017726 75 SALTNTLSPGDRIISFLIGQFSLLWID------QQQRLNFNVDVV--ESD-WGEGAKLDVLASKLAADTAHTIKAICIVH 145 (367)
Q Consensus 75 ~~~~~~~~~gd~vl~~~~~~~~~~~~~------~~~~~g~~~~~v--~~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~ 145 (367)
.++.++++|||+|+..+..+.++.... -....|.-+..+ +++ +++.+|.|++++...+ .|||+|++-.
T Consensus 135 avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~---~kPklIi~G~ 211 (490)
T 3ou5_A 135 AVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARL---FRPRLIIAGT 211 (490)
T ss_dssp HHHHHHCC-CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHH---HCCSEEEECC
T ss_pred HHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhh---cCCCeEEECC
Confidence 999999999999999888666553211 111123222333 333 3567999999999887 5789998865
Q ss_pred cCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccC-----ceeeccccccceEEEecCCCcccCCCcceeeeeCHH---
Q 017726 146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSIC-----AIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPK--- 217 (367)
Q Consensus 146 ~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~-----~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~--- 217 (367)
-. .-...|.++++++|++ .|+++++|.+|-.| ..+.++. .+|++++|+||+|.||+| |++.++++
T Consensus 212 Sa--Y~r~id~~~~reIAd~--vGA~Lm~DmAHiaGLVA~g~~psP~~--~ADvVTtTTHKTLrGPrG-G~Il~~~~~~~ 284 (490)
T 3ou5_A 212 SA--YARLIDYARMREVCDE--VKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGARS-GLIFYRKGVKA 284 (490)
T ss_dssp SS--CCSCCCHHHHHHHHHH--HTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSSTTCSCSC-EEEEEECSEEE
T ss_pred cc--CccccCHHHHHHHHhh--cccEEEechhhhhhhhcccccCCccc--cceEEeccccccccCCCc-eEEEecccccc
Confidence 43 3346799999999999 99999999999654 3344544 489999999999999997 88887763
Q ss_pred ------------HHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Q 017726 218 ------------ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKAT 285 (367)
Q Consensus 218 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l 285 (367)
+.+++.....+ |. .+.|....+++...++........++-.++..+|++.|
T Consensus 285 ~~~k~~~~~~~~~~kkin~aVFP---------------g~--qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaL 347 (490)
T 3ou5_A 285 VDPKTGREIPYTFEDRINFAVFP---------------SL--QGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAM 347 (490)
T ss_dssp ECC--CCEEECCCHHHHHHHHTT---------------TT--CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHhhcCc---------------cc--cccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 22233221111 11 22377777788888888766655788889999999999
Q ss_pred HHHHHHcCCccccCCCccCCCceEEEEc-CCCCCHHHHHHHHHhhCCeEEc----cCC-CCCCCcEEEEeec
Q 017726 286 RLAVEAWGLKNCTQKEEWFSDTVTAVIV-PSHINSSEIVRRAWQRYNLSLG----LGL-NKVAGKVFRIGHL 351 (367)
Q Consensus 286 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~~gv~v~----~g~-~~~~~~~iRi~~~ 351 (367)
.+.|.+.|+.+++.. ..++++.+++ +.+++..+..+.| ++.||.+- |+. .+..++.||||..
T Consensus 348 A~~L~~~G~~vvsGg---TdnHlvLvDl~~~g~tG~~ae~~L-e~agItvNkN~iP~D~sp~~~SGiRiGTp 415 (490)
T 3ou5_A 348 ADALLERGYSLVSGG---TDNHLVLVDLRPKGLDGARAERVL-ELVSITANKNTCPGDRSAITPGGLRLGAP 415 (490)
T ss_dssp HHHHHHTTCEEGGGS---CSSSEEEEECGGGTCCHHHHHHHH-HHTTEECEEECCTTCCCSSSCSEEEEESH
T ss_pred HHHHHhCCCeeecCC---CCceEEEEeccccCCCHHHHHHHH-HHcCcEECCCCCCCCCCCCCCCeeEECCH
Confidence 999999999998743 3455677776 3467777777777 56799885 332 1233467999974
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.9e-24 Score=195.82 Aligned_cols=304 Identities=11% Similarity=0.043 Sum_probs=193.1
Q ss_pred ChHHHHHHHccCCCC---CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC--CCCeEEEEeCCc
Q 017726 20 IPDQVIRAMNRNNED---YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS--PGDRIISFLIGQ 94 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~--~gd~vl~~~~~~ 94 (367)
.++++.+++.+.... ...+ .....+++++++++++ . .+.+++++||++|+..++..... ++++|++.++.|
T Consensus 70 ~~p~v~~A~~~~~~~~~~~~~~--~~~~~~l~~~la~~~~-~-~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~y 145 (429)
T 3k28_A 70 ANDRVVEALKAVAERGTSFGAP--TEIENKLAKLVIERVP-S-IEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCY 145 (429)
T ss_dssp SCHHHHHHHHHHHHHCSCCSSC--CHHHHHHHHHHHHHST-T-CSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCC
T ss_pred CCHHHHHHHHHHHhhCcCcCCC--CHHHHHHHHHHHHhCC-C-CCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCc
Confidence 467777777764322 2222 3567789999999986 2 34699999999999998876543 667899988887
Q ss_pred chHHHHHHHHHhCC-------------------ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc
Q 017726 95 FSLLWIDQQQRLNF-------------------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN 155 (367)
Q Consensus 95 ~~~~~~~~~~~~g~-------------------~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~ 155 (367)
++... ......|. ++..++.+ |++++++++++.+ +++++|++..+++++|.+.+
T Consensus 146 hg~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~-~~~~~vi~ep~~~~~G~~~~ 218 (429)
T 3k28_A 146 HGHGD-SLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYN-----DLESVKYAFEQFG-DDIACVIVEPVAGNMGVVPP 218 (429)
T ss_dssp CCSCG-GGCSSCCTTC-----CCCTTCCHHHHTTEEEEETT-----CHHHHHHHHHHHG-GGEEEEEECSSBCTTSCBCC
T ss_pred CCCcH-HHHHhcCCcccccCCCCcCCCCCcccCceeecCCC-----CHHHHHHHHHhCC-CCEEEEEEcCCCCCCCcccC
Confidence 76431 11111121 22333322 7999999998543 35677888877788888888
Q ss_pred ----HHHHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCC
Q 017726 156 ----LSKVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAK 226 (367)
Q Consensus 156 ----~~~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~ 226 (367)
+++|.++|++ +|+++|+|++|... .. .+......|+++ ++|.++++.++|++++++++++.+....
T Consensus 219 ~~~~l~~l~~l~~~--~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t--~sK~~~~G~~iG~~~~~~~~~~~~~~~~ 293 (429)
T 3k28_A 219 QPGFLEGLREVTEQ--NGALLIFDEVMTGF-RVAYNCGQGYYGVTPDLTC--LGKVIGGGLPVGAYGGKAEIMRQVAPSG 293 (429)
T ss_dssp CTTHHHHHHHHHHH--HTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEE--ECGGGGTTSCCEEEEECHHHHTTBTTTS
T ss_pred CHHHHHHHHHHHHH--cCCEEEEecccccc-ccCcchHHHHhCCCCceeh--hhhhhcCCCCeEEEEEcHHHHhhhccCC
Confidence 9999999999 99999999999732 11 111122356665 5699976566899999999887765321
Q ss_pred CCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccC
Q 017726 227 SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWF 304 (367)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~ 304 (367)
. .. .+. .++.+...+++..++++... ++..++.+++++++++.|+++ .+.....-. .
T Consensus 294 ~--~~-----------~~~--t~~~~~~a~aaa~aal~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--~ 352 (429)
T 3k28_A 294 P--IY-----------QAG--TLSGNPLAMAAGYETLVQLT----PESYVEFERKAEMLEAGLRKAAEKHGIPHHIN--R 352 (429)
T ss_dssp S--BC-----------CCC--TTTTCHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEE--E
T ss_pred C--cc-----------ccC--CCCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEE--e
Confidence 0 00 111 34566655555555555432 567778888888888888775 122211100 1
Q ss_pred CCceEEEEcCCCC-------------CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 305 SDTVTAVIVPSHI-------------NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 305 ~~~~~~~~~~~~~-------------~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
.+.++.+.+.+.. ...++++.|.++ ||.+.++. ...+|+++....++.+...++|+
T Consensus 353 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~r~~~~~t~e~i~~~l~~l~ 421 (429)
T 3k28_A 353 AGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQ-GVFLPPSQ----FEGLFLSTVHSDADIEATIAAAE 421 (429)
T ss_dssp ETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSST----TSCBCCCTTCCHHHHHHHHHHHH
T ss_pred eccEEEEEEecCCcccccccccccHHHHHHHHHHHHHC-CeEEecCC----CCCEEEECCCCHHHHHHHHHHHH
Confidence 2345566652211 136788888755 99998752 24588875445445555555444
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-22 Score=188.87 Aligned_cols=306 Identities=13% Similarity=0.097 Sum_probs=191.6
Q ss_pred hHHHHHHHccCCC----CCC-CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC--------CCCeE
Q 017726 21 PDQVIRAMNRNNE----DYR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS--------PGDRI 87 (367)
Q Consensus 21 ~~~v~~a~~~~~~----~~~-~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~--------~gd~v 87 (367)
++++.+++.+... .+. .....+...+++++++++++.+.+ .+++++||++|+..++..+.. +++.|
T Consensus 68 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~-~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~v 146 (459)
T 4a6r_A 68 RKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGFD-RVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTL 146 (459)
T ss_dssp CHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTTCC-EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEE
T ss_pred CHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCCC-EEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 4556666655321 111 112336678899999999876554 599999999999999987654 57899
Q ss_pred EEEeCCcchHHHHHHHHHhC------------CceEEEeCCC-----CCCCC--------HHHHHHHHhccCCCCccEEE
Q 017726 88 ISFLIGQFSLLWIDQQQRLN------------FNVDVVESDW-----GEGAK--------LDVLASKLAADTAHTIKAIC 142 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~-----~~~~d--------~e~l~~~i~~~~~~~~~lv~ 142 (367)
++..+.|++...... ...+ ..+..++.+. +. .| ++++++++++...+++++|+
T Consensus 147 i~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~~~~~~vi 224 (459)
T 4a6r_A 147 IGRWNGYHGSTIGGA-SLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGADKVAAFV 224 (459)
T ss_dssp EEETTCCCCSSHHHH-HHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEE
T ss_pred EEECCCcCCccHHHH-hhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 999998887643211 1111 1334454332 11 34 78899988753213457777
Q ss_pred EEecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCC-Ccceee
Q 017726 143 IVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLP-TGMGIV 212 (367)
Q Consensus 143 ~~~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~ 212 (367)
+..+++++|.+.+ +++|.++|++ +|+++|+|++|..... ..+......|++++ +|.++++ .++|++
T Consensus 225 ~ep~~~~~G~~~~~~~~l~~l~~l~~~--~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t~--sK~l~gg~~~lg~v 300 (459)
T 4a6r_A 225 GEPIQGAGGVIVPPATYWPEIERICRK--YDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTA--AKGLSSGYLPIGAV 300 (459)
T ss_dssp ECSSBTTTTCBCCCTTHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEE--CGGGGTTSSCCEEE
T ss_pred ECCccCCCCcccCCHHHHHHHHHHHHH--cCCEEEEeccccCCCcccccchHhhcCCCCCeeeh--hhhhcCCCCCccce
Confidence 7777777888776 9999999999 9999999999873211 11222234677765 5888765 468999
Q ss_pred eeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHH-H
Q 017726 213 CASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHR-RLGKATRLAV-E 290 (367)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~-~~~~~l~~~L-~ 290 (367)
++++++++.+..... +..+. .++.+...+++..++++.+.+++ ..++.+ ++.+++++.| +
T Consensus 301 ~~~~~i~~~~~~~~~-------------~~~~~--t~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~~~~~~l~~ 362 (459)
T 4a6r_A 301 FVGKRVAEGLIAGGD-------------FNHGF--TYSGHPVCAAVAHANVAALRDEG---IVQRVKDDIGPYMQKRWRE 362 (459)
T ss_dssp EECHHHHHHHHHHCT-------------THHHH--HHCSCHHHHHHHHHHHHHHHHTC---HHHHHHHTHHHHHHHHHHH
T ss_pred eeCHHHHHHhhcCCC-------------cccCC--CCCCCHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHH
Confidence 999999887762100 00011 23456666667777787776654 344555 5666666666 4
Q ss_pred Hc-CCccccCCCccCCCceEEEEcCCCCC-----------HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHH
Q 017726 291 AW-GLKNCTQKEEWFSDTVTAVIVPSHIN-----------SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 291 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~ 358 (367)
.+ .+..+..-. ..+.++.+.+.+... ..++++.|.++ ||.++++ ++++||++....+.++
T Consensus 363 ~l~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~-----g~~iRi~~~~~~t~e~ 434 (459)
T 4a6r_A 363 TFSRFEHVDDVR--GVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRN-NLIMRAC-----GDHIVSAPPLVMTRAE 434 (459)
T ss_dssp HHTTCTTEEEEE--EETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHT-TEECEEE-----TTEEEECCCTTCCHHH
T ss_pred HHhcCCCeEEEE--EEEEEEEEEEecCccccccccchHHHHHHHHHHHHHC-CeEEecC-----CCEEEEECCCCCCHHH
Confidence 44 332222111 123355566533211 56788888765 9999875 2789999655555443
Q ss_pred H
Q 017726 359 F 359 (367)
Q Consensus 359 ~ 359 (367)
+
T Consensus 435 i 435 (459)
T 4a6r_A 435 V 435 (459)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-22 Score=186.68 Aligned_cols=308 Identities=12% Similarity=0.075 Sum_probs=188.1
Q ss_pred hHHHHHHHccCCCC--CCC--CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC--CCCeEEEEeCCc
Q 017726 21 PDQVIRAMNRNNED--YRS--PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS--PGDRIISFLIGQ 94 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~--~gd~vl~~~~~~ 94 (367)
++++.+++.+.... +.. ....+...++.++++++++....+.+++++||++|+..++..... .+++|++..+.|
T Consensus 79 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~y 158 (451)
T 3oks_A 79 APKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAY 158 (451)
T ss_dssp CHHHHHHHHHHHTTCSCCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCC
T ss_pred CHHHHHHHHHHHHhcccccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCc
Confidence 56677776664322 211 123466778999999998765445799999999999999876442 457899999988
Q ss_pred chHHHHHHHHHhC-------------CceEEEeCCCCC-----CC--------CHHHHHHHHhcc-CCCCccEEEEEecC
Q 017726 95 FSLLWIDQQQRLN-------------FNVDVVESDWGE-----GA--------KLDVLASKLAAD-TAHTIKAICIVHNE 147 (367)
Q Consensus 95 ~~~~~~~~~~~~g-------------~~~~~v~~~~~~-----~~--------d~e~l~~~i~~~-~~~~~~lv~~~~~~ 147 (367)
++....... ..+ ..+..++.+... .. +++.+++.+++. ..+++++|++...+
T Consensus 159 hG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~ 237 (451)
T 3oks_A 159 HGRTNLTMA-LTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQ 237 (451)
T ss_dssp CCSSHHHHH-HCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSB
T ss_pred CCccHHHHH-hcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCc
Confidence 876422111 111 145666654211 01 244455555431 10244566665555
Q ss_pred CCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCCcceeeeeCHHH
Q 017726 148 TATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKA 218 (367)
Q Consensus 148 n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~ 218 (367)
+..|.+.+ +++|+++|++ ||+++|+|++|..... ..+......|++ +++|.++++.++|++++++++
T Consensus 238 ~~gG~~~~~~~~l~~l~~l~~~--~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~iG~v~~~~~~ 313 (451)
T 3oks_A 238 GEGGFIVPADGFLPTLLDWCRK--NDVVFIADEVQTGFARTGAMFACEHEGIDPDLI--VTAKGIAGGLPLSAVTGRAEI 313 (451)
T ss_dssp TTTTCBCCCTTHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCEEEEEEHHH
T ss_pred CCCCccCCCHHHHHHHHHHHHH--cCCEEEEEecccCCCccccchhhhhcCCCCCee--eehhhhhCCcceEEEEECHHH
Confidence 56666665 8999999999 9999999999873221 122222346776 456999765567999999998
Q ss_pred HHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCcc
Q 017726 219 LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKN 296 (367)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~ 296 (367)
++.+..... +. .++.+...+++..++++.+.+++ ..++.+++.+++++.|+++ .+..
T Consensus 314 ~~~~~~~~~----------------~~--t~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~L~~~~~~~~~ 372 (451)
T 3oks_A 314 MDSPHVSGL----------------GG--TYGGNPIACAAALATIETIESEG---LVARAQQIEKIMKDRLGRLQAEDDR 372 (451)
T ss_dssp HTCSCTTSB----------------CC--SSSSCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HhhhcCCCc----------------CC--CCCCCHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 877653211 11 34566666677777787766653 4445566666666666653 2222
Q ss_pred ccCCCccCCCceEEEEcCC-------CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 297 CTQKEEWFSDTVTAVIVPS-------HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
...-. ..+.++++.+.+ .....++.+.|.++ ||.+.++-. .+..+|+++....+++++
T Consensus 373 ~~~~~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--~~~~iRi~~~~~~t~e~i 437 (451)
T 3oks_A 373 IGDVR--GRGAMIAMELVKAGTTEPDADLTKALCAGAHAA-GVIVLSCGT--YGNVVRFLPPLSIGDDLL 437 (451)
T ss_dssp EEEEE--EETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHT-TEECEEECT--TSCEEEECCCTTCCHHHH
T ss_pred eEEEE--EeeEEEEEEEecCccCCCCHHHHHHHHHHHHhC-CcEEecCCC--CCCEEEEECCCCCCHHHH
Confidence 11100 123456666521 12355788888755 999987532 246899986666555444
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-22 Score=185.41 Aligned_cols=304 Identities=13% Similarity=0.079 Sum_probs=184.1
Q ss_pred hHHHHHHHccCCC--CCC--CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC--CCCCeEEEEeCCc
Q 017726 21 PDQVIRAMNRNNE--DYR--SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--SPGDRIISFLIGQ 94 (367)
Q Consensus 21 ~~~v~~a~~~~~~--~~~--~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~--~~gd~vl~~~~~~ 94 (367)
++++.+++.+... .+. .....+...+++++++++++.+..+.+++++||++|+..++.... ..++.|++..+.|
T Consensus 82 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~y 161 (453)
T 4ffc_A 82 HPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAY 161 (453)
T ss_dssp CHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCC
T ss_pred CHHHHHHHHHHHHhccccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCcc
Confidence 5666666665421 111 122346677999999999986544579999999999999986543 2457899999988
Q ss_pred chHHHHHHHHHhC-------------CceEEEeCCCC----CCCC--------HHHHHHHHhccCCCCccEEEEEecCCC
Q 017726 95 FSLLWIDQQQRLN-------------FNVDVVESDWG----EGAK--------LDVLASKLAADTAHTIKAICIVHNETA 149 (367)
Q Consensus 95 ~~~~~~~~~~~~g-------------~~~~~v~~~~~----~~~d--------~e~l~~~i~~~~~~~~~lv~~~~~~n~ 149 (367)
++...... ...+ ..+..++.+.. ...+ ++.+++.+.. +...++++.|.|+
T Consensus 162 hg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~----~~~aavi~ep~~~ 236 (453)
T 4ffc_A 162 HGRTNLTM-ALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGA----QSLAAIIIEPIQG 236 (453)
T ss_dssp CCSSHHHH-HHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCG----GGEEEEEECSSBT
T ss_pred CCcchHHH-hhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCC----CCEEEEEEcCCCC
Confidence 87642211 1111 14556665421 1222 2445554432 2344444555555
Q ss_pred c-ccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCCcceeeeeCHHHH
Q 017726 150 T-GVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKAL 219 (367)
Q Consensus 150 t-G~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~ 219 (367)
+ |.+.+ +++|.++|++ ||+++|+|++|..... ..+......|++++ +|.++++.++|+++++++++
T Consensus 237 ~gG~~~~~~~~l~~l~~l~~~--~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~--sK~~~~G~~~G~~~~~~~i~ 312 (453)
T 4ffc_A 237 EGGFIVPAPGFLATLTAWASE--NGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTM--AKGIAGGMPLSAVTGRAELM 312 (453)
T ss_dssp TTTSBCCCTTHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEE--CGGGGTTSSCEEEEEEHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHH--cCCEEEEecCccCCCcccccchhhhcCCCcchHhh--hhhhcCCcCeEEEEECHHHH
Confidence 5 56655 8999999999 9999999999873211 11222224566654 69987655689999999988
Q ss_pred HHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccc
Q 017726 220 EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNC 297 (367)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~ 297 (367)
+.+..... +. .++.+...+++..++++.+.+++ ..++.+++.+++++.|+++ .+...
T Consensus 313 ~~~~~~~~----------------~~--t~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~ 371 (453)
T 4ffc_A 313 DAVYAGGL----------------GG--TYGGNPVTCAAAVAALGVMRELD---LPARARAIEASVTSRLSALAEEVDII 371 (453)
T ss_dssp TTSCTTSS----------------CC--SSSSCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCSSE
T ss_pred hhhcccCc----------------CC--CCCcCHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 77654311 11 34566666677777777766554 3445555666666666553 22221
Q ss_pred cCCCccCCCceEEEEcCC-------CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 298 TQKEEWFSDTVTAVIVPS-------HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
..-. ..+.++++.+.+ .....++.+.|.++ ||.+.++-. .+..+|+++....+++++
T Consensus 372 ~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--~~~~iRi~~~~~~t~e~i 435 (453)
T 4ffc_A 372 GEVR--GRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQ-GVLILTCGT--FGNVIRLLPPLVIGDDLL 435 (453)
T ss_dssp EEEE--EETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHT-TEECCEECT--TSCEEEECCCTTCCHHHH
T ss_pred EEEE--eeceEEEEEEecCcccCCCHHHHHHHHHHHHhC-CCEEecCCC--CCCEEEEECCCCCCHHHH
Confidence 1100 123456666522 11245788888755 999987532 246899986655555444
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-22 Score=186.91 Aligned_cols=306 Identities=15% Similarity=0.073 Sum_probs=197.9
Q ss_pred ChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHc--cCCCCCeEEEEeCCcc
Q 017726 20 IPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQF 95 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~--~~~~gd~vl~~~~~~~ 95 (367)
.++.+.+++.+.... +.++ ..+...++++.++++++ . .+.+++++||++|+..++.. .+.++++|++.++.|+
T Consensus 73 ~~~~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~-~-~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yh 149 (434)
T 2epj_A 73 KHPRVLEAVEEALARGWLYGA-PGEAEVLLAEKILGYVK-R-GGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYH 149 (434)
T ss_dssp TCHHHHHHHHHHHHTCSCCSS-CCHHHHHHHHHHHHHHC-T-TCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCC
T ss_pred CCHHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHhCC-C-CCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcC
Confidence 467788887775432 1221 23567789999999985 2 34699999999999998876 1345678888888877
Q ss_pred hHHHHHH--H----------HHhCC------ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc--
Q 017726 96 SLLWIDQ--Q----------QRLNF------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN-- 155 (367)
Q Consensus 96 ~~~~~~~--~----------~~~g~------~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~-- 155 (367)
+...... . ...|+ ++..++. .|++++++++++.. +++++|++++.++++|.+.|
T Consensus 150 g~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~-~~~~~vi~ep~~~~~G~~~~~~ 223 (434)
T 2epj_A 150 GSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-----NDVEALERVFAEYG-DRIAGVIVEPVIANAGVIPPRR 223 (434)
T ss_dssp CSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-----TCHHHHHHHHHHHG-GGEEEEEECSSBCSSSCBCCCH
T ss_pred CCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-----CCHHHHHHHHHhCC-CCEEEEEEeCCcCCCCccCCCH
Confidence 6421000 0 01232 3555554 28999999997532 35677777777788999988
Q ss_pred --HHHHHHHHHhcCCCcEEEEeeeeccCce--e--eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCc
Q 017726 156 --LSKVRKLLDEYRHPALFLVDGVSSICAI--D--FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR 229 (367)
Q Consensus 156 --~~~i~~~~~~~~~~~~vi~D~~~~~~~~--~--~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~ 229 (367)
+++|.++|++ +|+++|+|++|+.... . .+......|++ |++|+++++..+|++++++++++.+.... .
T Consensus 224 ~~l~~l~~l~~~--~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~~~~~~l~~~~--~ 297 (434)
T 2epj_A 224 EFLAALQRLSRE--SGALLILDEVVTGFRLGLEGAQGYFNIEGDII--VLGKIIGGGFPVGAVAGSREVMSLLTPQG--K 297 (434)
T ss_dssp HHHHHHHHHHHH--HTCEEEEEETTTTTTSSTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECHHHHTTBTTTS--S
T ss_pred HHHHHHHHHHHH--cCCEEEEEcchhceeCCcchhhHHhCCCCCee--eecchhcCCcceeeeeecHHHHHhhccCC--C
Confidence 9999999999 9999999999983211 0 11112246775 55799976445799999999877665310 0
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCC
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFS 305 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~ 305 (367)
.. .+. .++.+...+++..++++.+.+. +..++..++++++++.|+++ ++....+ ..
T Consensus 298 ~~-----------~~~--t~~~~~~~~aa~~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~ 357 (434)
T 2epj_A 298 VF-----------NAG--TFNAHPITMAAGLATLKALEEE---PVYSVSREAAKALEEAASEVLDRTGLPYTIN----RV 357 (434)
T ss_dssp BC-----------CCC--TTTTCHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHHHHHHHTCCEEEE----EE
T ss_pred cc-----------cCC--CCCcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHhhCCCcEEEE----Ee
Confidence 00 011 3456676777777888877664 34567777888888888774 5432111 13
Q ss_pred CceEEEEcCCC-------------CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 306 DTVTAVIVPSH-------------INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 306 ~~~~~~~~~~~-------------~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
+.++++.+++. .+..++.+.|.+ +||.+.++.. ..+|+++....++.+...++|+
T Consensus 358 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~----~~~~~~~~~t~e~i~~~l~~l~ 425 (434)
T 2epj_A 358 ESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLR-RGVFIAPSNL----EAVFTGLPHQGEALEIAVEGLR 425 (434)
T ss_dssp TTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTT----SCEECCTTCSHHHHHHHHHHHH
T ss_pred eeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHH-CCeEEeccCC----CcEEEeccCCHHHHHHHHHHHH
Confidence 34677877531 124578888875 4999987642 2477764434444444444443
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-21 Score=181.37 Aligned_cols=310 Identities=15% Similarity=0.123 Sum_probs=198.7
Q ss_pred hHHHHHHHccCCCC--CC-C-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC--------CCCCeEE
Q 017726 21 PDQVIRAMNRNNED--YR-S-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--------SPGDRII 88 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~-~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~--------~~gd~vl 88 (367)
++.+.+++.+.... +. . ....+...++.++++++++...+ .+++++||++|+..++.... ..+++|+
T Consensus 72 ~p~v~~A~~~~l~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~-~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi 150 (476)
T 3i5t_A 72 RREIVDAMAHQAMVLPYASPWYMATSPAARLAEKIATLTPGDLN-RIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRII 150 (476)
T ss_dssp CHHHHHHHHHHHHHCCCCCTTTCBCHHHHHHHHHHHTTSSTTCC-EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred CHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHhcCCCCcC-EEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 56677776664321 11 1 22346677899999998865443 59999999999999998754 3367899
Q ss_pred EEeCCcchHHHHHHHHHhCC------------ceEEEeCCCC--C-CCC--------HHHHHHHHhccCCCCccEEEEEe
Q 017726 89 SFLIGQFSLLWIDQQQRLNF------------NVDVVESDWG--E-GAK--------LDVLASKLAADTAHTIKAICIVH 145 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~--~-~~d--------~e~l~~~i~~~~~~~~~lv~~~~ 145 (367)
+.++.|++..... ....+. .+..++.+.. . ..| +++|++++++...+++++|+++.
T Consensus 151 ~~~~~yHg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep 229 (476)
T 3i5t_A 151 VRYDGYHGSTALT-AACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEP 229 (476)
T ss_dssp EETTCCCCSSHHH-HHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECS
T ss_pred EEcCCcCcCChhh-ccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 9999888764321 111221 2334443221 1 112 78899988753213578889999
Q ss_pred cCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce---e--ec-cccccceEEEecCCCcccCC-Ccceeeee
Q 017726 146 NETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI---D--FR-MDEWGIDVALTGSQKALSLP-TGMGIVCA 214 (367)
Q Consensus 146 ~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~---~--~~-~~~~~~d~~~~s~~K~~~g~-~g~g~~~~ 214 (367)
+++++|.+.+ +++|+++|++ +|+++|+|++|+.... . +. ......|++++ +|.++++ .++|++++
T Consensus 230 ~~~~~G~~~~~~~~L~~l~~lc~~--~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~--sK~l~~G~~plg~v~~ 305 (476)
T 3i5t_A 230 ILASGGVIIPPAGYHARFKAICEK--HDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITF--AKGVTSGYVPLGGLAI 305 (476)
T ss_dssp SBTTTTSBCCCTTHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEE--CGGGGTTSSCCEEEEE
T ss_pred ccCCCCcccCCHHHHHHHHHHHHH--cCCEEEEEecccCCccccCceeeecccCCCcchhhh--hhhhcCCCcCeEEEEE
Confidence 8899997665 8999999999 9999999999873211 1 12 22334677765 5988765 56799999
Q ss_pred CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-C
Q 017726 215 SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-G 293 (367)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g 293 (367)
++++++.+......... +..+. .++.+...+++..++++.+.++ .+.++..++.+++++.|+++ .
T Consensus 306 ~~~i~~~~~~~~~~~~~---------~~~~~--t~~~np~a~aAa~aaL~~~~~~---~~~~~~~~~~~~l~~~L~~l~~ 371 (476)
T 3i5t_A 306 SEAVLARISGENAKGSW---------FTNGY--TYSNQPVACAAALANIELMERE---GIVDQAREMADYFAAALASLRD 371 (476)
T ss_dssp CHHHHHTTSGGGCTTCE---------ECCCC--TTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHTTTT
T ss_pred CHHHHHHHhcCCccccc---------ccccC--CCCcCHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 99998877642100000 01122 3456777777777888877664 35667788888999998875 3
Q ss_pred CccccCCCccCCCceEEEEcCCCC-----------CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHH
Q 017726 294 LKNCTQKEEWFSDTVTAVIVPSHI-----------NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~ 358 (367)
++.+..-. ..+.++.+.+.+.. ...++++.|.++ ||.+++. ++++||++....++++
T Consensus 372 ~~~v~~v~--~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~-----g~~iRi~p~l~~t~e~ 439 (476)
T 3i5t_A 372 LPGVAETR--SVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFEL-GLIVRPL-----GDLCVISPPLIISRAQ 439 (476)
T ss_dssp STTEEEEE--EETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHT-TEECEEE-----TTEEEECCCTTCCHHH
T ss_pred CCCeEEEE--ecCceeEEEEecCccccccccchhHHHHHHHHHHHHC-CCEEEec-----CCEEEEECCCCCCHHH
Confidence 33222111 12335566664321 145688888765 9999872 3789999655555443
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.7e-22 Score=185.64 Aligned_cols=306 Identities=12% Similarity=0.055 Sum_probs=197.3
Q ss_pred hHHHHHHHccCCC----CCC-CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC--------CCCeE
Q 017726 21 PDQVIRAMNRNNE----DYR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS--------PGDRI 87 (367)
Q Consensus 21 ~~~v~~a~~~~~~----~~~-~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~--------~gd~v 87 (367)
++.+.+++.+... .+. .....+...++.++++++++.+. +.+++++||++|+..++..... ++++|
T Consensus 73 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~-~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~i 151 (472)
T 3hmu_A 73 RDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDL-NHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVI 151 (472)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSEECHHHHHHHHHHHHHSCTTE-EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEE
T ss_pred CHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCC-CEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 5666666665422 111 11234567789999999987544 3699999999999999987653 46789
Q ss_pred EEEeCCcchHHHHHHHHHhCC-----------ceEEEeCCCCCC----CC--------HHHHHHHHhccCCCCccEEEEE
Q 017726 88 ISFLIGQFSLLWIDQQQRLNF-----------NVDVVESDWGEG----AK--------LDVLASKLAADTAHTIKAICIV 144 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~-----------~~~~v~~~~~~~----~d--------~e~l~~~i~~~~~~~~~lv~~~ 144 (367)
++.++.|++..... ....+. .+..++.+.... .| ++++++++++...+++++|++.
T Consensus 152 i~~~~~yHg~t~~~-~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~e 230 (472)
T 3hmu_A 152 ISRKNAYHGSTVAS-SALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAE 230 (472)
T ss_dssp EEETTCCCCSSHHH-HHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEEC
T ss_pred EEEcCcCCCccHHh-hhccCChhhccccCCCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEc
Confidence 99999888754221 111121 344555432111 23 7888888874321356788888
Q ss_pred ecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCC-Ccceeeee
Q 017726 145 HNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLP-TGMGIVCA 214 (367)
Q Consensus 145 ~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~ 214 (367)
.+++++|.+.+ +++|+++|++ +|+++|+||+|..... .........|++++ +|.++|+ ..+|++++
T Consensus 231 pv~~~gG~~~~~~~~l~~l~~l~~~--~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~--sK~l~gg~~plG~v~~ 306 (472)
T 3hmu_A 231 PVQGAGGVIVAPDSYWPEIQRICDK--YDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTI--AKGLSSGYAPIGGSIV 306 (472)
T ss_dssp SSBSTTTCBCCCTTHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEE--CGGGTTTSSCCEEEEE
T ss_pred CccCCCCcccCCHHHHHHHHHHHHH--cCCEEEEEccccCCcccCccchhHHhCCCCceeee--chhhhcCCcceEEEEE
Confidence 88888998887 9999999999 9999999999873321 11222234678765 5988765 46799999
Q ss_pred CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHc-
Q 017726 215 SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHR-RLGKATRLAVEAW- 292 (367)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~-~~~~~l~~~L~~~- 292 (367)
++++++.+... . +..+. .++.+...+++..++++.+.+++ ..++.. ++.+++++.|+++
T Consensus 307 ~~~i~~~~~~~---~-----------~~~~~--t~~~np~a~aAa~aaL~~~~~~~---~~~~~~~~~~~~l~~~L~~l~ 367 (472)
T 3hmu_A 307 CDEVAHVIGKD---E-----------FNHGY--TYSGHPVAAAVALENLRILEEEN---ILDHVRNVAAPYLKEKWEALT 367 (472)
T ss_dssp EHHHHHHHTTS---C-----------BCCCC--TTTTCHHHHHHHHHHHHHHHHTT---HHHHHHHTHHHHHHHHHHGGG
T ss_pred CHHHHHhcccC---C-----------ccccC--CCCCCHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHh
Confidence 99998887321 0 01121 34566767777777888776653 455677 7888888888775
Q ss_pred CCccccCCCccCCCceEEEEcCCCCC------------HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 293 GLKNCTQKEEWFSDTVTAVIVPSHIN------------SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 293 g~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
.++.+..-. ..+.++.+.+.+... ..++++.|.++ ||.++++ ++++||++....+++++
T Consensus 368 ~~~~v~~vr--~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~-----g~~iRi~p~~~~t~e~i 438 (472)
T 3hmu_A 368 DHPLVGEAK--IVGMMASIALTPNKASRAKFASEPGTIGYICRERCFAN-NLIMRHV-----GDRMIISPPLVITPAEI 438 (472)
T ss_dssp GSTTEEEEE--EETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHT-TBCCEEE-----TTEEEECCCTTCCHHHH
T ss_pred cCCCeEEEE--ecCceEEEEEecCccccccccchhHHHHHHHHHHHHHC-CcEEEec-----CCEEEEECCCCCCHHHH
Confidence 333222111 123355666632210 45788888765 9998874 27899996555554443
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-21 Score=182.77 Aligned_cols=305 Identities=15% Similarity=0.040 Sum_probs=185.3
Q ss_pred ChHHHHHHHccCCCCCCC-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHc---cCCCCCeEEEEeCCcc
Q 017726 20 IPDQVIRAMNRNNEDYRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN---TLSPGDRIISFLIGQF 95 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~---~~~~gd~vl~~~~~~~ 95 (367)
.++.+.+++.+....... ....+...++.+++++.++ . .+.+++++||++|+..++.. +.. ++.|++.++.|+
T Consensus 74 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~-~~~v~~~~gg~eA~~~al~~ar~~~~-~~~vi~~~~~yh 150 (453)
T 2cy8_A 74 GHPRVNAAIAEALSHGVQYAASHPLEVRWAERIVAAFP-S-IRKLRFTGSGTETTLLALRVARAFTG-RRMILRFEGHYH 150 (453)
T ss_dssp TCHHHHHHHHHHHTTTCSSCSSCHHHHHHHHHHHHHCT-T-CSEEEEESCHHHHHHHHHHHHHHHHC-CCEEEEECC---
T ss_pred CCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhCC-C-CCEEEEeCCHHHHHHHHHHHHHHhhC-CCEEEEEcCCcC
Confidence 567788887775432111 1233566778888887775 3 34699999999999998886 444 468888888777
Q ss_pred hHHHHHH--H-------HHhCC------ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----H
Q 017726 96 SLLWIDQ--Q-------QRLNF------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----L 156 (367)
Q Consensus 96 ~~~~~~~--~-------~~~g~------~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~ 156 (367)
+...... . ...|+ .+..++. .|++++++++++.. +++++|++++.+|++|.+.| +
T Consensus 151 g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~-~~~~~vi~ep~~~~tG~~~~~~~~l 224 (453)
T 2cy8_A 151 GWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-----DDIEGMREVFANHG-SDIAAFIAEPVGSHFGVTPVSDSFL 224 (453)
T ss_dssp -------------------------CGGGEEEECT-----TCHHHHHHHHHHHG-GGEEEEEECSSEHHHHTEECCHHHH
T ss_pred CCchhhHhhcCCccCCCcCCCCCccccCceeecCC-----CCHHHHHHHHHhcC-CCEEEEEECCCCCCCCCcCCCHHHH
Confidence 6532110 1 01233 2333432 38999999998532 35677776666678998887 9
Q ss_pred HHHHHHHHhcCCCcEEEEeeeeccCce----eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceee
Q 017726 157 SKVRKLLDEYRHPALFLVDGVSSICAI----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF 232 (367)
Q Consensus 157 ~~i~~~~~~~~~~~~vi~D~~~~~~~~----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~ 232 (367)
++|.++|++ ||+++|+|++|+.... ..+......|++ |++|+++++.++|++++++++++.+.......
T Consensus 225 ~~l~~l~~~--~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~--- 297 (453)
T 2cy8_A 225 REGAELARQ--YGALFILDEVISGFRVGNHGMQALLDVQPDLT--CLAKASAGGLPGGILGGREDVMGVLSRGSDRK--- 297 (453)
T ss_dssp HHHHHHHHH--TTCEEEEECTTTTTTTCTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECHHHHTTSSSCC------
T ss_pred HHHHHHHHH--cCCEEEEecCccccccCchhhhHHhCCCCcEE--EEChhhhCCcceEEEechHHHHHHhccccCCC---
Confidence 999999999 9999999999983211 011112245766 56799976556899999999887665410000
Q ss_pred chHHHHHHhhcCCccCCCCcHHHHHHHHHHHHH-HHHhChHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCCCc
Q 017726 233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL-IFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFSDT 307 (367)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~-~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~ 307 (367)
...+. .++.+...+++..++++. + .+ +..++..++++++++.|+++ ++....+ ..+.
T Consensus 298 --------~~~~~--t~~~n~~~~aa~~aal~~~~-~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~g~ 359 (453)
T 2cy8_A 298 --------VLHQG--TFTGNPITAAAAIAAIDTIL-ED---DVCAKINDLGQFAREAMNHLFARKGLNWLAY----GRFS 359 (453)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHH-HT---THHHHHHHHHHHHHHHHHHHHHHTTCCEEEE----CCTT
T ss_pred --------ceeCC--CCCCCHHHHHHHHHHHHHHh-hh---hHHHHHHHHHHHHHHHHHHHHhhCCCcEEEE----Eeee
Confidence 00111 335666666777778877 6 43 34567788888888888764 3322111 2345
Q ss_pred eEEEEcCC-----C--------------CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 308 VTAVIVPS-----H--------------INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 308 ~~~~~~~~-----~--------------~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
++++.+++ . .+..++++.|.++ ||.+.++ ..+|+++....++.+...++|+
T Consensus 360 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gv~v~~~------~~~~l~~~~t~~~i~~~l~~l~ 429 (453)
T 2cy8_A 360 GFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILE-GVDIGGR------GSVFLSAQHEREHVEHLVTTFD 429 (453)
T ss_dssp EEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHT-TEECBTT------TEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEEEeccccccccccccccccccccHHHHHHHHHHHHHC-CeEEeCC------CCEEeeccCCHHHHHHHHHHHH
Confidence 77888753 1 1146788888764 9998542 2377764333344444444443
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-21 Score=176.61 Aligned_cols=315 Identities=11% Similarity=-0.037 Sum_probs=193.1
Q ss_pred CCCCChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHh-cCC--CC-ceEEecCChhHHHHHHHH----ccCCCCC
Q 017726 16 GPVHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIF-KTT--SG-TPFLIPTTGTGAWESALT----NTLSPGD 85 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~-~~~--~~-~~v~~~~ggt~al~~~~~----~~~~~gd 85 (367)
|.+++.+.|.+|....... ...|.+..+..++|+.+++++ |.. .. ...+-|.|||+|+..++. .+.+|||
T Consensus 59 g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd 138 (420)
T 4h51_A 59 GRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETT 138 (420)
T ss_dssp SCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTS
T ss_pred CCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCC
Confidence 3556778888876543222 223444566778999998875 322 11 223557888888876553 4568999
Q ss_pred eEEEEeCCcchHHHHHHHHHhCCce-EEEeCC--CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHH
Q 017726 86 RIISFLIGQFSLLWIDQQQRLNFNV-DVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKV 159 (367)
Q Consensus 86 ~vl~~~~~~~~~~~~~~~~~~g~~~-~~v~~~--~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i 159 (367)
.|++++|.|..+. .+.+..|.+. ...+.. ..+.+|.+.+.+.+...+ +++++++++.||||||..++ +++|
T Consensus 139 ~V~ip~P~w~~y~--~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~-~~~~vll~~~p~NPtG~~~~~~~~~~i 215 (420)
T 4h51_A 139 PIYLSDPTWPNHY--GVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAP-DGSVFILHQCAHNPTGVDPSQEQWNEI 215 (420)
T ss_dssp CEEEEESCCTHHH--HHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSC-SSCEEEEESSSCTTTCCCCCHHHHHHH
T ss_pred EEEEecCCchhHH--HHHHHcCCeEEEeeccccccccCCCHHHHHHHHhccC-CCcEEEEeCCCCCCCCCCCCHHHHHHH
Confidence 9999999777654 4567788764 343332 345678999888887655 67888899999999999986 6678
Q ss_pred HHHHHhcCCCcEEEEeeeeccCcee-e--c-------cccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCC
Q 017726 160 RKLLDEYRHPALFLVDGVSSICAID-F--R-------MDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKS 227 (367)
Q Consensus 160 ~~~~~~~~~~~~vi~D~~~~~~~~~-~--~-------~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~ 227 (367)
.++|++ +++++++|++|...... . + ......-+++.|+||.++ .+| +|++++..+..+......
T Consensus 216 ~~~~~~--~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~G~RvG~~~~~~~~~~~~~~~~- 291 (420)
T 4h51_A 216 ASLMLA--KHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMG-LYSERAGTLSLLLKDKTKRADVK- 291 (420)
T ss_dssp HHHHHH--HTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC-CGGGCEEEEEEECSCHHHHHHHH-
T ss_pred HHHHHh--cCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccc-cccCceEEEEecccCHHHHHHHH-
Confidence 888888 99999999998654321 0 0 111123588889999884 555 698887655433322110
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHH--H-H--HhChHHHHHHHHHHHHHHHHHHHHcCC----cccc
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL--I-F--EEGLENVIERHRRLGKATRLAVEAWGL----KNCT 298 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~--~-~--~~g~~~~~~~~~~~~~~l~~~L~~~g~----~~~~ 298 (367)
.......... ...++..+.......+.. + . +..++.+++++.+.++.+.+.|++.|. ..+.
T Consensus 292 --------~~l~~~~r~~--~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~ 361 (420)
T 4h51_A 292 --------SVMDSLIREE--YTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVI 361 (420)
T ss_dssp --------HHHHHHHHTT--TSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHH
T ss_pred --------HHHHHhhhcc--cCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeec
Confidence 0001111111 113444333333333321 1 1 112678889999999999999999753 2233
Q ss_pred CCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCC-CHHHHHHhhhh
Q 017726 299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHL-NEVMFNFQLLF 365 (367)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~-~~~~~~~~~l~ 365 (367)
+ ..+.+.+ + +++. +.++.|. +++|++.++. |||+.+-. +..+...++|.
T Consensus 362 ~----q~GmF~~--~--gls~-e~v~~L~-e~~Vy~~~~g--------Ris~Agl~~~ni~~~a~aI~ 411 (420)
T 4h51_A 362 N----QIGMFSF--L--GLSK-AQCEYCQ-NHNIFITVSG--------RANMAGLTHETALMLAQTIN 411 (420)
T ss_dssp H----CCSSEEE--C--CCCH-HHHHHHH-HTTEECCTTC--------EEEGGGCCHHHHHHHHHHHH
T ss_pred C----CCceEEe--c--CcCH-HHHHHHH-hCCEEEcCCC--------EEEeccCCHHHHHHHHHHHH
Confidence 3 3443332 2 3454 4557774 6699887531 99976633 33444444443
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-21 Score=185.51 Aligned_cols=225 Identities=12% Similarity=0.071 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC-C
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG-E 119 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~ 119 (367)
.....++++.+|+++|.+. .+++++|++.|+..++.+++++||.|++..+.|.|.. ..+...|++++.++.+.+ +
T Consensus 194 ~g~i~eaE~~lA~~fGa~~--a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~--~~l~lsGa~pv~v~~~~~~~ 269 (715)
T 3n75_A 194 SGPHKEAEQYIARVFNADR--SYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLT--HLMMMSDVTPIYFRPTRNAY 269 (715)
T ss_dssp BTHHHHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHH--HHHHHSCCEEEEECCCBCTT
T ss_pred cHHHHHHHHHHHHHhCCCC--ceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHH--HHHHHcCCEEEEEecccccc
Confidence 3557899999999999875 4566666679999999999999999999999998865 346788999999886532 2
Q ss_pred C----C-----CHHHHHHHHhccCC-CCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCce--e-e-
Q 017726 120 G----A-----KLDVLASKLAADTA-HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI--D-F- 185 (367)
Q Consensus 120 ~----~-----d~e~l~~~i~~~~~-~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~--~-~- 185 (367)
. + |++++++++++++. ++++++++++| |++|.+.|+++|.++|++ ++ +++|++|+.+.. + .
T Consensus 270 gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~--~~--livDEAH~~~~~f~~~~~ 344 (715)
T 3n75_A 270 GILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDV--KS--IHFDSAWVPYTNFSPIYE 344 (715)
T ss_dssp CCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCC--SE--EEEECTTCTTGGGSGGGT
T ss_pred ccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCc--Cc--EEEccccccccccCCccc
Confidence 2 3 89999999987531 23458999999 999999999999999987 63 789999986531 1 1
Q ss_pred --cccccc--ceEE---EecCCCcccCCCcceeeeeCHHHH-HHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHH
Q 017726 186 --RMDEWG--IDVA---LTGSQKALSLPTGMGIVCASPKAL-EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLY 257 (367)
Q Consensus 186 --~~~~~~--~d~~---~~s~~K~~~g~~g~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (367)
.....+ +|++ +.|+||+++|+.+.|++.++++.. +++.. ....+ ...+++...++
T Consensus 345 ~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~------------~~~~~-----~STSpsy~~~A 407 (715)
T 3n75_A 345 GKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNE------------AYMMH-----TTTSPHYGIVA 407 (715)
T ss_dssp TSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHH------------HHHHT-----SCSSCCHHHHH
T ss_pred cccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHH------------HHHhh-----cCCCchHHHHH
Confidence 111112 5655 899999998887779998876521 11110 00111 13368899999
Q ss_pred HHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHc
Q 017726 258 GLRAALDLIFE-EGLENVIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 258 al~~al~~~~~-~g~~~~~~~~~~~~~~l~~~L~~~ 292 (367)
++.++++.+.. .| ++++++..++++++++.|+++
T Consensus 408 sldaA~~~~~~~~g-~~~~~~l~~~a~~~r~~L~~i 442 (715)
T 3n75_A 408 STETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRL 442 (715)
T ss_dssp HHHHHHHHHSHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHh
Confidence 99999998874 44 557889999999999999886
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.6e-22 Score=182.17 Aligned_cols=306 Identities=14% Similarity=0.032 Sum_probs=195.0
Q ss_pred ChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHc--cCCCCCeEEEEeCCcc
Q 017726 20 IPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQF 95 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~--~~~~gd~vl~~~~~~~ 95 (367)
.++.+.+++.+.... +.++ ..+...++++.++++++ . .+.+++++||++|+..++.. .+.+++.|++.++.|+
T Consensus 69 ~~p~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~-~-~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yh 145 (424)
T 2e7u_A 69 AHPKVLARVRETLERGLTFGA-PSPLEVALAKKVKRAYP-F-VDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYH 145 (424)
T ss_dssp TCHHHHHHHHHHHHTCSCCSS-CCHHHHHHHHHHHHHCT-T-CCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCC
T ss_pred CCHHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHhCC-C-CCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcC
Confidence 467788887765432 2221 23567789999999986 3 34699999999999998875 2334578999988887
Q ss_pred hHHHHHH--H----------HHhCC------ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc--
Q 017726 96 SLLWIDQ--Q----------QRLNF------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN-- 155 (367)
Q Consensus 96 ~~~~~~~--~----------~~~g~------~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~-- 155 (367)
+...... + ...|+ ++..++. .|++++++++++.. +++++|++++.++++|.+.|
T Consensus 146 g~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~-~~~~~vi~ep~~~~~G~~~~~~ 219 (424)
T 2e7u_A 146 GHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-----NDPEGLREVLKRRG-EEIAAIIFEPVVGNAGVLVPTE 219 (424)
T ss_dssp CCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-----TCHHHHHHHHHHHG-GGEEEEEECSSBCTTSCBCCCH
T ss_pred CCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-----CCHHHHHHHHHhCC-CCEEEEEEeCCCCCCCCcCCCH
Confidence 6421100 0 01122 3444543 38999999987432 24566655544455898887
Q ss_pred --HHHHHHHHHhcCCCcEEEEeeeeccCce--e--eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCc
Q 017726 156 --LSKVRKLLDEYRHPALFLVDGVSSICAI--D--FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR 229 (367)
Q Consensus 156 --~~~i~~~~~~~~~~~~vi~D~~~~~~~~--~--~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~ 229 (367)
+++|.++ ++ +|+++|+|++|+.... . .+......|++ |++|+++++..+|++++++++++.+.... .
T Consensus 220 ~~l~~l~~l-~~--~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~~~~~~~~~~~~~~~~--~ 292 (424)
T 2e7u_A 220 DFLKALHEA-KA--YGVLLIADEVMTGFRLAFGGATELLGLKPDLV--TLGKILGGGLPAAAYAGRREIMEKVAPLG--P 292 (424)
T ss_dssp HHHHHHHHG-GG--GTCEEEEECTTTTTTSSTTHHHHHHTCCCSEE--EECGGGGTTSSCEEEEECHHHHTTBTTTS--S
T ss_pred HHHHHHHHH-HH--cCCEEEEecCccccccchhHHHHHhCCCcchh--hhhhhhhCCcceEEEEEcHHHHhhhcccC--C
Confidence 9999999 99 9999999999983211 0 11112235765 66799976545799999999887765411 0
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCC
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFS 305 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~ 305 (367)
.. .+. .++.+...+++..++++.+.+ .++..++..++++++++.|+++ ++....+ ..
T Consensus 293 ~~-----------~~~--t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~ 353 (424)
T 2e7u_A 293 VY-----------QAG--TLSGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVN----RV 353 (424)
T ss_dssp BC-----------CCC--TTCSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEE----EE
T ss_pred cc-----------cCC--CCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEE----ee
Confidence 00 011 335666667777778887765 2456778888888999888774 4322111 12
Q ss_pred CceEEEEcCCC-------------CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 306 DTVTAVIVPSH-------------INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 306 ~~~~~~~~~~~-------------~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
+.++++.+++. .+..++.+.|.+ +||.+.++.. ..+|+++....++.+...++|+
T Consensus 354 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~----~~~~~~~~~t~~~i~~~l~~l~ 421 (424)
T 2e7u_A 354 GSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLD-RGIYWPPSNF----EAAFLSVAHREEDVEKTLEALR 421 (424)
T ss_dssp TTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHT-TTEECCSSSS----SCEECCTTCCHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHH-CCeEEeccCC----CceEeeccCCHHHHHHHHHHHH
Confidence 34778887531 124578888875 5999987642 2477764444444455555554
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.2e-20 Score=166.04 Aligned_cols=260 Identities=13% Similarity=0.083 Sum_probs=174.1
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC----CC
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS----PG 84 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~----~g 84 (367)
+.+.+.+|. .+...+++. +.....++......+++..++.+++|.+.....++++|+|++.++++.+.+. ++
T Consensus 69 r~~g~~hg~-~~~~d~l~~---~~~~~~~~~~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~ 144 (450)
T 3bc8_A 69 RHYRFIHGI-GRSGDISAV---QPKAAGSSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKA 144 (450)
T ss_dssp HTTTCCSCB-CC----------CCSBHHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTC
T ss_pred Cccceecch-hHHHHHHHh---CccccCCcHHHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCC
Confidence 345566666 333333333 1111123334567788999999999999776678889998555444433332 37
Q ss_pred CeEEEEeCCcchHHHHHHHHHhCCceEEEeC---CCCCCCCHHHHHHHHhccCCCCccEEEEEecC-CCccccccHHHHH
Q 017726 85 DRIISFLIGQFSLLWIDQQQRLNFNVDVVES---DWGEGAKLDVLASKLAADTAHTIKAICIVHNE-TATGVTNNLSKVR 160 (367)
Q Consensus 85 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~---~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~-n~tG~~~~~~~i~ 160 (367)
+.|+++...|.|. .+.+...|+.++.++. +..+.+|++.++++|++++ ...+++++.+++ +.+|.+.|+++|.
T Consensus 145 ~~viv~r~aHkSv--~kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~-~~~~~~Vv~t~t~~g~g~~ddl~~Ia 221 (450)
T 3bc8_A 145 KYIIWPRIDQKSC--FKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELG-PEHILCLHSTTACFAPRVPDRLEELA 221 (450)
T ss_dssp CEEEEECCCCHHH--HHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHC-GGGEEEEEEESSCCTTBCCCCHHHHH
T ss_pred CEEEEECCcHHHH--HHHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcC-CCCEEEEEEECCcCCCceecCHHHHH
Confidence 8999998877774 3678889999888865 4456899999999998753 123455555554 3456889999999
Q ss_pred HHHHhcCCCcEEEEeeeeccCceee---c--ccc-ccceEEEecCCCcccCCCcceeeee-CHHHHHHhccCCCCceeec
Q 017726 161 KLLDEYRHPALFLVDGVSSICAIDF---R--MDE-WGIDVALTGSQKALSLPTGMGIVCA-SPKALEASKTAKSVRVFFD 233 (367)
Q Consensus 161 ~~~~~~~~~~~vi~D~~~~~~~~~~---~--~~~-~~~d~~~~s~~K~~~g~~g~g~~~~-~~~~~~~~~~~~~~~~~~~ 233 (367)
++|++ +|+++++|+||+...... . ... .++|+++.|+|||+..+.|.+++.+ +++.++++.... .
T Consensus 222 ~ia~~--~gi~l~VD~A~G~~~~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~~-----~- 293 (450)
T 3bc8_A 222 VICAN--YDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMY-----P- 293 (450)
T ss_dssp HHHHH--HTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHS-----C-
T ss_pred HHHHH--CCCeEEEECCCchhhhhhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHHh-----h-
Confidence 99999 999999999998643221 1 111 2689999999999999988888887 555555543210 0
Q ss_pred hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc----CCcccc
Q 017726 234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCT 298 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~ 298 (367)
++ .+.+.. +.++.++..+..+|+++..++..++++++++.|+++ |+.+..
T Consensus 294 ----------g~---~s~Sps--L~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~ 347 (450)
T 3bc8_A 294 ----------GR---ASASPS--LDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQ 347 (450)
T ss_dssp ----------SC---BCSHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCC
T ss_pred ----------cC---CcccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecC
Confidence 11 011211 445556555566678888888899999999999774 666665
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-18 Score=162.37 Aligned_cols=300 Identities=14% Similarity=0.168 Sum_probs=182.8
Q ss_pred ChHHHHHHHccCCCC----CC-CCcHHHHHHHHHHHHHH----HhcCCCCceEEecCChhHHHHHHHHccC--------C
Q 017726 20 IPDQVIRAMNRNNED----YR-SPAVPALTKTLLEDIKK----IFKTTSGTPFLIPTTGTGAWESALTNTL--------S 82 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~----~~-~~~~~~~~~~~~~~la~----~~~~~~~~~v~~~~ggt~al~~~~~~~~--------~ 82 (367)
-++++.+++.+.... +. .+.. ....++++.+++ +++.. .+.++|++||++|+..++.... .
T Consensus 80 ~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~~~-~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~ 157 (472)
T 1ohv_A 80 SHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAPKG-MSQLITMACGSCSNENAFKTIFMWYRSKERG 157 (472)
T ss_dssp TCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCCTT-CCEEEEESSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCCCC-cCEEEEeCCchhHHHHHHHHHHHHhhhhccC
Confidence 478889998885321 11 1110 111345555444 44322 3469999999999999987642 1
Q ss_pred -----------------CC---CeEEEEeCCcchHHHHHHHHHh--------CCce---EEEeCCC-CC-----------
Q 017726 83 -----------------PG---DRIISFLIGQFSLLWIDQQQRL--------NFNV---DVVESDW-GE----------- 119 (367)
Q Consensus 83 -----------------~g---d~vl~~~~~~~~~~~~~~~~~~--------g~~~---~~v~~~~-~~----------- 119 (367)
|| ++|++.++.|++.... ..... +... ..++.+. ..
T Consensus 158 ~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 236 (472)
T 1ohv_A 158 QSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMG-CLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQ 236 (472)
T ss_dssp TCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHH-HHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHH
T ss_pred cccccccccccccccccccCCCCeEEEECCCcccccHH-HHhcCCCccccccCCCCCCCcccCCCcccCccccccccchh
Confidence 45 8999999988876421 11112 2211 1223221 00
Q ss_pred --CCCHHHHHHHHhccCC--CCccEEEEEecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeec-cCce--eeccc
Q 017726 120 --GAKLDVLASKLAADTA--HTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSS-ICAI--DFRMD 188 (367)
Q Consensus 120 --~~d~e~l~~~i~~~~~--~~~~lv~~~~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~-~~~~--~~~~~ 188 (367)
..|+++|+++++++.. .++++|++.+.+|++|.+.| +++|.++|++ +|+++|+|++|+ ++.. .+...
T Consensus 237 ~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~--~g~lli~DEv~~g~g~~g~~~~~~ 314 (472)
T 1ohv_A 237 EEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRK--HGCAFLVDEVQTGGGSTGKFWAHE 314 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSGGG
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHH--hCCEEEEeCcccCCCCCCCchhcc
Confidence 1267899999875210 16789998888899998877 9999999999 999999999997 3321 12333
Q ss_pred ccc----ceEEEecCCCc-ccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHH
Q 017726 189 EWG----IDVALTGSQKA-LSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAAL 263 (367)
Q Consensus 189 ~~~----~d~~~~s~~K~-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al 263 (367)
..+ +|++++ +|+ ++ | |+++ ++++. .+... ..+. .++.+...+++..+++
T Consensus 315 ~~gv~~~~Di~t~--sK~~l~---G-G~~~-~~~~~-~~~~~----------------~~~~--T~~~~~~~~aaa~aal 368 (472)
T 1ohv_A 315 HWGLDDPADVMTF--SKKMMT---G-GFFH-KEEFR-PNAPY----------------RIFN--TWLGDPSKNLLLAEVI 368 (472)
T ss_dssp GGCCSSCCSEEEE--CGGGSS---E-EEEE-CGGGS-CSSSS----------------SSCC--SSSSCHHHHHHHHHHH
T ss_pred ccCCCCCCCEEEE--cccccc---C-CccC-chhhc-ccccc----------------cccC--ccCccHHHHHHHHHHH
Confidence 333 677654 598 43 3 6665 55531 11110 0111 2345666667777888
Q ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCcc-ccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC
Q 017726 264 DLIFEEGLENVIERHRRLGKATRLAVEAW--GLKN-CTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK 340 (367)
Q Consensus 264 ~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~ 340 (367)
+.+.+.+ +.++..++++++++.|+++ +++. +..-.. . +.++.+.+++..+..++++.|.+ +||.+.++
T Consensus 369 ~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~-~-g~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~--- 439 (472)
T 1ohv_A 369 NIIKRED---LLSNAAHAGKVLLTGLLDLQARYPQFISRVRG-R-GTFCSFDTPDESIRNKLISIARN-KGVMLGGC--- 439 (472)
T ss_dssp HHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEE-E-TTEEEEECSSHHHHHHHHHHHHH-TTEECEEE---
T ss_pred HHHHhCC---HHHHHHHHHHHHHHHHHHHHhhCCCcEEeecC-C-ceEEEEEeCChhHHHHHHHHHHH-CCeEEecC---
Confidence 8877653 4567888899999998875 3431 211011 2 34666776432235678899976 49998874
Q ss_pred CCCcEEEEeecCCCCHHHHH
Q 017726 341 VAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 341 ~~~~~iRi~~~~~~~~~~~~ 360 (367)
...++|+++....+++++.
T Consensus 440 -g~~~iRi~~~~~~t~e~i~ 458 (472)
T 1ohv_A 440 -GDKSIRFRPTLVFRDHHAH 458 (472)
T ss_dssp -TTTEEEECCCTTCCHHHHH
T ss_pred -CCCEEEEECCCCCCHHHHH
Confidence 1468999776666555443
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-21 Score=180.04 Aligned_cols=307 Identities=15% Similarity=0.038 Sum_probs=193.3
Q ss_pred hHHHHHHHccCCCCCCCC-cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCcchH
Q 017726 21 PDQVIRAMNRNNEDYRSP-AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQFSL 97 (367)
Q Consensus 21 ~~~v~~a~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~~~~ 97 (367)
++++.+++.+........ ...+...++.++|+++++ . .+.+++++||++|+..++... ...+++|++.+..|++.
T Consensus 118 ~p~V~~Av~~q~~~~~~~~~~~~~~~~Lae~L~~~~p-~-~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~ 195 (465)
T 2yky_A 118 HPVIRAAVERALAVGLNLSTQTENEALFAEAVCDRFP-S-IDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGG 195 (465)
Confidence 677888887765442211 234667789999999985 2 235899999999999998763 24568899999988876
Q ss_pred HHHHHH--HHhCC--ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----HHHHHHHHHhcCCC
Q 017726 98 LWIDQQ--QRLNF--NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHP 169 (367)
Q Consensus 98 ~~~~~~--~~~g~--~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~~i~~~~~~~~~~ 169 (367)
...... ...|+ .+..++. .|+++++++++++. +++++|++...++++|.+.| +++|+++|++ +|
T Consensus 196 ~~~~~sg~~~~g~~~~~~~~~~-----~d~~~l~~~l~~~~-~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~--~g 267 (465)
T 2yky_A 196 LLNFASGHAPTNAPYHVVLGVY-----NDVEGTADLLKRHG-HDCAAILVEPMLGAGGCVPAERAFLDLLRAEASR--CG 267 (465)
Confidence 432111 12233 2223332 27899999987543 46789988877777998877 8999999999 99
Q ss_pred cEEEEeeeeccCcee----eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCC
Q 017726 170 ALFLVDGVSSICAID----FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGT 245 (367)
Q Consensus 170 ~~vi~D~~~~~~~~~----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (367)
+++|+|++++ +... .+......|++ +++|+++++..+|++++++++++.+........+ ..+
T Consensus 268 ~llI~DEv~~-~r~g~~~a~~~~gv~pDi~--t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~----------~~~- 333 (465)
T 2yky_A 268 ALLIFDEVMT-SRLSGGGAQEMLGISADLT--TLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFA----------HAG- 333 (465)
Confidence 9999999998 5211 11111235654 6789997654579999999998877641000000 112
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCCceEEEEcCC-CC-----
Q 017726 246 FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPS-HI----- 317 (367)
Q Consensus 246 ~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~-~~----- 317 (367)
.++.+...+++..++++.+.++ ...++..++.+++++.|+++ ...+...-. ..+.++++.+++ ..
T Consensus 334 --T~~~npla~aAa~aaL~~l~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~--g~G~~~~i~~~~~~~~~~~~ 406 (465)
T 2yky_A 334 --TFNNNILTMSAGHAALTQIYTR---QAASDLSASGDRFRANLNRIAVENQAPLQFT--GLGSLGTIHFSRAPIRSAGD 406 (465)
Confidence 2345555556666778877664 35567777888888888775 232211101 234456665532 11
Q ss_pred -------CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 318 -------NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 318 -------~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
...++++.|.++ ||.+.++... . +++....++.|...++|+
T Consensus 407 ~~~~d~~~~~~~~~~ll~~-GV~v~p~~~~---~---~s~~~t~edid~~l~~l~ 454 (465)
T 2yky_A 407 VRAADQQLKELFFFHMLRK-GIYLAPRGMY---A---LSLEIADAGRDAFAEALA 454 (465)
Confidence 134688888755 9999875421 1 444444444444444443
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=156.28 Aligned_cols=229 Identities=14% Similarity=0.102 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCC----CCeEEEEeCCcchHHHHHHHHHhCCceEEEeC---C
Q 017726 44 TKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSP----GDRIISFLIGQFSLLWIDQQQRLNFNVDVVES---D 116 (367)
Q Consensus 44 ~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~----gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~---~ 116 (367)
.+.+-..+-+.+|.+.....++++|+|.+++.++.+.+.+ +++||++...|.|.. +.+...|+++++++. +
T Consensus 118 tn~l~ld~L~~~G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~--kAliL~Gl~Pv~V~p~~d~ 195 (501)
T 3hl2_A 118 TNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF--KSMITAGFEPVVIENVLEG 195 (501)
T ss_dssp HHHHHHHHHHHTTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH--HHHHHTTCEEEEECEEEET
T ss_pred HHHHHHHHHHHcCCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHH--HHHHHcCCeEEEEeeeecc
Confidence 3343333333449987655788899997777766665543 499999999998853 667889999999876 2
Q ss_pred CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCc-cccccHHHHHHHHHhcCCCcEEEEeeeeccCceee-----ccccc
Q 017726 117 WGEGAKLDVLASKLAADTAHTIKAICIVHNETAT-GVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF-----RMDEW 190 (367)
Q Consensus 117 ~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~t-G~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~-----~~~~~ 190 (367)
+...+|++.++++|++++ ....++++.++++.. |.+.|+++|.++|++ +|+++++|+||+.-.... .....
T Consensus 196 ~~~~id~e~le~aI~e~g-a~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~--~gIpllVDeAhGah~~~~~~lp~sA~~~ 272 (501)
T 3hl2_A 196 DELRTDLKAVEAKVQELG-PDCILCIHSTTSCFAPRVPDRLEELAVICAN--YDIPHIVNNAYGVQSSKCMHLIQQGARV 272 (501)
T ss_dssp TEEEECHHHHHHHHHHHC-GGGEEEEEEECSCCTTBCCCCHHHHHHHHHH--HTCCEEEECTTCTTCHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHhcC-CCcEEEEEecCCCCCCcccccHHHHHHHHHH--cCCeEEEeCcchhhhhhhhhhHHHHHhc
Confidence 345789999999999863 234455555555443 455899999999999 999999999998643221 11223
Q ss_pred c-ceEEEecCCCcccCCCcceeeee-CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHH
Q 017726 191 G-IDVALTGSQKALSLPTGMGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFE 268 (367)
Q Consensus 191 ~-~d~~~~s~~K~~~g~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~ 268 (367)
| +|+++.|+||++..+.|.++++. ++++++++.... . |+ .+....+.+..++..+..
T Consensus 273 GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~~y-----P-----------Gr-----~S~Spsldl~~tLL~lGr 331 (501)
T 3hl2_A 273 GRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMY-----P-----------GR-----ASASPSLDVLITLLSLGS 331 (501)
T ss_dssp SCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHHTS-----C-----------SC-----BCSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEecccccceeecCceEEEeCCHHHHHHHHHhC-----C-----------CC-----CCCcHHHHHHHHHHHHHH
Confidence 5 99999999999988877566654 556666654321 0 22 223333668888889999
Q ss_pred hChHHHHHHHHHHHHHHHHHHHHc----CCcccc
Q 017726 269 EGLENVIERHRRLGKATRLAVEAW----GLKNCT 298 (367)
Q Consensus 269 ~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~ 298 (367)
.|++++.++..+++++|++.|+++ |.+++.
T Consensus 332 ~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~ 365 (501)
T 3hl2_A 332 NGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLH 365 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcC
Confidence 999999999999999999999995 445544
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-16 Score=144.52 Aligned_cols=241 Identities=15% Similarity=0.118 Sum_probs=157.6
Q ss_pred hHHHHHHHccCCCC---CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCcc
Q 017726 21 PDQVIRAMNRNNED---YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQF 95 (367)
Q Consensus 21 ~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~~ 95 (367)
++++.+++.++... ...+. ....++.+.|++.+.. .+.+.|++|||+|++.++... ....++|+.....|+
T Consensus 105 hp~v~~Av~~q~~~~~~~~~~~--~~~~~lae~l~~~~p~--~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yH 180 (454)
T 4ao9_A 105 APEIRDAVIEAMQGGINLTGHN--LLEGRLARLICERFPQ--IEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYH 180 (454)
T ss_dssp CHHHHHHHHHHHHTCSCCCSEE--SSHHHHHHHHHHHSTT--CSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBC
T ss_pred CHHHHHHHHHHHhcCCCccCCc--HHHHHHHHHHHHhCCC--CCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcC
Confidence 56677777664322 11222 3345777888888753 346999999999999988653 234567888888887
Q ss_pred hHHHHHHH----HHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----HHHHHHHHHhcC
Q 017726 96 SLLWIDQQ----QRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYR 167 (367)
Q Consensus 96 ~~~~~~~~----~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~~i~~~~~~~~ 167 (367)
+......+ .........+|.+ |++.+++.++++. +++.+|++.......|.+.| +++|+++|++
T Consensus 181 G~t~~~~~~~~~~~~~~~~~~~p~n-----d~~~l~~~l~~~~-~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~-- 252 (454)
T 4ao9_A 181 GGVLGFGARPSPTTVPFDFLVLPYN-----DAQTARAQIERHG-PEIAVVLVEPMQGASGCIPGQPDFLQALRESATQ-- 252 (454)
T ss_dssp STTCBBSSSBCTTSCCSEEEEECTT-----CHHHHHHHHHHTG-GGEEEEEECSEESTTTCEECCHHHHHHHHHHHHH--
T ss_pred CccccccccccCccCCCCcccCCCc-----hHHHHHHHHhhcC-CceEEEEeccccCCCCccCCchhhHHHHHHHHhh--
Confidence 74310000 0011223333332 7899999998765 56788999888888998887 8899999999
Q ss_pred CCcEEEEeeeeccCce---eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcC
Q 017726 168 HPALFLVDGVSSICAI---DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLG 244 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~---~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (367)
+|+++|+||++....- .........|+++. .|.++|...+|.+.+++++.+.+.+.... .+ ..+
T Consensus 253 ~g~lLI~DEV~tGR~G~~~a~e~~gv~PDi~t~--gK~lggG~Piga~~~~~ei~~~~~~~~~~-~~----------h~~ 319 (454)
T 4ao9_A 253 VGALLVFDEVMTSRLAPHGLANKLGIRSDLTTL--GKYIGGGMSFGAFGGRADVMALFDPRTGP-LA----------HSG 319 (454)
T ss_dssp HTCEEEEECTTGGGGSTTCHHHHHTCCCSEEEE--EGGGGTTSSCEEEEECHHHHGGGCTTTCS-CC----------CCC
T ss_pred cCCEEEEECCCcCCCccccchhccCCCCcEEEe--ccccCCCCcceeeeeHHHHHHHHhhccCC-cc----------ccC
Confidence 9999999999862110 01112234688866 58887766689999999998877542211 11 113
Q ss_pred CccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc
Q 017726 245 TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 245 ~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 292 (367)
.++.+...+++..++|+.+.++ +..++..++.++|++.|+++
T Consensus 320 ---T~~gnPla~AAala~L~~l~~~---~~~~~~~~~g~~l~~~L~~l 361 (454)
T 4ao9_A 320 ---TFNNNVMTMAAGYAGLTKLFTP---EAAGALAERGEALRARLNAL 361 (454)
T ss_dssp ---TTTTCHHHHHHHHHHHHHTSCH---HHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCCHHHHHHHHHHHHHHhcc---ChhHHHHHHHHHHHHHHHHH
Confidence 2345666666666677776554 45566777777888777664
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-13 Score=127.81 Aligned_cols=310 Identities=12% Similarity=0.076 Sum_probs=188.8
Q ss_pred hHHHHHHHccCCCC--CC--CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCc
Q 017726 21 PDQVIRAMNRNNED--YR--SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQ 94 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~--~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~ 94 (367)
++++.+++.++... +. .....+...++.+.|.++...+..+.+.|++||++|++.++... .....+|+....+|
T Consensus 82 ~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~y 161 (456)
T 4atq_A 82 DPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAY 161 (456)
T ss_dssp CHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCC
T ss_pred CHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEeccc
Confidence 56667776654221 11 11122445577788888886554556899999999999988642 23456888888888
Q ss_pred chHHHHHHHHH------------hCCceEEEeCCCCC------CCCHHHHHHHHh---cc-CCCCccEEEEEecCCCccc
Q 017726 95 FSLLWIDQQQR------------LNFNVDVVESDWGE------GAKLDVLASKLA---AD-TAHTIKAICIVHNETATGV 152 (367)
Q Consensus 95 ~~~~~~~~~~~------------~g~~~~~v~~~~~~------~~d~e~l~~~i~---~~-~~~~~~lv~~~~~~n~tG~ 152 (367)
++......+.. ....+..+|..... ..+.+.+++.++ +. ..+++.+|++.......|.
T Consensus 162 HG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~ 241 (456)
T 4atq_A 162 HGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGF 241 (456)
T ss_dssp CCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTC
T ss_pred CCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCc
Confidence 88532111110 01234555544221 112333333332 11 1146788899888888888
Q ss_pred ccc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhc
Q 017726 153 TNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASK 223 (367)
Q Consensus 153 ~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~ 223 (367)
+.| +++++++|++ ||+++|+||++..... .........|+++++ |.++|...+|.+.+++++.+.+.
T Consensus 242 ~~p~~~fl~~lr~lc~~--~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~g--K~lggg~P~~av~~~~~i~~~~~ 317 (456)
T 4atq_A 242 IVPAEGFLPALSEWAKE--KGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMA--KGIAGGLPLSAITGRADLLDAVH 317 (456)
T ss_dssp BCCCTTHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEEC--GGGGTTSSCEEEEEEHHHHTTSC
T ss_pred cccchhhhHHHHHHHhh--cCCceEecccccccCCccccccccccCCCCchhhhh--hcccCcCCceeeEecHHHHhccc
Confidence 875 8899999999 9999999999875321 122223357998885 77777666899999999877665
Q ss_pred cCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CC-----cc
Q 017726 224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GL-----KN 296 (367)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~-----~~ 296 (367)
+... +. .++.+...+++..++|+.++++++ .++..+..+++.+.|+++ .+ ++
T Consensus 318 ~~~~----------------~~--Tf~gnpla~aaala~L~~i~~~~l---~~~~~~~g~~l~~~L~~l~~~~~~~~~~~ 376 (456)
T 4atq_A 318 PGGL----------------GG--TYGGNPVACAAALAAIDTMEQHDL---NGRARHIEELALGKLRELAAELSAGGGSV 376 (456)
T ss_dssp TTSS----------------CC--SSSSCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCC-----C
T ss_pred ccCC----------------CC--CCCCChHHHHhhHHHHHHHhhccH---HHHHHHHHHHHHHHHHHHHHhcccccCCc
Confidence 4311 21 345677777888889999888764 345566677777777664 11 22
Q ss_pred ccCCCccCCCceEEEEcCCCC----C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 297 CTQKEEWFSDTVTAVIVPSHI----N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~----~---~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
+..-. -.+.++.+.+.+.. + ...+.+.+.++ |+.+.+.- ..++.||+.+....++++++
T Consensus 377 v~~VR--G~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~-Gvl~~~~g--~~~~~irl~PpL~it~~~id 442 (456)
T 4atq_A 377 VGDIR--GRGAMLAIELVQPGSKEPNAELTKAVAAACLKE-GVIILTCG--TYGNVIRLLPPLVISDELLI 442 (456)
T ss_dssp EEEEE--EETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHT-TEECEEEC--TTSCEEEECCCTTCCHHHHH
T ss_pred eEEee--ecceEEEEEEecCCCCCcCHHHHHHHHHHHHHC-CCEEEecC--CCCCEEEEECCCCCCHHHHH
Confidence 22100 12335555552211 1 23577777655 99886531 23568999876666665443
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-13 Score=125.13 Aligned_cols=311 Identities=16% Similarity=0.074 Sum_probs=188.9
Q ss_pred hHHHHHHHccCCCC----CCCC-cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC-------CC-CCeE
Q 017726 21 PDQVIRAMNRNNED----YRSP-AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-------SP-GDRI 87 (367)
Q Consensus 21 ~~~v~~a~~~~~~~----~~~~-~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~-------~~-gd~v 87 (367)
.+++.+++.++... +... ...+...++.++|.++...+- +.+.|++||++|++.++.... .+ ..+|
T Consensus 85 ~p~v~~Ai~~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~~-~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~i 163 (473)
T 4e3q_A 85 HKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFDS-GRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKI 163 (473)
T ss_dssp CHHHHHHHHHHHHHCCCCCCCTTEEEHHHHHHHHHHHHHSSCSS-CEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEE
T ss_pred CHHHHHHHHHHHHhcccccccccccCHHHHHHHHHHHhhCCCCc-cEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceE
Confidence 45666666654321 1111 123445577888888876543 359999999999999886421 23 3467
Q ss_pred EEEeCCcchHHHHHHHHHhC-----------CceEEEeCCC------CCCC-------CHHHHHHHHhccCCCCccEEEE
Q 017726 88 ISFLIGQFSLLWIDQQQRLN-----------FNVDVVESDW------GEGA-------KLDVLASKLAADTAHTIKAICI 143 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g-----------~~~~~v~~~~------~~~~-------d~e~l~~~i~~~~~~~~~lv~~ 143 (367)
+....+|++......+ ..| .....++.+. .+.. ..+++++.+.+...+++.+|++
T Consensus 164 i~~~~~yHG~t~~a~s-~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~ 242 (473)
T 4e3q_A 164 LTRWNAYHGVTAVSAS-MTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFA 242 (473)
T ss_dssp EEETTCCCCSSHHHHH-HSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEE
T ss_pred EEeeceECCCcccccc-ccccccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEe
Confidence 8888888875322211 111 1233343321 1111 1245666665533246778888
Q ss_pred EecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCC-Ccceeee
Q 017726 144 VHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLP-TGMGIVC 213 (367)
Q Consensus 144 ~~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~ 213 (367)
.......|.+.| +++++++|++ +|+++|.||++..+.. .........|+++. .|.++|. ..+|.++
T Consensus 243 EPiqg~gG~~~p~~~fl~~lr~lc~~--~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~--~K~l~gG~~Pl~av~ 318 (473)
T 4e3q_A 243 EPVMGAGGVIPPAKGYFQAILPILRK--YDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIIS--SKNLTAGFFPMGAVI 318 (473)
T ss_dssp CSSBSTTTSBCCCTTHHHHHHHHHHH--TTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEEE--CGGGGTTSSCCEEEE
T ss_pred CCccCCCCceeCCHHHHHHHHHHhcc--cceEEeccCccccCCcccchhHHHhcCCCCChHHh--cccccCCCCCccccc
Confidence 888888888775 8899999999 9999999999875422 11222335788877 5888665 5589999
Q ss_pred eCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-
Q 017726 214 ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW- 292 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~- 292 (367)
+++++.+.+..... ....+..+. .++.+...+++..++|+.++++++ .++..+..++|++.|+++
T Consensus 319 ~~~~i~~~~~~~~~---------~~~~~~hg~--T~~Gnpla~Aaala~L~~i~~~~l---~~~~~~~g~~l~~~L~~l~ 384 (473)
T 4e3q_A 319 LGPELSKRLETAIE---------AIEEFPHGF--TASGHPVGCAIALKAIDVVMNEGL---AENVRRLAPRFEERLKHIA 384 (473)
T ss_dssp ECHHHHHHHHHHHH---------HHSCCCCCC--TTTTCHHHHHHHHHHHHHHHHSSH---HHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHhccccc---------cccccccCC--CCCCCcchhhhhhhhhhhhccccH---HHHHHHHHHHHHHHHHHHh
Confidence 99999887753200 000011132 445677777788888888888764 446677888899988886
Q ss_pred CCccccCCCccCCCceEEEEcCCCC------C-----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 293 GLKNCTQKEEWFSDTVTAVIVPSHI------N-----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 293 g~~~~~~~~~~~~~~~~~~~~~~~~------~-----~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
..+.+..-. -.+.++.+.+.++. + ...+.+.+.++ |+.+++. ++.+|+.+....+++++
T Consensus 385 ~~~~v~~vR--G~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~~-----g~~i~l~PPL~it~~ei 454 (473)
T 4e3q_A 385 ERPNIGEYR--GIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDL-GLICRPL-----GQSVVLCPPFILTEAQM 454 (473)
T ss_dssp TSTTEEEEE--EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECEEE-----TTEEEECCCTTCCHHHH
T ss_pred cCCCeeEEe--ecceEEEEEEecCccccccccccHHHHHHHHHHHHHC-CcEEEec-----CCEEEEeCCCCCCHHHH
Confidence 322222100 12334555542111 1 34577777655 9988752 46799987656665544
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-13 Score=135.10 Aligned_cols=311 Identities=10% Similarity=0.008 Sum_probs=178.8
Q ss_pred hHHHHHHHccCCCC--CCC--CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC-----CC--------
Q 017726 21 PDQVIRAMNRNNED--YRS--PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-----SP-------- 83 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~-----~~-------- 83 (367)
.+++.+|+.++... |.. ....+...++.++|+++.+....+.+.|++||++|++.++...+ ..
T Consensus 399 ~p~i~~Ai~~Q~~~l~h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~ 478 (831)
T 4a0g_A 399 QAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEE 478 (831)
T ss_dssp HHHHHHHHHHHHHHHSSCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC------
T ss_pred CHHHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccc
Confidence 45666666654321 211 11234455888888888864423469999999999998886431 11
Q ss_pred ----CCeEEEEeCCcchHHHHHHHHHhCCc----------------------------eEEEeCCCCCC---------CC
Q 017726 84 ----GDRIISFLIGQFSLLWIDQQQRLNFN----------------------------VDVVESDWGEG---------AK 122 (367)
Q Consensus 84 ----gd~vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~~---------~d 122 (367)
..+||....+|++..+.. +...|.. +..++.+...+ -+
T Consensus 479 ~~~~r~~iI~~~~syHG~T~ga-ls~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 557 (831)
T 4a0g_A 479 EKHIVVKVIALRGSYHGDTLGA-MEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTS 557 (831)
T ss_dssp ---CCEEEEEETTCCCCSSHHH-HHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESC
T ss_pred cccCccEEEEecCCcccCceee-eeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccc
Confidence 236888888888764322 2222210 01122221100 01
Q ss_pred ------------------HHHHHHHHhc-----cCCCCccEEEEEec-CCCcccccc----HHHHHHHHHhcCCCcEEEE
Q 017726 123 ------------------LDVLASKLAA-----DTAHTIKAICIVHN-ETATGVTNN----LSKVRKLLDEYRHPALFLV 174 (367)
Q Consensus 123 ------------------~e~l~~~i~~-----~~~~~~~lv~~~~~-~n~tG~~~~----~~~i~~~~~~~~~~~~vi~ 174 (367)
.+++++.+++ .+ +++.+|++... ++..|.+.+ +++|+++|++ ||+++|+
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~-~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~--~gilLI~ 634 (831)
T 4a0g_A 558 RDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQS-AHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRN--RKIPVIF 634 (831)
T ss_dssp HHHHHCGGGGGSHHHHHHHHHHHHHC----------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHH--TTCCEEE
T ss_pred hhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCC-CcEEEEEEecccccCCCCccCCHHHHHHHHHHHHH--cCCeEEE
Confidence 2567777753 22 46788888875 788888875 8899999999 9999999
Q ss_pred eeeeccCce---ee--ccccccceEEEecCCCcccCC-CcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccC
Q 017726 175 DGVSSICAI---DF--RMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP 248 (367)
Q Consensus 175 D~~~~~~~~---~~--~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (367)
||++..... .+ .......|+++ .+|.++|. ..+|++++++++.+.+....... .+..+. .
T Consensus 635 DEV~tGfGRtG~~fa~e~~gv~PDiit--lsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~----------~~~hg~--T 700 (831)
T 4a0g_A 635 DEVFTGFWRLGVETTTELLGCKPDIAC--FAKLLTGGMVPLAVTLATDAVFDSFSGDSKLK----------ALLHGH--S 700 (831)
T ss_dssp ECTTTTTTTTSBSSTHHHHSSCCSEEE--ECGGGGTTSSCCEEEEECHHHHHTTCSSCGGG----------SCCCCC--T
T ss_pred EcCccccccCCCchhhHhcCCCCcEEE--EecccccCccCcEEEEECHHHHHHHhcccccc----------cceeec--C
Confidence 998763211 11 11123468775 57888764 34799999999988775421000 011122 3
Q ss_pred CCCcHHHHHHHHHHHHHHHHhChHH-HHHHHHHH----HHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCC------
Q 017726 249 YTPSIQLLYGLRAALDLIFEEGLEN-VIERHRRL----GKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSH------ 316 (367)
Q Consensus 249 ~~~~~~~~~al~~al~~~~~~g~~~-~~~~~~~~----~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~------ 316 (367)
++.+...+++..++|+.++++++.+ +.+....+ .+.+.+.+++. .+..+.. .+.++.+.+.++
T Consensus 701 ~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg-----~Gl~~~iel~~~~~~~~~ 775 (831)
T 4a0g_A 701 YSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVV-----IGTLFALELKADASNSGY 775 (831)
T ss_dssp TTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEE-----ETTEEEEEEC--------
T ss_pred CcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEee-----cccEEEEEEecCcccccc
Confidence 4567777778888888887654222 11111111 12344445554 2222221 233555555221
Q ss_pred --CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 317 --INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 317 --~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
....++.+.|.++ ||.+++. ++.+|+++....+++++.
T Consensus 776 ~~~~a~~~~~~l~e~-Gv~v~p~-----g~~lrl~pp~~~t~e~id 815 (831)
T 4a0g_A 776 ASLYAKSLLIMLRED-GIFTRPL-----GNVIYLMCGPCTSPEICR 815 (831)
T ss_dssp -CHHHHHHHHHHHHT-TEECCCB-----TTEEEEECCTTCCHHHHH
T ss_pred chHHHHHHHHHHHHC-CcEEEec-----CCEEEEECCCCCCHHHHH
Confidence 1244688888755 9999864 468999876666655543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 367 | ||||
| d1iuga_ | 348 | c.67.1.3 (A:) Subgroup IV putative aspartate amino | 7e-57 | |
| d2ch1a1 | 388 | c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminas | 6e-52 | |
| d2bkwa1 | 382 | c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransfe | 2e-47 | |
| d1h0ca_ | 388 | c.67.1.3 (A:) Alanine-glyoxylate aminotransferase | 4e-45 | |
| d1vjoa_ | 377 | c.67.1.3 (A:) Alanine-glyoxylate aminotransferase | 4e-44 | |
| d1m32a_ | 361 | c.67.1.3 (A:) 2-aminoethylphosphonate transaminase | 5e-38 | |
| d1bjna_ | 360 | c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT | 8e-20 | |
| d1w23a_ | 360 | c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT | 3e-18 | |
| d2c0ra1 | 361 | c.67.1.4 (A:2-362) Phosphoserine aminotransferase, | 5e-18 | |
| d1jf9a_ | 405 | c.67.1.3 (A:) NifS-like protein/selenocysteine lya | 3e-10 | |
| d1t3ia_ | 408 | c.67.1.3 (A:) Probable cysteine desulfurase SufS { | 1e-05 | |
| d1p3wa_ | 391 | c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich | 0.001 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 0.002 | |
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 0.004 |
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Score = 187 bits (474), Expect = 7e-57
Identities = 78/349 (22%), Positives = 149/349 (42%), Gaps = 17/349 (4%)
Query: 10 NHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTG 69
+ L PGPV + + + A+ R +R+ A + +++ F+T G ++ +G
Sbjct: 1 DWLLTPGPVRLHPKALEALARPQLHHRTEAAREVFLKARGLLREAFRT-EGEVLILTGSG 59
Query: 70 TGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASK 129
T A E+ + N +PG+R++ + G+FS + + V+ ++ +G+ + +
Sbjct: 60 TLAMEALVKNLFAPGERVLVPVYGKFSERFYEIALEAGLVVERLDYPYGDTPRPED---- 115
Query: 130 LAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDE 189
+ +VH+ET+TG +L + + E L D V+S+ + ++
Sbjct: 116 ---VAKEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEA 172
Query: 190 WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPY 249
G+D A +GSQK L P G+G V SP+ALE K K +
Sbjct: 173 MGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEG----ESAW 228
Query: 250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVT 309
TP+I L+ + A L+ + E++ + + + E + FS V
Sbjct: 229 TPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEGG----LRPVPKRFSPAVA 284
Query: 310 AVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358
A +P + + V+ A+ + + G + GKVFR+ +G +
Sbjct: 285 AFYLPEGVPYAR-VKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYE 332
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Score = 175 bits (443), Expect = 6e-52
Identities = 89/361 (24%), Positives = 165/361 (45%), Gaps = 10/361 (2%)
Query: 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
+ + + PGP + +V+ AM + + + ++ IF+T +
Sbjct: 9 LRNPLIIPEKIMMGPGPSNCSKRVLTAMTNTVLSNFHAELFRTMDEVKDGLRYIFQTENR 68
Query: 61 TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
+ + E+ L+N L GDR++ + G ++ ++ +R +V +E
Sbjct: 69 ATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRP 128
Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
L+ LA A H K + + H ++++G+ L V + ++H L +VD V+S+
Sbjct: 129 FSLETLAR---AIELHQPKCLFLTHGDSSSGLLQPLEGVGQ--ICHQHDCLLIVDAVASL 183
Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDW-----K 235
C + F MD+W ID TG+QK L P G+ + SPKAL+ + ++ F W
Sbjct: 184 CGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLG 243
Query: 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLK 295
+Y Y+ + +T + L++ LR AL I EEGLEN I+R + + GL
Sbjct: 244 NYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLD 303
Query: 296 NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLN 355
+ TVT +++P ++ ++ + A ++L + GL GK +R+G +G +
Sbjct: 304 IFVKDPRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECS 363
Query: 356 E 356
Sbjct: 364 T 364
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 163 bits (412), Expect = 2e-47
Identities = 85/363 (23%), Positives = 159/363 (43%), Gaps = 23/363 (6%)
Query: 10 NHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGT---PFLIP 66
+ L +PGP+ + V +A++ + + SP ++ + +L++ + +FK+ + + PF++
Sbjct: 4 DTLLIPGPIILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLA 63
Query: 67 TTGTGAWESALTNTL---SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKL 123
+GT W+ +N + +P ++ G FS + D + VDVV +
Sbjct: 64 GSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVP 123
Query: 124 DVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI 183
+ ++ A+ + H +T+T V ++L + + + + F+VD V SI
Sbjct: 124 LE--LITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCE 181
Query: 184 DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEA-------SKTAKSVRVFFDWKD 236
+F DEWG+D ALT SQKA+ P G+ I S + ++ W
Sbjct: 182 EFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTP 241
Query: 237 YIKFYNLGT-FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG-- 293
++ Y G + TP +QL+ L AL I EEGL + HR + + ++
Sbjct: 242 IMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQL 301
Query: 294 LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK-VAGKVFRIGHLG 352
+ +TAV V + V + + + + G++K + K RIGH+G
Sbjct: 302 TSVSRYPSNMSAHGLTAVYVADPPD----VIAFLKSHGVVIAGGIHKDIGPKYIRIGHMG 357
Query: 353 HLN 355
Sbjct: 358 VTA 360
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 157 bits (396), Expect = 4e-45
Identities = 98/360 (27%), Positives = 158/360 (43%), Gaps = 11/360 (3%)
Query: 1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
+ + P L PGP ++P +++ A S + + + E I+ +F+T +
Sbjct: 12 LKPLSIP-NQLLLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNP 70
Query: 61 TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
+I +G A E+AL N L PGD + G + +D +R+ V + D G
Sbjct: 71 LTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGH 130
Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
L + H + + H E++TGV L +L Y+ LVD V+S+
Sbjct: 131 YTLQEVE---EGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCL--LLVDSVASL 185
Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK----- 235
MD GID+ +GSQKAL+ P G ++ S KA + + K+ F
Sbjct: 186 GGTPLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLA 245
Query: 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLK 295
++ + + +T + LY LR +L LI E+GLEN +HR ++A GL+
Sbjct: 246 NFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQ 305
Query: 296 NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLN 355
+ TVT V VP+ + +IV +++ + GL GKV RIG LG
Sbjct: 306 LFVKDPALRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNA 365
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} Length = 377 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Score = 154 bits (389), Expect = 4e-44
Identities = 101/351 (28%), Positives = 167/351 (47%), Gaps = 8/351 (2%)
Query: 7 PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIP 66
L PGP + V++AMN + + PA AL + ++ +++T + +
Sbjct: 16 VPSRLLLGPGPSNAHPSVLQAMNVSPVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVS 75
Query: 67 TTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVL 126
TGT A E+ + N + PGD ++ + G F +D R +V + WGE L
Sbjct: 76 GTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEV---FSL 132
Query: 127 ASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR 186
A H + +VH ET+TG L V +L E L LVD V+S+ +
Sbjct: 133 EELRTALETHRPAILALVHAETSTGARQPLEGVGELCRE--FGTLLLVDTVTSLGGVPIF 190
Query: 187 MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS--VRVFFDWKDYIKFYNLG 244
+D WG+D+A + SQK L G S +A+E + ++ + D K++
Sbjct: 191 LDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSE 250
Query: 245 TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWF 304
+ +T I L Y LR AL LI +EGL N +RH++ + +E GL + +E+
Sbjct: 251 RVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVE-KEYR 309
Query: 305 SDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLN 355
T+T V +P ++ + RR +N+ +G GL ++AGKV+R+G +G +
Sbjct: 310 LPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNS 360
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Score = 137 bits (345), Expect = 5e-38
Identities = 70/351 (19%), Positives = 133/351 (37%), Gaps = 11/351 (3%)
Query: 12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLIPTTGT 70
L PGP+ V AM ++ + + + + + + + + G T L+ +G+
Sbjct: 3 LLTPGPLTTSRTVKEAMLFDSCTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGS 62
Query: 71 GAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKL 130
A E+ L + L P D+++ G + ++ + + + DV A
Sbjct: 63 YAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVA--RPDVQAIDA 120
Query: 131 AADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW 190
+ TI I +VH+ET TG+ N + +V +R+ ++VD +SS I +
Sbjct: 121 ILNADPTISHIAMVHSETTTGMLNPIDEVGA--LAHRYGKTYIVDAMSSFGGIPMDIAAL 178
Query: 191 GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT 250
ID ++ + K + G V A + L A K + + + W +T
Sbjct: 179 HIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFT 238
Query: 251 PSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTA 310
+ AL + +EG + + + + +A N +E S +TA
Sbjct: 239 SPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITA 298
Query: 311 VIVPSH--INSSEIVRRAWQR-YNLSLGLGLNKVAGKVFRIGHLGHLNEVM 358
P SE RR ++ + + G FRIG++G +
Sbjct: 299 FYSPEDPQYRFSEFYRRLKEQGFVIYPGKVS---QSDCFRIGNIGEVYAAD 346
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} Length = 360 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Score = 87.5 bits (215), Expect = 8e-20
Identities = 39/352 (11%), Positives = 96/352 (27%), Gaps = 30/352 (8%)
Query: 11 HLFVPGPVHIPDQVIRAMNRNNEDY------------RSPAVPALTKTLLEDIKKIFKTT 58
F GP +P +V++ + D+ R + + +D + +
Sbjct: 3 FNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVP 62
Query: 59 SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG 118
S L G +A+ + ++ + ++ + +V ++
Sbjct: 63 SNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVT 122
Query: 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178
L + + + NET G+ ++ + D S
Sbjct: 123 VDG-LRAVKPMREWQLSDNAAYMHYCPNETIDGIAI------DETPDFGADVVVAADFSS 175
Query: 179 SICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYI 238
+I + + +G+ A G+QK + ++ K+ DY
Sbjct: 176 TILSRPIDVSRYGVIYA--GAQKNIGPAGLTIVIVRED------LLGKANIACPSILDYS 227
Query: 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCT 298
+ G+ + P+ L G+ + + +++ + ++
Sbjct: 228 ILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRND 287
Query: 299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGH 350
+ S + + + L G V G R
Sbjct: 288 VAKRNRSRMNVPFQLADSALDKLFLEES-FAAGLHALKGHRVVGG--MRASI 336
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} Length = 360 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Score = 82.8 bits (203), Expect = 3e-18
Identities = 31/334 (9%), Positives = 95/334 (28%), Gaps = 30/334 (8%)
Query: 9 KNHLFVPGPVHIPDQVIRAMNRNNEDY------------RSPAVPALTKTLLEDIKKIFK 56
+ F GP +P + + ++ RS + + + ++++ +
Sbjct: 3 QVFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQ 62
Query: 57 TTSG-TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES 115
+ + + + N L+ G L G +S + + + L +
Sbjct: 63 IPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAAST 122
Query: 116 DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD 175
+ + + + + T ++ + + + A + D
Sbjct: 123 KANSYQSIPDFSEFQLNENDA--------YLHITSNNTIYGTQYQNFPE--INHAPLIAD 172
Query: 176 GVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK 235
S I + +++++G+ A G+QK L ++ + ++ +
Sbjct: 173 MSSDILSRPLKVNQFGMIYA--GAQKNLGPSGVTVVIVKKDLLNTKVEQVPTMLQYATHI 230
Query: 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLK 295
YN + +L + + E+ G
Sbjct: 231 KSDSLYNTPPTFSIYMLRNVLDW-----IKDLGGAEAIAKQNEEKAKIIYDTIDESNGFY 285
Query: 296 NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQR 329
++ S + + + + + +A ++
Sbjct: 286 VGHAEKGSRSLMNVTFNLRNEELNQQFLAKAKEQ 319
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Score = 82.0 bits (201), Expect = 5e-18
Identities = 47/375 (12%), Positives = 92/375 (24%), Gaps = 41/375 (10%)
Query: 9 KNHLFVPGPVHIPDQVIRAMNRNNEDY------------RSPAVPALTKTLLEDIKKIFK 56
+ + F GP +P +V+ DY R A+ + +
Sbjct: 3 RAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLG 62
Query: 57 TTSG-TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES 115
+G I + + N L G + G ++ + + + + S
Sbjct: 63 NPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASS 122
Query: 116 DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD 175
+ L L + + NET G + +
Sbjct: 123 EASNYMTLPKLQ---EIQLQDNAAYLHLTSNETIEGAQ---------FKAFPDTGSVPLI 170
Query: 176 GVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK 235
G S + D + G+QK L ++ E+ K ++ + +
Sbjct: 171 GDMSSDILSRPFDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYV 230
Query: 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLK 295
YN + ++ ++ G
Sbjct: 231 KNNSLYNTPPSFGIYM-----VNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFY 285
Query: 296 NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH-- 353
+ SD + S E V+ + Q G V G R
Sbjct: 286 RGCVDVDSRSDMNITFRLASEELEKEFVKASEQE-GFVGLKGHRSVGG--LRASIYNAVP 342
Query: 354 ------LNEVMFNFQ 362
L + M +F+
Sbjct: 343 YESCEALVQFMEHFK 357
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Score = 59.2 bits (142), Expect = 3e-10
Identities = 53/303 (17%), Positives = 95/303 (31%), Gaps = 27/303 (8%)
Query: 20 IPDQVIRAMNR-NNEDYRSP-----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAW 73
P QVI A Y + + A +E+++K
Sbjct: 34 KPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGT 93
Query: 74 ESALTNTLS--------PGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKL 123
+ + GD II + + + W R+ + V+ + +L
Sbjct: 94 TEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQL 153
Query: 124 DVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI 183
+ L + T + + I H G N L+++ L + H A LVDG ++
Sbjct: 154 ETLPTLFDEKT----RLLAITHVSNVLGTENPLAEMITLAHQ--HGAKVLVDGAQAVMHH 207
Query: 184 DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL 243
+ D + K PTG+GI+ L+ + +
Sbjct: 208 PVDVQALDCDFYVFSGHKLYG-PTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTW 266
Query: 244 GT----FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQ 299
F TP+ + GL AAL+ + GL N+ E + L +E+
Sbjct: 267 TKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYG 326
Query: 300 KEE 302
+
Sbjct: 327 PQN 329
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Score = 44.2 bits (103), Expect = 1e-05
Identities = 58/280 (20%), Positives = 94/280 (33%), Gaps = 26/280 (9%)
Query: 20 IPDQVIRAMNRNNEDYRSPAVPAL------TKTLLED----IKKIFKTTSGTPFLIPTTG 69
P V+ + E+ + E + K S +
Sbjct: 34 KPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNA 93
Query: 70 TGA----WESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKL 123
T A S N L GD II+ ++ S L W + + V+ D E L
Sbjct: 94 TEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDL 153
Query: 124 DVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI 183
+ + L+ T K + +VH G N ++ +L ++ A LVD S
Sbjct: 154 EHFKTLLSEKT----KLVTVVHISNTLGCVNPAEEIAQL--AHQAGAKVLVDACQSAPHY 207
Query: 184 DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASK--TAKSVRVFFDWKDYIKFY 241
+ D L S + PTG+G + + LEA + + D+
Sbjct: 208 PLDVQLIDCDW-LVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTG 266
Query: 242 NLGT-FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRR 280
L F TP+I L AA+D + + G+EN+
Sbjct: 267 ELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVE 306
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Score = 38.0 bits (87), Expect = 0.001
Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 23/216 (10%)
Query: 20 IPDQVIRAMNRNNEDYRSPAVPA--------LTKTLLED----IKKIFKTTSGTPFLIPT 67
+ +V M + + PA + ++ I +
Sbjct: 14 VDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSG 73
Query: 68 TGTGAW---ESALTNTLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKL 123
+ A G II+ ++L Q +R F V + L
Sbjct: 74 ATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDL 133
Query: 124 DVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI 183
L + + DT + I+H GV +++ + ++ ++ VD S+ +
Sbjct: 134 KELEAAMRDDT----ILVSIMHVNNEIGVVQDIAAIGEM--CRARGIIYHVDATQSVGKL 187
Query: 184 DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKAL 219
+ + +D+ K G+G + K
Sbjct: 188 PIDLSQLKVDLMSFSGHKIYGPK-GIGALYVRRKPR 222
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 37.1 bits (85), Expect = 0.002
Identities = 26/204 (12%), Positives = 59/204 (28%), Gaps = 16/204 (7%)
Query: 15 PGPVHIPDQVIRAMNRNNEDYRSPA-VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAW 73
P HI + A+++ Y + L + + E +KK + I
Sbjct: 38 DTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQ 97
Query: 74 ESALTNT--LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA 131
+ + L G+ ++ S + V + + +L+V L
Sbjct: 98 AFLMGLSAFLKDGEEVLIPTPAFVS--YAPAVILAGGKPVEVPTYEEDEFRLNVDE--LK 153
Query: 132 ADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD---------GVSSICA 182
+A+ I TG + ++ D L ++ + +
Sbjct: 154 KYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYS 213
Query: 183 IDFRMDEWGIDVALTGSQKALSLP 206
I + + + G K ++
Sbjct: 214 IASLDGMFERTITVNGFSKTFAMT 237
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 36.3 bits (83), Expect = 0.004
Identities = 31/220 (14%), Positives = 68/220 (30%), Gaps = 17/220 (7%)
Query: 15 PGPVHIPDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTG-TGA 72
P HI + A+ + Y + P L + + + +++ G ++ T G +
Sbjct: 43 NTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQS 102
Query: 73 WESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA 132
+ + + PGD +I S + + + + + + +
Sbjct: 103 IFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP 162
Query: 133 DTAHTIKAICIVHNETATGVTNNL----------SKVRKLLDEYRHPALFLVDGVSSICA 182
T + N T T + + + L DE L+ SI A
Sbjct: 163 KTKLLV--FNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGA 220
Query: 183 IDFRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEA 221
E + +G K ++ +G + ++A
Sbjct: 221 ASPEAYERSVV--CSGFAKTYAMTGWRVGFLAGPVPLVKA 258
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 367 | |||
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 100.0 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 100.0 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 100.0 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 100.0 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 100.0 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 100.0 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 100.0 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 100.0 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 100.0 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 100.0 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.98 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.97 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.97 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.97 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.97 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.97 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.97 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.97 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.97 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.97 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.97 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.97 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.97 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.96 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.96 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.96 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.96 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.96 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.96 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.96 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.96 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.95 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.95 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.95 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.94 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.94 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.94 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.92 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.92 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.92 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.92 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.92 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.91 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.91 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.91 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.91 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.9 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.9 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.9 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.9 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.89 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.88 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.88 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.88 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.88 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.88 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.87 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.87 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.86 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.86 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.86 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.86 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.86 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.85 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.83 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.83 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.82 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.82 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.8 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.76 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.73 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.72 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.67 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.65 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.64 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 99.64 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.6 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.6 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.59 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.54 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.38 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 81.01 | |
| d3bula2 | 156 | Methionine synthase, C-terminal domain {Escherichi | 80.99 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 80.48 |
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-44 Score=329.32 Aligned_cols=354 Identities=29% Similarity=0.384 Sum_probs=303.6
Q ss_pred CCCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCe
Q 017726 7 PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR 86 (367)
Q Consensus 7 ~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~ 86 (367)
-.+.++|.|||.+++++|+++|.....+|++..+.++++++++.+++++|+++++.|++++|||+++++++.+++.+|++
T Consensus 17 ~~~~~l~~pGP~~~~~~Vl~am~~~~i~HRs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~~~~~~ 96 (388)
T d1h0ca_ 17 IPNQLLLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLEPGDS 96 (388)
T ss_dssp CCCCEECSSSCCCCCHHHHHHHTCCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCSSCC
T ss_pred CCcCccccCCCCCCCHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhhccCCc
Confidence 34679999999999999999999988889999999999999999999999998877999999999999999999999999
Q ss_pred EEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhc
Q 017726 87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY 166 (367)
Q Consensus 87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~ 166 (367)
+++...++++..+...+...+..+..++.+....+|.+++++.+.+ ++++++++++.+|.||.+.|+++|.++|++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~n~tG~i~pi~~i~~~~~~- 172 (388)
T d1h0ca_ 97 FLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQ---HKPVLLFLTHGESSTGVLQPLDGFGELCHR- 172 (388)
T ss_dssp EEECBSSHHHHHHHHHHHHHC--CBCCBCCTTCCCCHHHHHHHHHH---HCCSEEEEESEETTTTEECCCTTHHHHHHT-
T ss_pred eeeecccceeeeeccccccccccccccccCCccccchHHHHHHhcc---CCcceEEEeeeeeccccccCHHHHHHHhhc-
Confidence 9999999999887777888888888888888888899998888775 467999999999999999999999999999
Q ss_pred CCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCc--eeechHHHHHH---h
Q 017726 167 RHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR--VFFDWKDYIKF---Y 241 (367)
Q Consensus 167 ~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~ 241 (367)
+|+++++|++|+.+..++++..+++|++++|+|||++||.|+|+++.++..++.+....... .+.+....... .
T Consensus 173 -~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (388)
T d1h0ca_ 173 -YKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCD 251 (388)
T ss_dssp -TTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCS
T ss_pred -ccccceeccccccccccccccccccceecccccccccCCCceEEEeecHHHHHhhhhccccccccccccchhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999988877654332 23333332221 1
Q ss_pred hcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHH
Q 017726 242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSE 321 (367)
Q Consensus 242 ~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (367)
....++.+|++...+.++.+++..+.+.|++.+.++..++.+++++.++.+|+.+..+++..++..++.|.+|++.+.++
T Consensus 252 ~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~~~~p~~~~~~~ 331 (388)
T d1h0ca_ 252 DQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGYDWRD 331 (388)
T ss_dssp SSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCHHH
T ss_pred cccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhcCcccccCCHHHcCCeEEEEECCCCCCHHH
Confidence 12234567899999999999999999999999999999999999999999987777766666788889999988999999
Q ss_pred HHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCH--HHHHHhhhh
Q 017726 322 IVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNE--VMFNFQLLF 365 (367)
Q Consensus 322 l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~--~~~~~~~l~ 365 (367)
+.+.|.+++||.+..|.....++.||||.++ +.+. .|....+|+
T Consensus 332 ~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~ 378 (388)
T d1h0ca_ 332 IVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALR 378 (388)
T ss_dssp HHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 9999988889999999988888999999544 4443 444455544
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.2e-43 Score=314.98 Aligned_cols=335 Identities=24% Similarity=0.368 Sum_probs=286.8
Q ss_pred cccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEE
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIIS 89 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~ 89 (367)
+|||.|||.+++++|+++|.+...+|++..+.+..+++++.++++++.+. +.+++++|||.++.+++.+++.+|+++++
T Consensus 1 ~~L~~PGP~~v~~~V~~am~~~~~~hr~~~f~~i~~~~~~~l~~ll~~~~-~~i~~~gsgT~a~e~~~~nl~~~g~~vlv 79 (348)
T d1iuga_ 1 DWLLTPGPVRLHPKALEALARPQLHHRTEAAREVFLKARGLLREAFRTEG-EVLILTGSGTLAMEALVKNLFAPGERVLV 79 (348)
T ss_dssp CEECSSSSCCCCHHHHHHHHSCCCCTTSHHHHHHHHHHHHHHHHHHTCSS-EEEEEESCHHHHHHHHHHHHCCTTCEEEE
T ss_pred CcccCCCCCCCCHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhCCCC-CEEEEeCchHHHHHHHHHhccccccccee
Confidence 47999999999999999999988889999999999999999999999865 46899999999999999999999999999
Q ss_pred EeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCC
Q 017726 90 FLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHP 169 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~ 169 (367)
...++|+.++...++..+.++..++.+....++++++. . ++++.++++|..|.||.+.|++++.++|+++.++
T Consensus 80 ~~~G~f~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~---~----~~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~ 152 (348)
T d1iuga_ 80 PVYGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVA---K----EGYAGLLLVHSETSTGALADLPALARAFKEKNPE 152 (348)
T ss_dssp EECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTSC---C----SSCSEEEEESEETTTTEECCHHHHHHHHHHHCTT
T ss_pred ecchHHHHHHHHHHHhcCcccccccccCCCcccccccc---c----cCCCeeEEEecchhhhhhccHHHHHHHHHhhhcc
Confidence 99999999988899999999999988766555554421 1 5779999999999999999999999999996567
Q ss_pred cEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCC
Q 017726 170 ALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPY 249 (367)
Q Consensus 170 ~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (367)
+++++|+++++++.+++++.+++|++++++||++.||+|+|+++++++.++++.+ .++++|+..+....+.+ .+++
T Consensus 153 ~l~~vDavss~g~~~i~~d~~~iD~~~~~sqK~l~gppG~~~v~~s~~~le~~~~---~~~~~dl~~~~~~~~~~-~~~~ 228 (348)
T d1iuga_ 153 GLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKP---RGYYLDLARELKAQKEG-ESAW 228 (348)
T ss_dssp CEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCC---CSSTTCHHHHHHHHTTT-CCSS
T ss_pred ceeechhhhcccccccccccccCCEEEeccccceecCCceeeeeechHHHhhhcc---cccccchhhhhhhhccC-cccc
Confidence 8999999999999999999999999999999999999999999999999888764 35677877766555544 3588
Q ss_pred CCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhh
Q 017726 250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQR 329 (367)
Q Consensus 250 ~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 329 (367)
||++..++++..+++.+.+.+ .+..++.+.....++..++..|+...... +++.++.|++|++++..++.+.|.+
T Consensus 229 Tp~v~~i~~l~~aL~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gl~~~~~~---~s~~v~~~~~P~g~~~~~~~~~l~~- 303 (348)
T d1iuga_ 229 TPAINLVLAVAAVLEEVLPRL-EEHLALKAWQNALLYGVGEEGGLRPVPKR---FSPAVAAFYLPEGVPYARVKEAFAQ- 303 (348)
T ss_dssp CCCHHHHHHHHHHHHHHGGGH-HHHHHHHHHHHHHHHHHHHHTTCEESCSS---BCTTCEEEECCTTCCHHHHHHHHHT-
T ss_pred cccchHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHhhhhhhhhhccChhh---cCCeEEEEECCCCCCHHHHHHHHHH-
Confidence 999999999999999887775 33344555555666666666788876532 5677899999999999999999965
Q ss_pred CCeEEccCCCCCCCcEEEEeecCCCCHHHHHH
Q 017726 330 YNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNF 361 (367)
Q Consensus 330 ~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~ 361 (367)
+|+.+.+|..+..+..||||.+|..+..|+..
T Consensus 304 ~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~ 335 (348)
T d1iuga_ 304 RGAVIAGGQGPLKGKVFRLSLMGAYDRYEALG 335 (348)
T ss_dssp TTEECEECCGGGTTTEEEECCCSSCCHHHHHH
T ss_pred CCeEEEcCccccCCCEEEEeCCCCCCHHHHHH
Confidence 59999999998889999999999888876554
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=100.00 E-value=2.2e-41 Score=308.63 Aligned_cols=356 Identities=24% Similarity=0.407 Sum_probs=300.9
Q ss_pred CCCCCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCC
Q 017726 5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPG 84 (367)
Q Consensus 5 ~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~g 84 (367)
|.=++.++|.|||..++++|+++|.+...+|++.++.+.++++|+.|++++|+++.+.+++++|||++++.++.+++.+|
T Consensus 13 ~~~~~~~l~~PGP~~~~~~V~~Am~~~~~~hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~~~~ 92 (388)
T d2ch1a1 13 LIIPEKIMMGPGPSNCSKRVLTAMTNTVLSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEG 92 (388)
T ss_dssp CCCCCCBCCSSSSCCCCHHHHHHTTSCCCCTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTT
T ss_pred cCCCcceeeeCCCCCCCHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhcccc
Confidence 33347899999999999999999999888899999999999999999999999877778888999999999999999999
Q ss_pred CeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHH
Q 017726 85 DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLD 164 (367)
Q Consensus 85 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~ 164 (367)
+++++...++++..+...++..+.....+...+....+.+..+....+ .+++++++++.+|.+|.+.|++++.++||
T Consensus 93 ~~vl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~t~tG~~~~~~~i~~~~~ 169 (388)
T d2ch1a1 93 DRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIEL---HQPKCLFLTHGDSSSGLLQPLEGVGQICH 169 (388)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHH---HCCSEEEEESEETTTTEECCCTTHHHHHH
T ss_pred ccccccccccccccchhhhhhhcccccccccccccccchhhhhhhhcc---CCcceeeeeecccccccccchhhhcchhc
Confidence 999999999999887778888899999998887777888887777665 46799999999999999999999999999
Q ss_pred hcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCc--eeechHHHHHHhh
Q 017726 165 EYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR--VFFDWKDYIKFYN 242 (367)
Q Consensus 165 ~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 242 (367)
+ +|+++++|++++++..++++.++++|+++++.||++.||+|+|+++.+++.+++......+. .+.++......+.
T Consensus 170 ~--~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (388)
T d2ch1a1 170 Q--HDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWG 247 (388)
T ss_dssp H--TTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTT
T ss_pred c--ccceeeeeeeecccccccchhccCceEEEEccccccCCCCeEEEEeccHHHHHhhhcccCccccccccchhhhhhhc
Confidence 9 99999999999999999999999999999999999999999999999999988776554332 2333333322221
Q ss_pred ---cCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCH
Q 017726 243 ---LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINS 319 (367)
Q Consensus 243 ---~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (367)
....++++++...+.++..+++.+...+.....++...........+...++.....++..+++.+++|++|++.+.
T Consensus 248 ~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~~p~g~~~ 327 (388)
T d2ch1a1 248 CYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVDW 327 (388)
T ss_dssp CSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCH
T ss_pred ccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhcccccccCCHHHhCCeEEEEECCCCCCH
Confidence 12235788999999999999999988888888888888888888888887766666667778888999999989999
Q ss_pred HHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCC-CCH--HHHHHhhhh
Q 017726 320 SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH-LNE--VMFNFQLLF 365 (367)
Q Consensus 320 ~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~-~~~--~~~~~~~l~ 365 (367)
.++.+.|.+++||.+.+|.++..++.||||.++. .+. .+.+.++|+
T Consensus 328 ~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alk 376 (388)
T d2ch1a1 328 WKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFK 376 (388)
T ss_dssp HHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHH
Confidence 9999999888899999999888888999996554 333 345555554
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=100.00 E-value=3.1e-40 Score=299.82 Aligned_cols=353 Identities=30% Similarity=0.447 Sum_probs=295.4
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeE
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRI 87 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~v 87 (367)
.+.++|.|||.++|++|+++|.....+|++..+.+..+++|+.+++++|+++++.|++++|||+++..++.+++.+|+++
T Consensus 17 p~~~l~~PGP~~v~~~Vl~am~~~~~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~~~~~~~ 96 (377)
T d1vjoa_ 17 PSRLLLGPGPSNAHPSVLQAMNVSPVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVV 96 (377)
T ss_dssp CCCEECSSSCCCCCHHHHHHHSSCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEE
T ss_pred CcceeecCCCCCCCHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhcccccccc
Confidence 46799999999999999999999888899999999999999999999999887789999999999999999999999999
Q ss_pred EEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcC
Q 017726 88 ISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYR 167 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~ 167 (367)
++...++++..+...+...+.....+..+.+...+.+..+....+ ++++++++++.+|.||.+.|++++.++||+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~tg~~~~i~~i~~~~~~-- 171 (377)
T d1vjoa_ 97 LIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALET---HRPAILALVHAETSTGARQPLEGVGELCRE-- 171 (377)
T ss_dssp EEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH---HCCSEEEEESEETTTTEECCCTTHHHHHHH--
T ss_pred ceeeechhhhhhhhhhhhhcccccccccCCCCcccchhhhhhhhc---Ccceeeeeeeeeccceeeechhhhhhhhhh--
Confidence 999998888776677777888888887776666666666665554 467999999999999999999999999999
Q ss_pred CCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceee--chHHHHHHhhcCC
Q 017726 168 HPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF--DWKDYIKFYNLGT 245 (367)
Q Consensus 168 ~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 245 (367)
+|+++++|++|+++..+++++.+++|+++++.||++.||+|+|+++.++..++.......+.... .............
T Consensus 172 ~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (377)
T d1vjoa_ 172 FGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSER 251 (377)
T ss_dssp HTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTC
T ss_pred ccceEEEecchhhhhhhhcccccccceeeecccccccCCCEEEEecchhhHHhhhhccCCCCcceeeccchhhhccCccc
Confidence 99999999999999999999999999999999999999999999999999988777655433322 2222222222233
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHH
Q 017726 246 FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRR 325 (367)
Q Consensus 246 ~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 325 (367)
+.+.++++..+.++..+.....+.|.+.+.++.+++.+++++.|.+.++....+ +..+++.++.|.+|++.+++++++.
T Consensus 252 ~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~rs~~v~~~~~p~~~~~~~l~~~ 330 (377)
T d1vjoa_ 252 VYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVE-KEYRLPTLTTVCIPDGVDGKAVARR 330 (377)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSC-GGGBCSSEEEEECCTTCCHHHHHHH
T ss_pred ccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhccCceeecC-hHhcCCeEEEEECCCCCCHHHHHHH
Confidence 346678888888888888888888999999999999999999999988776653 4457788889999888999999999
Q ss_pred HHhhCCeEEccCCCCCCCcEEEEeecCCC-C--HHHHHHhhhhc
Q 017726 326 AWQRYNLSLGLGLNKVAGKVFRIGHLGHL-N--EVMFNFQLLFQ 366 (367)
Q Consensus 326 L~~~~gv~v~~g~~~~~~~~iRi~~~~~~-~--~~~~~~~~l~~ 366 (367)
|.+++||.+..|.....++.||||.++.. + +.|....+|++
T Consensus 331 L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~ 374 (377)
T d1vjoa_ 331 LLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQ 374 (377)
T ss_dssp HHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred HHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHH
Confidence 98888999999998888889999975533 3 34555555543
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.5e-40 Score=300.99 Aligned_cols=351 Identities=25% Similarity=0.444 Sum_probs=284.2
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCC---CCceEEecCChhHHHHHHHHccC---
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTT---SGTPFLIPTTGTGAWESALTNTL--- 81 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~v~~~~ggt~al~~~~~~~~--- 81 (367)
+-.++|.|||.+++++|+++|..+...|+++.+.+...++++.++++++.. +.+.++||+|||+++++++.+++
T Consensus 2 ~~~~l~~PGP~~v~~~V~~Am~~~~~~hr~~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~ 81 (382)
T d2bkwa1 2 SVDTLLIPGPIILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSK 81 (382)
T ss_dssp CCCEECSSSSCCCCHHHHHTTSCCCCCTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTT
T ss_pred CcccccCCCCCCCCHHHHHHhCcccCCCCcHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhc
Confidence 356899999999999999999988888999999999999999999999863 44569999999999999998865
Q ss_pred CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCC-CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHH
Q 017726 82 SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVR 160 (367)
Q Consensus 82 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~ 160 (367)
++||+|++...++++.++...++..+..+..+... .+...+.+.+++++.+ ++++++++++.+|.||...|++.+.
T Consensus 82 ~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~tg~~~~~~~~~ 158 (382)
T d2bkwa1 82 APNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ---NSYGAVTVTHVDTSTAVLSDLKAIS 158 (382)
T ss_dssp CSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH---SCCSEEEEESEETTTTEECCHHHHH
T ss_pred CCCCceEEEEechhhhhhhhhccccccccccccccCCCCccchhHHHHHhhh---ccchheeeeeccccccccccchhhh
Confidence 68999999999999988777788888888877654 3456788888888876 4689999999999999999999999
Q ss_pred HHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCC----CceeechHH
Q 017726 161 KLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS----VRVFFDWKD 236 (367)
Q Consensus 161 ~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~----~~~~~~~~~ 236 (367)
+.|+++.+++++++|++++++..++++..+++|++++|+||++.||+|+|+++++++.++++.+... ..++.+...
T Consensus 159 ~~~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (382)
T d2bkwa1 159 QAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRR 238 (382)
T ss_dssp HHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHH
T ss_pred hhccccccceeeeeecccccccccccccccCeeEEeecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhhhhh
Confidence 9998866789999999999999999999999999999999999999999999999999887764321 222222222
Q ss_pred H---HHHhh-cCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccC-CCccCCCceEE
Q 017726 237 Y---IKFYN-LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQ-KEEWFSDTVTA 310 (367)
Q Consensus 237 ~---~~~~~-~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~~ 310 (367)
+ ..... ...++++|+++..++++..+++++.++|++.+.++.+++++++++.+.+. ++..... ....+++.++.
T Consensus 239 ~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~ 318 (382)
T d2bkwa1 239 WTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTA 318 (382)
T ss_dssp HHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEE
T ss_pred hhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEE
Confidence 2 22222 22345889999999999999999999999999999999999999999875 5555443 22335666778
Q ss_pred EEcCCCCCHHHHHHHHHhhCCeEEccCCCC-CCCcEEEEeecCCC---CHHHHHHhhhh
Q 017726 311 VIVPSHINSSEIVRRAWQRYNLSLGLGLNK-VAGKVFRIGHLGHL---NEVMFNFQLLF 365 (367)
Q Consensus 311 ~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~-~~~~~iRi~~~~~~---~~~~~~~~~l~ 365 (367)
|..+ ++.++.+.|. ++||.+..|.++ ..++.||||.+|.. ++.|....+|+
T Consensus 319 ~~~~---~~~~~~~~L~-~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~ 373 (382)
T d2bkwa1 319 VYVA---DPPDVIAFLK-SHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFD 373 (382)
T ss_dssp EECS---CHHHHHHHHH-HTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHH
T ss_pred EcCC---CHHHHHHHHH-HCCeEEECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHH
Confidence 8875 5678888885 569999999775 55688999976643 33444444443
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.9e-39 Score=291.71 Aligned_cols=341 Identities=21% Similarity=0.305 Sum_probs=271.4
Q ss_pred ccccCCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCce-EEecCChhHHHHHHHHccCCCCCeEEE
Q 017726 11 HLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTP-FLIPTTGTGAWESALTNTLSPGDRIIS 89 (367)
Q Consensus 11 ~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-v~~~~ggt~al~~~~~~~~~~gd~vl~ 89 (367)
+||+|||.+++++|+++|.+...++++..+.+..+++|+.+++++|+++++. +++++|||+++++++.++..+++.+++
T Consensus 2 ~l~~pGP~~~~~~V~~A~~~~~~~~~~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~~ 81 (361)
T d1m32a_ 2 LLLTPGPLTTSRTVKEAMLFDSCTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLI 81 (361)
T ss_dssp EECSSSSCCCCHHHHHTTCCCCCTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEE
T ss_pred ccccCCCCCCCHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhhhccccce
Confidence 5899999999999999999887778777777889999999999999987654 678889999999999999999999988
Q ss_pred EeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCC
Q 017726 90 FLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHP 169 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~ 169 (367)
....++...+....+..+.....+........+.+..+...... ++++++.+++.+|.||.+.|+++|.++|++ +|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~--~g 157 (361)
T d1m32a_ 82 VSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNAD--PTISHIAMVHSETTTGMLNPIDEVGALAHR--YG 157 (361)
T ss_dssp EESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHC--TTCCEEEEESEETTTTEECCHHHHHHHHHH--HT
T ss_pred eeehhhhhhHHHHhhhhhcccccccccccCCccchhhHHHHHhc--cCccceEEEeeecccccchhhhhhhhhhcc--cc
Confidence 88877776655666777887777776655544443333332222 578999999999999999999999999999 99
Q ss_pred cEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHH-HHhhcCCccC
Q 017726 170 ALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYI-KFYNLGTFWP 248 (367)
Q Consensus 170 ~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 248 (367)
+++++|++|++|..++++.++++|++++|+|||+.||+|+|+++++++..++..+.............. .... .....
T Consensus 158 ~~~~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 236 (361)
T d1m32a_ 158 KTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDN-HGKWR 236 (361)
T ss_dssp CEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHT-TTCCS
T ss_pred eeeEeecccccCcccccccccccceEEeeecccccCCCCceEEEechhhhhhhccccccccccchhhhcccccc-ccccC
Confidence 999999999999999999999999999999999999999999999999988877654432222211111 1111 22246
Q ss_pred CCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCC--CCHHHHHHH
Q 017726 249 YTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH--INSSEIVRR 325 (367)
Q Consensus 249 ~~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~ 325 (367)
++++...+.++..++.++.++| .+...++...+++.+.+.++..|+.+..+ +..+++.++.|..|++ .+..++.+.
T Consensus 237 ~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~-~~~rs~~v~~~~~p~~~~~~~~~~~~~ 315 (361)
T d1m32a_ 237 FTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLD-DELHSPIITAFYSPEDPQYRFSEFYRR 315 (361)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSC-GGGBCSSEEEEECCCCTTCCHHHHHHH
T ss_pred CCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcCCcccCC-hhhcCCcEEEEECCCCCCCCHHHHHHH
Confidence 6899999999999999888877 56677788888899999999988766553 4446777888888754 567899999
Q ss_pred HHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 326 AWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 326 L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
|.++ ||.+.+|.. ..++++|||++++++.+|+
T Consensus 316 l~~~-gi~i~~G~~-~~~~~~Ris~~g~~~~~di 347 (361)
T d1m32a_ 316 LKEQ-GFVIYPGKV-SQSDCFRIGNIGEVYAADI 347 (361)
T ss_dssp HHHT-TEECEECCC-SSSCEEEEECCSSCCHHHH
T ss_pred HHHC-CcEEECCCc-CCCCEEEEeCCCCCCHHHH
Confidence 9765 999887743 3456899998777776653
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-38 Score=291.57 Aligned_cols=336 Identities=18% Similarity=0.185 Sum_probs=275.7
Q ss_pred CcccccCCCCCChHHHHHHHccCC-----CCCCCC-c----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNN-----EDYRSP-A----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT 78 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~-----~~~~~~-~----~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~ 78 (367)
.+|++.++-+++|+.|++++.++. +.+++. . ..+..+++|+.+++++|+.+++++++++|+|++++.++.
T Consensus 23 ~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~ 102 (405)
T d1jf9a_ 23 LAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVAN 102 (405)
T ss_dssp CEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHH
T ss_pred eEEEeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHh
Confidence 379999999999999999988743 223322 1 245688999999999998776679999999999988776
Q ss_pred c----cCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 79 N----TLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 79 ~----~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
+ ...+||.|++.+.+|++.. |...++..|++++.+|.+.++.+|++.++++++ ++|++|++++.+|.+|.
T Consensus 103 ~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~~~~i~----~~t~lv~~~~v~~~tG~ 178 (405)
T d1jf9a_ 103 SWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFD----EKTRLLAITHVSNVLGT 178 (405)
T ss_dssp HHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCC----TTEEEEEEESBCTTTCC
T ss_pred cccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCCcCCHHHHHHhcc----CCcEEEEEecCCCcccc
Confidence 4 3689999999999999974 778888899999999999999999999999988 57899999999999999
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceee
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF 232 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~ 232 (367)
+.|+++|.++||+ +|+++++|++|+.+..++++...++|++++|+|||+ ||.|+|+++++++..+++.+........
T Consensus 179 ~~pi~~i~~~~~~--~g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~hK~~-Gp~G~g~l~v~~~~~~~~~~~~~~~~~~ 255 (405)
T d1jf9a_ 179 ENPLAEMITLAHQ--HGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLY-GPTGIGILYVKEALLQEMPPWEGGGSMI 255 (405)
T ss_dssp BCCHHHHHHHHHH--TTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTT-SCSSCEEEEECHHHHTTCCCSSCSSSSE
T ss_pred cCchHHhhhHHHH--cCCeeecccceeccccccchhhcCCceeeccccccc-cCCCceeeeechhhhcccCccccccccc
Confidence 9999999999999 999999999999999999999999999999999996 7999999999999988776654322111
Q ss_pred ---------chHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcC-CccccCCCc
Q 017726 233 ---------DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG-LKNCTQKEE 302 (367)
Q Consensus 233 ---------~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~ 302 (367)
.+.+...+++.| |+++..++++..+++++.+.|++.+.++...+.+++.+.++..+ .....+.
T Consensus 256 ~~~~~~~~~~~~~~~~r~e~G-----T~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~-- 328 (405)
T d1jf9a_ 256 ATVSLSEGTTWTKAPWRFEAG-----TPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ-- 328 (405)
T ss_dssp EECCTTTCCEECCTTGGGCCS-----SCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCT--
T ss_pred CccccccccccccchhhhcCC-----CCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhcCCcccccCCc--
Confidence 122233555655 59999999999999999999999999999999999999998874 4444432
Q ss_pred cCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC--------CCCcEEEEeecCCCCHHHHHH
Q 017726 303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK--------VAGKVFRIGHLGHLNEVMFNF 361 (367)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~--------~~~~~iRi~~~~~~~~~~~~~ 361 (367)
.+. .++.|.+ ++.++.++.+.|. ++||.++.|..+ ..++.+|||++.+++.+|++.
T Consensus 329 ~r~-~ivsf~~-~~~~~~~~~~~L~-~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~ 392 (405)
T d1jf9a_ 329 NRL-GVIAFNL-GKHHAYDVGSFLD-NYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDR 392 (405)
T ss_dssp TCC-SEEEEEE-TTCCHHHHHHHHH-HTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHH
T ss_pred CcC-cEEEEEc-CCCCHHHHHHHHH-HCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 234 4778888 4778888988884 669999877542 124679999988887665543
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=100.00 E-value=1.3e-37 Score=284.67 Aligned_cols=337 Identities=18% Similarity=0.182 Sum_probs=276.8
Q ss_pred cccccCCCCCChHHHHHHHccCCC-----CCCC-Cc----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHc
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNNE-----DYRS-PA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN 79 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~~-----~~~~-~~----~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~ 79 (367)
+|++.++-+++|+.|++++.+... .+++ +. ..+..+++|+.+++++|++.++.+++++|+++++++++.+
T Consensus 24 iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~~~~ 103 (408)
T d1t3ia_ 24 VYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYS 103 (408)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHH
T ss_pred EEeeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHHHHHHhh
Confidence 699999999999999999877432 1222 22 2467889999999999998777799999999999887754
Q ss_pred ----cCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccc
Q 017726 80 ----TLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT 153 (367)
Q Consensus 80 ----~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~ 153 (367)
.+.+|++|++++.+|++.. |...++..|.+++.++.+.++..+.+.++++++ ++|++|++++.+|.+|.+
T Consensus 104 ~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~~----~~t~lv~i~~~~~~tG~~ 179 (408)
T d1t3ia_ 104 WGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLS----EKTKLVTVVHISNTLGCV 179 (408)
T ss_dssp THHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCC----TTEEEEEEESBCTTTCBB
T ss_pred ccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccccccccHHHhhhccC----CCceEEEEeccccccccc
Confidence 3678999999999999874 666788899999999998888889999999987 578999999999999999
Q ss_pred ccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceee-
Q 017726 154 NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF- 232 (367)
Q Consensus 154 ~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~- 232 (367)
.|+++|.++|++ +|+++++|++|++|..++|+..+++|++++|+|||+ ||+|+|+++++++......+....+...
T Consensus 180 ~p~~~i~~~~~~--~g~~~ivDa~q~~g~~~id~~~~~~D~~~~s~hK~~-gp~G~g~l~v~~~~~~~~~p~~~g~~~~~ 256 (408)
T d1t3ia_ 180 NPAEEIAQLAHQ--AGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMC-APTGIGFLYGKEEILEAMPPFFGGGEMIA 256 (408)
T ss_dssp CCHHHHHHHHHH--TTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTT-SCTTCEEEEECHHHHHHSCCCSCSTTSEE
T ss_pred CcHHHHhhhhhc--cCceeeeccceecccccccccccCCceEEecccccc-CCCCccccccchhhhhcCCceecCCcccc
Confidence 999999999999 999999999999999999999999999999999996 7999999999999987776554332111
Q ss_pred -------chHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc-c
Q 017726 233 -------DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE-W 303 (367)
Q Consensus 233 -------~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-~ 303 (367)
.+.....+++.| |+++..++++..+++++.+.|++++.++...+.+++.+.+++. ++.++.+.+. .
T Consensus 257 ~~~~~~~~~~~~~~r~e~G-----t~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 331 (408)
T d1t3ia_ 257 EVFFDHFTTGELPHKFEAG-----TPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHG 331 (408)
T ss_dssp EECSSCEEECCTTGGGCCS-----SCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGS
T ss_pred cccccccccCCchhhhcCC-----cHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhccCccccccCCCcccc
Confidence 122333566655 5999999999999999999999999999999999999999998 6777664322 2
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC--------CCCcEEEEeecCCCCHHHHH
Q 017726 304 FSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK--------VAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~--------~~~~~iRi~~~~~~~~~~~~ 360 (367)
....++.|.+ ++.+..++.+.|. ++||.++.|..+ ..++.+|||++.+++.+|++
T Consensus 332 ~~~~iv~f~~-~~~~~~~v~~~L~-~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did 394 (408)
T d1t3ia_ 332 DRAALASFNV-AGLHASDVATMVD-QDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEID 394 (408)
T ss_dssp CBCSEEEEEE-TTBCHHHHHHHHH-TTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHH
T ss_pred CcceEEEEEe-CCCCHHHHHHHHh-hCCcEEecCcccccHHHHhhcCCccEEEECCCCCCHHHHH
Confidence 3345788888 5788999999885 569999887542 12457999998888776554
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=5.4e-38 Score=285.34 Aligned_cols=344 Identities=16% Similarity=0.122 Sum_probs=266.7
Q ss_pred CCcccccCCCCCChHHHHHHHccCCC-----CCCCC----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNE-----DYRSP----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT 78 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~-----~~~~~----~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~ 78 (367)
.++|++.++..++|..|++++.+... ....+ ......+++|+.+++++|+++++ |++|+|+|++++.++.
T Consensus 7 ~~~yld~~~~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~-i~~~~g~t~a~~~~~~ 85 (381)
T d1elua_ 7 NKTYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNT-ITITDNVTTGCDIVLW 85 (381)
T ss_dssp TSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGG-EEEESSHHHHHHHHHH
T ss_pred CCEEeeCCcccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCccc-EEEECChHHHhhhcch
Confidence 47899999999999999999887532 12221 23455778999999999997754 9999999999999998
Q ss_pred cc-CCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCC--HHHHHHHHhccCCCCccEEEEEecCCCcccc
Q 017726 79 NT-LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAK--LDVLASKLAADTAHTIKAICIVHNETATGVT 153 (367)
Q Consensus 79 ~~-~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d--~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~ 153 (367)
++ ..+||.|++++.+|.+.. +...++..|++++.++.+.....+ .+.++++++ ++++++++++++|+||.+
T Consensus 86 ~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~----~~t~~v~i~~~~n~tG~~ 161 (381)
T d1elua_ 86 GLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG----PKTRLVILSHLLWNTGQV 161 (381)
T ss_dssp HSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC----TTEEEEEEESBCTTTCCB
T ss_pred hhhhcCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhc----cccccccccccccccccc
Confidence 86 689999999999998864 556778889999999876543322 344555444 678999999999999999
Q ss_pred ccHHHHHHHHHhcC--CCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCcee
Q 017726 154 NNLSKVRKLLDEYR--HPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF 231 (367)
Q Consensus 154 ~~~~~i~~~~~~~~--~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~ 231 (367)
.|+++|.++|+++. +++++++|++|+.+..++++...++|++++|+|||+++|.|+|+++++++..+++.+.......
T Consensus 162 ~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~~~~~~~p~~~~~~~ 241 (381)
T d1elua_ 162 LPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRS 241 (381)
T ss_dssp CCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTTT
T ss_pred chhhHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccchhhHHHhhHHHHHhcCcccccccc
Confidence 99999999999832 4799999999999999999999999999999999999999999999999998877654332211
Q ss_pred e---------chHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHc-CCccccCC
Q 017726 232 F---------DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGL-ENVIERHRRLGKATRLAVEAW-GLKNCTQK 300 (367)
Q Consensus 232 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~-~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 300 (367)
. .+.....+++ .++++...++++.++++.+.+.|. +.+.++..++++++.+.|+++ |+.++.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~-----~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 316 (381)
T d1elua_ 242 ITYGAKGEPTGWAEGGKRFE-----VATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATS 316 (381)
T ss_dssp EEECTTSCEEEECSGGGGGC-----CSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSS
T ss_pred cccccccccccccccccccc-----cccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhcCCCeEecCCC
Confidence 1 1122223333 346888899999999999999884 556788899999999999998 88887753
Q ss_pred CccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHH--HHHHhhhhcC
Q 017726 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEV--MFNFQLLFQL 367 (367)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~--~~~~~~l~~~ 367 (367)
.. ++ .+++|.++...+.+++.+.|.+ .||.++... .++++|||++.+++.+ |.+.++|+++
T Consensus 317 ~~-~~-~~vsf~~~~~~~~~~i~~~L~~-~gi~v~~~~---~~~~lRis~~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 317 AP-QA-GLVSFTVDSPLGHRAIVQKLEE-QRIYLRTIA---DPDCIRACCHYITDEEEINHLLARLADF 379 (381)
T ss_dssp CC-SS-SEEEEEECSSSCHHHHHHHHHH-TTEECEEET---TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred Cc-cc-cEEEEEcCCCCCHHHHHHHHHh-CCcEEEecC---CCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 32 44 4778888555667888888865 599886422 2468999987766544 5556666553
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.6e-35 Score=268.37 Aligned_cols=332 Identities=14% Similarity=0.137 Sum_probs=252.9
Q ss_pred cccccCCCCCChHHHHHHHccCCCC-------CC-CCc----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 017726 10 NHLFVPGPVHIPDQVIRAMNRNNED-------YR-SPA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL 77 (367)
Q Consensus 10 ~~~~~~~p~~~~~~v~~a~~~~~~~-------~~-~~~----~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~ 77 (367)
+|+++++-++++++|++++.++... ++ .+. ..+..+++|+.+++++|+++++ |++++|+|++++.++
T Consensus 4 iYlD~aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~-I~~~~~~t~~l~~~~ 82 (391)
T d1p3wa_ 4 IYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPRE-IVFTSGATESDNLAI 82 (391)
T ss_dssp EECBTTTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGG-EEEESSHHHHHHHHH
T ss_pred EEeeCccccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCc-EEEECCHHHHHHHHH
Confidence 6899999999999999999986532 11 111 2456778999999999998765 999999999998887
Q ss_pred Hcc----CCCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 78 TNT----LSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 78 ~~~----~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
.++ +.+||+|++.+++|.+.. +...++..|++++.++.+.++.+|+++++++++ ++|++|++++++|+||.
T Consensus 83 ~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~~~~~i~----~~T~lv~is~~~n~tG~ 158 (391)
T d1p3wa_ 83 KGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMR----DDTILVSIMHVNNEIGV 158 (391)
T ss_dssp HHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCC----TTEEEEECCSBCTTTCC
T ss_pred hhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCCCCeEcHHHHHHhCC----CCcEEEEEECCCCCCee
Confidence 653 579999999999888875 335567789999999999888999999999998 57899999999999999
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceee
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF 232 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~ 232 (367)
+.|+++|.++||+ +|+++++|++|+.+..++|+...++|++++|++||+ |+.|+|+++++++......+........
T Consensus 159 ~~~~~~I~~~~~~--~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~-g~~g~g~~~~~~~~~~~~~~~~~gg~~~ 235 (391)
T d1p3wa_ 159 VQDIAAIGEMCRA--RGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIY-GPKGIGALYVRRKPRVRIEAQMHGGGHE 235 (391)
T ss_dssp BCCHHHHHHHHHH--HTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTT-SCSSCEEEEECBTTBCCCCCSSCSSCTT
T ss_pred ECCHHHHHHHhcc--CCcEEEEeeccccCCccccchhcccccccccccccc-CCCceEEEEEecchhcccCCcccCCccc
Confidence 9999999999999 999999999999999999999999999999999997 7899999999998765555433221111
Q ss_pred chHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEE
Q 017726 233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVI 312 (367)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~ 312 (367)
..+..++.+.....++..++....+. .....++..++.+++.+.|.+.+...+..........++.+.
T Consensus 236 -----------~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~ 303 (391)
T d1p3wa_ 236 -----------RGMRSGTLPVHQIVGMGEAYRIAKEE-MATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVS 303 (391)
T ss_dssp -----------TTTSCSCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEE
T ss_pred -----------cCcccCcchhhhhhhhhhhhhHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCeeecccccccCceEEEEE
Confidence 11234457777777777777766554 345567778888888888888743333333333455667777
Q ss_pred cCCCCCHHHHHHHHHhhCCeEEccCCCCC-------------------CCcEEEEeecCCCCHHHH--HHhhhh
Q 017726 313 VPSHINSSEIVRRAWQRYNLSLGLGLNKV-------------------AGKVFRIGHLGHLNEVMF--NFQLLF 365 (367)
Q Consensus 313 ~~~~~~~~~l~~~L~~~~gv~v~~g~~~~-------------------~~~~iRi~~~~~~~~~~~--~~~~l~ 365 (367)
. .+.+.+++...|. ++.++.|..+. .++.+|||++.+++.+|+ +.++|+
T Consensus 304 ~-~~~~~~~~~~~l~---~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~ 373 (391)
T d1p3wa_ 304 F-NYVEGESLIMALK---DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVR 373 (391)
T ss_dssp E-TTSCHHHHHHHTT---TEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred e-CCCChHHHHHHhC---CCEEEccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHH
Confidence 7 4667788877663 66666553311 124699998887765544 344443
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.8e-33 Score=251.98 Aligned_cols=336 Identities=16% Similarity=0.146 Sum_probs=247.2
Q ss_pred CCcccccCCCCCChHHHHHHHccCCCC-----CCCCc----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNED-----YRSPA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT 78 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~~----~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~ 78 (367)
+|+|++.+|-+++|+.|++++.+.... ++.+. ..+..+++|+.+++++|+++++ |++++|+|+++..++.
T Consensus 1 ~~iyld~a~~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~-i~~~~~~T~~l~~~~~ 79 (376)
T d1eg5a_ 1 MRVYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSE-IFFTSCATESINWILK 79 (376)
T ss_dssp CCEECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGG-EEEESCHHHHHHHHHH
T ss_pred CEEEEECcccccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCc-EEEECCHHHHHHhhhh
Confidence 489999999999999999998775432 22222 3455778899999999998755 9999999999998775
Q ss_pred c----cCCCCCeEEEEeCCcchHH-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccc
Q 017726 79 N----TLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT 153 (367)
Q Consensus 79 ~----~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~ 153 (367)
+ ...+|+.|++....+.+.. +...++..|++++.+|+++++.+|+++++++++ ++|++|++++++|+||.+
T Consensus 80 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~id~~~l~~~i~----~~t~lv~is~v~~~tG~~ 155 (376)
T d1eg5a_ 80 TVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVD----EDTFLVSIMAANNEVGTI 155 (376)
T ss_dssp HHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCC----TTEEEEEEESBCTTTCBB
T ss_pred cccccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCCCCeECHHHHHHhcC----CCceEEEEECCcccccee
Confidence 3 4567777777766555543 456677889999999999999999999999998 578999999999999999
Q ss_pred ccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeec
Q 017726 154 NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFD 233 (367)
Q Consensus 154 ~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 233 (367)
.|++++.++++....++++++|++|+++..++++.+.++|++++|+|||+ ||+|+|+++.+++. .+.+...+....
T Consensus 156 ~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K~~-gp~G~~~l~~~~~~--~~~p~~~g~~~~- 231 (376)
T d1eg5a_ 156 QPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFH-GPKGVGITYIRKGV--PIRPLIHGGGQE- 231 (376)
T ss_dssp CCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGT-SCTTCEEEEECTTS--CCCCSBCSSCTT-
T ss_pred eeehhhhhhhhhcccCceeEEEeeeccccccccccccCccceecccceee-cCCCceeEEeccCc--ccCCcccCCCCc-
Confidence 99999999997755799999999999999999999999999999999996 79999999998764 233222111100
Q ss_pred hHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEc
Q 017726 234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIV 313 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 313 (367)
. .+..++.+.........+....... .............++.+.|...+......... .....+.+.+
T Consensus 232 -----~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~ 299 (376)
T d1eg5a_ 232 -----R-----GLRSGTQNVPGIVGAARAMEIAVEE-LSEAAKHMEKLRSKLVSGLMNLGAHIITPLEI-SLPNTLSVSF 299 (376)
T ss_dssp -----T-----TTBCSCCCHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHTTTCEECSCTTS-BCTTEEEEEC
T ss_pred -----c-----cccCCcccchhhhhHHHHhhccccc-hhhhhhhhhhhhhhhccccccccccccccccc-cccceeeecc
Confidence 1 1223456666555555555544333 45566667777888888888775444443332 3344667777
Q ss_pred CCCCCHHHHHHHHHhhCCeEEccCCCCC-------------------CCcEEEEeecCCCCHHH--HHHhhhhc
Q 017726 314 PSHINSSEIVRRAWQRYNLSLGLGLNKV-------------------AGKVFRIGHLGHLNEVM--FNFQLLFQ 366 (367)
Q Consensus 314 ~~~~~~~~l~~~L~~~~gv~v~~g~~~~-------------------~~~~iRi~~~~~~~~~~--~~~~~l~~ 366 (367)
.+.+..++...|. ++||.++.|.... .++.+|||++.+++.+| .+..+|++
T Consensus 300 -~~~~~~~~~~~L~-~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~ 371 (376)
T d1eg5a_ 300 -PNIRGSTLQNLLS-GYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEE 371 (376)
T ss_dssp -TTCCHHHHHHHHH-HTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHh-hCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678889988874 5699998774311 12469999887776554 44555544
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=1.6e-33 Score=255.76 Aligned_cols=311 Identities=14% Similarity=0.110 Sum_probs=223.6
Q ss_pred CcccccCC--CCCChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHcc
Q 017726 9 KNHLFVPG--PVHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNT 80 (367)
Q Consensus 9 ~~~~~~~~--p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~ 80 (367)
+.+.++-| +.++|+.+.+++.+.... ...|....+..++|+.+++++ |.. .+++|++|+|+++++..++.++
T Consensus 31 ~vi~l~~G~p~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~ 110 (388)
T d1j32a_ 31 DVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAM 110 (388)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH
T ss_pred CeEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHH
Confidence 34555544 345678888888764332 223333344556777776665 443 3456999999999999999999
Q ss_pred CCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---
Q 017726 81 LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN--- 155 (367)
Q Consensus 81 ~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~--- 155 (367)
++|||.|+++.|.|+.+. ..++..|.+++.++... ++.+|+++++++++ ++++++++++||||||.+++
T Consensus 111 ~~~gd~Vlv~~P~y~~~~--~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~----~~~~~~~~~~P~NPTG~~~~~~~ 184 (388)
T d1j32a_ 111 IEPGDEVIIPAPFWVSYP--EMVKLAEGTPVILPTTVETQFKVSPEQIRQAIT----PKTKLLVFNTPSNPTGMVYTPDE 184 (388)
T ss_dssp CCTTCEEEEESSCCTHHH--HHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHH
T ss_pred hCCCCEEEEcCCCcHHHH--HHHHHhcCeEEEEecccccccCCCHHHHHHhCC----CCCeEEEECCCCCCCCcccchhh
Confidence 999999999999887753 45677888888888764 35789999999987 57799999999999999997
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeeccCceee----ccc-----cccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhcc
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSSICAIDF----RMD-----EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKT 224 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~----~~~-----~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~ 224 (367)
+++|.++|++ +|++||+|++|+...... ... ..+..+++.|+||.++ .+| +|++++++++++.+..
T Consensus 185 ~~~l~~~~~~--~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~-~~GlRvG~~~~~~~~~~~~~~ 261 (388)
T d1j32a_ 185 VRAIAQVAVE--AGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYA-MTGWRVGFLAGPVPLVKAATK 261 (388)
T ss_dssp HHHHHHHHHH--HTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTT-CTTTCCEEEECCHHHHHHHHH
T ss_pred hhhhhccccc--CCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhh-cchhHeEEEEECHHHHHHHHH
Confidence 5667778888 999999999986543321 111 1135689999999985 444 7999999999877653
Q ss_pred CCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCcc
Q 017726 225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEW 303 (367)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~ 303 (367)
... .. ...++.....+...++....+ .+++.++.++++++.+.+.|++. |+.+..|
T Consensus 262 ~~~----------------~~--~~~~~~~~q~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p---- 318 (388)
T d1j32a_ 262 IQG----------------HS--TSNVCTFAQYGAIAAYENSQD-CVQEMLAAFAERRRYMLDALNAMPGLECPKP---- 318 (388)
T ss_dssp HHH----------------TT--TCSCCHHHHHHHHHHHHSCSH-HHHHHHHHHHHHHHHHHHHHHTCTTCBCCCC----
T ss_pred hhh----------------hc--cccccHHHHHHHhhcccchHH-HHHHHHHHHHHHHHHHHHHHHhCCCCEecCC----
Confidence 210 00 112444332333222222111 27788889999999999999997 8888776
Q ss_pred CCCceEEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeec
Q 017726 304 FSDTVTAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHL 351 (367)
Q Consensus 304 ~~~~~~~~~~~~-~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~ 351 (367)
.+++++|++++. ..+..+++++|.+++||.+.||..+..++++|+++.
T Consensus 319 ~gg~~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~ 367 (388)
T d1j32a_ 319 DGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA 367 (388)
T ss_dssp CBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC
T ss_pred CceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEe
Confidence 466677777754 467789999998888999999977666789999975
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=5.4e-33 Score=252.69 Aligned_cols=313 Identities=14% Similarity=0.102 Sum_probs=224.5
Q ss_pred cccccCC--CCCChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhc------CCCCceEEecCChhHHHHHHHHcc
Q 017726 10 NHLFVPG--PVHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFK------TTSGTPFLIPTTGTGAWESALTNT 80 (367)
Q Consensus 10 ~~~~~~~--p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~------~~~~~~v~~~~ggt~al~~~~~~~ 80 (367)
.+.++-| +.++|+.+.+++.+.... ..+|....+..++|+.++++++ ..++++|++|+|+++++..++.++
T Consensus 27 vi~l~~g~p~~~~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l 106 (388)
T d1gdea_ 27 VISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAF 106 (388)
T ss_dssp CEECCCCSCCSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTT
T ss_pred eEECCCCCCCCCCCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHHHHh
Confidence 3444444 246678888888765432 2234444556788888888764 234456999999999999999999
Q ss_pred CCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---
Q 017726 81 LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN--- 155 (367)
Q Consensus 81 ~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~--- 155 (367)
++|||.|+++.|.|..+. ..++..|.+++.++... ++.+|++++++.++ ++++++++++||||||.+++
T Consensus 107 ~~~gd~vlv~~P~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~i~~~~P~NPtG~~~s~~~ 180 (388)
T d1gdea_ 107 LKDGEEVLIPTPAFVSYA--PAVILAGGKPVEVPTYEEDEFRLNVDELKKYVT----DKTRALIINSPCNPTGAVLTKKD 180 (388)
T ss_dssp CCTTCEEEEEESCCTTHH--HHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHH
T ss_pred cCCCCEEEECCCCcHHHH--HHHHHcCCEEEEeecccccCCCCCHHHHHHhCc----cCCeEEEECCCcCCCCCcCCHHH
Confidence 999999999999887753 55788999999999864 45789999999987 46799999999999999996
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeeccCcee----e---ccc-cccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCC
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSSICAID----F---RMD-EWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAK 226 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~~~~~~----~---~~~-~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~ 226 (367)
+++|.++|++ ++++||+|++|+..... . ... ..+..+++.|+||.++ ....+|++++++++++.+....
T Consensus 181 ~~~l~~~a~~--~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii~~~~~~~~~~~~~ 258 (388)
T d1gdea_ 181 LEEIADFVVE--HDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQ 258 (388)
T ss_dssp HHHHHHHHHH--TTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEEEEEeeccchhhhhhcc
Confidence 6668888889 99999999998754321 0 111 1245799999999984 1233799999999887766421
Q ss_pred CCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCC
Q 017726 227 SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFE-EGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFS 305 (367)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~-~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 305 (367)
. .. ...++.....+...++..... ..++..++.+.+....+.+.|.+.++.+..| .+
T Consensus 259 ~---------------~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p----~g 316 (388)
T d1gdea_ 259 M---------------YN---ATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKP----KG 316 (388)
T ss_dssp H---------------TT---TCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC----CB
T ss_pred c---------------cc---cccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhccccccCC----Cc
Confidence 1 01 122333333333334432111 1155667778888889999998888777666 45
Q ss_pred CceEEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecC
Q 017726 306 DTVTAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLG 352 (367)
Q Consensus 306 ~~~~~~~~~~-~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~ 352 (367)
++++|+++++ +.+..++++.|.+++||.+.||..+ ...+++||++..
T Consensus 317 g~fl~~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~~ 366 (388)
T d1gdea_ 317 AFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT 366 (388)
T ss_dssp TTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEecC
Confidence 6677888754 5688899999888889999998543 345789999753
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1e-32 Score=250.19 Aligned_cols=310 Identities=18% Similarity=0.143 Sum_probs=221.5
Q ss_pred ccccCCCC--CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCC
Q 017726 11 HLFVPGPV--HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLS 82 (367)
Q Consensus 11 ~~~~~~p~--~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~ 82 (367)
+.++.|-+ ++|+.+.+++.+.... ..+|....+..++|+.+++++ +.+ +++++++|+|+++++..++.++++
T Consensus 34 i~l~~g~p~~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~ 113 (382)
T d1b5pa_ 34 VALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILD 113 (382)
T ss_dssp EECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCC
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHhCC
Confidence 44444333 5678888888775432 233443445567777777776 333 345699999999999999999999
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HH
Q 017726 83 PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LS 157 (367)
Q Consensus 83 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~ 157 (367)
+||.|++++|.|+.+. ..++..|.+++.++..+ ++.+|+++++++++ ++++++++++||||||.+++ ++
T Consensus 114 ~gd~vl~~~P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~----~~~~~i~~~~P~NPTG~~~s~~~~~ 187 (382)
T d1b5pa_ 114 PGDEVIVLSPYWVSYP--EMVRFAGGVVVEVETLPEEGFVPDPERVRRAIT----PRTKALVVNSPNNPTGAVYPKEVLE 187 (382)
T ss_dssp TTCEEEEEESCCTHHH--HHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCC----TTEEEEEEESSCTTTCCCCCHHHHH
T ss_pred CCCEEEECCCCcHHHH--HHHHHhcCeEEEEecccccccCCCHHHHHHhCC----CCCeEEEECCCCCCcchhCCHHHHH
Confidence 9999999999877653 56788999999998764 35779999998887 57799999999999999997 66
Q ss_pred HHHHHHHhcCCCcEEEEeeeeccCceee---c--cccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCce
Q 017726 158 KVRKLLDEYRHPALFLVDGVSSICAIDF---R--MDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRV 230 (367)
Q Consensus 158 ~i~~~~~~~~~~~~vi~D~~~~~~~~~~---~--~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~ 230 (367)
+|.++|++ +|++||+|++|.....+- . .......+++.|++|.++ .+| +|+++.++++++.+.....
T Consensus 188 ~l~~~~~~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~GlR~G~~~~~~~~i~~~~~~~~--- 261 (382)
T d1b5pa_ 188 ALARLAVE--HDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFA-MTGWRIGYACGPKEVIKAMASVSR--- 261 (382)
T ss_dssp HHHHHHHH--TTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTT-CGGGCCEEEECCHHHHHHHHHHHH---
T ss_pred HHHHHHHH--cCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhcc-CcHhheEEEEECHHHHHHHHHHHH---
Confidence 78888899 999999999987543211 1 111235688999999985 444 7999999998877653210
Q ss_pred eechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHH--HHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCce
Q 017726 231 FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLI--FEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV 308 (367)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~--~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 308 (367)
.. ...++.....++..++... .+.-++..++.++.+++.+.+.+.+.|+.+..| .++++
T Consensus 262 ------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p----~gg~~ 322 (382)
T d1b5pa_ 262 ------------QS---TTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRP----SGAFY 322 (382)
T ss_dssp ------------TT---TCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC----SBTTE
T ss_pred ------------hc---ccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhcCCeEecC----CceEE
Confidence 01 1123332222222233211 111155667778888899999998889888776 46677
Q ss_pred EEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC
Q 017726 309 TAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352 (367)
Q Consensus 309 ~~~~~~~-~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~ 352 (367)
+|++++. ..+..++.+.|.+ +||.+.||..+...+++||++..
T Consensus 323 ~~~~~~~~~~~~~~~~~~l~e-~gV~v~PG~~F~~~~~iRis~~~ 366 (382)
T d1b5pa_ 323 VLMDTSPIAPDEVRAAERLLE-AGVAVVPGTDFAAFGHVRLSYAT 366 (382)
T ss_dssp EEEECTTTCSSHHHHHHHHHH-TTEECEESGGGTCTTEEEEECCS
T ss_pred EeEeCCCCCCCHHHHHHHHHH-CCEEEEeCcccCCCCeEEEEEcC
Confidence 8888843 4567788888865 59999999776667899999743
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=100.00 E-value=1.4e-32 Score=247.64 Aligned_cols=336 Identities=17% Similarity=0.167 Sum_probs=242.6
Q ss_pred CCcccccCCCCCChHHHHHHHccCCC------------CCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChh-HHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNE------------DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGT-GAWE 74 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~------------~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt-~al~ 74 (367)
.|.|+|.|||..+|++|+++|.+... +||++.+.+.++++|+.|++++++++++.+++++|++ .++.
T Consensus 2 ~~~~~F~pGP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~e 81 (361)
T d2c0ra1 2 ERAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFA 81 (361)
T ss_dssp CCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHH
T ss_pred CCCcccCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHH
Confidence 47899999999999999999988652 3778889999999999999999998776788877765 5556
Q ss_pred HHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc
Q 017726 75 SALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN 154 (367)
Q Consensus 75 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~ 154 (367)
+++..+..+++++++...+.++.+|..+++..|.++..+..+....++++.+++.+..+ +. ++.+|.||...
T Consensus 82 a~~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~v~~~tg~~~ 153 (361)
T d2c0ra1 82 MIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASSEASNYMTLPKLQEIQLQD-----NA---AYLHLTSNETI 153 (361)
T ss_dssp HHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGTTCSCCCGGGCCCCT-----TE---EEEEEESEETT
T ss_pred HHHhccccCCCceEEEeechhhhhhhhhhhhcCceeeeeccccccccchhhhhhhcccC-----cc---eEEEEecccce
Confidence 66667888999999999988888888999999999999998877778888887765532 22 34456799999
Q ss_pred cHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeech
Q 017726 155 NLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDW 234 (367)
Q Consensus 155 ~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 234 (367)
|+.++.++|++ +|+++++|++++++..++++.+++ +.+.+++|.++.++|.++++.++... ..... .....++
T Consensus 154 ~~~~i~~~~~~--~~al~~vDavss~g~~~id~~~~d--i~~~s~~k~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~ 226 (361)
T d2c0ra1 154 EGAQFKAFPDT--GSVPLIGDMSSDILSRPFDLNQFG--LVYAGAQKNLGPSGVTVVIVREDLVA-ESPKH--LPTMLRY 226 (361)
T ss_dssp TTEECSSCCCC--TTSCEEEECTTTTTSSCCCGGGCS--EEEEETTTTTCCSSCEEEEEEGGGSS-SCCTT--SCGGGCH
T ss_pred ecceEEEeecc--CCceEEEEeeccccccccccccce--eEEEecccccccccCcEEEEEhHHhh-hCccc--ccccccc
Confidence 99999999999 999999999999999999998764 55566788886555555555544432 22211 1122233
Q ss_pred HHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEE
Q 017726 235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVI 312 (367)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 312 (367)
..+.... .+ ..+++......+..+.......+ .....++.+..+..+....... ........++.++..+++|.
T Consensus 227 ~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~ 302 (361)
T d2c0ra1 227 DTYVKNN--SL--YNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFR 302 (361)
T ss_dssp HHHHHTT--TC--SSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEE
T ss_pred ccccccc--cc--cccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEEEEE
Confidence 3322221 11 22344444444444555544444 5566777777777777777665 33333334555778889999
Q ss_pred cCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH--Hhhhh
Q 017726 313 VPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN--FQLLF 365 (367)
Q Consensus 313 ~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~--~~~l~ 365 (367)
++++.+++++.+.|. ++||.++.|.....+ ||||.+++++.+|+. .++|+
T Consensus 303 ~~~~~~~~~~~~~L~-~~GI~~~~G~~~~g~--~RIs~~~~~~~edv~~Lv~~l~ 354 (361)
T d2c0ra1 303 LASEELEKEFVKASE-QEGFVGLKGHRSVGG--LRASIYNAVPYESCEALVQFME 354 (361)
T ss_dssp CSCHHHHHHHHHHHH-HTTEESCBCCTTTCS--EEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHH-HCCCEEecCCCcCCe--EEEEecCCCCHHHHHHHHHHHH
Confidence 987777889999886 559999998765533 999999987765544 44443
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.98 E-value=4.8e-31 Score=238.01 Aligned_cols=310 Identities=18% Similarity=0.162 Sum_probs=223.8
Q ss_pred CChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH
Q 017726 19 HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL 98 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~ 98 (367)
++|+.+++++.+.......|.......++|+.|++++++++++ |++|+|+++++..++.+++.+||.|++++|.|....
T Consensus 38 ~~p~~i~~al~~~l~~~~~Y~~~~G~~elr~aiA~~~~~~~~~-Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~ 116 (368)
T d1v2da_ 38 PPPPFLLEAVRRALGRQDQYAPPAGLPALREALAEEFAVEPES-VVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYL 116 (368)
T ss_dssp CCCHHHHHHHHHHTTTSCSCCCTTCCHHHHHHHHHHHTSCGGG-EEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHH
T ss_pred CCCHHHHHHHHHHhhcccCCCCCcCCHHHHHHHHhhcccCCcc-eeeccchHHHHHHHhhccccccccccccCCcchhhh
Confidence 5678899999886554434544455679999999999998754 999999999999999999999999999999877654
Q ss_pred HHHHHHHhCCceEEEeCC---CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCCCcEE
Q 017726 99 WIDQQQRLNFNVDVVESD---WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALF 172 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~---~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~v 172 (367)
..++..|.+++.++.+ ..+.+|++.+++++. ++++++++++||||||.+++ +++|.++|++ +|+++
T Consensus 117 --~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~--~~i~i 188 (368)
T d1v2da_ 117 --PDAFLAGAKARLVRLDLTPEGFRLDLSALEKALT----PRTRALLLNTPMNPTGLVFGERELEAIARLARA--HDLFL 188 (368)
T ss_dssp --HHHHHTTCEEEEEECEEETTEEECCHHHHHTTCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--TTCEE
T ss_pred --hHHHhcCCccceeccccccccccCCHHHHHHhhc----cCceEEEEcCCCCcccccCCHHHHHHHHHHHHH--cCCee
Confidence 4567788888887764 345789999999987 46799999999999999997 6778888999 99999
Q ss_pred EEeeeeccCceeecc-----ccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCC
Q 017726 173 LVDGVSSICAIDFRM-----DEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGT 245 (367)
Q Consensus 173 i~D~~~~~~~~~~~~-----~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (367)
++|+++......... ......+++.+.+|.+. .+| +|+++.++++++++..... ..
T Consensus 189 i~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~-~~G~R~g~~~~~~~~~~~~~~~~~--------------~~-- 251 (368)
T d1v2da_ 189 ISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLE-ATGYRVGWIVGPKEFMPRLAGMRQ--------------WT-- 251 (368)
T ss_dssp EEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTT-CGGGCCEEEECCTTTHHHHHHHHH--------------HH--
T ss_pred eechhhhhhcccccccccccccccccceeeccccccc-ccccccccccccccccchhhhhhh--------------cc--
Confidence 999988754332111 11234566677777653 333 6999999998876653210 00
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHH
Q 017726 246 FWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVR 324 (367)
Q Consensus 246 ~~~~~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 324 (367)
...++.....+...++....... ++++++.++++++++.+.|+++|+++..+ .+++++|+++| +.+..+
T Consensus 252 --~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~p----~g~~~~~~~l~-~~~~~~--- 321 (368)
T d1v2da_ 252 --SFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVP----EGTYFLMAELP-GWDAFR--- 321 (368)
T ss_dssp --TSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECC----SBSSEEEEECT-TCCHHH---
T ss_pred --ccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhcCcEEecC----CceeEEEEeCC-ccHHHH---
Confidence 11233333344445555544433 77888889999999999999999998887 45667888885 555443
Q ss_pred HHHhhCCeEEccCCCC----CCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 325 RAWQRYNLSLGLGLNK----VAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 325 ~L~~~~gv~v~~g~~~----~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
.| +++||.+.||..+ ...+++|||+....++.+...+.|.
T Consensus 322 ll-~~~gI~v~pg~~F~~~~~~~~~iRis~~~~~e~i~~ai~rL~ 365 (368)
T d1v2da_ 322 LV-EEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLG 365 (368)
T ss_dssp HH-HHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHH
T ss_pred HH-HhCCEEEEechhhCCCCCCCCEEEEEecCCHHHHHHHHHHHH
Confidence 34 4669999988432 2347899997543333344444444
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.1e-31 Score=241.42 Aligned_cols=338 Identities=10% Similarity=0.014 Sum_probs=245.7
Q ss_pred CcccccCCCCCChHHHHHHHccCCC------------CCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHH-
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNE------------DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWES- 75 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~------------~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~- 75 (367)
..|+|.|||..+|++|++++.+... +|+++.+.++++++|+.|++++|+++++.+++++|++++...
T Consensus 1 ~~~nF~pGP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a 80 (360)
T d1bjna_ 1 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAA 80 (360)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred CeEEeCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhh
Confidence 3689999999999999999999753 477888999999999999999999887778888777655544
Q ss_pred HHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc
Q 017726 76 ALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN 155 (367)
Q Consensus 76 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~ 155 (367)
++..+..+++.+++...+++...+...++..|..+.....+.+...+.+.++..+. ++++++++++.+|.||+..+
T Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~v~~~~~~t~~~~~ 156 (360)
T d1bjna_ 81 VPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQ----LSDNAAYMHYCPNETIDGIA 156 (360)
T ss_dssp HHHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEEETTEEEECCGGGCC----CCSSCSCEEECSEETTTTEE
T ss_pred hhhcccccccccceecccchhhhhHHHHhhcCccceeeccccCCCcchhhhhhhhc----cCCceeEEEecccccccCcc
Confidence 44556788888888888777766777788788777776655555556666665555 56788888899999999988
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechH
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (367)
++.+. ++. +++++++|++++.+..+++.. ++|+++.+++|++++|+|+++++.++...+.... ......+.
T Consensus 157 ~~~i~--~~~--~~~~v~vDa~~~~~~~~vd~~--~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 227 (360)
T d1bjna_ 157 IDETP--DFG--ADVVVAADFSSTILSRPIDVS--RYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIA---CPSILDYS 227 (360)
T ss_dssp CCCCC--CCC--TTCCEEEECTTTTTSSCCCGG--GCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTT---SCGGGCHH
T ss_pred cccee--ccc--ccceeeeeeeccccceeeeec--cceeEEEEcccccccCCCceeEeeehhhhhcccc---CCcchhhH
Confidence 77653 344 889999999999988877766 5799999999999888888888887765332221 11222222
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS 315 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 315 (367)
......+. ...++......+...++......+.+...++..+.+..+.+.+...+.....+.+..++..+++|.+|+
T Consensus 228 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~~ 304 (360)
T d1bjna_ 228 ILNDNGSM---FNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLAD 304 (360)
T ss_dssp HHHHTTTC---SSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEESS
T ss_pred HHHhhhhh---ccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccceEEEEEcCC
Confidence 22222221 133344444444554455555555777777788888888887777765555555666788899999988
Q ss_pred CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH--HHhhhh
Q 017726 316 HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF--NFQLLF 365 (367)
Q Consensus 316 ~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~--~~~~l~ 365 (367)
+.+.+++.+.|.+ .||.++.|..... .||||+++.++.+|+ +.++|+
T Consensus 305 ~~~~~~~~~~l~~-~Gi~~~~G~~~~g--~~Ris~~~~~t~edV~~li~~l~ 353 (360)
T d1bjna_ 305 SALDKLFLEESFA-AGLHALKGHRVVG--GMRASIYNAMPLEGVKALTDFMV 353 (360)
T ss_dssp GGGHHHHHHHHHH-TTEECCBCCTTTC--SEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHH-CCCEeecCCCccC--eEEEEecCCCCHHHHHHHHHHHH
Confidence 8888899998864 5999988754332 399999888776554 445554
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.97 E-value=2.8e-30 Score=232.62 Aligned_cols=323 Identities=11% Similarity=0.094 Sum_probs=219.5
Q ss_pred CChHHHHHHHccCCCCCCC------CcH-----HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeE
Q 017726 19 HIPDQVIRAMNRNNEDYRS------PAV-----PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRI 87 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~~~------~~~-----~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~v 87 (367)
.+++++.+++.++...+.. ... ....+.+++.+|+++|.+ ++++|+||++|+..++.++++|||.|
T Consensus 13 ~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g~e---~~~~t~g~t~a~~~~~~al~~~gd~V 89 (364)
T d2e7ja1 13 KLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD---VARVTNGAREAKFAVMHSLAKKDAWV 89 (364)
T ss_dssp CCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS---EEEEESSHHHHHHHHHHHHCCTTCEE
T ss_pred cCCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHhCcC---EEEEECcHHHHHHHHHHHHhCCCcEE
Confidence 3678889999887553211 101 125678999999999974 37889999999999999999999999
Q ss_pred EEEeCCcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccC-CCCccEEEEEecCCCccccccHHHHHHHHH
Q 017726 88 ISFLIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADT-AHTIKAICIVHNETATGVTNNLSKVRKLLD 164 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~-~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~ 164 (367)
+++.++|++.. ..++..|++++.+|.+. ++.+|++++++++++.+ ..++++|++++++|+||.+.|+++|.++|+
T Consensus 90 i~~~~~h~s~~--~~~~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~ 167 (364)
T d2e7ja1 90 VMDENCHYSSY--VAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCS 167 (364)
T ss_dssp EEETTCCHHHH--HHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred Eeecccccccc--hHHHhccceEEEeeeccccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchhheeccc
Confidence 99999998864 34678899999999864 46789999999998754 134678999999999999999999999999
Q ss_pred hcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcC
Q 017726 165 EYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLG 244 (367)
Q Consensus 165 ~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (367)
+ +|+++++|++|+.+..+.+....++|++++|+||+++++.|+|+++.++++++.+.......... ...+..+
T Consensus 168 ~--~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 240 (364)
T d2e7ja1 168 E--YDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNK-----EVELLGC 240 (364)
T ss_dssp T--TTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTS-----BGGGTTC
T ss_pred c--ccchhhccccchhhhhhhcccccccceeeeccccccCCCCCEEEEEECHHHHHHHHhhccccCcc-----ccccccc
Confidence 9 99999999999999998888888999999999999987777899999998876554322111000 0001111
Q ss_pred CccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCC--------
Q 017726 245 TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH-------- 316 (367)
Q Consensus 245 ~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~-------- 316 (367)
+.......++.+++....+. ++.. .+..++++++.+.|++.|+......+. ....+++..+..
T Consensus 241 -----~~~~~~~~~~~~~l~~~~~~-~~~~-~~~~~~~~~~~~~l~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 311 (364)
T d2e7ja1 241 -----TARGATIITLMASFPHVRER-IKRW-DEEVEKARRFAAEMEKLGIKQLGDNPH--NHDLMFFHAEVLYEISKKAK 311 (364)
T ss_dssp -----CCCSHHHHHHHHHHHHHHHH-GGGH-HHHHHHHHHHHHHHHHTTCEEESSSSC--CSSEEEEECHHHHHHHHHSS
T ss_pred -----ccchhHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHcCCeecCCCCC--CcceEEEeccchHHHHHHhh
Confidence 22333334555566555433 2222 233467778899999988877664332 222344443210
Q ss_pred CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCC-CCHHHHHHhhhhc
Q 017726 317 INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH-LNEVMFNFQLLFQ 366 (367)
Q Consensus 317 ~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~-~~~~~~~~~~l~~ 366 (367)
.....+...|.. .++... .+.....+|++.++. .++.|...++|++
T Consensus 312 ~~~~~~~~~l~~-~~~~~~---~~g~~~~~~~~~~~~t~edid~~~~~l~e 358 (364)
T d2e7ja1 312 GGRFFLYRELKS-RKIHGI---KPGLTRYFKLSTYGLSDEEVDYVLNAFKE 358 (364)
T ss_dssp SGGGHHHHHHHH-TTEECS---CTTCCSEEEEECTTCCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHh-cCCcee---cCCCcceEEEeccCCCHHHHHHHHHHHHH
Confidence 011123344433 355432 222345688886553 3345555555543
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.97 E-value=7.9e-31 Score=235.92 Aligned_cols=336 Identities=13% Similarity=0.076 Sum_probs=237.4
Q ss_pred CCcccccCCCCCChHHHHHHHccCCC------------CCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHH
Q 017726 8 GKNHLFVPGPVHIPDQVIRAMNRNNE------------DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWES 75 (367)
Q Consensus 8 ~~~~~~~~~p~~~~~~v~~a~~~~~~------------~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~ 75 (367)
.++|+|.|||.++|++|++++.+... +||++.+.+.++++|+.+++++++++++.+++++|++++...
T Consensus 2 ~~~~nF~pGP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~ 81 (360)
T d1w23a_ 2 KQVFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFT 81 (360)
T ss_dssp CCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHH
T ss_pred CceeEeCCCCcCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHH
Confidence 36789999999999999999998653 367888999999999999999999988778888887766654
Q ss_pred -HHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc
Q 017726 76 -ALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN 154 (367)
Q Consensus 76 -~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~ 154 (367)
+...+..+++.+++...++++.++...++..+...............++.++.... .+.+++..|.||.+.
T Consensus 82 ~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~tg~~~ 153 (360)
T d1w23a_ 82 MLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANSYQSIPDFSEFQL--------NENDAYLHITSNNTI 153 (360)
T ss_dssp HHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGTSCSCCCGGGCCC--------CTTEEEEEEESEETT
T ss_pred HHHhhhcccCcccceeeccchhhhhHHHHHHhhhcceeeccccccccchhhhhhccc--------ccccceeEecCCccc
Confidence 44456778889999988888888777788888777776655433334444433322 222445567799999
Q ss_pred cHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeech
Q 017726 155 NLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDW 234 (367)
Q Consensus 155 ~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 234 (367)
|++++.++|++ +|+++++|+++++++.++++.++++|++.++.+|++ ++|.|+++.++...+... .......+
T Consensus 154 ~~~~i~~~~~~--~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~ 226 (360)
T d1w23a_ 154 YGTQYQNFPEI--NHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGP--SGVTVVIVKKDLLNTKVE---QVPTMLQY 226 (360)
T ss_dssp TTEECSSCCCC--CSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSC--TTCEEEEEEHHHHCSCCT---TCCGGGCH
T ss_pred cceeeeecccc--ceeeEEeeccccccccccccccccceEEeecccccc--CCcceeeEechhhhcccc---cCCcchhh
Confidence 99999999999 999999999999999999999999999988888854 445566666655432221 11122222
Q ss_pred HHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEE
Q 017726 235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVI 312 (367)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 312 (367)
.......+ ...++......+...++....+.+ .....++............... .......++..++..+++|+
T Consensus 227 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvsf~ 302 (360)
T d1w23a_ 227 ATHIKSDS----LYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFN 302 (360)
T ss_dssp HHHHHTTT----CSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEE
T ss_pred hhhhhhhh----hcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCChhhcceeEEEEE
Confidence 22222222 133455555556666666666655 4455555566666666665554 44555555666788899999
Q ss_pred cCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCC--HHHHHHhhhh
Q 017726 313 VPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLN--EVMFNFQLLF 365 (367)
Q Consensus 313 ~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~--~~~~~~~~l~ 365 (367)
++++.+.+++.+.|. ++||.++.|..... .+|||+++.++ +.+.+.++++
T Consensus 303 i~~~~~~~~~~~~l~-~~GI~~~~G~~~~g--giRiS~~~~~t~e~V~~Li~~~~ 354 (360)
T d1w23a_ 303 LRNEELNQQFLAKAK-EQGFVGLNGHRSVG--GCRASIYNAVPIDACIALRELMI 354 (360)
T ss_dssp CSSHHHHHHHHHHHH-HTTEESCBCCTTTC--SEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHH-HCCCeeeeCCCccC--cEEEEeeCCCCHHHHHHHHHHHH
Confidence 977666788988885 55999988865432 49999988665 4455555544
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.97 E-value=2e-30 Score=237.64 Aligned_cols=326 Identities=11% Similarity=0.051 Sum_probs=223.3
Q ss_pred cccccCCCC--CChHHHHHHHccCCCC----CCCCcHHHHHHHHHHHHHHHh----cCC--CCceEEecCChhHHHHHHH
Q 017726 10 NHLFVPGPV--HIPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIF----KTT--SGTPFLIPTTGTGAWESAL 77 (367)
Q Consensus 10 ~~~~~~~p~--~~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~----~~~--~~~~v~~~~ggt~al~~~~ 77 (367)
.++++.|-+ ++|+.+++++.+.... ..+|....+..++|+.|++++ |.+ +.++|++|+|+++|+..++
T Consensus 28 ~I~L~~G~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~ 107 (418)
T d2r5ea1 28 PLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATI 107 (418)
T ss_dssp CEECSSSCCSSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHH
T ss_pred CEEccCCCCCCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhh
Confidence 355666544 3567788887664332 123433344556666666654 554 3456999999999999999
Q ss_pred HccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC----------CCCCHHHHHHHHhccCCCCccEEEEEecC
Q 017726 78 TNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG----------EGAKLDVLASKLAADTAHTIKAICIVHNE 147 (367)
Q Consensus 78 ~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~----------~~~d~e~l~~~i~~~~~~~~~lv~~~~~~ 147 (367)
++++++||.|++++|.|+.+. ..+...|.+++.++++.+ +..+.+++.+... ++++++++++||
T Consensus 108 ~~l~~~gd~vlv~~P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~p~ 181 (418)
T d2r5ea1 108 QGHVDEGDEVIIIEPFFDCYE--PMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFN----EKTKMIIINTPH 181 (418)
T ss_dssp HHHCCTTCEEEEEESCCTTHH--HHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCC----TTEEEEEEESSC
T ss_pred hhccccccceeccccccchhh--HHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhh----ccccceecCCcC
Confidence 999999999999999887754 557778999999887543 2456777777765 578999999999
Q ss_pred CCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccCceee-------cc-ccccceEEEecCCCcccC-CCcceeeeeC
Q 017726 148 TATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAIDF-------RM-DEWGIDVALTGSQKALSL-PTGMGIVCAS 215 (367)
Q Consensus 148 n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~-------~~-~~~~~d~~~~s~~K~~~g-~~g~g~~~~~ 215 (367)
||||.+++ +++|.++|++ ++++||+|++|......- .. ......+++.|++|.++. ..++|+++.+
T Consensus 182 NPtG~~~s~e~~~~l~~~a~~--~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~ 259 (418)
T d2r5ea1 182 NPLGKVMDRAELEVVANLCKK--WNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGP 259 (418)
T ss_dssp TTTCCCCCHHHHHHHHHHHHH--HTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEESC
T ss_pred ccccccccHHHHHHHhhhhhc--CCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCccccccccc
Confidence 99999997 5568888888 999999999987543210 11 122456888999999852 2347999999
Q ss_pred HHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH---H--hC-hHHHHHHHHHHHHHHHHHH
Q 017726 216 PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF---E--EG-LENVIERHRRLGKATRLAV 289 (367)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~---~--~g-~~~~~~~~~~~~~~l~~~L 289 (367)
+++++.+..... .. .+..+.....++...+.... + +. +++++++++.+++.+.+.|
T Consensus 260 ~~~i~~~~~~~~----------------~~--~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L 321 (418)
T d2r5ea1 260 EALLKNLQMVHQ----------------NC--VYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFL 321 (418)
T ss_dssp HHHHHHHHHHHT----------------TT--TCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhccc----------------cc--ccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhH
Confidence 999887764211 00 11233222122222222111 0 11 6678888999999999999
Q ss_pred HHcCCccccCCCccCCCceEEEEcC------------CCCCHHHHHHHHHhhCCeEEccCCCCCC-------CcEEEEee
Q 017726 290 EAWGLKNCTQKEEWFSDTVTAVIVP------------SHINSSEIVRRAWQRYNLSLGLGLNKVA-------GKVFRIGH 350 (367)
Q Consensus 290 ~~~g~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~L~~~~gv~v~~g~~~~~-------~~~iRi~~ 350 (367)
++.|+.+..| .+++++|++++ +..+..++++.|.+++||.+.||..+.. .++||||+
T Consensus 322 ~~~g~~~~~P----~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~ 397 (418)
T d2r5ea1 322 AEVGMNPTVP----QGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCF 397 (418)
T ss_dssp HHTTCEEEEC----SBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEEC
T ss_pred hhcCCcccCC----CceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEe
Confidence 9999988877 57777888763 1235678999998888999999854321 35799998
Q ss_pred cCCCCHHHHHHhhhh
Q 017726 351 LGHLNEVMFNFQLLF 365 (367)
Q Consensus 351 ~~~~~~~~~~~~~l~ 365 (367)
....++.+...+.|+
T Consensus 398 ~~~~e~l~~a~~rl~ 412 (418)
T d2r5ea1 398 FKKDENLQKAAEILR 412 (418)
T ss_dssp CSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 543333333444443
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.97 E-value=8.1e-31 Score=239.55 Aligned_cols=339 Identities=16% Similarity=0.086 Sum_probs=245.6
Q ss_pred CCCCCCcccccCCCCCChHHHHHHHccCCCCC-CC--------CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHH
Q 017726 4 MYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDY-RS--------PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWE 74 (367)
Q Consensus 4 ~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~-~~--------~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~ 74 (367)
...+..+|++.++-+++|..|++++.++.... .. ..+.+..+++|+.+++++|+++++ +++++|+|+++.
T Consensus 23 ~~~~~~iYLd~as~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~e-i~~~~~~T~~~~ 101 (404)
T d1qz9a_ 23 ALPEGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGE-VVVTDTTSINLF 101 (404)
T ss_dssp CCCTTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTS-EEECSCHHHHHH
T ss_pred CCCCCCEEcCCcccccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCCc-EEEecCchHHHH
Confidence 34556788999999999999999987754221 11 122356789999999999999876 999999999998
Q ss_pred HHHHc------cCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEec
Q 017726 75 SALTN------TLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHN 146 (367)
Q Consensus 75 ~~~~~------~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~ 146 (367)
.++.. ...+++.|++.+..+++.. +.... .++..++.+.++..+++.++++++ ++|++|++++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~----~~T~lV~i~~v 173 (404)
T d1qz9a_ 102 KVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGL----ADMLQQGYTLRLVDSPEELPQAID----QDTAVVMLTHV 173 (404)
T ss_dssp HHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHH----HHHHCSSCEEEEESSGGGHHHHCS----TTEEEEEEESB
T ss_pred HHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhh----heeeeeceeccccccchhHHHhcC----CCceEEEEecc
Confidence 76643 2468889999988888764 22211 222222223334567889999988 57899999999
Q ss_pred CCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCcccCCCc-ceeeeeCHHHHHHhccC
Q 017726 147 ETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTG-MGIVCASPKALEASKTA 225 (367)
Q Consensus 147 ~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g-~g~~~~~~~~~~~~~~~ 225 (367)
+|.||.+.|+++|.++|++ +|+++++|++|+.+..++++...++|++++|+|||+.+++| +|+++.++...+.+...
T Consensus 174 ~~~tG~~~pv~~i~~~~~~--~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~~~ 251 (404)
T d1qz9a_ 174 NYKTGYMHDMQALTALSHE--CGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQP 251 (404)
T ss_dssp CTTTCBBCCHHHHHHHHHH--HTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCS
T ss_pred cccccceecHHHHhccccc--cccceeEEeeccccccccccccccceEEEEechhhcccCCceEEEEEechhhhhhCCcc
Confidence 9999999999999999999 99999999999999999999999999999999999977665 68999998887665533
Q ss_pred CCCceee----------chHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH---c
Q 017726 226 KSVRVFF----------DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA---W 292 (367)
Q Consensus 226 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~---~ 292 (367)
....... .......++ ..++++......+..++..+.+.+.+.+.++...+...+.+.+.. .
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~ 326 (404)
T d1qz9a_ 252 LSGWFGHSRQFAMEPRYEPSNGIARY-----LCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAA 326 (404)
T ss_dssp CCCGGGBCTTSCCCSSCCBCSSGGGG-----CCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCccccccccccccccccchhh-----hhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhccC
Confidence 2211100 000011222 344688888888899999998888888777777777776665443 3
Q ss_pred -CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEee-cCCCCHHH--HHHhhhhc
Q 017726 293 -GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGH-LGHLNEVM--FNFQLLFQ 366 (367)
Q Consensus 293 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~-~~~~~~~~--~~~~~l~~ 366 (367)
|+.+++|........++.|..+ ++.++.+.|.+ .||.+.. ..++.||||+ +.+++.+| .+.++|++
T Consensus 327 ~~~~i~~p~~~~~r~~~vsf~~~---~~~~v~~~L~~-~gi~~~~----r~~~~lRiS~~h~ynt~~did~~~~~L~~ 396 (404)
T d1qz9a_ 327 HELTLVTPREHAKRGSHVSFEHP---EGYAVIQALID-RGVIGDY----REPRIMRFGFTPLYTTFTEVWDAVQILGE 396 (404)
T ss_dssp SCCEECSCSSGGGBCSEEEEECT---THHHHHHHHHT-TTEECEE----ETTTEEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred CCEEEECCCCccceeeEEEEecC---CHHHHHHHHHH-CCCEEee----cCCCeEEEECCCCCCCHHHHHHHHHHHHH
Confidence 7888876544344457888875 57889999965 4986531 1246899997 34566554 44455543
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=4.7e-29 Score=224.25 Aligned_cols=305 Identities=13% Similarity=0.016 Sum_probs=206.4
Q ss_pred CCChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHH----hcCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEe
Q 017726 18 VHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKI----FKTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFL 91 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~----~~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~ 91 (367)
.++|+.+.+++.+.... ..+|..... .++|+.++++ +|.+ ++++|++|+|+++++..++.+++++||+|++++
T Consensus 11 f~~p~~i~eal~~~~~~~~~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~ 89 (361)
T d1d2fa_ 11 FATAPCIIEALNQRLMHGVFGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHT 89 (361)
T ss_dssp SCCCHHHHHHHHHHHTTCCCCCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhcccccccccccc
Confidence 45667778777774332 112211111 2455555554 4665 446799999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCCceEEEeCCC---CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHh
Q 017726 92 IGQFSLLWIDQQQRLNFNVDVVESDW---GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE 165 (367)
Q Consensus 92 ~~~~~~~~~~~~~~~g~~~~~v~~~~---~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~ 165 (367)
|.|+.+. .+++..|.+++.++.+. ++.+|++.+++.+.+ +++|++++++|+||||.+++ +++|.++|++
T Consensus 90 P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~---~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~ 164 (361)
T d1d2fa_ 90 PAYDAFY--KAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK---PECKIMLLCSPQNPTGKVWTCDELEIMADLCER 164 (361)
T ss_dssp SCCHHHH--HHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS---TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHH
T ss_pred ccccchh--HHHHhhcceEEeecccccccccccccccchhhccc---CCceeEEecccccccccccchhhhhhhhhhhhh
Confidence 9877653 55777899988887643 345899999999875 57899999999999999986 7788999999
Q ss_pred cCCCcEEEEeeeeccCcee----ecc--ccccceEEEecCCCcccC-CCcceeeeeCHHH-HHHhccCCCCceeechHHH
Q 017726 166 YRHPALFLVDGVSSICAID----FRM--DEWGIDVALTGSQKALSL-PTGMGIVCASPKA-LEASKTAKSVRVFFDWKDY 237 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~----~~~--~~~~~d~~~~s~~K~~~g-~~g~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 237 (367)
+|+++|+|++|...... ... ...+..+++.|++|.++. ..++|+++..... .+.....
T Consensus 165 --~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~------------ 230 (361)
T d1d2fa_ 165 --HGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSA------------ 230 (361)
T ss_dssp --TTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHH------------
T ss_pred --hheeeeecccccccccccccccccccccccccccccccccccccccccceeeecchhHHHHHHhhh------------
Confidence 99999999998754321 111 112345888889998742 2336887765433 2222210
Q ss_pred HHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCCceEEEEcC-
Q 017726 238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVP- 314 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~- 314 (367)
.. ......+++...+.+...++....+. .++.++.+.++++.+.+.+.+. ++.+..| .+++++|++++
T Consensus 231 ---~~-~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p----~gg~~~~~~l~~ 301 (361)
T d1d2fa_ 231 ---LK-GRDGLSSPSVLALTAHIAAYQQGAPW-LDALRIYLKDNLTYIADKMNAAFPELNWQIP----QSTYLAWLDLRP 301 (361)
T ss_dssp ---HH-TTSCCCSCCHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHCSSCCCCCC----SBCSEEEEECGG
T ss_pred ---cc-cccccccchhhhHHHHHHHhhccchh-hhcccccchhhHHHHHHHhhhhccccccccc----CceeEEEEEccC
Confidence 11 11112245554433333333332222 5667777788888888887774 6666666 45567788873
Q ss_pred CCCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeec
Q 017726 315 SHINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHL 351 (367)
Q Consensus 315 ~~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~ 351 (367)
.+.+..+++++|.+++||.+.||..+ ...+++|||+.
T Consensus 302 ~~~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~ 340 (361)
T d1d2fa_ 302 LNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAG 340 (361)
T ss_dssp GCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC
T ss_pred CCCCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEc
Confidence 46789999999988889999988543 33467999964
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.4e-29 Score=229.32 Aligned_cols=326 Identities=12% Similarity=0.022 Sum_probs=226.7
Q ss_pred cccccCCCC--CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cCC--CCceEEecCChhHHHHHHHHcc
Q 017726 10 NHLFVPGPV--HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT--SGTPFLIPTTGTGAWESALTNT 80 (367)
Q Consensus 10 ~~~~~~~p~--~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~~--~~~~v~~~~ggt~al~~~~~~~ 80 (367)
.++++.|-+ ++|+.+.+++.+.... ..+|....+..++|+.+++++ |.+ ++++|++|+|+++++..+++++
T Consensus 28 ~i~l~~G~Pd~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l 107 (382)
T d1u08a_ 28 AINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITAL 107 (382)
T ss_dssp CEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHH
T ss_pred CEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhc
Confidence 355666554 5677888877765433 224444455567777777665 554 3345999999999999999999
Q ss_pred CCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHH-
Q 017726 81 LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSK- 158 (367)
Q Consensus 81 ~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~- 158 (367)
+++||.|++++|.|+.+. ......|..+..++.+.+ +.+|++++++.+. ++++++++++||||||.+++.++
T Consensus 108 ~~~gd~vl~~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~i~l~~P~NPtG~v~~~~~~ 181 (382)
T d1u08a_ 108 VRNGDEVICFDPSYDSYA--PAIALSGGIVKRMALQPPHFRVDWQEFAALLS----ERTRLVILNTPHNPSATVWQQADF 181 (382)
T ss_dssp CCTTCEEEEEESCCTTHH--HHHHHTTCEEEEEECCTTTCCCCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHH
T ss_pred ccccceEEEecccccchh--hhhhhccccceecccccccccCCHHHHhhhhc----cCccEEEECCCCcccccccccccc
Confidence 999999999999887754 446678888888877643 5679999998887 57899999999999999998655
Q ss_pred --HHHHHHhcCCCcEEEEeeeeccCceee----cc----ccccceEEEecCCCcccC-CCcceeeeeCHHHHHHhccCCC
Q 017726 159 --VRKLLDEYRHPALFLVDGVSSICAIDF----RM----DEWGIDVALTGSQKALSL-PTGMGIVCASPKALEASKTAKS 227 (367)
Q Consensus 159 --i~~~~~~~~~~~~vi~D~~~~~~~~~~----~~----~~~~~d~~~~s~~K~~~g-~~g~g~~~~~~~~~~~~~~~~~ 227 (367)
|.++|++ ++++++.|+.+....... .. ......+++.|++|.++. ..++|++++++++++.+.....
T Consensus 182 ~~l~~~~~~--~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~~~~~~~~~~~~~ 259 (382)
T d1u08a_ 182 AALWQAIAG--HEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQ 259 (382)
T ss_dssp HHHHHHHTT--SCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHH
T ss_pred hhhhhhhcc--ccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccchhhhccchhHHHHHhhhc
Confidence 5555555 899999998876533211 00 011245889999998852 2447999999999887653210
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCc
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDT 307 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 307 (367)
.. ....+.....++..++..-.+. +++.+++++++++.+.+.++..|+.+..+ .+++
T Consensus 260 -------------~~-----~~~~~~~~q~a~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~~p----~gg~ 316 (382)
T d1u08a_ 260 -------------YL-----TFSVNTPAQLALADMLRAEPEH-YLALPDFYRQKRDILVNALNESRLEILPC----EGTY 316 (382)
T ss_dssp -------------HH-----TSSCCHHHHHHHHHHHHHCTHH-HHTHHHHHHHHHHHHHHHTTSSSCEECCC----CBSS
T ss_pred -------------cc-----ccccccccccccccccccchHH-HHHHHHHHHhhhhhhhhhhccCCcEEecC----CceE
Confidence 00 1124443334444444432222 67788888999999999887778888877 5777
Q ss_pred eEEEEcCC--CCCHHHHHHHHHhhCCeEEccCCCC----CCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 308 VTAVIVPS--HINSSEIVRRAWQRYNLSLGLGLNK----VAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 308 ~~~~~~~~--~~~~~~l~~~L~~~~gv~v~~g~~~----~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
++|++++. ..+..+++++|.+++||.+.||..+ ...++|||++....++.+...+.|++
T Consensus 317 ~~~~~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 317 FLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ 381 (382)
T ss_dssp EEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred EEEEecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHhC
Confidence 88999864 4678899999988889999998543 23467999975433333334444444
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.97 E-value=2e-30 Score=235.74 Aligned_cols=307 Identities=13% Similarity=0.083 Sum_probs=209.6
Q ss_pred CCCChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 17 PVHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 17 p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
+.++|+.+.+++.+.... ..+|....+..++|+.+++++ |.+ .++++++++|+++++.+++.+++.+||.|+++
T Consensus 44 df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~ 123 (395)
T d1xi9a_ 44 DFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVP 123 (395)
T ss_dssp TCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchhhhhhhhhhcCCCCEEEEc
Confidence 357788888888875433 223433344556666666665 554 34569999999999999999999999999999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHh
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE 165 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~ 165 (367)
+|.|+.+ ...++..|.+++.++.. .++.+|++++++.+. ++++++++++||||||.+++ +++|.++|++
T Consensus 124 ~P~y~~~--~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~----~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~ 197 (395)
T d1xi9a_ 124 GPSYPPY--TGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKIT----DRTKAIAVINPNNPTGALYDKKTLEEILNIAGE 197 (395)
T ss_dssp ESCCHHH--HHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CCccccc--hhhhhhcCCEEEEEeccccccccchHHHHHHhhc----ccccEEEecCCCCCccchhhHHHHHHHHhhhhh
Confidence 9987654 35678899999888754 356789999999887 57799999999999999997 5678888888
Q ss_pred cCCCcEEEEeeeeccCcee------eccccccceEEEecCCCcccCCCc--ceeeeeCH--HHHHHhccCCCCceeechH
Q 017726 166 YRHPALFLVDGVSSICAID------FRMDEWGIDVALTGSQKALSLPTG--MGIVCASP--KALEASKTAKSVRVFFDWK 235 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~------~~~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~--~~~~~~~~~~~~~~~~~~~ 235 (367)
++++|+.|++|...... .........+++.|+||.++ .+| +|+++... ..++.+...
T Consensus 198 --~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~-~~GlRvG~~~~~~~~~~~~~~~~~---------- 264 (395)
T d1xi9a_ 198 --YEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYF-ATGWRLGYMYFVDPENKLSEVREA---------- 264 (395)
T ss_dssp --HTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTC-CGGGCCEEEEEECTTCTTHHHHHH----------
T ss_pred --cCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcc-cchhhcEeeEecCHHHHHHHHHHH----------
Confidence 99999999998753321 11222234688999999885 444 58776432 222222110
Q ss_pred HHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcC
Q 017726 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~ 314 (367)
...+... ...++.....++..++....+ -+++.++.+.++++.+.+.|++. ++.+..| .+++++|++++
T Consensus 265 --~~~~~~~---~~~~~~~~q~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p----~gg~~~~~~l~ 334 (395)
T d1xi9a_ 265 --IDRLARI---RLCPNTPAQFAAIAGLTGPMD-YLKEYMKKLKERRDYIYKRLNEIPGISTTKP----QGAFYIFPKIE 334 (395)
T ss_dssp --HHHHHHH---TCCSCSHHHHHHHHHHHSCCH-HHHHHHHHHHHHHHHHHHHHHTSTTEECCCC----CBSSEECCEEC
T ss_pred --HHHhhcC---CCCcCHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHHHHHHHhCCCceecCC----CeeEEEeEECC
Confidence 0011101 111333222222222221111 17778888999999999999998 4566555 45667777775
Q ss_pred CC--CCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecC
Q 017726 315 SH--INSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLG 352 (367)
Q Consensus 315 ~~--~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~~ 352 (367)
.+ .+..++++.|.+++||.+.||..+ ...+++||++..
T Consensus 335 ~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~ 376 (395)
T d1xi9a_ 335 VGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLP 376 (395)
T ss_dssp SCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCS
T ss_pred CCCCCCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEecC
Confidence 43 467788888888889999998543 335689999743
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.97 E-value=3.2e-30 Score=236.03 Aligned_cols=310 Identities=11% Similarity=0.033 Sum_probs=209.5
Q ss_pred CCCChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhc----------C-CCCceEEecCChhHHHHHHHHccCCC
Q 017726 17 PVHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFK----------T-TSGTPFLIPTTGTGAWESALTNTLSP 83 (367)
Q Consensus 17 p~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~----------~-~~~~~v~~~~ggt~al~~~~~~~~~~ 83 (367)
|..+++.+++++.+.... ..+|....+..++|+.+++++. . -.+++|++|+|+++++..++.+++++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~ 124 (412)
T d1bw0a_ 45 NLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDA 124 (412)
T ss_dssp CSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCT
T ss_pred CccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhhcc
Confidence 445677788887764221 2234444556678888877763 1 13456999999999999999999999
Q ss_pred CCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHH
Q 017726 84 GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSK 158 (367)
Q Consensus 84 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~ 158 (367)
||.|++++|.|..+. ..++..|++++.+++++ ++..+++++++.+. ++++++++++||||||.+++ +++
T Consensus 125 Gd~Vlv~~P~y~~~~--~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~----~~~~~~~l~np~NPtG~~~~~~~~~~ 198 (412)
T d1bw0a_ 125 GDYALVPQPGFPHYE--TVCKAYGIGMHFYNCRPENDWEADLDEIRRLKD----DKTKLLIVTNPSNPCGSNFSRKHVED 198 (412)
T ss_dssp TCEEEEEESCCTHHH--HHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred ccceeeeeccchhhh--hhhhccCccccccccccccccchhhHHHHhhhh----ccccccccccccccccccchhhhccc
Confidence 999999999877643 56788999999999865 44678999988876 57799999999999999986 556
Q ss_pred HHHHHHhcCCCcEEEEeeeeccCceee-----------ccccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccC
Q 017726 159 VRKLLDEYRHPALFLVDGVSSICAIDF-----------RMDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTA 225 (367)
Q Consensus 159 i~~~~~~~~~~~~vi~D~~~~~~~~~~-----------~~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~ 225 (367)
|.++|++ ++++||+|++|......- +......-+++.|++|.++ .+| +|+++++++.......
T Consensus 199 i~~~~~~--~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~-~~G~RvG~~~~~~~~~~~~~~- 274 (412)
T d1bw0a_ 199 IVRLAEE--LRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLV-VPGWRLGWLLYVDPHGNGPSF- 274 (412)
T ss_dssp HHHHHHH--HTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTS-CGGGCCEEEEEECTTCSCHHH-
T ss_pred ccccccc--CCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCc-cCCCCcccccccchhhcchhh-
Confidence 7777777 999999999987543210 1111123477788999884 444 6999876433211000
Q ss_pred CCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccC
Q 017726 226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWF 304 (367)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~ 304 (367)
.......... .....+..+..+.........+ -++++++++.++++.+.+.|.+. |+.+..| .
T Consensus 275 ---------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~l~~~~g~~~~~p----~ 338 (412)
T d1bw0a_ 275 ---------LEGLKRVGML--VCGPCTVVQAALGEALLNTPQE-HLDQIVAKIEESAMYLYNHIGECIGLAPTMP----R 338 (412)
T ss_dssp ---------HHHHHHHHHH--HTCSCHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHHTTSTTEEECCC----C
T ss_pred ---------hhhhcccccc--ccCCchhhhhhccccccccccc-ccccccchhHHHHHHHHHHHHHhcCceecCC----C
Confidence 0000000000 0111222211111111111111 26778888999999999999886 8887776 4
Q ss_pred CCceEEEEcC-----CCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC
Q 017726 305 SDTVTAVIVP-----SHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352 (367)
Q Consensus 305 ~~~~~~~~~~-----~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~ 352 (367)
+++++|.+++ +..+..+++++|.+++||.+.||..+..++++||++..
T Consensus 339 gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis~~~ 391 (412)
T d1bw0a_ 339 GAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTR 391 (412)
T ss_dssp BTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS
T ss_pred CceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEcC
Confidence 6667777774 22367899999988889999999766567799999743
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.97 E-value=2.4e-29 Score=227.36 Aligned_cols=307 Identities=18% Similarity=0.129 Sum_probs=218.8
Q ss_pred cccccCCCC--CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhc----CC-CCceEEecCChhHHHHHHHHccC
Q 017726 10 NHLFVPGPV--HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFK----TT-SGTPFLIPTTGTGAWESALTNTL 81 (367)
Q Consensus 10 ~~~~~~~p~--~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~----~~-~~~~v~~~~ggt~al~~~~~~~~ 81 (367)
.+.++-|-+ ++|+.+.+++.+.... ..+|....+..++|+.++++++ .+ +++++++|+|+++++..++.+++
T Consensus 30 vI~l~~G~p~~~~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~ 109 (375)
T d1o4sa_ 30 VINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL 109 (375)
T ss_dssp CEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHC
T ss_pred eEECCCcCCCCCCCHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHHh
Confidence 445555432 4678888888775432 2234434455677777776654 33 34569999999999999999999
Q ss_pred CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---H
Q 017726 82 SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---L 156 (367)
Q Consensus 82 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~ 156 (367)
++||.|++++|.|+.+. ......+.....++... ++.+|.+.++.... ++++++++++|+||||.+++ +
T Consensus 110 ~~gd~vlv~~P~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~nP~NPTG~~~s~~~~ 183 (375)
T d1o4sa_ 110 DPGDEVIVFSPVWVSYI--PQIILAGGTVNVVETFMSKNFQPSLEEVEGLLV----GKTKAVLINSPNNPTGVVYRREFL 183 (375)
T ss_dssp CTTCEEEEEESCCTTHH--HHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCC----TTEEEEEEESSCTTTCCCCCHHHH
T ss_pred CCCCEEEEccCccccch--hhhhccccccccccccccccccchhHHHHHhhc----cCccEEEEeCCCCCccCCCCHHHH
Confidence 99999999999877754 44566788888877764 34667788777665 57799999999999999986 5
Q ss_pred HHHHHHHHhcCCCcEEEEeeeeccCceeec-------cccccceEEEecCCCccc-CCCcceeeeeCHHHHHHhccCCCC
Q 017726 157 SKVRKLLDEYRHPALFLVDGVSSICAIDFR-------MDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSV 228 (367)
Q Consensus 157 ~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~-------~~~~~~d~~~~s~~K~~~-g~~g~g~~~~~~~~~~~~~~~~~~ 228 (367)
++|.++|++ |+++|++|++|........ ....+..+++.|+||.++ ....+|+++++++.++.+.....
T Consensus 184 ~~i~~~a~~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~~~~~~~~~~~~~- 260 (375)
T d1o4sa_ 184 EGLVRLAKK--RNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQS- 260 (375)
T ss_dssp HHHHHHHHH--HTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHH-
T ss_pred HHHHHhHHH--cCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCccccccccccccchhhhhhhhc-
Confidence 668888888 9999999998875433211 122356799999999985 22336999999998876653210
Q ss_pred ceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCce
Q 017726 229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV 308 (367)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 308 (367)
... ...+.. ....+...+ +.......+.+.++++.+.+.|++.|+.+..| .++++
T Consensus 261 -------------~~~----~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~l~~~g~~~~~p----~gg~f 315 (375)
T d1o4sa_ 261 -------------HTT----SCINTV---AQYAALKAL-EVDNSYMVQTFKERKNFVVERLKKMGVKFVEP----EGAFY 315 (375)
T ss_dssp -------------HHT----CSCCHH---HHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCC----SBSSE
T ss_pred -------------ccc----cccccc---chhhhhhhc-ccchhhhHHHHHHHHHHHHHHHHhcCceEecC----CccEE
Confidence 001 112221 122222222 22356677888899999999999999888777 46678
Q ss_pred EEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC
Q 017726 309 TAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352 (367)
Q Consensus 309 ~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~ 352 (367)
+|++++. +..+++++|.+++||.+.||..+..+++|||++..
T Consensus 316 ~~~~~~~--~~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~~ 357 (375)
T d1o4sa_ 316 LFFKVRG--DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFAT 357 (375)
T ss_dssp EEEECSS--CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS
T ss_pred EEEECCC--CHHHHHHHHHHhCCEEEEEccccCCCCeEEEEEcC
Confidence 8888853 57788888887789999999776667799999753
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.97 E-value=9.3e-29 Score=224.77 Aligned_cols=310 Identities=10% Similarity=0.010 Sum_probs=207.7
Q ss_pred cccccCCCC--CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccC
Q 017726 10 NHLFVPGPV--HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTL 81 (367)
Q Consensus 10 ~~~~~~~p~--~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~ 81 (367)
.+.++-|-+ ++|+.+++++.+.... ..+|. ....++|+.+++++ |.+ ++++|++|+|+++++..++.+++
T Consensus 33 vi~l~~g~pdf~~p~~v~~al~~~~~~~~~~Y~--~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~~ 110 (394)
T d1c7na_ 33 VVPLSVADMEFKNPPELIEGLKKYLDETVLGYT--GPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT 110 (394)
T ss_dssp CCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSB--CCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC
T ss_pred eEEccCCCCCCCCCHHHHHHHHHHHhCCCcCCC--CCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhcccc
Confidence 345554433 5678888888764322 22221 11235666666665 554 44679999999999999999999
Q ss_pred CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCC---CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---
Q 017726 82 SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESD---WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN--- 155 (367)
Q Consensus 82 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~--- 155 (367)
+|||.|+++.|.|+... ...+..|.+.+.++.. ..+.+|.+.++.++.. ++++++++++||||||.+++
T Consensus 111 ~pgd~vi~~~p~~~~~~--~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~i~l~~P~NPTG~v~s~~~ 185 (394)
T d1c7na_ 111 KPGDGVIIITPVYYPFF--MAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD---KNNKALLFCSPHNPVGRVWKKDE 185 (394)
T ss_dssp CTTCEEEECSSCCTHHH--HHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC---TTEEEEEEESSBTTTTBCCCHHH
T ss_pred ccccccccccCcccchh--hHHhhhhhcccccccccccccccchhhhhhhhhcc---ccceEEEecccccccceeccHHH
Confidence 99999999999877654 4566778887777653 2345788888888764 57899999999999999997
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeeccCceee----c-----cccccceEEEecCCCcccCCCc--ceeeeeCHHH-HHHhc
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSSICAIDF----R-----MDEWGIDVALTGSQKALSLPTG--MGIVCASPKA-LEASK 223 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~----~-----~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~-~~~~~ 223 (367)
+++|.++|++ ++++||+|++|.....+. . .......+++.|++|.++ .+| +|+++++++. .+.+.
T Consensus 186 l~~l~~~a~~--~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~G~R~g~~~~~~~~i~~~~~ 262 (394)
T d1c7na_ 186 LQKIKDIVLK--SDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFN-IAGMGMSNIIIKNPDIRERFT 262 (394)
T ss_dssp HHHHHHHHHH--SSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHT-CGGGCCEEEECCCHHHHHHHH
T ss_pred hhhhhccccc--cceeEeccccccccccCCccccchhhhhcccccceeeccccccccc-ccccccccccccChhhhhhhh
Confidence 5567888888 999999999987543211 0 011135688899999984 444 5777766544 44333
Q ss_pred cCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCC
Q 017726 224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKE 301 (367)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~ 301 (367)
... .... ..+.+.....+.........+. .++..+.+.++.+.+.+.++.. ++.+..+
T Consensus 263 ~~~---------------~~~~--~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p-- 322 (394)
T d1c7na_ 263 KSR---------------DATS--GMPFTTLGYKACEICYKECGKW-LDGCIKVIDKNQRIVKDFFEVNHPEIKAPLI-- 322 (394)
T ss_dssp HHH---------------HHTT--CCCCCHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHCTTSBCCCC--
T ss_pred hhh---------------hhcc--ccccccccchhhhhhhcchhhh-hcccccccchhhhhhhhhhhccccceeecCC--
Confidence 210 0010 1122332222222222221222 5677777888888888888875 5665555
Q ss_pred ccCCCceEEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeec
Q 017726 302 EWFSDTVTAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHL 351 (367)
Q Consensus 302 ~~~~~~~~~~~~~~-~~~~~~l~~~L~~~~gv~v~~g~~~--~~~~~iRi~~~ 351 (367)
.+++++|++++. +.+..+++++|.+++||.+.||..+ ...+++||++.
T Consensus 323 --~g~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~ 373 (394)
T d1c7na_ 323 --EGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLA 373 (394)
T ss_dssp --SBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECC
T ss_pred --CceeEEEEECCCCCCCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEe
Confidence 456678888864 6789999999988889999998543 33568999964
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=2e-28 Score=219.41 Aligned_cols=283 Identities=15% Similarity=0.107 Sum_probs=201.0
Q ss_pred HHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCe-EEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCH
Q 017726 45 KTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR-IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKL 123 (367)
Q Consensus 45 ~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~-vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~ 123 (367)
.++|+++++++|++++ +|++|+|+++++..++.+++.|||. |+++.|.|..+ ...++..|.+++.++.++++.+|+
T Consensus 59 ~~Lr~~ia~~~gv~pe-~I~it~Gs~eai~~~~~~~~~pgd~~Vl~~~P~y~~~--~~~~~~~g~~v~~~~~~~~~~~d~ 135 (354)
T d1fg7a_ 59 KAVIENYAQYAGVKPE-QVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMY--SVSAETIGVECRTVPTLDNWQLDL 135 (354)
T ss_dssp HHHHHHHHHHHTSCGG-GEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHH--HHHHHHHTCEEEECCCCTTSCCCH
T ss_pred HHHHHHHHHHhCCChH-HeeeccCchHHHHHHHHHhhccccccccccccccccc--hhhhhccCceeeccccccccccch
Confidence 5899999999999875 4999999999999999999999985 77777766554 355778899999999988889999
Q ss_pred HHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCcee----eccccccceEEEecC
Q 017726 124 DVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID----FRMDEWGIDVALTGS 199 (367)
Q Consensus 124 e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~----~~~~~~~~d~~~~s~ 199 (367)
++++.++. ++++|++++||||||.+++.+.+..++...+++.++++|+++.-.... .........+++.|+
T Consensus 136 ~~l~~~~~-----~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~~~~~~~~~~~~~~iv~~S~ 210 (354)
T d1fg7a_ 136 QGISDKLD-----GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTL 210 (354)
T ss_dssp HHHHTSCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEES
T ss_pred hhhhhccc-----ccceeeccCCCccceeEeeecccccccccccccccccccccchhhccccccchhhcccccceEEeCC
Confidence 99887653 679999999999999999876655555544467777777775433211 112223456888999
Q ss_pred CCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHH
Q 017726 200 QKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIER 277 (367)
Q Consensus 200 ~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~ 277 (367)
||.++ .+| +|++++++++++.+..... ++..+........+++..-.........++
T Consensus 211 SK~~~-laGlRiGy~i~~~~~i~~l~~~~~--------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 269 (354)
T d1fg7a_ 211 SKAFA-LAGLRCGFTLANEEVINLLMKVIA--------------------PYPLSTPVADIAAQALSPQGIVAMRERVAQ 269 (354)
T ss_dssp SSTTC-CGGGCCEEEEECHHHHHHHHHHSC--------------------SSCSCHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred ccccC-CCccccccccccchhhhhhhhhcC--------------------ccchhhHHHHHHHHHHhhhccccccccchh
Confidence 99984 444 6999999999988864321 223333222222222211111114455567
Q ss_pred HHHHHHHHHHHHHHcC-CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCC-CCCCcEEEEeecCCCC
Q 017726 278 HRRLGKATRLAVEAWG-LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLN-KVAGKVFRIGHLGHLN 355 (367)
Q Consensus 278 ~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~-~~~~~~iRi~~~~~~~ 355 (367)
+.+.++.+.+.|.+++ +....+ ..+++++++++ ++.++++.|.++ ||.++++.. +..++++||++ +..+
T Consensus 270 ~~~~r~~l~~~l~~~~~~~~~~p----~~~~f~~~~~~---~~~~~~~~L~~~-gIlvr~~~~~~~~~~~lRisi-gt~e 340 (354)
T d1fg7a_ 270 IIAEREYLIAALKEIPCVEQVFD----SETNYILARFK---ASSAVFKSLWDQ-GIILRDQNKQPSLSGCLRITV-GTRE 340 (354)
T ss_dssp HHHHHHHHHHHHHHSTTEEEECC----CSSSEEEEEET---THHHHHHHHHHT-TEECEECTTSTTCTTEEEEEC-CCHH
T ss_pred hhhHHHHHHHHHHhCCCcceeCC----CCceEEEEeCC---CHHHHHHHHHHC-CcEEecCCCCCCCCCEEEEEe-CCHH
Confidence 7888889999999984 443444 24457888885 578899999755 999997644 33457999995 6555
Q ss_pred HHHHHHhhhh
Q 017726 356 EVMFNFQLLF 365 (367)
Q Consensus 356 ~~~~~~~~l~ 365 (367)
+.+.+.++|+
T Consensus 341 e~~~~l~aLk 350 (354)
T d1fg7a_ 341 ESQRVIDALR 350 (354)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666777765
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.96 E-value=1.6e-28 Score=225.45 Aligned_cols=280 Identities=14% Similarity=0.118 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHHhc------CC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC
Q 017726 43 LTKTLLEDIKKIFK------TT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES 115 (367)
Q Consensus 43 ~~~~~~~~la~~~~------~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 115 (367)
+..++|+.|+++++ .+ ++++|++|+|+++++..++.+++++||.|+++.|.|.++.. .+....|++++.++.
T Consensus 84 G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~-~~~~~~g~~~v~v~~ 162 (428)
T d1iaya_ 84 GLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNR-DLRWRTGVQLIPIHC 162 (428)
T ss_dssp CCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHH-HTTTTTCCEEEEECC
T ss_pred chHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHH-HHHHhcCCeEEEeec
Confidence 45578888888764 22 34569999999999999999999999999999997766532 223345899999988
Q ss_pred CC--CCCCCHHHHHHHHhcc--CCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccCceee---
Q 017726 116 DW--GEGAKLDVLASKLAAD--TAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAIDF--- 185 (367)
Q Consensus 116 ~~--~~~~d~e~l~~~i~~~--~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~--- 185 (367)
+. ++.+|+++++.+++.. ..++++++++++||||||.+++ +++|.++|++ ||++||+|++|+.....-
T Consensus 163 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~--~~~~vI~De~Y~~~~~~~~~~ 240 (428)
T d1iaya_ 163 ESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQ--HNIHLVCDEIYAATVFDTPQF 240 (428)
T ss_dssp CTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHT--TTCEEEEECTTGGGCCSSSCC
T ss_pred ccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeecc--CcEEEEecccccccccCcccc
Confidence 74 3578888887665431 1267899999999999999987 6778888998 999999999987543210
Q ss_pred -c-----------cccccceEEEecCCCcccCCCc--ceeeeeCHH-HHHHhccCCCCceeechHHHHHHhhcCCccCCC
Q 017726 186 -R-----------MDEWGIDVALTGSQKALSLPTG--MGIVCASPK-ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT 250 (367)
Q Consensus 186 -~-----------~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (367)
+ .......+++.|+||.++ .+| +|+++..++ +.+.+.... . ...
T Consensus 241 ~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~-~~GlRiG~~~~~~~~l~~~~~~~~-----------------~---~~~ 299 (428)
T d1iaya_ 241 VSIAEILDEQEMTYCNKDLVHIVYSLSKDMG-LPGFRVGIIYSFNDDVVNCARKMS-----------------S---FGL 299 (428)
T ss_dssp CCHHHHHTSGGGTTSCTTSEEEEEESTTTSS-CGGGCEEEEEESCHHHHHHHHHHH-----------------T---TSC
T ss_pred cccccccchhhccccccceEEEEecCCCccc-CCCcccccccccccchhhhhhhhh-----------------c---ccc
Confidence 0 011134588999999884 444 699988554 444333210 0 111
Q ss_pred CcHHHHHHHHHHHH---HHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCC------CHHH
Q 017726 251 PSIQLLYGLRAALD---LIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI------NSSE 321 (367)
Q Consensus 251 ~~~~~~~al~~al~---~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 321 (367)
.+.....++.+.+. +..+. +++.++++.++++.+.+.|+..|+++..+ .+++++|++++... +..+
T Consensus 300 ~~~~~~~~~~a~l~~~~~~~~~-~~~~~~~l~~r~~~~~~~L~~~gi~~~~p----~gg~f~w~~l~~~~~~~~~~~~~~ 374 (428)
T d1iaya_ 300 VSTQTQYFLAAMLSDEKFVDNF-LRESAMRLGKRHKHFTNGLEVVGIKCLKN----NAGLFCWMDLRPLLRESTFDSEMS 374 (428)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTCCBCCC----SSSSEEEEECGGGCSSSSHHHHHH
T ss_pred cccccccchhhhhhhhcccccc-ccccccccchhHHHHHHHHHhCCCEEecC----CcceEEEEECccccccCCCCCHHH
Confidence 22222222222221 22222 66777888889999999999889988776 56778888885321 2346
Q ss_pred HHHHHHhhCCeEEccCCC--CCCCcEEEEeec
Q 017726 322 IVRRAWQRYNLSLGLGLN--KVAGKVFRIGHL 351 (367)
Q Consensus 322 l~~~L~~~~gv~v~~g~~--~~~~~~iRi~~~ 351 (367)
++++|.+++||.+.||.. ...+++|||++.
T Consensus 375 l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a 406 (428)
T d1iaya_ 375 LWRVIINDVKLNVSPGSSFECQEPGWFRVCFA 406 (428)
T ss_dssp HHHHHHHTSCEECEEGGGGTCSSSSEEEEECS
T ss_pred HHHHHHHhCCEEEEcchhcCCCCCCEEEEEeC
Confidence 889998888999999854 344678999964
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=9.3e-29 Score=226.44 Aligned_cols=318 Identities=13% Similarity=0.045 Sum_probs=218.9
Q ss_pred CCChHHHHHHHccCCCCC---CCCcHHHHHHHHHHHHHHHh----cCCC--CceEEecCChhHHHHHHHHccCCCCCeEE
Q 017726 18 VHIPDQVIRAMNRNNEDY---RSPAVPALTKTLLEDIKKIF----KTTS--GTPFLIPTTGTGAWESALTNTLSPGDRII 88 (367)
Q Consensus 18 ~~~~~~v~~a~~~~~~~~---~~~~~~~~~~~~~~~la~~~----~~~~--~~~v~~~~ggt~al~~~~~~~~~~gd~vl 88 (367)
.++|+.+.+++.+..... ..|....+..++|+.+++++ |.+- +++|++|+|+++++..++.+++.+||.|+
T Consensus 37 ~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~g~~vl 116 (418)
T d1w7la_ 37 FPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVI 116 (418)
T ss_dssp SCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEE
T ss_pred CCCCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhhccCCceee
Confidence 356788888887754321 13433444556777777665 5552 35699999999999999999999999999
Q ss_pred EEeCCcchHHHHHHHHHhCCceEEEeCCC------------CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc-
Q 017726 89 SFLIGQFSLLWIDQQQRLNFNVDVVESDW------------GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN- 155 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~------------~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~- 155 (367)
+++|.++.+. ..+...|.+++.++... ++.+|.+++..... ++++++++++||||||.+++
T Consensus 117 v~~p~~~~y~--~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~i~~~~p~NPtG~~~s~ 190 (418)
T d1w7la_ 117 IIEPFFDCYE--PMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT----SRTKALVLNTPNNPLGKVFSR 190 (418)
T ss_dssp EEESCCTTHH--HHHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCH
T ss_pred ccccccchhH--HHHHHcCCEeeccccccccccccccccccCcccchhhhhcccc----ccccceeccCcCCcccccccH
Confidence 9999777653 55777899888877542 23456666666655 57799999999999999986
Q ss_pred --HHHHHHHHHhcCCCcEEEEeeeeccCcee----e---cccc-ccceEEEecCCCcccCC-CcceeeeeCHHHHHHhcc
Q 017726 156 --LSKVRKLLDEYRHPALFLVDGVSSICAID----F---RMDE-WGIDVALTGSQKALSLP-TGMGIVCASPKALEASKT 224 (367)
Q Consensus 156 --~~~i~~~~~~~~~~~~vi~D~~~~~~~~~----~---~~~~-~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~~ 224 (367)
+++|.++|++ ++++||+|++|...... . .... ....+++.|++|.++.| .++|++++++++++++..
T Consensus 191 ~~~~~i~~~a~~--~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~RvG~~v~~~~~~~~l~~ 268 (418)
T d1w7la_ 191 EELELVASLCQQ--HDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRT 268 (418)
T ss_dssp HHHHHHHHHHHH--HTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCCCcccccccchhhhhhhcc
Confidence 5678888888 99999999998654321 1 1111 23578999999987532 447999999998877764
Q ss_pred CCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHH---h---ChHHHHHHHHHHHHHHHHHHHHcCCcccc
Q 017726 225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFE---E---GLENVIERHRRLGKATRLAVEAWGLKNCT 298 (367)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~---~---g~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 298 (367)
... .. ...++.....++..++..... . -+...++.++++++.+.+.|++.|+.+..
T Consensus 269 ~~~---------------~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~ 330 (418)
T d1w7la_ 269 VHQ---------------NS---VFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPLI 330 (418)
T ss_dssp HHH---------------TT---TSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred ccc---------------cc---cccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhcCCcccC
Confidence 211 01 112333333333334433221 1 15677888899999999999999998887
Q ss_pred CCCccCCCceEEEEcCC-------------CCCHHHHHHHHHhhCCeEEccCCCCC-------CCcEEEEeecCCCCHHH
Q 017726 299 QKEEWFSDTVTAVIVPS-------------HINSSEIVRRAWQRYNLSLGLGLNKV-------AGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 299 ~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~L~~~~gv~v~~g~~~~-------~~~~iRi~~~~~~~~~~ 358 (367)
| .+++++|+++++ ..+..+++++|++++||.+.||..+. ..++||||+....+..+
T Consensus 331 P----~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~~~~~~l~ 406 (418)
T d1w7la_ 331 P----QGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQ 406 (418)
T ss_dssp C----SBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHHH
T ss_pred C----CceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEEEcCCHHHHH
Confidence 7 567778887631 12356899998888899999985432 24689999754333334
Q ss_pred HHHhhhh
Q 017726 359 FNFQLLF 365 (367)
Q Consensus 359 ~~~~~l~ 365 (367)
...+.|+
T Consensus 407 ~a~~rl~ 413 (418)
T d1w7la_ 407 AMDEKLR 413 (418)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.96 E-value=4.3e-28 Score=222.79 Aligned_cols=281 Identities=14% Similarity=0.102 Sum_probs=198.7
Q ss_pred HHHHHHHHHHHHhc------CC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC
Q 017726 43 LTKTLLEDIKKIFK------TT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES 115 (367)
Q Consensus 43 ~~~~~~~~la~~~~------~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 115 (367)
+..++|+.++++++ .+ ++++|++|+|+++++..++.++++|||.|+++.|.|+.+.. .+....|++++.+++
T Consensus 85 G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~-~~~~~~g~~~v~v~~ 163 (431)
T d1m7ya_ 85 GLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDR-DLKWRTGVEIVPIHC 163 (431)
T ss_dssp CCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH-HTTTTTCCEEEEEEC
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHH-HHHHhcCceeccccc
Confidence 35578888877764 22 34569999999999999999999999999999998766532 222346889999988
Q ss_pred CCC--CCCCHHHHHHHHhcc--CCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccCcee----
Q 017726 116 DWG--EGAKLDVLASKLAAD--TAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAID---- 184 (367)
Q Consensus 116 ~~~--~~~d~e~l~~~i~~~--~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~---- 184 (367)
+.+ +.+|++.+++++.+. ...+++++++++||||||.+++ +++|.++|++ ++++||+|++|+.....
T Consensus 164 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~--~~~~vI~De~Y~~~~~~~~~~ 241 (431)
T d1m7ya_ 164 TSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVED--KGIHLISDEIYSGTAFSSPSF 241 (431)
T ss_dssp CGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--HTCEEEEECTTGGGCCSSSCC
T ss_pred cchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccc--cCcceeecccccccccCCCCC
Confidence 754 568899988887652 1157899999999999999987 6678888888 99999999998753321
Q ss_pred ecc-------------ccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCC
Q 017726 185 FRM-------------DEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPY 249 (367)
Q Consensus 185 ~~~-------------~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (367)
.+. ...+..+++.|+||.++ .+| +|+++.+++.+....... ... .
T Consensus 242 ~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~-~~G~RiG~~~~~~~~i~~~~~~~---------------~~~---~- 301 (431)
T d1m7ya_ 242 ISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLG-LPGFRVGAIYSNDDMVVAAATKM---------------SSF---G- 301 (431)
T ss_dssp CCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSC-CGGGCEEEEEESCHHHHHHHHHH---------------GGG---S-
T ss_pred CCHHHHhhhcccccccccCceEEEEecCccccc-CCCCccceeccchhhhHHHHHHH---------------hcc---c-
Confidence 000 11134588999999985 444 699999888765443210 000 1
Q ss_pred CCcHHHHHHHHHHHH---HHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCC------CHH
Q 017726 250 TPSIQLLYGLRAALD---LIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI------NSS 320 (367)
Q Consensus 250 ~~~~~~~~al~~al~---~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 320 (367)
..+.....++.+.+. ...+. +++.++++.++++.+.+.|++.|+++..+ .++.++|++++... +..
T Consensus 302 ~~~~~~~~~~~a~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~gi~~~~p----~gg~f~w~~l~~~~~~~~~~~~~ 376 (431)
T d1m7ya_ 302 LVSSQTQHLLSAMLSDKKLTKNY-IAENHKRLKQRQKKLVSGLQKSGISCLNG----NAGLFCWVDMRHLLRSNTFEAEM 376 (431)
T ss_dssp CCCHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTTCEECCC----CSSSEEEEECGGGSSSSSHHHHH
T ss_pred cccccccchhhhhhccchhhhhh-hhhhhhhhhhhhhhhhhhhhcCCcEEecC----CceeEEEEECccccccCcccCHH
Confidence 122222222222222 22222 67778888999999999999889999877 56778888885322 344
Q ss_pred HHHHHHHhhCCeEEccCCC--CCCCcEEEEeec
Q 017726 321 EIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHL 351 (367)
Q Consensus 321 ~l~~~L~~~~gv~v~~g~~--~~~~~~iRi~~~ 351 (367)
+++++|.+++||.+.||.. ...+++|||++.
T Consensus 377 ~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a 409 (431)
T d1m7ya_ 377 ELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFA 409 (431)
T ss_dssp HHHHHHHHTSCEECEEGGGGTCSSTTEEEEECS
T ss_pred HHHHHHHHHCCEEEEeccccCCCCCCEEEEEeC
Confidence 7889998888999999854 334678999964
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.96 E-value=4.2e-28 Score=220.24 Aligned_cols=309 Identities=17% Similarity=0.123 Sum_probs=212.5
Q ss_pred cccccCCCC--CChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCC
Q 017726 10 NHLFVPGPV--HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLS 82 (367)
Q Consensus 10 ~~~~~~~p~--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~ 82 (367)
.+.+..|-+ ++|+.+.+++.+......+|....+..++|+.+++++ |.+ .+++|++|+|+++++..++.+++.
T Consensus 30 vi~l~~G~p~~~~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~~ 109 (389)
T d2gb3a1 30 IHHLNIGQPDLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIAN 109 (389)
T ss_dssp EEECSSCCCCSCCCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCC
T ss_pred EEECCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEeccccccccccccccccc
Confidence 355555443 5688899999886544444544455678888888776 433 345699999999999999999999
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCC-CCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HHH
Q 017726 83 PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGE-GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSK 158 (367)
Q Consensus 83 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~ 158 (367)
+||.|+++.|.|+... ..++..|..+..++.+.++ ..+.+.+...+. ++++++++++|+||||.+++ +++
T Consensus 110 ~gd~V~i~~P~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~nP~NPtG~~~s~~~~~~ 183 (389)
T d2gb3a1 110 PGDEILVLEPFYANYN--AFAKIAGVKLIPVTRRMEEGFAIPQNLESFIN----ERTKGIVLSNPCNPTGVVYGKDEMRY 183 (389)
T ss_dssp TTCEEEEEESCCTHHH--HHHHHHTCEEEEEECCGGGTSCCCTTGGGGCC----TTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred CCCeEEEeCCCCcccc--ccccccCccccccccccccccchhhhhhhhcc----cCccEEEeCCCCccccccchHHHHHH
Confidence 9999999999777643 5577789999999887544 334444444444 57899999999999999986 677
Q ss_pred HHHHHHhcCCCcEEEEeeeeccCceeec-----cccccceEEEecCCCcccCCCc--ceeeeeCHHHHHHhccCCCCcee
Q 017726 159 VRKLLDEYRHPALFLVDGVSSICAIDFR-----MDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVF 231 (367)
Q Consensus 159 i~~~~~~~~~~~~vi~D~~~~~~~~~~~-----~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~ 231 (367)
|.++|++ ++++||+|++|......-. .......+++.|++|.+. .+| +|+++++++.+......
T Consensus 184 i~~~a~~--~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~-~~GlRiG~~~~~~~~i~~~~~~------ 254 (389)
T d2gb3a1 184 LVEIAER--HGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFS-ACGARVGCLITRNEELISHAMK------ 254 (389)
T ss_dssp HHHHHHH--TTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTT-CGGGCCEEEECSCHHHHHHHHH------
T ss_pred HHhhccc--CCEEEEEecccccccccccccccccccccccccccccccccc-CcccceeeeeccchhHHHHHhh------
Confidence 8888888 9999999999875433211 111235678888888885 444 69998876654333211
Q ss_pred echHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCC-ccccCCCccCCCceEE
Q 017726 232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGL-KNCTQKEEWFSDTVTA 310 (367)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~~~~~~ 310 (367)
...+ .+.++.....+...++....+ -+++.+++++++++.+.+.|+++|+ .+..+ .+++++|
T Consensus 255 ---------~~~~---~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p----~~g~~~~ 317 (389)
T d2gb3a1 255 ---------LAQG---RLAPPLLEQIGSVGLLNLDDS-FFDFVRETYRERVETVLKKLEEHGLKRFTKP----SGAFYIT 317 (389)
T ss_dssp ---------HHHH---SCCCCHHHHHHHHHHHTCCHH-HHHHHHHHHHHHHHHHHHHHHHTTCCCBCCC----SBSSEEE
T ss_pred ---------hhhc---cccccccccccccccccccch-hcccccccccccchhhhhhhhhhccccccCC----CceEEEE
Confidence 0101 223444333333333322212 2677888999999999999999964 34444 4567888
Q ss_pred EEcCCCCCHHHHHHHHHhh-----CCeEEccCCCC--C---CCcEEEEeec
Q 017726 311 VIVPSHINSSEIVRRAWQR-----YNLSLGLGLNK--V---AGKVFRIGHL 351 (367)
Q Consensus 311 ~~~~~~~~~~~l~~~L~~~-----~gv~v~~g~~~--~---~~~~iRi~~~ 351 (367)
+++| ..+..+++++|.++ .||.+.||... . ..+++||++.
T Consensus 318 ~~lp-~~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~ 367 (389)
T d2gb3a1 318 AELP-VEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV 367 (389)
T ss_dssp EECS-SSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC
T ss_pred EeCC-CCCHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEc
Confidence 9985 45788999998765 36777776432 1 2467999974
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.96 E-value=4.5e-28 Score=217.26 Aligned_cols=315 Identities=13% Similarity=0.059 Sum_probs=213.6
Q ss_pred CCCCcccccCC--CCCChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCC
Q 017726 6 APGKNHLFVPG--PVHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS 82 (367)
Q Consensus 6 ~~~~~~~~~~~--p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~ 82 (367)
+|...+.++-| |.++|+.+++++.+.... ++++. ....++|+.+++++++++. +|++++|+++++..++..+.
T Consensus 20 ~p~~~idls~~~np~~~p~~~~~a~~~~~~~~~~Yp~--~~~~~Lr~aia~~~~v~~~-~I~~~~g~~~~~~~~~~~~~- 95 (355)
T d1lc5a_ 20 SPDQLLDFSANINPLGMPVSVKRALIDNLDCIERYPD--ADYFHLHQALARHHQVPAS-WILAGNGETESIFTVASGLK- 95 (355)
T ss_dssp CGGGSEECSSCCCTTCCCHHHHHHHHHTGGGGGSCCC--TTCHHHHHHHHHHHTSCGG-GEEEESSHHHHHHHHHHHHC-
T ss_pred ChhheEEccCCCCCCCCCHHHHHHHHHHHHHhccCCC--CChHHHHHHHHHHhCCCHH-HEEecccHHHHHHHHHhhhc-
Confidence 34455666654 677899999999986544 33333 2235899999999999875 48888888888887766543
Q ss_pred CCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc---HH
Q 017726 83 PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LS 157 (367)
Q Consensus 83 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~ 157 (367)
++.+++..|.+..+. ......+.++..++++.+ +.++ +.+++++. +++++|++++||||||.+++ +.
T Consensus 96 -~~~~~v~~p~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~----~~~~~v~l~nP~NPtG~~~~~e~l~ 167 (355)
T d1lc5a_ 96 -PRRAMIVTPGFAEYG--RALAQSGCEIRRWSLREADGWQLT-DAILEALT----PDLDCLFLCTPNNPTGLLPERPLLQ 167 (355)
T ss_dssp -CSEEEEEESCCTHHH--HHHHHTTCEEEEEECCGGGTTCCC-TTHHHHCC----TTCCEEEEESSCTTTCCCCCHHHHH
T ss_pred -cccccccCCccceec--cccccccccceeeeeeccCCccce-eeeeeccc----cccceeeeecccCcccccchhhhhh
Confidence 445556667555432 445667888888888643 3333 45566655 57899999999999999987 55
Q ss_pred HHHHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCCc--ceeeeeCHHHH-HHhccCCCCc
Q 017726 158 KVRKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPTG--MGIVCASPKAL-EASKTAKSVR 229 (367)
Q Consensus 158 ~i~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~~~-~~~~~~~~~~ 229 (367)
+|.++|++ +++++++|+++...... ......+..+++.|++|+++ .+| +|+++++++.+ +.+....
T Consensus 168 ~i~~~a~~--~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-l~GlR~G~~i~~~~~~~~~~~~~~--- 241 (355)
T d1lc5a_ 168 AIADRCKS--LNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYA-IPGLRLGYLVNSDDAAMARMRRQQ--- 241 (355)
T ss_dssp HHHHHHHH--HTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTT-CTTTCCEEEECCCHHHHHHHHHHS---
T ss_pred hhhhhccc--cccccccccceeeeeeecccccccccccccceeecccccccc-cccccccceeccchhhhHHHHhhc---
Confidence 67777788 99999999998643211 11122345699999999984 444 69999876654 3333211
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCce
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTV 308 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~ 308 (367)
. +++.+.....+..++++.. ..+.+.++++++..+++.+.|.++ ++++.++ .+++
T Consensus 242 --------------~---~~~~~~~~~~~a~~~l~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~-----~~~f 297 (355)
T d1lc5a_ 242 --------------M---PWSVNALAALAGEVALQDS--AWQQATWHWLREEGARFYQALCQLPLLTVYPG-----RANY 297 (355)
T ss_dssp --------------C---TTCSCHHHHHHHHHGGGCH--HHHHHHHHHHHHHHHHHHHHHHTSTTEEECCC-----SSSE
T ss_pred --------------C---Ccccccccccccccccccc--chhHHHHHHHHHHHHHHHHHHhhcCCcEECCC-----CCEE
Confidence 1 2344544333333343321 125667788888999999999998 7776543 3456
Q ss_pred EEEEcCCCCCHHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 309 TAVIVPSHINSSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 309 ~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~--~~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
++++++. +..++++.|.++ ||.++++.. ...++++||++ +..++.+.+.++|++
T Consensus 298 ~~~~~~~--~~~~~~~~L~~~-gv~vr~~~~f~~~~~~~iRis~-~~~~e~~~li~aL~~ 353 (355)
T d1lc5a_ 298 LLLRCER--EDIDLQRRLLTQ-RILIRSCANYPGLDSRYYRVAI-RSAAQNERLLAALRN 353 (355)
T ss_dssp EEEEESC--TTCCHHHHHHTT-TEECEECTTSTTCCTTEEEEEC-CCHHHHHHHHHHHHH
T ss_pred EEEECCC--CHHHHHHHHHHC-CcEEEeCccCCCCCCCEEEEEe-CCHHHHHHHHHHHHH
Confidence 7888853 567899999755 999998743 33467899995 555556677777765
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.96 E-value=4.6e-28 Score=222.13 Aligned_cols=282 Identities=16% Similarity=0.107 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHHh----cCC--CCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC
Q 017726 42 ALTKTLLEDIKKIF----KTT--SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES 115 (367)
Q Consensus 42 ~~~~~~~~~la~~~----~~~--~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 115 (367)
.+..++|+.|++++ |.+ ++++|++|+|+++++..++.+++.+||.|++++|.|+.+. ..++..|.++..++.
T Consensus 80 ~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~--~~~~~~g~~~~~~~~ 157 (420)
T d1vp4a_ 80 EGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAI--NAFRQYLANFVVVPL 157 (420)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHH--HHHHTTTCEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhhccccccccccccccchh--HHHHHHhhhcccccc
Confidence 44456666666654 543 4567999999999999999999999999999999777643 557888999999998
Q ss_pred CCCCCCCHHHHHHHHhcc-----CCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccCceee--
Q 017726 116 DWGEGAKLDVLASKLAAD-----TAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAIDF-- 185 (367)
Q Consensus 116 ~~~~~~d~e~l~~~i~~~-----~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~-- 185 (367)
+++ .+|++.++..+.+. ....++++++++|+||||.+++ +++|.++|++ +++++|+|++|......-
T Consensus 158 ~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~--~~i~ii~De~y~~l~~~~~~ 234 (420)
T d1vp4a_ 158 EDD-GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEK--YDLFIVEDDPYGALRYEGET 234 (420)
T ss_dssp ETT-EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHH--TTCEEEEECSSTTCBCSSCC
T ss_pred ccc-ccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhc--ccccccccchhhhccccCcc
Confidence 754 46788776654431 1023446678899999999986 6778899999 999999999987543211
Q ss_pred -----ccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHH
Q 017726 186 -----RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLR 260 (367)
Q Consensus 186 -----~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 260 (367)
.....+..+++++++|++....++|++++++++++.+.... .... ..++...+ .+..
T Consensus 235 ~~~~~~~~~~~~~i~~~s~sk~~~~G~RiG~~~~~~~~i~~l~~~~------------~~~~-----~~~~~~~q-~~~a 296 (420)
T d1vp4a_ 235 VDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAGSKEFIRKIVQAK------------QSAD-----LCSPAITH-RLAA 296 (420)
T ss_dssp CCCHHHHHCTTTEEEEEESTTTTCGGGCEEEEECCHHHHHHHHHHH------------HHHH-----SSCCHHHH-HHHH
T ss_pred cccccccccccceeEEeccccccccccccccccccchhhhhhhhhh------------hhcc-----ccCchhhh-hhhh
Confidence 11123456788888888754455799999999988776421 0111 11233322 2222
Q ss_pred HHHHHH-HHhChHHHHHHHHHHHHHHHHHHHHc-----CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEE
Q 017726 261 AALDLI-FEEGLENVIERHRRLGKATRLAVEAW-----GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSL 334 (367)
Q Consensus 261 ~al~~~-~~~g~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v 334 (367)
..+... ....+++.++.+++..+.+.+.|++. |+++..| .+++++|++++++.+..++++.|.++ ||.+
T Consensus 297 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p----~gg~f~~~~~~~~~d~~~~~~~l~~~-gV~v 371 (420)
T d1vp4a_ 297 RYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKS----EGGLFIWLTLPEGFDTWEMFEYAKRK-KVFY 371 (420)
T ss_dssp HHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCC----SBSSEEEEECCTTCCTTTTHHHHHHH-TEEC
T ss_pred hhcccccccccchhHHHHhhhhcccchhhhhhhhccCCCcEEecC----CceEEEEEECCCCCCHHHHHHHHHHC-CeEE
Confidence 222211 01115566777788888888888774 5667666 46778899998888888999988655 9999
Q ss_pred ccCCCCC----CCcEEEEeec
Q 017726 335 GLGLNKV----AGKVFRIGHL 351 (367)
Q Consensus 335 ~~g~~~~----~~~~iRi~~~ 351 (367)
.||..+. ..+++|||+.
T Consensus 372 ~PG~~F~~~~~~~~~iRls~~ 392 (420)
T d1vp4a_ 372 VPGRVFKVYDEPSPSMRLSFC 392 (420)
T ss_dssp EEGGGGCTTCCCCSEEEEECS
T ss_pred EechhhCCCCCCCCEEEEEeC
Confidence 9985432 2468999963
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.96 E-value=9.4e-28 Score=218.93 Aligned_cols=286 Identities=16% Similarity=0.111 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCC
Q 017726 42 ALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESD 116 (367)
Q Consensus 42 ~~~~~~~~~la~~~----~~~-~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 116 (367)
.+..++|+.+++++ |.+ .+++|++|+|+++++..++.+++++||.|++++|.|+.+. ..++..|.++..++.+
T Consensus 71 ~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~--~~~~~~g~~~~~v~~~ 148 (403)
T d1wsta1 71 KGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAI--QAFKYYDPEFISIPLD 148 (403)
T ss_dssp SCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHH--HHHHTTCCEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHhhcCCccccCCCcchhhh--HHHhhccccceeEeec
Confidence 44557777777775 443 3456999999999999999999999999999999877653 5578899999999987
Q ss_pred CCCCC--CHHH-HHHHHhccCCCCccEEEEEecCCCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccCcee------
Q 017726 117 WGEGA--KLDV-LASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAID------ 184 (367)
Q Consensus 117 ~~~~~--d~e~-l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~------ 184 (367)
.++.- ..+. .+......+ +.+.++++++|+||||.+++ +++|.++|++ ||++||+|++|......
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~--~~~~li~De~y~~l~~~~~~~~~ 225 (403)
T d1wsta1 149 DKGMRVDLLEEKLEELRKQGK-RVKIVYTVSTFQNPAGVTMSVDRRKKLLELANE--YDFLIVEDGPYSELRYSGEPTPP 225 (403)
T ss_dssp TTEECHHHHHHHHHHHHHTTC-CCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHH--TTCEEEEECTTTTCBCSSCCCCC
T ss_pred ccCCccccccccchhhhhccc-cccccccccccCCCCCccCCHHHHHHHHHHHHh--cCceeccccchhheecCCCCCCc
Confidence 54421 1122 222222222 45567888999999999997 4568888899 99999999998643221
Q ss_pred e-ccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHH
Q 017726 185 F-RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAAL 263 (367)
Q Consensus 185 ~-~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al 263 (367)
+ .....+..+++.|++|+++...++|+++.++++++.+..... .... .++.....+..+.+
T Consensus 226 ~~~~~~~~~~i~~~S~SK~~~~G~RiG~~i~~~~~i~~~~~~~~-------------~~~~-----~~~~~~~~~~~~~~ 287 (403)
T d1wsta1 226 IKHFDDYGRVIYLGTFSKILAPGFRIGWVAAHPHLIRKMEIAKQ-------------SIDL-----CTNTFGQAIAWKYV 287 (403)
T ss_dssp GGGGCSSSCEEEEEESTTTTCGGGCCEEEEECHHHHHHHHHHHH-------------HHHS-----SCCHHHHHHHHHHH
T ss_pred ccccCCCCcEEEEccccceecCcccccccccchHHHHHHHHHHh-------------hhcc-----ccccchhhhHHhhh
Confidence 1 122335679999999998534557999999999877653210 0001 13332222222222
Q ss_pred HH-HHHhChHHHHHHHHHHHHHHHHHHHHc---CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCC
Q 017726 264 DL-IFEEGLENVIERHRRLGKATRLAVEAW---GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLN 339 (367)
Q Consensus 264 ~~-~~~~g~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~ 339 (367)
.. ..+..+++.++.+..+++.+.+.|.+. |+.+..| .+++++++++|++.+.+.+++.|.++ ||.+.||..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p----~gg~~~~~~~~~~~~~~~~~~~l~~~-gV~v~pg~~ 362 (403)
T d1wsta1 288 ENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKP----EGGMFVRVTLPEGIDTKLMMERAVAK-GVAYVPGEA 362 (403)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCC----SBSSEEEEECCTTCCTTTTHHHHHHT-TEECEEGGG
T ss_pred hccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEEeCC----CceeEEEEECCCCCCHHHHHHHHHHC-CEEEEechh
Confidence 22 112226778888889999999999885 5666666 46778899998888888999998755 999998843
Q ss_pred C----CCCcEEEEeecCCCCH
Q 017726 340 K----VAGKVFRIGHLGHLNE 356 (367)
Q Consensus 340 ~----~~~~~iRi~~~~~~~~ 356 (367)
+ ...+++||++ +..++
T Consensus 363 f~~~~~~~~~iRi~~-~~~~~ 382 (403)
T d1wsta1 363 FFVHRDKKNTMRLNF-TYVPE 382 (403)
T ss_dssp GSTTCCCCSEEEEEC-SSSCH
T ss_pred hcCCCCCCCEEEEEe-cCCCH
Confidence 2 2346899996 43343
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.96 E-value=2e-27 Score=211.08 Aligned_cols=296 Identities=15% Similarity=0.081 Sum_probs=209.5
Q ss_pred CCCCChHHHHHHHccCCCC---CCCCcHHHHHHHHHHHHHHHhcCC--CCceEEecCChhHHHHHHHHccCCCCCeEEEE
Q 017726 16 GPVHIPDQVIRAMNRNNED---YRSPAVPALTKTLLEDIKKIFKTT--SGTPFLIPTTGTGAWESALTNTLSPGDRIISF 90 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~--~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~ 90 (367)
.|.++|+.+.+++.+.... ++++. ....++|+.++++++.. ++++|++|+|+++++..+++. +|+|++.
T Consensus 29 np~~~p~~i~~~~~~~~~~~~~~~yp~--~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l~~l~~~----~d~v~i~ 102 (334)
T d2f8ja1 29 NPFPFPEDLVDEVFRRLNSDALRIYYD--SPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLM----FDRSVFF 102 (334)
T ss_dssp CSSCCCHHHHHHHHHHCCTTGGGSCCC--SSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHHHHHHHH----SSEEEEC
T ss_pred CCCCCCHHHHHHHHHHhhcchhcCCCC--CCcHHHHHHHHHHhcccCCCcceEEecCcchhHHHHHhhh----ccccccc
Confidence 4667888888888775443 22233 34578999999999754 445699999999999887654 6899999
Q ss_pred eCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCc
Q 017726 91 LIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPA 170 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~ 170 (367)
+|.|+.+. ..++..|++++.++.++++..+. ... ++++++++++|+||||.+++.+.+.++++ +++
T Consensus 103 ~P~y~~~~--~~~~~~g~~~v~v~~~~~~~~~~-----~~~----~~~~~l~l~nP~NPtG~~~s~~~l~~~~~---~~~ 168 (334)
T d2f8ja1 103 PPTYSCYR--IFAKAVGAKFLEVPLTKDLRIPE-----VNV----GEGDVVFIPNPNNPTGHVFEREEIERILK---TGA 168 (334)
T ss_dssp SSCCHHHH--HHHHHHTCCEEECCCCTTSCCCC-----CCC----CTTEEEEEESSCTTTCCCCCHHHHHHHHT---TTC
T ss_pred cccccccc--cchhccCCccccccccccccccc-----ccc----ccceEEEecccccccceeecHHHhhcccc---cee
Confidence 99776643 55778899999999987664431 111 46799999999999999999988887754 688
Q ss_pred EEEEeeeeccCcee---eccccccceEEEecCCCcccCC-CcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCc
Q 017726 171 LFLVDGVSSICAID---FRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTF 246 (367)
Q Consensus 171 ~vi~D~~~~~~~~~---~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (367)
++++|+++...... ......+..+++.|++|+++.+ .++|++++++++++++.....
T Consensus 169 ~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~i~~l~~~~~------------------- 229 (334)
T d2f8ja1 169 FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRL------------------- 229 (334)
T ss_dssp EEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSCTTTCEEEEEECHHHHHHHHHHSC-------------------
T ss_pred EEeecccchhhcccccccccccCceEEEEecCccccchhhhhhhhcccchHHHHHHHHhhc-------------------
Confidence 99999876432211 1222234569999999998522 347999999999988865321
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHHH
Q 017726 247 WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRA 326 (367)
Q Consensus 247 ~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 326 (367)
.+..+.....+..+.+.. .+.+++.++.+.++++.+.+.|+++|+++..+ .++ +++++++. .+.+++.+.|
T Consensus 230 -~~~~s~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~----~g~-f~~~~~~~-~~~~~~~~~L 300 (334)
T d2f8ja1 230 -PFNVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREMGYRITDS----RGN-FVFVFMEK-EEKERLLEHL 300 (334)
T ss_dssp -TTCSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHTCEECCC----CSS-EEEEECCH-HHHHHHHHHH
T ss_pred -ccccchhhhhhccccccc--ccchhhHHHHHHHHHHHHHHHHHHCCCeECCC----Cce-EEEEECCC-CCHHHHHHHH
Confidence 122333332333333322 11267778889999999999999999988765 343 67787753 4778899999
Q ss_pred HhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHHHhhhhc
Q 017726 327 WQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFNFQLLFQ 366 (367)
Q Consensus 327 ~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~l~~ 366 (367)
.++ ||.+++. .+++||++ +..++.+.+.++|++
T Consensus 301 ~~~-GI~vr~~-----~~~vRis~-g~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 301 RTK-NVAVRSF-----REGVRITI-GKREENDMILRELEV 333 (334)
T ss_dssp HHT-TEECEEE-----TTEEEEEC-CCHHHHHHHHHHHHH
T ss_pred HHC-CCEECCC-----CCeEEEEc-CCHHHHHHHHHHHhc
Confidence 755 9998752 36899995 555555666677664
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.5e-26 Score=211.97 Aligned_cols=327 Identities=9% Similarity=-0.055 Sum_probs=232.4
Q ss_pred CCCChHHHHHHHccCCCCCC-----CCcHHHHHHHHHHHHHHHhcCCCCc----eEEecCChhHHHHHHHHccC------
Q 017726 17 PVHIPDQVIRAMNRNNEDYR-----SPAVPALTKTLLEDIKKIFKTTSGT----PFLIPTTGTGAWESALTNTL------ 81 (367)
Q Consensus 17 p~~~~~~v~~a~~~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~~~~----~v~~~~ggt~al~~~~~~~~------ 81 (367)
.+..++.+.+.+.+..+.+. +|...++..++.+++++++|++..+ .-++|+|||+|+.+++.+..
T Consensus 63 ~t~~~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~ 142 (450)
T d1pmma_ 63 QTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKR 142 (450)
T ss_dssp CCCCCHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHH
Confidence 44556677777777544322 3445677888999999999987432 25899999999998775421
Q ss_pred ------CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccc
Q 017726 82 ------SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN 154 (367)
Q Consensus 82 ------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~ 154 (367)
.....++++...|++ |.++++.+|++++.|+.++ ++.+|++++++++++ +|.+|+.+.++|.||.+.
T Consensus 143 ~~~~g~~~~~~~~~~~~~H~s--~~Kaa~~~gi~~~~v~~~~~~~~~d~~~L~~~i~~----~t~~Vv~t~gtt~tG~~d 216 (450)
T d1pmma_ 143 MEAAGKPTDKPNLVCGPVQIC--WHKFARYWDVELREIPMRPGQLFMDPKRMIEACDE----NTIGVVPTFGVTYTGNYE 216 (450)
T ss_dssp HHHHTCCCSCCEEEESSCCHH--HHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCT----TEEEEECBBSCTTTCBBC
T ss_pred hhhcCCCCCCceEEecccHHH--HHHHHHHcCCCceEeeecCCCCcCcHHHHHHHhhh----CceEEEeeeeeccCCCcc
Confidence 122346666665554 6788999999999999876 589999999999984 669999999999999999
Q ss_pred cHHHHHHHHHh----cCCCcEEEEeeeeccCceeeccc-------cccceEEEecCCCcccCCCcceeeeeCHHHHHHhc
Q 017726 155 NLSKVRKLLDE----YRHPALFLVDGVSSICAIDFRMD-------EWGIDVALTGSQKALSLPTGMGIVCASPKALEASK 223 (367)
Q Consensus 155 ~~~~i~~~~~~----~~~~~~vi~D~~~~~~~~~~~~~-------~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~ 223 (367)
|+++|.++|+. +.+|+|+++|+|++.+..++... ..++|++.+|+|||+.+|.|+|+++.+++....-.
T Consensus 217 pv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~~ 296 (450)
T d1pmma_ 217 FPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQE 296 (450)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGG
T ss_pred ccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhcccceeEeecChhhccCCCCCeeEEEecChhhhhhh
Confidence 99888777632 23899999999998776554332 23699999999999999999999999866421111
Q ss_pred cCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc
Q 017726 224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE 302 (367)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 302 (367)
. .....+... ... .....++.+...+.++++++..+...|++++.++..+++++|.+.|++. +++++.+...
T Consensus 297 ~-~~~~~yl~~-----~~~-~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p 369 (450)
T d1pmma_ 297 L-VFNVDYLGG-----QIG-TFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRP 369 (450)
T ss_dssp G-CEEEEETTE-----EEE-ECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCT
T ss_pred c-ccccCcCCC-----CcC-CCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCC
Confidence 0 101111100 000 0112344555666788889999999999999999999999999999998 6888875433
Q ss_pred cCCCceEEEEcCC----CCCHHHHHHHHHhhCCeEEccC-CCCC--CCcEEEEeecCCCCHH
Q 017726 303 WFSDTVTAVIVPS----HINSSEIVRRAWQRYNLSLGLG-LNKV--AGKVFRIGHLGHLNEV 357 (367)
Q Consensus 303 ~~~~~~~~~~~~~----~~~~~~l~~~L~~~~gv~v~~g-~~~~--~~~~iRi~~~~~~~~~ 357 (367)
.....+++|++.+ +.+..++.+.|.++ |..+... ..+. ....+|+.+....+.+
T Consensus 370 ~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~-Gw~v~~~~~p~~~~~~~~lRvvv~~~~t~e 430 (450)
T d1pmma_ 370 DEGIPAVCFKLKDGEDPGYTLYDLSERLRLR-GWQVPAFTLGGEATDIVVMRIMCRRGFEMD 430 (450)
T ss_dssp TTBSSEEEEEECTTCCCSSCHHHHHHHHHTT-TCBCCEEECCTTCTTCEEEEEECCTTCCHH
T ss_pred CCceEEEEEecCCcccCCCCHHHHHHHHHHc-CCeeeccCcCCCcCCcEEEEEEccCCCCHH
Confidence 3445578898842 35677899999755 8665422 1111 2245999887766654
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=7.5e-26 Score=203.54 Aligned_cols=320 Identities=13% Similarity=0.096 Sum_probs=235.2
Q ss_pred CCCCCcccccCCCCCChHHHHHHHccCCCCCC----CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc
Q 017726 5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYR----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT 80 (367)
Q Consensus 5 ~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~ 80 (367)
+.-++.|+-...-+.+-+.+.+++.++..... .....+.+.++++.|++++|.+. .++.++|+.|+..++.++
T Consensus 42 ~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g~e~---al~~~SG~~an~~~i~al 118 (383)
T d1bs0a_ 42 NFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSR---ALLFISGFAANQAVIAAM 118 (383)
T ss_dssp ECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSE---EEEESCHHHHHHHHHHHH
T ss_pred EEEcccccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhcCCCc---eEEecccchhhHHHHHhh
Confidence 44455666555545566667777776644322 12345788999999999999764 577799999999999999
Q ss_pred CCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHH
Q 017726 81 LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVR 160 (367)
Q Consensus 81 ~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~ 160 (367)
..++|.|+.....|.+.. ..++..+.+++.++.+ |++++++.+.+.+ ++.++|+++.+.+++|.+.|+++|.
T Consensus 119 ~~~~d~v~~d~~~h~si~--~g~~~~~~~~~~~~hn-----d~~~le~~l~~~~-~~~~~vv~e~v~s~~G~i~pl~~l~ 190 (383)
T d1bs0a_ 119 MAKEDRIAADRLSHASLL--EAASLSPSQLRRFAHN-----DVTHLARLLASPC-PGQQMVVTEGVFSMDGDSAPLAEIQ 190 (383)
T ss_dssp CCTTCEEEEETTCCHHHH--HHHHTSSSEEEEECTT-----CHHHHHHHHHSCC-SSCEEEEEESBCTTTCCBCCHHHHH
T ss_pred cCCCceEEeeccccHHHh--hccccCCCcceEecch-----HHHHHHHHhcccC-CCceEEEecCCCCCCCcccchhHHH
Confidence 999998888777665542 4567788888887765 8999999998765 5678999999999999999999999
Q ss_pred HHHHhcCCCcEEEEeeeeccCceeecc------ccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeech
Q 017726 161 KLLDEYRHPALFLVDGVSSICAIDFRM------DEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDW 234 (367)
Q Consensus 161 ~~~~~~~~~~~vi~D~~~~~~~~~~~~------~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 234 (367)
++|++ +|+++++|++|+++.+.-.. .....++++.+++|.++ ..| |++.++.+.++.+..... .
T Consensus 191 ~l~~~--~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g-~~G-g~v~~~~~~~~~l~~~~~-~----- 260 (383)
T d1bs0a_ 191 QVTQQ--HNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFG-VSG-AAVLCSSTVADYLLQFAR-H----- 260 (383)
T ss_dssp HHHHH--TTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTS-SCC-EEEEECHHHHHHHHHHCH-H-----
T ss_pred HHHHh--cCcEEEeecceeeeecCCcccchHHHcCCcccccccccccccc-ccc-cccccchhHHHHHHhhch-h-----
Confidence 99999 99999999999988654321 12346788889999884 554 889999998887763211 0
Q ss_pred HHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcC
Q 017726 235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 314 (367)
+ .+....+...+.+..++++.+.....+..+++..++..++++.|++.|+.+... .+ .++.+.++
T Consensus 261 ------~----~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~~~----~s-~Ii~v~~g 325 (383)
T d1bs0a_ 261 ------L----IYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADS----CS-AIQPLIVG 325 (383)
T ss_dssp ------H----HSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECSC----CS-SBCCEEEE
T ss_pred ------h----hhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCccCCC----CC-CEEEEEEC
Confidence 0 012235555556777788877766567788889999999999999999877654 23 24445554
Q ss_pred CCCCHHHHHHHHHhhCCeEEccCCCCC---CCcEEEEeecCCCCHHHHHH
Q 017726 315 SHINSSEIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNEVMFNF 361 (367)
Q Consensus 315 ~~~~~~~l~~~L~~~~gv~v~~g~~~~---~~~~iRi~~~~~~~~~~~~~ 361 (367)
+...+.++.+.|+++ ||.+.+...|. ....+||+++..++++|++.
T Consensus 326 ~~~~a~~~~~~L~~~-Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~ 374 (383)
T d1bs0a_ 326 DNSRALQLAEKLRQQ-GCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDR 374 (383)
T ss_dssp SHHHHHHHHHHHHHT-TEECCEECTTSSCTTCEEECCBCCTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHC-CceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHH
Confidence 333456888999765 99998755432 23469999999888876653
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.95 E-value=2e-25 Score=199.66 Aligned_cols=327 Identities=14% Similarity=0.138 Sum_probs=238.6
Q ss_pred CCCCCcccccCCCCCChHHHHHHHccCCCCCC----CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc
Q 017726 5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYR----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT 80 (367)
Q Consensus 5 ~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~ 80 (367)
++-+|.|+-....+.+-+...+++.++..... -.+..+...++++.+++++|.+. .++.++|..|+..++.++
T Consensus 49 ~FsSndYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g~e~---all~~sG~~An~~~i~~l 125 (396)
T d2bwna1 49 VWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEA---ALVFSSAYNANDATLSTL 125 (396)
T ss_dssp ECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSE---EEEESCHHHHHHHHHHHH
T ss_pred EEEcccccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhCCCc---eeeeecchHHHHHHHHHH
Confidence 35567788777777777778888887655422 12345788899999999999865 456688999999988876
Q ss_pred --CCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHH
Q 017726 81 --LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSK 158 (367)
Q Consensus 81 --~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~ 158 (367)
..++|.|+.....|.+ +...++..+.+++.++.+ |.+++++++......+.++|++....+.+|.+.|+++
T Consensus 126 ~~~~~~d~i~~D~~~Has--i~~g~~ls~a~~~~f~Hn-----d~~~l~~l~~~~~~~~~~~iv~egvySmdGd~apl~~ 198 (396)
T d2bwna1 126 RVLFPGLIIYSDSLNHAS--MIEGIKRNAGPKRIFRHN-----DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKE 198 (396)
T ss_dssp HHHSTTCEEEEETTCCHH--HHHHHHHSCCCEEEECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHH
T ss_pred hcccCCCceeehhhhhhc--cchhhhccccCceEeecc-----hHHHhhhHHhhhcccCceeEEEEeeccCcccccccHh
Confidence 4577766655554444 335677889999888765 7888888877644356678899999999999999999
Q ss_pred HHHHHHhcCCCcEEEEeeeeccCceeecc--------ccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCce
Q 017726 159 VRKLLDEYRHPALFLVDGVSSICAIDFRM--------DEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV 230 (367)
Q Consensus 159 i~~~~~~~~~~~~vi~D~~~~~~~~~~~~--------~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~ 230 (367)
|.++|++ +|+++++|++|++|.+.-.. ....+|++++|++|.++ ..| |+++++++.++.+..... ++
T Consensus 199 l~~L~~~--y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g-~~G-g~v~~~~~~i~~l~~~~~-~~ 273 (396)
T d2bwna1 199 ICDIAEE--FGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYG-VFG-GYIAASARMVDAVRSYAP-GF 273 (396)
T ss_dssp HHHHHHH--HTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTC-SCC-EEEEECHHHHHHHHHHCH-HH
T ss_pred HHHHhhh--hcceeeeccceeeeeeccccccchhhcCCceeeeeeeeccccccc-ccc-cccchhHHHHHHHHhhcc-hh
Confidence 9999999 99999999999988753111 12247999999999994 565 899999999888764211 00
Q ss_pred eechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEE
Q 017726 231 FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTA 310 (367)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 310 (367)
. +...+++..+.+..++++.+.....++.+++.+.+.+++++.|.+.|+.+... ..+++.
T Consensus 274 i---------------fStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~~-----~spIvp 333 (396)
T d2bwna1 274 I---------------FSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDH-----GSHIVP 333 (396)
T ss_dssp H---------------TSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC-----SSSCEE
T ss_pred h---------------hcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCC-----CCCEEE
Confidence 0 12245666667777778776654345667888899999999999999888654 234677
Q ss_pred EEcCCCCCHHHHHHHHHhhCCeEEccCCCCC---CCcEEEEeecCCCCHHHHH--Hhhhhc
Q 017726 311 VIVPSHINSSEIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNEVMFN--FQLLFQ 366 (367)
Q Consensus 311 ~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~---~~~~iRi~~~~~~~~~~~~--~~~l~~ 366 (367)
+.+.+.....++.++|++++||.+.+...|. ....+||++...++.+|++ .++|++
T Consensus 334 v~ig~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~ 394 (396)
T d2bwna1 334 VVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDL 394 (396)
T ss_dssp EECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHH
Confidence 7775444556788887766699998765442 3356999999988876654 444443
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.94 E-value=2.8e-25 Score=202.03 Aligned_cols=324 Identities=10% Similarity=-0.016 Sum_probs=208.3
Q ss_pred CcccccCC-------CCCChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhcCC-----CCceEEecCC--hh--
Q 017726 9 KNHLFVPG-------PVHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTT-----SGTPFLIPTT--GT-- 70 (367)
Q Consensus 9 ~~~~~~~~-------p~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~-----~~~~v~~~~g--gt-- 70 (367)
+.++++.| .+++.+.|.++..+.... ..+|....+..++|+.+++++... .++.++.+.+ ++
T Consensus 29 ~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~ 108 (401)
T d7aata_ 29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGS 108 (401)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred CcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHH
Confidence 34666665 235567787776653221 224555577789999999987543 2233444433 22
Q ss_pred -HHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecC
Q 017726 71 -GAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNE 147 (367)
Q Consensus 71 -~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~ 147 (367)
.++..+++++++|||.|++++|.|+.+. ..++..|++++.+++.+ .+..+.+.+.+.+...+ ++++++++++||
T Consensus 109 ~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iii~~p~ 185 (401)
T d7aata_ 109 LRVGANFLQRFFKFSRDVYLPKPSWGNHT--PIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIP-EKSIILLHACAH 185 (401)
T ss_dssp HHHHHHHHHHHCTTCCEEEEEESCCTTHH--HHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSC-TTCEEEEESSSC
T ss_pred HHHHHHhhHhhcCCCceEEEecCCCcchh--hHHHHcCCeEEEEeccccccccccHHHHHHHHhcCC-CceEEEEecCCC
Confidence 3455566778999999999999887754 55788999999999753 45678888888887544 678999999999
Q ss_pred CCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccCceee---------cc-ccccceEEEecCCCcccCCCc--ceee
Q 017726 148 TATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAIDF---------RM-DEWGIDVALTGSQKALSLPTG--MGIV 212 (367)
Q Consensus 148 n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~---------~~-~~~~~d~~~~s~~K~~~g~~g--~g~~ 212 (367)
||||.+++ +++|.++|++ ++++|++|++|......- .. .....-+++.|++|.++ .+| +|++
T Consensus 186 NPTG~~~s~e~~~~l~~~a~~--~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~-~~G~RiG~~ 262 (401)
T d7aata_ 186 NPTGVDPRQEQWKELASVVKK--RNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMG-LYGERAGAF 262 (401)
T ss_dssp TTTCCCCCHHHHHHHHHHHHH--TTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC-CGGGCEEEE
T ss_pred CCccccCCHHHHHHHHHHHhc--ceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccce-eecccccee
Confidence 99999996 6678889999 999999999997654321 00 11123466778888874 444 6999
Q ss_pred eeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHH--HHHH---hChHHHHHHHHHHHHHHHH
Q 017726 213 CASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALD--LIFE---EGLENVIERHRRLGKATRL 287 (367)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~--~~~~---~g~~~~~~~~~~~~~~l~~ 287 (367)
+++++.++....... ......+... . .++..........+. .+.. ..+++.++++.++++.+.+
T Consensus 263 ~~~~~~~~~~~~~~~------~~~~~~~~~~----~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~ 331 (401)
T d7aata_ 263 TVICRDAEEAKRVES------QLKILIRPMY----S-NPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVS 331 (401)
T ss_dssp EEECSSHHHHHHHHH------HHHHHHHHHH----S-SCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchHHHHHHHHHHH------HHHHHhhccc----c-ccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988776655432110 0000000000 1 123322222222222 1111 1156778888999999999
Q ss_pred HHHHcC----CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHh
Q 017726 288 AVEAWG----LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQ 362 (367)
Q Consensus 288 ~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~ 362 (367)
.|++++ +..+.+ .+++++|+.+ + ++++++|.+++||++.+| +||++.+ ..++.+...+
T Consensus 332 ~L~~~~~~~~~~~~~~----~~G~F~~~~l----s-~e~~~~L~~e~gV~~~pg--------~Ris~a~~~~~~i~~la~ 394 (401)
T d7aata_ 332 NLKKEGSSHNWQHITD----QIGMFCFTGL----K-PEQVERLTKEFSIYMTKD--------GRISVAGVASSNVGYLAH 394 (401)
T ss_dssp HHHHTTCCSCCHHHHH----CCSSEEECCC----C-HHHHHHHHHHHCEECCTT--------CEEEGGGCCTTTHHHHHH
T ss_pred HHHHhCCCCCcceECC----CCeEEEecCC----C-HHHHHHHHHhCCEEECCC--------cEEEeccCCHHHHHHHHH
Confidence 999974 333444 4554554432 3 577899988899999886 4999765 4445576667
Q ss_pred hhhc
Q 017726 363 LLFQ 366 (367)
Q Consensus 363 ~l~~ 366 (367)
+|.+
T Consensus 395 ai~~ 398 (401)
T d7aata_ 395 AIHQ 398 (401)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.94 E-value=2.4e-25 Score=204.88 Aligned_cols=334 Identities=14% Similarity=0.059 Sum_probs=223.1
Q ss_pred CcccccCCCCCChHHHHHHHccCCCC-----CCCCcHHHHHHHHHHHHHHHhcCCCC--------ceEEecCChhHHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNED-----YRSPAVPALTKTLLEDIKKIFKTTSG--------TPFLIPTTGTGAWES 75 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~la~~~~~~~~--------~~v~~~~ggt~al~~ 75 (367)
+...+.+++...+.-+.+.+....+. ..+|....+..++.+++++++|.+.. ...++|+|||+|+..
T Consensus 75 ~f~~~~~~~~~~~~~l~~~~~~~~n~n~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~ 154 (476)
T d1js3a_ 75 YFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLV 154 (476)
T ss_dssp TBCSSSCCCCCHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHH
T ss_pred CeeEeCCCCCCHHHHHHHHHHHhhcccccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHH
Confidence 44455555554433333333332221 12445567788899999999999632 236899999999988
Q ss_pred HHHccC----------CCC--------C-eEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccC--
Q 017726 76 ALTNTL----------SPG--------D-RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT-- 134 (367)
Q Consensus 76 ~~~~~~----------~~g--------d-~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~-- 134 (367)
++.+.. .+| + .++++...|+| +.+++..+|+.++.|++++++++|+++|+++|++..
T Consensus 155 al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~S--i~ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~ 232 (476)
T d1js3a_ 155 ALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSS--VERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAA 232 (476)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHH--HHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcccccCcccccccCceEEEecccccHH--HHHHHHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhc
Confidence 774321 111 1 35666666776 457788899999999999999999999999998742
Q ss_pred CCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeecccc------ccceEEEecCCCcccCCCc
Q 017726 135 AHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDE------WGIDVALTGSQKALSLPTG 208 (367)
Q Consensus 135 ~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~------~~~d~~~~s~~K~~~g~~g 208 (367)
...|-+|+.+..++.+|.+.|+++|.++|++ +|+|+++|+|++.....++-.. ..+|.++.++|||+..|.+
T Consensus 233 g~~p~~VvataGtt~~G~iDpl~~I~~i~~~--~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~ 310 (476)
T d1js3a_ 233 GLIPFFVVATLGTTSCCSFDNLLEVGPICHE--EDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFD 310 (476)
T ss_dssp TCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH--TTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSS
T ss_pred CCCcEEEeecCCCccceeeccHHHHHHHHHh--cCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCc
Confidence 1346788999999999999999999999999 9999999999987654432211 2589999999999999999
Q ss_pred ceeeeeCHHHHHHhccCCCCceeechHHHHH----HhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Q 017726 209 MGIVCASPKALEASKTAKSVRVFFDWKDYIK----FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKA 284 (367)
Q Consensus 209 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~ 284 (367)
+|++++++....... ......+........ .+...+ ...+... ..+.++.+++.+...|+++++++..+++++
T Consensus 311 ~g~~l~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~sr~~-~al~lw~~l~~~G~~g~~~~i~~~~~lA~~ 387 (476)
T d1js3a_ 311 CSAMWVKRRTDLTGA-FKLDPVYLKHSHQGSGLITDYRHWQ-LPLGRRF-RSLKMWFVFRMYGVKGLQAYIRKHVQLSHE 387 (476)
T ss_dssp CEEEEESCHHHHHGG-GC------------CCSCCCGGGSS-SCSCCCC-THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeecccchHHHHHH-HhcChhhhccccccccccccccccc-cccchhh-HHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 999998865432211 111111111000000 000000 1112222 235678899999999999999999999999
Q ss_pred HHHHHHHc-CCccccCCCccCCCceEEEEcCCCCC--HHHHHHHHHhhCCeEEccCCCCCCC-cEEEEeecCCCCH
Q 017726 285 TRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHIN--SSEIVRRAWQRYNLSLGLGLNKVAG-KVFRIGHLGHLNE 356 (367)
Q Consensus 285 l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~L~~~~gv~v~~g~~~~~~-~~iRi~~~~~~~~ 356 (367)
+.+.|++. ++++..+ ....+++|+.. +.+ ..++.++|.+.-.+++.+.. ..+ .++|+++.+..++
T Consensus 388 l~~~l~~~~~fel~~~----p~l~iV~Fr~~-~~d~~n~~l~~~l~~~G~~~~s~t~--~~g~~~lR~~i~n~~Tt 456 (476)
T d1js3a_ 388 FEAFVLQDPRFEVCAE----VTLGLVCFRLK-GSDGLNEALLERINSARKIHLVPCR--LRGQFVLRFAICSRKVE 456 (476)
T ss_dssp HHHHHHHCTTEEECSC----CCSSEEEEEES-SCHHHHHHHHHHHHHHTSCBCEEEE--ETTEEEEEEECCCTTCC
T ss_pred HHHHHhcCCCeEEECC----CceEEEEEEcc-CChHHHHHHHHHHHhcCCEEEeeee--ECCEEEEEEEeCCCCCC
Confidence 99999998 8988876 34457889983 322 24677888766334444321 123 3599998765543
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=6.5e-25 Score=198.46 Aligned_cols=319 Identities=14% Similarity=0.088 Sum_probs=224.2
Q ss_pred CCCCCcccccCCCCCChHHHHHHHccCCCCCCCC----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc
Q 017726 5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSP----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT 80 (367)
Q Consensus 5 ~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~----~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~ 80 (367)
++-++.|+-....+.+-+.+.+++.++.....++ ...+...++++.+++++|.+. +++++||+.|+..++.++
T Consensus 49 ~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~g~e~---al~~~SG~~An~~~i~~l 125 (401)
T d1fc4a_ 49 NFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMED---AILYSSCFDANGGLFETL 125 (401)
T ss_dssp ECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSE---EEEESCHHHHHHTTHHHH
T ss_pred EEEccccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhhcCCc---eEEecchhhhhHHHHHHh
Confidence 3344555444333344445555555554433322 124677899999999999765 678899999999999999
Q ss_pred CCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc---cCCCCccEEEEEecCCCccccccHH
Q 017726 81 LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA---DTAHTIKAICIVHNETATGVTNNLS 157 (367)
Q Consensus 81 ~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~---~~~~~~~lv~~~~~~n~tG~~~~~~ 157 (367)
..++|.|++....|.+.. ..+...+.++..++.. |.+++++++++ .+ ++..+|++.+..+..|.+.|++
T Consensus 126 ~~~~d~i~~d~~~h~s~~--~G~~~~~a~~~~~~~~-----d~~~le~~~~~~~~~~-~~~~liv~egv~s~~G~~~~L~ 197 (401)
T d1fc4a_ 126 LGAEDAIISDALNHASII--DGVRLCKAKRYRYANN-----DMQELEARLKEAREAG-ARHVLIATDGVFSMDGVIANLK 197 (401)
T ss_dssp CCTTCEEEEETTCCHHHH--HHHHTSCSEEEEECTT-----CHHHHHHHHHHHHHTT-CSSEEEEEESEETTTTEECCHH
T ss_pred cCCCcEEEeCCcchHHHH--ccccccCceEEEEcCC-----ChHHHHHHHHHhhhcc-cCceEEEEcCCCCCCCchhhhh
Confidence 999999988887777643 4466678887777654 66666666544 22 4557888888888999999999
Q ss_pred HHHHHHHhcCCCcEEEEeeeeccCceeecc--------ccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCc
Q 017726 158 KVRKLLDEYRHPALFLVDGVSSICAIDFRM--------DEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR 229 (367)
Q Consensus 158 ~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~--------~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~ 229 (367)
++.++|++ +|+++++|++|+++.+.... ....+|+++.+++|.++|+.| |++.+++++++.+..... .
T Consensus 198 ~l~~L~~~--~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~G-g~v~g~~~~~~~l~~~~~-~ 273 (401)
T d1fc4a_ 198 GVCDLADK--YDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASG-GYTAARKEVVEWLRQRSR-P 273 (401)
T ss_dssp HHHHHHHH--TTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSC-EEEEECHHHHHHHHHHCH-H
T ss_pred HHHHHHhh--cCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCCc-ccccCCHHHHHHHHcCCh-h
Confidence 99999999 99999999999987653211 112589999999999976665 999999999887753210 0
Q ss_pred eeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceE
Q 017726 230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVT 309 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~ 309 (367)
+. +...++.....+...+++.+.+ .++++++..++.+++++.+.+.|+.+..+ .+ +++
T Consensus 274 -----------~~----~s~~l~p~~~~aa~~~l~~~~~--~~~~~~~l~~~~~~~~~~l~~~g~~~~~~----~~-pIv 331 (401)
T d1fc4a_ 274 -----------YL----FSNSLAPAIVAASIKVLEMVEA--GSELRDRLWANARQFREQMSAAGFTLAGA----DH-AII 331 (401)
T ss_dssp -----------HH----HSCCCCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTTCCBCCS----SS-SEE
T ss_pred -----------hh----hcCCCCHHHHHHHHhhhccccc--CHHHHHHHHHHHHHHHhhhcccCCccCCC----CC-CEE
Confidence 00 1123555555555556665544 36788999999999999999998877664 23 456
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCeEEccCCCC---CCCcEEEEeecCCCCHHHHHH
Q 017726 310 AVIVPSHINSSEIVRRAWQRYNLSLGLGLNK---VAGKVFRIGHLGHLNEVMFNF 361 (367)
Q Consensus 310 ~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~---~~~~~iRi~~~~~~~~~~~~~ 361 (367)
.+.+.+.....++.++|.++ ||.+.+...| .....+|+++...++++|++.
T Consensus 332 ~v~~~~~~~a~~~~~~L~~~-Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~ 385 (401)
T d1fc4a_ 332 PVMLGDAVVAQKFARELQKE-GIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITR 385 (401)
T ss_dssp EEEEECHHHHHHHHHHHHHT-TEECCEECTTSSCTTCEEEEEECCTTCCHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHC-CceEEeECCCCCCCCCceEEEEECCCCCHHHHHH
Confidence 56664444456788999765 9998764433 233459999988888776643
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.92 E-value=1.1e-24 Score=195.41 Aligned_cols=298 Identities=16% Similarity=0.099 Sum_probs=188.8
Q ss_pred CCCCCChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEE--eC
Q 017726 15 PGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISF--LI 92 (367)
Q Consensus 15 ~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~--~~ 92 (367)
++..+++++..+.+..+ .......+++++..++.++..+.+++++++|+++|+..++.++. +++.|++. .+
T Consensus 29 ~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~-~~~~vi~~~~~~ 101 (366)
T d2aeua1 29 SGGFLIDEKDKALLNTY------IGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALK-PKKVIHYLPELP 101 (366)
T ss_dssp CCCCCCCHHHHHHHTST------THHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHC-CSEEEEECSSSS
T ss_pred CCCCCccHHHHHHHHHh------cCchhhHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhC-CCCEEEEecCCC
Confidence 34456777777776543 22334567888889999998877789999999999999998864 66666554 24
Q ss_pred CcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcc-ccccHHHHHHHHHhcCCCcE
Q 017726 93 GQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATG-VTNNLSKVRKLLDEYRHPAL 171 (367)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG-~~~~~~~i~~~~~~~~~~~~ 171 (367)
.|.+. ...++..|++++. .+ |+|+++++++ ++||+|++++|+||++ .+.|+++|.++|++ +|++
T Consensus 102 ~~~~~--~~~~~l~g~~~v~--~~-----d~e~l~~~i~----~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~--~~~~ 166 (366)
T d2aeua1 102 GHPSI--ERSCKIVNAKYFE--SD-----KVGEILNKID----KDTLVIITGSTMDLKVIELENFKKVINTAKN--KEAI 166 (366)
T ss_dssp CCTHH--HHHHHHTTCEEEE--ES-----CHHHHHTTCC----TTEEEEEECBCTTSCBCCHHHHHHHHHHHHH--HTCC
T ss_pred cchhH--HHHHHhcCCeEEC--CC-----CHHHHHHhcC----CCceEEEEEecCCCCcCCHHHHHHHHHHhcc--CcEE
Confidence 55553 3567778887543 33 7899999888 5779999999988754 56789999999999 9999
Q ss_pred EEEeeeeccCceee----ccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCcc
Q 017726 172 FLVDGVSSICAIDF----RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFW 247 (367)
Q Consensus 172 vi~D~~~~~~~~~~----~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (367)
+++|++|+.+.... .....++|++++|.+|.++|+ ++|++++++++++++..... ..+
T Consensus 167 ~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK~~~g~-~~G~i~~~~~~i~~~~~~~~--------------~~g--- 228 (366)
T d2aeua1 167 VFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGP-RGGLLAGKKELVDKIYIEGT--------------KFG--- 228 (366)
T ss_dssp EEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSC-SCEEEEEEHHHHHHHHHHHH--------------TTT---
T ss_pred EEEecCccccccccccCCCHhhcCceEEEeccccccccc-ceeEEEecHHHHHHHHHHHh--------------ccc---
Confidence 99999987543221 122347899999999999765 46999999999988764310 011
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCC-CccCCCceEEEEcCCC-----CCH
Q 017726 248 PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQK-EEWFSDTVTAVIVPSH-----INS 319 (367)
Q Consensus 248 ~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~-~~~~~~~~~~~~~~~~-----~~~ 319 (367)
.+++.....++..+++.+.-..+++..++.+..+..+.+.+... ...-.... ........++...+.. .+.
T Consensus 229 -~~~~~~~~~a~~~aL~tl~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (366)
T d2aeua1 229 -LEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKL 307 (366)
T ss_dssp -CBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHHHHHH
T ss_pred -ccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhccccccccccCcccccCccchhccCCCcceeecccCH
Confidence 12344333444445543211112222222222222333333332 11111100 0001222333333211 134
Q ss_pred HHHHHHHHhhCCeEEccCCCC-CCCcEEEEeecCC
Q 017726 320 SEIVRRAWQRYNLSLGLGLNK-VAGKVFRIGHLGH 353 (367)
Q Consensus 320 ~~l~~~L~~~~gv~v~~g~~~-~~~~~iRi~~~~~ 353 (367)
.+++.+|.+++||.+.|+... ....++||++...
T Consensus 308 ~~~a~~Ll~~~gV~~ip~~~~p~~~~~lRis~~~~ 342 (366)
T d2aeua1 308 IEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSR 342 (366)
T ss_dssp HHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSG
T ss_pred HHHHHHHHHhCCEEEEECCCCCCCCCEEEEecccc
Confidence 578899998999999887543 3345799997543
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.92 E-value=3.7e-23 Score=180.71 Aligned_cols=310 Identities=15% Similarity=0.133 Sum_probs=227.8
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCC--------CCC---cHH-HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDY--------RSP---AVP-ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESA 76 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~--------~~~---~~~-~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~ 76 (367)
+.+.++|.-.-+++.|++++.....+. +.| .+. .+..-+.++..++||++..+ +=.-||+.|+..+
T Consensus 24 ~~l~LiaSEN~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~an--Vqp~SGs~An~av 101 (405)
T d1kl1a_ 24 AKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHAN--VQPHSGAQANMAV 101 (405)
T ss_dssp HSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSEEE--CCCSSHHHHHHHH
T ss_pred cCceEeccCCcCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCcce--eeccCchHHHHHH
Confidence 456788888889999999998754321 112 233 33444568888999987643 5567899999999
Q ss_pred HHccCCCCCeEEEEeCCcchHH---HHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 77 LTNTLSPGDRIISFLIGQFSLL---WIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 77 ~~~~~~~gd~vl~~~~~~~~~~---~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
+.++++|||+|+..+..+.++. ..........+....++++ ++.+|.|++++.+++ .|||+|++..-. .-.
T Consensus 102 ~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~---~kPklIi~G~S~--y~r 176 (405)
T d1kl1a_ 102 YFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARL---HRPKLIVAAASA--YPR 176 (405)
T ss_dssp HHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH---HCCSEEEECCSS--CCS
T ss_pred HHHhcCCCCEEEEeecccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHh---hCcceEEecccc--ccc
Confidence 9999999999999987444432 1111222346667777774 457999999999987 588999887644 334
Q ss_pred cccHHHHHHHHHhcCCCcEEEEeeeeccC-----ceeeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCC
Q 017726 153 TNNLSKVRKLLDEYRHPALFLVDGVSSIC-----AIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS 227 (367)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~vi~D~~~~~~-----~~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~ 227 (367)
..|.++++++|++ .|+++++|.+|..| ..+.++. ++|++++|+||+|.||+| |++..++++.+++.....
T Consensus 177 ~~d~~~~reIad~--vga~l~~D~aH~~GLIa~g~~~~P~~--~aDvvt~tThKtlrGPrg-g~I~~~~~~~~~i~~avf 251 (405)
T d1kl1a_ 177 IIDFAKFREIADE--VGAYLMVDMAHIAGLVAAGLHPNPVP--YAHFVTTTTHKTLRGPRG-GMILCQEQFAKQIDKAIF 251 (405)
T ss_dssp CCCHHHHHHHHHH--HTCEEEEECTTTHHHHHTTSSCCSTT--TCSEEEEESSSTTCCCSC-EEEEECHHHHHHHHHHHT
T ss_pred ccChHHHHHHHhh--hCCEEecchhhHhhhhhhhhcCChhh--hhhheeccccccccCCCC-ceEEecchhHHHHHhhhC
Confidence 5799999999999 99999999999654 3344443 589999999999999997 999999998887775433
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCc
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDT 307 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 307 (367)
+ |. .+.+....+++...++........+...++..+|++.|.+.|.+.|+.+++.. ..++
T Consensus 252 P---------------g~--qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~~vv~gg---Td~H 311 (405)
T d1kl1a_ 252 P---------------GI--QGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGG---TDNH 311 (405)
T ss_dssp T---------------TT--CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CSSS
T ss_pred c---------------cc--ccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCceeecCC---Cccc
Confidence 2 11 22477778889999988876555678889999999999999999999998743 3455
Q ss_pred eEEEEc-CCCCCHHHHHHHHHhhCCeEEc----cCC--CCCCCcEEEEeec
Q 017726 308 VTAVIV-PSHINSSEIVRRAWQRYNLSLG----LGL--NKVAGKVFRIGHL 351 (367)
Q Consensus 308 ~~~~~~-~~~~~~~~l~~~L~~~~gv~v~----~g~--~~~~~~~iRi~~~ 351 (367)
++++.+ +.+.+..+..+.| ++.||.+. |+. .+..++.||||..
T Consensus 312 ~vlvdl~~~~~~g~~ae~~L-e~agI~~Nkn~iP~d~~~~~~~SGiRiGT~ 361 (405)
T d1kl1a_ 312 LLLVDLRPQQLTGKTAEKVL-DEVGITVNKNTIPYDPESPFVTSGIRIGTA 361 (405)
T ss_dssp EEEEECGGGTCCHHHHHHHH-HHHTEECEECCCTTCSSCTTTCSEEEEECH
T ss_pred eeeccccccCCcHHHHHHHH-HHcCeEEcCCcCCCCCCCCCCCCceeecCH
Confidence 677777 3366776666666 56699886 332 1233467999973
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=3e-23 Score=182.18 Aligned_cols=310 Identities=17% Similarity=0.155 Sum_probs=226.2
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCC--------C---CCcHHHHH-HHHHHHHHHHhcCCCCceEEecCChhHHHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDY--------R---SPAVPALT-KTLLEDIKKIFKTTSGTPFLIPTTGTGAWESA 76 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~--------~---~~~~~~~~-~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~ 76 (367)
+.+.++|.-.-+++.|++++.....+. + +..+.+.. .-+.++..++||+...+ +-..||+.|+..+
T Consensus 27 ~~i~LiaSEN~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~an--Vqp~SGs~AN~av 104 (416)
T d1dfoa_ 27 EHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYAN--VQPHSGSQANFAV 104 (416)
T ss_dssp HSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEE--CCCSSHHHHHHHH
T ss_pred cCceEecCcccCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCcce--eecccCccHHHHH
Confidence 456788888899999999998754321 1 12233333 34567778899987643 5568899999999
Q ss_pred HHccCCCCCeEEEEeCCcchHH---HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccc
Q 017726 77 LTNTLSPGDRIISFLIGQFSLL---WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT 153 (367)
Q Consensus 77 ~~~~~~~gd~vl~~~~~~~~~~---~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~ 153 (367)
+.++++|||+|+..+..+.++. ...-......+....+.+.++.+|.|++++.+.+ .+||+|++..- .....
T Consensus 105 ~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~---~kPklIi~G~S--~y~r~ 179 (416)
T d1dfoa_ 105 YTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKE---HKPKMIIGGFS--AYSGV 179 (416)
T ss_dssp HHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHH---HCCSEEEEECS--SCCSC
T ss_pred HHHhcCCCCeeeeccccccccccccccccccCceEEEEecccCCccCccHHHHHHHHHH---hccceEEeccc--ccccc
Confidence 9999999999999988665542 1111222345666667777778999999999887 58899998753 45567
Q ss_pred ccHHHHHHHHHhcCCCcEEEEeeeeccCc-----eeeccccccceEEEecCCCcccCCCcceeeeeC---HHHHHHhccC
Q 017726 154 NNLSKVRKLLDEYRHPALFLVDGVSSICA-----IDFRMDEWGIDVALTGSQKALSLPTGMGIVCAS---PKALEASKTA 225 (367)
Q Consensus 154 ~~~~~i~~~~~~~~~~~~vi~D~~~~~~~-----~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~---~~~~~~~~~~ 225 (367)
.|.++++++|++ .|+++++|.+|..|. .+.++. .+|++++|+||+|.||+| |++..+ +++.+++...
T Consensus 180 ~d~~~~reiad~--vga~l~~D~aH~~GLIa~g~~~sP~~--~aDvvt~tThKtlrGPrg-giI~~~~~~~~~~~~i~~a 254 (416)
T d1dfoa_ 180 VDWAKMREIADS--IGAYLFVDMAHVAGLVAAGVYPNPVP--HAHVVTTTTHKTLAGPRG-GLILAKGGSEELYKKLNSA 254 (416)
T ss_dssp CCHHHHHHHHHH--TTCEEEEECTTTHHHHHHTSSCCCTT--TSSEEEEESSSTTCCCSC-EEEEESSCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHh--cCceEEcchhhhhcceeccccCCccc--ccceeeeehhhcccCCCc-eEEEeccchHhHHHHHHhh
Confidence 899999999999 999999999997543 333443 479999999999999997 888875 5666666543
Q ss_pred CCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCC
Q 017726 226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFS 305 (367)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 305 (367)
..+ |. .+.+....+++...++........+...++..+|++.|.+.|.+.|+.++... ..
T Consensus 255 vfP---------------g~--qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~~iv~gg---Td 314 (416)
T d1dfoa_ 255 VFP---------------GG--QGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGG---TD 314 (416)
T ss_dssp HTT---------------TT--CSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CS
T ss_pred hCc---------------cc--ccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCC---CC
Confidence 222 11 22366777788888888866555678889999999999999999999998743 24
Q ss_pred CceEEEEcC-CCCCHHHHHHHHHhhCCeEEc----cCC--CCCCCcEEEEeec
Q 017726 306 DTVTAVIVP-SHINSSEIVRRAWQRYNLSLG----LGL--NKVAGKVFRIGHL 351 (367)
Q Consensus 306 ~~~~~~~~~-~~~~~~~l~~~L~~~~gv~v~----~g~--~~~~~~~iRi~~~ 351 (367)
++++.+++. .+++..++.+.| ++.||.+- |+. .+..++.||||..
T Consensus 315 nHlvlvdl~~~~~~G~~a~~~L-e~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~ 366 (416)
T d1dfoa_ 315 NHLFLVDLVDKNLTGKEADAAL-GRANITVNKNSVPNDPKSPFVTSGIRVGTP 366 (416)
T ss_dssp SSEEEEECGGGTCCHHHHHHHH-HHTTEECEECCCTTCSSCTTTCSEEEEECH
T ss_pred CceeEEEecccCCCHHHHHHHH-HHcCeEEeCCcCCCCCCCCCCCCceEeCCH
Confidence 456667763 366777777776 56799875 222 1233567999973
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.92 E-value=2.3e-23 Score=189.94 Aligned_cols=322 Identities=11% Similarity=-0.017 Sum_probs=200.2
Q ss_pred CcccccCC-------CCCChHHHHHHHccC---CCCCCCCcHHHHHHHHHHHHHHHhcCC-------CCceEEecCChhH
Q 017726 9 KNHLFVPG-------PVHIPDQVIRAMNRN---NEDYRSPAVPALTKTLLEDIKKIFKTT-------SGTPFLIPTTGTG 71 (367)
Q Consensus 9 ~~~~~~~~-------p~~~~~~v~~a~~~~---~~~~~~~~~~~~~~~~~~~la~~~~~~-------~~~~v~~~~ggt~ 71 (367)
++++++-| ++++.+.|.++.... .....+|....+..++|+.+++++.-. ....++.+.+++.
T Consensus 31 ~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (412)
T d1ajsa_ 31 RKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTG 110 (412)
T ss_dssp TCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred CcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhh
Confidence 44666666 456667777774432 122234555677889999999987432 2223455556555
Q ss_pred HHHHHH-------HccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEe-CC--CCCCCCHHHHHHHHhccCCCCccEE
Q 017726 72 AWESAL-------TNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVE-SD--WGEGAKLDVLASKLAADTAHTIKAI 141 (367)
Q Consensus 72 al~~~~-------~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~-~~--~~~~~d~e~l~~~i~~~~~~~~~lv 141 (367)
++..+. .++++|||.|++++|.|+.+. .+++..|.+.+.++ .. ..+..|.+.+++.+...+ ++++++
T Consensus 111 ~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~--~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~i 187 (412)
T d1ajsa_ 111 ALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHN--GVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAP-EFSIFV 187 (412)
T ss_dssp HHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHH--HHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSC-TTCEEE
T ss_pred HHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhH--HHHHHcCCeEEEeecccccccccccHHHHHHHHHhcc-CCcEEE
Confidence 554433 345799999999999877653 55677888765543 22 234568888887776544 678999
Q ss_pred EEEecCCCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccCceee----------ccccccceEEEecCCCcccCCCc
Q 017726 142 CIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAIDF----------RMDEWGIDVALTGSQKALSLPTG 208 (367)
Q Consensus 142 ~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~----------~~~~~~~d~~~~s~~K~~~g~~g 208 (367)
++++||||||.+++ +++|.++|++ ||++|++|++|......- ........+++.|++|.++ .+|
T Consensus 188 l~~~P~NPTG~v~s~e~~~~i~~la~~--~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~-~~G 264 (412)
T d1ajsa_ 188 LHACAHNPTGTDPTPEQWKQIASVMKR--RFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFG-LYN 264 (412)
T ss_dssp EESSSCTTTCCCCCHHHHHHHHHHHHH--HTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSC-CGG
T ss_pred EecCCCCCcCCCCCHHHHHHHHHHHhh--CCEEEEecHhhhhhhcCCcccchhhhhhhhhhccccccccccccccc-CCC
Confidence 99999999999997 6778999999 999999999997544321 0111234577778888875 444
Q ss_pred --ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHH------HHHHhChHHHHHHHHH
Q 017726 209 --MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALD------LIFEEGLENVIERHRR 280 (367)
Q Consensus 209 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~------~~~~~g~~~~~~~~~~ 280 (367)
+|++++.+..++.+.... ........+. +. .++..+..++...+. .+.++ ++.+++++.+
T Consensus 265 ~R~G~~~~~~~~~~~~~~~~---------~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 332 (412)
T d1ajsa_ 265 ERVGNLTVVAKEPDSILRVL---------SQMQKIVRVT-WS-NPPAQGARIVARTLSDPELFHEWTGN-VKTMADRILS 332 (412)
T ss_dssp GCEEEEEEECSSHHHHHHHH---------HHHHHHHHTT-TS-SCCSHHHHHHHHHHHSHHHHHHHHHH-HHHHHHHHHH
T ss_pred CCccccccchhHHHHHHHHH---------HHHHHHhhcc-cc-ccchHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHH
Confidence 688888766554443210 0000011111 11 123222222222222 12222 6778888999
Q ss_pred HHHHHHHHHHHcCC----ccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCC
Q 017726 281 LGKATRLAVEAWGL----KNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLN 355 (367)
Q Consensus 281 ~~~~l~~~L~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~ 355 (367)
+++.+.+.|++++. ..+.+ ..+++.+ + +.+ ++++++|++++||++.+|. ||++.+ ..+
T Consensus 333 ~r~~l~~~L~~~~~~~~~~~i~~----~~G~F~~--~--~ls-~~~v~~L~~e~gV~~vpg~--------Ri~~ag~~~~ 395 (412)
T d1ajsa_ 333 MRSELRARLEALKTPGTWNHITD----QIGMFSF--T--GLN-PKQVEYLINQKHIYLLPSG--------RINMCGLTTK 395 (412)
T ss_dssp HHHHHHHHHHHTTCSSCCHHHHH----CCSSEEE--C--CCC-HHHHHHHHHTTCEECCTTS--------EEEGGGCCTT
T ss_pred HHHHHHHHHHHhCCCCCeeeecC----CCeEEEe--c--CCC-HHHHHHHHHhCCEEEeCCC--------eEEeccCCHH
Confidence 99999999999753 33333 3443333 3 233 4667888889999988763 999765 445
Q ss_pred HHHHHHhhhh
Q 017726 356 EVMFNFQLLF 365 (367)
Q Consensus 356 ~~~~~~~~l~ 365 (367)
..|...++|+
T Consensus 396 ~i~~~a~aI~ 405 (412)
T d1ajsa_ 396 NLDYVATSIH 405 (412)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.92 E-value=4.2e-23 Score=186.13 Aligned_cols=317 Identities=15% Similarity=0.151 Sum_probs=210.8
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeEEEEeCCcch
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFS 96 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl~~~~~~~~ 96 (367)
.+.++-++++.+.... ....+ ...+++++.+++++|.+. +++++|||.|+.+++.++ +.+||+|++++..+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~G--~~v~~~E~~la~~~g~~~---ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~ 83 (376)
T d1mdoa_ 9 AMGAEELAAVKTVLDSGWITTG--PKNQELEAAFCRLTGNQY---AVAVSSATAGMHIALMALGIGEGDEVITPSMTWVS 83 (376)
T ss_dssp CCCHHHHHHHHHHHHHTCCSSS--HHHHHHHHHHHHHHCCSE---EEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHH
T ss_pred CCCHHHHHHHHHHHhcCCCcCC--HHHHHHHHHHHHHHCcCe---EEEeCCHHHHHHHHHHHhCCCCCCEEEEecccccc
Confidence 4455555555553222 12233 567899999999999864 678899999999999987 8999999999998777
Q ss_pred HHHHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEe
Q 017726 97 LLWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD 175 (367)
Q Consensus 97 ~~~~~~~~~~g~~~~~v~~~~~-~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D 175 (367)
.. ......|.+++.++++.+ +.+|+++++++++ ++|++|+++| ..|...|+++|.++|++ +|++||+|
T Consensus 84 ~~--~ai~~~g~~pv~~d~~~~~~~~d~~~l~~~i~----~~tkaIi~~h---~~G~~~~~~~i~~i~~~--~~i~vIeD 152 (376)
T d1mdoa_ 84 TL--NMIVLLGANPVMVDVDRDTLMVTPEHIEAAIT----PQTKAIIPVH---YAGAPADLDAIYALGER--YGIPVIED 152 (376)
T ss_dssp HH--HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCC----TTEEEECCBC---GGGCCCCHHHHHHHHHH--HTCCBCEE
T ss_pred cc--cchhccccceeeecccccccCCCHHHHHHhcC----CCCeEEEEeC---CCCCccchhHHHHHHHh--cCceEEec
Confidence 54 446778999999999864 6789999999998 5779998876 58999999999999999 99999999
Q ss_pred eeeccCceee--ccccccceEEEecCCCcccCCCcceeeee-CHHHHHHhccCCCCceeechHHH-----HHHhh---cC
Q 017726 176 GVSSICAIDF--RMDEWGIDVALTGSQKALSLPTGMGIVCA-SPKALEASKTAKSVRVFFDWKDY-----IKFYN---LG 244 (367)
Q Consensus 176 ~~~~~~~~~~--~~~~~~~d~~~~s~~K~~~g~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~ 244 (367)
++|++++..- .....+..+++++.+|.+.++.| |+++. ++++.+++......+........ ...++ .+
T Consensus 153 ~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~G-G~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g 231 (376)
T d1mdoa_ 153 AAHATGTSYKGRHIGARGTAIFSFHAIKNITCAEG-GIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPG 231 (376)
T ss_dssp CTTCTTCEETTEETTSSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCC
T ss_pred cchhccCeeCCeecccccCccccCCCcCCCCCCCC-CEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcc
Confidence 9999987532 23334556667778899976666 65554 55555656554432222111000 00011 11
Q ss_pred CccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCC-CccCCCceEEEEcCC---CCCH
Q 017726 245 TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQK-EEWFSDTVTAVIVPS---HINS 319 (367)
Q Consensus 245 ~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~~~~~~~~~~~---~~~~ 319 (367)
. .+.++ .+.+++...+-..++++.++..++++++.+.|++. +..+.... ........+.+.+.. +.+.
T Consensus 232 ~--n~~~~-----~~~Aai~~~qL~~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R 304 (376)
T d1mdoa_ 232 Y--KYNLP-----DLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITR 304 (376)
T ss_dssp C--BCCCC-----HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHSSCH
T ss_pred c--ccccc-----hhhhhhhhhhhhhhhHHHHHHhhhhhhhhhhcccccccccccccccccccccccccccccccchhhH
Confidence 1 11122 23445555544557788889999999999999987 33333322 111233333344321 2345
Q ss_pred HHHHHHHHhhCCeEEccCCCCC---------------------CCcEEEEeecCCCCHHHHH
Q 017726 320 SEIVRRAWQRYNLSLGLGLNKV---------------------AGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 320 ~~l~~~L~~~~gv~v~~g~~~~---------------------~~~~iRi~~~~~~~~~~~~ 360 (367)
+++.+.|.++ ||.++..+.+. ....+++-.+...+++|+.
T Consensus 305 d~l~~~L~~~-gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~ 365 (376)
T d1mdoa_ 305 DALMASLKTK-GIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFD 365 (376)
T ss_dssp HHHHHHHHHT-TBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHH
T ss_pred HHHHHHHHHC-CCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHH
Confidence 6899999655 99887654321 0235888777777665443
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=2.5e-24 Score=195.44 Aligned_cols=324 Identities=11% Similarity=-0.012 Sum_probs=203.7
Q ss_pred CcccccCC-------CCCChHHHHHHHccCC---CCCCCCcHHHHHHHHHHHHHHHhcCC-----CCceEEecCChhH--
Q 017726 9 KNHLFVPG-------PVHIPDQVIRAMNRNN---EDYRSPAVPALTKTLLEDIKKIFKTT-----SGTPFLIPTTGTG-- 71 (367)
Q Consensus 9 ~~~~~~~~-------p~~~~~~v~~a~~~~~---~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~v~~~~ggt~-- 71 (367)
++++++.| .+++++.|.+|..... .....|.+..+..++|+.+++++.-. .++.++.+.++++
T Consensus 27 ~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~ 106 (397)
T d3tata_ 27 DKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSG 106 (397)
T ss_dssp SCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHH
T ss_pred CcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHH
Confidence 34566655 3456788888865432 22334666677889999999988643 2334555554443
Q ss_pred --HHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhccCCCCccEEEEEecC
Q 017726 72 --AWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNE 147 (367)
Q Consensus 72 --al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~ 147 (367)
++.+++..++.|||.|++++|.|+.+. ..++..|.+++.+++..+ +..|.+++.+.+...+ ++++++++++||
T Consensus 107 ~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~--~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~ 183 (397)
T d3tata_ 107 ALKVGADFLKRYFPESGVWVSDPTWENHV--AIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLP-ARSIVLLHPCCH 183 (397)
T ss_dssp HHHHHHHHHHHHCSSCCCEECSSCCTTHH--HHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCC-SSCCCEECSSSC
T ss_pred HHHHHHHHhhhcCCCCcceecccCccccH--HHHHHcCCEEEEEecchhhccccchHHHHHHhhhcc-cccEEEEecCCC
Confidence 344555567899999999999887754 457789999999998654 3568888888777554 678999999999
Q ss_pred CCcccccc---HHHHHHHHHhcCCCcEEEEeeeeccCceeec---------cccccceEEEecCCCcccCCCc--ceeee
Q 017726 148 TATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAIDFR---------MDEWGIDVALTGSQKALSLPTG--MGIVC 213 (367)
Q Consensus 148 n~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~---------~~~~~~d~~~~s~~K~~~g~~g--~g~~~ 213 (367)
||||.+++ +++|.++|++ +++++++|++|.......+ ......-+++.|++|.++ .+| +|+++
T Consensus 184 NPTG~~~s~~~~~~l~~~a~~--~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~G~RiG~~~ 260 (397)
T d3tata_ 184 NPTGADLTNDQWDAVIEILKA--RELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFS-LYGERVGGLS 260 (397)
T ss_dssp SSSCCCCCHHHHHHHHHHHHH--TTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHT-BTTTCCBCCE
T ss_pred CCCCeeCCHHHHHHHHHHHhh--cCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCccccc-ccCccccccc
Confidence 99999996 5678888888 9999999999986543210 111123588889999884 544 69988
Q ss_pred eCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHH---HHH--hChHHHHHHHHHHHHHHHHH
Q 017726 214 ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL---IFE--EGLENVIERHRRLGKATRLA 288 (367)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~---~~~--~g~~~~~~~~~~~~~~l~~~ 288 (367)
+++..++...... ........++ +...+...+ .++...+.. ..+ ..++..++++.+.++.+.+.
T Consensus 261 ~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 329 (397)
T d3tata_ 261 VMCEDAEAAGRVL---------GQLKATVRRN-YSSPPNFGA-QVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKV 329 (397)
T ss_dssp EECSSTTHHHHHH---------HHHHHHTTTT-TSSCCSHHH-HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHH---------HHHHHHhhcc-cccccHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765543322110 0000011111 112233222 222222211 011 11445566666677777777
Q ss_pred HHHcC----CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHhh
Q 017726 289 VEAWG----LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQL 363 (367)
Q Consensus 289 L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~ 363 (367)
|++.+ +.+..+ .++++.|+.+ + .+++++|.+++||++.+|. ||++.+ ..++.+...++
T Consensus 330 L~~~~~~~~~~~~~~----~~G~F~~~~l----s-~e~~~~L~~e~~V~l~~g~--------Ri~~a~~~~~~i~~~~~a 392 (397)
T d3tata_ 330 LSTEMPERNFDYLLN----QRGMFSYTGL----S-AAQVDRLREEFGVYLIASG--------RMCVAGLNTANVQRVAKA 392 (397)
T ss_dssp TTTTCTTSCTTHHHH----CCSSBCCCCC----C-HHHHHHHTTTTCEECCSSS--------CCBTTSCCTTTHHHHHHH
T ss_pred HHHhCCCCceEEEcC----CCceEEecCc----C-HHHHHHHHHhCCEEeCCCC--------EEEeccCCHHHHHHHHHH
Confidence 76642 344444 3554444433 2 5778999999999998763 898766 34455777776
Q ss_pred hhc
Q 017726 364 LFQ 366 (367)
Q Consensus 364 l~~ 366 (367)
|++
T Consensus 393 i~~ 395 (397)
T d3tata_ 393 FAA 395 (397)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.91 E-value=5.7e-23 Score=187.17 Aligned_cols=326 Identities=11% Similarity=0.005 Sum_probs=201.9
Q ss_pred cccccCC-------CCCChHHHHHHHccC---CCCCCCCcHHHHHHHHHHHHHHHhcCC-----CCceEEe--cCChhHH
Q 017726 10 NHLFVPG-------PVHIPDQVIRAMNRN---NEDYRSPAVPALTKTLLEDIKKIFKTT-----SGTPFLI--PTTGTGA 72 (367)
Q Consensus 10 ~~~~~~~-------p~~~~~~v~~a~~~~---~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~v~~--~~ggt~a 72 (367)
++++.-| .+++++.|.++.... ......|....+..++|+.+++++.-. .++.++. +.++..+
T Consensus 31 kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (412)
T d1yaaa_ 31 KVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGA 110 (412)
T ss_dssp CEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred cEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhH
Confidence 4555554 345667777765432 122234555577789999999886432 1222222 2333344
Q ss_pred HHHHH--HccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCC
Q 017726 73 WESAL--TNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNET 148 (367)
Q Consensus 73 l~~~~--~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n 148 (367)
+..++ .....+||.|++++|.|+.+. ..++..|.+++.++... .+..+.+.+++.+.+.+ ++++++++++|||
T Consensus 111 ~~~~~~~~~~~~~gd~Vlip~P~~~~y~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~~P~N 187 (412)
T d1yaaa_ 111 LHISAKFFSKFFPDKLVYLSKPTWANHM--AIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAP-EGSIFVLHSCAHN 187 (412)
T ss_dssp HHHHHHHHHHHCTTCCEEEEESCCTTHH--HHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSC-TTCEEEEECSSCT
T ss_pred HHHHHHHHhccCCCCEEecccccCchhH--HHHHHcCCceecccccccccccccchhhhcccccCC-CceEEEEecCCCC
Confidence 33332 345689999999999777654 45788899999998753 34568888888887765 5778999999999
Q ss_pred Ccccccc---HHHHHHHHHhcCCCcEEEEeeeeccCceeec-------------cccccceEEEecCCCcccCCCc--ce
Q 017726 149 ATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAIDFR-------------MDEWGIDVALTGSQKALSLPTG--MG 210 (367)
Q Consensus 149 ~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~-------------~~~~~~d~~~~s~~K~~~g~~g--~g 210 (367)
|||.+++ +++|.++|++ +++++++|++|......-. .......+++.|++|.++ .+| +|
T Consensus 188 PTG~~~s~~~~~~i~~~a~~--~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~G~RiG 264 (412)
T d1yaaa_ 188 PTGLDPTSEQWVQIVDAIAS--KNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAG-MYGERVG 264 (412)
T ss_dssp TTCCCCCHHHHHHHHHHHHH--TTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSC-CGGGCEE
T ss_pred CccccCCHHHHHHHHhhhcc--CCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccc-cCcCceE
Confidence 9999996 6778888898 9999999999975543210 111234588889999884 444 69
Q ss_pred eeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHH------HHHhChHHHHHHHHHHHHH
Q 017726 211 IVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL------IFEEGLENVIERHRRLGKA 284 (367)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~------~~~~g~~~~~~~~~~~~~~ 284 (367)
+++++++.++....... ............+ ...++.....+...++.. +.+ .++.++++++++++.
T Consensus 265 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~r~~ 336 (412)
T d1yaaa_ 265 CFHLALTKQAQNKTIKP-----AVTSQLAKIIRSE--VSNPPAYGAKIVAKLLETPELTEQWHK-DMVTMSSRITKMRHA 336 (412)
T ss_dssp EEEEECCSCTTHHHHHH-----HHHHHHHHHHHTT--TSSCCHHHHHHHHHHHHSHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred EEEEchhhhhhHHHHHH-----HHHHHHHHHHHHH--hcCCChHHHHHHHHHhcChHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 99988665332221100 0000000001111 112333322222222221 111 167788889999999
Q ss_pred HHHHHHHcC----CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHH
Q 017726 285 TRLAVEAWG----LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMF 359 (367)
Q Consensus 285 l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~ 359 (367)
+.+.|++.| +.++.+ .++++.++. .+ ++++++|.+++||++.+|. ||++.+ ..+..+.
T Consensus 337 l~~~L~~~g~~~~~~~~~~----~gG~F~~~~----ls-~e~~~~L~~e~~V~~~~g~--------Ris~~g~~~~~i~~ 399 (412)
T d1yaaa_ 337 LRDHLVKLGTPGNWDHIVN----QCGMFSFTG----LT-PQMVKRLEETHAVYLVASG--------RASIAGLNQGNVEY 399 (412)
T ss_dssp HHHHHHHHTCSSCCTHHHH----CCSSEEECC----CC-HHHHHHHHHHHCEECCTTS--------EEEGGGCCTTTHHH
T ss_pred HHHHHHHhCCCCCCceeCC----CceEEEecC----cC-HHHHHHHHHhCCEEECCCC--------EEEeccCCHHHHHH
Confidence 999999975 344444 355443332 33 4678999889999887753 888765 3445566
Q ss_pred HHhhhhc
Q 017726 360 NFQLLFQ 366 (367)
Q Consensus 360 ~~~~l~~ 366 (367)
..++|++
T Consensus 400 l~~ai~~ 406 (412)
T d1yaaa_ 400 VAKAIDE 406 (412)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666553
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=3.5e-23 Score=187.80 Aligned_cols=324 Identities=12% Similarity=-0.003 Sum_probs=205.2
Q ss_pred CcccccCC-------CCCChHHHHHHHccCCC--CCCCCcHHHHHHHHHHHHHHHhcCC------CC-ceEEecCChhHH
Q 017726 9 KNHLFVPG-------PVHIPDQVIRAMNRNNE--DYRSPAVPALTKTLLEDIKKIFKTT------SG-TPFLIPTTGTGA 72 (367)
Q Consensus 9 ~~~~~~~~-------p~~~~~~v~~a~~~~~~--~~~~~~~~~~~~~~~~~la~~~~~~------~~-~~v~~~~ggt~a 72 (367)
++++++.| ..++++.|.+++.+... ...+|....+..++|+.+++++.-. +. ...+.+.+++.+
T Consensus 27 ~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (396)
T d2q7wa1 27 GKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGA 106 (396)
T ss_dssp -CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHH
T ss_pred CcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHH
Confidence 44667766 23556778887665321 1224555577789999999887432 22 223455555555
Q ss_pred HHHHH--HccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhccCCCCccEEEEEecCC
Q 017726 73 WESAL--TNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNET 148 (367)
Q Consensus 73 l~~~~--~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n 148 (367)
+.+++ ...+.+||.|++++|.|+.+. ..++..|.+++.++...+ +..+.+.+++...+.. ++++++++++|||
T Consensus 107 ~~l~~~~l~~~~~gd~Vlvp~P~y~~y~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~P~N 183 (396)
T d2q7wa1 107 LRVAADFLAKNTSVKRVWVSNPSWPNHK--SVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQ-AGDVVLFHGCCHN 183 (396)
T ss_dssp HHHHHHHHHHHSCCCEEEEEESCCTHHH--HHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCC-TTCEEEEECSSCT
T ss_pred HHHHHHHHhhcccceEEEEecCCCccch--HHHHHcCCeeEecccccccccccccchHHHHHHHhc-cCcEEEEecCCcC
Confidence 54443 345789999999999877754 557789999999987643 3456777777766544 6788999999999
Q ss_pred Ccccccc---HHHHHHHHHhcCCCcEEEEeeeeccCceeec---------cccccceEEEecCCCcccCCCc--ceeeee
Q 017726 149 ATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAIDFR---------MDEWGIDVALTGSQKALSLPTG--MGIVCA 214 (367)
Q Consensus 149 ~tG~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~---------~~~~~~d~~~~s~~K~~~g~~g--~g~~~~ 214 (367)
|||.+++ +++|.++|++ ++++||+|++|.......+ .......+++.|++|.++ .+| +|++++
T Consensus 184 PTG~~~s~e~~~~l~~la~~--~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~-~~G~R~G~~~~ 260 (396)
T d2q7wa1 184 PTGIDPTLEQWQTLAQLSVE--KGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFG-LYNERVGACTL 260 (396)
T ss_dssp TTCCCCCHHHHHHHHHHHHH--HTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTT-CGGGCCEEEEE
T ss_pred CcCeecCHHHHHHHHHHHhc--CCeEEEEeccccccccCCccCchHhhhhhhhccccccccccccccc-ccCCCcccccc
Confidence 9999997 5578888999 9999999999986543210 011234577788888874 444 699998
Q ss_pred CHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHH--H---HHhChHHHHHHHHHHHHHHHHHH
Q 017726 215 SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL--I---FEEGLENVIERHRRLGKATRLAV 289 (367)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~--~---~~~g~~~~~~~~~~~~~~l~~~L 289 (367)
++..++....... ......... ...++..+..++...+.. . .++.+++++++++++++.+.+.|
T Consensus 261 ~~~~~~~~~~~~~---------~~~~~~~~~--~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L 329 (396)
T d2q7wa1 261 VAADSETVDRAFS---------QMKAAIRAN--YSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTL 329 (396)
T ss_dssp ECSSHHHHHHHHH---------HHHHHHHTT--TSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHH
T ss_pred chhHHHHHHHhhh---------hhhhhhhcc--ccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8776655442110 000000011 112333333333322211 0 11226777888999999999999
Q ss_pred HHcCC----ccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHhhh
Q 017726 290 EAWGL----KNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQLL 364 (367)
Q Consensus 290 ~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~l 364 (367)
+++|. ..+.+ ..+.+.|+.+ + ++++++|.+++||.+.+|. ||++.+ ..++.+...++|
T Consensus 330 ~~~~~~~~~~~~~~----~~G~F~~~~l----~-~e~~~~L~~e~gV~~~~g~--------Ri~~a~l~~~~i~~~~~ai 392 (396)
T d2q7wa1 330 QEKGANRDFSFIIK----QNGMFSFSGL----T-KEQVLRLREEFGVYAVASG--------RVNVAGMTPDNMAPLCEAI 392 (396)
T ss_dssp HHTTCCSCCTHHHH----CCSSEEECCC----C-HHHHHHHHHHHCEECCTTC--------EEEGGGCCTTTHHHHHHHH
T ss_pred HHhCCCCCcceecC----CCeEEEeeCC----C-HHHHHHHHHhCCEEECCCC--------EEEecCCCHHHHHHHHHHH
Confidence 99853 33343 3454444332 3 4778899888999887653 999766 445667777776
Q ss_pred hc
Q 017726 365 FQ 366 (367)
Q Consensus 365 ~~ 366 (367)
.+
T Consensus 393 ~~ 394 (396)
T d2q7wa1 393 VA 394 (396)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.91 E-value=5.4e-22 Score=175.63 Aligned_cols=285 Identities=16% Similarity=0.115 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.+....+++.++++-|.+. .++++||..|+..++.+++.+||+|++.+..|.+.. +.......|+++..++..
T Consensus 58 nPT~~~LE~~la~LEg~~~---a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~~-- 132 (392)
T d1gc0a_ 58 NPTLNLLEARMASLEGGEA---GLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA-- 132 (392)
T ss_dssp CHHHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTT--
T ss_pred ChHHHHHHHHHHHHhCCcc---eeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCcccccCCcc--
Confidence 3567899999999998654 456699999999999999999999999999888875 456667789999998754
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|+++++++++ ++||+|++.+|.||+..+.|+++|+++||+ +|+++++|.+.+-+.. ....+.|+|+++.|
T Consensus 133 ---d~~~~~~ai~----~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~--~g~~~vvDnT~atP~~-~~Pl~~GaDivihS 202 (392)
T d1gc0a_ 133 ---DLQALEAAMT----PATRVIYFESPANPNMHMADIAGVAKIARK--HGATVVVDNTYCTPYL-QRPLELGADLVVHS 202 (392)
T ss_dssp ---CHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHGG--GTCEEEEECTTTHHHH-CCGGGGTCSEEEEE
T ss_pred ---CHHHHHHhCC----CCCeEEEecccccceeeecchHHHHHHHHh--cCCEEEEecCccCccc-cChHHhCCCEEEEe
Confidence 7899999998 577999999999999999999999999999 9999999998764332 23335689999999
Q ss_pred CCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 199 SQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
.+|+++|... .|.++++++.+.+++.... .+. .|. .++....+.+...++. +.-+.+
T Consensus 203 ~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~-----------~~~-~G~----~~~p~da~ll~rgl~T-----L~lRm~ 261 (392)
T d1gc0a_ 203 ATKYLSGHGDITAGIVVGSQALVDRIRLQGL-----------KDM-TGA----VLSPHDAALLMRGIKT-----LNLRMD 261 (392)
T ss_dssp TTTTTTCSSSCCCEEEEECHHHHHHHHHTHH-----------HHH-TCC----CCCHHHHHHHHHHHTT-----HHHHHH
T ss_pred cceeecCCcccccccccchhHHHHHHHHHHH-----------HHc-cCC----cCChhhHHHHHhcccc-----HHHHHH
Confidence 9999987544 3899999988776542100 111 132 3454332333333332 677888
Q ss_pred HHHHHHHHHHHHHHHc-CCc-cccCC----C--------ccCCCceEEEEcCCCCC-HHHHHHHHHhhCCeEEccC-CC-
Q 017726 277 RHRRLGKATRLAVEAW-GLK-NCTQK----E--------EWFSDTVTAVIVPSHIN-SSEIVRRAWQRYNLSLGLG-LN- 339 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~~-~~~~~----~--------~~~~~~~~~~~~~~~~~-~~~l~~~L~~~~gv~v~~g-~~- 339 (367)
+..+++..+.+.|++. .++ +.-|. + ....+.++.|.+..+.+ ...|++.|+ -..+.+.-| ..
T Consensus 262 ~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~~~~~~~~f~~~L~-l~~~a~SlGg~eS 340 (392)
T d1gc0a_ 262 RHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQ-LFSRAVSLGDAES 340 (392)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHHCS-SSEECSCCSCSSC
T ss_pred HHHHHHHHHHHHHHhCCCccEEeeccccCCcccccccccccCCCcEEEEEEeCCHHHHHHHHHhCC-cceEeeccCCcCh
Confidence 9999999999999987 433 22221 1 11235678888832211 123344332 112222212 10
Q ss_pred ---------------------CCCCcEEEEeecCCCCHHHHHHhh
Q 017726 340 ---------------------KVAGKVFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 340 ---------------------~~~~~~iRi~~~~~~~~~~~~~~~ 363 (367)
...++.||+| .|-++.+|++.++
T Consensus 341 Li~~pa~~th~~~~~e~r~~~Gi~~~liRlS-VGlEd~eDLi~Dl 384 (392)
T d1gc0a_ 341 LAQHPASMTHSSYTPEERAHYGISEGLVRLS-VGLEDIDDLLADV 384 (392)
T ss_dssp EEECGGGTTTSSSCHHHHHHTTCCTTEEEEE-CCSSCHHHHHHHH
T ss_pred hhcCccccccccCCHHHHHHcCCCcCeEEEE-eeeCCHHHHHHHH
Confidence 1123579998 5778888877665
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.90 E-value=4.8e-21 Score=169.56 Aligned_cols=283 Identities=16% Similarity=0.131 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.+....+++.++.+-|.+. .++++||..|+..++.+++.+||+|++.+.-|.+.. +.....+.|+++..++..
T Consensus 62 nPT~~~LE~~la~LEgg~~---a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~-- 136 (397)
T d1y4ia1 62 NPTTDALEKKLAVLERGEA---GLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAG-- 136 (397)
T ss_dssp CHHHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT--
T ss_pred CHHHHHHHHHHHHHhCCcc---ceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCceEeeccCCC--
Confidence 4667899999999998654 456689999999999999999999999999877764 445677889999998754
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|++.++++++ ++||+|++.+|.||+..+.|+++|+++||+ +|+++++|.+.+.+.. ......|+|+++.|
T Consensus 137 ---d~~~~~~~i~----~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~--~gi~~vvDnT~atP~~-~~Pl~~GaDivihS 206 (397)
T d1y4ia1 137 ---KPEEIRAAMR----PETKVVYIETPANPTLSLVDIETVAGIAHQ--QGALLVVDNTFMSPYC-QQPLQLGADIVVHS 206 (397)
T ss_dssp ---SHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHH--TTCEEEEECTTTCTTT-CCGGGGTCSEEEEE
T ss_pred ---CHHHHHHhcC----CCCcEEEecCCcccceeecccHHHHHHhhc--CCceEEecCcccCccc-CcchhcCCCEEEEe
Confidence 7899999998 578999999999999999999999999999 9999999998764332 23345689999999
Q ss_pred CCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 199 SQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
.+|+++|... .|.++++++.+.+.+-... .+. .|. .++....+.+...++. +.-+++
T Consensus 207 ~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~-----------~~~-~G~----~l~p~~a~l~~rgl~T-----L~lRm~ 265 (397)
T d1y4ia1 207 VTKYINGHGDVIGGIIVGKQEFIDQARFVGL-----------KDI-TGG----CMSPFNAWLTLRGVKT-----LGIRME 265 (397)
T ss_dssp TTTTTTCSSCCCCEEEEECHHHHHHHHHTHH-----------HHT-TCC----CCCHHHHHHHHHHHTT-----HHHHHH
T ss_pred hhhhcCCCcceeeeccCCCHHHHHHHHHHHH-----------HhC-cCC----cCCHHHHHHHHcCcCc-----HHHHHH
Confidence 9999987644 3899999988765432100 111 122 2444322222222222 667788
Q ss_pred HHHHHHHHHHHHHHHc-CCc-cccCC----Cc--------cCCCceEEEEcCCCCCHHHHHHHHHhhCCeE---EccC-C
Q 017726 277 RHRRLGKATRLAVEAW-GLK-NCTQK----EE--------WFSDTVTAVIVPSHINSSEIVRRAWQRYNLS---LGLG-L 338 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~~-~~~~~----~~--------~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~---v~~g-~ 338 (367)
+..+++..+.+.|++. .++ +.-|. +. ...+.++.|.+. + ..+-++++.+...+. +.-| .
T Consensus 266 ~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~-~--~~~~~~~f~~~L~l~~~a~SlGg~ 342 (397)
T d1y4ia1 266 RHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIA-G--GLEAGRRMINSVELCLLAVSLGDT 342 (397)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEET-T--HHHHHHHHHHTCSSSEECSCCSCS
T ss_pred HHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEec-C--CHHHHHHHHHcCCccceeeccCcc
Confidence 9999999999999997 442 22221 11 114668888873 2 223233333332322 2112 1
Q ss_pred C-----C-----------------CCCcEEEEeecCCCCHHHHHHhh
Q 017726 339 N-----K-----------------VAGKVFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 339 ~-----~-----------------~~~~~iRi~~~~~~~~~~~~~~~ 363 (367)
. + ..++.||++ .|-++.+|++.++
T Consensus 343 eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRls-vGlEd~~DLi~Dl 388 (397)
T d1y4ia1 343 ETLIQHPASMTHSPVAPEERLKAGITDGLIRLS-VGLEDPEDIINDL 388 (397)
T ss_dssp SCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEE-CCSSCHHHHHHHH
T ss_pred cceeeCccccccccCCHHHHHHcCCCcCEEEEE-eccCCHHHHHHHH
Confidence 1 1 124579998 6888888777654
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.90 E-value=4.4e-23 Score=187.09 Aligned_cols=324 Identities=15% Similarity=0.081 Sum_probs=201.1
Q ss_pred CcccccCC-------CCCChHHHHHHHccCCCC--CCCCcHHHHHHHHHHHHHHHhc----CCCCceEEecCChhHH--H
Q 017726 9 KNHLFVPG-------PVHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFK----TTSGTPFLIPTTGTGA--W 73 (367)
Q Consensus 9 ~~~~~~~~-------p~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~----~~~~~~v~~~~ggt~a--l 73 (367)
+++++..| .+++++.|.+++.+.... ...|....+..++|+++++++. .......+++.+++++ +
T Consensus 27 ~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l 106 (394)
T d2ay1a_ 27 GKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQ 106 (394)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHH
T ss_pred CCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHH
Confidence 34566655 235567788877664221 2245545667788888888763 2222223444555544 4
Q ss_pred HHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhccCCCCccEEEEEecCCCcc
Q 017726 74 ESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATG 151 (367)
Q Consensus 74 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG 151 (367)
.+.+..+..+||.|++++|.|+.+. ..++..|.+++.++... .+..+.+++++...... ++++++++++||||||
T Consensus 107 ~~~~~~~~~~gd~V~~p~p~~~~y~--~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~p~NPTG 183 (394)
T d2ay1a_ 107 ALELARMANPDLRVFVSDPTWPNHV--SIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAK-KGDMVLLHGCCHNPTG 183 (394)
T ss_dssp HHHHHHHHCTTCCEEEEESCCHHHH--HHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCC-TTCEEEEESSSCTTTC
T ss_pred HHHHhhhcCCceEEEEecccccchH--HHHHHcCCEEEEecccchhcccccchhHHHHHhhcc-cCcEEEEeCCCCCCCC
Confidence 4455566799999999999776653 55778899999998753 34456777777766544 5678889999999999
Q ss_pred cccc---HHHHHHHHHhcCCCcEEEEeeeeccCceee---------ccccccceEEEecCCCcccCCCc--ceeeeeCHH
Q 017726 152 VTNN---LSKVRKLLDEYRHPALFLVDGVSSICAIDF---------RMDEWGIDVALTGSQKALSLPTG--MGIVCASPK 217 (367)
Q Consensus 152 ~~~~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~---------~~~~~~~d~~~~s~~K~~~g~~g--~g~~~~~~~ 217 (367)
.+++ +++|.++|++ ++++|++|++|....... ........+++.|++|.+. .+| +|++.+...
T Consensus 184 ~~~s~e~~~~l~~la~~--~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~-~~G~R~G~~~~~~~ 260 (394)
T d2ay1a_ 184 ANLTLDQWAEIASILEK--TGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFG-IYRERTGCLLALCA 260 (394)
T ss_dssp CCCCHHHHHHHHHHHHH--HTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTT-CGGGCEEEEEEECS
T ss_pred CCCCHHHHHHHHHHhhc--ceEEEEEeccchhhcccccccchhhhhhhhhccccccccccccccc-CCcccccchhhchh
Confidence 9997 6678889999 999999999997654321 0111123466667788774 334 688887766
Q ss_pred HHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHH--HHH---HhChHHHHHHHHHHHHHHHHHHHHc
Q 017726 218 ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALD--LIF---EEGLENVIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~--~~~---~~g~~~~~~~~~~~~~~l~~~L~~~ 292 (367)
.++....... ......... ....+...+ ......+. .+. ...++.+++++.++++.+.+.|+++
T Consensus 261 ~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 329 (394)
T d2ay1a_ 261 DAATRELAQG---------AMAFLNRQT-YSFPPFHGA-KIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDL 329 (394)
T ss_dssp SHHHHHHHHH---------HHHHHHHTT-TSSCCCHHH-HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhh---------hhHhhhccc-ccchhHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5544332100 000000011 111233221 11111111 111 1126677888899999999999987
Q ss_pred C----CccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecC-CCCHHHHHHhhhhc
Q 017726 293 G----LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNEVMFNFQLLFQ 366 (367)
Q Consensus 293 g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~l~~ 366 (367)
+ +.++.+ .++++.++.+ + ++++++|.+++||++.+| .||++.+ ..+..+...++|++
T Consensus 330 ~~~~~~~~~~~----~~G~F~~~~l----s-~~~~~~L~~~~~V~~~~g--------~Ri~~a~l~~~~i~~l~~ai~~ 391 (394)
T d2ay1a_ 330 SGSDRFGFVAE----HRGMFSRLGA----T-PEQVKRIKEEFGIYMVGD--------SRINIAGLNDNTIPILARAIIE 391 (394)
T ss_dssp HTSSTTTHHHH----CCSSEEECCC----C-HHHHHHHHHHHCEECCTT--------CEEEGGGCCTTTHHHHHHHHHH
T ss_pred CCCCceeeECC----CceeEEecCc----C-HHHHHHHHHhCCEEecCC--------CEEEecCCCHHHHHHHHHHHHH
Confidence 3 344444 4554544433 3 577899988999998875 3999766 44556777777765
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.90 E-value=7.7e-22 Score=181.07 Aligned_cols=291 Identities=12% Similarity=0.113 Sum_probs=204.0
Q ss_pred HHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC---CCC
Q 017726 44 TKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES---DWG 118 (367)
Q Consensus 44 ~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~---~~~ 118 (367)
..++..++.+++|.+... ..+..|++.++.+++.+. ..+++.|+++...|++.. +.+...|.+.+.++. +..
T Consensus 115 ~~~~~~~~~~~~g~~~~~-~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~--k~~~~~g~~~~~v~~~~~~~~ 191 (434)
T d2z67a1 115 TNKILESFFKQLGLNVHA-IATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPI--KAVSFVGMNMRLVETVLDGDR 191 (434)
T ss_dssp HHHHHHHHHHHTTCCCEE-EEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH--HHHHHTTCEEEEECCEEETTE
T ss_pred HHHHHHHHHHhcCCCcce-eecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHH--HHHHHhCCcceEEEeecCCCc
Confidence 445566677888887632 444455556666666553 237889999999888753 567778998888764 344
Q ss_pred CCCCHHHHHHHHhccC-CCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccc
Q 017726 119 EGAKLDVLASKLAADT-AHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGI 192 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~-~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~ 192 (367)
+.+|+++|++++++++ ..++.+|+.+++++++|.+.|+++|.++|++ +|+++++|++++.+.. +......++
T Consensus 192 ~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~--~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~ 269 (434)
T d2z67a1 192 VYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICEN--YDIPHIINGAYAIQNNYYLEKLKKAFKYRV 269 (434)
T ss_dssp EECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHH--HTCCEEEECTTTTTCHHHHHHHHHHHTSCC
T ss_pred cCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHH--hCCeEEEeccchhhhhhccccccccccCCc
Confidence 6799999999998742 1356788999999999999999999999999 9999999999976542 122345589
Q ss_pred eEEEecCCCcccCCCcceeeeeCH-HHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhCh
Q 017726 193 DVALTGSQKALSLPTGMGIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGL 271 (367)
Q Consensus 193 d~~~~s~~K~~~g~~g~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~ 271 (367)
|++++|+||++++|.|.|+++.++ ..++++.... +++.+......+.+++..+...|+
T Consensus 270 D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~a~l~~~~~~g~ 328 (434)
T d2z67a1 270 DAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSY---------------------PGRASATPVVNTLVSLLSMGSKNY 328 (434)
T ss_dssp SEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTS---------------------CSCBCSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEcCccccccCCCccccccCcHHHHHHHHhhc---------------------ccccccchHHHHHHHHHHHHHhcc
Confidence 999999999999899888887654 4455554321 111222334567778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCC---------
Q 017726 272 ENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGL--------- 338 (367)
Q Consensus 272 ~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~--------- 338 (367)
+++.++..++++++++.|+++ |..+..+ .....+.+.. +.+..++...|.++ ||......
T Consensus 329 ~~~~~~~~~~a~~l~~~L~~l~~~~g~~ll~~----~~~~~~~~~~--~~~~~~l~~~L~~~-gI~g~~v~~~l~~~g~~ 401 (434)
T d2z67a1 329 LELVKNQKNSKKLLDELLNDLSKKTGGKFLDV----ESPIASCISV--NSDPVEIAAKLYNL-RVTGPRGIKKTDHFGNC 401 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCC----CCSSEEEEEC--SSCHHHHHHHHHHT-TEESCEEECTTCHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCceecCC----CCCceeeeec--CCCHHHHHHHHHHc-CCeeeehhhhccccCee
Confidence 889999999999999999874 5565554 2222343443 45788999989765 88643211
Q ss_pred --CCCCCcEEEEeecCCCC--HHHHHHhhhhcC
Q 017726 339 --NKVAGKVFRIGHLGHLN--EVMFNFQLLFQL 367 (367)
Q Consensus 339 --~~~~~~~iRi~~~~~~~--~~~~~~~~l~~~ 367 (367)
......++|++..-.++ +.|.+.+.|+++
T Consensus 402 ~~~~~~~~~l~~~~s~~~T~edID~~i~~L~kI 434 (434)
T d2z67a1 402 YLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKI 434 (434)
T ss_dssp CSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred eecccCCCeEEEecCCCCCHHHHHHHHHHHhcC
Confidence 12234679998765554 455666666553
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.90 E-value=1.2e-21 Score=174.06 Aligned_cols=312 Identities=14% Similarity=0.074 Sum_probs=211.8
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCC--------CCCc----HHHHHHHHHHHHHHHhcCCCCceE--EecCChhHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDY--------RSPA----VPALTKTLLEDIKKIFKTTSGTPF--LIPTTGTGAWE 74 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~--------~~~~----~~~~~~~~~~~la~~~~~~~~~~v--~~~~ggt~al~ 74 (367)
+.+.++|+-.-+++.|++++.....+. +.|. ...+..-++++..++|+++.+++- +=.-||+.|+.
T Consensus 28 ~~l~LiaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~ 107 (463)
T d2a7va1 28 RGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANL 107 (463)
T ss_dssp HSEECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHH
T ss_pred cCeeEeccCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHH
Confidence 456788888899999999998754321 1121 233344457888999999976421 45568899999
Q ss_pred HHHHccCCCCCeEEEEeCCcchHHHHH------HHHHhCC--ceEEEeCC-CCCCCCHHHHHHHHhccCCCCccEEEEEe
Q 017726 75 SALTNTLSPGDRIISFLIGQFSLLWID------QQQRLNF--NVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIVH 145 (367)
Q Consensus 75 ~~~~~~~~~gd~vl~~~~~~~~~~~~~------~~~~~g~--~~~~v~~~-~~~~~d~e~l~~~i~~~~~~~~~lv~~~~ 145 (367)
.++.++++|||+|+..+..+.++.... -....|. +.....++ .++.+|.+++++.+.+ .+||+|++..
T Consensus 108 av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~---~kPklIi~G~ 184 (463)
T d2a7va1 108 AVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARL---FRPRLIIAGT 184 (463)
T ss_dssp HHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHH---HCCSEEEECC
T ss_pred HHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhh---cCCceEEecc
Confidence 999999999999998877554443111 1111232 23333444 3467999999999987 5789998875
Q ss_pred cCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCc-----eeeccccccceEEEecCCCcccCCCcceeeeeCHH---
Q 017726 146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICA-----IDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPK--- 217 (367)
Q Consensus 146 ~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~-----~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~--- 217 (367)
-.+| ...|.++++++|++ .|+++++|.+|..|. .+.++. ++|++++|+||+|.||+| |++..+++
T Consensus 185 S~y~--r~~d~~~~reIad~--vga~l~~D~aH~aGLIA~g~~~sP~~--~aDvvt~tTHKTlrGPrg-GiIl~~~~~~~ 257 (463)
T d2a7va1 185 SAYA--RLIDYARMREVCDE--VKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGARS-GLIFYRKGVKA 257 (463)
T ss_dssp SSCC--SCCCHHHHHHHHHH--TTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGCSCSC-EEEEEECSEEE
T ss_pred cccc--cccCHHHHHHHhhc--ccceEEechhhhhHHhhhhhhcChhh--hhhhhhchhhhhhcCCCc-eEEEEcccccc
Confidence 4433 46799999999999 999999999996543 344443 579999999999999997 88887763
Q ss_pred ------------HHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Q 017726 218 ------------ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKAT 285 (367)
Q Consensus 218 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l 285 (367)
+.+++.....+ |. .+.+....++++..++....+...++-.++..+|++.|
T Consensus 258 ~~~~~~~~~~~~~~~~i~~avFP---------------g~--qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~L 320 (463)
T d2a7va1 258 VDPKTGREIPYTFEDRINFAVFP---------------SL--QGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAM 320 (463)
T ss_dssp EETTTEEEEECCCHHHHHHHHTT---------------TT--CCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred cccccCccchhHHHHHhhhhcCc---------------cc--chhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 33333321111 11 22477778889999988877655788899999999999
Q ss_pred HHHHHHcCCccccCCCccCCCceEEEEc-CCCCCHHHHHHHHHhhCCeEEc----cCC-CCCCCcEEEEeec
Q 017726 286 RLAVEAWGLKNCTQKEEWFSDTVTAVIV-PSHINSSEIVRRAWQRYNLSLG----LGL-NKVAGKVFRIGHL 351 (367)
Q Consensus 286 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~~gv~v~----~g~-~~~~~~~iRi~~~ 351 (367)
.+.|.+.|+.+++.. ..++++.+++ +.+.+..+..+.| ++.||.+- |+. .+..++.||||+.
T Consensus 321 a~~L~~~G~~vv~gg---TdnHlvlvdl~~~~~~G~~ae~~L-e~~gI~~Nkn~iP~D~~~~~~sGiRiGT~ 388 (463)
T d2a7va1 321 ADALLERGYSLVSGG---TDNHLVLVDLRPKGLDGARAERVL-ELVSITANKNTCPGDRSAITPGGLRLGAP 388 (463)
T ss_dssp HHHHHHTTCEEGGGS---CSSSEEEEECTTTTCCHHHHHHHH-HHTTEECEEECCTTCCCSSSCSEEEEESH
T ss_pred HHHHHhCCCeeecCC---CCCceeeeeccccCCCHHHHHHHH-HhccCccCCccCCCCCCCCCCCceEeCCH
Confidence 999999999998743 3455677777 3467777777777 56699885 221 1233456999973
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.89 E-value=5.3e-21 Score=170.41 Aligned_cols=312 Identities=14% Similarity=0.084 Sum_probs=222.2
Q ss_pred CcccccCCCCCChHHHHHHHccCCCCC--------CCC---cH-HHHHHHHHHHHHHHhcCCCC--ceEEecCChhHHHH
Q 017726 9 KNHLFVPGPVHIPDQVIRAMNRNNEDY--------RSP---AV-PALTKTLLEDIKKIFKTTSG--TPFLIPTTGTGAWE 74 (367)
Q Consensus 9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~--------~~~---~~-~~~~~~~~~~la~~~~~~~~--~~v~~~~ggt~al~ 74 (367)
+.+.++|.-.-+++.|++++.....+. +.| .+ ..+..-+.++..++||+++. ..-+=.-||+.|+.
T Consensus 32 ~~l~LIaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~ 111 (470)
T d1rv3a_ 32 VGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANF 111 (470)
T ss_dssp SSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHH
T ss_pred cCceEecCCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHH
Confidence 457788888899999999998854321 122 23 34444466778999998743 22255568999999
Q ss_pred HHHHccCCCCCeEEEEeCCcchHHHHH--------HHHHhCCceEEEeCCCC-CCCCHHHHHHHHhccCCCCccEEEEEe
Q 017726 75 SALTNTLSPGDRIISFLIGQFSLLWID--------QQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVH 145 (367)
Q Consensus 75 ~~~~~~~~~gd~vl~~~~~~~~~~~~~--------~~~~~g~~~~~v~~~~~-~~~d~e~l~~~i~~~~~~~~~lv~~~~ 145 (367)
.++.++++|||+|+..+..+.++.... -......+....+++++ +.+|.|++++...+ .+||+|++..
T Consensus 112 av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~---~kPklIi~G~ 188 (470)
T d1rv3a_ 112 AVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARL---FHPKLIIAGT 188 (470)
T ss_dssp HHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH---HCCSEEEECC
T ss_pred HHHHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHh---hCcceEeech
Confidence 999999999999999876443332100 01112356667777754 68999999999887 5789998875
Q ss_pred cCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCc-----eeeccccccceEEEecCCCcccCCCcceeeeeCHH---
Q 017726 146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICA-----IDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPK--- 217 (367)
Q Consensus 146 ~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~-----~~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~--- 217 (367)
-.+ -...|.++++++|++ .|+++++|.+|-.|. .+-++. ++|++++|+||+|.||+| |++..+++
T Consensus 189 S~y--~r~~d~~~~reIad~--vga~l~~D~aH~aGLIA~g~~~sPl~--~aDvvt~tTHKtlrGPrg-GiI~~~~~~~~ 261 (470)
T d1rv3a_ 189 SCY--SRNLDYGRLRKIADE--NGAYLMADMAHISGLVVAGVVPSPFE--HCHVVTTTTHKTLRGCRA-GMIFYRRGVRS 261 (470)
T ss_dssp SSC--CSCCCHHHHHHHHHH--TTCEEEEECTTTHHHHHHTSSCCGGG--TCSEEEEESSGGGCCCSC-EEEEEECSBCC
T ss_pred hhc--cccCCHHHHHHHHhc--cCCeEEecchhhhhhccccccCChhh--eeeeeeeehhhhccCCcc-eEEEEcccccc
Confidence 433 346799999999999 999999999996543 344553 579999999999999997 88887654
Q ss_pred ------------HHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Q 017726 218 ------------ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKAT 285 (367)
Q Consensus 218 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l 285 (367)
+.+++.....+ |. .+.+....++++..++........++..++...|++.|
T Consensus 262 ~~~~~~~~~~~~~~~~i~~avFP---------------g~--qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~L 324 (470)
T d1rv3a_ 262 VDPKTGKEILYNLESLINSAVFP---------------GL--QGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRAL 324 (470)
T ss_dssp -------CCBCCHHHHHHHHHTT---------------TT--CCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHhhhcCc---------------cc--cccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 33333321111 11 22477778888888888876544688889999999999
Q ss_pred HHHHHHcCCccccCCCccCCCceEEEEc-CCCCCHHHHHHHHHhhCCeEEc----cCC-CCCCCcEEEEeec
Q 017726 286 RLAVEAWGLKNCTQKEEWFSDTVTAVIV-PSHINSSEIVRRAWQRYNLSLG----LGL-NKVAGKVFRIGHL 351 (367)
Q Consensus 286 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~~gv~v~----~g~-~~~~~~~iRi~~~ 351 (367)
.+.|.+.|+.++... ..++++.+++ +.+++..+..+.| ++.||.+- |+. .+..++.+|||+.
T Consensus 325 a~~L~~~G~~v~~gg---TdnHlvlvdl~~~g~~g~~ae~~L-e~~gI~~Nkn~iP~D~~~~~~sGiRiGT~ 392 (470)
T d1rv3a_ 325 SAALVELGYKIVTGG---SDNHLILVDLRSKGTDGGRAEKVL-EACSIACNKNTCPGDKSALRPSGLRLGTP 392 (470)
T ss_dssp HHHHHHTTCEEGGGS---CSSSEEEEEGGGGTCCHHHHHHHH-HHTTEECEEECCSSCSCTTSCCEEEEECH
T ss_pred HHHHHhCCceeccCC---CCCceEEEeecccCCcHHHHHHHH-HHcCcEECCCcCCCCCCCCCCCeeEecCH
Confidence 999999999998753 3455677777 3367787776666 67799885 332 1233567999974
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.88 E-value=8e-22 Score=181.61 Aligned_cols=263 Identities=13% Similarity=0.097 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCChhHHHH-HHHHc---cCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeC--
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWE-SALTN---TLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES-- 115 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~-~~~~~---~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-- 115 (367)
.+..++.+++++++|.+.....+++++||++.. +++.+ ...+++.|+++...|.+. ...+...|.+.+.|+.
T Consensus 94 ~le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~--~~a~~~~g~~~~~v~~~~ 171 (445)
T d3bc8a1 94 KITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSC--FKSMVTAGFEPVVIENVL 171 (445)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHH--HHHHHHTTCEEEEECCEE
T ss_pred HHHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHH--HHHHHHcCCeeEEEEeec
Confidence 345567788999999987666788888885444 33333 245678899998888775 3667889999888853
Q ss_pred -CCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceee------ccc
Q 017726 116 -DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF------RMD 188 (367)
Q Consensus 116 -~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~------~~~ 188 (367)
++++.+|++++++++++...+++.+|++++++|++|.+.|+++|.++|++ +|+++++|++++.+.... ...
T Consensus 172 ~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~--~~~~l~vD~a~~~~~~~~~~~~~~~~~ 249 (445)
T d3bc8a1 172 EGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICAN--YDIPHVVNNAYGLQSSKCMHLIQQGAR 249 (445)
T ss_dssp ETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHH--HTCCEEEECTTTTTCHHHHHHHHHHHH
T ss_pred cCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHH--hCCcEEEEccchhhhhhccccchhccC
Confidence 45678999999999987543568899999999999999999999999999 999999999998765321 222
Q ss_pred cccceEEEecCCCcccCCCcceeeeeCHHH-HHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHH
Q 017726 189 EWGIDVALTGSQKALSLPTGMGIVCASPKA-LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF 267 (367)
Q Consensus 189 ~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~ 267 (367)
..++|++++|+||++.+|.|.|+++.++.. .+.+..... + ..+......++.++..+.
T Consensus 250 ~~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~~~~----------------~-----~~~~~~~~~~~~~~~~~g 308 (445)
T d3bc8a1 250 VGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYP----------------G-----RASASPSLDVLITLLSLG 308 (445)
T ss_dssp HSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSC----------------S-----CBCSHHHHHHHHHHHHHH
T ss_pred cCCcceEEecCccccccCCCCceeeeCChHHHHHHHHHHh----------------h-----cccCcchHHHHHHHHHHh
Confidence 235899999999999989988888776544 444432110 1 111222245666777777
Q ss_pred HhChHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCCCceEEEEc--C---CCCCHHHHHHHHHhhCCeE
Q 017726 268 EEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFSDTVTAVIV--P---SHINSSEIVRRAWQRYNLS 333 (367)
Q Consensus 268 ~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~l~~~L~~~~gv~ 333 (367)
..+.....+....+++++.+.|+++ |..+..... .....++.+ . ...+..++...|.+. +|.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~---~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-gI~ 379 (445)
T d3bc8a1 309 CSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPH---NPISLAMTLKTIDGHHDKAVTQLGSMLFTR-QVS 379 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTT---CSSEEEEECTTTSSSSSCHHHHHHHHHHHT-TCC
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCC---CCcceEEEeeeccccCCCCHHHHHHHHHHc-CCC
Confidence 7778888888888999999888774 444443211 111222332 1 123455677777644 663
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.88 E-value=9.3e-21 Score=164.98 Aligned_cols=233 Identities=15% Similarity=0.133 Sum_probs=170.7
Q ss_pred HHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCCCCCCH
Q 017726 46 TLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKL 123 (367)
Q Consensus 46 ~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~ 123 (367)
.+++.++++-|... .+.++||..|+..++.+++++||+|+++..-|.+.+ +....+..|+++..++.. |+
T Consensus 2 aLE~~la~Leg~~~---a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~-----d~ 73 (331)
T d1pffa_ 2 ALEGKIAKLEHAEA---CAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA-----VP 73 (331)
T ss_dssp HHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-----ST
T ss_pred HHHHHHHHHhCCCe---EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc-----ch
Confidence 57888999988654 466689999999999999999999999988776654 456678899999998765 78
Q ss_pred HHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHH-HhcCCCcEEEEeeeeccCceeeccccccceEEEecCCCc
Q 017726 124 DVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLL-DEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKA 202 (367)
Q Consensus 124 e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~-~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s~~K~ 202 (367)
+.++++++ +++++|++.+|.||+..+.|++++.+++ ++ +|+++++|.+.+.+. .....+.|+|+++.|.+|+
T Consensus 74 ~~~~~~i~----~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~--~~~~~vVDnT~atp~-~~~pl~~GaDiVv~S~TKy 146 (331)
T d1pffa_ 74 GNIEKHLK----PNTRIVYFETPANPTLKVIDIEDAVKQARKQ--KDILVIVDNTFASPI-LTNPLDLGVDIVVHSATKY 146 (331)
T ss_dssp THHHHTCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHTTS--SSCEEEEECTTTHHH-HCCGGGGTCSEEEEETTTT
T ss_pred hhHhhhcc----cccceeeeecccccccccccchhhhhhhhcc--cCceEEeeccccccc-cccccccCCCEEEecchhh
Confidence 89999988 5779999999999999999999999885 56 899999998876322 2234456899999999999
Q ss_pred ccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHH
Q 017726 203 LSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRR 280 (367)
Q Consensus 203 ~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~ 280 (367)
++|... .|.++.+++...+......... .|. .++......+...++. +..+.++..+
T Consensus 147 ~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~------------~G~----~l~p~~a~ll~rgl~T-----l~~Rm~~~~~ 205 (331)
T d1pffa_ 147 INGHTDVVAGLVCSRADIIAKVKSQGIKDI------------TGA----IISPHDAWLITRGTLT-----LDMRVKRAAE 205 (331)
T ss_dssp TSSSSSCCCEEEEECHHHHHHHHHTCCCCC------------CCC----CCCHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred cCCCCccccccccccccchhhhhhhhhhhc------------cCC----CCCHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 987644 3888898887655443211100 021 3444333333334443 5677889999
Q ss_pred HHHHHHHHHHHc-CC-ccccCC----Cc--------cCCCceEEEEcC
Q 017726 281 LGKATRLAVEAW-GL-KNCTQK----EE--------WFSDTVTAVIVP 314 (367)
Q Consensus 281 ~~~~l~~~L~~~-g~-~~~~~~----~~--------~~~~~~~~~~~~ 314 (367)
|+..+.+.|++. .+ ++.-|. +. ...+.++.|.+.
T Consensus 206 nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~ 253 (331)
T d1pffa_ 206 NAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD 253 (331)
T ss_dssp HHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS
T ss_pred HHHHHHHhhhhCCcEEeeccccccCccHHHHHhhcccccCcccceeec
Confidence 999999999997 44 332221 11 124567888883
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.88 E-value=1e-20 Score=167.14 Aligned_cols=213 Identities=15% Similarity=0.128 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.+....+++.++.+-|.+. .+.++||..|+. ++.+++.+||+|++..+-|.+.. +.......|+++..++..
T Consensus 48 nPt~~~le~~la~LE~~~~---a~~fsSGMaAis-all~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~-- 121 (380)
T d1ibja_ 48 NPTRDALESLLAKLDKADR---AFCFTSGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT-- 121 (380)
T ss_dssp CHHHHHHHHHHHHHHTCSE---EEEESSHHHHHH-HHHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT--
T ss_pred ChHHHHHHHHHHHHcCCce---EEehhhHHHHHH-HHHHhhCCCCEEEEEecccccccchhhhhhccccccccccCcc--
Confidence 3567799999999998654 456688899986 56678999999999988776664 445566789998888754
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
+.++++++++ +++|+|++.+|.||+..+.|+++|+++||+ +|+++++|.+.+.+.. ....+.|+|+++.|
T Consensus 122 ---~~~~~~~ai~----~~t~li~~EtpsNP~l~v~Di~~i~~iA~~--~g~~~vVDnT~atP~~-~~Pl~~GaDiVvhS 191 (380)
T d1ibja_ 122 ---KLDEVAAAIG----PQTKLVWLESPTNPRQQISDIRKISEMAHA--QGALVLVDNSIMSPVL-SRPLELGADIVMHS 191 (380)
T ss_dssp ---SHHHHHHHCC----SSEEEEEECSSCTTTCCCCCHHHHHHHHHT--TTCEEEEECTTTCTTT-CCGGGTTCSEEEEE
T ss_pred ---hHHHHHHHhc----cCccEEEeccccccccccccHHHHHHHHHH--cCCeEEeecccccccc-ccccccCCCEEEec
Confidence 7899999987 577999999999999999999999999999 9999999999754332 23335689999999
Q ss_pred CCCcccCCCc--ceeeeeCHH-HHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHH
Q 017726 199 SQKALSLPTG--MGIVCASPK-ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~ 275 (367)
.+|+++|... .|.++.+++ +.+++... .+ ..|. .++......+...++. +..+.
T Consensus 192 ~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~-------------~~-~~G~----~l~p~~a~ll~rgl~T-----l~lRm 248 (380)
T d1ibja_ 192 ATKFIAGHSDVMAGVLAVKGEKLAKEVYFL-------------QN-SEGS----GLAPFDCWLCLRGIKT-----MALRI 248 (380)
T ss_dssp TTTTTTCSSCCCCEEEEECSHHHHHHHHHH-------------HH-HTTC----BCCHHHHHHHHHHHTT-----HHHHH
T ss_pred ccceeccccCccccccccchhhHHHHHHhh-------------cc-ccCC----cCCHHHHHHHHhcchh-----hhhhH
Confidence 9999987644 377776644 44444321 11 1232 2444332223322222 67788
Q ss_pred HHHHHHHHHHHHHHHHc
Q 017726 276 ERHRRLGKATRLAVEAW 292 (367)
Q Consensus 276 ~~~~~~~~~l~~~L~~~ 292 (367)
++..+++..+.+.|++.
T Consensus 249 ~~~~~nA~~lA~~L~~h 265 (380)
T d1ibja_ 249 EKQQENARKIAMYLSSH 265 (380)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999999987
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.88 E-value=6.6e-20 Score=162.48 Aligned_cols=217 Identities=16% Similarity=0.139 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.+....+++.++++.|... .+.++||..|+..++.+++.+||+|++...-|.+.. +.......|+++..++..
T Consensus 66 nPt~~~LE~~la~LEgg~~---a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~-- 140 (398)
T d1qgna_ 66 NPTTVVLEEKISALEGAES---TLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA-- 140 (398)
T ss_dssp CHHHHHHHHHHHHHHTCSE---EEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS--
T ss_pred ChHHHHHHHHHHHHhCCce---EEEecCcchHHHHHHhhcccccccccccccccchhhhhhccccccccccccccccc--
Confidence 4667889999999998654 566699999999999999999999999998777764 445667789988888643
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
+.++.++.+.. +++++|++.+|.||+..+.|+++|.++||+ +|++++||.+.+-+. .....+.|+|+++.|
T Consensus 141 ---~~~~~~~~~~~---~~t~~v~~EspsNP~l~v~Di~~ia~ia~~--~g~~~vVDnT~atP~-~~~Pl~~GaDiVihS 211 (398)
T d1qgna_ 141 ---DVGALELALNQ---KKVNLFFTESPTNPFLRCVDIELVSKLCHE--KGALVCIDGTFATPL-NQKALALGADLVLHS 211 (398)
T ss_dssp ---CHHHHHHHHHH---SCEEEEEEESSCTTTCCCCCHHHHHHHHHH--TTCEEEEECTTTCTT-TCCTTTTTCSEEEEC
T ss_pred ---chhhhhhhhcc---ccceEEEccCccccccccchHHHHHHHHhh--cCCEEEecceeeccc-cCCchhhCCCEEEEe
Confidence 44544443332 578999999999999999999999999999 999999999865432 234445689999999
Q ss_pred CCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 199 SQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
.+|+++|... .|.+..++++++++... .+ ..|. .++......+...++ -+.-+.+
T Consensus 212 ~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~-------------~~-~~G~----~l~p~~a~ll~rgl~-----TL~lRm~ 268 (398)
T d1qgna_ 212 ATKFLGGHNDVLAGCISGPLKLVSEIRNL-------------HH-ILGG----ALNPNAAYLIIRGMK-----TLHLRVQ 268 (398)
T ss_dssp TTTTTTCSSSCCCEEEEECHHHHHHHHHH-------------HH-HHCC----CCCHHHHHHHHHHGG-----GHHHHHH
T ss_pred chhhcCcccceeehhhcchhhhhhhhhhh-------------cc-cCCC----cCCHHHHHHHHhcch-----HHHHHHH
Confidence 9999987644 38888888887766532 11 1132 244432222222222 2677888
Q ss_pred HHHHHHHHHHHHHHHc-CC
Q 017726 277 RHRRLGKATRLAVEAW-GL 294 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~ 294 (367)
+..+++..+.+.|++. .+
T Consensus 269 ~~~~nA~~lA~~L~~hp~V 287 (398)
T d1qgna_ 269 QQNSTALRMAEILEAHPKV 287 (398)
T ss_dssp HHHHHHHHHHHHHHTCTTE
T ss_pred HHHHHHHHHHHHHHhCCCe
Confidence 9999999999999997 44
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.88 E-value=2.6e-22 Score=181.54 Aligned_cols=279 Identities=9% Similarity=-0.042 Sum_probs=173.9
Q ss_pred HHHHHHHHHHhc----C-CCCceEEecCChhHHHHHHHHcc--------CCCCCeEEEEeCCcchHHHHHHHHHhCCceE
Q 017726 45 KTLLEDIKKIFK----T-TSGTPFLIPTTGTGAWESALTNT--------LSPGDRIISFLIGQFSLLWIDQQQRLNFNVD 111 (367)
Q Consensus 45 ~~~~~~la~~~~----~-~~~~~v~~~~ggt~al~~~~~~~--------~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~ 111 (367)
.++++.|++++. + .++..|++++|+++++++++.++ +.|||+|+++.|.|..+. ..++..+.+..
T Consensus 103 ~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~--~~~~~~~~~~~ 180 (425)
T d2hoxa1 103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFR--EQTKYFDKKGY 180 (425)
T ss_dssp HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHH--HHHHHSCBTTE
T ss_pred HHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHH--HHHHHcCCCCC
Confidence 467777776653 2 23345999999999999999887 578999999999555443 44666776555
Q ss_pred EEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeecccccc
Q 017726 112 VVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWG 191 (367)
Q Consensus 112 ~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~ 191 (367)
.++ +|.+.++++++ ++++++++|+||||||.+.. ...+++.+|+|++|.......-.....
T Consensus 181 ~~~------~D~~~~~~~~~----~~~~ii~l~sPnNPtG~l~~---------~v~~~~~~I~DEaY~~~~f~~~~~~~~ 241 (425)
T d2hoxa1 181 VWA------GNAANYVNVSN----PEQYIEMVTSPNNPEGLLRH---------AVIKGCKSIYDMVYYWPHYTPIKYKAD 241 (425)
T ss_dssp EEE------EEGGGGTTCSC----GGGEEEEEESSCTTTCCCCC---------CSSTTCEEEEECTTCSTTTSCCCSCBC
T ss_pred ccC------CCHHHHHhhCC----CCceEEEEECCCCCCcchhh---------hhhhCCEEEEeccccCccccchhhhcC
Confidence 443 46777776666 47799999999999998631 123789999999985432211112234
Q ss_pred ceEEEecCCCcccCCCc--ceeeeeCHH-HHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHH
Q 017726 192 IDVALTGSQKALSLPTG--MGIVCASPK-ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFE 268 (367)
Q Consensus 192 ~d~~~~s~~K~~~g~~g--~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~ 268 (367)
.++++.|+||.++ .+| +|+++++++ +.+++.... .+ . ...++.....+..++++....
T Consensus 242 ~~Ivl~S~SK~fg-laGlRiGw~i~~~~~i~~~~~~~~-------------~~--~---~~~vs~~~Q~aa~~aL~~~~~ 302 (425)
T d2hoxa1 242 EDILLFTMSKFTG-HSGSRFGWALIKDESVYNNLLNYM-------------TK--N---TEGTPRETQLRSLKVLKEVVA 302 (425)
T ss_dssp CSEEEEEHHHHTS-CGGGCCEEEEECCHHHHHHHHHHH-------------HH--H---TSSCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCHHhcc-CcchheeeEEeCCHHHHHHHHHhh-------------cc--C---cccCCHHHHHHHHHHhhccHH
Confidence 6899999999984 655 699777654 445554221 00 0 112444333444444443211
Q ss_pred h---------C-hHHHHHHHHHHHHHHHHHHHHcCCcccc--CCCc---------cCCCceEEEEcCCCCCHHHHHHHHH
Q 017726 269 E---------G-LENVIERHRRLGKATRLAVEAWGLKNCT--QKEE---------WFSDTVTAVIVPSHINSSEIVRRAW 327 (367)
Q Consensus 269 ~---------g-~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~---------~~~~~~~~~~~~~~~~~~~l~~~L~ 327 (367)
. . .+..++.++++.+.+.+.|++.+..... +.+. .....+.+++.. .+..+.+..+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~--~~~~~~~~~lL 380 (425)
T d2hoxa1 303 MVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCE--WEEDKDCYQTF 380 (425)
T ss_dssp HHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEEC--SGGGCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCC--CChHHHHHHHH
Confidence 0 1 4556677788888888888887422211 1111 012334566663 23334445555
Q ss_pred hhCCeEEccCCCC-CCCcEEEEeecCCCCHHHHHHhhhh
Q 017726 328 QRYNLSLGLGLNK-VAGKVFRIGHLGHLNEVMFNFQLLF 365 (367)
Q Consensus 328 ~~~gv~v~~g~~~-~~~~~iRi~~~~~~~~~~~~~~~l~ 365 (367)
+++||.+++|..+ ..++++||++....+..+...+.|+
T Consensus 381 ~e~gI~v~pGs~FG~~~~yvRisl~~~~e~ld~~l~rL~ 419 (425)
T d2hoxa1 381 QNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLK 419 (425)
T ss_dssp HHTTEECEEGGGGTSCTTEEEEECSSCHHHHHHHHHHHH
T ss_pred HhCCEEEEechhcCCCCCEEEEEecCCHHHHHHHHHHHH
Confidence 6779999998554 3457999997665555455555554
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=1.3e-19 Score=159.92 Aligned_cols=214 Identities=19% Similarity=0.120 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.+....+++.++++-|.+. .+.++||..|+..++.+++.+||.|++.+.-|.+.. +.......|.++..++..
T Consensus 49 nPt~~~le~~la~LEgg~~---a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~-- 123 (384)
T d1cs1a_ 49 NPTRDVVQRALAELEGGAG---AVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG-- 123 (384)
T ss_dssp CHHHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTT--
T ss_pred CHHHHHHHHHHHHHhCCCc---eEEecChHHHHHHHHhhcccccceecccccccchhhhhhhhhhcccccccccccCC--
Confidence 4667899999999998654 566699999999999999999999999988776654 445666678887777643
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|.+.+++++. ++|++|++.+|.||+..+.|+++|.++||+ +|++++||.+.+.+.. ....+.|+|+++.|
T Consensus 124 ---d~~~~~~~~~----~~t~~v~~EspsNP~l~v~Di~~i~~ia~~--~g~~~vVDNT~atP~~-~~Pl~~GaDiVvhS 193 (384)
T d1cs1a_ 124 ---DEQALRAALA----EKPKLVLVESPSNPLLRVVDIAKICHLARE--VGAVSVVDNTFLSPAL-QNPLALGADLVLHS 193 (384)
T ss_dssp ---CHHHHHHHHH----TCCSEEEEECSCTTTCCCCCHHHHHHHHHH--TTCEEEEECTTTCTTT-CCGGGGTCSEEEEE
T ss_pred ---CHHHHHhhcc----ccccEEEEeccccccceeccHHHHhhhhhh--cCcEEEEeccccCccc-ccccccCCCEEEEc
Confidence 7899999998 567999999999999999999999999999 9999999998754332 23345689999999
Q ss_pred CCCcccCCCc--ceeeeeCH-HHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHH
Q 017726 199 SQKALSLPTG--MGIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~ 275 (367)
.+|+++|... .|+++.+. .+.+++... +...|. .++....+.+...++. +.-+.
T Consensus 194 ~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~--------------~~~~G~----~~~p~~a~ll~rgL~T-----L~lRm 250 (384)
T d1cs1a_ 194 CTKYLNGHSDVVAGVVIAKDPDVVTELAWW--------------ANNIGV----TGGAFDSYLLLRGLRT-----LVPRM 250 (384)
T ss_dssp TTTTTTCSSCCCCEEEEESSHHHHHHHHHH--------------HHHHTC----BCCHHHHHHHHHHHTT-----HHHHH
T ss_pred cccccccCCCcccccccCCchhhhhhhhhh--------------hhhhhh----ccccccHHHHhhccch-----hHHHH
Confidence 9999987644 37777754 433443321 111132 2444322222222222 67788
Q ss_pred HHHHHHHHHHHHHHHHc
Q 017726 276 ERHRRLGKATRLAVEAW 292 (367)
Q Consensus 276 ~~~~~~~~~l~~~L~~~ 292 (367)
++..+++..+.+.|++.
T Consensus 251 ~~~~~nA~~lA~~L~~h 267 (384)
T d1cs1a_ 251 ELAQRNAQAIVKYLQTQ 267 (384)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcccC
Confidence 89999999999999987
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=6.7e-20 Score=162.65 Aligned_cols=285 Identities=12% Similarity=0.155 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.+....+++.++++-|... .+.++||..|+..++.+++.+||+|++...-|.+.. +...+...|+++..++..
T Consensus 57 nPt~~~le~~la~LEg~~~---a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~-- 131 (391)
T d1cl1a_ 57 TLTHFSLQQAMCELEGGAG---CVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL-- 131 (391)
T ss_dssp CHHHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT--
T ss_pred ChhHHHHHHHHHHHhCCcc---EEEeccccceeeehhhcccCCCCeEEEecccccchhhhhhhcccccccccccccCc--
Confidence 4667899999999998654 566699999999999999999999999988777664 445567789999988754
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|.++++++++ +++++|++.+|.||+..+.|+++++++|+++.+|+++++|.+.+.+.. .+..+.|+|+++.|
T Consensus 132 ---d~~~~~~~i~----~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~-~~Pl~~GaDivvhS 203 (391)
T d1cl1a_ 132 ---IGADIVKHLQ----PNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVL-FKALDFGIDVSIQA 203 (391)
T ss_dssp ---CGGGGGGTCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTS-SCGGGGTCSEEEEE
T ss_pred ---cccccccccc----cccceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccccchhh-hcccccccceEEee
Confidence 6788888877 577999999999999999999999999987557999999998765332 33445689999999
Q ss_pred CCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 199 SQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
.+|+++|... .|.++.+++..+++... .+ ..|. .++....+.+...+ +-+.-+.+
T Consensus 204 ~TKy~~GhsdvlgG~vv~~~~~~~~~~~~-------------~~-~~G~----~~~p~~a~ll~rgl-----~TL~lR~~ 260 (391)
T d1cl1a_ 204 ATKYLVGHSDAMIGTAVCNARCWEQLREN-------------AY-LMGQ----MVDADTAYITSRGL-----RTLGVRLR 260 (391)
T ss_dssp TTTTTTCSSSCCCEEEEECTTTHHHHHHH-------------HH-HTTC----CCCHHHHHHHHHHH-----TTHHHHHH
T ss_pred cchhccccccccccceeccccccccchhh-------------hh-cccc----cCCchhhhhhhccc-----hhHHHHHH
Confidence 9999988654 38888888776655422 11 1122 24442222222222 22677888
Q ss_pred HHHHHHHHHHHHHHHc-CCccc-cCC----Cc--------cCCCceEEEEcCCCCCHHHHHHHHHhhCCeEE---ccC-C
Q 017726 277 RHRRLGKATRLAVEAW-GLKNC-TQK----EE--------WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSL---GLG-L 338 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~~~~-~~~----~~--------~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v---~~g-~ 338 (367)
+..+++..+.+.|++. .+..+ -|. +. ...+.++.|.+..+.+.+++.+.+ +.-.+.- .-| .
T Consensus 261 ~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~e~~~~f~-d~L~l~~~a~SlG~~ 339 (391)
T d1cl1a_ 261 QHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYL-DNFSLFSMAYSWGGY 339 (391)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHH-TTCSSCBCCSCCCSS
T ss_pred HHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccCCCCcceeeeecCCCCHHHHHHHH-HcCCcceEeeCCCCC
Confidence 9999999999999987 43322 221 10 112346677774444555555444 3333222 112 1
Q ss_pred C--------------------CCCCcEEEEeecCCCCHHHHHHhh
Q 017726 339 N--------------------KVAGKVFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 339 ~--------------------~~~~~~iRi~~~~~~~~~~~~~~~ 363 (367)
. ...++.||+| .|-++.+|++.++
T Consensus 340 ~SLi~~~~~~~~~~~~~~~~~gi~~~liRlS-VGlEd~eDLi~Dl 383 (391)
T d1cl1a_ 340 ESLILANQPEHIAAIRPQGEIDFSGTLIRLH-IGLEDVDDLIADL 383 (391)
T ss_dssp SCEEEEECHHHHHHTSTTCCCCCCSCEEEEE-CCSSCHHHHHHHH
T ss_pred ccceeCCcccccccCCchHhcCCCcCEEEEE-eccCCHHHHHHHH
Confidence 0 1123569998 5777777776543
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=1.3e-20 Score=166.71 Aligned_cols=309 Identities=11% Similarity=0.044 Sum_probs=193.7
Q ss_pred ChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH-
Q 017726 20 IPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL- 98 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~- 98 (367)
+++++++||.+.......|...+...++++.+++++|.+. +++++|||+|+..++.++..+||.+++..+.+++..
T Consensus 12 p~p~v~~A~~~a~~g~~~yg~~p~~~~le~~lA~~~G~~~---~~~~~sGt~A~~~al~a~~~~g~~~~~~~~~~~~~~~ 88 (343)
T d1m6sa_ 12 PTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEA---ALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYE 88 (343)
T ss_dssp CCHHHHHHHHTCCCCCGGGTCCHHHHHHHHHHHHHTTCSE---EEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSS
T ss_pred CCHHHHHHHHhhhcCCcccCCCHHHHHHHHHHHHHHCCCe---EEEeCCHHHHHHHHHHHHhccCCceeccccccceeee
Confidence 3567999999865543333334678899999999999753 688899999999999999999999999988776653
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCC--CCccEEEEE-ecCCCcccccc---HHHHHHHHHhcCCCcEE
Q 017726 99 WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA--HTIKAICIV-HNETATGVTNN---LSKVRKLLDEYRHPALF 172 (367)
Q Consensus 99 ~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~--~~~~lv~~~-~~~n~tG~~~~---~~~i~~~~~~~~~~~~v 172 (367)
....+...+..+..++.+ .+..|++.+++.+..... +++..++++ .++++.|.+.| +.+|+++|++ +|+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~--~g~~~ 165 (343)
T d1m6sa_ 89 VGAMAVLSGVMPHPVPGK-NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKE--HGINV 165 (343)
T ss_dssp TTHHHHHTCCEEEEECEE-TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHH--HTCEE
T ss_pred cccccccccceeeccccc-cCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHh--cCeEE
Confidence 223444456666666644 455699999999886431 344555444 55567777765 5567777788 99999
Q ss_pred EEeeeeccCceeecc-----ccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCcc
Q 017726 173 LVDGVSSICAIDFRM-----DEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFW 247 (367)
Q Consensus 173 i~D~~~~~~~~~~~~-----~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (367)
++|+++..+...... .....+..+.+.+|...+.. .++....++.+....... ....+.
T Consensus 166 ~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~-------------~~~~~~-- 229 (343)
T d1m6sa_ 166 HIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPV-GSVVVGDRDFIERARKAR-------------KMLGGG-- 229 (343)
T ss_dssp EEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSS-CEEEEECHHHHHHHHHHH-------------HHHTCC--
T ss_pred Eeccccccccccccccchhhhccccccccccccccccccc-cccccccHHHHhhhHhhC-------------cccccc--
Confidence 999997654321111 11134566677777775554 477888888766554321 011111
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCC-CCCHHHHHHH
Q 017726 248 PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS-HINSSEIVRR 325 (367)
Q Consensus 248 ~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ 325 (367)
.+.+. ..+ .......... ....+...++...+.+.+.++ +.....+ ...+++++.++. +.+..+|++.
T Consensus 230 -~~~~~--~~~-a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~a~~l~~~ 299 (343)
T d1m6sa_ 230 -MRQAG--VLA-AAGIIALTKM--VDRLKEDHENARFLALKLKEIGYSVNPED----VKTNMVILRTDNLKVNAHGFIEA 299 (343)
T ss_dssp -CSSTH--HHH-HHHHHHHHHS--STTHHHHHHHHHHHHHHHHHHTCBCCGGG----CCSSEEEEECTTSSSCHHHHHHH
T ss_pred -cchhH--HHH-Hhhhhhhhhh--HHHHHHHHHHHHHhhhHHHHhccCccCCC----CCceEEEEEeCCCcccHHHHHHH
Confidence 11222 111 1112222221 122334556666777777776 3333332 234467787753 4678899999
Q ss_pred HHhhCCeEEccCCCCCCCcEEEEeecCCCCHHH--HHHhhhh
Q 017726 326 AWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM--FNFQLLF 365 (367)
Q Consensus 326 L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~--~~~~~l~ 365 (367)
|.++ ||.+.+. ..+.+|+++....+++| .+.++|+
T Consensus 300 L~~~-Gi~v~~~----~~~~iRi~~~~~~t~edid~~v~~l~ 336 (343)
T d1m6sa_ 300 LRNS-GVLANAV----SDTEIRLVTHKDVSRNDIEEALNIFE 336 (343)
T ss_dssp HHHH-TEECEEE----ETTEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHC-CCEEecC----CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 9866 9998763 34579998766655544 4444443
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.86 E-value=8.9e-19 Score=155.50 Aligned_cols=219 Identities=15% Similarity=0.162 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.+....+++.++++-|... .+..+||..|+..++.+++.+||.|++.+.-|.+.. +.......|+++..++..
T Consensus 58 nPT~~~le~~la~LEg~~~---a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~-- 132 (394)
T d1e5ea_ 58 NPTVSNLEGKIAFLEKTEA---CVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-- 132 (394)
T ss_dssp CHHHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT--
T ss_pred CHHHHHHHHHHHHHhCCcc---eeeeccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccceeeeccCCC--
Confidence 4667889999999998665 456688999999999999999999999988666653 456778899999999865
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
|.++++++++ +++++|++.+|.||+..+.|++++.+.+++. +|+++++|.+.+.+.. .+..+.|+|+++.|
T Consensus 133 ---d~~~~~~~i~----~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~-~g~~vvvDnT~atP~~-~~Pl~~GaDiVvhS 203 (394)
T d1e5ea_ 133 ---IPGEVKKHMK----PNTKIVYFETPANPTLKIIDMERVCKDAHSQ-EGVLVIADNTFCSPMI-TNPVDFGVDVVVHS 203 (394)
T ss_dssp ---STTHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHTS-TTCEEEEECTTTCTTT-CCGGGGTCSEEEEE
T ss_pred ---CHHHHHHhhc----ccccEEEEeccCCcceeeehhhhhhhccccc-cCeEEEecCcccCccc-CCchhcCCCEEEec
Confidence 6788999998 5679999999999999999999988866541 6899999998754332 34445689999999
Q ss_pred CCCcccCCCc--ceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Q 017726 199 SQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE 276 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~ 276 (367)
.+|+++|... .|.++++++...+.+...... . .|. +++....+-+...++ -+.-+.+
T Consensus 204 ~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~-~-----------~G~----~lsp~~a~ll~rgl~-----TL~lRm~ 262 (394)
T d1e5ea_ 204 ATKYINGHTDVVAGLICGKADLLQQIRMVGIKD-I-----------TGS----VISPHDAWLITRGLS-----TLNIRMK 262 (394)
T ss_dssp TTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCC-C-----------CCC----CCCHHHHHHHHHHHT-----THHHHHH
T ss_pred hhhhcCCCcccccccccchhhHHHHHHHHHHHH-h-----------hCC----CCChHHHHHHHhhch-----hHHHHHH
Confidence 9999987644 388889988876554221100 0 121 344432222222222 2677889
Q ss_pred HHHHHHHHHHHHHHHc-CC
Q 017726 277 RHRRLGKATRLAVEAW-GL 294 (367)
Q Consensus 277 ~~~~~~~~l~~~L~~~-g~ 294 (367)
+..+++..+.+.|++. .+
T Consensus 263 r~~~nA~~lA~~L~~hp~V 281 (394)
T d1e5ea_ 263 AESENAMKVAEYLKSHPAV 281 (394)
T ss_dssp HHHHHHHHHHHHHHTCTTE
T ss_pred HHHHHHHHHHHHHhhcCCc
Confidence 9999999999999997 44
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.86 E-value=2e-20 Score=172.94 Aligned_cols=234 Identities=9% Similarity=-0.024 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEecCCh-hHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCC--ceEEEeCCCC
Q 017726 42 ALTKTLLEDIKKIFKTTSGTPFLIPTTG-TGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNF--NVDVVESDWG 118 (367)
Q Consensus 42 ~~~~~~~~~la~~~~~~~~~~v~~~~gg-t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~ 118 (367)
....++++.+|+++|++. .+|++|| |.++.+++.++++|||+||+....|.|..- ......+. .+..++.++.
T Consensus 66 ~~i~eae~~~A~~~ga~~---a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~-~~~~l~~~~~~~~~~~~~~~ 141 (462)
T d1c4ka2 66 GPAVAAEKHAARVYNADK---TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYN-SALAMAGGRPVYLQTNRNPY 141 (462)
T ss_dssp THHHHHHHHHHHHTTCSE---EEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHH-HHTTTTCCEEEEECEEECTT
T ss_pred HHHHHHHHHHHHHhCCCe---EEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHH-HHHHHhcCCceeeecccccc
Confidence 567899999999999864 4555555 566777788899999999999998887541 11222233 3333444443
Q ss_pred C--------CCCHHHHHHHHhcc-----CCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceee
Q 017726 119 E--------GAKLDVLASKLAAD-----TAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF 185 (367)
Q Consensus 119 ~--------~~d~e~l~~~i~~~-----~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~ 185 (367)
+ .++.+.++..+.+. ..++++.+++.+.+|..|.+.|+++|.++|++ +|++|++|++|+.+....
T Consensus 142 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~--~g~~l~vD~A~~~~~~~~ 219 (462)
T d1c4ka2 142 GFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGH--LCDYIEFDSAWVGYEQFI 219 (462)
T ss_dssp CCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGG--GBSEEEEECTTCCGGGSS
T ss_pred cccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHH--cCCEEEEechhhcccccc
Confidence 3 12333333332211 01466778888888999999999999999999 999999999998765433
Q ss_pred ccc-------------cccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHH---HHHhhcCCccCC
Q 017726 186 RMD-------------EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDY---IKFYNLGTFWPY 249 (367)
Q Consensus 186 ~~~-------------~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 249 (367)
+.. ..++|++++|+||+++++.|.+++..+...++.... +.+.... ...++ ..
T Consensus 220 ~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~------~~~~~~~~~~~~~~~-----t~ 288 (462)
T d1c4ka2 220 PMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLR------YCDHKHFNNSFNLFM-----ST 288 (462)
T ss_dssp GGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTT------CCCHHHHHHHHHHHS-----CS
T ss_pred CcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccccccch------hhhHHHHHHhhhhcc-----cC
Confidence 221 224699999999999766665666666554432211 1111111 12222 23
Q ss_pred CCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc
Q 017726 250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 250 ~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 292 (367)
+++...+.++.++...+...+.++..++..++++++++++.+.
T Consensus 289 sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~ 331 (462)
T d1c4ka2 289 SPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKA 331 (462)
T ss_dssp SCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5888888899988888876656777888999999999999986
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.86 E-value=2.8e-20 Score=167.40 Aligned_cols=297 Identities=16% Similarity=0.061 Sum_probs=194.7
Q ss_pred CChHHHHHHHccCCCCC-CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeEEEEeCCcch
Q 017726 19 HIPDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFS 96 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl~~~~~~~~ 96 (367)
....+-++++.+..... +....+...+++++.+++++|.+. ++.++|||.|+.+++.++ +.+||+|+++...+.+
T Consensus 10 ~~~~~~~~~~~~~l~~g~~~~~~g~~v~~fE~~~a~~~g~~~---~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~a 86 (384)
T d1b9ha_ 10 QYDDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHGAAH---ALAVTNGTHALELALQVMGVGPGTEVIVPAFTFIS 86 (384)
T ss_dssp CCCHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTTCSE---EEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTH
T ss_pred CCCHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHHCcCe---EEEeCCHHHHHHHHHHHcCCCCCCEEEEecccccc
Confidence 34445566666543322 111123567899999999999876 678899999999999886 7899999999887766
Q ss_pred HHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEe
Q 017726 97 LLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD 175 (367)
Q Consensus 97 ~~~~~~~~~~g~~~~~v~~~~-~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D 175 (367)
.. ..+...|.+++.++.++ ++.+|++.+++.+. +++++|++++ ..|...|++++.++|++ +++++|+|
T Consensus 87 ~~--~ai~~~g~~p~~~d~~~~~~~~d~~~~~~~i~----~~tk~i~~~~---~~g~~~d~~~i~~~~~~--~~i~lieD 155 (384)
T d1b9ha_ 87 SS--QAAQRLGAVTVPVDVDAATYNLDPEAVAAAVT----PRTKVIMPVH---MAGLMADMDALAKISAD--TGVPLLQD 155 (384)
T ss_dssp HH--HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCC----TTEEEECCBC---GGGCCCCHHHHHHHHHH--HTCCBCEE
T ss_pred cc--ccccccccccccccccccccccchhhhccccc----cccccccccc---ccccccccccchhhhhh--hhhhhhhh
Confidence 54 45677899999999875 46789999999987 5779987655 68889999999999999 99999999
Q ss_pred eeeccCceeeccc----cccceEEEecCCCcccCCCcceeee-eCHHHHHHhccCCCCceeechHHHH-HHhhcCCccCC
Q 017726 176 GVSSICAIDFRMD----EWGIDVALTGSQKALSLPTGMGIVC-ASPKALEASKTAKSVRVFFDWKDYI-KFYNLGTFWPY 249 (367)
Q Consensus 176 ~~~~~~~~~~~~~----~~~~d~~~~s~~K~~~g~~g~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 249 (367)
++|+.|+.. +.. .....++.++.+|.+.++.| |+++ -++++.+++......+......... .....|. .+
T Consensus 156 ~a~a~ga~~-~g~~~g~~g~~~~~Sf~~~K~i~~g~G-G~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~--n~ 231 (384)
T d1b9ha_ 156 AAHAHGARW-QGKRVGELDSIATFSFQNGKLMTAGEG-GAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGS--NM 231 (384)
T ss_dssp CTTCTTCEE-TTEEGGGSSSCEEEECCTTSSSCSSSC-EEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCC--BC
T ss_pred hceeccccc-CCEecCcccccceeccccccccccccc-chhhhhhHHHHHHHHHHHhcCCCCcccccccccccccc--cc
Confidence 999988752 211 11345666778999976666 5555 4566655554322111000000000 0000121 11
Q ss_pred CCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCC--CccCCCceEEEEcCCCCC--HHHHHH
Q 017726 250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQK--EEWFSDTVTAVIVPSHIN--SSEIVR 324 (367)
Q Consensus 250 ~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~l~~ 324 (367)
-++- +++++...+-..+++..++.+++++++.+.|++. ++...... .......+..+.++.... -+++.+
T Consensus 232 rms~-----l~Aaig~~qL~~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~ 306 (384)
T d1b9ha_ 232 RLNE-----FSASVLRAQLARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNALVD 306 (384)
T ss_dssp BCBH-----HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHH
T ss_pred cccc-----chhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccccccccccccccccccccceecccccccHHHHHH
Confidence 1222 3444444444457888888899999999999987 65443321 222333445566632221 246999
Q ss_pred HHHhhCCeEEccCCC
Q 017726 325 RAWQRYNLSLGLGLN 339 (367)
Q Consensus 325 ~L~~~~gv~v~~g~~ 339 (367)
.|.+ .||.++..+.
T Consensus 307 ~L~~-~GI~~~~~y~ 320 (384)
T d1b9ha_ 307 RLVE-AGLPAFAAFR 320 (384)
T ss_dssp HHHH-TTCCEEECCC
T ss_pred HHHH-CCCCeeeeCc
Confidence 9965 4998876543
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.86 E-value=1.2e-19 Score=160.33 Aligned_cols=312 Identities=11% Similarity=0.030 Sum_probs=199.5
Q ss_pred CChHHHHHHHccCCCCC-CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchH
Q 017726 19 HIPDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSL 97 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~ 97 (367)
+++++|++|+.+....+ .+|...+..+++|+.+++++|.+. +++||+|||+|+..++...+.+++.+++....+++.
T Consensus 14 g~~P~v~~A~~~a~~~~~~~~~~~~~~~~l~~~la~~~g~~~--~v~f~~sGt~An~~a~~~~~~~~~~~~~~~~~~~~~ 91 (345)
T d1v72a1 14 GASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDV--EVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINN 91 (345)
T ss_dssp CCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHHTSCC--EEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHH
T ss_pred CCCHHHHHHHHHHhccCccccCCCHHHHHHHHHHHHHHCCCc--EEEECCchHHHHHHHHHHHHhcCCccccccccceee
Confidence 35788999999875543 344455788999999999999765 589999999999999999888888888887776665
Q ss_pred H-HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCC--CCccE-EEEEecCCCccccc---cHHHHHHHHHhcCCCc
Q 017726 98 L-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA--HTIKA-ICIVHNETATGVTN---NLSKVRKLLDEYRHPA 170 (367)
Q Consensus 98 ~-~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~--~~~~l-v~~~~~~n~tG~~~---~~~~i~~~~~~~~~~~ 170 (367)
. ........+..+..++...++..+++.++..+.+... ..+.. ++.+.+.|+.|... ++.++.++|++ +|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~ 169 (345)
T d1v72a1 92 DECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKS--SSL 169 (345)
T ss_dssp SSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHH--TTC
T ss_pred echhhHHHhcCcccccccccccccccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHh--cCc
Confidence 3 2234455677777777777778899999999886431 22333 34555556666654 56778889999 999
Q ss_pred EEEEeeeeccCceeec-------cccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhc
Q 017726 171 LFLVDGVSSICAIDFR-------MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL 243 (367)
Q Consensus 171 ~vi~D~~~~~~~~~~~-------~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (367)
++++|+++..+..... ......+..+.+++|...+..+ ++............. .....
T Consensus 170 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------------~~~~~ 234 (345)
T d1v72a1 170 GLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAE-AIVLFNTSLATEMSY--------------RRKRA 234 (345)
T ss_dssp EEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCE-EEEESSGGGHHHHHH--------------HHHHT
T ss_pred eeeecccccceeccccccCHHHhhccccccccccCcccccccccc-ccccchhhhhhhccc--------------ccccc
Confidence 9999999865432211 1112345666666665432222 233332222211111 00111
Q ss_pred CCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCCHHHH
Q 017726 244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEI 322 (367)
Q Consensus 244 ~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (367)
+. ...... .+..++.....+....+...+..++..++.+.|+++ |+.+..+. ..++++++++ .++
T Consensus 235 ~~--~~~~~~---~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~----~~niv~~~~~-----~~~ 300 (345)
T d1v72a1 235 GH--LSSKMR---FLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGT----EANILFCRLD-----SAM 300 (345)
T ss_dssp TC--CCSSTH---HHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCC----CSSEEEEEEC-----HHH
T ss_pred cc--ccchhh---HHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhcCCcEeccCC----CccEEEEEcC-----HHH
Confidence 11 111222 233334444444445666777788888999999887 77776652 3457778773 467
Q ss_pred HHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHH--HHHhhhhc
Q 017726 323 VRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVM--FNFQLLFQ 366 (367)
Q Consensus 323 ~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~--~~~~~l~~ 366 (367)
+++|+++ |+.+..+. ...+.+||++...++++| .+.++|++
T Consensus 301 ~~~L~~~-gi~v~~~~--~~~~~lR~~~~~~~T~edid~~le~lr~ 343 (345)
T d1v72a1 301 IDALLKA-GFGFYHDR--WGPNVVRFVTSFATTAEDVDHLLNQVRL 343 (345)
T ss_dssp HHHHHHT-TCBCBCSS--SSTTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHc-CCCccccC--CCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 7888766 88775432 235789999766666554 44455553
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=7.2e-19 Score=156.68 Aligned_cols=297 Identities=13% Similarity=0.056 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.+....+++.|+.+-|... .+.++||..|+..++.+++.+||+|++...-|.+.+ +.......|+++..++...
T Consensus 57 nPT~~~LE~~la~LE~~~~---a~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~- 132 (421)
T d2ctza1 57 NPTVDVLEKRLAALEGGKA---ALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE- 132 (421)
T ss_dssp CHHHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTC-
T ss_pred CHHHHHHHHHHHHHhCCCe---EEEecChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhccccceeccccc-
Confidence 3667899999999998654 456688999999999999999999999999887764 4557788999998876431
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEEEec
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~~s 198 (367)
+.+..++.++ ++||+|++.+|.||+..+.|+++|+++||+ +|+++++|.+.+.........+.|+|+++.|
T Consensus 133 ---~~~~~~~~~~----~~t~li~~EtpsNP~l~v~Di~~i~~iA~~--~g~~~vvDnT~a~tP~~~~Pl~~GaDiVvhS 203 (421)
T d2ctza1 133 ---RPEEFLALTD----EKTRAWWVESIGNPALNIPDLEALAQAARE--KGVALIVDNTFGMGGYLLRPLAWGAALVTHS 203 (421)
T ss_dssp ---CHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHH--HTCEEEEECGGGGGGTSCCGGGGTCSEEEEE
T ss_pred ---CcchhccccC----CCceEEEEcCCCcceeEecchHHHHHHHHh--cCCceEecccccccceeccccccCCcEEEEe
Confidence 3456666666 578999999999999999999999999999 9999999999763332234445689999999
Q ss_pred CCCcccCCCc--ceeeeeCHHHHHH-h--------ccCCCCceeec---hHHHHHHh------hcCCccCCCCcHHHHHH
Q 017726 199 SQKALSLPTG--MGIVCASPKALEA-S--------KTAKSVRVFFD---WKDYIKFY------NLGTFWPYTPSIQLLYG 258 (367)
Q Consensus 199 ~~K~~~g~~g--~g~~~~~~~~~~~-~--------~~~~~~~~~~~---~~~~~~~~------~~~~~~~~~~~~~~~~a 258 (367)
.+|+++|... .|.++.+++.... . ........+.+ ...+..+. ..|. .++....+.
T Consensus 204 ~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~----~~sP~~a~l 279 (421)
T d2ctza1 204 LTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQ----ALGPFEAWV 279 (421)
T ss_dssp TTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCC----CCCHHHHHH
T ss_pred chhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccC----CCCHHHHHH
Confidence 9999987644 3777766543110 0 00000000000 00000000 1232 244432222
Q ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CC-ccccCC----Cc---------cCCCceEEEEcCCCCCHHHHH
Q 017726 259 LRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GL-KNCTQK----EE---------WFSDTVTAVIVPSHINSSEIV 323 (367)
Q Consensus 259 l~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~~----~~---------~~~~~~~~~~~~~~~~~~~l~ 323 (367)
+...++ -+.-+.++..+++..+.+.|++. .+ ++.-|. +. ...+.++.|.+. + ..+-.
T Consensus 280 ~~rgl~-----TL~lRm~~~~~nA~~vA~~L~~hp~V~~V~yPgL~s~p~~~~a~~~~~g~~G~~~sf~l~-~--~~~~a 351 (421)
T d2ctza1 280 VLLGME-----TLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLK-G--GYEAA 351 (421)
T ss_dssp HHHHHT-----THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEET-T--HHHHH
T ss_pred HhcCCc-----chhhHHHHHHHHHHHHHhhhccCCCeeEEecCCcCCCccHHHHHHhcCCCCceEEEEEec-C--CHHHH
Confidence 222222 26778889999999999999997 44 332221 11 123558888883 2 22323
Q ss_pred HHHHhhCCe---EEccC-CC----------------------CCCCcEEEEeecCCCCHHHHHHhh
Q 017726 324 RRAWQRYNL---SLGLG-LN----------------------KVAGKVFRIGHLGHLNEVMFNFQL 363 (367)
Q Consensus 324 ~~L~~~~gv---~v~~g-~~----------------------~~~~~~iRi~~~~~~~~~~~~~~~ 363 (367)
+++.+.-.+ .+.-| .. ...++.||+| .|-++.+|++.++
T Consensus 352 ~~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~GI~~~liRlS-vGlEd~eDLi~DL 416 (421)
T d2ctza1 352 KRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLS-VGLEHVEDLKAEL 416 (421)
T ss_dssp HHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEE-CCSSCHHHHHHHH
T ss_pred HHHHHcCCcCeeccccccccceeeCcccccchhCCHHHHHhcCCCcCeEEEE-eccCCHHHHHHHH
Confidence 333333232 22212 11 0123579998 6888888877665
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.83 E-value=8.1e-19 Score=157.27 Aligned_cols=315 Identities=12% Similarity=0.051 Sum_probs=206.2
Q ss_pred ChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCC--CeEEEEeCCcc
Q 017726 20 IPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPG--DRIISFLIGQF 95 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~g--d~vl~~~~~~~ 95 (367)
+.++-++++.+.... .... ++..+++++.+++++|.+. +++++|||.|+.+++.++ ..+| ++|+++...+.
T Consensus 10 ~~~~~~~~v~~~l~~~~~~~--G~~v~~fE~~~~~~~g~k~---ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~ 84 (371)
T d2fnua1 10 LDKEDKKAVLEVLNSKQLTQ--GKRSLLFEEALCEFLGVKH---ALVFNSATSALLTLYRNFSEFSADRNEIITTPISFV 84 (371)
T ss_dssp CCHHHHHHHHHHHTSSCCSS--SHHHHHHHHHHHHHHTCSE---EEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCT
T ss_pred CCHHHHHHHHHHHcCCCccC--CHHHHHHHHHHHHHHCcCe---EEEEecHHHHHHHHHHHhcccCCCCCeeeccccccc
Confidence 444555666664433 2233 3678899999999999875 678899999999999885 3344 47999877666
Q ss_pred hHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEe
Q 017726 96 SLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD 175 (367)
Q Consensus 96 ~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D 175 (367)
+.. ......|++++.++++.++.++.++++++++ +++++|+.+| ..|...+++++.++|++ +++++|+|
T Consensus 85 a~~--~ai~~~G~~pv~vDi~~~~~~~~~~~~~~~~----~~t~avi~vh---~~G~~~~~~~i~~~~~~--~~i~lIED 153 (371)
T d2fnua1 85 ATA--NMLLESGYTPVFAGIKNDGNIDELALEKLIN----ERTKAIVSVD---YAGKSVEVESVQKLCKK--HSLSFLSD 153 (371)
T ss_dssp HHH--HHHHHTTCEEEECCBCTTSSBCGGGSGGGCC----TTEEEEEEEC---GGGCCCCHHHHHHHHHH--HTCEEEEE
T ss_pred ccc--eeeeccCcccccccccccccccchhhhhhcc----chhhcccccc---ccccccccccccccccc--cchhhccc
Confidence 543 4567799999999999888778888877766 6789999887 47999999999999999 99999999
Q ss_pred eeeccCceeec---cccccceEEEecCCCcccCCCcceeee-eCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCC
Q 017726 176 GVSSICAIDFR---MDEWGIDVALTGSQKALSLPTGMGIVC-ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTP 251 (367)
Q Consensus 176 ~~~~~~~~~~~---~~~~~~d~~~~s~~K~~~g~~g~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (367)
++|++|+..-. .....+.+..+...|.+.+..| |+++ -++++.+++......+..............|. .+-+
T Consensus 154 aaqa~Ga~~~~~~~G~~g~~~~~Sf~~~K~l~~g~G-G~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~--n~r~ 230 (371)
T d2fnua1 154 SSHALGSEYQNKKVGGFALASVFSFHAIKPITTAEG-GAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGH--NFRL 230 (371)
T ss_dssp CTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSC-EEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCC--BCCC
T ss_pred hhhccCceeccccCCccccccccccccccccccccc-eEEEeechhhhhhcccccccccccccccccccccccc--cccc
Confidence 99999875321 1111245666667899977666 5555 45677777765443322110000000001121 1112
Q ss_pred cHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccC-CCccCCCceEEEEcCCC--CCHHHHHHHHH
Q 017726 252 SIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQ-KEEWFSDTVTAVIVPSH--INSSEIVRRAW 327 (367)
Q Consensus 252 ~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~l~~~L~ 327 (367)
+- +++++...+-..+++..++.++++.++.+.|.+. ++....+ ......+..+.+.+.+. .+-+++.+.|.
T Consensus 231 se-----l~Aaigl~qL~~l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~L~ 305 (371)
T d2fnua1 231 NE-----IQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESLH 305 (371)
T ss_dssp CH-----HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHH
T ss_pred cc-----hhhhhhhhhhhhccchhhhhhhhhhhhcccccccccccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 22 3445555554557888888889999999999886 5444332 22223433444444321 23467889996
Q ss_pred hhCCeEEccCCCCC-----------CC----------cEEEEeecCCCCHHHH
Q 017726 328 QRYNLSLGLGLNKV-----------AG----------KVFRIGHLGHLNEVMF 359 (367)
Q Consensus 328 ~~~gv~v~~g~~~~-----------~~----------~~iRi~~~~~~~~~~~ 359 (367)
++ ||.++..+.+. .+ ..+.+-.+...+++|+
T Consensus 306 ~~-gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di 357 (371)
T d2fnua1 306 KR-GILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESV 357 (371)
T ss_dssp HT-TEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHH
T ss_pred HC-CCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHH
Confidence 54 99988765431 11 3578877777776654
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.83 E-value=6e-19 Score=161.42 Aligned_cols=284 Identities=13% Similarity=0.105 Sum_probs=178.8
Q ss_pred ChHHHHHHHccCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHH
Q 017726 20 IPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLW 99 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~ 99 (367)
+.+..+.++. .....|.-.....++++.+++++|.+. +++++||+.|+.+++.+++++||.|+... ++....
T Consensus 56 m~~~~~aa~~---~GDd~Y~~dpt~~~lE~~~a~l~G~e~---al~~~SGt~An~~a~~~l~~~Gd~Vi~~~--~f~~~~ 127 (456)
T d1c7ga_ 56 MSDKQWAGMM---IGDEAYAGSENFYHLEKTVKELFGFKH---IVPTHQGRGAENLLSQLAIKPGQYVAGNM--YFTTTR 127 (456)
T ss_dssp EEHHHHHHTT---SCCCCSSSCHHHHHHHHHHHHHHCCSE---EEEESSHHHHHHHHHHHHCCTTEEEEESS--CCHHHH
T ss_pred chHHHHHHHh---ccchhccCCchHHHHHHHHHHHhCCCe---EEECCCHHHHHHHHHHHhcCCCCeEecCc--chHHHH
Confidence 3555555543 222234344778899999999999876 68899999999999999999999877432 332221
Q ss_pred HHHHHHhCCceEEEeCC----------CCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcc-ccc---cHHHHHHHHHh
Q 017726 100 IDQQQRLNFNVDVVESD----------WGEGAKLDVLASKLAADTAHTIKAICIVHNETATG-VTN---NLSKVRKLLDE 165 (367)
Q Consensus 100 ~~~~~~~g~~~~~v~~~----------~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG-~~~---~~~~i~~~~~~ 165 (367)
......|.....+..+ ..+.+|+++++++|++++..++.++++.+++|+.| .+. ++++|.++|++
T Consensus 128 -~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~ 206 (456)
T d1c7ga_ 128 -FHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMAST 206 (456)
T ss_dssp -HHHHHTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHH
T ss_pred -HHHHHcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHH
Confidence 2234567766655432 23568999999999986534567889999999887 333 57788999999
Q ss_pred cCCCcEEEEeeeeccCcee-----------eccc------cccceEEEecCCCcccCCCcceeeeeCH-HHHHHhccCCC
Q 017726 166 YRHPALFLVDGVSSICAID-----------FRMD------EWGIDVALTGSQKALSLPTGMGIVCASP-KALEASKTAKS 227 (367)
Q Consensus 166 ~~~~~~vi~D~~~~~~~~~-----------~~~~------~~~~d~~~~s~~K~~~g~~g~g~~~~~~-~~~~~~~~~~~ 227 (367)
+|+.+++|+++.++... .+.. -..+|++++|.+|.+.++.| |+++.++ ++.++.....
T Consensus 207 --~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~G-G~i~~~~~~l~~~~r~~~- 282 (456)
T d1c7ga_ 207 --YGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIG-GFLCMNDEEMFSAAKELV- 282 (456)
T ss_dssp --HTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSC-EEEEESCHHHHHHHHHHH-
T ss_pred --cCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccce-eEEEcCCHHHHHHHHHhc-
Confidence 99999999987543211 0110 01379999999999976665 7777654 4455544211
Q ss_pred CceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCc
Q 017726 228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDT 307 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 307 (367)
....+....+..+...+.++...+. +..+ ....++..++.++|.+.|++.|+.++.+. ..+
T Consensus 283 ------------~~~~g~~~~g~~~~~~~~a~a~~l~--e~~~-~~~l~~r~~~~~~L~e~L~~~g~~vv~p~----g~~ 343 (456)
T d1c7ga_ 283 ------------VVYEGMPSYGGLAGRDMEAMAIGLR--EAMQ-YEYIEHRVKQVRYLGDKLREAGVPIVEPT----GGH 343 (456)
T ss_dssp ------------HHHTCCTTTTTCCHHHHHHHHHHHH--HHTC-HHHHHHHHHHHHHHHHHHHHTTCCBCSSC----CSS
T ss_pred ------------cccCCCcccchhhHHHHHHHHHHHH--HhcC-HHHHHHHHHHHHHHHHHHHhccCCcccCC----CCc
Confidence 0111111122344433333333333 2222 23345556777899999999998888763 333
Q ss_pred eEEEEc----C----CCCCHHHHHHHHHhhCCeEEc
Q 017726 308 VTAVIV----P----SHINSSEIVRRAWQRYNLSLG 335 (367)
Q Consensus 308 ~~~~~~----~----~~~~~~~l~~~L~~~~gv~v~ 335 (367)
.+.+.. + +.....++...|..+.||...
T Consensus 344 ~v~vda~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~ 379 (456)
T d1c7ga_ 344 AVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSM 379 (456)
T ss_dssp EEEEEHHHHCTTSCGGGCHHHHHHHHHHHHHSEECE
T ss_pred ceeEechhhccCCCcccccHHHHHHHHHHHhCeeec
Confidence 344432 1 112334566666666688754
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.82 E-value=1.9e-18 Score=155.00 Aligned_cols=231 Identities=13% Similarity=0.127 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGE 119 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 119 (367)
++..+++++.+++++|.+. +++++|||.|+.+++.++ +.+||+|+++...+.+.. ......|++++.++++++.
T Consensus 20 G~~~~~fE~~~~~~~~~~~---~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~--~~~~~~g~~pv~~Di~~~~ 94 (374)
T d1o69a_ 20 GEFVNRFEQSVKDYSKSEN---ALALNSATAALHLALRVAGVKQDDIVLASSFTFIASV--APICYLKAKPVFIDCDETY 94 (374)
T ss_dssp THHHHHHHHHHHHHHCCSE---EEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGT--HHHHHTTCEEEEECBCTTS
T ss_pred CHHHHHHHHHHHHHHCcCe---EEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhH--HHHhhccceeEeccccccc
Confidence 3668899999999999875 688899999999999886 789999999988776653 4466789999999998665
Q ss_pred CCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccc--cceEEEe
Q 017726 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW--GIDVALT 197 (367)
Q Consensus 120 ~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~--~~d~~~~ 197 (367)
.......+......+ +++++|++++. .|...+++++.++|++ +|++||+|+||++|+.. ..... -.|+.++
T Consensus 95 ~~~~~~~~~~~~~~~-~~~~aii~~~~---~G~~~d~~~i~~~~~~--~~i~vIED~a~a~g~~~-~~~~~G~~gd~~~f 167 (374)
T d1o69a_ 95 NIDVDLLKLAIKECE-KKPKALILTHL---YGNAAKMDEIVEICKE--NDIVLIEDAAEALGSFY-KNKALGTFGEFGVY 167 (374)
T ss_dssp SBCHHHHHHHHHHCS-SCCCEEEEECG---GGCCCCHHHHHHHHHH--TTCEEEEECTTCTTCEE-TTEETTSSSSEEEE
T ss_pred ccccccccccchhcc-ccccccccccc---ccchhhhHHHHHHhhc--cCcchhhhhhhhhcceE-CCeecCCCCceEEE
Confidence 443333333323322 57899998875 7999999999999999 99999999999998752 21111 1265555
Q ss_pred c--CCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHH
Q 017726 198 G--SQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275 (367)
Q Consensus 198 s--~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~ 275 (367)
| .+|.+.+..|.+++.-++++.+++...........+.. ...+.|. .+-++- +++|+...+-..++++.
T Consensus 168 Sf~~~K~l~tgeGG~i~tnn~~~~~~~~~~~~~g~~~~~~~--~~~~~G~--N~rm~e-----i~Aaig~~qL~~l~~~i 238 (374)
T d1o69a_ 168 SYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHY--EHLDYGY--NYRLSN-----VLGAIGVAQMEVLEQRV 238 (374)
T ss_dssp ECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSC--CCSSCCC--BCBCCH-----HHHHHHHHHHTTHHHHH
T ss_pred eccCccccccccceeehhhhHHHHHhhcccccccccccccc--ccccCCc--cccccc-----hhhhhhHHHHhhhhhhc
Confidence 5 55999766664444556777776664432211110000 0001111 111222 45555555545577788
Q ss_pred HHHHHHHHHHHHHHHHc
Q 017726 276 ERHRRLGKATRLAVEAW 292 (367)
Q Consensus 276 ~~~~~~~~~l~~~L~~~ 292 (367)
++.+++++++.+.|.+.
T Consensus 239 ~~r~~i~~~y~~~L~~~ 255 (374)
T d1o69a_ 239 LKKREIYEWYKEFLGEY 255 (374)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred chhHHHHHHHHhhcccc
Confidence 88888999999999775
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.82 E-value=4.4e-19 Score=155.63 Aligned_cols=315 Identities=13% Similarity=0.075 Sum_probs=185.4
Q ss_pred CChHHHHHHHccCCCCC-CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchH
Q 017726 19 HIPDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSL 97 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~ 97 (367)
+.+++|++|+.+....+ .++...+..+++|+.+++++|.+++ +|++|+|||+|+..++..+..+++.+++....+.+.
T Consensus 11 g~~P~v~eAl~~~~~~~~~~y~~~~~~~~lr~~ia~~~g~~~~-~v~~tsggtean~~a~~~~~~~~~~~~~~~~~~~~~ 89 (340)
T d1svva_ 11 GMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDA-DVHFISGGTQTNLIACSLALRPWEAVIATQLGHIST 89 (340)
T ss_dssp CCCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHHTCTTS-EEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHH
T ss_pred CCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHhCCCcc-eEEEcCCHHHHHHHHHHHHhhhccccccccccceee
Confidence 34678999999865542 3444457788999999999999875 499999999999999999999999999888876665
Q ss_pred HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCC--CCccEEEEEecCCCcccccc---HHHHHHHHHhcCCCcEE
Q 017726 98 LWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA--HTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALF 172 (367)
Q Consensus 98 ~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~--~~~~lv~~~~~~n~tG~~~~---~~~i~~~~~~~~~~~~v 172 (367)
.........+.....+.... ...+.+....+...... ..+..+++++..|..|.+.+ +..+.+.|++ +++++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~ 166 (340)
T d1svva_ 90 HETGAIEATGHKVVTAPCPD-GKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKE--HGLYL 166 (340)
T ss_dssp SSTTHHHHTTCCEEEECCTT-SCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHH--HTCEE
T ss_pred eecccccccceeeeeccccc-ccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhccccc--cccee
Confidence 31122233444444444332 23344444444332110 12334555555555666554 5567788888 99999
Q ss_pred EEeeeeccCceeeccc-------cccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCC
Q 017726 173 LVDGVSSICAIDFRMD-------EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGT 245 (367)
Q Consensus 173 i~D~~~~~~~~~~~~~-------~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (367)
++|+++.......+.. ....++...++.|... ..+.+............... .....+
T Consensus 167 ~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------------~~~~~~- 231 (340)
T d1svva_ 167 FLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGG-MFGEALIILNDALKPNARHL-------------IKQRGA- 231 (340)
T ss_dssp EEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTC-SSCEEEEECSGGGCTTHHHH-------------HHHTTC-
T ss_pred eeeccceeeeecccccccccccccccceeeecCCccccc-cccccccccchhhhhhhhhh-------------cccccC-
Confidence 9999876543322211 1124566677777654 33334444433332111110 001111
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCCCCCHHHHHHH
Q 017726 246 FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRR 325 (367)
Q Consensus 246 ~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 325 (367)
...... .+..+++..+...+.....++...++.++.+.|++.|+.+..|. ...++++.++ .+..+.
T Consensus 232 --~~~~~~---~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~----~~~~v~~~~~-----~~~~~~ 297 (340)
T d1svva_ 232 --LMAKGW---LLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLAWPS----ASNQLFPILE-----NTMIAE 297 (340)
T ss_dssp --CCTTTH---HHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCC----SSSEECBEEE-----HHHHHH
T ss_pred --ccchhh---HHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcCCCeeecCC----CceEEEEeCC-----HHHHHH
Confidence 111222 22333444444444666788889999999999999999887763 2345666663 356667
Q ss_pred HHhhCCeEEccCCCCCCCcEEEEeecCCCC--HHHHHHhhhhcC
Q 017726 326 AWQRYNLSLGLGLNKVAGKVFRIGHLGHLN--EVMFNFQLLFQL 367 (367)
Q Consensus 326 L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~--~~~~~~~~l~~~ 367 (367)
|.++ +........+...+.+|+++....+ +.|.+.++|+++
T Consensus 298 l~~~-~~~~~~~~~~~~~~~vR~s~~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 298 LNND-FDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp HTTT-EECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred HHHh-hhhhcccccCCCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 7655 3322211222334679998655444 456666666654
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=1.5e-17 Score=147.35 Aligned_cols=214 Identities=13% Similarity=0.100 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeCCCC
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG 118 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 118 (367)
.+....+++.++++-|.+. .+..+||..|+..++ .++.+||+|++...-|.+.. +...+...|+++..++.
T Consensus 54 nPT~~~lE~~la~LE~~~~---a~~~sSGmaAi~~~l-~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~~--- 126 (393)
T d1n8pa_ 54 NPNRENLERAVAALENAQY---GLAFSSGSATTATIL-QSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTND--- 126 (393)
T ss_dssp CHHHHHHHHHHHHHTTCSE---EEEESCHHHHHHHHH-HTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESS---
T ss_pred ChHHHHHHHHHHHHhCCce---EEEecCchhHHHhhh-hcccCCCeeeeeeeecccchhhhhhhhhcccceeEEeec---
Confidence 3667889999999988554 455588888886554 56788999999988777764 44556677888877752
Q ss_pred CCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhc--CCCcEEEEeeeeccCceeeccccccceEEE
Q 017726 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY--RHPALFLVDGVSSICAIDFRMDEWGIDVAL 196 (367)
Q Consensus 119 ~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~--~~~~~vi~D~~~~~~~~~~~~~~~~~d~~~ 196 (367)
+.++++++++ +++|+|++.+|.||+..+.|+++++++||+. .+|+++++|.+.+.+. .....+.|+|+++
T Consensus 127 ---~~~~~~~~i~----~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~-~~~Pl~~GADiVv 198 (393)
T d1n8pa_ 127 ---LLNDLPQLIK----ENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPY-ISNPLNFGADIVV 198 (393)
T ss_dssp ---HHHHHHHHSC----SSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHH-HCCGGGGTCSEEE
T ss_pred ---chHHHHHHhh----hhcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCcc-cCCchhhCCCEEE
Confidence 4578888887 5779999999999999999999999999942 3799999999865422 2233456899999
Q ss_pred ecCCCcccCCCc--ceeeeeC-HHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHH
Q 017726 197 TGSQKALSLPTG--MGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLEN 273 (367)
Q Consensus 197 ~s~~K~~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~ 273 (367)
.|.+|+++|... .|.++.+ +++.+++... .. ..|. .++....+.+...++ -+.-
T Consensus 199 hS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~-------------~~-~~G~----~~~p~~a~ll~rgl~-----Tl~l 255 (393)
T d1n8pa_ 199 HSATKYINGHSDVVLGVLATNNKPLYERLQFL-------------QN-AIGA----IPSPFDAWLTHRGLK-----TLHL 255 (393)
T ss_dssp EETTTTTTCSSCCCCEEEEESCHHHHHHHHHH-------------HH-HHCC----CCCHHHHHHHHHHHT-----THHH
T ss_pred EccccccCCCCccccceeeecchhHHHHHHHH-------------Hh-hcCC----CCChHHHHHHHhCCc-----chhh
Confidence 999999988654 2766654 4455555422 11 1132 244432222222222 2677
Q ss_pred HHHHHHHHHHHHHHHHHHc
Q 017726 274 VIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 274 ~~~~~~~~~~~l~~~L~~~ 292 (367)
+.++..+++..+.+.|++.
T Consensus 256 R~~~~~~nA~~lA~~L~~~ 274 (393)
T d1n8pa_ 256 RVRQAALSANKIAEFLAAD 274 (393)
T ss_dssp HHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 8889999999999999764
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.76 E-value=4.7e-16 Score=139.19 Aligned_cols=308 Identities=12% Similarity=0.030 Sum_probs=203.2
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-CCCCCeEEEEeCCcchHH--HHHHHHHhCCceEEEeC
Q 017726 39 AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVES 115 (367)
Q Consensus 39 ~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~ 115 (367)
+..+..-+++++++++.|.+... .-.-.|+++....++.+. ....+++++...-|++.. ....++..|++++.++.
T Consensus 105 G~Lq~l~e~q~~l~eltGmd~~n-~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~ 183 (437)
T d1wyua1 105 GVLQATFEYQTMIAELAGLEIAN-ASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL 183 (437)
T ss_dssp HHHHHHHHHHHHHHHHHTSSEEC-SCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHHhhCCCccc-cCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcccceeeEEeeec
Confidence 45677889999999999998432 234455555555444332 234567888877776654 34567788999999998
Q ss_pred CCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEEeeeeccCceeeccccccceEE
Q 017726 116 DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVA 195 (367)
Q Consensus 116 ~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~d~~ 195 (367)
+.+.. +.++ ++ +++.+|++.+| |..|.+.+++++.+++|+ .|.++++|+.......--+..+.|+|++
T Consensus 184 ~~~~~-~~~~----~~----~~~Aavmi~~P-nt~G~~ed~~~i~~~~h~--~G~l~~~~ad~~al~~l~~Pg~~GaDi~ 251 (437)
T d1wyua1 184 EGGRT-PLPE----VG----EEVGAVVVQNP-NFLGALEDLGPFAEAAHG--AGALFVAVADPLSLGVLKPPGAYGADIA 251 (437)
T ss_dssp BTTBC-CCCC----CC----TTEEEEEEESS-CTTSBCCCHHHHHHHHHH--TTCEEEEECCTTGGGTBCCHHHHTCSEE
T ss_pred ccccc-hhhh----hc----cceeEEEEccc-cccccccchHHHHHHhhh--ccceEEeeechhhhhccccccccccceE
Confidence 75443 2222 23 46788888887 568999999999999999 9999888865433333334556789999
Q ss_pred EecCCCcccCC-----CcceeeeeCHHHHHHhccCCCC---------ceee--chHHHHHHhhcCCccCCCCcHHHHHHH
Q 017726 196 LTGSQKALSLP-----TGMGIVCASPKALEASKTAKSV---------RVFF--DWKDYIKFYNLGTFWPYTPSIQLLYGL 259 (367)
Q Consensus 196 ~~s~~K~~~g~-----~g~g~~~~~~~~~~~~~~~~~~---------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~al 259 (367)
+++ +|.|+.| ++.|++.+++++.+.+...... .+.. ...++..+-+.++....+.+.+.....
T Consensus 252 ~g~-~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a 330 (437)
T d1wyua1 252 VGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMG 330 (437)
T ss_dssp EEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHH
T ss_pred eec-cceeccccCCCcCccccccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHH
Confidence 999 6666555 4459999999998777654431 1111 222333444545422334555444444
Q ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCC
Q 017726 260 RAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGL 338 (367)
Q Consensus 260 ~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~ 338 (367)
...+.++..+|++++.++...++.++++.|.+. |+.+..+.+ ... -+.+++ +.+..++.++|.++ |+....-.
T Consensus 331 ~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~--~f~-ef~v~~--~~~~~~i~k~L~d~-G~~~~~~~ 404 (437)
T d1wyua1 331 AMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKP--FFN-EFALAL--PKDPEAVRRALAER-GFHGATPV 404 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSS--BCS-EEEEEC--SSCHHHHHHHHHHT-TCCCCEEC
T ss_pred HHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCC--eee-EEEEEC--CCCHHHHHHHHHhC-CCCCCccc
Confidence 555667788999999999999999999999997 887665422 111 234454 35788999999755 88643222
Q ss_pred CC-CCCcEEEEeecCCCCHH--HHHHhhhhc
Q 017726 339 NK-VAGKVFRIGHLGHLNEV--MFNFQLLFQ 366 (367)
Q Consensus 339 ~~-~~~~~iRi~~~~~~~~~--~~~~~~l~~ 366 (367)
.+ ...+.+.|++.-..+.+ |.+.++|++
T Consensus 405 ~~~~~~~~lli~~TE~~tkeeiD~~v~al~e 435 (437)
T d1wyua1 405 PREYGENLALFAATELHEEEDLLALREALKE 435 (437)
T ss_dssp CTTSCSSEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred ccCCCCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 22 23467899876565554 455555543
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.73 E-value=1.3e-16 Score=147.23 Aligned_cols=297 Identities=12% Similarity=0.037 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCC-------CeEEEEeCCcchHHHHHHHHHhCCceEEE
Q 017726 41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPG-------DRIISFLIGQFSLLWIDQQQRLNFNVDVV 113 (367)
Q Consensus 41 ~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~g-------d~vl~~~~~~~~~~~~~~~~~~g~~~~~v 113 (367)
.....++++.+++++|.+. +++++||++|++.++.+++++| ..++.. ..|+... .......|...+.+
T Consensus 74 ~~~~~~le~~~a~l~g~~~---~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~-~~h~~t~-~~~~~~~g~~~~~~ 148 (465)
T d1ax4a_ 74 SRNYYDLKDKAKELFNYDY---IIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFIS-NFHFDTT-AAHVELNGCKAINI 148 (465)
T ss_dssp CHHHHHHHHHHHHHHCCCE---EEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEE-SSCCHHH-HHHHHHTTCEEEEC
T ss_pred ChHHHHHHHHHHHHHCCCE---EEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEec-cchhhhh-HHHHHHcCCeeecc
Confidence 3667799999999999754 8999999999999998765433 234444 3354432 23345567777655
Q ss_pred eC----------CCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccc-c---cHHHHHHHHHhcCCCcEEEEeeeec
Q 017726 114 ES----------DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT-N---NLSKVRKLLDEYRHPALFLVDGVSS 179 (367)
Q Consensus 114 ~~----------~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~-~---~~~~i~~~~~~~~~~~~vi~D~~~~ 179 (367)
.. +..+.+|+++++++|++.+...+.+++++..+|..|.. . ++++|+++|++ ||+++++|+++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~--~g~~l~~D~~~~ 226 (465)
T d1ax4a_ 149 VTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQ--HGIFVVMDSARF 226 (465)
T ss_dssp BCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHH--HTCCEEEECTTH
T ss_pred cccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHH--cCCEEEEECcch
Confidence 32 23467899999999987543445666777666666543 3 47789999999 999999999976
Q ss_pred cCceee------------------ccccccceEEEecCCCcccCCCcceeeeeCHHHH--HHhccCCCCceeechHHHHH
Q 017726 180 ICAIDF------------------RMDEWGIDVALTGSQKALSLPTGMGIVCASPKAL--EASKTAKSVRVFFDWKDYIK 239 (367)
Q Consensus 180 ~~~~~~------------------~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 239 (367)
.+.... +.. ...|++++|++|.+.++. .|+++.++... +..... ..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~d~~s~s~~k~~~~~~-~g~l~~~~~~~~~~~~~~~------------~~ 292 (465)
T d1ax4a_ 227 CENAYFIKARDPKYKNATIKEVIFDMY-KYADALTMSAKKDPLLNI-GGLVAIRDNEEIFTLARQR------------CV 292 (465)
T ss_dssp HHHHHHHHHHCGGGTTCCHHHHHHHHG-GGCSEEEEETTSTTCCSS-CEEEEESSCHHHHHHHHHH------------HH
T ss_pred hhhhcccccccccccccchhhhccccc-cccceeEeecccCccccc-ceeEeecchHHHHHhhhcc------------cc
Confidence 432110 011 126899999999986554 48888765432 111100 00
Q ss_pred HhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcCC---C
Q 017726 240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS---H 316 (367)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~---~ 316 (367)
...... ........ ++.+....+.+...+...++..++.++|.+.|++.|++++.+. ....+.+.... .
T Consensus 293 ~~~~~~-~~~~~~~~---~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~g~~~v~~~----~~~~~~~~~~~~~~~ 364 (465)
T d1ax4a_ 293 PMEGFV-TYGGLAGR---DMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPT----GGHAVFVDCKKLVPQ 364 (465)
T ss_dssp HHTCST-TTTTCCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCCBCSSC----CSSEEEEESTTTCTT
T ss_pred ccccCC-CcchhhHH---HHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhhcCccccCC----CcceeeeehhhhcCC
Confidence 001111 11122322 2221112222221244566677788999999999988887752 33333344311 1
Q ss_pred -----CCHHHHHHHHHhhCCeEEccCC------C-------CCCCcEEEEeecC-C--CCHHHHHHhhhhc
Q 017726 317 -----INSSEIVRRAWQRYNLSLGLGL------N-------KVAGKVFRIGHLG-H--LNEVMFNFQLLFQ 366 (367)
Q Consensus 317 -----~~~~~l~~~L~~~~gv~v~~g~------~-------~~~~~~iRi~~~~-~--~~~~~~~~~~l~~ 366 (367)
.....+...+..+.||...... . +.....+|++.-. . .++.|...+.|.+
T Consensus 365 ~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~ 435 (465)
T d1ax4a_ 365 IPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIG 435 (465)
T ss_dssp SCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHT
T ss_pred CccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHH
Confidence 1223444555556688764211 0 1123469998522 2 2344544555543
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=1.2e-16 Score=147.43 Aligned_cols=242 Identities=13% Similarity=0.052 Sum_probs=155.0
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCe--------EEEEeCCcchHHHHHHHHHhCCc
Q 017726 38 PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR--------IISFLIGQFSLLWIDQQQRLNFN 109 (367)
Q Consensus 38 ~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~--------vl~~~~~~~~~~~~~~~~~~g~~ 109 (367)
|+-.+...++++.+++++|.+. +++++||+.|++.++.+++.+|+. .++....|+... ...+...|..
T Consensus 70 Y~~~~~~~~le~~~a~l~G~~~---~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~G~~ 145 (467)
T d2v1pa1 70 FSGSRSYYALAESVKNIFGYQY---TIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTT-QGHSQINGCT 145 (467)
T ss_dssp SSSCHHHHHHHHHHHHHTCCSE---EEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHH-HHHHHHTTCE
T ss_pred hcCCchHHHHHHHHHHHHCCCE---EEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEeccccccc-HHHHHHcCCe
Confidence 4334667899999999999765 689999999999999876544332 233334455432 2445667898
Q ss_pred eEEEeCCC----------CCCCCHHHHHHHHhccCCCCccEEEEEecCCCccc-cc---cHHHHHHHHHhcCCCcEEEEe
Q 017726 110 VDVVESDW----------GEGAKLDVLASKLAADTAHTIKAICIVHNETATGV-TN---NLSKVRKLLDEYRHPALFLVD 175 (367)
Q Consensus 110 ~~~v~~~~----------~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~-~~---~~~~i~~~~~~~~~~~~vi~D 175 (367)
++.++.+. .+.+|++++++++++...++++++++...+|..|. +. ++++|.++|++ ||+++++|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~--~g~~l~~D 223 (467)
T d2v1pa1 146 VRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK--YDIPVVMD 223 (467)
T ss_dssp EEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH--TTCCEEEE
T ss_pred eeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHH--cCCEEEEe
Confidence 88887653 24579999999998764345788888888877764 33 57889999999 99999999
Q ss_pred eeeccCceee-----------cc------ccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHH
Q 017726 176 GVSSICAIDF-----------RM------DEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYI 238 (367)
Q Consensus 176 ~~~~~~~~~~-----------~~------~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (367)
+++.++.... +. .-..+|++++|.+|.+.++.| |+++.+++.+....... ....
T Consensus 224 ~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~g-g~i~~~~~~~~~~~~~~--------~~~~ 294 (467)
T d2v1pa1 224 SARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFFDVYTEC--------RTLC 294 (467)
T ss_dssp CTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGHHHHHHH--------HHHH
T ss_pred chhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCc-eeEEecchhhhhHHHhh--------cccc
Confidence 9976432110 00 012479999999999977665 88877766533222100 0000
Q ss_pred HHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCcccc
Q 017726 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCT 298 (367)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 298 (367)
...+ +....+..... ++.+....+.....++..++..++.+++.+.|++.+..+..
T Consensus 295 ~~~~-~~~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~~ 350 (467)
T d2v1pa1 295 VVQE-GFPTYGGLEGG---AMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQ 350 (467)
T ss_dssp HHTT-SSCCCCCCCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred cccc-cCcchhhhHHH---HHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhcCCcccC
Confidence 0011 11112223332 22222222222223456667788999999999998766654
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.1e-14 Score=130.88 Aligned_cols=296 Identities=18% Similarity=0.150 Sum_probs=188.2
Q ss_pred hHHHHHHHccCCCC--CCC-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC----------CCCCeE
Q 017726 21 PDQVIRAMNRNNED--YRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL----------SPGDRI 87 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~----------~~gd~v 87 (367)
++++.+++.++... +.. ........++.+.+.++.+.+ .+.+++||++|+..++.... ..+.++
T Consensus 59 ~p~i~~Av~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i 135 (404)
T d2byla1 59 HPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYH---KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKI 135 (404)
T ss_dssp CHHHHHHHHHHHTTCCCCCTTEEESSHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEE
T ss_pred CHHHHHHHHHHHhhCCCcccccccchHHHHHHhhhhccccc---ccccccCccccchhHHHHHHHHhhhccccccccccc
Confidence 55677776664332 111 112233456667777777653 48999999999999886421 123466
Q ss_pred EEEeCCcchHHHHHH------HHHhC-----CceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc-
Q 017726 88 ISFLIGQFSLLWIDQ------QQRLN-----FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN- 155 (367)
Q Consensus 88 l~~~~~~~~~~~~~~------~~~~g-----~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~- 155 (367)
+....++++...... ....+ ..+..+|.+ |++++++.+.+ ++..+|++.......|.+.+
T Consensus 136 ~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~~-----d~~~l~~~l~~---~~iAaviiEPi~g~~G~~~~~ 207 (404)
T d2byla1 136 VFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPALERALQD---PNVAAFMVEPIQGEAGVVVPD 207 (404)
T ss_dssp EEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECTT-----CHHHHHHHHTS---TTEEEEEECSSBTTTTSBCCC
T ss_pred cccCCCccccccceeccCCCcccccCCCCCCCCeeEeccc-----CHHHHHHhcCC---CCeEEEEECCccCCCCCccCC
Confidence 666666655321111 11111 123344433 78999999975 46778888877778887775
Q ss_pred ---HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCC-CcceeeeeCHHHHHHhccCC
Q 017726 156 ---LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAK 226 (367)
Q Consensus 156 ---~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~~~~ 226 (367)
+++|+++|++ +|+++|+||++..... .+.......|++++ .|.+++. ..+|.+++++++.+.+.+..
T Consensus 208 ~~~l~~l~~lc~~--~g~llI~DEV~tGfgR~G~~~a~~~~gv~PDi~~~--gK~l~gG~~p~~av~~~~~i~~~~~~~~ 283 (404)
T d2byla1 208 PGYLMGVRELCTR--HQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLL--GKALSGGLYPVSAVLCDDDIMLTIKPGE 283 (404)
T ss_dssp TTHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTTSSCCEEEEECHHHHTTSCTTS
T ss_pred HHHHHHHHHHHHh--cCeEEEeeccccccccccccchhhhcCCCCCEEEE--CchhhCCCccceeeeechhhhhccCCCC
Confidence 8899999999 9999999999864321 11222234688866 6888764 45799999999876665432
Q ss_pred CCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCC
Q 017726 227 SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSD 306 (367)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 306 (367)
. .+ .+..+...+++..++|+.+.++. ..++..++.+++.+.|+++.-+.+..-. -.+
T Consensus 284 ~---------------~~---T~~gnpl~~aaa~a~L~~i~~~~---l~~~~~~~g~~l~~~l~~l~~~~i~~vR--g~G 340 (404)
T d2byla1 284 H---------------FS---TYGGNPLGCRVAIAALEVLEEEN---LAENADKLGIILRNELMKLPSDVVTAVR--GKG 340 (404)
T ss_dssp S---------------CC---SSTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTSCTTTEEEEE--EET
T ss_pred C---------------Cc---CCCcCHHHHHHHHHHHHHHHhcC---chhhhhHhhHHHHHHHHhhccccceeee--ecc
Confidence 1 12 34567777788888899988875 3456777888999999886322222101 123
Q ss_pred ceEEEEcC--CCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 307 TVTAVIVP--SHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 307 ~~~~~~~~--~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
.+..+.+. +..+..++.++|.++ ||.+.+. .++.+|+++.-..+++|+
T Consensus 341 l~~~i~~~~~~~~~~~~~~~~l~~~-Gvl~~~~----~~~~i~l~PpL~it~~~i 390 (404)
T d2byla1 341 LLNAIVIKETKDWDAWKVCLRLRDN-GLLAKPT----HGDIIRFAPPLVIKEDEL 390 (404)
T ss_dssp TEEEEEECCCSSCCHHHHHHHHHHT-TEECEEE----ETTEEEECCCTTCCHHHH
T ss_pred cEEEEEEecCCchhHHHHHHHHHhC-CeEEecC----CCCEEEEECCcCCCHHHH
Confidence 35455543 345677899999765 9988652 246799987666665544
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.65 E-value=8.4e-15 Score=132.72 Aligned_cols=242 Identities=18% Similarity=0.113 Sum_probs=154.3
Q ss_pred hHHHHHHHccCCCCCC-CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCcchH
Q 017726 21 PDQVIRAMNRNNEDYR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQFSL 97 (367)
Q Consensus 21 ~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~~~~ 97 (367)
++++.+++.+...... .........++.+.+.+..... +.+.|++||++|++.++... .....+|+....+|++.
T Consensus 70 hp~i~~ai~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~--~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~ 147 (427)
T d2gsaa_ 70 HPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSI--EMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGH 147 (427)
T ss_dssp CHHHHHHHHHHHTTCSCCSSCCHHHHHHHHHHHHHSTTC--SEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCS
T ss_pred cHHHHHHHHHHHHhcCccccchhHHHHHHHHHHhhCCcc--ccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccC
Confidence 5677777776543311 1111233455666777665433 46899999999999988742 23456788887777763
Q ss_pred HH------HHHHHHhCC------------ceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----
Q 017726 98 LW------IDQQQRLNF------------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---- 155 (367)
Q Consensus 98 ~~------~~~~~~~g~------------~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~---- 155 (367)
.. ..-....+. +...++. .|++.++++++++. .++.+|++.......|.+.|
T Consensus 148 t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-----~~~~~le~~~~~~~-~~iaavi~Epi~g~~G~~~~~~~~ 221 (427)
T d2gsaa_ 148 ADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-----NDLEAVKALFAENP-GEIAGVILEPIVGNSGFIVPDAGF 221 (427)
T ss_dssp CGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECT-----TCHHHHHHHHTTST-TTEEEEEECSSBCSSSCBCCCTTH
T ss_pred cceeeeecCCcccccCCCCCCCCcccCccceeccCc-----chHHHHHHHHHhCC-CCeEEEEEcCCcCCCCCccCCHHH
Confidence 20 000111121 1222221 37999999999865 57788888887777888887
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeeccCce----eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCcee
Q 017726 156 LSKVRKLLDEYRHPALFLVDGVSSICAI----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF 231 (367)
Q Consensus 156 ~~~i~~~~~~~~~~~~vi~D~~~~~~~~----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~ 231 (367)
+++++++|++ +|+++|+||+++.+.. .........|+++.+ |.++|...+|.+++++++.+.+..... ..
T Consensus 222 l~~l~~lc~~--~~~llI~DEv~tG~r~g~~~~~~~~gi~PDi~~~g--K~lggG~p~~a~~~~~~i~~~~~~~~~--~~ 295 (427)
T d2gsaa_ 222 LEGLREITLE--HDALLVFDEVMTGFRIAYGGVQEKFGVTPDLTTLG--KIIGGGLPVGAYGGKREIMQLVAPAGP--MY 295 (427)
T ss_dssp HHHHHHHHHH--TTCEEEEECTTTBTTTBTTCHHHHTTCCCSEEEEC--GGGGTTSCCEEEEECHHHHTTBTTTSS--BC
T ss_pred HHHHHHHHHH--hceeeeeccccccceecccchHHhcCCCHHHHhhh--hccCCCcceeeeeehHHHHHHhcccCC--Cc
Confidence 9999999999 9999999999864311 111222357998884 677665556888999998876654211 01
Q ss_pred echHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc
Q 017726 232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW 292 (367)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 292 (367)
.+. .+..+...+++..++++.+.++++ .++..++.++|.+.|+++
T Consensus 296 -----------~~~--T~~gnpla~AAala~Le~i~~~~l---~~~~~~~g~~l~~~L~~l 340 (427)
T d2gsaa_ 296 -----------QAG--TLSGNPLAMTAGIKTLELLRQPGT---YEYLDQITKRLSDGLLAI 340 (427)
T ss_dssp -----------CCC--TTTTCHHHHHHHHHHHHHHTSTTH---HHHHHHHHHHHHHHHHHH
T ss_pred -----------CCC--CCCCCchhhHHHHHhhHHhhhhhH---HhhhhHHHHHHHHHHHHH
Confidence 121 345777777777778888877653 345666666666666553
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=4.6e-14 Score=127.66 Aligned_cols=308 Identities=14% Similarity=0.088 Sum_probs=190.3
Q ss_pred hHHHHHHHccCCCC--C--CCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccC-------CCCCeEEE
Q 017726 21 PDQVIRAMNRNNED--Y--RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-------SPGDRIIS 89 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~--~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~-------~~gd~vl~ 89 (367)
++++.+++.++... + ......+...++.+++.+...... +.+.+++||++|+..++.... .+..+|+.
T Consensus 61 ~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~ 139 (429)
T d1s0aa_ 61 HPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPL-ECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLT 139 (429)
T ss_dssp CHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTC-CEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEE
T ss_pred cHHHHHHHHHHHHhcCCcccCCccchHHHHHHHHHHhhhccCc-ceeeeccccccchhhhhhhhhheeecccccccEEEE
Confidence 56667766664321 1 111222445566677777765543 458999999999998885421 33457888
Q ss_pred EeCCcchHHHHHHHHHhC-------------CceEEEeCCCC---C---CCCHHHHHHHHhccCCCCccEEEEEecC-CC
Q 017726 90 FLIGQFSLLWIDQQQRLN-------------FNVDVVESDWG---E---GAKLDVLASKLAADTAHTIKAICIVHNE-TA 149 (367)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~---~---~~d~e~l~~~i~~~~~~~~~lv~~~~~~-n~ 149 (367)
...+|++..... ....+ ......+.... . ..+++++++.+.+.. +++.+|++.... +.
T Consensus 140 ~~~~yHG~t~~a-~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iaavivEPi~~~~ 217 (429)
T d1s0aa_ 140 FRNGYHGDTFGA-MSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHR-HEIAAVIIEPIVQGA 217 (429)
T ss_dssp ETTCCCCSSHHH-HTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHT-TTEEEEEECSSEECT
T ss_pred ecCCccccchhh-hhhcCCccccccccCccccccccccccccccccccchhhhhhhhhhhhhcC-CccceeeecceeccC
Confidence 888887753211 11111 11222222111 1 124556666666544 567788777654 44
Q ss_pred ccccc-c---HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCC-CcceeeeeCHHHH
Q 017726 150 TGVTN-N---LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKAL 219 (367)
Q Consensus 150 tG~~~-~---~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~ 219 (367)
.|... | +++|+++|++ +|+++|+||++..... .........|+++. .|.+++. ..+|.+++++++.
T Consensus 218 gg~~~~~~~fl~~lr~lc~~--~gillI~DEV~tGfGRtG~~~~~~~~~v~PDi~~~--gK~l~gG~~p~~av~~~~~i~ 293 (429)
T d1s0aa_ 218 GGMRMYHPEWLKRIRKICDR--EGILLIADEIATGFGRTGKLFACEHAEIAPDILCL--GKALTGGTMTLSATLTTREVA 293 (429)
T ss_dssp TTCEEBCTHHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTSSSCCEEEEECHHHH
T ss_pred CCccCCCHHHHHHHHHHHHH--cCcceehhhccccccccccccccccceeccccccc--ccccccccccccchhhHHHHH
Confidence 45544 3 7899999999 9999999999874321 11222335788887 5777443 5579999999998
Q ss_pred HHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc-CCcccc
Q 017726 220 EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCT 298 (367)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 298 (367)
+.+.......+.. +. .+..+...+++..++|+.++++ +..++..+..++|++.|+++ ....+.
T Consensus 294 ~~~~~~~~~~~~~-----------~~--T~~gnp~~~aaa~a~L~~i~~~---~~~~~~~~~g~~l~~~L~~l~~~~~v~ 357 (429)
T d1s0aa_ 294 ETISNGEAGCFMH-----------GP--TFMGNPLACAAANASLAILESG---DWQQQVADIEVQLREQLAPARDAEMVA 357 (429)
T ss_dssp HHHHTSTTSSCSC-----------CC--TTTTCHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHGGGGGCTTEE
T ss_pred hccCCCCCcceee-----------cC--CCCCCcccchhhhccccccccc---cccchhhHHHHHHHHHHHHhccCCceE
Confidence 8776432211111 11 3456677778888888888776 35667788889999999876 333332
Q ss_pred CCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
.- .-.+.+..+.+....+...+.+.+.++ |+.+.+. ++.+|+++.-..+++|+
T Consensus 358 ~v--rg~Gl~~~~e~~~~~~~~~~~~~~~~~-Gl~~~~~-----g~~i~~~Ppl~it~~ei 410 (429)
T d1s0aa_ 358 DV--RVLGAIGVVETTHPVNMAALQKFFVEQ-GVWIRPF-----GKLIYLMPPYIILPQQL 410 (429)
T ss_dssp EE--EEETTEEEEEESSCBCHHHHHHHHHHT-TEECCCB-----TTEEEECCCTTCCHHHH
T ss_pred EE--eecccEEEEEecCcccHHHHHHHHHHC-CcEEEec-----CCEEEEeCCcCCCHHHH
Confidence 10 023446667775556678898888765 9988642 46799987666665554
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=99.64 E-value=1.2e-13 Score=125.12 Aligned_cols=336 Identities=12% Similarity=0.051 Sum_probs=209.4
Q ss_pred CCCCChHHHHHHHccCCCC--CCCC-----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-------C
Q 017726 16 GPVHIPDQVIRAMNRNNED--YRSP-----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-------L 81 (367)
Q Consensus 16 ~p~~~~~~v~~a~~~~~~~--~~~~-----~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~-------~ 81 (367)
+.....+.+.+.+.+.... .+.| +..+..-|++.+|+++.|.+-.. .-.-.|+|.+-..++++. .
T Consensus 73 ~~~hy~P~v~~~~~~~~TaYTPYQPaEiSQG~LQalfEfQtmi~eLTGMdvaN-aS~yDGatA~aeA~~ma~r~~~~~~~ 151 (471)
T d1wyub1 73 CTMKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAIT-LEPAAGAHGELTGILIIRAYHEDRGE 151 (471)
T ss_dssp TCCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEE-CCCSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCccCcchhhhHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCccc-cccchHHHHHHHHHHHHHHHhhhccc
Confidence 4444566777777764333 2232 24566778999999999998432 223355554333333221 1
Q ss_pred CCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHH
Q 017726 82 SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRK 161 (367)
Q Consensus 82 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~ 161 (367)
.....+++..+.+.... .......+..++.++.+..+..+.+.+..+..+ .+..+++.+|++.-+.....+.+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~a~v~v~~p~~~g~~e~~~~~~~~ 226 (471)
T d1wyub1 152 GRTRRVVLVPDSAHGSN-PATASMAGYQVREIPSGPEGEVDLEALKRELGP----HVAALMLTNPNTLGLFERRILEISR 226 (471)
T ss_dssp TTTCCEEEEETTSCTHH-HHHHHHTTCEEEEECBCTTSSBCHHHHHHHCST----TEEEEEECSSCTTSCCCTTHHHHHH
T ss_pred ccccccccCCcccccce-eeeeecccceeecccccccccccchhhhhhhhc----cccceeeccCCCcccccchhhhhHH
Confidence 12234455555555543 234556788888888887888899999888763 5577777777655544456889999
Q ss_pred HHHhcCCCcEEEEeeeeccCce-eeccccccceEEEecCCCcccCC-----CcceeeeeCHHHHHHhccCCCC---ceee
Q 017726 162 LLDEYRHPALFLVDGVSSICAI-DFRMDEWGIDVALTGSQKALSLP-----TGMGIVCASPKALEASKTAKSV---RVFF 232 (367)
Q Consensus 162 ~~~~~~~~~~vi~D~~~~~~~~-~~~~~~~~~d~~~~s~~K~~~g~-----~g~g~~~~~~~~~~~~~~~~~~---~~~~ 232 (367)
++++ .+..+++|.+...... -......+.|+++...++.|+.| +++|++.+++++++++...... ..+.
T Consensus 227 ~~h~--~g~~~~~~~~~~~~~~~l~~p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~ 304 (471)
T d1wyub1 227 LCKE--AGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFY 304 (471)
T ss_dssp HHHH--HTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEE
T ss_pred HHHh--ccccccccccchhhhhhccccCcccccccccccccccccccccccccccceeehhhhhccCCCceecCCCcccc
Confidence 9999 8888888865432221 12223346788888888876433 5679999999998877754321 1111
Q ss_pred chHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEE
Q 017726 233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVI 312 (367)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~ 312 (367)
.... .....++.-..|.+.+...+....+.++..+|++++.+++.+++.|++++|+..|+++..+.+ +.. -+.++
T Consensus 305 ~~~~--REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~~G~~~~~~~~-ff~--EFvv~ 379 (471)
T d1wyub1 305 LDFD--RPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDGP-SMH--EFVAQ 379 (471)
T ss_dssp EECC--CTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSS-CCS--CEEEB
T ss_pred ccCC--CcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhhcCceeccCcc-eee--EEeec
Confidence 0000 111111111234555544555556778889999999999999999999999888988765433 222 24566
Q ss_pred cCCCCCHHHHHHHHHhhCCeEEccCCCCC-CCcEEEEeecCCCCHHH--HHHhhhh
Q 017726 313 VPSHINSSEIVRRAWQRYNLSLGLGLNKV-AGKVFRIGHLGHLNEVM--FNFQLLF 365 (367)
Q Consensus 313 ~~~~~~~~~l~~~L~~~~gv~v~~g~~~~-~~~~iRi~~~~~~~~~~--~~~~~l~ 365 (367)
.+.+++..++.++|.++ |+.-.....+. ..+.+-|+.--..+.+| .+.++|+
T Consensus 380 ~~~~~~~~~i~k~L~~~-G~~~~~~~~p~~~~~~llv~vTE~~tkedID~lv~aL~ 434 (471)
T d1wyub1 380 PPEGFRALDLAKGLLEL-GFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMG 434 (471)
T ss_dssp CSTTCCHHHHHHHHHHT-TCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHc-CCCCCcccCcCCCCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 77778888999999865 87543222332 34568888655666554 4444443
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=1.3e-13 Score=124.86 Aligned_cols=309 Identities=17% Similarity=0.102 Sum_probs=182.3
Q ss_pred ChHHHHHHHccCCCC--CC--CCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCC
Q 017726 20 IPDQVIRAMNRNNED--YR--SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIG 93 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--~~--~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~ 93 (367)
-++++.+++.++... +. .....+...++-+.+.+.+.-...+.+.+++||++|++.+++.. .....+|+....+
T Consensus 57 ~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~ 136 (425)
T d1sffa_ 57 LHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGA 136 (425)
T ss_dssp TCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTC
T ss_pred CcHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhhhhcccceEeecCC
Confidence 356777777775443 21 11223455678888888886554456899999999999988642 2345678888888
Q ss_pred cchHHHHHHHHHhC-------------CceEEEeCCCC--CCCC---HHHHHHHHh--ccCCCCccEEEEEecCCCcccc
Q 017726 94 QFSLLWIDQQQRLN-------------FNVDVVESDWG--EGAK---LDVLASKLA--ADTAHTIKAICIVHNETATGVT 153 (367)
Q Consensus 94 ~~~~~~~~~~~~~g-------------~~~~~v~~~~~--~~~d---~e~l~~~i~--~~~~~~~~lv~~~~~~n~tG~~ 153 (367)
|++....... ..| ......+.+.. .... .+..++++. ... ..+.+|++.......|.+
T Consensus 137 yHG~t~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vaavi~EPi~g~~G~~ 214 (425)
T d1sffa_ 137 YHGRTHYTLA-LTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAP-EDIAAIVIEPVQGEGGFY 214 (425)
T ss_dssp CCCSSHHHHH-HSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCG-GGEEEEEECSBCTTTTSC
T ss_pred CcCccccchh-hcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhcccc-cceEEEEecCccCCCCcc
Confidence 8875421111 111 11122222111 1110 111222211 111 356788888877778877
Q ss_pred cc----HHHHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhcc
Q 017726 154 NN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKT 224 (367)
Q Consensus 154 ~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~ 224 (367)
.+ ++.|+++|++ +|+++|+||+++.... ........+|+++. +|.++|...+|.+++++++.+.+..
T Consensus 215 ~~~~~~l~~l~~lc~~--~gillI~DEV~tG~gR~g~~~a~~~~gv~PDi~~~--gK~l~gG~P~~av~~~~~i~~~~~~ 290 (425)
T d1sffa_ 215 ASSPAFMQRLRALCDE--HGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTF--AKSIAGGFPLAGVTGRAEVMDAVAP 290 (425)
T ss_dssp BCCHHHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEE--CGGGGTSSCCEEEEEEHHHHTTSCT
T ss_pred cCCHHHHHHHHHHHHH--cCceEEeccccccCCCcchhhHHHhcCCCccceec--ccccCCCcceEEEEEcHHHHHhhCC
Confidence 64 7789999999 9999999999874211 11222345788886 6888766568999999998776653
Q ss_pred CCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCc
Q 017726 225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEE 302 (367)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~ 302 (367)
... +. .++.+...+++..++|+.+.+..+ .++...+.+++.+.|++. ..++...-.
T Consensus 291 ~~~----------------~~--T~~gnpl~~aaa~a~L~~i~~~~~---~~~~~~~g~~l~~~l~~~~~~~~~v~~vr- 348 (425)
T d1sffa_ 291 GGL----------------GG--TYAGNPIACVAALEVLKVFEQENL---LQKANDLGQKLKDGLLAIAEKHPEIGDVR- 348 (425)
T ss_dssp TSB----------------CC--SSSSCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHTCTTEEEEE-
T ss_pred CCC----------------CC--CCCcCHHHHHHHHHHHHHHHHhhh---hhhhhhhhhhhhhhhhhhHhhCCceEEEE-
Confidence 211 21 345667777888888999888753 334555566666665553 232222100
Q ss_pred cCCCceEEEEcCC----CC-C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHHH
Q 017726 303 WFSDTVTAVIVPS----HI-N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMFN 360 (367)
Q Consensus 303 ~~~~~~~~~~~~~----~~-~---~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~~ 360 (367)
..+.++.+.+.+ .. + ...+.+.+.++ ||.+.+.. ..++.+|+++.-..+++|+.
T Consensus 349 -g~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~-Gvl~~~~g--~~~n~i~~~PpL~it~~eid 410 (425)
T d1sffa_ 349 -GLGAMIAIELFEDGDHNKPDAKLTAEIVARARDK-GLILLSCG--PYYNVLRILVPLTIEDAQIR 410 (425)
T ss_dssp -EETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHT-TEECEEES--TTSCEEEECCCTTCCHHHHH
T ss_pred -ccccEEEEEEeccCccCCccHHHHHHHHHHHHHC-CCEEeccC--CCCCEEEEECCCCCCHHHHH
Confidence 123345554411 11 1 24577777655 99887532 12467999876666665443
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.60 E-value=9.7e-13 Score=118.12 Aligned_cols=301 Identities=16% Similarity=0.066 Sum_probs=172.6
Q ss_pred hHHHHHHHccCCCC--CCCC-cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc----------CCCCCeE
Q 017726 21 PDQVIRAMNRNNED--YRSP-AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT----------LSPGDRI 87 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~----------~~~gd~v 87 (367)
.+++.+++.++... +... ........+.+.+.++.+.+ .+.++.+|++|+..++... ......+
T Consensus 57 ~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~ 133 (404)
T d1z7da1 57 HPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLLGYD---KVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKI 133 (404)
T ss_dssp CHHHHHHHHHHHTTCSCCCTTSEEHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEE
T ss_pred cHHHHHHHHHHHHhCCCcccccchHHHHHHHHhhhhccccc---eeeeeccccchHHHHHHHHHHHHhhccccccccccc
Confidence 56777777764332 1111 11244556677777777643 4889999999999877531 1223356
Q ss_pred EEEeCCcchHHHHHHHH--HhCCceEEEeCCCC-C---CCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----HH
Q 017726 88 ISFLIGQFSLLWIDQQQ--RLNFNVDVVESDWG-E---GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LS 157 (367)
Q Consensus 88 l~~~~~~~~~~~~~~~~--~~g~~~~~v~~~~~-~---~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~ 157 (367)
+....++++........ ....+....+.... . .-+.+.++..+.+ +++.+|++.......|.+.+ ++
T Consensus 134 ~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~iAavi~EPi~g~~G~~~~~~~fl~ 210 (404)
T d1z7da1 134 VVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKD---PNVCAFIVEPIQGEAGVIVPSDNYLQ 210 (404)
T ss_dssp EEETTC--------------------------CEEEECTTCHHHHHHHHTS---TTEEEEEECSSBSTTTSBCCCTTHHH
T ss_pred ccccccCCCCcccccccccccccccCCCCCCccccccccchHHHHHHHhcC---CCEEEEEEEEEcCCCCCccCCHHHHH
Confidence 66666555542111111 11111011111100 0 1156677776654 46788888888888888876 89
Q ss_pred HHHHHHHhcCCCcEEEEeeeeccCce-----eeccccccceEEEecCCCcccCC-CcceeeeeCHHHHHHhccCCCCcee
Q 017726 158 KVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVF 231 (367)
Q Consensus 158 ~i~~~~~~~~~~~~vi~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~-~g~g~~~~~~~~~~~~~~~~~~~~~ 231 (367)
+|+++|++ +|+++|+||+++.... .+......+|+++. +|.+++. ..+|.+++++++.+.+.+...
T Consensus 211 ~l~~lc~~--~g~llI~DEV~tGfgRtG~~~~~e~~gv~PDivt~--gK~l~gG~~p~~~v~~~~~i~~~~~~~~~---- 282 (404)
T d1z7da1 211 GVYDICKK--YNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILL--GKALSGGHYPISAVLANDDIMLVIKPGEH---- 282 (404)
T ss_dssp HHHHHHHH--TTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTTSSCCEEEEECHHHHTTCCTTCC----
T ss_pred HHHHHHHH--cCCEEEEEcCccCCCcccccccccccCCCCCEEEE--cccccCCCCCcccccchHHHHccCCCCCc----
Confidence 99999999 9999999999863211 11222335788866 6888654 447999999998776654311
Q ss_pred echHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCCceE
Q 017726 232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVT 309 (367)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~ 309 (367)
+. .++.+...+++..++|+.+.++.+ .++..+..+.+.+.|.+. ..+++..-. ..+.+.
T Consensus 283 ------------~~--T~~gnpl~~aaa~a~L~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~v~~vr--g~Gl~~ 343 (404)
T d1z7da1 283 ------------GS--TYGGNPLAASICVEALNVLINEKL---CENAEKLGGPFLENLKRELKDSKIVRDVR--GKGLLC 343 (404)
T ss_dssp ------------CC--TTTTCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHTTCTTEEEEE--EETTEE
T ss_pred ------------Cc--CCCCCcchhhhhhhhhhhhhcchh---hhhhccchhHHHHHHHHHHhcCCCeEEEE--eeCcEE
Confidence 11 345667777778888888777653 333444444555444442 223322100 123456
Q ss_pred EEEcCCC-CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 310 AVIVPSH-INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 310 ~~~~~~~-~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
.+.+.++ .+..++++.|.++ |+.+.+. .++.+|+.+.-..+++++
T Consensus 344 ~i~~~~~~~~~~~~~~~l~~~-Gl~~~~~----~~~~ir~~Ppl~it~~~i 389 (404)
T d1z7da1 344 AIEFKNELVNVLDICLKLKEN-GLITRDV----HDKTIRLTPPLCITKEQL 389 (404)
T ss_dssp EEEECTTTCCHHHHHHHHHHT-TEECCEE----TTTEEEECCCTTCCHHHH
T ss_pred EEEEcCCcccHHHHHHHHHhC-CeEEecC----CCCEEEEECCcCCCHHHH
Confidence 6666433 4566788888765 9987642 246799987555555543
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.59 E-value=1.9e-13 Score=121.87 Aligned_cols=295 Identities=14% Similarity=0.101 Sum_probs=183.1
Q ss_pred hHHHHHHHccCCCC--CCCCc-HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCcc
Q 017726 21 PDQVIRAMNRNNED--YRSPA-VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQF 95 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~~~~-~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~~ 95 (367)
.+++.+++.++... +.... ..+...++.+.+.+.... ..+.+.+++||++|+..+++.. .....+|+....+|+
T Consensus 55 hp~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~-~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yH 133 (387)
T d1vefa1 55 NPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPP-ELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFS 133 (387)
T ss_dssp CHHHHHHHHHHHHHCCCCCTTSCCHHHHHHHHHHHHTSCT-TEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCC
T ss_pred cHHHHHHHHHHHHhhcccccccCCchHHHHHHHhhhhccc-cceeeccccCchHHHHHHHHHHHhhcccceecccccCCC
Confidence 45556665553321 11111 123334444444443322 2245899999999999988642 234567888888777
Q ss_pred hHHHHHHHHHhC------------CceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCcccccc----HHHH
Q 017726 96 SLLWIDQQQRLN------------FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKV 159 (367)
Q Consensus 96 ~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~----~~~i 159 (367)
+...... ...| .++..+|.+ |.+.+++.++ +++.+|++.......|...+ ++++
T Consensus 134 G~t~~~~-~~s~~~~~~~~~~p~~~~~~~~p~~-----d~~~l~~~~~----~~iAavi~EPi~g~~G~~~~~~~~l~~l 203 (387)
T d1vefa1 134 GRTMGSL-SVTWEPKYREPFLPLVEPVEFIPYN-----DVEALKRAVD----EETAAVILEPVQGEGGVRPATPEFLRAA 203 (387)
T ss_dssp CSSHHHH-HTCCCHHHHGGGCSCSSCEEEECTT-----CHHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHH
T ss_pred CCccceE-eccCCccccCCCCCCCCCceEeCCC-----CHHHHHHhcC----CCeEEEEEECCCCCCCCccCCHHHHHHH
Confidence 7432111 1111 123444433 7899999887 45688888887777888776 8899
Q ss_pred HHHHHhcCCCcEEEEeeeeccCcee-----eccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeech
Q 017726 160 RKLLDEYRHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDW 234 (367)
Q Consensus 160 ~~~~~~~~~~~~vi~D~~~~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 234 (367)
+++|++ +|+++|.||+++..... .......+|+++. .|.++|...++.+.++++..+.+.+...
T Consensus 204 ~~lc~~--~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~~--gK~l~gG~~~~~~~~~~~~~~~~~~~~~------- 272 (387)
T d1vefa1 204 REITQE--KGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTL--AKALGGGVPLGVAVMREEVARSMPKGGH------- 272 (387)
T ss_dssp HHHHHH--HTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEE--CGGGGTTSSCEEEEEEHHHHHTSCTTSS-------
T ss_pred HHHHHH--cCceEEecccccccCccCCCcccccCCcCCceeee--cccCCCCccccccccceeeeeccccCCc-------
Confidence 999999 99999999998643111 1111234788888 5888766556888888888766654321
Q ss_pred HHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCCceEEEEcC
Q 017726 235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVP 314 (367)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 314 (367)
+. .++.+...+++..+.++.+.+.. ..++..+..+++.+.|+++.-+.+..-. ..+.+..+.+.
T Consensus 273 ---------g~--T~~gnPla~aaa~a~L~~l~~~~---~~~~v~~~g~~l~~~L~~l~~~~v~~vr--g~Gl~~~ie~~ 336 (387)
T d1vefa1 273 ---------GT--TFGGNPLAMAAGVAAIRYLERTR---LWERAAELGPWFMEKLRAIPSPKIREVR--GMGLMVGLELK 336 (387)
T ss_dssp ---------CC--SSTTCHHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHTSCCTTEEEEE--EETTEEEEEES
T ss_pred ---------cc--cCCCCcchhhhcccchhhccccc---ccchHhhhhHHHHHHHHhcCCCceEEEe--ecceEEEEEEe
Confidence 22 34567777788888888887764 3456777888999999886322222100 12346667773
Q ss_pred CCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 315 SHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 315 ~~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
......+.+.+.++ |+.+.+. .++.+|+.+.-..+++++
T Consensus 337 -~~~~~~~~~~~~~~-g~l~~~~----g~~~ir~~Ppl~it~~~l 375 (387)
T d1vefa1 337 -EKAAPYIARLEKEH-RVLALQA----GPTVIRFLPPLVIEKEDL 375 (387)
T ss_dssp -SCSHHHHHHHHHHH-CEECEES----STTEEEECCCTTCCHHHH
T ss_pred -CCchHHHHHHHHHC-CCeEEec----CCCEEEEECCccCCHHHH
Confidence 33455666666555 7766542 245799987655666554
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.54 E-value=2.7e-12 Score=116.30 Aligned_cols=311 Identities=13% Similarity=0.088 Sum_probs=175.5
Q ss_pred hHHHHHHHccCCCC--CCC-CcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc--CCCCCeEEEEeCCcc
Q 017726 21 PDQVIRAMNRNNED--YRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQF 95 (367)
Q Consensus 21 ~~~v~~a~~~~~~~--~~~-~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~--~~~gd~vl~~~~~~~ 95 (367)
++++.+++.++... +.. ........++-++|.+...-. -+.+.|++||++|++.++... ....++|+....+|+
T Consensus 59 ~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~~-~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yH 137 (431)
T d1zoda1 59 HPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPG-LDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWH 137 (431)
T ss_dssp CHHHHHHHHHHHHHCCCCCTTCCCHHHHHHHHHHHHHSCTT-CCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCC
T ss_pred CHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhCCcc-cceeeecccccchHHHHHHHHHHhcCCcceeecccccc
Confidence 45666666654321 111 111234456777777766422 245899999999999988642 234567888888787
Q ss_pred hHHHHHHHHHhC-----------CceEEEeCCCCCC---------C---CHHHHHHHHhccCCCCccEEEEEecCCCccc
Q 017726 96 SLLWIDQQQRLN-----------FNVDVVESDWGEG---------A---KLDVLASKLAADTAHTIKAICIVHNETATGV 152 (367)
Q Consensus 96 ~~~~~~~~~~~g-----------~~~~~v~~~~~~~---------~---d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~ 152 (367)
+...... ...+ .....++...... . +.+.+...+.+....++.+|++.......|.
T Consensus 138 G~t~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~ 216 (431)
T d1zoda1 138 GMTGAAA-SATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGI 216 (431)
T ss_dssp CSSHHHH-HTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTC
T ss_pred cccchhh-cccccccccccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCc
Confidence 7532111 1111 1223333222111 0 1234444433322246788888887777777
Q ss_pred ccc----HHHHHHHHHhcCCCcEEEEeeeecc-Cce----eeccccccceEEEecCCCcccCCCcceeeeeCHHHHHHhc
Q 017726 153 TNN----LSKVRKLLDEYRHPALFLVDGVSSI-CAI----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASK 223 (367)
Q Consensus 153 ~~~----~~~i~~~~~~~~~~~~vi~D~~~~~-~~~----~~~~~~~~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~ 223 (367)
+.+ +++|+++|++ +|+++|.||++.. +-. .........|+++. .|.++|...++.++++++..+...
T Consensus 217 ~~~~~~yl~~lr~lc~~--~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~~--gK~l~gG~p~~av~~~~~~~~~~~ 292 (431)
T d1zoda1 217 IELPDGYMAALKRKCEA--RGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTL--SKTLGAGLPLAAIVTSAAIEERAH 292 (431)
T ss_dssp EECCTTHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEE--CHHHHTTSSCEEEEECHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHh--cCceEEeccccccccccccccccccCCCCcchhcc--ccccccccccceeeeeecchhhhh
Confidence 765 8999999999 9999999999874 211 11222335788887 588876655688888888766554
Q ss_pred cCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHc--CCccccCCC
Q 017726 224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKE 301 (367)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~ 301 (367)
.... ..+. .++.+..++++..++++.++++.+ .++..+..+++.+.+++. ...++..-.
T Consensus 293 ~~~~--------------~~~~--T~~g~pl~~aaa~a~l~~i~~~~~---~~~~~~~g~~l~~~l~~~~~~~~~i~~vr 353 (431)
T d1zoda1 293 ELGY--------------LFYT--THVSDPLPAAVGLRVLDVVQRDGL---VARANVMGDRLRRGLLDLMERFDCIGDVR 353 (431)
T ss_dssp HTTC--------------CCCC--TTTTCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred cccc--------------cccC--CCCCCcchHHHHHHHHHHhhhhhh---hHHHHHHHHHHhhhhhhhhhcCCCeEEEe
Confidence 3211 0111 345677777788888888887752 334444455555544442 122222100
Q ss_pred ccCCCceEEEEcC---C-----CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecCCCCHHHH
Q 017726 302 EWFSDTVTAVIVP---S-----HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEVMF 359 (367)
Q Consensus 302 ~~~~~~~~~~~~~---~-----~~~~~~l~~~L~~~~gv~v~~g~~~~~~~~iRi~~~~~~~~~~~ 359 (367)
..+.++.+.+. . ..-..++.+.+.++ |+....-..+..++.+|+++....+++++
T Consensus 354 --G~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~-Gl~~~~~~~~~~~~~i~l~Ppl~it~~ei 416 (431)
T d1zoda1 354 --GRGLLLGVEIVKDRRTKEPADGLGAKITRECMNL-GLSMNIVQLPGMGGVFRIAPPLTVSEDEI 416 (431)
T ss_dssp --EETTEEEEEEEEETTTTEECTTHHHHHHHHHHHT-TEECCEECCTTSCCEEEECCCTTCCHHHH
T ss_pred --ecceEEEEEEecCCcccCccHHHHHHHHHHHHHh-CcccCeeeecCCCCEEEEECCCCCCHHHH
Confidence 12234444331 1 11135677777655 88654322333467899987666665543
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.38 E-value=1.9e-11 Score=111.32 Aligned_cols=299 Identities=12% Similarity=0.096 Sum_probs=169.1
Q ss_pred ChHHHHHHHccCCCC--------CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHcc-----------
Q 017726 20 IPDQVIRAMNRNNED--------YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT----------- 80 (367)
Q Consensus 20 ~~~~v~~a~~~~~~~--------~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~----------- 80 (367)
-++++.+++.+.... ..........+++.+.+.+..... .+.+++++||++|+..++...
T Consensus 70 ~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~~a~~lae~l~~~~~~~-~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~ 148 (461)
T d1ohwa_ 70 SHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKG-MSQLITMACGSCSNENAFKTIFMWYRSKERGQ 148 (461)
T ss_dssp TCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTT-CCEEEEESSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHhhhhhcccccccccchHHHHHHHHHHHHhhhccC-cceeeeecchhhhhHHHHHHHHHHhhhcccCc
Confidence 356788888875421 111111223344544444443333 346899999999999887532
Q ss_pred -----------------CCCCCeEEEEeCCcchHHHHHHHHHhCC-----------ceEEEeCCC-CCC-----------
Q 017726 81 -----------------LSPGDRIISFLIGQFSLLWIDQQQRLNF-----------NVDVVESDW-GEG----------- 120 (367)
Q Consensus 81 -----------------~~~gd~vl~~~~~~~~~~~~~~~~~~g~-----------~~~~v~~~~-~~~----------- 120 (367)
..+..+|+....+|++...... ...|- .....+... ...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~-s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (461)
T d1ohwa_ 149 SAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCL-ATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQE 227 (461)
T ss_dssp CCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHH-HTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHH
T ss_pred ccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccc-cccCCcccccccccccCCcccccccccccccccccccchh
Confidence 1234468888888887532111 11111 111111111 000
Q ss_pred --CCHHHHHHHHh---ccCCCCccEEEEEecCCCcccccc----HHHHHHHHHhcCCCcEEEEeeeeccCcee---eccc
Q 017726 121 --AKLDVLASKLA---ADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAID---FRMD 188 (367)
Q Consensus 121 --~d~e~l~~~i~---~~~~~~~~lv~~~~~~n~tG~~~~----~~~i~~~~~~~~~~~~vi~D~~~~~~~~~---~~~~ 188 (367)
.+.+++++.+. ++. .++.+|++.......|.+.+ +++|+++|++ +|+++|+||++...... +..+
T Consensus 228 ~~~~~~~l~~~~~~~~~~~-~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~--~gillI~DEV~tG~gRtG~~~~~e 304 (461)
T d1ohwa_ 228 EARCLEEVEDLIVKYRKKK-KTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRK--HGCAFLVDEVQTGGGSTGKFWAHE 304 (461)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHH--TTCEEEEECTTTCSSTTSSSSGGG
T ss_pred hhhhHHHHHHHHHHHHhCC-CccceeeeccccccccccCchhhHHHHHHHHHHh--hCcceecccccccccccccccccc
Confidence 11344555443 233 56788899988888887764 7889999999 99999999998643211 2222
Q ss_pred c--c--cceEEEecCCCcccCCCcceeeeeCHHHHHHhccCCCCceeechHHHHHHhhcCCccCCCCcHHHHHHHHHHHH
Q 017726 189 E--W--GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALD 264 (367)
Q Consensus 189 ~--~--~~d~~~~s~~K~~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~ 264 (367)
. . .+|+++. .|.+++ |+...+..+. ..... ..+. .+..+...+++..++|+
T Consensus 305 ~~gi~~~PDiv~~--gK~l~~----g~~~~~~~~~-~~~~~----------------~~~~--T~~g~p~~~aaa~a~l~ 359 (461)
T d1ohwa_ 305 HWGLDDPADVMTF--SKKMMT----GGFFHKEEFR-PNAPY----------------RIFN--TWLGDPSKNLLLAEVIN 359 (461)
T ss_dssp GGCCSSCCSEEEE--CGGGSS----EEEEECGGGS-CSSTT----------------SSCC--SCSSCHHHHHHHHHHHH
T ss_pred ccccccCchhhhh--hhcccc----cccccccccc-ccccc----------------cccc--ccccccccchhhcccch
Confidence 1 1 2688866 577642 4444433221 11100 0111 23455667777778888
Q ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHc--CC-ccccCCCccCCCceEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC
Q 017726 265 LIFEEGLENVIERHRRLGKATRLAVEAW--GL-KNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV 341 (367)
Q Consensus 265 ~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~g~~~~ 341 (367)
.+.+++ +.++..+..++|.+.|+++ .. .++..-. -.+.++.+.+++.....++++.+.++ |+.+.+.
T Consensus 360 ~i~~~~---l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vr--G~Gl~~~ie~~~~~~~~~i~~~~~~~-Gll~~~~---- 429 (461)
T d1ohwa_ 360 IIKRED---LLSNAAHAGKVLLTGLLDLQARYPQFISRVR--GRGTFCSFDTPDESIRNKLISIARNK-GVMLGGC---- 429 (461)
T ss_dssp HHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTTCEEEE--EETTEEEEECSSHHHHHHHHHHHHHT-TEECEEE----
T ss_pred hhhhhh---HHHHHHHHHHHHHHHHHHHHhhCCCceEEee--eeeEEEEEEcCCHHHHHHHHHHHHHC-CeEEeeC----
Confidence 888765 3446666777777777765 22 1222100 13446778775443456788888765 9988652
Q ss_pred CCcEEEEeecCCCCHHH
Q 017726 342 AGKVFRIGHLGHLNEVM 358 (367)
Q Consensus 342 ~~~~iRi~~~~~~~~~~ 358 (367)
.++.||+.+....++++
T Consensus 430 ~~~~ir~~PpL~it~~e 446 (461)
T d1ohwa_ 430 GDKSIRFRPTLVFRDHH 446 (461)
T ss_dssp TTTEEECCCCTTCCHHH
T ss_pred CCCEEEEeCCcCCCHHH
Confidence 24679998766666554
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.01 E-value=2.4 Score=32.27 Aligned_cols=151 Identities=12% Similarity=0.128 Sum_probs=71.5
Q ss_pred CChHHHHHHHccCCCC-CCCCcHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchH
Q 017726 19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSL 97 (367)
Q Consensus 19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~ 97 (367)
.-|+++++++.++... ...........++-..+.+..+. ..|+=.+++++.-.+.+...+.++.+|++.+..-...
T Consensus 18 ~~p~~vl~~~~~~~~~~~~~m~i~~~~G~lL~~lv~~~kp---k~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~ 94 (214)
T d2cl5a1 18 GDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSP---SLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYA 94 (214)
T ss_dssp TCHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHCC---SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHH
T ss_pred CCHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHhhCC---CEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHH
Confidence 3457888888775432 22222334444565556666553 3466656555443333444456677888877632221
Q ss_pred -HHHHHHHHhCCc--eEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEE
Q 017726 98 -LWIDQQQRLNFN--VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLV 174 (367)
Q Consensus 98 -~~~~~~~~~g~~--~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~ 174 (367)
......+..|.. +..+.-+ ..+.+.+...+.......+|++.+.+ ... .+...+.+..+..+.|.+|++
T Consensus 95 ~~a~~~~~~~gl~~~i~l~~Gd-----~~e~l~~l~~~~~~~~~D~ifiD~~~--~~~-~~~~~l~~~~~lLkpGGvIv~ 166 (214)
T d2cl5a1 95 AITQQMLNFAGLQDKVTILNGA-----SQDLIPQLKKKYDVDTLDMVFLDHWK--DRY-LPDTLLLEKCGLLRKGTVLLA 166 (214)
T ss_dssp HHHHHHHHHHTCGGGEEEEESC-----HHHHGGGHHHHSCCCCEEEEEECSCG--GGH-HHHHHHHHHTTCEEEEEEEEE
T ss_pred HHHHHHHHHcCCCccceeeecc-----ccccccchhhcccccccceeeecccc--ccc-ccHHHHHHHhCccCCCcEEEE
Confidence 122334555642 3333211 12222222222111245677776432 111 122234333333336778889
Q ss_pred eeeecc
Q 017726 175 DGVSSI 180 (367)
Q Consensus 175 D~~~~~ 180 (367)
|.+...
T Consensus 167 Ddvl~~ 172 (214)
T d2cl5a1 167 DNVIVP 172 (214)
T ss_dssp SCCCCC
T ss_pred eCcCCC
Confidence 976543
|
| >d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methionine synthase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=80.99 E-value=3.3 Score=29.70 Aligned_cols=71 Identities=8% Similarity=0.031 Sum_probs=49.6
Q ss_pred eEEEEeCC--cchH---HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhccCCCCccEEEEEecCCCccccccHHHHH
Q 017726 86 RIISFLIG--QFSL---LWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVR 160 (367)
Q Consensus 86 ~vl~~~~~--~~~~---~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~~~~~~~lv~~~~~~n~tG~~~~~~~i~ 160 (367)
+|++..++ .+.. ....+++..|.+++.+-.+ ..++++.+++.+ .++++|.++.- .+..+..++++.
T Consensus 8 kivi~tv~gD~HdiG~~iv~~~l~~~G~~Vi~LG~~----~p~e~~~~~~~~---~~~d~i~lS~l--~~~~~~~~~~~~ 78 (156)
T d3bula2 8 KMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVM----VPAEKILRTAKE---VNADLIGLSGL--ITPSLDEMVNVA 78 (156)
T ss_dssp EEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSS----BCHHHHHHHHHH---HTCSEEEEECC--STHHHHHHHHHH
T ss_pred EEEEEeeCCChhhHHHHHHHHHHHHCCCEEEECCCC----CCHHHHHHHHHh---hCCCEEEEecc--cccchHHHHHHH
Confidence 55555552 2322 2456778889988877654 568888888887 46789988874 344556688999
Q ss_pred HHHHh
Q 017726 161 KLLDE 165 (367)
Q Consensus 161 ~~~~~ 165 (367)
+.+++
T Consensus 79 ~~l~~ 83 (156)
T d3bula2 79 KEMER 83 (156)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99988
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.48 E-value=8.1 Score=27.73 Aligned_cols=107 Identities=12% Similarity=0.038 Sum_probs=59.2
Q ss_pred HhcCCCCceEEecCChhHHHHHHHHccCCCCCeEEEEeCCcchHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcc
Q 017726 54 IFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAAD 133 (367)
Q Consensus 54 ~~~~~~~~~v~~~~ggt~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~e~l~~~i~~~ 133 (367)
..+..+.+.|++.+.|.-++..+..+......+|++.+. ...+. ..++.+|++....+.+. +.++..+.++..
T Consensus 21 ~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~--~~~rl-~~a~~~Ga~~~~~~~~~----~~~~~~~~~~~~ 93 (171)
T d1pl8a2 21 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDL--SATRL-SKAKEIGADLVLQISKE----SPQEIARKVEGQ 93 (171)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES--CHHHH-HHHHHTTCSEEEECSSC----CHHHHHHHHHHH
T ss_pred HhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccC--CHHHH-HHHHHhCCccccccccc----cccccccccccc
Confidence 346666666777777766655544332223346777766 22332 56788898876665432 455555555442
Q ss_pred CCCCccEEEEEecCCCccccccHHHHHHHHHhcCCCcEEEE
Q 017726 134 TAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLV 174 (367)
Q Consensus 134 ~~~~~~lv~~~~~~n~tG~~~~~~~i~~~~~~~~~~~~vi~ 174 (367)
......+++-+ +|....++...++++. .|.++++
T Consensus 94 ~g~g~Dvvid~-----~G~~~~~~~a~~~~~~--gG~iv~~ 127 (171)
T d1pl8a2 94 LGCKPEVTIEC-----TGAEASIQAGIYATRS--GGTLVLV 127 (171)
T ss_dssp HTSCCSEEEEC-----SCCHHHHHHHHHHSCT--TCEEEEC
T ss_pred CCCCceEEEec-----cCCchhHHHHHHHhcC--CCEEEEE
Confidence 11234555443 3544456666777766 5655554
|