Citrus Sinensis ID: 017792
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 366 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZUP2 | 430 | DNA repair protein recA h | yes | no | 0.983 | 0.837 | 0.772 | 1e-158 | |
| Q31F89 | 347 | Protein RecA OS=Thiomicro | yes | no | 0.912 | 0.962 | 0.563 | 1e-110 | |
| Q83CQ4 | 343 | Protein RecA OS=Coxiella | yes | no | 0.934 | 0.997 | 0.557 | 1e-108 | |
| B9JFS7 | 361 | Protein RecA OS=Agrobacte | yes | no | 0.934 | 0.947 | 0.546 | 1e-107 | |
| Q11IW6 | 360 | Protein RecA OS=Mesorhizo | yes | no | 0.877 | 0.891 | 0.589 | 1e-107 | |
| Q5ZUJ7 | 348 | Protein RecA OS=Legionell | yes | no | 0.882 | 0.928 | 0.579 | 1e-107 | |
| A5ICV8 | 348 | Protein RecA OS=Legionell | yes | no | 0.882 | 0.928 | 0.579 | 1e-107 | |
| Q5X4B5 | 348 | Protein RecA OS=Legionell | yes | no | 0.882 | 0.928 | 0.579 | 1e-107 | |
| Q5WVQ0 | 348 | Protein RecA OS=Legionell | yes | no | 0.882 | 0.928 | 0.579 | 1e-107 | |
| Q2RQH9 | 366 | Protein RecA OS=Rhodospir | yes | no | 0.857 | 0.857 | 0.589 | 1e-107 |
| >sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana GN=At2g19490 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 557 bits (1436), Expect = e-158, Method: Compositional matrix adjust.
Identities = 279/361 (77%), Positives = 323/361 (89%), Gaps = 1/361 (0%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
MSKK++ALQQALDQITSSFGKGSIM+LGR+V+PR+VPV STGSFALD+ALG GGLPKGRV
Sbjct: 55 MSKKEIALQQALDQITSSFGKGSIMYLGRAVSPRNVPVFSTGSFALDVALGVGGLPKGRV 114
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120
VEIYGPEASGKTTLALHVIAEAQ+QGG CVF+DAEHALD SLA+ IGV TENLLL+QPDC
Sbjct: 115 VEIYGPEASGKTTLALHVIAEAQKQGGTCVFVDAEHALDSSLAKAIGVNTENLLLSQPDC 174
Query: 121 GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180
GEQALSLVDTLIRSGSVDV+VVDSVAALVPKGEL+GEMGDAHMAMQARLMSQALRKLSHS
Sbjct: 175 GEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELEGEMGDAHMAMQARLMSQALRKLSHS 234
Query: 181 LSLSQTILIFINQVRAKLSTF-GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETI 239
LSLSQT+LIFINQVR+KLSTF GFGGPTEVTCGGNALKFYAS+RLNIKRIGL+KKGEET
Sbjct: 235 LSLSQTLLIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASMRLNIKRIGLIKKGEETT 294
Query: 240 GSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF 299
GSQ++VKIVKNKLAPPF+TAQFELEFGKGI + +EIIDL++KHKF +K G + N +N+
Sbjct: 295 GSQVSVKIVKNKLAPPFRTAQFELEFGKGICKITEIIDLSIKHKFIAKNGTFYNLNGKNY 354
Query: 300 RGKEAFKQFLVENESVREELVIKLREKLVVDHKEPQTAVTDEDSTEETVSTISPDSTDEE 359
GKEA K+FL +NES +EEL+ KL++KL+ D + ++ + + +SPD+TD+E
Sbjct: 355 HGKEALKRFLKQNESDQEELMKKLQDKLIADEAADKETESESEEEDSLRVVVSPDNTDDE 414
Query: 360 A 360
+
Sbjct: 415 S 415
|
Involved in recombination ability and DNA strand transfer activity. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q31F89|RECA_THICR Protein RecA OS=Thiomicrospira crunogena (strain XCL-2) GN=recA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 397 bits (1019), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/339 (56%), Positives = 254/339 (74%), Gaps = 5/339 (1%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
K AL+ AL QI FGKGSIM +G R + VSTGS LD+ALG GGLP+GRVVEI
Sbjct: 5 KKKALEAALGQIEKQFGKGSIMRMGDKGAIRDIDSVSTGSLGLDVALGIGGLPRGRVVEI 64
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTTL LH IAE Q+ GG F+DAEHALDP AE +GV +NLL++QPD GEQ
Sbjct: 65 YGPESSGKTTLTLHAIAEMQKMGGTAAFVDAEHALDPIYAEKLGVDIDNLLVSQPDTGEQ 124
Query: 124 ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D+L+RSG+VD+V+VDSVAAL PK E++G+MGD+HM +QARLMSQALRKL+ ++
Sbjct: 125 ALEITDSLVRSGAVDIVIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKR 184
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
+ T++IFINQ+R K+ FG P E T GGNALKFY+SVRL+I+RIG +KKG+E +G++
Sbjct: 185 TNTLVIFINQIRMKIGVM-FGNP-ETTTGGNALKFYSSVRLDIRRIGAIKKGDEILGNET 242
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGK 302
VK+VKNK++PPFK +FE+ +G+GISRE E+IDL +K K KAGA ++Y + +GK
Sbjct: 243 RVKVVKNKVSPPFKQVEFEILYGQGISREGEVIDLGVKEKLIEKAGAWYSYQGQKIGQGK 302
Query: 303 EAFKQFLVENESVREELVIKLREKLVVDHKEPQTAVTDE 341
+ +QFL +N + E L ++++E+L+ P+ TDE
Sbjct: 303 DNVRQFLKDNPDIYETLQVQIKERLMPKPNAPKA--TDE 339
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Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage. Thiomicrospira crunogena (strain XCL-2) (taxid: 317025) |
| >sp|Q83CQ4|RECA_COXBU Protein RecA OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=recA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 392 bits (1008), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/346 (55%), Positives = 256/346 (73%), Gaps = 4/346 (1%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
M + AL AL QI FGKGS+M LG + V+STGS LDIALG GGLP+GR+
Sbjct: 1 MDNRSNALNAALSQIERQFGKGSVMRLGDPGLIPDIDVISTGSLGLDIALGVGGLPRGRI 60
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120
+EIYGPEASGKTTLAL IA QR GG F+DAEHALD A +GVK E+LL++QPD
Sbjct: 61 IEIYGPEASGKTTLALQTIASCQRMGGTAAFVDAEHALDAIYAGKLGVKVEDLLVSQPDT 120
Query: 121 GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180
GEQAL + D L+RSG+VD++V+DSVAAL PK E++G+MGD+HM +QARLMSQALRKL+ +
Sbjct: 121 GEQALEITDMLVRSGAVDLIVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTAN 180
Query: 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIG 240
+ S T++IFINQ+R K+ FG P E T GGNALKFY+SVRL+I+RIG +KKGEE +G
Sbjct: 181 IKKSNTLVIFINQIRMKIGVM-FGNP-ETTTGGNALKFYSSVRLDIRRIGAIKKGEEILG 238
Query: 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYN-DRNF 299
S+ VK+VKNK+APPF+ +F++ +G GISRESE+IDL +K++ KAGA ++YN +R
Sbjct: 239 SETRVKVVKNKVAPPFRQVEFDILYGLGISRESELIDLGVKNELVEKAGAWYSYNGERIG 298
Query: 300 RGKEAFKQFLVENESVREELVIKLREKLVVDHKEPQTAVTDEDSTE 345
+GKE +QF +EN + E+ +LREKL + H++ + + ++ E
Sbjct: 299 QGKENVRQFFLENPKIAGEIETRLREKL-LPHRQGEKIAEEVNAAE 343
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Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage. Coxiella burnetii (strain RSA 493 / Nine Mile phase I) (taxid: 227377) |
| >sp|B9JFS7|RECA_AGRRK Protein RecA OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=recA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 388 bits (997), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/362 (54%), Positives = 257/362 (70%), Gaps = 20/362 (5%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
K AL+ AL QI SFGKGSIM LG + + VSTGS +LDIALG GGLPKGR+VEI
Sbjct: 16 KSKALEAALSQIERSFGKGSIMKLGSNENVVEIETVSTGSLSLDIALGIGGLPKGRIVEI 75
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTTLAL IAEAQ++GG C F+DAEHALDP A +GV +NLL++QPD GEQ
Sbjct: 76 YGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQ 135
Query: 124 ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + DTL+RSG++DV+VVDSVAAL P+ E++GEMGD+ +QARLMSQALRKL+ S+S
Sbjct: 136 ALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISK 195
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T++IFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK+ EE +G+Q
Sbjct: 196 SNTMVIFINQIRMKIGVM-FGSP-ETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQT 253
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGK 302
VK+VKNK+APPFK +F++ +G+G+S+ E++DL +K K+GA F+YN + +G+
Sbjct: 254 RVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGR 313
Query: 303 EAFKQFLVENESVREELVIKLREK--LVVDHKEPQTAVTDEDSTEETVSTISPDSTDEEA 360
E K FL +N + E+ + LR+ L+ D + PD+ D EA
Sbjct: 314 ENAKLFLRDNPDLAREIELSLRQNAGLIADR---------------FLQNGGPDADDGEA 358
Query: 361 AA 362
AA
Sbjct: 359 AA 360
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Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage. Agrobacterium radiobacter (strain K84 / ATCC BAA-868) (taxid: 311403) |
| >sp|Q11IW6|RECA_MESSB Protein RecA OS=Mesorhizobium sp. (strain BNC1) GN=recA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 388 bits (996), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/324 (58%), Positives = 244/324 (75%), Gaps = 3/324 (0%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
K AL AL QI +FGKGSIM LG + + +STGS LDIALG GGLP+GR++EI
Sbjct: 16 KSKALDAALSQIERAFGKGSIMRLGANDKVVEIETISTGSLGLDIALGVGGLPRGRIIEI 75
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTTLALH +AEAQ++GG C FIDAEHALDP A +GV ENLL++QPD GEQ
Sbjct: 76 YGPESSGKTTLALHTVAEAQKKGGICGFIDAEHALDPVYARKLGVDLENLLISQPDTGEQ 135
Query: 124 ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + DTL+RSG+VDV+VVDSVAAL P+ E++GEMG++ MQARLMSQALRKL+ S+S
Sbjct: 136 ALEICDTLVRSGAVDVIVVDSVAALTPRAEIEGEMGESLPGMQARLMSQALRKLTASISR 195
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T++IFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK EET+G+Q
Sbjct: 196 SNTMVIFINQIRMKIGVM-FGSP-ETTTGGNALKFYASVRLDIRRIGSVKDREETVGNQT 253
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGK 302
VK+VKNK+APPFK +F++ +G+G+S+ E++DL +K KAGA F+YN + +G+
Sbjct: 254 RVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGVVEKAGAWFSYNSQRLGQGR 313
Query: 303 EAFKQFLVENESVREELVIKLREK 326
E K FL +N V E+ + LR+
Sbjct: 314 ENAKLFLRDNPEVAREIELALRQN 337
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Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage. Mesorhizobium sp. (strain BNC1) (taxid: 266779) |
| >sp|Q5ZUJ7|RECA_LEGPH Protein RecA OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=recA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 388 bits (996), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/326 (57%), Positives = 243/326 (74%), Gaps = 3/326 (0%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
K AL AL QI FGKGS+M +G S R + +STGS LDIALG GGLPKGR+VEI
Sbjct: 5 KQKALSAALSQIERQFGKGSVMRMGDSTVSRDIEAISTGSLGLDIALGIGGLPKGRIVEI 64
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTTL L VIAE Q+ GG FIDAEHALDPS A+ +GVK + LL++QPD GEQ
Sbjct: 65 YGPESSGKTTLTLQVIAECQKMGGTAAFIDAEHALDPSYAQKLGVKVDELLVSQPDTGEQ 124
Query: 124 ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D L+RS +VDVV++DSVAAL PK E++GEMGD+H+ +QARLMSQALRKL+ ++
Sbjct: 125 ALEITDMLVRSAAVDVVIIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKR 184
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T++IFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG +KKGEE +GS+
Sbjct: 185 SNTLVIFINQIRMKIGVM-FGSP-ETTTGGNALKFYASVRLDIRRIGSIKKGEEILGSET 242
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGK 302
VK+VKNK+APPFK +F++ + +GISRESEII+L ++ K+GA ++Y +GK
Sbjct: 243 RVKVVKNKVAPPFKMTEFDILYNEGISRESEIINLGVQLNLIEKSGAWYSYKQEKIGQGK 302
Query: 303 EAFKQFLVENESVREELVIKLREKLV 328
E + +L EN V EL ++R +L+
Sbjct: 303 ENVRLYLKENPQVAAELEQQIRTELL 328
|
Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage. Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) (taxid: 272624) |
| >sp|A5ICV8|RECA_LEGPC Protein RecA OS=Legionella pneumophila (strain Corby) GN=recA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 388 bits (996), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/326 (57%), Positives = 243/326 (74%), Gaps = 3/326 (0%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
K AL AL QI FGKGS+M +G S R + +STGS LDIALG GGLPKGR+VEI
Sbjct: 5 KQKALSAALSQIERQFGKGSVMRMGDSTVSRDIEAISTGSLGLDIALGIGGLPKGRIVEI 64
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTTL L VIAE Q+ GG FIDAEHALDPS A+ +GVK + LL++QPD GEQ
Sbjct: 65 YGPESSGKTTLTLQVIAECQKMGGTAAFIDAEHALDPSYAQKLGVKVDELLVSQPDTGEQ 124
Query: 124 ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D L+RS +VDVV++DSVAAL PK E++GEMGD+H+ +QARLMSQALRKL+ ++
Sbjct: 125 ALEITDMLVRSAAVDVVIIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKR 184
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T++IFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG +KKGEE +GS+
Sbjct: 185 SNTLVIFINQIRMKIGVM-FGSP-ETTTGGNALKFYASVRLDIRRIGSIKKGEEILGSET 242
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGK 302
VK+VKNK+APPFK +F++ + +GISRESEII+L ++ K+GA ++Y +GK
Sbjct: 243 RVKVVKNKVAPPFKMTEFDILYNEGISRESEIINLGVQLNLIEKSGAWYSYKQEKIGQGK 302
Query: 303 EAFKQFLVENESVREELVIKLREKLV 328
E + +L EN V EL ++R +L+
Sbjct: 303 ENVRLYLKENPQVAAELEQQIRTELL 328
|
Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage. Legionella pneumophila (strain Corby) (taxid: 400673) |
| >sp|Q5X4B5|RECA_LEGPA Protein RecA OS=Legionella pneumophila (strain Paris) GN=recA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 388 bits (996), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/326 (57%), Positives = 243/326 (74%), Gaps = 3/326 (0%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
K AL AL QI FGKGS+M +G S R + +STGS LDIALG GGLPKGR+VEI
Sbjct: 5 KQKALSAALSQIERQFGKGSVMRMGDSTVSRDIEAISTGSLGLDIALGIGGLPKGRIVEI 64
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTTL L VIAE Q+ GG FIDAEHALDPS A+ +GVK + LL++QPD GEQ
Sbjct: 65 YGPESSGKTTLTLQVIAECQKMGGTAAFIDAEHALDPSYAQKLGVKVDELLVSQPDTGEQ 124
Query: 124 ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D L+RS +VDVV++DSVAAL PK E++GEMGD+H+ +QARLMSQALRKL+ ++
Sbjct: 125 ALEITDMLVRSAAVDVVIIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKR 184
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T++IFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG +KKGEE +GS+
Sbjct: 185 SNTLVIFINQIRMKIGVM-FGSP-ETTTGGNALKFYASVRLDIRRIGSIKKGEEILGSET 242
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGK 302
VK+VKNK+APPFK +F++ + +GISRESEII+L ++ K+GA ++Y +GK
Sbjct: 243 RVKVVKNKVAPPFKMTEFDILYNEGISRESEIINLGVQLNLIEKSGAWYSYKQEKIGQGK 302
Query: 303 EAFKQFLVENESVREELVIKLREKLV 328
E + +L EN V EL ++R +L+
Sbjct: 303 ENVRLYLKENPQVAAELEQQIRTELL 328
|
Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage. Legionella pneumophila (strain Paris) (taxid: 297246) |
| >sp|Q5WVQ0|RECA_LEGPL Protein RecA OS=Legionella pneumophila (strain Lens) GN=recA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/326 (57%), Positives = 243/326 (74%), Gaps = 3/326 (0%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
K AL AL QI FGKGS+M +G S R + +STGS LDIALG GGLPKGR+VEI
Sbjct: 5 KQKALSAALSQIERQFGKGSVMRMGDSTVSRDIEAISTGSLGLDIALGIGGLPKGRIVEI 64
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTTL L VIAE Q+ GG FIDAEHALDPS A+ +GVK + LL++QPD GEQ
Sbjct: 65 YGPESSGKTTLTLQVIAECQKMGGTAAFIDAEHALDPSYAQKLGVKVDELLVSQPDTGEQ 124
Query: 124 ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D L+RS +VDVV++DSVAAL PK E++GEMGD+H+ +QARLMSQALRKL+ ++
Sbjct: 125 ALEITDMLVRSAAVDVVIIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKR 184
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T++IFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG +KKGEE +GS+
Sbjct: 185 SNTLVIFINQIRMKIGVM-FGSP-ETTTGGNALKFYASVRLDIRRIGSIKKGEEILGSET 242
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGK 302
VK+VKNK+APPFK +F++ + +GISRESEII+L ++ K+GA ++Y +GK
Sbjct: 243 RVKVVKNKVAPPFKMTEFDILYNEGISRESEIINLGVQLNLIEKSGAWYSYKQEKIGQGK 302
Query: 303 EAFKQFLVENESVREELVIKLREKLV 328
E + +L EN V EL ++R +L+
Sbjct: 303 ENVRLYLKENPQVAAELEQQIRTELL 328
|
Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage. Legionella pneumophila (strain Lens) (taxid: 297245) |
| >sp|Q2RQH9|RECA_RHORT Protein RecA OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=recA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/317 (58%), Positives = 247/317 (77%), Gaps = 3/317 (0%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
K AL+ A+ QI +FGKGSIM LG+ + + +STGS LDIALG GGLP+GR+VEI
Sbjct: 16 KQKALEAAVGQIERAFGKGSIMKLGQRGSVVDIESISTGSLGLDIALGIGGLPRGRIVEI 75
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTTLALHV+AEAQ++GG C F+DAEHA DP A +GV ++LL++QPD GEQ
Sbjct: 76 YGPESSGKTTLALHVVAEAQKKGGQCAFVDAEHAFDPLYARKLGVSLDDLLVSQPDTGEQ 135
Query: 124 ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + DTL+RSG++DV+V+DSVAALVPK EL+G+MGD+H+ +QARLMSQALRKL+ ++S
Sbjct: 136 ALEIADTLVRSGAIDVLVIDSVAALVPKAELEGDMGDSHVGLQARLMSQALRKLTGTVSR 195
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T++IFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK EE +G+Q
Sbjct: 196 SNTLIIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKDKEEVVGNQT 253
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYND-RNFRGK 302
VK+VKNK+APPFK +F++ +G+GIS+ E++DL +K K+GA F+YN R +G+
Sbjct: 254 RVKVVKNKVAPPFKVVEFDIMYGEGISKLGEMLDLGVKANIIEKSGAWFSYNSTRIGQGR 313
Query: 303 EAFKQFLVENESVREEL 319
E KQFL +N ++ EE+
Sbjct: 314 ENAKQFLRDNPAMAEEI 330
|
Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage. Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 366 | ||||||
| 359484305 | 421 | PREDICTED: DNA repair protein recA homol | 0.983 | 0.855 | 0.823 | 1e-164 | |
| 357449857 | 424 | RecA [Medicago truncatula] gi|355484253| | 0.983 | 0.849 | 0.768 | 1e-162 | |
| 356561937 | 459 | PREDICTED: DNA repair protein recA homol | 1.0 | 0.797 | 0.786 | 1e-161 | |
| 224087995 | 418 | predicted protein [Populus trichocarpa] | 0.983 | 0.861 | 0.798 | 1e-159 | |
| 255546127 | 380 | DNA repair protein reca, putative [Ricin | 0.953 | 0.918 | 0.808 | 1e-158 | |
| 356532732 | 432 | PREDICTED: DNA repair protein recA homol | 0.893 | 0.756 | 0.817 | 1e-158 | |
| 224122482 | 357 | predicted protein [Populus trichocarpa] | 0.972 | 0.997 | 0.799 | 1e-157 | |
| 42569151 | 430 | DNA repair protein recA-like 3 [Arabidop | 0.983 | 0.837 | 0.772 | 1e-156 | |
| 4191779 | 376 | putative recA protein [Arabidopsis thali | 0.983 | 0.957 | 0.772 | 1e-156 | |
| 356558365 | 423 | PREDICTED: DNA repair protein recA homol | 0.893 | 0.773 | 0.802 | 1e-156 |
| >gi|359484305|ref|XP_002279464.2| PREDICTED: DNA repair protein recA homolog 3, mitochondrial-like [Vitis vinifera] gi|297738654|emb|CBI27899.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust.
Identities = 303/368 (82%), Positives = 329/368 (89%), Gaps = 8/368 (2%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
+SKK+LAL+QALDQIT+SFGKGSIMWLGRSV+ +HVPVVSTGSFALDI LG GGLPKGRV
Sbjct: 55 LSKKELALRQALDQITTSFGKGSIMWLGRSVSSKHVPVVSTGSFALDIVLGIGGLPKGRV 114
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120
VEIYGPEASGKTTLALHVIAEAQ+QGGYCVF+DAEHALDP+LAE IGV T+NLLL+QPDC
Sbjct: 115 VEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDPALAEAIGVNTQNLLLSQPDC 174
Query: 121 GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180
GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS
Sbjct: 175 GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 234
Query: 181 LSLSQTILIFINQVRAKLSTF-GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETI 239
LSLSQTILIFINQVRAKLSTF GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETI
Sbjct: 235 LSLSQTILIFINQVRAKLSTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETI 294
Query: 240 GSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASK-AGAMFTYNDRN 298
GSQ+ VK+VKNK APPFKTAQFELEFGKGI RESEI++L KHKF K GAM++YN ++
Sbjct: 295 GSQVLVKVVKNKHAPPFKTAQFELEFGKGICRESEIVELGCKHKFIIKGGGAMYSYNGQS 354
Query: 299 FRGKEAFKQFLVENESVREELVIKLREKLVVD---HKEPQTAVTDEDSTEETVSTISPDS 355
FRGK+A KQFL +NES REEL+ KLREKLV + KE + DED E T+ PD+
Sbjct: 355 FRGKDAIKQFLSQNESEREELMRKLREKLVGETNKEKELEAEAVDEDIAE---GTVPPDT 411
Query: 356 TDEEAAAV 363
TDEE AV
Sbjct: 412 TDEEVTAV 419
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357449857|ref|XP_003595205.1| RecA [Medicago truncatula] gi|355484253|gb|AES65456.1| RecA [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 285/371 (76%), Positives = 324/371 (87%), Gaps = 11/371 (2%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
MSKKDLALQQA+DQITS+FGKGSIMWLGR+V+P++VPVVSTGSFALDIALG GLPKGRV
Sbjct: 60 MSKKDLALQQAMDQITSTFGKGSIMWLGRTVSPKNVPVVSTGSFALDIALGIFGLPKGRV 119
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120
VEI+GPEASGKTTLALHVIAEAQ+QGGYC FIDAEHALD SLAE+IGV TENLLL+QPDC
Sbjct: 120 VEIFGPEASGKTTLALHVIAEAQKQGGYCAFIDAEHALDKSLAESIGVNTENLLLSQPDC 179
Query: 121 GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180
GEQALSLVDTLIRSGS+DV+VVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL HS
Sbjct: 180 GEQALSLVDTLIRSGSIDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHS 239
Query: 181 LSLSQTILIFINQVRAKLSTF-GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETI 239
LSLSQ ILIFINQVR+K+STF GFGGPTEVTCGGNALKFY+SVRLNIKR+G VKKGEET+
Sbjct: 240 LSLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRVGFVKKGEETV 299
Query: 240 GSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF 299
GSQ+ VK+VKNK APPFKTAQFELEFGKGI RE+EII+L++KHKF K+G+ + YN +N+
Sbjct: 300 GSQVLVKVVKNKHAPPFKTAQFELEFGKGICREAEIIELSIKHKFIKKSGSFYEYNGKNY 359
Query: 300 RGKEAFKQFLVENESVREELVIKLREKLVVDHKEPQTAVTDE----DSTEETVSTISPDS 355
GK+A K L+ + + ++L KLREKL+ + E +T + D TEE +SPDS
Sbjct: 360 HGKDALKSHLINGDGL-QDLTTKLREKLL--NAETETVSESQEMVGDVTEE---MLSPDS 413
Query: 356 TDEEAAAVVEA 366
TDEE A V EA
Sbjct: 414 TDEETAVVAEA 424
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356561937|ref|XP_003549233.1| PREDICTED: DNA repair protein recA homolog 3, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 299/380 (78%), Positives = 332/380 (87%), Gaps = 14/380 (3%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
MSKK+LALQQALDQITS+FGKGSIMWLGRSV+P++VPVVSTGSFALD+ALG GGLPKGRV
Sbjct: 80 MSKKELALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDVALGIGGLPKGRV 139
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120
VEIYGPEASGKTTLALHVIAEAQ+QGGYCVF+DAEHALD +LAE+IGV T NLLL+QPDC
Sbjct: 140 VEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDKTLAESIGVNTTNLLLSQPDC 199
Query: 121 GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180
GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSH+
Sbjct: 200 GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHA 259
Query: 181 LSLSQTILIFINQVRAKLSTF-GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETI 239
LSLSQTILIFINQVR+K+STF GF GPTEVTCGGNALKFYASVRLNIKRIG VKKGEE +
Sbjct: 260 LSLSQTILIFINQVRSKISTFGGFSGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEEIL 319
Query: 240 GSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF 299
GSQ+ VK+VKNKLAPPFKTA+FEL+FGKGI +E+EIIDL++ HK SKAGAMF YN+ +F
Sbjct: 320 GSQVLVKVVKNKLAPPFKTAEFELQFGKGICKETEIIDLSVNHKLISKAGAMFYYNEHSF 379
Query: 300 RGKEAFKQFLVENESVREELVIKLREKLVVDHKEPQT-------AVTDE----DSTEETV 348
RGK+A K FL EN S EEL +KLREKL+ E VT+E DST + V
Sbjct: 380 RGKDALKNFLAENRSALEELEMKLREKLLNAETEKMQESDVINGYVTEEIATVDSTNDNV 439
Query: 349 S--TISPDSTDEEAAAVVEA 366
+ + DSTDEEAAA+VEA
Sbjct: 440 TEKIATVDSTDEEAAAIVEA 459
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224087995|ref|XP_002308284.1| predicted protein [Populus trichocarpa] gi|222854260|gb|EEE91807.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust.
Identities = 290/363 (79%), Positives = 319/363 (87%), Gaps = 3/363 (0%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
MSKK+LALQQALDQITS FGKG+IMW GRS P++VPVVSTGSFALDIALG GG PKGRV
Sbjct: 55 MSKKELALQQALDQITSQFGKGAIMWFGRSEAPKNVPVVSTGSFALDIALGCGGFPKGRV 114
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120
VEI+GPEASGKTTLALHVIAEAQ+QGGYCVF+DAEHALD SLA+ IGV TENLLL+QPDC
Sbjct: 115 VEIFGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDSSLAKAIGVNTENLLLSQPDC 174
Query: 121 GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180
GEQALSLVDTLIRSGSVDVVVVDSVAALVPK ELDGEMGDAHMAMQARLMSQALRKLSHS
Sbjct: 175 GEQALSLVDTLIRSGSVDVVVVDSVAALVPKSELDGEMGDAHMAMQARLMSQALRKLSHS 234
Query: 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIG 240
LS SQTIL+FINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNI+R+G +KKGEET G
Sbjct: 235 LSQSQTILVFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIRRVGFIKKGEETTG 294
Query: 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNFR 300
+Q+ VKIVKNKLAPPFKT QFELEFGKGISRESEII+LALKHK K+G+ + N + +
Sbjct: 295 TQVQVKIVKNKLAPPFKTVQFELEFGKGISRESEIIELALKHKLIKKSGSFYDCNGKKYH 354
Query: 301 GKEAFKQFLVENESVREELVIKLREKLVVDHKEPQTAVTDEDST-EETVSTISPDSTDEE 359
GKEAFK+FL N+ V+EEL++KLREKL+ E + DE + E T ISPDSTDEE
Sbjct: 355 GKEAFKEFLAHNDDVQEELMMKLREKLL--EGETGQELGDESTDGEPTQEIISPDSTDEE 412
Query: 360 AAA 362
AA
Sbjct: 413 VAA 415
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546127|ref|XP_002514123.1| DNA repair protein reca, putative [Ricinus communis] gi|223546579|gb|EEF48077.1| DNA repair protein reca, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust.
Identities = 287/355 (80%), Positives = 318/355 (89%), Gaps = 6/355 (1%)
Query: 15 ITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTL 74
ITS++GKG+IMW GRS+ P+ VPVVSTGSFALD+ALGTGGLPKGRVVEIYGPEASGKTTL
Sbjct: 29 ITSAYGKGAIMWFGRSIAPKDVPVVSTGSFALDVALGTGGLPKGRVVEIYGPEASGKTTL 88
Query: 75 ALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134
ALHVIAEAQ+QGGYCVF+DAEHALD SLA++IGV TENLLL+QPDCGEQALSLVDTLIRS
Sbjct: 89 ALHVIAEAQKQGGYCVFVDAEHALDSSLAQSIGVNTENLLLSQPDCGEQALSLVDTLIRS 148
Query: 135 GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 194
GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS S+T+LIFINQV
Sbjct: 149 GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSQSETVLIFINQV 208
Query: 195 RAKLSTF-GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLA 253
RAKLSTF GFGGP EVTCGGNALKFYASVRLNI+R+GL+KKGEETIGSQ+ VKIVKNKLA
Sbjct: 209 RAKLSTFGGFGGPQEVTCGGNALKFYASVRLNIRRVGLIKKGEETIGSQVQVKIVKNKLA 268
Query: 254 PPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNFRGKEAFKQFLVENE 313
PPFKT QFELEFGKGI R+SEI++L +KHKF KAG+ + YN +NF GKEAF++FL EN+
Sbjct: 269 PPFKTVQFELEFGKGICRDSEIMELGVKHKFLGKAGSFYNYNGQNFHGKEAFRKFLAEND 328
Query: 314 SVREELVIKLREKLVVDH--KEPQTAVTDEDSTEETVSTISPDSTDEEAAAVVEA 366
+ REELV+KLREKL+ H K + VTDE EE TISPDSTDEEA VEA
Sbjct: 329 NAREELVMKLREKLLNAHIDKGQGSEVTDEALVEE---TISPDSTDEEAVTAVEA 380
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356532732|ref|XP_003534925.1| PREDICTED: DNA repair protein recA homolog 3, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust.
Identities = 269/329 (81%), Positives = 304/329 (92%), Gaps = 2/329 (0%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
+SKKDLALQQA+DQITS++GKGSIMWLGRSV P++VPVVSTGSFALDIALG GGLPKGRV
Sbjct: 60 LSKKDLALQQAIDQITSAYGKGSIMWLGRSVAPKNVPVVSTGSFALDIALGVGGLPKGRV 119
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120
VEI+GPEASGKTTLALHVIAEAQ+QGGYC F+DAEHALD +LAE+IGV T+NLLL+QPDC
Sbjct: 120 VEIFGPEASGKTTLALHVIAEAQKQGGYCAFVDAEHALDKTLAESIGVDTKNLLLSQPDC 179
Query: 121 GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180
GEQALSLVDTLIRSGSVD +VVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL HS
Sbjct: 180 GEQALSLVDTLIRSGSVDAIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHS 239
Query: 181 LSLSQTILIFINQVRAKLSTF-GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETI 239
LSLSQ ILIFINQVR+K+STF G+GGPTEVTCGGNALKFYASVRLNIKRIG VKKGEET+
Sbjct: 240 LSLSQCILIFINQVRSKISTFGGYGGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEETL 299
Query: 240 GSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF 299
GSQ+ VK+VKNK APPFKTAQFE+EFGKGISRE+EII+L++K+K K+G+ F YN RNF
Sbjct: 300 GSQVLVKVVKNKHAPPFKTAQFEIEFGKGISREAEIIELSVKYKIIKKSGSFFEYNGRNF 359
Query: 300 RGKEAFKQFLVENESVREELVIKLREKLV 328
GK+A K+FL E++ V +EL KLREK++
Sbjct: 360 HGKDALKRFLAESDGV-QELATKLREKIL 387
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122482|ref|XP_002330492.1| predicted protein [Populus trichocarpa] gi|222872426|gb|EEF09557.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust.
Identities = 287/359 (79%), Positives = 314/359 (87%), Gaps = 3/359 (0%)
Query: 2 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVV 61
SKKDLALQQALDQITS FGKGSIMW GRS P++VPVVSTGSFALDIALG GG PKGRVV
Sbjct: 1 SKKDLALQQALDQITSQFGKGSIMWFGRSEAPKNVPVVSTGSFALDIALGCGGFPKGRVV 60
Query: 62 EIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCG 121
EI+GPEASGKTTLALHVIAEAQ+QGGYCVF+DAEHALD SLA+ IGV TENLLL+QPDCG
Sbjct: 61 EIFGPEASGKTTLALHVIAEAQKQGGYCVFMDAEHALDSSLAKAIGVNTENLLLSQPDCG 120
Query: 122 EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL 181
EQALSLVDTLIRSGSVDVVVVDSVAALVPK ELDGEMGDAHMAMQARLMSQALRKLSHSL
Sbjct: 121 EQALSLVDTLIRSGSVDVVVVDSVAALVPKSELDGEMGDAHMAMQARLMSQALRKLSHSL 180
Query: 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGS 241
S SQT+LIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNI+R+G +KKGEET G+
Sbjct: 181 SQSQTVLIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIRRVGFIKKGEETTGT 240
Query: 242 QIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNFRG 301
Q+ VKI KNKLAPPFKT QFELEFGKGISRESEII+LA+KHKF K GA + N R + G
Sbjct: 241 QVQVKIAKNKLAPPFKTVQFELEFGKGISRESEIIELAVKHKFIKKNGAFYDCNGRKYHG 300
Query: 302 KEAFKQFLVENESVREELVIKLREKLVVDHKEPQTAVTDEDST-EETVSTISPDSTDEE 359
KEA ++FL N+ V+EEL++KLREKL+ E + DE + E T +I PDSTDEE
Sbjct: 301 KEALREFLAHNDDVQEELMMKLREKLL--EAETDQELKDETTDGEPTQESIPPDSTDEE 357
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42569151|ref|NP_179539.2| DNA repair protein recA-like 3 [Arabidopsis thaliana] gi|209572665|sp|Q9ZUP2.2|RECA3_ARATH RecName: Full=DNA repair protein recA homolog 3, mitochondrial; AltName: Full=Recombinase A homolog 3; Flags: Precursor gi|119935859|gb|ABM06015.1| At2g19490 [Arabidopsis thaliana] gi|330251794|gb|AEC06888.1| DNA repair protein recA-like 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 279/361 (77%), Positives = 323/361 (89%), Gaps = 1/361 (0%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
MSKK++ALQQALDQITSSFGKGSIM+LGR+V+PR+VPV STGSFALD+ALG GGLPKGRV
Sbjct: 55 MSKKEIALQQALDQITSSFGKGSIMYLGRAVSPRNVPVFSTGSFALDVALGVGGLPKGRV 114
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120
VEIYGPEASGKTTLALHVIAEAQ+QGG CVF+DAEHALD SLA+ IGV TENLLL+QPDC
Sbjct: 115 VEIYGPEASGKTTLALHVIAEAQKQGGTCVFVDAEHALDSSLAKAIGVNTENLLLSQPDC 174
Query: 121 GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180
GEQALSLVDTLIRSGSVDV+VVDSVAALVPKGEL+GEMGDAHMAMQARLMSQALRKLSHS
Sbjct: 175 GEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELEGEMGDAHMAMQARLMSQALRKLSHS 234
Query: 181 LSLSQTILIFINQVRAKLSTF-GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETI 239
LSLSQT+LIFINQVR+KLSTF GFGGPTEVTCGGNALKFYAS+RLNIKRIGL+KKGEET
Sbjct: 235 LSLSQTLLIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASMRLNIKRIGLIKKGEETT 294
Query: 240 GSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF 299
GSQ++VKIVKNKLAPPF+TAQFELEFGKGI + +EIIDL++KHKF +K G + N +N+
Sbjct: 295 GSQVSVKIVKNKLAPPFRTAQFELEFGKGICKITEIIDLSIKHKFIAKNGTFYNLNGKNY 354
Query: 300 RGKEAFKQFLVENESVREELVIKLREKLVVDHKEPQTAVTDEDSTEETVSTISPDSTDEE 359
GKEA K+FL +NES +EEL+ KL++KL+ D + ++ + + +SPD+TD+E
Sbjct: 355 HGKEALKRFLKQNESDQEELMKKLQDKLIADEAADKETESESEEEDSLRVVVSPDNTDDE 414
Query: 360 A 360
+
Sbjct: 415 S 415
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4191779|gb|AAD10148.1| putative recA protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust.
Identities = 279/361 (77%), Positives = 323/361 (89%), Gaps = 1/361 (0%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
MSKK++ALQQALDQITSSFGKGSIM+LGR+V+PR+VPV STGSFALD+ALG GGLPKGRV
Sbjct: 1 MSKKEIALQQALDQITSSFGKGSIMYLGRAVSPRNVPVFSTGSFALDVALGVGGLPKGRV 60
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120
VEIYGPEASGKTTLALHVIAEAQ+QGG CVF+DAEHALD SLA+ IGV TENLLL+QPDC
Sbjct: 61 VEIYGPEASGKTTLALHVIAEAQKQGGTCVFVDAEHALDSSLAKAIGVNTENLLLSQPDC 120
Query: 121 GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180
GEQALSLVDTLIRSGSVDV+VVDSVAALVPKGEL+GEMGDAHMAMQARLMSQALRKLSHS
Sbjct: 121 GEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELEGEMGDAHMAMQARLMSQALRKLSHS 180
Query: 181 LSLSQTILIFINQVRAKLSTF-GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETI 239
LSLSQT+LIFINQVR+KLSTF GFGGPTEVTCGGNALKFYAS+RLNIKRIGL+KKGEET
Sbjct: 181 LSLSQTLLIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASMRLNIKRIGLIKKGEETT 240
Query: 240 GSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF 299
GSQ++VKIVKNKLAPPF+TAQFELEFGKGI + +EIIDL++KHKF +K G + N +N+
Sbjct: 241 GSQVSVKIVKNKLAPPFRTAQFELEFGKGICKITEIIDLSIKHKFIAKNGTFYNLNGKNY 300
Query: 300 RGKEAFKQFLVENESVREELVIKLREKLVVDHKEPQTAVTDEDSTEETVSTISPDSTDEE 359
GKEA K+FL +NES +EEL+ KL++KL+ D + ++ + + +SPD+TD+E
Sbjct: 301 HGKEALKRFLKQNESDQEELMKKLQDKLIADEAADKETESESEEEDSLRVVVSPDNTDDE 360
Query: 360 A 360
+
Sbjct: 361 S 361
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356558365|ref|XP_003547477.1| PREDICTED: DNA repair protein recA homolog 3, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust.
Identities = 264/329 (80%), Positives = 302/329 (91%), Gaps = 2/329 (0%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
MSKKD+ALQQA+DQITS++GKGSIMWLGRS+ P++VPVVSTGSFALDIALG GGLPKGRV
Sbjct: 53 MSKKDMALQQAIDQITSAYGKGSIMWLGRSMAPKNVPVVSTGSFALDIALGVGGLPKGRV 112
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120
VEI+GPEASGKTTLALH+IAEAQ+ GGYC F+DAEHALD +LAE+IGV T+NLLL+QPDC
Sbjct: 113 VEIFGPEASGKTTLALHMIAEAQKLGGYCAFVDAEHALDKTLAESIGVDTKNLLLSQPDC 172
Query: 121 GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180
GEQALSLVDTLIRSGSVD +VVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL HS
Sbjct: 173 GEQALSLVDTLIRSGSVDAIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHS 232
Query: 181 LSLSQTILIFINQVRAKLSTF-GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETI 239
LSLSQ IL+FINQVR+K+STF G+GGPTEVTCGGNALKFYASVRLNIKRIG VKKGEET+
Sbjct: 233 LSLSQCILVFINQVRSKISTFGGYGGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEETL 292
Query: 240 GSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF 299
GSQ+ VK+VKNK APPFKTAQFE+EFGKGISRE+EII+L++K+K K+G+ F YN RNF
Sbjct: 293 GSQVLVKVVKNKHAPPFKTAQFEIEFGKGISREAEIIELSVKYKIIKKSGSFFEYNGRNF 352
Query: 300 RGKEAFKQFLVENESVREELVIKLREKLV 328
GK+A K+FL E++ V +EL LREK++
Sbjct: 353 HGKDALKRFLAESDGV-QELATMLREKIL 380
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 366 | ||||||
| TAIR|locus:2050439 | 430 | RECA2 "A. thaliana recA homolo | 0.994 | 0.846 | 0.739 | 3.9e-140 | |
| TIGR_CMR|CBU_1054 | 343 | CBU_1054 "recA protein" [Coxie | 0.901 | 0.962 | 0.550 | 5.5e-93 | |
| TIGR_CMR|CHY_1166 | 343 | CHY_1166 "recA protein" [Carbo | 0.890 | 0.950 | 0.525 | 8.3e-90 | |
| TIGR_CMR|BA_3915 | 343 | BA_3915 "recA protein, group I | 0.879 | 0.938 | 0.527 | 5.3e-88 | |
| TIGR_CMR|NSE_0530 | 327 | NSE_0530 "recA protein" [Neori | 0.882 | 0.987 | 0.521 | 4.7e-87 | |
| TIGR_CMR|SO_3430 | 357 | SO_3430 "recA protein" [Shewan | 0.879 | 0.901 | 0.530 | 2.6e-86 | |
| UNIPROTKB|P45383 | 354 | recA "Protein RecA" [Vibrio ch | 0.879 | 0.909 | 0.533 | 5.4e-86 | |
| TIGR_CMR|VC_0543 | 354 | VC_0543 "recA protein" [Vibrio | 0.879 | 0.909 | 0.533 | 5.4e-86 | |
| UNIPROTKB|P0A5U4 | 790 | recA "Protein RecA" [Mycobacte | 0.669 | 0.310 | 0.552 | 5.7e-86 | |
| TIGR_CMR|GSU_0145 | 338 | GSU_0145 "recA protein" [Geoba | 0.871 | 0.943 | 0.527 | 6.9e-86 |
| TAIR|locus:2050439 RECA2 "A. thaliana recA homolog 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1371 (487.7 bits), Expect = 3.9e-140, P = 3.9e-140
Identities = 270/365 (73%), Positives = 310/365 (84%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
MSKK++ALQQALDQITSSFGKGSIM+LGR+V+PR+VPV STGSFALD+ALG GGLPKGRV
Sbjct: 55 MSKKEIALQQALDQITSSFGKGSIMYLGRAVSPRNVPVFSTGSFALDVALGVGGLPKGRV 114
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120
VEIYGPEASGKTTLALHVIAEAQ+QGG CVF+DAEHALD SLA+ IGV TENLLL+QPDC
Sbjct: 115 VEIYGPEASGKTTLALHVIAEAQKQGGTCVFVDAEHALDSSLAKAIGVNTENLLLSQPDC 174
Query: 121 GEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180
GEQALSLVDTLIRSG LVPKGEL+GEMGDAHMAMQARLMSQALRKLSHS
Sbjct: 175 GEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELEGEMGDAHMAMQARLMSQALRKLSHS 234
Query: 181 LSLSQTILIFINQVRAKLSTFG-FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETI 239
LSLSQT+LIFINQVR+KLSTFG FGGPTEVTCGGNALKFYAS+RLNIKRIGL+KKGEET
Sbjct: 235 LSLSQTLLIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASMRLNIKRIGLIKKGEETT 294
Query: 240 GSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF 299
GSQ++VKIVKNKLAPPF+TAQFELEFGKGI + +EIIDL++KHKF +K G + N +N+
Sbjct: 295 GSQVSVKIVKNKLAPPFRTAQFELEFGKGICKITEIIDLSIKHKFIAKNGTFYNLNGKNY 354
Query: 300 RGKEAFKQFLVENESVREELVIKLREKLVVDHKEPQTAXXXXXXXXXXXXXISPDSTDEE 359
GKEA K+FL +NES +EEL+ KL++KL+ D + +SPD+TD+E
Sbjct: 355 HGKEALKRFLKQNESDQEELMKKLQDKLIADEAADKETESESEEEDSLRVVVSPDNTDDE 414
Query: 360 AAAVV 364
+ A+V
Sbjct: 415 SPALV 419
|
|
| TIGR_CMR|CBU_1054 CBU_1054 "recA protein" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
Identities = 184/334 (55%), Positives = 239/334 (71%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
M + AL AL QI FGKGS+M LG + V+STGS LDIALG GGLP+GR+
Sbjct: 1 MDNRSNALNAALSQIERQFGKGSVMRLGDPGLIPDIDVISTGSLGLDIALGVGGLPRGRI 60
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120
+EIYGPEASGKTTLAL IA QR GG F+DAEHALD A +GVK E+LL++QPD
Sbjct: 61 IEIYGPEASGKTTLALQTIASCQRMGGTAAFVDAEHALDAIYAGKLGVKVEDLLVSQPDT 120
Query: 121 GEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180
GEQAL + D L+RSG L PK E++G+MGD+HM +QARLMSQALRKL+ +
Sbjct: 121 GEQALEITDMLVRSGAVDLIVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTAN 180
Query: 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIG 240
+ S T++IFINQ+R K+ FG P E T GGNALKFY+SVRL+I+RIG +KKGEE +G
Sbjct: 181 IKKSNTLVIFINQIRMKIGVM-FGNP-ETTTGGNALKFYSSVRLDIRRIGAIKKGEEILG 238
Query: 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYN-DRNF 299
S+ VK+VKNK+APPF+ +F++ +G GISRESE+IDL +K++ KAGA ++YN +R
Sbjct: 239 SETRVKVVKNKVAPPFRQVEFDILYGLGISRESELIDLGVKNELVEKAGAWYSYNGERIG 298
Query: 300 RGKEAFKQFLVENESVREELVIKLREKLVVDHKE 333
+GKE +QF +EN + E+ +LREKL+ H++
Sbjct: 299 QGKENVRQFFLENPKIAGEIETRLREKLL-PHRQ 331
|
|
| TIGR_CMR|CHY_1166 CHY_1166 "recA protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
Identities = 173/329 (52%), Positives = 241/329 (73%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
M+ K AL+ + QI FGKGSIM LG + V V+ TGS ALD+ALG GG+P+GRV
Sbjct: 1 MNDKLKALELTISQIEKQFGKGSIMRLGENTGKFQVEVIPTGSLALDLALGVGGVPRGRV 60
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120
VEI+GPE+SGKTT+ALH+IAEAQ+ GG FIDAEHALDP A+ +GV ENLL++QPD
Sbjct: 61 VEIFGPESSGKTTVALHIIAEAQKMGGIAAFIDAEHALDPVYAQKLGVDIENLLVSQPDT 120
Query: 121 GEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180
GEQAL + ++L+RSG LVP+ E++GEMGDAH+ +QARLMSQALRKL+ +
Sbjct: 121 GEQALEIAESLVRSGAIDVIVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGA 180
Query: 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIG 240
+S S+T+ IFINQ+R K+ FG P E T GG ALKFYAS+R+++++I ++K+G + IG
Sbjct: 181 ISKSKTVAIFINQMREKVGVM-FGNP-ETTPGGRALKFYASIRMDVRKIDVIKQGNDIIG 238
Query: 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF- 299
S+ VKIVKNK+APPFK A F++ +G+GIS+E ++D+A++ K K G+ ++YND
Sbjct: 239 SRTRVKIVKNKVAPPFKQADFDIMYGEGISKEGSLLDVAVELKIVQKVGSWYSYNDERLG 298
Query: 300 RGKEAFKQFLVENESVREELVIKLREKLV 328
+G+E K+FL +N + E+ K+RE+++
Sbjct: 299 QGRENAKEFLRQNPEIYREIEQKIREQVL 327
|
|
| TIGR_CMR|BA_3915 BA_3915 "recA protein, group I intron-containing" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
Identities = 172/326 (52%), Positives = 231/326 (70%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
MS + AL AL QI FGKGSIM LG R V VS+GS ALD+ALG GG P+GR+
Sbjct: 1 MSDRQAALDMALKQIEKQFGKGSIMKLGEQAE-RKVSTVSSGSLALDVALGVGGYPRGRI 59
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120
+EIYGPE+SGKTT++LH IAE QRQGG FIDAEHA+DP A+ +GV + LLL+QPD
Sbjct: 60 IEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDT 119
Query: 121 GEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180
GEQ L + + L+RSG LVPK E++G+MGD+H+ +QARLMSQALRKLS +
Sbjct: 120 GEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGA 179
Query: 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIG 240
++ S+TI IFINQ+R K+ FG P E T GG ALKFY++VRL ++R +K+G + +G
Sbjct: 180 INKSKTIAIFINQIREKVGVM-FGNP-ETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVG 237
Query: 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF- 299
++ VK+VKNK+APPF+ A+ ++ +G+GISRE EI+D+A + K+GA ++YN+
Sbjct: 238 NKTKVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLG 297
Query: 300 RGKEAFKQFLVENESVREELVIKLRE 325
+G+E KQFL EN +REE+ +RE
Sbjct: 298 QGRENSKQFLKENTDLREEIAFFIRE 323
|
|
| TIGR_CMR|NSE_0530 NSE_0530 "recA protein" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] | Back alignment and assigned GO terms |
|---|
Score = 870 (311.3 bits), Expect = 4.7e-87, P = 4.7e-87
Identities = 172/330 (52%), Positives = 238/330 (72%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
M+++D AL+ + QI FGKGSIM + P V +STGS LD ALG GG+PKGR+
Sbjct: 1 MNRED-ALKGVVVQIEKMFGKGSIMTFSQE--PASVECISTGSIGLDSALG-GGIPKGRI 56
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120
+EI+GPE+SGKTTL LH+IAEAQ+ GG C FIDAEHALDP A +GVK E LL++QPD
Sbjct: 57 IEIFGPESSGKTTLTLHIIAEAQKNGGTCAFIDAEHALDPVYARRLGVKIEELLISQPDT 116
Query: 121 GEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180
GEQAL +VD+LI+SG L PK E++GEMGD H+ +QARL+SQALRK++ S
Sbjct: 117 GEQALEIVDSLIKSGAVDVIVVDSVAALTPKAEIEGEMGDLHVGLQARLLSQALRKITAS 176
Query: 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIG 240
+S S +++FINQ+R K+ FG P E T GGNALKFY+SVR++I++IG +K E+ +G
Sbjct: 177 VSRSNCVVVFINQIRMKIGVM-FGSP-ETTTGGNALKFYSSVRIDIRKIGSIKDKEDVVG 234
Query: 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF- 299
+Q VK+VKNK+APPFK A+F++ + +GIS+ EII++ +++K KAG+ ++Y D
Sbjct: 235 NQTRVKVVKNKVAPPFKQAEFDIIYTEGISKLGEIIEIGVRNKIIEKAGSYYSYGDVKLG 294
Query: 300 RGKEAFKQFLVENESVREELVIKLREKLVV 329
+GKE KQFL EN+ + EL K+R+ +++
Sbjct: 295 QGKENVKQFLKENKELAAELERKVRDSMLL 324
|
|
| TIGR_CMR|SO_3430 SO_3430 "recA protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
Identities = 173/326 (53%), Positives = 228/326 (69%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
K+ AL L QI FGKGSIM LG + V +STGS +LD+ALG GGLP GR+VEI
Sbjct: 7 KEKALAAVLSQIEKQFGKGSIMKLGEDRS-MDVETISTGSLSLDVALGAGGLPMGRIVEI 65
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A+ +GV +NLL +QPD GEQ
Sbjct: 66 YGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQ 125
Query: 124 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D L RSG L PK E++GE+GD+HM + AR+MSQA+RKL+ +L
Sbjct: 126 ALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T+LIFINQ+R K+ FG P E T GGNALKFYASVRL+I+R G +K+G+E +G++
Sbjct: 186 SNTLLIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 243
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYN-DRNFRGK 302
VK+VKNK+A PFK A+F++ +G+GI+R E++DL + HK KAGA ++Y D+ +G+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGR 303
Query: 303 EAFKQFLVENESVREELVIKLREKLV 328
++L EN ++ E+ LRE L+
Sbjct: 304 ANAGKYLTENPAIAAEIDKTLRELLL 329
|
|
| UNIPROTKB|P45383 recA "Protein RecA" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
Identities = 174/326 (53%), Positives = 227/326 (69%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+VEI
Sbjct: 5 KQKALAAALGQIEKQFGKGSIMRLGDN-RAMDVETISTGSLSLDIALGAGGLPMGRIVEI 63
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
+GPE+SGKTTL L +IA AQR+G C FIDAEHALDP A+ +GV + LL++QPD GEQ
Sbjct: 64 FGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQ 123
Query: 124 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D L RSG L PK E++GEMGD+HM +QAR++SQA+RKL+ +L
Sbjct: 124 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQ 183
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S + IFINQ+R K+ FG P E T GGNALKFYASVRL+I+R G +K+GEE +G++
Sbjct: 184 SNCMCIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYN-DRNFRGK 302
+K+VKNK+A PFK A ++ +G+G +RE E+IDL +KHK K+GA ++YN D+ +GK
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301
Query: 303 EAFKQFLVENESVREELVIKLREKLV 328
++L EN + + L KLRE L+
Sbjct: 302 ANACKYLKENPEIAKTLDKKLREMLL 327
|
|
| TIGR_CMR|VC_0543 VC_0543 "recA protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
Identities = 174/326 (53%), Positives = 227/326 (69%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+VEI
Sbjct: 5 KQKALAAALGQIEKQFGKGSIMRLGDN-RAMDVETISTGSLSLDIALGAGGLPMGRIVEI 63
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
+GPE+SGKTTL L +IA AQR+G C FIDAEHALDP A+ +GV + LL++QPD GEQ
Sbjct: 64 FGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQ 123
Query: 124 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D L RSG L PK E++GEMGD+HM +QAR++SQA+RKL+ +L
Sbjct: 124 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQ 183
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S + IFINQ+R K+ FG P E T GGNALKFYASVRL+I+R G +K+GEE +G++
Sbjct: 184 SNCMCIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYN-DRNFRGK 302
+K+VKNK+A PFK A ++ +G+G +RE E+IDL +KHK K+GA ++YN D+ +GK
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301
Query: 303 EAFKQFLVENESVREELVIKLREKLV 328
++L EN + + L KLRE L+
Sbjct: 302 ANACKYLKENPEIAKTLDKKLREMLL 327
|
|
| UNIPROTKB|P0A5U4 recA "Protein RecA" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 690 (248.0 bits), Expect = 5.7e-86, Sum P(2) = 5.7e-86
Identities = 137/248 (55%), Positives = 180/248 (72%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
++ AL+ A+ QI S+GKGS+M LG + + V+ TGS ALD+ALG GGLP+GRV+EI
Sbjct: 7 REKALELAVAQIEKSYGKGSVMRLGDEAR-QPISVIPTGSIALDVALGIGGLPRGRVIEI 65
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTT+ALH +A AQ GG FIDAEHALDP A+ +GV T++LL++QPD GEQ
Sbjct: 66 YGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQ 125
Query: 124 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D LIRSG LVP+ EL+GEMGD+H+ +QARLMSQALRK++ +L+
Sbjct: 126 ALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNN 185
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T IFINQ+R K+ FG P E T GG ALKFYASVR++++R+ +K G +G++
Sbjct: 186 SGTTAIFINQLRDKIGVM-FGSP-ETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRT 243
Query: 244 AVKIVKNK 251
VK+VKNK
Sbjct: 244 RVKVVKNK 251
|
|
| TIGR_CMR|GSU_0145 GSU_0145 "recA protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
Identities = 172/326 (52%), Positives = 233/326 (71%)
Query: 3 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVE 62
+++ A++ AL QI FGKG+IM LG V + TGS +LD+ALG GG+P+GR++E
Sbjct: 4 EREKAIELALSQIEKQFGKGAIMRLGADEALPDVAAIPTGSLSLDLALGVGGVPRGRIIE 63
Query: 63 IYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE 122
IYGPE+SGKTTLALH+ AEAQ+ GG F+DAEHALD A +GVKT++LL++QPD GE
Sbjct: 64 IYGPESSGKTTLALHIAAEAQKMGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGE 123
Query: 123 QALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS 182
QAL + + L+RSG LVPK E++GEMGD+HM +QARLMSQALRKL+ +S
Sbjct: 124 QALEIAEMLVRSGAVDVLVIDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLTGIIS 183
Query: 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 242
S +IFINQ+R K+ FG P E T GGNALKFYASVRL+I++I +K+G++ IGS+
Sbjct: 184 KSNCCVIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRKIASLKQGQDVIGSR 241
Query: 243 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYN-DRNFRG 301
VK+VKNK+APPFK +F++ +G+GISRE +I+DLA++ K+GA F+Y DR +G
Sbjct: 242 TKVKVVKNKVAPPFKEVEFDIYYGEGISREGDILDLAVEKGIVDKSGAWFSYGGDRIGQG 301
Query: 302 KEAFKQFLVENESVREELVIKLREKL 327
+E + FL E R ELV ++ K+
Sbjct: 302 RENSRLFLKE----RPELVNEIEGKV 323
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A6U9N5 | RECA_SINMW | No assigned EC number | 0.5830 | 0.8907 | 0.9030 | yes | no |
| Q11IW6 | RECA_MESSB | No assigned EC number | 0.5895 | 0.8770 | 0.8916 | yes | no |
| P65975 | RECA_BRUME | No assigned EC number | 0.5833 | 0.8770 | 0.8891 | yes | no |
| A5ICV8 | RECA_LEGPC | No assigned EC number | 0.5797 | 0.8825 | 0.9281 | yes | no |
| C0RJG9 | RECA_BRUMB | No assigned EC number | 0.5833 | 0.8770 | 0.8891 | yes | no |
| B3PPU4 | RECA_RHIE6 | No assigned EC number | 0.5740 | 0.8907 | 0.9005 | yes | no |
| Q04761 | RECA_BRUAB | No assigned EC number | 0.5833 | 0.8770 | 0.8891 | yes | no |
| P27865 | RECA_RHIME | No assigned EC number | 0.5800 | 0.8907 | 0.9367 | yes | no |
| Q83CQ4 | RECA_COXBU | No assigned EC number | 0.5578 | 0.9344 | 0.9970 | yes | no |
| Q1QMW2 | RECA_NITHX | No assigned EC number | 0.5727 | 0.8743 | 0.8839 | yes | no |
| B9JFS7 | RECA_AGRRK | No assigned EC number | 0.5469 | 0.9344 | 0.9473 | yes | no |
| Q3ST50 | RECA_NITWN | No assigned EC number | 0.5415 | 0.9316 | 0.9419 | yes | no |
| Q2W9P9 | RECA_MAGSA | No assigned EC number | 0.5856 | 0.8688 | 0.8857 | yes | no |
| B4EUV6 | RECA_PROMH | No assigned EC number | 0.5663 | 0.9125 | 0.9408 | yes | no |
| Q31F89 | RECA_THICR | No assigned EC number | 0.5634 | 0.9125 | 0.9625 | yes | no |
| Q08327 | RECA_ACEPO | No assigned EC number | 0.5597 | 0.9234 | 0.9712 | N/A | no |
| C6DCR1 | RECA_PECCP | No assigned EC number | 0.5722 | 0.9234 | 0.9467 | yes | no |
| B1JJA2 | RECA_YERPY | No assigned EC number | 0.56 | 0.9344 | 0.9606 | yes | no |
| P11406 | RECA_PROMI | No assigned EC number | 0.5663 | 0.9125 | 0.9408 | yes | no |
| Q2RQH9 | RECA_RHORT | No assigned EC number | 0.5899 | 0.8579 | 0.8579 | yes | no |
| A9M5L8 | RECA_BRUC2 | No assigned EC number | 0.5833 | 0.8770 | 0.8891 | yes | no |
| P65976 | RECA_BRUSU | No assigned EC number | 0.5833 | 0.8770 | 0.8891 | yes | no |
| B9JX56 | RECA_AGRVS | No assigned EC number | 0.5864 | 0.8770 | 0.8867 | yes | no |
| Q5QUB8 | RECA_IDILO | No assigned EC number | 0.5603 | 0.9207 | 0.9059 | yes | no |
| Q2SBR7 | RECA_HAHCH | No assigned EC number | 0.5575 | 0.8961 | 0.9507 | yes | no |
| Q2K7T3 | RECA_RHIEC | No assigned EC number | 0.5740 | 0.8907 | 0.9005 | yes | no |
| A6X0E8 | RECA_OCHA4 | No assigned EC number | 0.5802 | 0.8770 | 0.8891 | yes | no |
| B5ZRG2 | RECA_RHILW | No assigned EC number | 0.5740 | 0.8907 | 0.9005 | yes | no |
| Q7N7A6 | RECA_PHOLL | No assigned EC number | 0.5781 | 0.9153 | 0.9436 | yes | no |
| Q5X4B5 | RECA_LEGPA | No assigned EC number | 0.5797 | 0.8825 | 0.9281 | yes | no |
| P33156 | RECA_AGRT5 | No assigned EC number | 0.5709 | 0.8907 | 0.8980 | yes | no |
| A7MJ38 | RECA_CROS8 | No assigned EC number | 0.5718 | 0.9344 | 0.9661 | yes | no |
| Q0AHX4 | RECA_NITEC | No assigned EC number | 0.5745 | 0.8715 | 0.9300 | yes | no |
| C3MD93 | RECA_RHISN | No assigned EC number | 0.5830 | 0.8907 | 0.9030 | yes | no |
| B2S648 | RECA_BRUA1 | No assigned EC number | 0.5833 | 0.8770 | 0.8891 | yes | no |
| Q05358 | RECA_LEGPN | No assigned EC number | 0.5766 | 0.8825 | 0.9281 | yes | no |
| B0CH00 | RECA_BRUSI | No assigned EC number | 0.5833 | 0.8770 | 0.8891 | yes | no |
| Q98NQ6 | RECA_RHILO | No assigned EC number | 0.5740 | 0.8770 | 0.8794 | yes | no |
| P24543 | RECA_RHIET | No assigned EC number | 0.5770 | 0.8907 | 0.9030 | yes | no |
| A5FXB8 | RECA_ACICJ | No assigned EC number | 0.5436 | 0.9234 | 0.9854 | yes | no |
| Q9ZUP2 | RECA3_ARATH | No assigned EC number | 0.7728 | 0.9836 | 0.8372 | yes | no |
| A5EW90 | RECA_DICNV | No assigned EC number | 0.5603 | 0.8743 | 0.9142 | yes | no |
| A4TQ50 | RECA_YERPP | No assigned EC number | 0.5628 | 0.9344 | 0.9606 | yes | no |
| Q2YRU7 | RECA_BRUA2 | No assigned EC number | 0.5833 | 0.8770 | 0.8891 | yes | no |
| Q1MFZ8 | RECA_RHIL3 | No assigned EC number | 0.5740 | 0.8907 | 0.8956 | yes | no |
| Q60BS8 | RECA_METCA | No assigned EC number | 0.5654 | 0.9098 | 0.9596 | yes | no |
| Q5ZUJ7 | RECA_LEGPH | No assigned EC number | 0.5797 | 0.8825 | 0.9281 | yes | no |
| Q5WVQ0 | RECA_LEGPL | No assigned EC number | 0.5797 | 0.8825 | 0.9281 | yes | no |
| C1D4J2 | RECA_LARHH | No assigned EC number | 0.5679 | 0.8770 | 0.9067 | yes | no |
| P24074 | RECA_RHILV | No assigned EC number | 0.5740 | 0.8907 | 0.9287 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 366 | |||
| PRK09354 | 349 | PRK09354, recA, recombinase A; Provisional | 0.0 | |
| cd00983 | 325 | cd00983, recA, RecA is a bacterial enzyme which ha | 1e-176 | |
| pfam00154 | 322 | pfam00154, RecA, recA bacterial DNA recombination | 1e-169 | |
| TIGR02012 | 321 | TIGR02012, tigrfam_recA, protein RecA | 1e-162 | |
| COG0468 | 279 | COG0468, RecA, RecA/RadA recombinase [DNA replicat | 3e-96 | |
| PRK09519 | 790 | PRK09519, recA, DNA recombination protein RecA; Re | 7e-90 | |
| cd01393 | 226 | cd01393, recA_like, RecA is a bacterial enzyme whi | 5e-79 | |
| cd01123 | 235 | cd01123, Rad51_DMC1_radA, Rad51_DMC1_radA,B | 5e-22 | |
| PRK09519 | 790 | PRK09519, recA, DNA recombination protein RecA; Re | 8e-15 | |
| cd01120 | 165 | cd01120, RecA-like_NTPases, RecA-like NTPases | 2e-12 | |
| TIGR02237 | 209 | TIGR02237, recomb_radB, DNA repair and recombinati | 2e-12 | |
| cd01394 | 218 | cd01394, radB, RadB | 4e-12 | |
| PRK09361 | 225 | PRK09361, radB, DNA repair and recombination prote | 5e-12 | |
| COG0467 | 260 | COG0467, RAD55, RecA-superfamily ATPases implicate | 4e-08 | |
| PLN03186 | 342 | PLN03186, PLN03186, DNA repair protein RAD51 homol | 5e-08 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 5e-08 | |
| PRK04301 | 317 | PRK04301, radA, DNA repair and recombination prote | 1e-07 | |
| TIGR02236 | 310 | TIGR02236, recomb_radA, DNA repair and recombinati | 5e-07 | |
| TIGR02238 | 313 | TIGR02238, recomb_DMC1, meiotic recombinase Dmc1 | 7e-07 | |
| pfam08423 | 261 | pfam08423, Rad51, Rad51 | 7e-07 | |
| TIGR03880 | 224 | TIGR03880, KaiC_arch_3, KaiC domain protein, AF_03 | 3e-06 | |
| PLN03187 | 344 | PLN03187, PLN03187, meiotic recombination protein | 4e-06 | |
| cd01121 | 372 | cd01121, Sms, Sms (bacterial radA) DNA repair prot | 5e-06 | |
| pfam06745 | 231 | pfam06745, KaiC, KaiC | 6e-06 | |
| TIGR02239 | 316 | TIGR02239, recomb_RAD51, DNA repair protein RAD51 | 1e-05 | |
| PTZ00035 | 337 | PTZ00035, PTZ00035, Rad51 protein; Provisional | 1e-05 | |
| TIGR03881 | 229 | TIGR03881, KaiC_arch_4, KaiC domain protein, PAE11 | 5e-05 | |
| PRK11823 | 446 | PRK11823, PRK11823, DNA repair protein RadA; Provi | 5e-05 | |
| PRK09302 | 509 | PRK09302, PRK09302, circadian clock protein KaiC; | 7e-05 | |
| COG1066 | 456 | COG1066, Sms, Predicted ATP-dependent serine prote | 0.001 | |
| TIGR03600 | 420 | TIGR03600, phage_DnaB, phage replicative helicase, | 0.003 | |
| pfam13481 | 154 | pfam13481, AAA_25, AAA domain | 0.003 |
| >gnl|CDD|236476 PRK09354, recA, recombinase A; Provisional | Back alignment and domain information |
|---|
Score = 521 bits (1345), Expect = 0.0
Identities = 200/347 (57%), Positives = 259/347 (74%), Gaps = 4/347 (1%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
+K AL+ AL QI FGKGSIM LG V V+STGS ALDIALG GGLP+GR+
Sbjct: 4 DEEKQKALEAALKQIEKQFGKGSIMRLGDD-AAMDVEVISTGSLALDIALGIGGLPRGRI 62
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120
VEIYGPE+SGKTTLALH IAEAQ+ GG FIDAEHALDP A+ +GV +NLL++QPD
Sbjct: 63 VEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDT 122
Query: 121 GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180
GEQAL + DTL+RSG+VD++VVDSVAALVPK E++GEMGD+H+ +QARLMSQALRKL+ +
Sbjct: 123 GEQALEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGN 182
Query: 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIG 240
+S S T +IFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG +K G+E IG
Sbjct: 183 ISKSNTTVIFINQIREKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGTIKDGDEVIG 240
Query: 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF- 299
++ VK+VKNK+APPFK A+F++ +G+GISRE E+IDL ++ K+GA ++YN
Sbjct: 241 NRTKVKVVKNKVAPPFKQAEFDIMYGEGISREGELIDLGVELGIIEKSGAWYSYNGEKIG 300
Query: 300 RGKEAFKQFLVENESVREELVIKLREKLVVDHKEPQTAVTDEDSTEE 346
+G+E KQ+L EN + +E+ K+REKL + + +++ EE
Sbjct: 301 QGRENAKQYLKENPELADEIEKKIREKLGLSAAAAEEEEEEDEEEEE 347
|
Length = 349 |
| >gnl|CDD|238483 cd00983, recA, RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Score = 493 bits (1271), Expect = e-176
Identities = 194/326 (59%), Positives = 252/326 (77%), Gaps = 4/326 (1%)
Query: 3 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVE 62
+K AL+ AL QI FGKGSIM LG + V V+ TGS +LDIALG GG PKGR++E
Sbjct: 1 EKQKALELALKQIEKKFGKGSIMKLGDDAV-QDVEVIPTGSLSLDIALGIGGYPKGRIIE 59
Query: 63 IYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE 122
IYGPE+SGKTTLALH IAEAQ+ GG FIDAEHALDP A+ +GV +NLL++QPD GE
Sbjct: 60 IYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGE 119
Query: 123 QALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS 182
QAL + D+L+RSG+VD++VVDSVAALVPK E++GEMGD+H+ +QARLMSQALRKL+ S++
Sbjct: 120 QALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSIN 179
Query: 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 242
S T +IFINQ+R K+ FG P E T GGNALKFY+SVRL+I+RI +K G+E IG++
Sbjct: 180 KSNTTVIFINQLREKIGVM-FGNP-ETTTGGNALKFYSSVRLDIRRIETIKDGDEVIGNR 237
Query: 243 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RG 301
VK+VKNK+APPFKTA+F++ FG+GISRE EIIDLA++ K+G+ ++Y D +G
Sbjct: 238 TKVKVVKNKVAPPFKTAEFDILFGEGISREGEIIDLAVELGIIKKSGSWYSYGDEKLGQG 297
Query: 302 KEAFKQFLVENESVREELVIKLREKL 327
+E K++L EN + +E+ K+REKL
Sbjct: 298 RENAKEYLKENPELADEIEKKVREKL 323
|
RecA couples ATP hydrolysis to DNA strand exchange. Length = 325 |
| >gnl|CDD|215755 pfam00154, RecA, recA bacterial DNA recombination protein | Back alignment and domain information |
|---|
Score = 474 bits (1222), Expect = e-169
Identities = 197/322 (61%), Positives = 248/322 (77%), Gaps = 4/322 (1%)
Query: 7 ALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGP 66
AL+ AL QI FGKGSIM LG V V+STGS LDIALG GGLPKGR++EIYGP
Sbjct: 2 ALEAALSQIEKQFGKGSIMRLGDKTVED-VEVISTGSLGLDIALGIGGLPKGRIIEIYGP 60
Query: 67 EASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALS 126
E+SGKTTLALH IAEAQ+ GG FIDAEHALDP A+ +GV +NLL++QPD GEQAL
Sbjct: 61 ESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALE 120
Query: 127 LVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 186
+ D L+RSG+VD++VVDSVAALVPK E++GEMGD+H+ +QARLMSQALRKL+ ++S S T
Sbjct: 121 IADMLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNT 180
Query: 187 ILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVK 246
+IFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG +KKGEE IG++ VK
Sbjct: 181 TVIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAIKKGEEVIGNRTKVK 238
Query: 247 IVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAF 305
+VKNK+APPFK A+F++ +G+GIS+E E+IDL +K K+GA ++YN +G+E
Sbjct: 239 VVKNKVAPPFKQAEFDIMYGEGISKEGELIDLGVKLGIVEKSGAWYSYNGEKIGQGRENA 298
Query: 306 KQFLVENESVREELVIKLREKL 327
KQ+L EN + E+ K+REKL
Sbjct: 299 KQYLKENPEIAAEIEQKIREKL 320
|
RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyzes an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination. Length = 322 |
| >gnl|CDD|162659 TIGR02012, tigrfam_recA, protein RecA | Back alignment and domain information |
|---|
Score = 456 bits (1175), Expect = e-162
Identities = 191/324 (58%), Positives = 247/324 (76%), Gaps = 4/324 (1%)
Query: 3 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVE 62
+K AL+ AL QI FGKGSIM LG + V +STGS +LD+ALG GGLP+GR++E
Sbjct: 1 EKQKALEAALAQIEKQFGKGSIMRLGEK-SVMDVETISTGSLSLDLALGVGGLPRGRIIE 59
Query: 63 IYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE 122
IYGPE+SGKTTLALH IAEAQ+ GG FIDAEHALDP A +GV +NLL++QPD GE
Sbjct: 60 IYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGE 119
Query: 123 QALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS 182
QAL + +TL+RSG+VD++VVDSVAALVPK E++GEMGD+H+ +QARLMSQALRKL+ +LS
Sbjct: 120 QALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALS 179
Query: 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 242
S T IFINQ+R K+ FG P E T GG ALKFYASVRL+I+RIG VK+GEE +G++
Sbjct: 180 KSNTTAIFINQIREKIGVM-FGNP-ETTTGGRALKFYASVRLDIRRIGQVKQGEEVVGNR 237
Query: 243 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RG 301
VK+VKNK+APPFK A+F++ +G+GIS+ EIIDLA++ KAG+ ++Y D +G
Sbjct: 238 TKVKVVKNKVAPPFKEAEFDILYGEGISKLGEIIDLAVELDIIKKAGSWYSYGDEKLGQG 297
Query: 302 KEAFKQFLVENESVREELVIKLRE 325
+E K +L EN + +E+ K+RE
Sbjct: 298 RENAKAYLKENPELAQEIEKKVRE 321
|
This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage [DNA metabolism, DNA replication, recombination, and repair]. Length = 321 |
| >gnl|CDD|223544 COG0468, RecA, RecA/RadA recombinase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 287 bits (736), Expect = 3e-96
Identities = 153/286 (53%), Positives = 201/286 (70%), Gaps = 13/286 (4%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
++ AL+ AL QI +FGKGSIM LG + +STGS ALD ALG GGLP+GR+
Sbjct: 4 GIDEEKALEAALAQIEKAFGKGSIMALGGDERREDIEAISTGSLALDEALG-GGLPRGRI 62
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGV-KTENLLLAQPD 119
EIYGPE+SGKTTLAL ++A AQ+ GG FID EHALDP A+ +GV +NLL++QPD
Sbjct: 63 TEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPD 122
Query: 120 CGEQALSLVDTLIRSGS--VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 177
GEQ L + + L RSG+ +D++VVDSVAALV E+ D H+ ++ARL+S+ALRKL
Sbjct: 123 TGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEI----EDGHLGLRARLLSKALRKL 178
Query: 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEE 237
+ + T +IF NQVRAK+ FG P E T GGNALKFYASVRL+++RI +K E
Sbjct: 179 TRLANKYNTAVIFTNQVRAKIGVM-FGDP-ETTTGGNALKFYASVRLDLRRIESLK---E 233
Query: 238 TIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHK 283
+G++ VK+VKNK+APPFK A+F++ +G GI RE E+IDL +K
Sbjct: 234 DVGNKRRVKVVKNKVAPPFKEAEFDITYGGGIDREGELIDLGVKQG 279
|
Length = 279 |
| >gnl|CDD|77219 PRK09519, recA, DNA recombination protein RecA; Reviewed | Back alignment and domain information |
|---|
Score = 286 bits (732), Expect = 7e-90
Identities = 145/248 (58%), Positives = 192/248 (77%), Gaps = 3/248 (1%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
++ AL+ A+ QI S+GKGS+M LG + + V+ TGS ALD+ALG GGLP+GRV+EI
Sbjct: 7 REKALELAVAQIEKSYGKGSVMRLGDEAR-QPISVIPTGSIALDVALGIGGLPRGRVIEI 65
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTT+ALH +A AQ GG FIDAEHALDP A+ +GV T++LL++QPD GEQ
Sbjct: 66 YGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQ 125
Query: 124 ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D LIRSG++D+VV+DSVAALVP+ EL+GEMGD+H+ +QARLMSQALRK++ +L+
Sbjct: 126 ALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNN 185
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T IFINQ+R K+ FG P E T GG ALKFYASVR++++R+ +K G +G++
Sbjct: 186 SGTTAIFINQLRDKIGVM-FGSP-ETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRT 243
Query: 244 AVKIVKNK 251
VK+VKNK
Sbjct: 244 RVKVVKNK 251
|
Length = 790 |
| >gnl|CDD|238687 cd01393, recA_like, RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Score = 241 bits (617), Expect = 5e-79
Identities = 100/240 (41%), Positives = 130/240 (54%), Gaps = 31/240 (12%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG------GYCVFI 92
+STGS ALD LG GG+P GR+ EI+G SGKT L L + EAQ G G V+I
Sbjct: 1 ISTGSKALDELLG-GGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYI 59
Query: 93 DAEHALDPSLAETIGVK--------TENLLLAQPDCGEQALSLVDTLIR---SGSVDVVV 141
D E A P + V+ +N+ +A+P GEQ L +V+ L R SG VD+VV
Sbjct: 60 DTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVV 119
Query: 142 VDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTF 201
VDSVAAL K + M +A +ARL+SQALRKL ++F NQVRAK+
Sbjct: 120 VDSVAALFRKEFIGRGM----LAERARLLSQALRKLLRLADKFNVAVVFTNQVRAKVDVM 175
Query: 202 GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQF 261
FG P E GGNAL ++ RL ++KG IG + K+VK+ A P A+F
Sbjct: 176 -FGDP-ETPAGGNALAHASTTRL------DLRKGRGIIGERRIAKVVKSP-ALPEAEAEF 226
|
RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. Length = 226 |
| >gnl|CDD|238543 cd01123, Rad51_DMC1_radA, Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 5e-22
Identities = 73/244 (29%), Positives = 109/244 (44%), Gaps = 34/244 (13%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR---QGGY---CVFI 92
++TGS ALD LG GG+ G + EI+G SGKT L + Q GG V+I
Sbjct: 1 LTTGSKALDELLG-GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYI 59
Query: 93 DAEHALDP----SLAETIGVKTENLL----LAQP-DCGEQAL---SLVDTLIRSGSVDVV 140
D E P +AE G+ E +L +A+ + Q L LI S + +V
Sbjct: 60 DTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLV 119
Query: 141 VVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLST 200
+VDSV AL E DG A + + L++L+ +++ ++ NQV A+
Sbjct: 120 IVDSVTALFRA-EFDGRGELAERQQHLAKLLRTLKRLADEFNVA---VVITNQVTARPDG 175
Query: 201 F-GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTA 259
FGG + GGN ++ RL +++ +GEE I KIV + P A
Sbjct: 176 AAMFGGDPKKPAGGNIWAHASTTRLYLRK----GRGEERI-----AKIVDSPHLPEG-EA 225
Query: 260 QFEL 263
F +
Sbjct: 226 VFAI 229
|
This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . Length = 235 |
| >gnl|CDD|77219 PRK09519, recA, DNA recombination protein RecA; Reviewed | Back alignment and domain information |
|---|
Score = 75.5 bits (185), Expect = 8e-15
Identities = 42/110 (38%), Positives = 65/110 (59%), Gaps = 6/110 (5%)
Query: 237 ETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYND 296
E + + +A +V + +PPFK A+F++ +GKGISRE +ID+ + K+GA FTY
Sbjct: 677 EELHTLVAEGVVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEG 736
Query: 297 RNF-RGKEAFKQFLVENESVREELVIKLREKLVVDHKEPQTAVTDEDSTE 345
+GKE + FLVEN V +E+ K++EKL + VTD+ S +
Sbjct: 737 EQLGQGKENARNFLVENADVADEIEKKIKEKLGIG-----AVVTDDPSND 781
|
Length = 790 |
| >gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-12
Identities = 38/177 (21%), Positives = 74/177 (41%), Gaps = 20/177 (11%)
Query: 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP----SLAETIGVKTENLLL 115
++ ++GP SGKTTLAL + +GG V++D E ++ + E++ +NL++
Sbjct: 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLII 60
Query: 116 AQPDCGEQALSLVDT----LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS 171
+ A + + + L G D++++D + LV E + + R +
Sbjct: 61 VFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELL 120
Query: 172 QALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228
+ RK + +IF QV + +T G L+ A + + R
Sbjct: 121 ERARKGGVT-------VIFTLQVPSGDKGDP-----RLTRGAQNLEDIADTVIVLSR 165
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Length = 165 |
| >gnl|CDD|233793 TIGR02237, recomb_radB, DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-12
Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 22/161 (13%)
Query: 46 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP----S 101
+D LG GG+ +G + +IYGP SGKT + + + A RQG V+ID E L P
Sbjct: 1 IDELLG-GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE-GLSPERFKQ 58
Query: 102 LAETIGVKT-ENLLLAQP---DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGE 157
+AE + N ++ + D A+ I S +VVVDS AL + EL +
Sbjct: 59 IAEDRPERALSNFIVFEVFDFDEQGVAIQKTSKFIDRDSASLVVVDSFTALY-RLELSDD 117
Query: 158 MGDAHMAMQARLMSQALRKLSHSLSLSQT---ILIFINQVR 195
+ + R+L+ LSL++ ++ NQV
Sbjct: 118 RISRNRELA--------RQLTLLLSLARKKNLAVVITNQVY 150
|
This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). Length = 209 |
| >gnl|CDD|238688 cd01394, radB, RadB | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 4e-12
Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 17/165 (10%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 98
+ TG LD LG GG+ +G V ++YGP +GKT +A+ + E QG +ID E
Sbjct: 1 LPTGCKGLDELLG-GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLS 59
Query: 99 DPSLAETIGVKTE----NLLLAQP-DCGEQALSLVDTL-IRSGSVDVVVVDSVAALV-PK 151
+ G + E ++++ +P D EQ ++ +T VD+VVVDS AL +
Sbjct: 60 SERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQETETFADEKVDLVVVDSATALYRLE 119
Query: 152 GELDGEMGDAH--MAMQARLMSQALRKLSHSLSLSQTILIFINQV 194
D + +A Q + RK H ++ ++ NQV
Sbjct: 120 LGDDDTTIKNYRELAKQLTFLLWLARK--HDVA-----VVITNQV 157
|
The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear. Length = 218 |
| >gnl|CDD|236482 PRK09361, radB, DNA repair and recombination protein RadB; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 5e-12
Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 28/185 (15%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE--- 95
+ TG LD LG GG +G + +IYGP SGKT + L + EA + G ++ID E
Sbjct: 5 LPTGCKMLDELLG-GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLS 63
Query: 96 ----HALDPSLAETIGVKTENLLLAQP-DCGEQALSLVDT-LIRSGSVDVVVVDSVAALV 149
+ E + N+++ +P EQ+ ++ + +V ++V+DS +L
Sbjct: 64 PERFKQIAGEDFEEL---LSNIIIFEPSSFEEQSEAIRKAEKLAKENVGLIVLDSATSLY 120
Query: 150 PKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT----ILIFINQVRAKLSTFGF-- 203
+ EL+ E ++L + R+L+H L L++ ++I NQV + + + G
Sbjct: 121 -RLELEDEED------NSKLNRELGRQLTHLLKLARKHDLAVVI-TNQVYSDIDSDGLRP 172
Query: 204 -GGPT 207
GG T
Sbjct: 173 LGGHT 177
|
Length = 225 |
| >gnl|CDD|223543 COG0467, RAD55, RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 4e-08
Identities = 39/133 (29%), Positives = 52/133 (39%), Gaps = 24/133 (18%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE--- 95
+ TG LD LG GGLP+G VV I GP +GKT AL + E R+G +++ E
Sbjct: 5 IPTGIPGLDEILG-GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESP 63
Query: 96 ---HALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT-----------------LIRSG 135
S + V E LA D LV ++
Sbjct: 64 EELLENARSFGWDLEVYIEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKE 123
Query: 136 SVDVVVVDSVAAL 148
D VV+DS+ L
Sbjct: 124 GADRVVIDSITEL 136
|
Length = 260 |
| >gnl|CDD|178728 PLN03186, PLN03186, DNA repair protein RAD51 homolog; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 5e-08
Identities = 68/253 (26%), Positives = 108/253 (42%), Gaps = 53/253 (20%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ---RQG---GYCVFI 92
++TGS LD L GG+ G + EIYG +GKT L + Q QG G ++I
Sbjct: 105 ITTGSRELDKILE-GGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYI 163
Query: 93 DAEHALDP----SLAETIGVKT----ENLLLAQPDCGEQALSLVDTLIRSGS------VD 138
D E P +AE G+ EN+ A+ + L L+ + S
Sbjct: 164 DTEGTFRPQRLIQIAERFGLNGADVLENVAYARAYNTDHQSEL---LLEAASMMAETRFA 220
Query: 139 VVVVDSVAAL-----VPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFI-N 192
+++VDS AL +GEL + + + + LR L L+ + + I N
Sbjct: 221 LMIVDSATALYRTEFSGRGEL---------SARQMHLGKFLRSLQR-LADEFGVAVVITN 270
Query: 193 QVRAKL--STFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKN 250
QV A++ S F F GP GGN + ++ RL +++ +GE I K++ +
Sbjct: 271 QVVAQVDGSAF-FAGPQLKPIGGNIMAHASTTRLALRK----GRGENRI-----CKVISS 320
Query: 251 KLAPPFKTAQFEL 263
P A+F +
Sbjct: 321 PCLPE-AEARFSI 332
|
Length = 342 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 5e-08
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLA 116
G V+ I GP SGKTTLA + E GG ++ID E L+ L + + + +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 117 QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 176
GE L L L R DV+++D + +L+ + + + + L S+
Sbjct: 61 --GSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLT 118
Query: 177 L 177
+
Sbjct: 119 V 119
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|235273 PRK04301, radA, DNA repair and recombination protein RadA; Validated | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 62/215 (28%), Positives = 101/215 (46%), Gaps = 39/215 (18%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKT----TLALHVIAEAQRQG--GYCVFI 92
++TGS LD LG GG+ + E YG SGKT LA++V ++ G G V+I
Sbjct: 84 ITTGSKELDELLG-GGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYI 142
Query: 93 DAEHALDP----SLAETIGVKTE----NLLLAQPDCGEQALSLVD---TLIRSG-SVDVV 140
D E P +AE +G+ + N+ +A+ + + L + LI+ G ++ +V
Sbjct: 143 DTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGENIKLV 202
Query: 141 VVDSVAAL-----VPKGELDGEMGDAHMAMQARLMSQ--ALRKLSHSLSLSQTILIFINQ 193
+VDS+ A V +G L Q +L L +L+ L ++ NQ
Sbjct: 203 IVDSLTAHFRAEYVGRGNL--------AERQQKLNKHLHDLLRLA---DLYNAAVVVTNQ 251
Query: 194 VRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228
V A+ F FG PT+ GG+ L A+ R+ +++
Sbjct: 252 VMARPDAF-FGDPTQ-PIGGHILGHTATFRIYLRK 284
|
Length = 317 |
| >gnl|CDD|131290 TIGR02236, recomb_radA, DNA repair and recombination protein RadA | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 5e-07
Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 36/214 (16%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKT----TLALHVIAEAQRQG--GYCVFI 92
++TGS LD LG GG+ + E++G SGKT LA++V ++ G G V+I
Sbjct: 77 ITTGSKELDELLG-GGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYI 135
Query: 93 DAEHALDP----SLAETIGVKTE----NLLLAQPDCGEQALSLVD---TLIRSG--SVDV 139
D E+ P +AE G+ + N+ +A+ + LV+ LI+ V +
Sbjct: 136 DTENTFRPERIMQMAEARGLDPDEVLKNIYVARAYNSNHQMLLVEKAEDLIKELNNPVKL 195
Query: 140 VVVDSVAA-----LVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 194
++VDS+ + V +G L A + + +++ L L L ++ NQV
Sbjct: 196 LIVDSLTSHFRAEYVGRGAL---------AERQQKLNKHLHDLLRLADLYNAAVVVTNQV 246
Query: 195 RAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228
A+ F FG PT GG+ L A+ R+ +++
Sbjct: 247 MARPDAF-FGDPTR-PIGGHILGHAATFRVYLRK 278
|
This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein [DNA metabolism, DNA replication, recombination, and repair]. Length = 310 |
| >gnl|CDD|131292 TIGR02238, recomb_DMC1, meiotic recombinase Dmc1 | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 7e-07
Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 43/230 (18%)
Query: 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLA--LHVIAEAQRQGGY----C 89
V ++TGS ALD LG GG+ + E++G GKT L+ L V A+ R+ G
Sbjct: 75 VLKITTGSQALDGILG-GGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKV 133
Query: 90 VFIDAEHALDP----SLAETIGVK----TENLLLAQPDCGEQALSLVDTL---IRSGSVD 138
+ID E P ++AE GV +N+L A+ E + L+D L
Sbjct: 134 AYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAYTSEHQMELLDYLAAKFSEEPFR 193
Query: 139 VVVVDSVAALVP-----KGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFI-N 192
+++VDS+ AL +GEL + + + ++Q L +L+ +S + +F+ N
Sbjct: 194 LLIVDSIMALFRVDFSGRGEL---------SERQQKLAQMLSRLNK-ISEEFNVAVFVTN 243
Query: 193 QVRAK---LSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETI 239
QV+A TF + GG+ L ++ R+ +++ +GEE +
Sbjct: 244 QVQADPGATMTFIADPKKPI--GGHVLAHASTTRILLRK----GRGEERV 287
|
This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis. Length = 313 |
| >gnl|CDD|117002 pfam08423, Rad51, Rad51 | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 7e-07
Identities = 60/250 (24%), Positives = 107/250 (42%), Gaps = 45/250 (18%)
Query: 15 ITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTL 74
+ F + + RS R ++TGS LD LG GG+ G + E++G +GKT L
Sbjct: 5 VPMGFTTATELHQRRSEVIR----ITTGSKELDKLLG-GGIETGSITEVFGEFRTGKTQL 59
Query: 75 ALHVIA-------EAQRQGGYCVFIDAEHALDP----SLAETIGVKTE----NLLLAQPD 119
H + E G ++ID E P ++AE G+ E N+ A+
Sbjct: 60 C-HTLCVTCQLPLEMGGGEGKALYIDTEGTFRPERIVAIAERFGLDPEEVLDNIAYARAY 118
Query: 120 CGEQALSLVDT---LIRSGSVDVVVVDSVAALVP-----KGELDGEMGDAHMAMQARLMS 171
E + L+ ++ +++VDS AL +GEL A + + ++
Sbjct: 119 NTEHQMQLLLQAAAMMSESRFALLIVDSATALYRTDFSGRGEL---------AERQQHLA 169
Query: 172 QALRKLSHSLSLSQTILIFI-NQVRAKLSTFG-FGGPTEVTCGGNALKFYASVRLNIKRI 229
+ LR L L+ + + I NQV A++ F + GG+ + ++ RL +++
Sbjct: 170 KFLRSLQR-LADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGHIMAHASTTRLYLRK- 227
Query: 230 GLVKKGEETI 239
+GE+ +
Sbjct: 228 ---GRGEQRV 234
|
Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein. Length = 261 |
| >gnl|CDD|163592 TIGR03880, KaiC_arch_3, KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 3e-06
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 14/116 (12%)
Query: 46 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSL--A 103
LD LG GG P+G V+ + G +GKTT +L + + + G ++I E + L A
Sbjct: 5 LDEMLG-GGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYA 63
Query: 104 ETIGVKTE-----NLLLAQPDCGEQALSL------VDTLIRSGSVDVVVVDSVAAL 148
++ G E +L + + D + SL + LI+ VV+D ++ L
Sbjct: 64 KSKGWDLEDYIDKSLYIVRLDPSDFKTSLNRIKNELPILIKELGASRVVIDPISLL 119
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. Length = 224 |
| >gnl|CDD|215620 PLN03187, PLN03187, meiotic recombination protein DMC1 homolog; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 4e-06
Identities = 67/253 (26%), Positives = 106/253 (41%), Gaps = 46/253 (18%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA----QRQGGYC---VF 91
++TGS ALD LG GG+ + E +G SGKT LA H + GG +
Sbjct: 108 ITTGSQALDELLG-GGIETRCITEAFGEFRSGKTQLA-HTLCVTTQLPTEMGGGNGKVAY 165
Query: 92 IDAEHALDPS----LAETIGVKTE----NLLLAQPDCGEQALSLVDTLIRSGSVD---VV 140
ID E P +AE G+ + N++ A+ E +L+ L + + ++
Sbjct: 166 IDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225
Query: 141 VVDSVAAL-----VPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVR 195
+VDSV AL +GEL A + + ++Q L +L+ + NQV
Sbjct: 226 IVDSVIALFRVDFTGRGEL---------AERQQKLAQMLSRLTKIAEEFNVAVYMTNQVI 276
Query: 196 AKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP 255
A F + GG+ L A++RL +++KG+ G Q K+ AP
Sbjct: 277 ADPGGGMFISDPKKPAGGHVLAHAATIRL------MLRKGK---GEQRVCKVFD---APN 324
Query: 256 FKTAQFELEFGKG 268
A+ E + G
Sbjct: 325 LPEAEAEFQITSG 337
|
Length = 344 |
| >gnl|CDD|238541 cd01121, Sms, Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 5e-06
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 29 RSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY 88
+ + TG LD LG GGL G V+ I G GK+TL L V A ++GG
Sbjct: 54 SDIEAEEEERIPTGIEELDRVLG-GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGK 112
Query: 89 CVFIDAEHALDP--SLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSV 145
+++ E + + A+ +G+ TENL L E L + I D+V++DS+
Sbjct: 113 VLYVSGEESPEQIKLRADRLGISTENLYLLA----ETNLEDILASIEELKPDLVIIDSI 167
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. Length = 372 |
| >gnl|CDD|219158 pfam06745, KaiC, KaiC | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 6e-06
Identities = 48/192 (25%), Positives = 68/192 (35%), Gaps = 42/192 (21%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY-CVFIDA-EH 96
V TG LD + GG+P+GRVV I G +GKT L + + G V++ E
Sbjct: 1 VPTGIPGLD-EILKGGIPRGRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLEEP 59
Query: 97 ALDPSL---AETIGVKTENL----------LLAQPDCGEQAL------SLVDTL---IRS 134
D L A++ G E L + L++ L IR
Sbjct: 60 PED--LRENAKSFGWDLEKLEEEGKLAIIDASTSGIGIAEVKGRFDLEELIERLREAIRE 117
Query: 135 GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS-LSQTILIFINQ 193
VV+DS+ L AR + LR+L L L T IF ++
Sbjct: 118 IGAKRVVIDSITTLYLL----------LKPAMAR---EILRRLKRVLKKLGVTA-IFTSE 163
Query: 194 VRAKLSTFGFGG 205
+ G G
Sbjct: 164 KPSGEGGIGGYG 175
|
This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria. Length = 231 |
| >gnl|CDD|233794 TIGR02239, recomb_RAD51, DNA repair protein RAD51 | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 61/224 (27%), Positives = 105/224 (46%), Gaps = 36/224 (16%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ---RQG---GYCVFI 92
++TGS LD LG GG+ G + EI+G +GKT L + Q QG G ++I
Sbjct: 78 LTTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYI 136
Query: 93 DAEHALDP----SLAETIGVKTE----NLLLAQPDCGEQALSLVD---TLIRSGSVDVVV 141
D E P ++AE G+ E N+ A+ + L L+ ++ +++
Sbjct: 137 DTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLI 196
Query: 142 VDSVAALVPKGELD----GEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 197
VDS AL D GE+ M + AR + ++L++L+ ++ I NQV A+
Sbjct: 197 VDSATALY---RTDFSGRGELSARQMHL-ARFL-RSLQRLADEFGVAVVI---TNQVVAQ 248
Query: 198 L--STFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETI 239
+ + F G + GGN + ++ RL++++ +GE+ I
Sbjct: 249 VDGAGSMFAGDPKKPIGGNIMAHASTTRLSLRK----GRGEQRI 288
|
This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012). Length = 316 |
| >gnl|CDD|185407 PTZ00035, PTZ00035, Rad51 protein; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 37/224 (16%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIA-------EAQRQGGYCVF 91
++TGS LD LG GG+ G + E++G +GKT L H + E G ++
Sbjct: 100 ITTGSTQLDKLLG-GGIETGSITELFGEFRTGKTQLC-HTLCVTCQLPIEQGGGEGKVLY 157
Query: 92 IDAEHALDP----SLAETIGVKTE----NLLLAQPDCGE---QALSLVDTLIRSGSVDVV 140
ID E P +AE G+ E N+ A+ E Q LS + ++
Sbjct: 158 IDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAYNHEHQMQLLSQAAAKMAEERFALL 217
Query: 141 VVDSVAALVPKGELD----GEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRA 196
+VDS AL +D GE+ + + + + AL+KL+ +++ ++ NQV A
Sbjct: 218 IVDSATALF---RVDYSGRGELAERQQHL-GKFLR-ALQKLADEFNVA---VVITNQVMA 269
Query: 197 KLS-TFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETI 239
+ F + GG+ + ++ RL++++ +GE+ I
Sbjct: 270 DVDGASMFVADPKKPIGGHIIAHASTTRLSLRK----GRGEQRI 309
|
Length = 337 |
| >gnl|CDD|163593 TIGR03881, KaiC_arch_4, KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 5e-05
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 98
+STG LD L GG+P+G V + G +GKT LH + R G +++ E +
Sbjct: 2 LSTGVEGLDKLL-EGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESR 60
Query: 99 D 99
+
Sbjct: 61 E 61
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. Length = 229 |
| >gnl|CDD|236994 PRK11823, PRK11823, DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 5e-05
Identities = 41/122 (33%), Positives = 55/122 (45%), Gaps = 15/122 (12%)
Query: 30 SVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYC 89
+ P +STG LD LG GGL G VV I G GK+TL L V A GG
Sbjct: 53 DIEAEEEPRISTGIGELDRVLG-GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKV 111
Query: 90 VFIDAEHALDPSL------AETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVD 143
+++ E S AE +G+ ++NL L E L + I D+VV+D
Sbjct: 112 LYVSGEE----SASQIKLRAERLGLPSDNLYLLA----ETNLEAILATIEEEKPDLVVID 163
Query: 144 SV 145
S+
Sbjct: 164 SI 165
|
Length = 446 |
| >gnl|CDD|236461 PRK09302, PRK09302, circadian clock protein KaiC; Reviewed | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 7e-05
Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 13/128 (10%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 98
+S+G LD LG GG +G ++ + G +GKT LA A R+G C+ E +
Sbjct: 255 ISSGVPDLDEMLG-GGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESR 313
Query: 99 DPSL--AETIGVK-----TENLLLAQPD----CG-EQALSLVDTLIRSGSVDVVVVDSVA 146
+ A + G+ + LL G E L ++ I V +D ++
Sbjct: 314 AQLIRNARSWGIDLEKMEEKGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLS 373
Query: 147 ALVPKGEL 154
AL G L
Sbjct: 374 ALARGGSL 381
|
Length = 509 |
| >gnl|CDD|223993 COG1066, Sms, Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 30 SVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE-AQRQGGY 88
+ P +STG LD LG GGL G V+ I G GK+TL L V A A+R G
Sbjct: 66 DIELEEEPRISTGIEELDRVLG-GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR--GK 122
Query: 89 CVFIDAEHALDP-SL-AETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSV 145
+++ E +L L A+ +G+ T NL L E ++ ++ D+VV+DS+
Sbjct: 123 VLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQE----KPDLVVIDSI 177
|
Length = 456 |
| >gnl|CDD|213836 TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.003
Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE--AQRQGGYCVFID--- 93
+STG LD T GL KG ++ I + GKTTLAL+ IAE A R+G +F
Sbjct: 176 LSTGLPKLDRL--TNGLVKGDLIVIGARPSMGKTTLALN-IAENVALREGKPVLFFSLEM 232
Query: 94 -AEHALDPSLAETIGVKTENL 113
AE + LA G+ T N+
Sbjct: 233 SAEQLGERLLASKSGINTGNI 253
|
Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model [Mobile and extrachromosomal element functions, Prophage functions]. Length = 420 |
| >gnl|CDD|222165 pfam13481, AAA_25, AAA domain | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.003
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 29/111 (26%)
Query: 53 GGLPKGRVVEIYGPEASGKTTLALHV---IAEAQRQGGY-------CVFIDAEHALDPSL 102
G LP+G + + G +GK+TLAL + +A + G +++D E + L
Sbjct: 28 GLLPRGGLTLLAGAPGTGKSTLALDLAAAVATGRPFLGPFPVEPGRVLYLDGEDSEA-GL 86
Query: 103 AETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGE 153
+ +L + L D+VV+D +A+L+ E
Sbjct: 87 RRRL------------------RALGEALEEIEGPDLVVIDPLASLLGGDE 119
|
This AAA domain is found in a wide variety of presumed DNA repair proteins. Length = 154 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 366 | |||
| PF00154 | 322 | RecA: recA bacterial DNA recombination protein; In | 100.0 | |
| cd00983 | 325 | recA RecA is a bacterial enzyme which has roles in | 100.0 | |
| PRK09354 | 349 | recA recombinase A; Provisional | 100.0 | |
| TIGR02012 | 321 | tigrfam_recA protein RecA. This model describes or | 100.0 | |
| COG0468 | 279 | RecA RecA/RadA recombinase [DNA replication, recom | 100.0 | |
| PRK09519 | 790 | recA DNA recombination protein RecA; Reviewed | 100.0 | |
| PLN03187 | 344 | meiotic recombination protein DMC1 homolog; Provis | 100.0 | |
| TIGR02238 | 313 | recomb_DMC1 meiotic recombinase Dmc1. This model d | 100.0 | |
| PLN03186 | 342 | DNA repair protein RAD51 homolog; Provisional | 99.97 | |
| PTZ00035 | 337 | Rad51 protein; Provisional | 99.97 | |
| PF08423 | 256 | Rad51: Rad51; InterPro: IPR013632 This domain is f | 99.97 | |
| TIGR02239 | 316 | recomb_RAD51 DNA repair protein RAD51. This eukary | 99.97 | |
| COG1066 | 456 | Sms Predicted ATP-dependent serine protease [Postt | 99.97 | |
| PRK09361 | 225 | radB DNA repair and recombination protein RadB; Pr | 99.96 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has rol | 99.96 | |
| cd01394 | 218 | radB RadB. The archaeal protein radB shares simila | 99.96 | |
| TIGR02236 | 310 | recomb_radA DNA repair and recombination protein R | 99.96 | |
| PRK04301 | 317 | radA DNA repair and recombination protein RadA; Va | 99.96 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 99.96 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 99.96 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r | 99.95 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 99.95 | |
| TIGR02237 | 209 | recomb_radB DNA repair and recombination protein R | 99.94 | |
| TIGR03878 | 259 | thermo_KaiC_2 KaiC domain protein, AF_0795 family. | 99.94 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 99.93 | |
| KOG1434 | 335 | consensus Meiotic recombination protein Dmc1 [Cell | 99.93 | |
| PRK04328 | 249 | hypothetical protein; Provisional | 99.93 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 99.91 | |
| PF06745 | 226 | KaiC: KaiC; InterPro: IPR014774 This entry represe | 99.91 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 99.9 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 99.89 | |
| KOG1564 | 351 | consensus DNA repair protein RHP57 [Replication, r | 99.89 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 99.88 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 99.88 | |
| TIGR03600 | 421 | phage_DnaB phage replicative helicase, DnaB family | 99.88 | |
| PRK09302 | 509 | circadian clock protein KaiC; Reviewed | 99.87 | |
| PHA02542 | 473 | 41 41 helicase; Provisional | 99.87 | |
| PRK09302 | 509 | circadian clock protein KaiC; Reviewed | 99.87 | |
| PRK05748 | 448 | replicative DNA helicase; Provisional | 99.87 | |
| PRK08760 | 476 | replicative DNA helicase; Provisional | 99.87 | |
| TIGR00665 | 434 | DnaB replicative DNA helicase. This model describe | 99.87 | |
| PF03796 | 259 | DnaB_C: DnaB-like helicase C terminal domain; Inte | 99.87 | |
| PRK05595 | 444 | replicative DNA helicase; Provisional | 99.86 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 99.86 | |
| PRK09165 | 497 | replicative DNA helicase; Provisional | 99.86 | |
| PRK05636 | 505 | replicative DNA helicase; Provisional | 99.86 | |
| PRK08006 | 471 | replicative DNA helicase; Provisional | 99.85 | |
| PRK07004 | 460 | replicative DNA helicase; Provisional | 99.85 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 99.85 | |
| PRK08506 | 472 | replicative DNA helicase; Provisional | 99.84 | |
| PRK08840 | 464 | replicative DNA helicase; Provisional | 99.84 | |
| PRK06904 | 472 | replicative DNA helicase; Validated | 99.84 | |
| PRK06321 | 472 | replicative DNA helicase; Provisional | 99.83 | |
| PRK06749 | 428 | replicative DNA helicase; Provisional | 99.82 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.82 | |
| COG0305 | 435 | DnaB Replicative DNA helicase [DNA replication, re | 99.8 | |
| COG0467 | 260 | RAD55 RecA-superfamily ATPases implicated in signa | 99.79 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.74 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 99.73 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.71 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.71 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.69 | |
| COG2874 | 235 | FlaH Predicted ATPases involved in biogenesis of a | 99.69 | |
| KOG1433 | 326 | consensus DNA repair protein RAD51/RHP55 [Replicat | 99.68 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.67 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.66 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 99.65 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 99.65 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.65 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.64 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 99.64 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.64 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.61 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.6 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.59 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.59 | |
| PRK07773 | 886 | replicative DNA helicase; Validated | 99.58 | |
| PF13481 | 193 | AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. | 99.57 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.56 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 99.56 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 99.56 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.55 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.55 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.54 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.54 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.53 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.53 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.53 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.52 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.52 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.52 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.52 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.52 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.52 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.52 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.51 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.51 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.51 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.51 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.5 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.5 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.5 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.5 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.49 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.49 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.49 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.49 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.49 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.49 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.49 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.49 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.49 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.49 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.48 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.48 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.48 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.48 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.48 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.47 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.47 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.47 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.47 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.47 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.47 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.47 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.47 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.47 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.47 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.46 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.46 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.46 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.46 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.46 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.46 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.46 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.46 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.46 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.46 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.46 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.46 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.45 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.45 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.45 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.45 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.45 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.45 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.45 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.45 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 99.44 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.44 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.44 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.44 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.44 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.44 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.44 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.43 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.43 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.43 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.43 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.43 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.43 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.43 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.42 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.42 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.42 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 99.42 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.42 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.42 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.42 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 99.42 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.42 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.42 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 99.42 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.42 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 99.42 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.42 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.42 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 99.42 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.41 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.41 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.41 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.41 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.41 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.41 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.41 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.41 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.41 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.41 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.41 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 99.41 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.41 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.41 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.4 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.4 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.4 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.4 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.4 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.4 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.4 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.4 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.4 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.4 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.39 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.39 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 99.39 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.39 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.39 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.39 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.39 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.38 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.38 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.38 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.38 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 99.38 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.38 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.38 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.38 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.38 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.37 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.37 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.37 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.37 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.36 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.36 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.36 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.36 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.36 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.36 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.36 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.36 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.36 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.35 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.35 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.35 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.35 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.35 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.35 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.35 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.35 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.35 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.35 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.35 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.34 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.34 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.34 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 99.34 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.34 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.34 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.34 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.34 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 99.33 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.33 | |
| PRK09519 | 790 | recA DNA recombination protein RecA; Reviewed | 99.33 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.33 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 99.33 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.33 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.33 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.33 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.33 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 99.33 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.33 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 99.32 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.32 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 99.32 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.32 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 99.32 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 99.32 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.32 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.32 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.32 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.32 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.32 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.32 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.32 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.32 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.32 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.32 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.31 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.31 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.31 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.31 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.31 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.31 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.31 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 99.31 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.31 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.31 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 99.31 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.31 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 99.3 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.3 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.3 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.3 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.3 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.3 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.29 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.29 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 99.29 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.29 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.29 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 99.29 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.29 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.29 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.29 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.29 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.29 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.28 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.28 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.28 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.28 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 99.28 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.28 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 99.28 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 99.28 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 99.28 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.28 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.27 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.27 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.27 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.27 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.27 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.27 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.26 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.26 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 99.26 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.26 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.26 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.26 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.26 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.25 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.25 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.24 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.24 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.24 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.24 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.24 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.24 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.24 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.24 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.24 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.24 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.23 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.23 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.23 | |
| KOG2373 | 514 | consensus Predicted mitochondrial DNA helicase twi | 99.23 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.22 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.22 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.22 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.22 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.22 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.21 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.21 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.21 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.21 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.21 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.21 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.2 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.2 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.2 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.2 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.19 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.19 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.19 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.19 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.18 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 99.18 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.18 | |
| KOG1433 | 326 | consensus DNA repair protein RAD51/RHP55 [Replicat | 99.17 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.17 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.17 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.17 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.16 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.16 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 99.16 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.16 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.16 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.15 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.15 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.15 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.13 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.13 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.12 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.11 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.11 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.1 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.1 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.1 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.09 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.09 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.09 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.08 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.08 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.07 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.07 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.07 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.07 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.06 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.06 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 99.06 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.05 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.05 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.05 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 99.04 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.04 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.02 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.01 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.01 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.01 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 98.99 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 98.98 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 98.97 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 98.96 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 98.96 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 98.96 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 98.94 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 98.92 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 98.92 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 98.92 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 98.91 | |
| COG3598 | 402 | RepA RecA-family ATPase [DNA replication, recombin | 98.9 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 98.89 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 98.88 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 98.87 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 98.87 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 98.86 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 98.84 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 98.84 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 98.83 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 98.83 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 98.8 | |
| cd00544 | 169 | CobU Adenosylcobinamide kinase / adenosylcobinamid | 98.8 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 98.79 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 98.79 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 98.79 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 98.78 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 98.78 | |
| PF13479 | 213 | AAA_24: AAA domain | 98.77 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 98.76 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 98.72 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 98.71 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 98.69 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 98.68 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.68 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 98.68 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 98.63 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 98.61 | |
| PRK05800 | 170 | cobU adenosylcobinamide kinase/adenosylcobinamide- | 98.6 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 98.57 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 98.57 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 98.55 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 98.54 | |
| PF07088 | 484 | GvpD: GvpD gas vesicle protein; InterPro: IPR00978 | 98.54 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 98.52 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 98.5 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 98.49 | |
| TIGR01618 | 220 | phage_P_loop phage nucleotide-binding protein. Thi | 98.45 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 98.36 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 98.36 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 98.29 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.26 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 98.25 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 98.24 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 98.19 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 98.18 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 98.18 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 98.17 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 98.17 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 98.16 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 98.15 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.15 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 98.13 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 98.11 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 98.11 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.11 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.1 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 98.08 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 98.08 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.07 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 98.07 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 98.05 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 98.05 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 98.05 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 98.05 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 98.04 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.04 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 98.03 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 98.03 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.01 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.0 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 97.99 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 97.99 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 97.98 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 97.98 | |
| PF05729 | 166 | NACHT: NACHT domain | 97.98 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 97.98 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 97.97 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 97.97 | |
| PRK08181 | 269 | transposase; Validated | 97.96 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 97.95 |
| >PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-66 Score=482.59 Aligned_cols=320 Identities=61% Similarity=0.958 Sum_probs=290.7
Q ss_pred HHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 017792 6 LALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ 85 (366)
Q Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~ 85 (366)
++|+.++++|+|+||++++|+++++......+.+|||++.||.+||.||+|+|++++|+||+|||||||++++++.+++.
T Consensus 1 ~~l~~~~~~i~k~~g~~~i~~lg~~~~~~~~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~ 80 (322)
T PF00154_consen 1 KALEKALKQIEKKFGKGSIMRLGDNAESQNIEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQ 80 (322)
T ss_dssp HHHHHHHHHHHHHHTTTSSEETTS-C-GCSS-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHhCCCceeecCCcccccccceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcc
Confidence 58999999999999999999999864467899999999999999998999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHH
Q 017792 86 GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAM 165 (366)
Q Consensus 86 gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~ 165 (366)
++.|+|||.|+.+++.+++++|++++++++.+|.+.++.++.++.+++++.+++|||||+.++.|..++++++++.+.+.
T Consensus 81 g~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al~p~~E~e~~~~~~~~g~ 160 (322)
T PF00154_consen 81 GGICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAALVPKAELEGEIGDQQVGL 160 (322)
T ss_dssp T-EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-B-HHHHTTSTSSTSSSH
T ss_pred cceeEEecCcccchhhHHHhcCccccceEEecCCcHHHHHHHHHHHhhcccccEEEEecCcccCCHHHHhhccccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEE
Q 017792 166 QARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAV 245 (366)
Q Consensus 166 ~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l 245 (366)
+||+|+++||++...+.+.++++|||||.|++++. +|++| ++++||++|.|+|++||.+++.+.++++++..|+++.+
T Consensus 161 ~Ar~ms~~lr~lt~~l~~~~~~~i~INQ~R~~ig~-~~g~~-~~t~GG~alkfyas~rl~i~k~~~ik~~~~~iG~~~~v 238 (322)
T PF00154_consen 161 QARLMSQALRKLTPLLSKSNTTLIFINQVRDKIGV-MFGNP-ETTPGGRALKFYASVRLEIRKKEQIKEGDEVIGNKIKV 238 (322)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-EEEEEEEESSSSSS-SSSSS-SCCTSHHHHHHHCSEEEEEEEEEEEEETTCECEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHhhceEEEEeehHHHHHhh-ccCCC-cCCCCCchhhhhhhhHHhhhcccccccCCcccccEEEE
Confidence 99999999999999999999999999999999986 36666 78899999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHHHHH
Q 017792 246 KIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVIKLR 324 (366)
Q Consensus 246 ~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l~~~~~ 324 (366)
+++|||+++|++.+++.|.|+.||+...+++++|.+.|+|.++|+||+|+++++ ||++.+.+||++||+++++|+.++|
T Consensus 239 kv~KnKva~P~k~a~~~i~y~~Gid~~~~lldla~~~giI~ksG~wy~y~~e~~gqG~~~~~~~L~en~e~~~ei~~~ir 318 (322)
T PF00154_consen 239 KVVKNKVAPPFKKAEFDIYYGRGIDRESELLDLAVELGIIKKSGSWYSYNGEKIGQGRENAKKYLKENPELAEEIEQKIR 318 (322)
T ss_dssp EEEEESSS-TTEEEEEEEETTTEE-HHHHHHHHHHHTTSSEEETTEEEETTEEEEESHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred EEEEcccCCCcceeEEEEecCCeECccchHHHHHHHcChhhccCceEEECCcEecccHHHHHHHHHHCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHh
Q 017792 325 EKL 327 (366)
Q Consensus 325 ~~~ 327 (366)
+++
T Consensus 319 ~~~ 321 (322)
T PF00154_consen 319 EKL 321 (322)
T ss_dssp HHT
T ss_pred Hhc
Confidence 986
|
In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A .... |
| >cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=476.77 Aligned_cols=323 Identities=60% Similarity=0.956 Sum_probs=306.6
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 3 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+|.++|+.|+++|+++||++++|++++. ....++++|||++.||.+||+||+|+|++++|+||+||||||||++++..+
T Consensus 1 ~~~~~~~~~~~~i~~~~g~~~~~~~~~~-~~~~~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~ 79 (325)
T cd00983 1 EKQKALELALKQIEKKFGKGSIMKLGDD-AVQDVEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEA 79 (325)
T ss_pred CchHHHHHHHHHHHHHhCCcceEECccc-cccCCceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4778999999999999999999999985 567899999999999999988999999999999999999999999999999
Q ss_pred hhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhh
Q 017792 83 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 83 ~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
+..++.|+|+|+|+.+++.+++++|++.+++.+.+|.+.++.++.+..++++..++++||||+++++++.++++++++.+
T Consensus 80 ~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~lIVIDSvaal~~~~E~~~~~~~~~ 159 (325)
T cd00983 80 QKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSH 159 (325)
T ss_pred HHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCCEEEEcchHhhcccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889998888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccE
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 242 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~ 242 (366)
.+.++|.|.++|++|...++++++++|+|||++..++. +|++| ++++||++++|+++.|+.+++...++++++..|++
T Consensus 160 ~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQvr~~ig~-~~g~~-e~~~GG~~L~~~ss~rl~lrk~~~~k~~~~~~G~~ 237 (325)
T cd00983 160 VGLQARLMSQALRKLTGSINKSNTTVIFINQLREKIGV-MFGNP-ETTTGGNALKFYSSVRLDIRRIETIKDGDEVIGNR 237 (325)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc-ccCCC-ccCCCchHHhhhcceEEEEEeecccccCCcccccE
Confidence 88899999999999999999999999999999998775 25555 88999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHH
Q 017792 243 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVI 321 (366)
Q Consensus 243 ~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l~~ 321 (366)
++++++|||.+||++.++|.|.|+.||++.++++++|.+.|+|.++|+||+|.++++ ||++.+..||++||+++++|+.
T Consensus 238 ~~~~v~Knk~~~p~~~~~~~i~~~~Gi~~~~~~~~~a~~~g~i~k~g~w~~~~~~~~~qg~~~~~~~l~~~~~~~~~~~~ 317 (325)
T cd00983 238 TKVKVVKNKVAPPFKTAEFDILFGEGISREGEIIDLAVELGIIKKSGSWYSYGDEKLGQGRENAKEYLKENPELADEIEK 317 (325)
T ss_pred EEEEEEecccCCCCCceEEEEEcCcccchhhhHHHHHHhCCcEEcCCCEEEECCceeccCHHHHHHHHHhCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhc
Q 017792 322 KLREKLV 328 (366)
Q Consensus 322 ~~~~~~~ 328 (366)
++++++.
T Consensus 318 ~~~~~~~ 324 (325)
T cd00983 318 KVREKLG 324 (325)
T ss_pred HHHHHhc
Confidence 9998764
|
RecA couples ATP hydrolysis to DNA strand exchange. |
| >PRK09354 recA recombinase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-64 Score=477.52 Aligned_cols=325 Identities=61% Similarity=0.969 Sum_probs=308.2
Q ss_pred chHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 2 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
.+|.++|+.|+++|+++||++++|+|++. .....+++|||++.||.+||+||+|+|++++|+||+||||||||++++..
T Consensus 5 ~~~~~~~~~~~~~i~~~~g~~~~~~~~~~-~~~~~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~ 83 (349)
T PRK09354 5 EEKQKALEAALKQIEKQFGKGSIMRLGDD-AAMDVEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAE 83 (349)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCceEcccc-cccCCceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999999999985 44578999999999999998899999999999999999999999999999
Q ss_pred HhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchh
Q 017792 82 AQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDA 161 (366)
Q Consensus 82 ~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~ 161 (366)
.+..++.|+|||+|+.+++.+++++|++++++.+.+|.+.++.++.+..++++..+++|||||+++++++.++++++++.
T Consensus 84 ~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~lIVIDSvaaL~~~~E~eg~~gd~ 163 (349)
T PRK09354 84 AQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEMGDS 163 (349)
T ss_pred HHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCCEEEEeChhhhcchhhhcCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888999988888
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCcccccc
Q 017792 162 HMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGS 241 (366)
Q Consensus 162 ~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~ 241 (366)
+.+.++|.+.++|++|...++++++|+|+|||++.+++. .|++| +++.||+++.|++..|+.++|...++.++...|+
T Consensus 164 ~~~~qar~ms~~Lr~L~~~l~k~~itvI~tNQvr~~ig~-~~g~p-e~~~GG~aL~~~ss~rl~lrr~~~iK~~~~~~G~ 241 (349)
T PRK09354 164 HVGLQARLMSQALRKLTGNISKSNTTVIFINQIREKIGV-MFGNP-ETTTGGNALKFYASVRLDIRRIGTIKDGDEVIGN 241 (349)
T ss_pred chhHHHHHHHHHHHHHHHHHHHcCcEEEEEEeeeecccc-ccCCC-CcCCCchhhHhhheeeeEEecccccccCCceecc
Confidence 888999999999999999999999999999999998774 25566 7899999999999999999999889999999999
Q ss_pred EEEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHH
Q 017792 242 QIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELV 320 (366)
Q Consensus 242 ~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l~ 320 (366)
+++++++|||.+||++.+.|.|.|+.||++.++++++|.+.|+|.++|+||+|.++++ ||++.+..||++||+++++|+
T Consensus 242 ~~r~~vvKnk~~~p~~~a~~~i~~~~Gi~~~~~~~d~a~~~g~i~k~g~w~~~~~~~~~qg~~~~~~~l~~~~~~~~~~~ 321 (349)
T PRK09354 242 RTKVKVVKNKVAPPFKQAEFDIMYGEGISREGELIDLGVELGIIEKSGAWYSYNGEKIGQGRENAKQYLKENPELADEIE 321 (349)
T ss_pred eEEEEEEecccCCCCCceEEEEEcCCccchhhhHHHHHHhCCcEEcccCEEEECCceecCcHHHHHHHHHhCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHhcc
Q 017792 321 IKLREKLVV 329 (366)
Q Consensus 321 ~~~~~~~~~ 329 (366)
.++++++..
T Consensus 322 ~~~~~~~~~ 330 (349)
T PRK09354 322 KKIREKLGL 330 (349)
T ss_pred HHHHHHhcC
Confidence 999999865
|
|
| >TIGR02012 tigrfam_recA protein RecA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-63 Score=467.55 Aligned_cols=320 Identities=60% Similarity=0.957 Sum_probs=302.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 3 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+|.++|+.|+++|+++||++++|++++. ....++++|||++.||.+||+||+|+|++++|+|||||||||||++++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~ 79 (321)
T TIGR02012 1 EKQKALEAALAQIEKQFGKGSIMRLGEK-SVMDVETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEA 79 (321)
T ss_pred ChHHHHHHHHHHHHHHcCcceeEECccc-ccccCceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3678999999999999999999999963 456789999999999999988999999999999999999999999999999
Q ss_pred hhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhh
Q 017792 83 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 83 ~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
++.++.|+|||+|+.+++.+++++|++++++.+.++.+.++.++.+..++++..++++||||++++.+..++++++|+.+
T Consensus 80 ~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~ 159 (321)
T TIGR02012 80 QKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSH 159 (321)
T ss_pred HHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcEEEEcchhhhccchhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999888999999999999998889999888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccE
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 242 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~ 242 (366)
.+.++|.|.++|++|...++++|+|+|+|||++..++. +|++| +++.||+++.|++..++.+++...++.++...|++
T Consensus 160 ~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQvr~~~g~-~~~~~-e~~~GG~aL~~~ss~r~~lrr~~~iK~~~~~~g~~ 237 (321)
T TIGR02012 160 VGLQARLMSQALRKLTGALSKSNTTAIFINQIREKIGV-MFGNP-ETTTGGRALKFYASVRLDIRRIGQVKQGEEVVGNR 237 (321)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeccCc-ccCCC-ccCcCccHHHHHHhHhHhhhhhhccccCCceeccE
Confidence 88899999999999999999999999999999998775 25555 78999999999999999999998899999999999
Q ss_pred EEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHH
Q 017792 243 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVI 321 (366)
Q Consensus 243 ~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l~~ 321 (366)
++++++|||++||++.++|.|.|+.||++.++++++|.+.|+|.++|+||+|.++++ ||++.+.+||++||+++++|+.
T Consensus 238 ~~~~v~Knk~~~p~~~~~~~i~~~~Gi~~~~~~~~~a~~~g~i~k~g~w~~~~~~~~~qg~~~~~~~l~~~~~~~~~~~~ 317 (321)
T TIGR02012 238 TKVKVVKNKVAPPFKEAEFDILYGEGISKLGEIIDLAVELDIIKKAGSWYSYGDEKLGQGRENAKAYLKENPELAQEIEK 317 (321)
T ss_pred EEEEEEECCCCCCCCceEEEEEcCCccchhhHHHHHHHhCCcEEcccCEEEECCcEecccHHHHHHHHHhCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHH
Q 017792 322 KLRE 325 (366)
Q Consensus 322 ~~~~ 325 (366)
++|+
T Consensus 318 ~~~~ 321 (321)
T TIGR02012 318 KVRE 321 (321)
T ss_pred HHhC
Confidence 9873
|
This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. |
| >COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=315.35 Aligned_cols=271 Identities=56% Similarity=0.913 Sum_probs=244.0
Q ss_pred chHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 2 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
..+.++++.+..++++.|+++++|.++.......+..||||+..||.+|| ||+|.|.|++|+||+||||||+|+|++..
T Consensus 5 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~TGs~~LD~~LG-GGl~~g~ItEiyG~~gsGKT~lal~~~~~ 83 (279)
T COG0468 5 IDEEKALEAALAQIEKAFGKGSIMALGGDERREDIEAISTGSLALDEALG-GGLPRGRITEIYGPESSGKTTLALQLVAN 83 (279)
T ss_pred chhhhHHHHHHHHHHHhhcccchhhhhHHHHhhccccccccchhHHHHhc-CCcccceEEEEecCCCcchhhHHHHHHHH
Confidence 45778999999999999999999999643345669999999999999999 99999999999999999999999999999
Q ss_pred HhhcCCeEEEEeCCCCCCHHHHhhcccc-cCcceecCCCCHHHHHHHHHHHHhcCC--ceEEEEecccccCCCCccCCcc
Q 017792 82 AQRQGGYCVFIDAEHALDPSLAETIGVK-TENLLLAQPDCGEQALSLVDTLIRSGS--VDVVVVDSVAALVPKGELDGEM 158 (366)
Q Consensus 82 ~~~~gg~vl~id~e~~~~~~~~~~ig~~-~~~~~~~~~~~~e~~l~~~~~~~~~~~--~~lvviDsl~~l~~~~~l~~~~ 158 (366)
+++.++.|+|||+|+.+++.+++.++.. .+++++.++.+.++.+.++..+..... ++++||||++++++..+..
T Consensus 84 aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~~~~--- 160 (279)
T COG0468 84 AQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIE--- 160 (279)
T ss_pred hhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHHhccCCCCEEEEecCcccchhhhcC---
Confidence 9999999999999999999999999999 999999999999999999998887777 9999999999999644443
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccc
Q 017792 159 GDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEET 238 (366)
Q Consensus 159 g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~ 238 (366)
+...+.++|.|++.++.|...+++++++||++||++.+++. +|++| .++.||++++|++..|+.+++...++ ..
T Consensus 161 -d~~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQv~~k~~~-~f~~~-~~~~GG~~L~~~as~rl~l~k~~~~~--~~- 234 (279)
T COG0468 161 -DGHLGLRARLLSKALRKLTRLANKYNTAVIFTNQVRAKIGV-MFGDP-ETTTGGNALKFYASVRLDLRRIESLK--ED- 234 (279)
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHHcCcEEEEECceeeecCc-ccCCc-ccCCCchHHHhhhheEEEEeeccccc--cc-
Confidence 35567889999999999999999999999999999999887 35566 78999999999999999999987666 22
Q ss_pred cccEEEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhc
Q 017792 239 IGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKH 282 (366)
Q Consensus 239 ~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~ 282 (366)
.|.++.++++|||..||++.+.|+|+++.+++..+++++.+...
T Consensus 235 ~g~~r~~~vvk~~~~p~~~~a~f~I~~~~~~~~~~~~~~~~~~~ 278 (279)
T COG0468 235 VGNKRRVKVVKNKVAPPFKEAEFDITYGGGIDREGELIDLGVKQ 278 (279)
T ss_pred cCCeEEEEEEeCCCCCCCceeEEEeecCcccccccchhhhhhcc
Confidence 67788999999999999999999999999999999998877654
|
|
| >PRK09519 recA DNA recombination protein RecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=343.66 Aligned_cols=270 Identities=55% Similarity=0.883 Sum_probs=242.6
Q ss_pred chHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 2 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
++|+++|+.++++|+++||++++|++++. ....+.++|||++.||.+||.||+|+|++++|+|++||||||||++++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~ 83 (790)
T PRK09519 5 PDREKALELAVAQIEKSYGKGSVMRLGDE-ARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN 83 (790)
T ss_pred hHHHHHHHHHHHHHHHHhccchhcccccc-cccCCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36788999999999999999999999974 45678999999999999997689999999999999999999999999999
Q ss_pred HhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchh
Q 017792 82 AQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDA 161 (366)
Q Consensus 82 ~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~ 161 (366)
.+..++.|+|+++|+.+++.+++++|++++++.+.++.+.++++..+..++.+..++++||||+++++++.++++.+++.
T Consensus 84 a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~aL~~r~E~~g~~g~~ 163 (790)
T PRK09519 84 AQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDS 163 (790)
T ss_pred HHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCeEEEEcchhhhcchhhccCCCCcc
Confidence 99999999999999999999999999999999999999999999999998888899999999999999888999888776
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCcccccc
Q 017792 162 HMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGS 241 (366)
Q Consensus 162 ~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~ 241 (366)
+.+.++|.+.++|++|.+.++++|+|+|+|||++..++. +|++| +.+.||++++|+++.||.|+++..++++.+..|+
T Consensus 164 ~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TNQv~~~~g~-~fg~p-~~~~GG~~l~h~ss~Ri~lrk~~~ik~~~~~~G~ 241 (790)
T PRK09519 164 HVGLQARLMSQALRKMTGALNNSGTTAIFINQLRDKIGV-MFGSP-ETTTGGKALKFYASVRMDVRRVETLKDGTNAVGN 241 (790)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceecCCC-cCCCC-CcCCCCcccceeccEEEEeeeccccccCccccce
Confidence 777888988999999999999999999999999998875 36666 8899999999999999999999889988888999
Q ss_pred EEEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHH
Q 017792 242 QIAVKIVKNKLAPPFKTAQFELEFGKGISRESEII 276 (366)
Q Consensus 242 ~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~ 276 (366)
++.++++||+..| ...+.|.+. ...-...++++
T Consensus 242 ~~~~kv~ks~cLp-e~e~v~~i~-tG~~v~i~elv 274 (790)
T PRK09519 242 RTRVKVVKNKCLA-EGTRIFDPV-TGTTHRIEDVV 274 (790)
T ss_pred EEEEEEEECCCCC-CceEEEEec-CCCEEEHHHhh
Confidence 9999999999875 456667776 22244455555
|
|
| >PLN03187 meiotic recombination protein DMC1 homolog; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-32 Score=257.75 Aligned_cols=246 Identities=28% Similarity=0.397 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 5 DLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
+++++.+.+.+...|-++.-+... .....+++||++.||.+|| |||+.|++++|+|+||||||+||++++...+.
T Consensus 78 ~ki~~~a~~~~~~~~~ta~~~~~~----~~~~~~isTG~~~LD~lLg-GGi~~G~ItEI~G~~GsGKTql~lqlav~~ql 152 (344)
T PLN03187 78 DKICEAAEKLLNQGFITGSDALLK----RKSVVRITTGSQALDELLG-GGIETRCITEAFGEFRSGKTQLAHTLCVTTQL 152 (344)
T ss_pred HHHHHHHHHhhcccCCcHHHHHhh----hccCceecCCcHhHHhhcC-CCCCCCeEEEEecCCCCChhHHHHHHHHHHhc
Confidence 345666666666666554433322 2467899999999999999 99999999999999999999999999987753
Q ss_pred c------CCeEEEEeCCCCCCHH----HHhhccccc----CcceecCCCCHHHHHHHHHH---HHhcCCceEEEEecccc
Q 017792 85 Q------GGYCVFIDAEHALDPS----LAETIGVKT----ENLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAA 147 (366)
Q Consensus 85 ~------gg~vl~id~e~~~~~~----~~~~ig~~~----~~~~~~~~~~~e~~l~~~~~---~~~~~~~~lvviDsl~~ 147 (366)
. ++.|+|||+|+++.+. +++++|+++ +++.+.++.+.++.+..+.. .+...+++++||||+++
T Consensus 153 p~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSita 232 (344)
T PLN03187 153 PTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIA 232 (344)
T ss_pred chhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 1 3689999999998864 456677765 56788888888887665544 45566799999999999
Q ss_pred cCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccccc-CCCCeeeccCCceeeeeceEEEEE
Q 017792 148 LVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFG-FGGPTEVTCGGNALKFYASVRLNI 226 (366)
Q Consensus 148 l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~-~~~~~~~~~gG~~l~~~ad~~i~l 226 (366)
++ +.++.+. ++. ....+.+.+.++.|.+.++++|++||++||++.+.+... +++| ..++||..|.|.++.|+.|
T Consensus 233 l~-r~~~~~r-g~l--~~rq~~L~~~~~~L~~lA~~~~vavvvTNqv~~~~~~~~~~~~~-~~pagG~~~~h~~~~Rl~l 307 (344)
T PLN03187 233 LF-RVDFTGR-GEL--AERQQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGGMFISDP-KKPAGGHVLAHAATIRLML 307 (344)
T ss_pred hh-hccccCc-cch--HHHHHHHHHHHHHHHHHHHHcCCEEEEEecEEEcCCcccccCCC-CCCCCchhhheeeeEEEEE
Confidence 98 5555442 211 123344667777788888899999999999998766432 4444 5899999999999999999
Q ss_pred EEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCCCCc
Q 017792 227 KRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISR 271 (366)
Q Consensus 227 ~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~ 271 (366)
++.. +..+.++++|++..|+. .+.|.|+ +.||..
T Consensus 308 ~k~~---------~~~R~~~v~ksp~lp~~-~~~f~It-~~GI~d 341 (344)
T PLN03187 308 RKGK---------GEQRVCKVFDAPNLPEA-EAEFQIT-SGGIMD 341 (344)
T ss_pred EcCC---------CCeEEEEEEECCCCCCc-eEEEEEe-CCCccC
Confidence 9753 23347999999986654 5789999 889864
|
|
| >TIGR02238 recomb_DMC1 meiotic recombinase Dmc1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=256.50 Aligned_cols=244 Identities=26% Similarity=0.409 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-
Q 017792 6 LALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR- 84 (366)
Q Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~- 84 (366)
++++.+.+.+...|.++.-+. + ......+++||++.||.+|| ||+|+|++++|+|+||||||+||++++...+.
T Consensus 49 ~i~~~~~~~~~~~~~ta~~~~--~--~~~~~~~isTG~~~LD~lLg-GGi~~G~iteI~G~~GsGKTql~lqla~~~~~~ 123 (313)
T TIGR02238 49 KIKEAASKIINPGFITAFEIS--Q--KRKKVLKITTGSQALDGILG-GGIESMSITEVFGEFRCGKTQLSHTLCVTAQLP 123 (313)
T ss_pred HHHHHHHhhhcccCccHHHHH--H--hhccCceeCCCCHHHHHHhC-CCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcc
Confidence 445555555555555443222 1 23567899999999999999 99999999999999999999999999976653
Q ss_pred -----cCCeEEEEeCCCCCCHH----HHhhccccc----CcceecCCCCHHHHHHHHHH---HHhcCCceEEEEeccccc
Q 017792 85 -----QGGYCVFIDAEHALDPS----LAETIGVKT----ENLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAAL 148 (366)
Q Consensus 85 -----~gg~vl~id~e~~~~~~----~~~~ig~~~----~~~~~~~~~~~e~~l~~~~~---~~~~~~~~lvviDsl~~l 148 (366)
.++.|+|||+|+++++. +++++|+++ +++.+.++.+.++.++.+.. .+...+++++||||++++
T Consensus 124 ~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal 203 (313)
T TIGR02238 124 REMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMAL 203 (313)
T ss_pred hhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcchHh
Confidence 25689999999998754 566778765 46778888888887766554 345568999999999999
Q ss_pred CCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccccc-C-CCCeeeccCCceeeeeceEEEEE
Q 017792 149 VPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFG-F-GGPTEVTCGGNALKFYASVRLNI 226 (366)
Q Consensus 149 ~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~-~-~~~~~~~~gG~~l~~~ad~~i~l 226 (366)
+ +.++.+. ++. ..+.+.+.+.+..|.+.+++++++||+|||++.+.+..+ | ++| ..|+||+.|+|+++.||.|
T Consensus 204 ~-r~~~~~~-g~~--~~r~~~l~~~~~~L~~la~~~~vavvitNqv~~~~~~~~~~~~~~-~~p~gG~~~~h~~~~Rl~l 278 (313)
T TIGR02238 204 F-RVDFSGR-GEL--SERQQKLAQMLSRLNKISEEFNVAVFVTNQVQADPGATMTFIADP-KKPIGGHVLAHASTTRILL 278 (313)
T ss_pred h-hhhccCc-cch--HHHHHHHHHHHHHHHHHHHHcCcEEEEECceEecCCcccccCCCC-ccCcchhhhhhheeEEEEE
Confidence 8 4555432 221 122234566677777777899999999999999876432 3 455 6799999999999999999
Q ss_pred EEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCCCC
Q 017792 227 KRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGIS 270 (366)
Q Consensus 227 ~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~ 270 (366)
++.+ +.++.++++|++..|+ ..+.|.|. +.||.
T Consensus 279 ~k~~---------~~~R~~~~~~sp~~p~-~~~~f~i~-~~Gi~ 311 (313)
T TIGR02238 279 RKGR---------GEERVAKLYDSPDMPE-AEASFQIT-EGGIA 311 (313)
T ss_pred EecC---------CCeEEEEEeeCCCCCC-eEEEEEEe-CCccc
Confidence 9753 2234799999998776 46889998 88875
|
This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis. |
| >PLN03186 DNA repair protein RAD51 homolog; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-31 Score=251.00 Aligned_cols=222 Identities=27% Similarity=0.451 Sum_probs=175.1
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEeCCCCCCHH----HH
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDPS----LA 103 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~------~gg~vl~id~e~~~~~~----~~ 103 (366)
....+++||++.||.+|+ ||+++|++++|+|+||+|||+||++++..++. .++.|+|||+|+++.+. ++
T Consensus 100 ~~~~~i~tG~~~LD~lL~-GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia 178 (342)
T PLN03186 100 QEIIQITTGSRELDKILE-GGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIA 178 (342)
T ss_pred cCcceeCCCCHHHHHhhc-CCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHH
Confidence 457899999999999999 99999999999999999999999999977653 23589999999998854 45
Q ss_pred hhccccc----CcceecCCCCHHHHHHHHHH---HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHH
Q 017792 104 ETIGVKT----ENLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 176 (366)
Q Consensus 104 ~~ig~~~----~~~~~~~~~~~e~~l~~~~~---~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~ 176 (366)
+++++++ +++.+....+.+++...+.. .+...+++++||||+++++ +.++.+. ++.. .+.+.+.+.++.
T Consensus 179 ~~~~~~~~~~l~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alf-r~~~~~~-g~l~--~r~~~L~~~l~~ 254 (342)
T PLN03186 179 ERFGLNGADVLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSATALY-RTEFSGR-GELS--ARQMHLGKFLRS 254 (342)
T ss_pred HHcCCChhhhccceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHH-HHHhcCC-ccHH--HHHHHHHHHHHH
Confidence 6667765 56777777788777665543 3556789999999999998 4544432 2211 222346677777
Q ss_pred HHHHhhhcCcEEEEEecCCccccccc-CCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCC
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFG-FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP 255 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~-~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~ 255 (366)
|.+.++++|++||++||++..++..+ +++|...|+||..|+|+++.||.|+++. +..+.+++.|+++.|+
T Consensus 255 L~~lA~~~~vaVviTNqv~~~~~~~~~~~~~~~~P~gG~~~~h~~~tRl~L~k~~---------~~~R~~~v~ksp~~p~ 325 (342)
T PLN03186 255 LQRLADEFGVAVVITNQVVAQVDGSAFFAGPQLKPIGGNIMAHASTTRLALRKGR---------GENRICKVISSPCLPE 325 (342)
T ss_pred HHHHHHHcCCEEEEEcCEEEccCCccccCCCccccchhHHHHhhccEEEEEEecC---------CCeEEEEEEECCCCCC
Confidence 77777889999999999988776532 6788678999999999999999999753 2334799999999887
Q ss_pred CCeeEEEEEeCCCCCc
Q 017792 256 FKTAQFELEFGKGISR 271 (366)
Q Consensus 256 ~~~~~~~i~~~~Gi~~ 271 (366)
.. +.|.|. +.||..
T Consensus 326 ~e-~~F~I~-~~Gi~~ 339 (342)
T PLN03186 326 AE-ARFSIS-SEGVTD 339 (342)
T ss_pred eE-EEEEEE-CCceec
Confidence 54 899999 888864
|
|
| >PTZ00035 Rad51 protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=249.12 Aligned_cols=222 Identities=26% Similarity=0.434 Sum_probs=174.2
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEeCCCCCCHH----HH
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDPS----LA 103 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~------~gg~vl~id~e~~~~~~----~~ 103 (366)
....+++||++.||.+|+ ||+++|++++|+|+|||||||||++++...+. .++.|+||++|+.+.+. ++
T Consensus 95 ~~~~~isTG~~~LD~lLg-GGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia 173 (337)
T PTZ00035 95 KNIIRITTGSTQLDKLLG-GGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIA 173 (337)
T ss_pred ccCccccCCcHHHHHHhC-CCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHH
Confidence 457899999999999999 99999999999999999999999999988773 46789999999988753 45
Q ss_pred hhccccc----CcceecCCCCHHHHHHHHHH---HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHH
Q 017792 104 ETIGVKT----ENLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 176 (366)
Q Consensus 104 ~~ig~~~----~~~~~~~~~~~e~~l~~~~~---~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~ 176 (366)
+++++++ +++.+.+..+.++.++.+.. .+....++++||||+++++ +.++.+. ++ ...+.+.+.+.++.
T Consensus 174 ~~~g~~~~~~l~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~-r~~~~~~-~~--~~~r~~~l~~~~~~ 249 (337)
T PTZ00035 174 ERFGLDPEDVLDNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATALF-RVDYSGR-GE--LAERQQHLGKFLRA 249 (337)
T ss_pred HHhCCChHhHhhceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcHHhh-hhhccCc-cc--HHHHHHHHHHHHHH
Confidence 5667654 57778888888887776543 3445689999999999988 4555432 11 11233456677777
Q ss_pred HHHHhhhcCcEEEEEecCCccccccc-CCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCC
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFG-FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP 255 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~-~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~ 255 (366)
|.+.++++|++||+|||++...+..+ |.+....++||+.|.|+++.||.|++.. +..+.++++|++..|+
T Consensus 250 L~~la~~~~vavvvtNqv~~~~~~~~~~~~~~~~p~gG~~~~h~~~~Rl~l~k~~---------~~~R~~~i~ksp~~p~ 320 (337)
T PTZ00035 250 LQKLADEFNVAVVITNQVMADVDGASMFVADPKKPIGGHIIAHASTTRLSLRKGR---------GEQRICKIYDSPNLPE 320 (337)
T ss_pred HHHHHHHcCcEEEEecceEEecCCccccCCCCccCCchHHHHhheeEEEEEEecC---------CCeeEEEEEECCCCCC
Confidence 77777889999999999998865422 4333478999999999999999999753 2234799999998876
Q ss_pred CCeeEEEEEeCCCCCc
Q 017792 256 FKTAQFELEFGKGISR 271 (366)
Q Consensus 256 ~~~~~~~i~~~~Gi~~ 271 (366)
. .+.|.|+ +.||..
T Consensus 321 ~-~~~f~It-~~Gi~~ 334 (337)
T PTZ00035 321 S-EAVFAIS-EGGIID 334 (337)
T ss_pred e-eEEEEEe-CCcccc
Confidence 5 4789999 889864
|
|
| >PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=238.02 Aligned_cols=221 Identities=31% Similarity=0.502 Sum_probs=165.3
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCeEEEEeCCCCCCHHHH----h
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDPSLA----E 104 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~------gg~vl~id~e~~~~~~~~----~ 104 (366)
...+|+||++.||.+|+ ||++.|.+++|+|++|||||+||++++...+.. ++.|+|||+|..+...+. +
T Consensus 16 ~~~~i~Tg~~~lD~~L~-GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~ 94 (256)
T PF08423_consen 16 RWSRISTGCKSLDELLG-GGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAE 94 (256)
T ss_dssp TS-EE--SSHHHHHHTT-SSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHH
T ss_pred cCCeeCCCCHHHHHhhC-CCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhh
Confidence 56789999999999999 999999999999999999999999999887632 568999999999986543 3
Q ss_pred hcccc----cCcceecCCCCHHHHHHHHHH---HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHH
Q 017792 105 TIGVK----TENLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 177 (366)
Q Consensus 105 ~ig~~----~~~~~~~~~~~~e~~l~~~~~---~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L 177 (366)
+.+.+ .+++.+.+..+.+++...+.. .+...++++|||||+++++ +.++.+. ++ ...+.+.+...+..|
T Consensus 95 ~~~~~~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalf-r~e~~~~-~~--~~~R~~~L~~~~~~L 170 (256)
T PF08423_consen 95 RFGLDPEEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAALF-RSEFSGR-GD--LAERQRMLARLARIL 170 (256)
T ss_dssp HTTS-HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHH-HHHSGST-TT--HHHHHHHHHHHHHHH
T ss_pred ccccccchhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHHH-HHHHccc-hh--hHHHHHHHHHHHHHH
Confidence 33433 357778888888887766544 3456689999999999998 5565432 11 123445566666666
Q ss_pred HHHhhhcCcEEEEEecCCccccccc-CCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCC
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFG-FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPF 256 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~-~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~ 256 (366)
...+.+++++||++||++...+..+ +.+....|++|..|.|.++.||.|++.+ +.++.+.+.|++..|+
T Consensus 171 ~~lA~~~~iaVvvTNqv~~~~~~~~~~~~~~~~PalG~~w~h~~~~Rl~l~k~~---------~~~R~~~i~ksp~~p~- 240 (256)
T PF08423_consen 171 KRLARKYNIAVVVTNQVTTKIDSNSLFDGDRLKPALGHSWSHAVTTRLFLSKGR---------GSERVATIVKSPSLPE- 240 (256)
T ss_dssp HHHHHHTT-EEEEEEEECSSTT----SSTTSEEETTHHHHHHHSSEEEEEEECS---------TTEEEEEEEECSSSSS-
T ss_pred HHHHHhCCceEEeeceeeecCCcccccccccceecCcchhhhhccEEEEEEeCC---------CCeEEEEEeECCCCCC-
Confidence 6666789999999999998877643 4444578999999999999999998742 2345799999998765
Q ss_pred CeeEEEEEeCCCCCc
Q 017792 257 KTAQFELEFGKGISR 271 (366)
Q Consensus 257 ~~~~~~i~~~~Gi~~ 271 (366)
..+.|.|+ +.||..
T Consensus 241 ~~~~f~It-~~Gi~d 254 (256)
T PF08423_consen 241 GSASFQIT-EDGIRD 254 (256)
T ss_dssp EEEEEEEE-TTEEEE
T ss_pred ceEEEEEe-CCCccC
Confidence 46889998 888754
|
It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D .... |
| >TIGR02239 recomb_RAD51 DNA repair protein RAD51 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=239.34 Aligned_cols=222 Identities=29% Similarity=0.484 Sum_probs=170.0
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh---cC---CeEEEEeCCCCCCHH----HH
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR---QG---GYCVFIDAEHALDPS----LA 103 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~---~g---g~vl~id~e~~~~~~----~~ 103 (366)
....+++||++.||.+|+ ||+++|++++|+|+||+||||||++++..++. .+ +.|+|+++|+.+.+. ++
T Consensus 73 ~~~~~~~tg~~~lD~ll~-gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia 151 (316)
T TIGR02239 73 QEVIQLTTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIA 151 (316)
T ss_pred cccceeCCCCHHHHHHhc-CCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999 99999999999999999999999999986542 22 479999999987753 45
Q ss_pred hhccccc----CcceecCCCCHHHHHHHHHH---HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHH
Q 017792 104 ETIGVKT----ENLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 176 (366)
Q Consensus 104 ~~ig~~~----~~~~~~~~~~~e~~l~~~~~---~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~ 176 (366)
+++++++ +++.+....+.++++..+.. .+...+++++||||+++++ +.++.+. ++. ..+.+.+.+.+..
T Consensus 152 ~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~-r~~~~~~-~~~--~~rq~~l~~~~~~ 227 (316)
T TIGR02239 152 ERYGLNPEDVLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATALY-RTDFSGR-GEL--SARQMHLARFLRS 227 (316)
T ss_pred HHcCCChHHhhccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcHHHh-hhhcCCc-chH--HHHHHHHHHHHHH
Confidence 5667665 34566666677776555443 3556689999999999997 4454432 221 1222345667777
Q ss_pred HHHHhhhcCcEEEEEecCCccccccc--CCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCC
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFG--FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAP 254 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~--~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~ 254 (366)
|.+.+++++++||++||++...+..+ |.+....|+||..|+|+++.||.|++.+ +..+.++++||++.|
T Consensus 228 L~~la~~~~vavv~tNqv~~~~~~~~~~~~g~~~~p~gG~~~~h~~~~ri~l~k~~---------~~~R~~~v~ksp~~p 298 (316)
T TIGR02239 228 LQRLADEFGVAVVITNQVVAQVDGAGSMFAGDPKKPIGGNIMAHASTTRLSLRKGR---------GEQRICKIYDSPCLP 298 (316)
T ss_pred HHHHHHHhCCEEEEECceEEecCCccccccCCCCcCCchHHHHhhccEEEEEEecC---------CCeEEEEEEECCCCC
Confidence 77777889999999999998776431 4344478999999999999999999753 233479999999988
Q ss_pred CCCeeEEEEEeCCCCCc
Q 017792 255 PFKTAQFELEFGKGISR 271 (366)
Q Consensus 255 ~~~~~~~~i~~~~Gi~~ 271 (366)
+.. +.|.|+ +.||..
T Consensus 299 ~~~-~~f~i~-~~Gi~~ 313 (316)
T TIGR02239 299 ESE-AMFAIY-EDGIGD 313 (316)
T ss_pred CeE-EEEEEe-CCceec
Confidence 854 899998 888864
|
This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012). |
| >COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=236.93 Aligned_cols=226 Identities=27% Similarity=0.425 Sum_probs=193.2
Q ss_pred CCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccc
Q 017792 32 TPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVK 109 (366)
Q Consensus 32 ~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~ 109 (366)
......+++||+.+||++|| ||+-+|++++|.|.||.|||||++|++..+...+ +|+|+++|++..+ .+++++|..
T Consensus 68 ~~~~~~Ri~tg~~EldRVLG-GG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~ 145 (456)
T COG1066 68 ELEEEPRISTGIEELDRVLG-GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLP 145 (456)
T ss_pred eeeecccccCChHHHHhhhc-CCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCCC
Confidence 45668899999999999999 9999999999999999999999999999999877 8999999999885 678899998
Q ss_pred cCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEE
Q 017792 110 TENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILI 189 (366)
Q Consensus 110 ~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI 189 (366)
.+++++......++++..+.. .+++++||||++.++ ..++++.+|.. .|.|..+..|.+++ +..|++++
T Consensus 146 ~~~l~l~aEt~~e~I~~~l~~----~~p~lvVIDSIQT~~-s~~~~SapGsV---sQVRe~t~~L~~~A---K~~~i~~f 214 (456)
T COG1066 146 TNNLYLLAETNLEDIIAELEQ----EKPDLVVIDSIQTLY-SEEITSAPGSV---SQVREVAAELMRLA---KTKNIAIF 214 (456)
T ss_pred ccceEEehhcCHHHHHHHHHh----cCCCEEEEeccceee-cccccCCCCcH---HHHHHHHHHHHHHH---HHcCCeEE
Confidence 899999988888888887765 589999999999999 67888888875 68999998888887 56899999
Q ss_pred EEecCCccccccc-CCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCC
Q 017792 190 FINQVRAKLSTFG-FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKG 268 (366)
Q Consensus 190 ~i~h~~~~~~~~~-~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~G 268 (366)
++.|++++ + .++| +.++|..|.++.+. |+.....| .++.+||||++......|.+. +.|
T Consensus 215 iVGHVTKe----G~IAGP-------rvLEHmVDtVlyFE-------Gd~~~~~R-iLR~vKNRFG~t~EiGvFeM~-~~G 274 (456)
T COG1066 215 IVGHVTKE----GAIAGP-------RVLEHMVDTVLYFE-------GDRHSRYR-ILRSVKNRFGATNELGVFEMT-ENG 274 (456)
T ss_pred EEEEEccc----ccccCc-------hheeeeeeEEEEEe-------ccCCCcee-eeehhcccCCcccceeEEEEe-cCC
Confidence 99999987 3 4444 55999999998775 34334455 799999999999999999999 999
Q ss_pred CCchhhHHHHHHhcCcccccce
Q 017792 269 ISRESEIIDLALKHKFASKAGA 290 (366)
Q Consensus 269 i~~~~~i~~~~~~~~~i~~~g~ 290 (366)
+....++..+-....--...|+
T Consensus 275 L~eV~npS~lFL~er~~~~~GS 296 (456)
T COG1066 275 LREVSNPSALFLSERGEQTPGS 296 (456)
T ss_pred eeEecCcHHhHhhcCCCCCCCc
Confidence 9998888877666554444455
|
|
| >PRK09361 radB DNA repair and recombination protein RadB; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=224.35 Aligned_cols=213 Identities=26% Similarity=0.453 Sum_probs=160.5
Q ss_pred CcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhccc-----ccC
Q 017792 37 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGV-----KTE 111 (366)
Q Consensus 37 ~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~-----~~~ 111 (366)
+++|||+++||.+|+ ||+|+|++++|+|+||+|||+||++++......++.|+|+++| .+...+..++.- ..+
T Consensus 3 ~~i~tGi~~lD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e-~~~~~r~~~~~~~~~~~~~~ 80 (225)
T PRK09361 3 ERLPTGCKMLDELLG-GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE-GLSPERFKQIAGEDFEELLS 80 (225)
T ss_pred ccccCCcHHHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC-CCCHHHHHHHHhhChHhHhh
Confidence 379999999999999 9999999999999999999999999999998888999999999 555433333221 235
Q ss_pred cceecCCCCHHHHHHHHHH---HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEE
Q 017792 112 NLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTIL 188 (366)
Q Consensus 112 ~~~~~~~~~~e~~l~~~~~---~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tV 188 (366)
++.+.++.+.++....+.. ++. .+++++||||+++++. .++.+.... ..+.+.+.+.+..|.+.++++|++|
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~lvVIDsi~al~~-~~~~~~~~~---~~~~~~l~~~l~~L~~~a~~~~v~v 155 (225)
T PRK09361 81 NIIIFEPSSFEEQSEAIRKAEKLAK-ENVGLIVLDSATSLYR-LELEDEEDN---SKLNRELGRQLTHLLKLARKHDLAV 155 (225)
T ss_pred CeEEEeCCCHHHHHHHHHHHHHHHH-hcccEEEEeCcHHHhH-HHhcCCccH---HHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 6777777777665544443 333 6799999999999873 332221111 1234556666777777778999999
Q ss_pred EEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCC
Q 017792 189 IFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKG 268 (366)
Q Consensus 189 I~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~G 268 (366)
|++||.....+. ....+.||..++|+||.+|.|++. . +..+.+.+.|+|..+++..+.|.|+ +.|
T Consensus 156 i~tnq~~~~~~~-----~~~~~~gg~~~~~~~d~ii~l~~~----~-----~~~r~~~i~k~~~~~~~~~~~f~It-~~G 220 (225)
T PRK09361 156 VITNQVYSDIDS-----DGLRPLGGHTLEHWSKTILRLEKF----R-----NGKRRATLEKHRSRPEGESAEFRIT-DRG 220 (225)
T ss_pred EEEccceecCCC-----CcccCCCcchhhhhccEEEEEEEc----c-----CCeEEEEEEECCCCCCCCeEEEEEe-CCc
Confidence 999998876432 124567888999999999999872 1 2233677899998888888999999 888
Q ss_pred CCc
Q 017792 269 ISR 271 (366)
Q Consensus 269 i~~ 271 (366)
|..
T Consensus 221 i~~ 223 (225)
T PRK09361 221 IEI 223 (225)
T ss_pred Eec
Confidence 753
|
|
| >cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=221.66 Aligned_cols=206 Identities=45% Similarity=0.639 Sum_probs=159.7
Q ss_pred ccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC------CeEEEEeCCCCCCHHHHh----hccc
Q 017792 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG------GYCVFIDAEHALDPSLAE----TIGV 108 (366)
Q Consensus 39 i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g------g~vl~id~e~~~~~~~~~----~ig~ 108 (366)
++||++.||.+|+ ||+++|++++|+|+||+|||+|+++++......+ +.|+|+++|..++..+.. ..+.
T Consensus 1 i~tG~~~lD~~l~-GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~ 79 (226)
T cd01393 1 ISTGSKALDELLG-GGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGL 79 (226)
T ss_pred CCCCcHHHHHHhC-CCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhcc
Confidence 6899999999999 9999999999999999999999999999887666 789999999987764433 3333
Q ss_pred c----cCcceecCCCCHHHHHHHHHHHHh---cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHh
Q 017792 109 K----TENLLLAQPDCGEQALSLVDTLIR---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL 181 (366)
Q Consensus 109 ~----~~~~~~~~~~~~e~~l~~~~~~~~---~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l 181 (366)
. .+++.+..+.+.++++..+..+.. ...++++||||++.++. ..+.+. .....+++.+.+.++.|.+.+
T Consensus 80 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~-~~~~~~---~~~~~~~~~l~~~~~~L~~~a 155 (226)
T cd01393 80 DPEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFR-KEFIGR---GMLAERARLLSQALRKLLRLA 155 (226)
T ss_pred chhhhhccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhh-hhhcCC---chHHHHHHHHHHHHHHHHHHH
Confidence 2 467788888888988888777654 67899999999999874 322221 112234455667777777777
Q ss_pred hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCC
Q 017792 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFK 257 (366)
Q Consensus 182 ~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~ 257 (366)
++++++||++||.+..++. +.+....+.+|..|+|.+|.||.|.+... . .+.++.+.++|+++.|+++
T Consensus 156 ~~~~~~vi~tnq~~~~~~~--~~~~~~~p~~G~~~~~~~~~ri~l~~~~~----~--~~~~r~~~~~k~~~~~~~~ 223 (226)
T cd01393 156 DKFNVAVVFTNQVRAKVDV--MFGDPETPAGGNALAHASTTRLDLRKGRG----I--IGERRIAKVVKSPALPEAE 223 (226)
T ss_pred HHhCcEEEEEEEEeeeccc--ccCCCccccCchhhhCcccEEEEEEecCC----c--cCcEEEEEEEeCCCCCCcc
Confidence 8899999999999887653 21223578899999999999999997541 1 2345579999999877753
|
RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. |
| >cd01394 radB RadB | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-28 Score=218.85 Aligned_cols=211 Identities=26% Similarity=0.424 Sum_probs=156.0
Q ss_pred ccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhccc----ccCcce
Q 017792 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGV----KTENLL 114 (366)
Q Consensus 39 i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~----~~~~~~ 114 (366)
+|||+++||.+|+ ||+++|++++|+|+||||||||+++++......++.|+|+++|..++..+.+..+. ...++.
T Consensus 1 i~TGi~~LD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~ 79 (218)
T cd01394 1 LPTGCKGLDELLG-GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSII 79 (218)
T ss_pred CCcchhHHHHHhc-CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEE
Confidence 6899999999999 99999999999999999999999999999988889999999998776433222221 234666
Q ss_pred ecCCCCHHHHHHHH---HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEE
Q 017792 115 LAQPDCGEQALSLV---DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFI 191 (366)
Q Consensus 115 ~~~~~~~e~~l~~~---~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i 191 (366)
+.++.+..++...+ ...+. ..++++||||+++++ ..+..+... .....+.+.+.+..|...+++++++||++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~-~~~~lvvIDsi~~l~-~~~~~~~~~---~~~~~~~l~~~~~~L~~~a~~~~~~vi~t 154 (218)
T cd01394 80 VFEPMDFNEQGRAIQETETFAD-EKVDLVVVDSATALY-RLELGDDDT---TIKNYRELAKQLTFLLWLARKHDVAVVIT 154 (218)
T ss_pred EEeCCCHHHHHHHHHHHHHHHh-cCCcEEEEechHHhh-hHHhcCccc---hHHHHHHHHHHHHHHHHHHHHhCCEEEEe
Confidence 76776665554433 33333 348999999999986 333332111 12344456666677777778899999999
Q ss_pred ecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCCCC
Q 017792 192 NQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGIS 270 (366)
Q Consensus 192 ~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~ 270 (366)
||.+...+. ....+.||+.|+|++|.+|.|++.+ + +.+ ...+.|+|..++...+.|.|+ +.||.
T Consensus 155 ~q~~~~~~~-----~~~~p~~g~~~~~~~d~~i~l~~~~----~----~~r-~~~~~~~~~~~~~~~~~f~It-~~Gi~ 218 (218)
T cd01394 155 NQVYSDVGS-----GSVRPLGGHTLEHWSKVILRLEKLR----V----GTR-RAVLEKHRFRPEGSSVYFRIT-DKGIE 218 (218)
T ss_pred cCCEEcCCC-----CcccccCCcchhcceeEEEEEEEcC----C----CeE-EEEEeeCCCCCCCceEEEEEe-CCccC
Confidence 999866432 2245788999999999999999753 1 233 344778888888778899999 88863
|
The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear. |
| >TIGR02236 recomb_radA DNA repair and recombination protein RadA | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-28 Score=230.13 Aligned_cols=219 Identities=28% Similarity=0.477 Sum_probs=166.1
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEeCCCCCCHH----HH
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDPS----LA 103 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~------~gg~vl~id~e~~~~~~----~~ 103 (366)
....+++||++.||.+|+ ||+|.|++++|+|+|||||||||++++..++. .++.|+||++|+.+++. ++
T Consensus 72 ~s~~~~~Tg~~~lD~~l~-GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~ 150 (310)
T TIGR02236 72 KTIGKITTGSKELDELLG-GGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMA 150 (310)
T ss_pred ccCCeecCCCHHHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHH
Confidence 567789999999999999 99999999999999999999999999988764 24589999999988753 34
Q ss_pred hhccccc----CcceecCCCCHHHHH---HHHHHHHhcC--CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHH
Q 017792 104 ETIGVKT----ENLLLAQPDCGEQAL---SLVDTLIRSG--SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQAL 174 (366)
Q Consensus 104 ~~ig~~~----~~~~~~~~~~~e~~l---~~~~~~~~~~--~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L 174 (366)
+.+|+++ +++.+......++.+ +.+..++... .++++||||+++++ +.++.+. ++ ...+.+.+.+.+
T Consensus 151 ~~~gl~~~~~~~~i~i~~~~~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~-r~e~~~~-~~--~~~r~~~l~~~~ 226 (310)
T TIGR02236 151 EARGLDPDEVLKNIYVARAYNSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHF-RAEYVGR-GA--LAERQQKLNKHL 226 (310)
T ss_pred HHcCCCHHHHhhceEEEecCCHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhh-hHhhcCc-hh--HHHHHHHHHHHH
Confidence 4556653 566677666555433 3334444443 37899999999987 4555432 11 122334566667
Q ss_pred HHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCC
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAP 254 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~ 254 (366)
..|...+++++++||+|||++.+.+. .++++ ..++||..|+|+++.||.|++.. +..+.+++.||++.|
T Consensus 227 ~~L~~~a~~~~~~v~~tnqv~~~~~~-~~~~~-~~~~~G~~~~h~~~~rl~l~~~~---------~~~R~~~~~k~~~~~ 295 (310)
T TIGR02236 227 HDLLRLADLYNAAVVVTNQVMARPDA-FFGDP-TRPIGGHILGHAATFRVYLRKGK---------GDKRIARLVDSPHLP 295 (310)
T ss_pred HHHHHHHHHhCcEEEEeceeeecCcc-ccCcc-ccCCcchhhhhheeEEEEEEecC---------CCeEEEEEEECCCCC
Confidence 77777778999999999999987653 24444 68999999999999999999742 223479999999988
Q ss_pred CCCeeEEEEEeCCCCC
Q 017792 255 PFKTAQFELEFGKGIS 270 (366)
Q Consensus 255 ~~~~~~~~i~~~~Gi~ 270 (366)
+.. +.|.|. +.||.
T Consensus 296 ~~~-~~f~i~-~~Gi~ 309 (310)
T TIGR02236 296 EGE-AVFRIT-EKGIE 309 (310)
T ss_pred Cee-EEEEEe-CCCcc
Confidence 865 479998 78874
|
This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. |
| >PRK04301 radA DNA repair and recombination protein RadA; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=226.98 Aligned_cols=219 Identities=28% Similarity=0.469 Sum_probs=165.7
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCeEEEEeCCCCCCHH----HH
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDPS----LA 103 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~------gg~vl~id~e~~~~~~----~~ 103 (366)
+...+++||++.||.+|+ ||+|+|.+++|+|+||||||+||++++..++.. ++.++|+++|+.++.. ++
T Consensus 79 ks~~~~~Tg~~~lD~~l~-GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~ 157 (317)
T PRK04301 79 KNVGKITTGSKELDELLG-GGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMA 157 (317)
T ss_pred ccCCccCCCCHHHHHHhc-CCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHH
Confidence 557789999999999999 999999999999999999999999999887643 3589999999988753 45
Q ss_pred hhccccc----CcceecCCCCHHHH---HHHHHHHHhc-CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHH
Q 017792 104 ETIGVKT----ENLLLAQPDCGEQA---LSLVDTLIRS-GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALR 175 (366)
Q Consensus 104 ~~ig~~~----~~~~~~~~~~~e~~---l~~~~~~~~~-~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~ 175 (366)
+++|+++ +++.+.++.+.++. +..+..++.. ..++++||||+++++ +.++.+. ++. ..+.+.+.+.+.
T Consensus 158 ~~~g~~~~~~l~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~-~~~~~~~-~~~--~~r~~~l~~~~~ 233 (317)
T PRK04301 158 EALGLDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHF-RAEYVGR-GNL--AERQQKLNKHLH 233 (317)
T ss_pred HHcCCChHhhhccEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECchHHh-hhhccCC-ccH--HHHHHHHHHHHH
Confidence 5677765 35566666555544 3344455555 678999999999987 4444432 111 112333556666
Q ss_pred HHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCC
Q 017792 176 KLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP 255 (366)
Q Consensus 176 ~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~ 255 (366)
.|.+.+++++++||++||++...+. .+ ++...++||..|.|++++||.|.+.. +..+.++++|+++.|+
T Consensus 234 ~L~~la~~~~vavl~tnqv~~~~~~-~~-~~~~~~~~G~~~~~~~~~rl~l~k~~---------~~~R~~~v~k~~~~~~ 302 (317)
T PRK04301 234 DLLRLADLYNAAVVVTNQVMARPDA-FF-GDPTQPIGGHILGHTATFRIYLRKSK---------GNKRIARLVDSPHLPE 302 (317)
T ss_pred HHHHHHHHhCCEEEEeceEEecccc-cc-CccccCCcchHhHhheeEEEEEEecC---------CCceEEEEEeCCCCCC
Confidence 7777778899999999999877543 14 34478999999999999999999742 1234799999999887
Q ss_pred CCeeEEEEEeCCCCC
Q 017792 256 FKTAQFELEFGKGIS 270 (366)
Q Consensus 256 ~~~~~~~i~~~~Gi~ 270 (366)
+ .+.|.|. +.||.
T Consensus 303 ~-~~~f~I~-~~Gi~ 315 (317)
T PRK04301 303 G-EAVFRIT-EEGIR 315 (317)
T ss_pred c-eEEEEEe-CCccc
Confidence 5 5689998 78874
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=229.19 Aligned_cols=224 Identities=25% Similarity=0.344 Sum_probs=173.2
Q ss_pred ceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--
Q 017792 23 SIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-- 100 (366)
Q Consensus 23 ~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~-- 100 (366)
.+..+.+- .....++++||+++||++|| ||+++|+++.|.|+||+|||||+++++..+.+.+++++|+++|++.++
T Consensus 49 ~~~~~~~~-~~~~~~ri~TGi~eLD~vLg-GGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~ 126 (372)
T cd01121 49 KVIPLSDI-EAEEEERIPTGIEELDRVLG-GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIK 126 (372)
T ss_pred CceEhhhc-cccccCccccCCHHHHHhhc-CCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHH
Confidence 34555542 45567899999999999999 999999999999999999999999999999888889999999987764
Q ss_pred HHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHH
Q 017792 101 SLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180 (366)
Q Consensus 101 ~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~ 180 (366)
.+++++|++.+++.+......++++..+. ..+++++||||++.++ ..++++.+|.. .+.|.++..|.+ .
T Consensus 127 ~Ra~rlg~~~~~l~l~~e~~le~I~~~i~----~~~~~lVVIDSIq~l~-~~~~~~~~g~~---~qvr~~~~~L~~---l 195 (372)
T cd01121 127 LRADRLGISTENLYLLAETNLEDILASIE----ELKPDLVIIDSIQTVY-SSELTSAPGSV---SQVRECTAELMR---F 195 (372)
T ss_pred HHHHHcCCCcccEEEEccCcHHHHHHHHH----hcCCcEEEEcchHHhh-ccccccCCCCH---HHHHHHHHHHHH---H
Confidence 45678999889988887777777766553 4579999999999987 34444434433 345555444444 4
Q ss_pred hhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeE
Q 017792 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQ 260 (366)
Q Consensus 181 l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~ 260 (366)
++++++++|+++|.+++- ...|.+.++|++|.+|.+.... .. ..+.++++|||+++......
T Consensus 196 ak~~~itvilvghvtk~g----------~~aG~~~leh~vD~Vi~le~~~-------~~-~~R~Lri~KnR~g~~~ei~~ 257 (372)
T cd01121 196 AKERNIPIFIVGHVTKEG----------SIAGPKVLEHMVDTVLYFEGDR-------HS-EYRILRSVKNRFGSTNELGV 257 (372)
T ss_pred HHHcCCeEEEEeeccCCC----------cccCcccchhhceEEEEEEcCC-------CC-cEEEEEEEeCCCCCCCCEEE
Confidence 467899999999988751 1234456999999999887532 11 23379999999998888899
Q ss_pred EEEEeCCCCCchhhHHHH
Q 017792 261 FELEFGKGISRESEIIDL 278 (366)
Q Consensus 261 ~~i~~~~Gi~~~~~i~~~ 278 (366)
|+|. +.|+....++...
T Consensus 258 F~i~-~~Gl~~v~~ps~~ 274 (372)
T cd01121 258 FEMR-ENGLREVSNPSEL 274 (372)
T ss_pred EEEC-CCCeEEccChhhh
Confidence 9999 9999876665544
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-27 Score=234.12 Aligned_cols=225 Identities=20% Similarity=0.273 Sum_probs=173.4
Q ss_pred eEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--H
Q 017792 24 IMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--S 101 (366)
Q Consensus 24 ~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~ 101 (366)
+..+.+- ......+++||+++||++|| ||+++|++++|.|+||+|||||+++++..+.+.+++|+|+++|++..+ .
T Consensus 62 ~~~~~~~-~~~~~~ri~TGi~~LD~vLg-GGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ 139 (454)
T TIGR00416 62 SQTISAI-ELEEVPRFSSGFGELDRVLG-GGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKM 139 (454)
T ss_pred ceEhhhc-cccccCccccCcHHHHHHhc-CCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHH
Confidence 4455542 44567899999999999999 999999999999999999999999999999888889999999988764 3
Q ss_pred HHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHh
Q 017792 102 LAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL 181 (366)
Q Consensus 102 ~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l 181 (366)
+++++|++.+++.+....+.+++...+. ..+++++||||++.+. ..++.+.+|.. .+.|.+...|.+ .+
T Consensus 140 ra~rlg~~~~~l~~~~e~~~~~I~~~i~----~~~~~~vVIDSIq~l~-~~~~~~~~g~~---~q~r~~~~~L~~---~a 208 (454)
T TIGR00416 140 RAIRLGLPEPNLYVLSETNWEQICANIE----EENPQACVIDSIQTLY-SPDISSAPGSV---SQVRECTAELMR---LA 208 (454)
T ss_pred HHHHcCCChHHeEEcCCCCHHHHHHHHH----hcCCcEEEEecchhhc-ccccccCCCCH---HHHHHHHHHHHH---HH
Confidence 4678999989998888777776665553 4578999999999987 34454444443 345555444444 44
Q ss_pred hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEE
Q 017792 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQF 261 (366)
Q Consensus 182 ~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~ 261 (366)
++.|+|+++++|.+++- ..+|...++|++|.+|.|+... . ...+.++++|+|+++......|
T Consensus 209 k~~giTvllt~hvtkeg----------~~aG~~~le~lvD~VI~Le~~~----~----~~~R~L~v~K~R~g~~~e~~~f 270 (454)
T TIGR00416 209 KTRGIAIFIVGHVTKEG----------SIAGPKVLEHMVDTVLYFEGDR----D----SRFRILRSVKNRFGATNEIGIF 270 (454)
T ss_pred HHhCCEEEEEeccccCC----------ccCCcccEeeeceEEEEEeccC----C----CcEEEEEEecCCCCCCCcEEEE
Confidence 67899999999987641 1233345999999999998632 1 2334799999999988888999
Q ss_pred EEEeCCCCCchhhHHHHHH
Q 017792 262 ELEFGKGISRESEIIDLAL 280 (366)
Q Consensus 262 ~i~~~~Gi~~~~~i~~~~~ 280 (366)
+|+ +.|+....++..+-.
T Consensus 271 ~it-~~Gl~~v~~ps~~f~ 288 (454)
T TIGR00416 271 EMT-EQGLREVLNPSAIFL 288 (454)
T ss_pred EEe-cCCceecCChhHhhh
Confidence 999 999976666555444
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-27 Score=215.94 Aligned_cols=216 Identities=32% Similarity=0.532 Sum_probs=158.3
Q ss_pred ccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCeEEEEeCCCCCCHH----HHhhccc
Q 017792 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDPS----LAETIGV 108 (366)
Q Consensus 39 i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~------gg~vl~id~e~~~~~~----~~~~ig~ 108 (366)
+|||++.||.+|+ ||+++|++++|+|+||||||+|+++++...... ++.|+|+++|+.+... .++..++
T Consensus 1 ~~tG~~~lD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~ 79 (235)
T cd01123 1 LTTGSKALDELLG-GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGL 79 (235)
T ss_pred CCCCchhhHhhcc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhcc
Confidence 6899999999999 999999999999999999999999999876543 3689999999987643 2334444
Q ss_pred c----cCcceecCCCCHHHHHHH---HHHHHhcC-CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHH
Q 017792 109 K----TENLLLAQPDCGEQALSL---VDTLIRSG-SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180 (366)
Q Consensus 109 ~----~~~~~~~~~~~~e~~l~~---~~~~~~~~-~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~ 180 (366)
+ .+++.+..+.+.+++... +...+... +++++||||+++++ ...+.+. + .....++.+.+.+..|...
T Consensus 80 ~~~~~~~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~-~~~~~~~-~--~~~~r~~~l~~~~~~L~~l 155 (235)
T cd01123 80 DPEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALF-RAEFDGR-G--ELAERQQHLAKLLRTLKRL 155 (235)
T ss_pred ChHhHhcCEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHH-HHHhcCC-c--cHHHHHHHHHHHHHHHHHH
Confidence 3 346677777776666544 34445555 89999999999986 2333221 1 1122334455666666666
Q ss_pred hhhcCcEEEEEecCCccccccc-CCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCee
Q 017792 181 LSLSQTILIFINQVRAKLSTFG-FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTA 259 (366)
Q Consensus 181 l~~~~~tVI~i~h~~~~~~~~~-~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~ 259 (366)
+++++++||++||.+...+... +.+....+++|..|.+.++.|+.+.+.. +..+.+.++|++..+ ....
T Consensus 156 a~~~~~avl~tn~~~~~~~~~~~~~~~~~~p~lG~~w~~~v~~Rl~l~~~~---------~~~r~~~i~k~~~~~-~~~~ 225 (235)
T cd01123 156 ADEFNVAVVITNQVTARPDGAAMFGGDPKKPAGGNIWAHASTTRLYLRKGR---------GEERIAKIVDSPHLP-EGEA 225 (235)
T ss_pred HHHhCCEEEEeccEeecCCcccccCCCCeeccCccHhhCCceEEEEEEECC---------CCceEEEEeeCCCCC-CceE
Confidence 6789999999999987654311 1223356889999999999999998753 123479999998877 4578
Q ss_pred EEEEEeCCCCC
Q 017792 260 QFELEFGKGIS 270 (366)
Q Consensus 260 ~~~i~~~~Gi~ 270 (366)
.|.|+ +.||.
T Consensus 226 ~f~It-~~Gi~ 235 (235)
T cd01123 226 VFAIT-EEGIR 235 (235)
T ss_pred EEEEe-CCccC
Confidence 99998 78863
|
This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . |
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=228.94 Aligned_cols=226 Identities=26% Similarity=0.350 Sum_probs=173.0
Q ss_pred eEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--H
Q 017792 24 IMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--S 101 (366)
Q Consensus 24 ~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~ 101 (366)
+..+.+. ......+++||+++||++|| ||+++|++++|.|+||+|||||+++++..+...+++|+|+++|++.++ .
T Consensus 48 ~~~~~~~-~~~~~~ri~TGi~~LD~~Lg-GGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ 125 (446)
T PRK11823 48 VQPLSDI-EAEEEPRISTGIGELDRVLG-GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKL 125 (446)
T ss_pred ceehhhc-ccccCCcccCCcHHHHHHhc-CCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHH
Confidence 3445442 45567899999999999999 999999999999999999999999999998877889999999988774 4
Q ss_pred HHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHh
Q 017792 102 LAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL 181 (366)
Q Consensus 102 ~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l 181 (366)
+++++|++.+++.+......++++..+. ..+++++||||++.++ ..++++.++.. .+.|.++..| .+.+
T Consensus 126 ra~rlg~~~~~l~~~~e~~l~~i~~~i~----~~~~~lVVIDSIq~l~-~~~~~~~~g~~---~qvr~~~~~L---~~~a 194 (446)
T PRK11823 126 RAERLGLPSDNLYLLAETNLEAILATIE----EEKPDLVVIDSIQTMY-SPELESAPGSV---SQVRECAAEL---MRLA 194 (446)
T ss_pred HHHHcCCChhcEEEeCCCCHHHHHHHHH----hhCCCEEEEechhhhc-cccccCCCCCH---HHHHHHHHHH---HHHH
Confidence 5778999888888877777776666553 4578999999999987 34555444443 3445444444 4445
Q ss_pred hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEE
Q 017792 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQF 261 (366)
Q Consensus 182 ~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~ 261 (366)
+++|+++|+++|.+.+- ...|...++|++|.++.+.... + ...+.++++|||+++......|
T Consensus 195 k~~~itvilv~hvtk~~----------~~ag~~~lehlvD~Vi~le~~~----~----~~~R~l~i~K~R~g~~~e~~~f 256 (446)
T PRK11823 195 KQRGIAVFLVGHVTKEG----------AIAGPRVLEHMVDTVLYFEGDR----H----SRYRILRAVKNRFGATNEIGVF 256 (446)
T ss_pred HHcCCEEEEEeeccCCC----------CcCCcchhhhhCeEEEEEEcCC----C----CceEEEEEccCCCCCCCceEEE
Confidence 67899999999987641 1233456999999999886311 1 2344799999999998888899
Q ss_pred EEEeCCCCCchhhHHHHHHh
Q 017792 262 ELEFGKGISRESEIIDLALK 281 (366)
Q Consensus 262 ~i~~~~Gi~~~~~i~~~~~~ 281 (366)
+|+ +.|+....++...-..
T Consensus 257 ~it-~~Gi~~v~~ps~~~~~ 275 (446)
T PRK11823 257 EMT-EQGLREVSNPSELFLS 275 (446)
T ss_pred EEc-CCCceECCCHHHHHhc
Confidence 999 9999876666554443
|
|
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-25 Score=202.63 Aligned_cols=200 Identities=28% Similarity=0.434 Sum_probs=149.2
Q ss_pred HHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhc-----ccccCcceecCCCC
Q 017792 46 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETI-----GVKTENLLLAQPDC 120 (366)
Q Consensus 46 LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~i-----g~~~~~~~~~~~~~ 120 (366)
||.+|+ ||+|+|++++|+|+||||||+|+++++......++.|+|+++|+ +.+.+..++ ....+++.+.++.+
T Consensus 1 lD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~~~~~~~~~~~~~~i~~~~~~~ 78 (209)
T TIGR02237 1 IDELLG-GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFKQIAEDRPERALSNFIVFEVFD 78 (209)
T ss_pred Chhhhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHHHHHHhChHHHhcCEEEEECCC
Confidence 799999 99999999999999999999999999999888888999999997 554332222 22346777777776
Q ss_pred HHHH---HHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcc
Q 017792 121 GEQA---LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 121 ~e~~---l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
..+. +..+...+....++++||||+++++ +.+..+... ...+.+...+..|.+.++++++++|++||.+..
T Consensus 79 ~~~~~~~~~~l~~~~~~~~~~lvVIDSis~l~-~~~~~~~~~-----~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~ 152 (209)
T TIGR02237 79 FDEQGVAIQKTSKFIDRDSASLVVVDSFTALY-RLELSDDRI-----SRNRELARQLTLLLSLARKKNLAVVITNQVYTD 152 (209)
T ss_pred HHHHHHHHHHHHHHHhhcCccEEEEeCcHHHh-HHHhCCccH-----HHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEe
Confidence 6665 4444455556679999999999987 333332211 223344555666666668899999999998765
Q ss_pred cccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCCC
Q 017792 198 LSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGI 269 (366)
Q Consensus 198 ~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi 269 (366)
.+. ....+.||..++|++|.++.|++. . +.+ .+.+.|++..++...+.|.|+ +.||
T Consensus 153 ~~~-----~~~~~~gg~~~~~~~d~vi~l~~~----~-----~~r-~~~i~k~~~~~~~~~~~f~It-~~Gi 208 (209)
T TIGR02237 153 VNN-----GTLRPLGGHLLEHWSKVILRLEKF----R-----GRR-LATLEKHRSRPEGESVYFRIT-DDGI 208 (209)
T ss_pred cCC-----CCCcCCCcchhheeeeEEEEEEec----C-----CEE-EEEEEECCCCCCCCeEEEEEe-CCcc
Confidence 332 224577888999999999999864 1 233 566888888888788999999 7886
|
This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). |
| >TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-25 Score=205.18 Aligned_cols=216 Identities=20% Similarity=0.284 Sum_probs=154.2
Q ss_pred cccCChHHHHHhh--------------CCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH---
Q 017792 38 VVSTGSFALDIAL--------------GTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--- 100 (366)
Q Consensus 38 ~i~TG~~~LD~~L--------------~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--- 100 (366)
++|||+++||.+| + ||+|+|++++|+|+||+||||||++++......+.+|+|++.|+..+.
T Consensus 3 ~~~tGi~glD~~l~~~~~~~~~~~~~~~-GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~ 81 (259)
T TIGR03878 3 GVPTGVEGLDELFFKVEIEEGKIVRKPL-GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYT 81 (259)
T ss_pred CccCCchhHHHhhccccccccccccccC-CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHH
Confidence 6899999999999 6 999999999999999999999999999988878889999999975542
Q ss_pred ---HHHhhcccccC----cceecCCC-------CHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHH
Q 017792 101 ---SLAETIGVKTE----NLLLAQPD-------CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQ 166 (366)
Q Consensus 101 ---~~~~~ig~~~~----~~~~~~~~-------~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ 166 (366)
..+..+|++.+ ++.+..+. +.++++..+...+...+++++||||++++.... + ..
T Consensus 82 ~l~~~a~~~g~d~~~~~~~l~~id~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~-------~----~~ 150 (259)
T TIGR03878 82 SLKERAKAMGVDFDKIEENIILIDAASSTELRENVPNLLATLAYAIKEYKVKNTVIDSITGLYEAK-------E----MM 150 (259)
T ss_pred HHHHHHHHcCCCHHHHhCCEEEEECCCchhhhhhHHHHHHHHHHHHHhhCCCEEEEcCchHhcccc-------h----HH
Confidence 12456777643 45554443 345667777777778889999999999876210 1 12
Q ss_pred HHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec-C-----ccccc
Q 017792 167 ARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK-G-----EETIG 240 (366)
Q Consensus 167 ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~-~-----~~~~g 240 (366)
+| +.++.|...+++.++|+++++|....... .. ..+.++..+.|.+|.+|.|+....... . .....
T Consensus 151 ~r---~~~~~L~~~lk~~~~t~ll~~e~~~~~~~--~~---~~~~~~~~~~~l~D~vI~L~~~~~~~~~~~~~~~~~~~~ 222 (259)
T TIGR03878 151 AR---EIVRQLFNFMKKWYQTALFVSQKRSGHEE--LS---AEAAGGYAVSHIVDGTIVLAKQLIMSRFDASLYKKPIGE 222 (259)
T ss_pred HH---HHHHHHHHHHHHcCCeEEEEeccccCccc--cc---ccccCCcceeEeeccEEEEeeeeccchhhhhhccccccc
Confidence 23 45566667778899999999997652110 11 123455569999999999985421100 0 00112
Q ss_pred cEEEEEEEecCCCCCC-CeeEEEEEeCCCCCchhh
Q 017792 241 SQIAVKIVKNKLAPPF-KTAQFELEFGKGISRESE 274 (366)
Q Consensus 241 ~~~~l~v~K~r~~~~~-~~~~~~i~~~~Gi~~~~~ 274 (366)
.++.+.|.|+|...+. ...+|.|+ +.||....+
T Consensus 223 ~~R~l~I~KmRg~~h~~~~~~~~It-~~Gi~~i~~ 256 (259)
T TIGR03878 223 IVRLFRIDGCRMCGHDTKTHVLEID-ETGLVKIGP 256 (259)
T ss_pred eEEEEEEEEccCCCCCCceeEEEEc-CCceEEecC
Confidence 3457999999976543 56789998 889765544
|
This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles. |
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=199.49 Aligned_cols=202 Identities=21% Similarity=0.254 Sum_probs=149.5
Q ss_pred CcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCc--
Q 017792 37 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN-- 112 (366)
Q Consensus 37 ~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~-- 112 (366)
++++||++.||.+|+ ||+|+|+++.|.|+||||||+|+.+++......|.+|+|++.|++.+. ..++.+|++++.
T Consensus 1 ~ri~tGi~~LD~~l~-GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~~~~~~ 79 (237)
T TIGR03877 1 KRVKTGIPGMDEILH-GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYE 79 (237)
T ss_pred CccccCcHhHHHHhc-CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCCHHHHh
Confidence 368999999999999 999999999999999999999999999887777889999999987664 334566765432
Q ss_pred ----ceec-------------------CCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHH
Q 017792 113 ----LLLA-------------------QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARL 169 (366)
Q Consensus 113 ----~~~~-------------------~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~ 169 (366)
+.+. .+.+.++++..+...+...+.+++||||++.+.. . . . ...|
T Consensus 80 ~~g~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~-~---~----~---~~~r- 147 (237)
T TIGR03877 80 EEGKFAIVDAFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYI-T---K----P---AMAR- 147 (237)
T ss_pred hcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhc-C---C----h---HHHH-
Confidence 2211 2345677778787777777899999999998762 1 1 0 1122
Q ss_pred HHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEe
Q 017792 170 MSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVK 249 (366)
Q Consensus 170 l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K 249 (366)
..++.|.+.+++.|+|+|+++|.....+ ..++..++|+||.+|.|+... .+. ..++.+.|.|
T Consensus 148 --~~l~~l~~~lk~~~~t~llt~~~~~~~~----------~~~~~~~~~~~D~vI~L~~~~---~~~---~~~R~l~i~K 209 (237)
T TIGR03877 148 --SIVMQLKRVLSGLGCTSIFVSQVSVGER----------GFGGPGVEHAVDGIIRLDLDE---IDG---ELKRSLIVWK 209 (237)
T ss_pred --HHHHHHHHHHHhCCCEEEEEECcccccc----------cccccceEEEEeEEEEEEEEe---eCC---ceEEEEEEEE
Confidence 3456666666789999999999764211 112234899999999998643 111 2344799999
Q ss_pred cCCCCCC-CeeEEEEEeCCCCC
Q 017792 250 NKLAPPF-KTAQFELEFGKGIS 270 (366)
Q Consensus 250 ~r~~~~~-~~~~~~i~~~~Gi~ 270 (366)
+|..++. ...+|.|+ ++||.
T Consensus 210 ~Rg~~~~~~~~~~~It-~~Gi~ 230 (237)
T TIGR03877 210 MRGTKHSMRRHPFEIT-DKGII 230 (237)
T ss_pred CCCCCCCCceEEEEEc-CCCEE
Confidence 9987665 45789998 88875
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >KOG1434 consensus Meiotic recombination protein Dmc1 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-26 Score=202.50 Aligned_cols=223 Identities=28% Similarity=0.430 Sum_probs=179.7
Q ss_pred CCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCeEEEEeCCCCCCHHH----
Q 017792 33 PRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDPSL---- 102 (366)
Q Consensus 33 ~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~------gg~vl~id~e~~~~~~~---- 102 (366)
.+.+..|+||+..||.+|| |||+.=++++|+|.+|+|||+++.+++...+.+ +|+++|||+|.++.+++
T Consensus 91 r~~v~~ItTgs~~lD~ILG-GGI~~m~iTEifGefr~GKTQlshtLcVt~QlPr~~Gg~~Gk~ifIDTEgtFrpdRi~~I 169 (335)
T KOG1434|consen 91 RKTVGSITTGSSALDDILG-GGIPSMSITEIFGEFRCGKTQLSHTLCVTVQLPREMGGVGGKAIFIDTEGTFRPDRIKDI 169 (335)
T ss_pred hhccceeecchHHHhhhhc-CCccchhhHHHcCCCCcCccceeeEEEEEeecchhhCCCCceEEEEecCCccchHHHHHH
Confidence 3668899999999999999 999999999999999999999999998877643 56899999999998654
Q ss_pred Hhhccccc----CcceecCCCCHHHHHHHHH---HHHhc-CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHH
Q 017792 103 AETIGVKT----ENLLLAQPDCGEQALSLVD---TLIRS-GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQAL 174 (366)
Q Consensus 103 ~~~ig~~~----~~~~~~~~~~~e~~l~~~~---~~~~~-~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L 174 (366)
++++.+++ +|+++++..+.++.++.+. ..+++ ++.+++++||+.+++ +..+++. |+.+ .+.|.+.+.+
T Consensus 170 Ae~~~~d~d~~LdNI~y~Ra~~se~qmelv~~L~~~~se~g~~rlvIVDsIma~F-RvDy~gr-geLs--eRqqkLn~ml 245 (335)
T KOG1434|consen 170 AERFKVDPDFTLDNILYFRAYNSEEQMELVYLLGDFLSEHGKYRLVIVDSIMALF-RVDYDGR-GELS--ERQQKLNQML 245 (335)
T ss_pred HHHhCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhcCcEEEEEEeceehhe-eeccccc-ccHH--HHHHHHHHHH
Confidence 55566654 5788888888887776654 34444 589999999999999 7788764 3332 4557788888
Q ss_pred HHHHHHhhhcCcEEEEEecCCccccccc-CCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCC
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFG-FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLA 253 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~-~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~ 253 (366)
.+|.+...+++.+|+++||+..+.+..+ |......|.||..|.|.|..|+.|++++ |..+..++.|+.-
T Consensus 246 ~kl~~laeefnvAVfltNQvttdpga~~~f~s~~~kp~gGh~~aHAsttRlilrkgr---------g~eR~Akl~dSP~- 315 (335)
T KOG1434|consen 246 QKLNKLAEEFNVAVFLTNQVTTDPGAGMTFASQDLKPAGGHSWAHASTTRLILRKGR---------GDERVAKLYDSPS- 315 (335)
T ss_pred HHHHHHHHhccEEEEEecceecCCcccccccccccCccccchhhhhhheeEEEEcCC---------cceeeeecccCCC-
Confidence 8888888999999999999999988644 5554478999999999999999999864 3444677777763
Q ss_pred CCCCeeEEEEEeCCCCCc
Q 017792 254 PPFKTAQFELEFGKGISR 271 (366)
Q Consensus 254 ~~~~~~~~~i~~~~Gi~~ 271 (366)
.|...+.|.|. ..||..
T Consensus 316 mpe~e~~y~It-~~Gi~d 332 (335)
T KOG1434|consen 316 MPEAEASYVIT-PGGIRD 332 (335)
T ss_pred CCcceEEEEEc-CCcccc
Confidence 44467888888 778753
|
|
| >PRK04328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=199.96 Aligned_cols=204 Identities=23% Similarity=0.286 Sum_probs=151.7
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCc-
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN- 112 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~- 112 (366)
+++++||++.||.+|+ ||+|+|+++.|.|+||+|||+|+.+++......|..++|+++|+..+. ..++++|++++.
T Consensus 2 ~~rv~tGi~~LD~lL~-GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~ 80 (249)
T PRK04328 2 VKRVKTGIPGMDEILY-GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQFGWDVRKY 80 (249)
T ss_pred CceecCCchhHHHHhc-CCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHcCCCHHHH
Confidence 3579999999999999 999999999999999999999999999888788899999999987764 345667775432
Q ss_pred -----ceec-------------------CCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHH
Q 017792 113 -----LLLA-------------------QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQAR 168 (366)
Q Consensus 113 -----~~~~-------------------~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar 168 (366)
+.+. .+...++++..+...+...+++++||||++.+.. . . . ...|
T Consensus 81 ~~~~~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~-~---~----~---~~~r 149 (249)
T PRK04328 81 EEEGKFAIVDAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYL-T---K----P---AMAR 149 (249)
T ss_pred hhcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhc-C---C----h---HHHH
Confidence 2211 2334566777777777777899999999998862 1 1 0 1123
Q ss_pred HHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEE
Q 017792 169 LMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIV 248 (366)
Q Consensus 169 ~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~ 248 (366)
..+..|...+++.|+|+++++|.... ..+.++..++|+||.+|.|+.... .+ ..++.+.|.
T Consensus 150 ---~~~~~l~~~lk~~g~t~llt~e~~~~----------~~~~~~~~~~~~~D~vI~L~~~~~--~~----~~~R~l~I~ 210 (249)
T PRK04328 150 ---SIVMQLKRVLSGLGCTAIFVSQVSVG----------ERGFGGPGVEHAVDGIIRLDLDEI--DG----ELKRSLIVW 210 (249)
T ss_pred ---HHHHHHHHHHHhCCCEEEEEECcccc----------ccccCCCCcEEEEEEEEEEEEEec--CC----cEEEEEEEE
Confidence 34556666667889999999997642 112233448999999999986431 11 234479999
Q ss_pred ecCCCCCC-CeeEEEEEeCCCCCc
Q 017792 249 KNKLAPPF-KTAQFELEFGKGISR 271 (366)
Q Consensus 249 K~r~~~~~-~~~~~~i~~~~Gi~~ 271 (366)
|+|..++. ...+|.|+ +.|+..
T Consensus 211 K~Rg~~~~~~~~~~~It-~~Gi~v 233 (249)
T PRK04328 211 KMRGTKHSMRRHPFEIT-DKGIVV 233 (249)
T ss_pred EccCCCCCCceEEEEEc-CCCEEE
Confidence 99987664 45789998 789863
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.7e-23 Score=186.22 Aligned_cols=202 Identities=21% Similarity=0.265 Sum_probs=144.7
Q ss_pred cccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCcc--
Q 017792 38 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENL-- 113 (366)
Q Consensus 38 ~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~~-- 113 (366)
+++||++.||.+|+ ||+|+|++++|.|+||+|||||+.+++......+..++|++.|+..+. ..++++|++++++
T Consensus 1 ri~tGi~~LD~~l~-GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~ 79 (229)
T TIGR03881 1 RLSTGVEGLDKLLE-GGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIE 79 (229)
T ss_pred CcCCChhhHHHhhc-CCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhh
Confidence 47999999999999 999999999999999999999999998877677889999999887664 3466778766532
Q ss_pred ----eec-------------CCCCHHHHHHHHHHHHhcC--CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHH
Q 017792 114 ----LLA-------------QPDCGEQALSLVDTLIRSG--SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQAL 174 (366)
Q Consensus 114 ----~~~-------------~~~~~e~~l~~~~~~~~~~--~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L 174 (366)
.+. ...+.+++...+....... ..++++|||+..+.. . ++ ...| ..+
T Consensus 80 ~~~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~-~----~~------~~~r---~~~ 145 (229)
T TIGR03881 80 EGKLVIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWL-D----KP------AMAR---KYS 145 (229)
T ss_pred cCCEEEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhc-c----Ch------HHHH---HHH
Confidence 221 1246777777777766542 467999999998862 1 11 1223 234
Q ss_pred HHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCC
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAP 254 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~ 254 (366)
+.|...+++.|+|+|+++|...... + ..+..++++||.+|.|+... ..+ ..++.+.|.|+|..+
T Consensus 146 ~~l~~~l~~~~~tvil~~~~~~~~~------~----~~~~~~~~l~D~vI~L~~~~--~~~----~~~R~i~i~K~R~~~ 209 (229)
T TIGR03881 146 YYLKRVLNRWNFTILLTSQYAITTS------Q----AFGFGIEHVADGIIRFRKVV--VDG----ELRRYLIVEKMRQTN 209 (229)
T ss_pred HHHHHHHHhCCCEEEEEecccccCC------C----CcccceEEEEeEEEEEEEec--cCC----cEEEEEEEEeccCCC
Confidence 4555556778999999999543210 0 11123899999999998643 111 234479999999775
Q ss_pred CC-CeeEEEEEeCCCCC
Q 017792 255 PF-KTAQFELEFGKGIS 270 (366)
Q Consensus 255 ~~-~~~~~~i~~~~Gi~ 270 (366)
+. ...+|+|..+.||.
T Consensus 210 ~~~~~~~~~I~~~~Gi~ 226 (229)
T TIGR03881 210 HDKRAWEIDIVPGKGLV 226 (229)
T ss_pred CCCceeEEEEcCCCceE
Confidence 43 46778887557875
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=190.96 Aligned_cols=201 Identities=28% Similarity=0.376 Sum_probs=143.9
Q ss_pred ccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCH--HHHhhcccccCc---
Q 017792 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDP--SLAETIGVKTEN--- 112 (366)
Q Consensus 39 i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~--~~~~~ig~~~~~--- 112 (366)
+|||++.||.+|+ ||+|+|++++|.|+||+|||+|+.+++...... |.+|+|++.+++... ..++.+|++...
T Consensus 1 V~TGI~~LD~~l~-GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~ 79 (226)
T PF06745_consen 1 VPTGIPGLDELLG-GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYED 79 (226)
T ss_dssp E--SSTTHHHHTT-TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHH
T ss_pred CCCCchhHHHhhc-CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhh
Confidence 6899999999999 999999999999999999999999999888888 999999999887764 345677776542
Q ss_pred ---ceecC---------CCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHH
Q 017792 113 ---LLLAQ---------PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180 (366)
Q Consensus 113 ---~~~~~---------~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~ 180 (366)
+.+.+ +.+.++++..+...+...+.+++||||++.+. ... . .. . +..+++.+...
T Consensus 80 ~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~~--~---~~----~---~r~~l~~l~~~ 146 (226)
T PF06745_consen 80 SGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LYD--D---PE----E---LRRFLRALIKF 146 (226)
T ss_dssp TTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TSS--S---GG----G---HHHHHHHHHHH
T ss_pred cCCEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hcC--C---HH----H---HHHHHHHHHHH
Confidence 22221 45678888888888777778999999999983 111 1 11 1 22467777777
Q ss_pred hhhcCcEEEEEecCCcccccccCCCCeeeccCCceeee-eceEEEEEEEeceeecCccccccEEEEEEEecCCCCC-CCe
Q 017792 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKF-YASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP-FKT 258 (366)
Q Consensus 181 l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~-~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~-~~~ 258 (366)
+++.|+|+|++.|...... ......+.+ +||.+|.|+... .+. ..++.+.|.|+|..++ ...
T Consensus 147 l~~~~~t~llt~~~~~~~~----------~~~~~~i~~~l~D~vI~L~~~~---~~~---~~~R~l~I~K~Rg~~~~~~~ 210 (226)
T PF06745_consen 147 LKSRGVTTLLTSEMPSGSE----------DDGTFGIEHYLADGVIELRYEE---EGG---RIRRRLRIVKMRGSRHSTGI 210 (226)
T ss_dssp HHHTTEEEEEEEEESSSSS----------SSSSTSHHHHHSSEEEEEEEEE---ETT---EEEEEEEEEEETTS----BE
T ss_pred HHHCCCEEEEEEccccCcc----------cccccchhhhcccEEEEEEEEe---eCC---EEEEEEEEEEcCCCCCCCcE
Confidence 7889999999999543211 122233766 999999998643 111 3455799999998765 457
Q ss_pred eEEEEEeCCCCC
Q 017792 259 AQFELEFGKGIS 270 (366)
Q Consensus 259 ~~~~i~~~~Gi~ 270 (366)
.+|.|. +.|+.
T Consensus 211 ~~f~I~-~~Gi~ 221 (226)
T PF06745_consen 211 HPFEIT-PGGIE 221 (226)
T ss_dssp EEEEEE-TTEEE
T ss_pred EEEEEE-CCeEE
Confidence 889998 58875
|
More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C .... |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=201.94 Aligned_cols=206 Identities=17% Similarity=0.214 Sum_probs=147.3
Q ss_pred CcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCH--HHHhhcccccCcc
Q 017792 37 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDP--SLAETIGVKTENL 113 (366)
Q Consensus 37 ~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~--~~~~~ig~~~~~~ 113 (366)
+++|||++.||.+|+ ||+|+|+++.|.|+||||||||+++++...... +.+|+|++.+++.+. ..++++|++++.+
T Consensus 1 ~r~~TGI~gLD~il~-GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~ 79 (484)
T TIGR02655 1 AKIRTMIEGFDDISH-GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKL 79 (484)
T ss_pred CcCCCCchhHHHhcC-CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHH
Confidence 368999999999999 999999999999999999999999998876555 789999999987764 4577889877633
Q ss_pred ------eecC------------CCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHH
Q 017792 114 ------LLAQ------------PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALR 175 (366)
Q Consensus 114 ------~~~~------------~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~ 175 (366)
.+.. ....++++..+...++.++.+.++|||+.++...... . ... .+.+.
T Consensus 80 ~~~g~l~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~------~---~~~---r~~l~ 147 (484)
T TIGR02655 80 VDEGKLFILDASPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDA------V---SVV---RREIF 147 (484)
T ss_pred hhcCceEEEecCchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCc------h---HHH---HHHHH
Confidence 2221 1345666777777778889999999999887521111 0 111 23455
Q ss_pred HHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCC
Q 017792 176 KLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP 255 (366)
Q Consensus 176 ~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~ 255 (366)
.+.+.+++.|+|+|+++|....... ... .| ..+++||.+|.|+... .+. ..++.+.|.|+|..++
T Consensus 148 ~Li~~L~~~g~TvLLtsh~~~~~~~-------~~~-~~-~~e~laDgVI~L~~~~---~~~---~~~R~l~I~K~Rgs~~ 212 (484)
T TIGR02655 148 RLVARLKQIGVTTVMTTERIEEYGP-------IAR-YG-VEEFVSDNVVILRNVL---EGE---RRRRTLEILKLRGTSH 212 (484)
T ss_pred HHHHHHHHCCCEEEEEecCcccccc-------ccc-CC-ceeEeeeeEEEEEEEe---cCC---EEEEEEEEEECCCCCc
Confidence 5566667789999999998654211 110 01 1389999999998542 221 1234799999997654
Q ss_pred C-CeeEEEEEeCCCCCc
Q 017792 256 F-KTAQFELEFGKGISR 271 (366)
Q Consensus 256 ~-~~~~~~i~~~~Gi~~ 271 (366)
. ...+|.|+ +.||..
T Consensus 213 ~~~~~~~~It-~~Gi~v 228 (484)
T TIGR02655 213 MKGEYPFTIT-DHGINI 228 (484)
T ss_pred CCceEEEEEc-CCcEEE
Confidence 3 35678887 667663
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-22 Score=200.30 Aligned_cols=208 Identities=19% Similarity=0.217 Sum_probs=158.6
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN 112 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~ 112 (366)
...+++||+++||++|| ||+|+|+++.|.||||+|||||+++++......|.+|+|+++|++.++ ..++++|++.++
T Consensus 241 ~~~~~~tGi~~lD~~lg-GG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~ 319 (484)
T TIGR02655 241 SNVRVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEE 319 (484)
T ss_pred cccccCCChHhHHHHhc-CCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHH
Confidence 45689999999999999 999999999999999999999999999999988889999999999875 567889987754
Q ss_pred ------ceecC----CCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhh
Q 017792 113 ------LLLAQ----PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS 182 (366)
Q Consensus 113 ------~~~~~----~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~ 182 (366)
+.+.. ..+.++.+..+...+...+++++||||++.+.. . +.. .+.| ..+..|...++
T Consensus 320 ~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~-~-~~~--------~~~r---~~~~~l~~~lk 386 (484)
T TIGR02655 320 MEQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALAR-G-VSN--------NAFR---QFVIGVTGYAK 386 (484)
T ss_pred HhhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHHH-h-cCH--------HHHH---HHHHHHHHHHh
Confidence 33322 235578888888888888899999999998862 1 211 1223 34566777778
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCC-CCeeEE
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP-FKTAQF 261 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~-~~~~~~ 261 (366)
+.|+|+++++......+ ....+. ..+++++|.+|.|+..+. .+ ..++.+.|+|.|...+ ....+|
T Consensus 387 ~~~it~~~t~~~~~~~~------~~~~~~--~~~s~l~D~ii~l~~~e~--~g----~~~r~i~V~K~R~~~~~~~~~~~ 452 (484)
T TIGR02655 387 QEEITGFFTNTSDQFMG------SHSITD--SHISTITDTILMLQYVEI--RG----EMSRAINVFKMRGSWHDKGIREF 452 (484)
T ss_pred hCCCeEEEeeccccccc------CCccCC--CCeeEeeeEEEEEEEEec--CC----EEEEEEEEEEccCCCCCCceEEE
Confidence 89999999977543211 101111 228999999999986542 11 2344688999997754 367889
Q ss_pred EEEeCCCCCc
Q 017792 262 ELEFGKGISR 271 (366)
Q Consensus 262 ~i~~~~Gi~~ 271 (366)
.|+ +.||..
T Consensus 453 ~It-~~Gi~v 461 (484)
T TIGR02655 453 MIS-DKGPEI 461 (484)
T ss_pred EEc-CCcEEE
Confidence 999 899864
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >KOG1564 consensus DNA repair protein RHP57 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-22 Score=178.58 Aligned_cols=228 Identities=26% Similarity=0.377 Sum_probs=163.7
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCeEEEEeCCCCCCHHHHhhc-
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDPSLAETI- 106 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~------gg~vl~id~e~~~~~~~~~~i- 106 (366)
....+++||++.||..|+ ||||.+.+++|+|++|+|||+|++|++...+.. ++.++||.+|..++..+..++
T Consensus 79 ~~~~~lttgc~~LD~~L~-GGi~~~giTEi~GeSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP~rRL~qL~ 157 (351)
T KOG1564|consen 79 TNRSKLTTGCVALDECLR-GGIPTDGITEICGESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFPTRRLHQLS 157 (351)
T ss_pred CCchhcccccHHHHHHhc-CCcccccHHHHhhccCCcHHHHHHHHHHHhhCchhhCCCCCceEEEEcCCCCcHHHHHHHH
Confidence 344689999999999999 999999999999999999999999999888742 468999999999885442222
Q ss_pred cccc------------C----cceecCCCCHHHHHHHHHH----HHhcCCceEEEEecccccCCCCccCCccchh-hHHH
Q 017792 107 GVKT------------E----NLLLAQPDCGEQALSLVDT----LIRSGSVDVVVVDSVAALVPKGELDGEMGDA-HMAM 165 (366)
Q Consensus 107 g~~~------------~----~~~~~~~~~~e~~l~~~~~----~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~-~~~~ 165 (366)
.+.+ . ++++.....++.++.++.. +.....+++|||||+++.+ +.+++....+. .+..
T Consensus 158 ~~~~~rp~~~~~~~~~~Npgd~IFv~~~~d~d~l~~iv~~qlPiL~~r~~i~LVIiDSVAa~f-R~E~d~~~Sdl~~r~~ 236 (351)
T KOG1564|consen 158 HTLPQRPNPEKELNYNDNPGDHIFVENVHDVDHLLHIVNRQLPILLNRKKIKLVIIDSVAALF-RSEFDYNPSDLKKRAR 236 (351)
T ss_pred HhcccCCCcchhhhhccCCCceEEEEeccchhhHHHHHhhhccceeccCcceEEEEehhhHHH-HHHhccChhhhhhHHH
Confidence 1111 1 2455555567777777665 3456679999999999999 77776433322 2233
Q ss_pred HHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccccc------CCCCe-------eeccCCceeeeeceEEEEEEEecee
Q 017792 166 QARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFG------FGGPT-------EVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 166 ~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~------~~~~~-------~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
+-+.++..|+.|+ .+++++|+++||+.+.+.... +.+-. ..|+.|-.|++...+|+.+.|..
T Consensus 237 ~l~rla~~Lr~LA---~~~~~aVV~~NQVtd~~~~~~~~~~l~~~d~r~~w~sgw~vPsLGL~WaN~v~tRl~l~r~~-- 311 (351)
T KOG1564|consen 237 HLFRLAGKLRQLA---SKFDLAVVCANQVTDRVETSDDLSGLRIGDYRYLWSSGWVVPSLGLTWANCVSTRLLLSRST-- 311 (351)
T ss_pred HHHHHHHHHHHHH---HhcCccEEEeeccccccccccccCCccccchhhccccccccccccceeccccceeeeeeecc--
Confidence 3344556666666 468999999999998755421 11111 57889999999999999999832
Q ss_pred ecCcc-cc-ccEEEEEEEecCCCCCCCeeEEEEEeCCCCC
Q 017792 233 KKGEE-TI-GSQIAVKIVKNKLAPPFKTAQFELEFGKGIS 270 (366)
Q Consensus 233 ~~~~~-~~-g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~ 270 (366)
+..+. .. ...++++|+-+.+.||. .+.|.|+ ..||.
T Consensus 312 k~~~sa~~~~~~R~l~VvySp~~p~~-~~~~~It-~eGI~ 349 (351)
T KOG1564|consen 312 KNCDSAVSRSAKRTLRVVYSPYLPPS-SCEFMIT-AEGIC 349 (351)
T ss_pred ccccchhhcccceEEEEEecCCCCCc-ceEEEEe-cceEe
Confidence 21111 11 22347999999988874 5788888 67764
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.5e-22 Score=180.73 Aligned_cols=206 Identities=20% Similarity=0.279 Sum_probs=145.6
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN 112 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~ 112 (366)
..++++||++.||.+|+ ||+|+|+++.|+|+||+|||+|+.+++......+++|+|++.++.... ..+.++|++...
T Consensus 3 ~~~~~~tGi~~LD~~l~-gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~ 81 (234)
T PRK06067 3 KKEIISTGNEELDRKLG-GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISD 81 (234)
T ss_pred CceEEecCCHHHHHhhC-CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhH
Confidence 46789999999999999 999999999999999999999999999888778999999999987764 234567776543
Q ss_pred c------eec---------CCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHH
Q 017792 113 L------LLA---------QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 177 (366)
Q Consensus 113 ~------~~~---------~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L 177 (366)
. .+. .....++++..+...+...+++++++||++++... .+ . ..+..++..+
T Consensus 82 ~~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~--~~----~-------~~~~~~l~~l 148 (234)
T PRK06067 82 FFLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATY--AE----E-------DDILNFLTEA 148 (234)
T ss_pred HHhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhc--CC----H-------HHHHHHHHHH
Confidence 2 111 12345678888888887778999999999977421 11 1 1122333322
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCC-
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPF- 256 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~- 256 (366)
..+++.++|+++++|....... . . ..+.+++|.+|.|+... .+. ..++.+.|.|.|..++.
T Consensus 149 -~~l~~~g~tvllt~~~~~~~~~--------~-~--~~~~~l~DgvI~L~~~~---~~~---~~~r~l~i~K~Rg~~~~~ 210 (234)
T PRK06067 149 -KNLVDLGKTILITLHPYAFSEE--------L-L--SRIRSICDVYLKLRAEQ---IGG---RYVKVLEVVKLRGARKTT 210 (234)
T ss_pred -HHHHhCCCEEEEEecCCcCCHH--------H-H--HHHHhheEEEEEEEeec---cCC---EEeEEEEEEhhcCCCCCC
Confidence 3334568999999996542110 0 0 12688999999998542 111 23447999999977553
Q ss_pred -CeeEEEEEeCCCCCch
Q 017792 257 -KTAQFELEFGKGISRE 272 (366)
Q Consensus 257 -~~~~~~i~~~~Gi~~~ 272 (366)
....|.|.-+.||...
T Consensus 211 ~~~~~~~I~~~~Gi~v~ 227 (234)
T PRK06067 211 GNIISFDVDPAFGIKII 227 (234)
T ss_pred CCEEEEEEcCCCCeEEE
Confidence 4568888734688644
|
|
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.8e-21 Score=174.87 Aligned_cols=203 Identities=23% Similarity=0.354 Sum_probs=140.7
Q ss_pred ChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCc-----ce
Q 017792 42 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN-----LL 114 (366)
Q Consensus 42 G~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~-----~~ 114 (366)
|++.||.+|+ ||+|+|++++|.|+||+|||+|+.+++......+..|+|++.|++.+. ..+..+|++.+. +.
T Consensus 1 Gi~~LD~~l~-gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~ 79 (224)
T TIGR03880 1 GIPGLDEMLG-GGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLY 79 (224)
T ss_pred CchhhHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeE
Confidence 7899999999 999999999999999999999999999988878889999999997764 445667775543 33
Q ss_pred ecCCC------CHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEE
Q 017792 115 LAQPD------CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTIL 188 (366)
Q Consensus 115 ~~~~~------~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tV 188 (366)
+.+.. ...++...+..++....++++||||++.+.+ .... + ...+ ..+..+.+.+++.|+|+
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~vVIDsls~l~~--~~~~---~----~~~r---~~l~~l~~~lk~~~~tv 147 (224)
T TIGR03880 80 IVRLDPSDFKTSLNRIKNELPILIKELGASRVVIDPISLLET--LFDD---D----AERR---TELFRFYSSLRETGVTT 147 (224)
T ss_pred EEecCHHHHHhhHHHHHHHHHHHHHHhCCCEEEEcChHHHhh--hcCC---H----HHHH---HHHHHHHHHHHhCCCEE
Confidence 33221 1334444555666677889999999998742 1111 0 1111 34555556667789999
Q ss_pred EEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCC-CCeeEEEEEeCC
Q 017792 189 IFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP-FKTAQFELEFGK 267 (366)
Q Consensus 189 I~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~-~~~~~~~i~~~~ 267 (366)
++++|.... +|.... -..++++||.+|.|+... .+. ....++.+.|+|+|...+ ....+|.|+ +.
T Consensus 148 ll~s~~~~~-------~~~~~~--~~~~~~l~D~vI~L~~~~---~~~-~~~~~r~l~v~K~Rg~~~~~~~~~~~i~-~~ 213 (224)
T TIGR03880 148 ILTSEADKT-------NVFASK--YGLIEYLADGVIILKYVR---NSD-LRDVRLAVEVVKMRRSKHSREIKPYEIT-DS 213 (224)
T ss_pred EEEEcccCC-------CCCccC--CCceEEEEeEEEEEeeee---ccc-CcceEEEEEEEEccCCCCCCceEEEEEc-CC
Confidence 999997642 010000 122799999999996321 111 112344689999998754 357789998 88
Q ss_pred CCCc
Q 017792 268 GISR 271 (366)
Q Consensus 268 Gi~~ 271 (366)
||..
T Consensus 214 Gi~v 217 (224)
T TIGR03880 214 GITV 217 (224)
T ss_pred cEEE
Confidence 8763
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.6e-21 Score=188.58 Aligned_cols=209 Identities=24% Similarity=0.259 Sum_probs=147.0
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEeCCCCCCHHH----Hhhcccc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHALDPSL----AETIGVK 109 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~-~~gg~vl~id~e~~~~~~~----~~~ig~~ 109 (366)
...++|||++.||.+++ |+.+|+++.|.|+||+|||+|+++++..+. ..+.+|+|++.|++..... +...++.
T Consensus 173 ~~~gi~tG~~~LD~~~~--G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl~~~~~~v~ 250 (421)
T TIGR03600 173 ELTGLSTGLPKLDRLTN--GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLASKSGIN 250 (421)
T ss_pred CCcceeCCChhHHHHhc--CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 46789999999999997 999999999999999999999999998776 5678899999998765322 2222332
Q ss_pred cC-------------------------cceecC--CCCHHHHHHHHHHHHhcC-CceEEEEecccccCCCCccCCccchh
Q 017792 110 TE-------------------------NLLLAQ--PDCGEQALSLVDTLIRSG-SVDVVVVDSVAALVPKGELDGEMGDA 161 (366)
Q Consensus 110 ~~-------------------------~~~~~~--~~~~e~~l~~~~~~~~~~-~~~lvviDsl~~l~~~~~l~~~~g~~ 161 (366)
.. ++++.. ..+++++...+..+.... .++++|||+++.+.+. .+ .+
T Consensus 251 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~---~~--~~- 324 (421)
T TIGR03600 251 TGNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPT---RG--RD- 324 (421)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCC---CC--CC-
Confidence 21 222322 257888888887766554 6999999999988632 11 11
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-eccCCceeeeeceEEEEEEEeceeecCccccc
Q 017792 162 HMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKGEETIG 240 (366)
Q Consensus 162 ~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g 240 (366)
+. ..+....+.|...+++++++||+++|.++.........|.. -..++..+++.||.++.+.|...+....+..+
T Consensus 325 -~~---~~~~~i~~~Lk~lAke~~i~Vi~lsQlnr~~~~r~~krp~lsdlr~Sg~Ieq~AD~v~~l~R~~~~~~~~~~~~ 400 (421)
T TIGR03600 325 -RN---EELGGISRGLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDADVIGLIHREGYYDAREPPAG 400 (421)
T ss_pred -HH---HHHHHHHHHHHHHHHHhCCcEEEecccCcchhhcCCCCCChHHHhhcCCccccCcEEEEeccccccCCccCCCC
Confidence 11 22333334444444678999999999988755322223322 24556779999999999999876543333223
Q ss_pred cEEEEEEEecCCCCCC
Q 017792 241 SQIAVKIVKNKLAPPF 256 (366)
Q Consensus 241 ~~~~l~v~K~r~~~~~ 256 (366)
...+.|.|||.++.+
T Consensus 401 -~~el~v~K~R~G~~g 415 (421)
T TIGR03600 401 -VAELILAKNRHGPTG 415 (421)
T ss_pred -ceEEEEECCCCCCCc
Confidence 347999999998774
|
Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. |
| >PRK09302 circadian clock protein KaiC; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-21 Score=194.83 Aligned_cols=209 Identities=20% Similarity=0.266 Sum_probs=150.7
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCH--HHHhhccccc
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDP--SLAETIGVKT 110 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~--~~~~~ig~~~ 110 (366)
..++++|||++.||.+|+ ||+|+|++++|+|+||+|||+|+.+++...... |.+|+|++.|++.+. ..+..+|+++
T Consensus 8 ~~~~ri~TGI~~LD~~l~-GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~ 86 (509)
T PRK09302 8 PGIEKLPTGIEGFDDITH-GGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDL 86 (509)
T ss_pred CCCccccCCchhHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCH
Confidence 367899999999999999 999999999999999999999999999887776 889999999998775 4456678765
Q ss_pred Ccc------eecC------------CCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHH
Q 017792 111 ENL------LLAQ------------PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ 172 (366)
Q Consensus 111 ~~~------~~~~------------~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~ 172 (366)
..+ .+.. ....++++..+...+...+++.+||||++.+.. .+.. . ..+..
T Consensus 87 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~--~~d~----~------~~~r~ 154 (509)
T PRK09302 87 QKLIDEGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFS--GFSN----E------AVVRR 154 (509)
T ss_pred HHHhhCCeEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHh--hccC----H------HHHHH
Confidence 432 2111 123466777777777778899999999998752 1111 0 11234
Q ss_pred HHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCC
Q 017792 173 ALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKL 252 (366)
Q Consensus 173 ~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~ 252 (366)
.+.++...+++.|+|+|+++|....... .... ....++||.+|.|+... .+. ...+.+.|.|+|.
T Consensus 155 ~l~~L~~~Lk~~g~TvLlt~~~~~~~~~-------~~~~--~~~~~laDgVI~L~~~~---~~~---~~~R~l~I~K~Rg 219 (509)
T PRK09302 155 ELRRLFAWLKQKGVTAVITGERGDEYGP-------LTRY--GVEEFVSDCVIILRNRL---EGE---KRTRTLRILKYRG 219 (509)
T ss_pred HHHHHHHHHHhCCCEEEEEECCccCcCC-------cccc--CceEEEeeEEEEEeEEc---cCC---eEEEEEEEEECCC
Confidence 5666767777889999999997643111 0100 12578999999998543 121 2234799999997
Q ss_pred CCCC-CeeEEEEEeCCCCCc
Q 017792 253 APPF-KTAQFELEFGKGISR 271 (366)
Q Consensus 253 ~~~~-~~~~~~i~~~~Gi~~ 271 (366)
.+.. ...+|.|. +.||..
T Consensus 220 ~~~~~~~~~f~I~-~~Gi~v 238 (509)
T PRK09302 220 TTHGKNEYPFTIT-EDGISV 238 (509)
T ss_pred CCcCCccEEEEEC-CCcEEE
Confidence 6543 35678886 777664
|
|
| >PHA02542 41 41 helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=186.57 Aligned_cols=242 Identities=16% Similarity=0.139 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 017792 7 ALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG 86 (366)
Q Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g 86 (366)
.+..+++.+++.+... .....++|||++.||.+++ ||+.+|+++.|.|+||.|||||+++++..+...|
T Consensus 150 ~~~~~~~~ie~~~~~~----------~~~~~gi~TG~~~LD~~t~-gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g 218 (473)
T PHA02542 150 VGHDYFEDYEERYDSY----------QSKANKIPFKLEILNKITK-GGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQG 218 (473)
T ss_pred HHHHHHHHHHHHHhhc----------cCCCCccCCCcHHHHHhcc-CCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcC
Confidence 4455666666643210 1236789999999999998 8999999999999999999999999999988778
Q ss_pred CeEEEEeCCCCCCHH----HHhhcccccC-----------------------cceec----CCCCHHHHHHHHHHHHhcC
Q 017792 87 GYCVFIDAEHALDPS----LAETIGVKTE-----------------------NLLLA----QPDCGEQALSLVDTLIRSG 135 (366)
Q Consensus 87 g~vl~id~e~~~~~~----~~~~ig~~~~-----------------------~~~~~----~~~~~e~~l~~~~~~~~~~ 135 (366)
..|+|++.|++.+.. .+...++..+ ++.+. ...++.++...++.+....
T Consensus 219 ~~Vl~fSLEM~~~ql~~Rl~a~~~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~ 298 (473)
T PHA02542 219 YNVLYISMEMAEEVIAKRIDANLLDVSLDDIDDLSKAEYKAKMEKLRSKTQGKLIIKQYPTGGAHAGHFRALLNELKLKK 298 (473)
T ss_pred CcEEEEeccCCHHHHHHHHHHHHcCCCHHHHhhcCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHhc
Confidence 899999999886632 1122222221 22222 2246777777777766544
Q ss_pred C--ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-eccC
Q 017792 136 S--VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCG 212 (366)
Q Consensus 136 ~--~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~g 212 (366)
. +++||||+++.+.+ ........+ +......+++.|+.|+ ++.+|+||+++|.++..... .+|.. -..+
T Consensus 299 g~~~dlVvIDYLqL~~~-~~~~~~~~n--r~~ei~~Isr~LK~lA---kel~vpVi~lsQLnR~~e~r--~dP~lsDLre 370 (473)
T PHA02542 299 NFKPDVIIVDYLGICAS-SRLRVSSEN--SYTYVKAIAEELRGLA---VEHDVVVWTAAQTTRSGWDS--SDVDMSDTAE 370 (473)
T ss_pred CCCCCEEEEechhhccC-CcccCCCCC--hHHHHHHHHHHHHHHH---HHhCCeEEEEEeeCcccccc--CCCcchhccc
Confidence 3 89999999988752 111111111 1122233444555555 67899999999999986542 22322 2455
Q ss_pred CceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCCCCch
Q 017792 213 GNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRE 272 (366)
Q Consensus 213 G~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~ 272 (366)
...+++.||.++.|.|...+.+ .+ ...+.+.|||+++.+....+.+.|.....++
T Consensus 371 SG~IEqdAD~vl~l~r~~~~~~----~~-~~eliv~KnR~G~~g~~g~v~l~f~~~~~~F 425 (473)
T PHA02542 371 SAGLPATADFMLAVIETEELAQ----MG-QQLVKQLKSRYGDKNKFNKFLMGVDKGNQRW 425 (473)
T ss_pred ccchHhhcCEEEEEecCccccc----CC-eEEEEEecCCCCCCCCceEEEEEEECCcCcc
Confidence 6679999999999998654421 12 3478999999999876567778776554433
|
|
| >PRK09302 circadian clock protein KaiC; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.7e-21 Score=192.49 Aligned_cols=208 Identities=21% Similarity=0.286 Sum_probs=156.1
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN 112 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~ 112 (366)
..++++||++.||.+|+ ||+|+|++++|.|+||+|||+|+.+++......+.+|+|++++++.+. ..++.+|++.+.
T Consensus 251 ~~~~~~tGi~~lD~~l~-GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~ 329 (509)
T PRK09302 251 SNERISSGVPDLDEMLG-GGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEK 329 (509)
T ss_pred ccccccCCcHHHHHhhc-CCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHH
Confidence 46789999999999999 999999999999999999999999999999888999999999987664 345678876543
Q ss_pred c------eec--C--CCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhh
Q 017792 113 L------LLA--Q--PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS 182 (366)
Q Consensus 113 ~------~~~--~--~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~ 182 (366)
. .+. . ....++.+..+...+...+++++||||++.+.... +. ..+.+.++.|...++
T Consensus 330 ~~~~g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~-------~~------~~~~~~l~~l~~~~k 396 (509)
T PRK09302 330 MEEKGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALARGG-------SL------NEFRQFVIRLTDYLK 396 (509)
T ss_pred HhhcCCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhC-------CH------HHHHHHHHHHHHHHH
Confidence 2 111 1 23457777788887878889999999999986211 10 123456777778888
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCC-CCCeeEE
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAP-PFKTAQF 261 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~-~~~~~~~ 261 (366)
+.|+|+|+++|.....+. +..+. ..+.++||.+|.|+.... .+ ..++.+.|+|.|..+ +....+|
T Consensus 397 ~~~~t~l~t~~~~~~~g~-----~~~~~---~~~~~l~D~vI~L~~~~~--~~----~~~R~l~I~K~Rg~~~~~~~~~f 462 (509)
T PRK09302 397 SEEITGLFTNLTPDFMGS-----HSITE---SHISSLTDTWILLQYVEI--NG----EMNRALYVLKMRGSWHSNQIREF 462 (509)
T ss_pred hCCCeEEEEeccccccCC-----CCCCc---CceEEeeeEEEEEEEeec--CC----eeEEEEEEEEcCCCCCCCceEEE
Confidence 999999999997653211 11111 128999999999986431 11 234479999999765 3457889
Q ss_pred EEEeCCCCCc
Q 017792 262 ELEFGKGISR 271 (366)
Q Consensus 262 ~i~~~~Gi~~ 271 (366)
.|+ +.|+..
T Consensus 463 ~It-~~Gi~v 471 (509)
T PRK09302 463 VIT-DKGIHI 471 (509)
T ss_pred EEe-CCcEEE
Confidence 998 889864
|
|
| >PRK05748 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=187.13 Aligned_cols=224 Identities=15% Similarity=0.178 Sum_probs=153.1
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCCCCCCHHHHhhc----ccc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHALDPSLAETI----GVK 109 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e~~~~~~~~~~i----g~~ 109 (366)
...++|||++.||.+++ |+++|+++.|.|+||+|||+|+++++..+.. .+..|+|++.|++......+-+ +++
T Consensus 182 ~~~gi~TG~~~LD~~~~--G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~l~~~~~v~ 259 (448)
T PRK05748 182 DITGIPTGFTDLDKMTS--GLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRMLCAEGNID 259 (448)
T ss_pred CCCCccCChHHHHHhcC--CCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHhcCCC
Confidence 46789999999999986 9999999999999999999999999988764 5778999999988664222111 111
Q ss_pred cC-------------------------cceec--CCCCHHHHHHHHHHHHhcC-CceEEEEecccccCCCCccCCccchh
Q 017792 110 TE-------------------------NLLLA--QPDCGEQALSLVDTLIRSG-SVDVVVVDSVAALVPKGELDGEMGDA 161 (366)
Q Consensus 110 ~~-------------------------~~~~~--~~~~~e~~l~~~~~~~~~~-~~~lvviDsl~~l~~~~~l~~~~g~~ 161 (366)
.. ++++. ...++.++...+..+.... +++++|||+++.+.... .. ++.
T Consensus 260 ~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~-~~---~~~ 335 (448)
T PRK05748 260 AQRLRTGQLTDDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSG-RS---GEN 335 (448)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCC-CC---CcC
Confidence 11 12221 2357888888888877765 79999999999875211 11 111
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-eccCCceeeeeceEEEEEEEeceeecCccccc
Q 017792 162 HMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKGEETIG 240 (366)
Q Consensus 162 ~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g 240 (366)
....+....+.|...+++.+|+||+++|.++..+......|.. -..++..+++.||.+++|.+...+....+..+
T Consensus 336 ----r~~~i~~i~~~LK~lAke~~i~vi~lsQlnr~~~~r~~k~p~lsdlr~Sg~Ieq~AD~v~~l~r~~~~~~~~~~~~ 411 (448)
T PRK05748 336 ----RQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGSIEQDADIVAFLYRDDYYDEETENKN 411 (448)
T ss_pred ----HHHHHHHHHHHHHHHHHHhCCeEEEecccChhHhhcCCCCCChHHHHhhcchhcCCCEEEEEecccccCccccCCC
Confidence 1123334444555555778999999999998654321122311 13445669999999999998876543332233
Q ss_pred cEEEEEEEecCCCCCCCeeEEEEEeCCCCCch
Q 017792 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRE 272 (366)
Q Consensus 241 ~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~ 272 (366)
...+.|.|||.++++ .+.+.|.....++
T Consensus 412 -~~e~~v~K~R~G~~g---~~~~~~~~~~~~f 439 (448)
T PRK05748 412 -TIEIIIAKQRNGPVG---TVELAFQKEYNKF 439 (448)
T ss_pred -ceEEEEeccCCCCCc---eEEEEEeCCCCcc
Confidence 347899999999874 4566665554443
|
|
| >PRK08760 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=187.13 Aligned_cols=223 Identities=19% Similarity=0.172 Sum_probs=153.1
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCCCCCCHHHHhhc----ccc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHALDPSLAETI----GVK 109 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e~~~~~~~~~~i----g~~ 109 (366)
...++|||++.||.+++ |+.+|+++.|.|+||+|||+|+++++..+.. .+.+|+|++.|++..+...+-+ +++
T Consensus 208 ~~~Gi~TG~~~LD~~t~--G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~~s~i~ 285 (476)
T PRK08760 208 NITGLPTGYNDFDAMTA--GLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSNGRIN 285 (476)
T ss_pred CCCcccCCcHHHHHHhc--CCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHhhCCCc
Confidence 46789999999999886 7999999999999999999999999988864 4678999999987653221111 111
Q ss_pred cC-------------------------cceec--CCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhh
Q 017792 110 TE-------------------------NLLLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 110 ~~-------------------------~~~~~--~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
.. ++++. ...+++++...+..+....++++||||+++.+..... . ..
T Consensus 286 ~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~~~~~--~----~~ 359 (476)
T PRK08760 286 AQRLRTGALEDEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPGN--S----EN 359 (476)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcCCCCC--C----cc
Confidence 11 12222 2347888888888887777899999999987752111 1 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-eccCCceeeeeceEEEEEEEeceeecC-ccccc
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKG-EETIG 240 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~gG~~l~~~ad~~i~l~~~~~~~~~-~~~~g 240 (366)
+ ...+....+.|...+++++|+||+++|+++..+...-..|.. -..++..|++.||.+++|.|...+... .+..|
T Consensus 360 r---~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R~~~y~~~~~~~~~ 436 (476)
T PRK08760 360 R---ATEISEISRSLKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRESGAIEQDADMIVFIYRDDYYNKENSPDKG 436 (476)
T ss_pred c---HHHHHHHHHHHHHHHHHhCCEEEEeeccCccccccCCCCCCHHHHhhccchhcCCCEEEEEechhhcccccccCCC
Confidence 1 122333344444444678999999999998765421222321 134567799999999999987765433 22223
Q ss_pred cEEEEEEEecCCCCCCCeeEEEEEeCCCCCch
Q 017792 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRE 272 (366)
Q Consensus 241 ~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~ 272 (366)
...+.|.|||.+++ ..+.+.|.....++
T Consensus 437 -~~eliiaKnR~G~~---g~~~l~f~~~~~~f 464 (476)
T PRK08760 437 -LAEIIIGKHRGGPT---GSCKLKFFGEYTRF 464 (476)
T ss_pred -ceEEEEEccCCCCC---ceEEEEEecCCCce
Confidence 34789999999987 45666665555444
|
|
| >TIGR00665 DnaB replicative DNA helicase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=186.62 Aligned_cols=220 Identities=17% Similarity=0.181 Sum_probs=150.2
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCCCCCCHHHHh----hcccc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHALDPSLAE----TIGVK 109 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e~~~~~~~~~----~ig~~ 109 (366)
...++|||++.||.+++ |+++|+++.|.|+||+|||+|+++++..+.. .+..|+|++.|++......+ ..+++
T Consensus 174 ~~~gi~tG~~~LD~~~~--G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~~~~~~~v~ 251 (434)
T TIGR00665 174 GITGVPTGFTDLDKLTS--GLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRMLSSESRVD 251 (434)
T ss_pred CCCcccCCchhhHhhcC--CCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHHHHHhcCCC
Confidence 46789999999999986 9999999999999999999999999988765 57789999999876542211 11221
Q ss_pred cC-------------------------cceec--CCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhh
Q 017792 110 TE-------------------------NLLLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 110 ~~-------------------------~~~~~--~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
.. ++++. ...+++++...+..+....+++++|||+++.+..... . ..
T Consensus 252 ~~~~~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~i~~~~~-~---~~-- 325 (434)
T TIGR00665 252 SQKLRTGKLSDEDWEKLTSAAGKLSEAPLYIDDTPGLTITELRAKARRLKREHGLGLIVIDYLQLMSGSGR-S---EN-- 325 (434)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCC-C---CC--
Confidence 10 12221 2347888888888887777899999999988752111 1 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-eccCCceeeeeceEEEEEEEeceeecCcccccc
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKGEETIGS 241 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~ 241 (366)
....+....+.|...+++++|+||+++|.++..+......|.. -..++..+++.||.++.|.+...+....+..+
T Consensus 326 ---r~~~i~~i~~~Lk~lA~e~~i~vi~lsqlnr~~~~r~~~~p~lsdlr~Sg~ieq~aD~vi~l~r~~~~~~~~~~~~- 401 (434)
T TIGR00665 326 ---RQQEVSEISRSLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRESGSIEQDADIVMFLYRDEYYNPDSEDKG- 401 (434)
T ss_pred ---HHHHHHHHHHHHHHHHHHhCCeEEEEeccCcchhccCCCCCChHHHhhccchhhcCCEEEEeccccccCCCcCCCC-
Confidence 1122333344444445678999999999988654311122211 23455679999999999998765543322223
Q ss_pred EEEEEEEecCCCCCCCeeEEEEEeCCCC
Q 017792 242 QIAVKIVKNKLAPPFKTAQFELEFGKGI 269 (366)
Q Consensus 242 ~~~l~v~K~r~~~~~~~~~~~i~~~~Gi 269 (366)
.+.+.|.|||.++++ .+.+.|....
T Consensus 402 ~~~l~v~KnR~G~~g---~~~l~~~~~~ 426 (434)
T TIGR00665 402 IAEIIIAKQRNGPTG---TVKLAFQGEY 426 (434)
T ss_pred ceEEEEecCCCCCCC---eEEEEEecCC
Confidence 358999999998874 4455554443
|
This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. |
| >PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.8e-21 Score=176.28 Aligned_cols=221 Identities=23% Similarity=0.243 Sum_probs=146.7
Q ss_pred cccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCHHH----HhhcccccC-
Q 017792 38 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSL----AETIGVKTE- 111 (366)
Q Consensus 38 ~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~~~----~~~ig~~~~- 111 (366)
+||||++.||.++| |+.+|+++.|.|+||+|||+|+++++..+... +..|+|++.|++..... +...++...
T Consensus 1 Gi~TG~~~LD~~lg--G~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~ 78 (259)
T PF03796_consen 1 GIPTGFPALDRLLG--GLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNK 78 (259)
T ss_dssp SB-SSTHHHHHHHS--SB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHH
T ss_pred CCCCChHHHHHHhc--CCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhh
Confidence 48999999999997 99999999999999999999999999999887 57999999998765322 111122111
Q ss_pred ------------------------cceec--CCCCHHHHHHHHHHHHhc-CCceEEEEecccccCCCCccCCccchhhHH
Q 017792 112 ------------------------NLLLA--QPDCGEQALSLVDTLIRS-GSVDVVVVDSVAALVPKGELDGEMGDAHMA 164 (366)
Q Consensus 112 ------------------------~~~~~--~~~~~e~~l~~~~~~~~~-~~~~lvviDsl~~l~~~~~l~~~~g~~~~~ 164 (366)
.+.+. +..+++++...+..+... .++++|+||++..+.+..... ...
T Consensus 79 i~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~---~~~--- 152 (259)
T PF03796_consen 79 IRSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSD---NRR--- 152 (259)
T ss_dssp HHCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSS---CCH---
T ss_pred hhccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCC---CHH---
Confidence 11221 245788888888877666 789999999999887533111 111
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-eccCCceeeeeceEEEEEEEeceeecCccccccEE
Q 017792 165 MQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243 (366)
Q Consensus 165 ~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~ 243 (366)
.....++..|+.|+ ++++++||+++|.++......-..|.. -..++..+++.||.++.|.+.+......+.. ...
T Consensus 153 ~~~~~i~~~Lk~lA---~~~~i~vi~~sQlnr~~~~~~~~~p~l~dl~~sg~Ie~~AD~vl~l~r~~~~~~~~~~~-~~~ 228 (259)
T PF03796_consen 153 QEIGEISRELKALA---KELNIPVIALSQLNREAEDREDKRPSLSDLRESGAIEQDADVVLFLHRDEKYDEDRDDK-GEA 228 (259)
T ss_dssp HHHHHHHHHHHHHH---HHHTSEEEEEEEBSGGGGGSSSCS--HHHHCSTSSHHHH-SEEEEEEEHCHCHCCSSCT-TEE
T ss_pred HHHHHHHHHHHHHH---HHcCCeEEEccccChhhhcccccccchhhhhhhHHHHHHHhhhhhhccchhhccccCCC-CeE
Confidence 22333455565555 567999999999988754321112321 1356677999999999999876544432222 255
Q ss_pred EEEEEecCCCCCCCeeEEEEEeCCCCCchh
Q 017792 244 AVKIVKNKLAPPFKTAQFELEFGKGISRES 273 (366)
Q Consensus 244 ~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~ 273 (366)
.+.|.|||.++. ..+.+.|.....++.
T Consensus 229 ~l~v~KnR~G~~---g~v~~~f~~~~~~f~ 255 (259)
T PF03796_consen 229 ELIVAKNRNGPT---GTVPLRFNPETSRFT 255 (259)
T ss_dssp EEEEEEESSS-----EEEEEEEETTTTEEE
T ss_pred EEEEEecCCCCC---ceEEEEEECCCCeEe
Confidence 799999998877 456666655554443
|
Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C .... |
| >PRK05595 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-20 Score=185.11 Aligned_cols=223 Identities=17% Similarity=0.164 Sum_probs=152.7
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEeCCCCCCHHH----Hhhcccc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHALDPSL----AETIGVK 109 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~-~~gg~vl~id~e~~~~~~~----~~~ig~~ 109 (366)
...++|||++.||.+++ |+.+|+++.|.|+||+|||+|+++++..+. ..|.+|+|++.|++..+.. +...+++
T Consensus 180 ~~~gi~tg~~~ld~~~~--G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R~~a~~~~v~ 257 (444)
T PRK05595 180 ETTGVASGFRELDAKTS--GFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYKLLCSEANVD 257 (444)
T ss_pred CCCcccCChHHHHHhcC--CCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHhcCCC
Confidence 46789999999999885 999999999999999999999999998754 5678899999998765322 2222222
Q ss_pred cC-------------------------cceec--CCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhh
Q 017792 110 TE-------------------------NLLLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 110 ~~-------------------------~~~~~--~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
.. ++++. ...++.++...+..+....++++||||+++.+.+.... ..
T Consensus 258 ~~~~~~~~l~~~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDylql~~~~~~~------~~ 331 (444)
T PRK05595 258 MLRLRTGNLEDKDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDYLQLMSGGKGS------ES 331 (444)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeHHHhccCCCCC------cc
Confidence 11 12222 23467888888887777778999999999877521110 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-eccCCceeeeeceEEEEEEEeceeecCcccccc
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKGEETIGS 241 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~ 241 (366)
+......++..|+.|+ ++.+|+||+++|+++......-..|.. -..++.++++.||.++.+.|...+....+..|.
T Consensus 332 r~~~v~~is~~LK~lA---ke~~i~vi~lsQLnR~~e~r~~~rP~lsdlr~Sg~Ieq~AD~vl~l~r~~~~~~~~~~~~~ 408 (444)
T PRK05595 332 RQQEVSEISRSIKALA---KEMECPVIALSQLSRAPEQRADHRPMLSDLRESGSIEQDADVVMFLYRDEYYNKETEDKNV 408 (444)
T ss_pred HHHHHHHHHHHHHHHH---HHhCCeEEEeeccCcchhccCCCCCchhhhhhhcccccCCCEEEEEecccccccccCCCCc
Confidence 1112223444455444 678999999999998765321112321 244566799999999999998765433332343
Q ss_pred EEEEEEEecCCCCCCCeeEEEEEeCCCCCch
Q 017792 242 QIAVKIVKNKLAPPFKTAQFELEFGKGISRE 272 (366)
Q Consensus 242 ~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~ 272 (366)
..+.|.|||.++. ..+.+.|.....++
T Consensus 409 -~e~iv~K~R~G~~---g~~~~~~~~~~~~f 435 (444)
T PRK05595 409 -AECIIAKQRNGPT---GTVKLAWLGQYSKF 435 (444)
T ss_pred -eEEEEEccCCCCC---ceEEEEEecCCCcc
Confidence 4799999999887 45666665555444
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=175.83 Aligned_cols=207 Identities=16% Similarity=0.166 Sum_probs=141.3
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCHHH----Hhhccc
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSL----AETIGV 108 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~~~----~~~ig~ 108 (366)
-+...+|||++.||.++| |+++|+++.|.|++|+|||||+.+++..+... +..|+|++.|+...... +...++
T Consensus 8 ~~~~~~~tg~~~Ld~~~g--G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~~~ 85 (271)
T cd01122 8 LSNEEVWWPFPVLNKLTK--GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGK 85 (271)
T ss_pred ccccCCCCCcceeeeeeE--EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHHHhCC
Confidence 345599999999999885 99999999999999999999999999988776 88999999998654321 111132
Q ss_pred ccC------------------------cceecCC---CCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchh
Q 017792 109 KTE------------------------NLLLAQP---DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDA 161 (366)
Q Consensus 109 ~~~------------------------~~~~~~~---~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~ 161 (366)
.+. ++.+... .+.++++..+..++...+++++|||+++.+..... .. .+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~-~~--~~- 161 (271)
T cd01122 86 RLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDER-AS--GD- 161 (271)
T ss_pred CcccCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhccCC-Cc--hh-
Confidence 221 1222221 26788888888887778899999999999863211 10 11
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccccc---CCCCee-eccCCceeeeeceEEEEEEEeceeecCcc
Q 017792 162 HMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFG---FGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKGEE 237 (366)
Q Consensus 162 ~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~---~~~~~~-~~~gG~~l~~~ad~~i~l~~~~~~~~~~~ 237 (366)
....+...++.|...++++++||++++|.++...... -..|.. ...|+..+++.||.+|.|.+.... + .
T Consensus 162 ----~~~~~~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~r~~~~-e--~ 234 (271)
T cd01122 162 ----ERKALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALERNQQA-E--L 234 (271)
T ss_pred ----HHHHHHHHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEEecCcc-c--c
Confidence 1122334455555555778999999999987532100 011222 245666799999999999975421 0 1
Q ss_pred ccccEEEEEEEecCCC
Q 017792 238 TIGSQIAVKIVKNKLA 253 (366)
Q Consensus 238 ~~g~~~~l~v~K~r~~ 253 (366)
.....+.+.+.|+|.+
T Consensus 235 ~~~~~~~i~v~K~R~~ 250 (271)
T cd01122 235 DERNTTYLRILKNRFT 250 (271)
T ss_pred ccCCcEEEEEEeeccC
Confidence 1123447999999986
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK09165 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-20 Score=186.40 Aligned_cols=227 Identities=22% Similarity=0.270 Sum_probs=155.0
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc---------------CCeEEEEeCCCCCC
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ---------------GGYCVFIDAEHALD 99 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~---------------gg~vl~id~e~~~~ 99 (366)
...++|||++.||.++| |+.+|+++.|.|+||+|||||+++++..+... +..|+|++.|++..
T Consensus 196 ~~~gi~TG~~~LD~~~g--G~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ 273 (497)
T PRK09165 196 HLSGISTGLRDLDSKLG--GLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAE 273 (497)
T ss_pred CCCcccCChHHHhhhcC--CCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHH
Confidence 46789999999999996 89999999999999999999999999887643 56899999999876
Q ss_pred HHH----HhhcccccCc-------------------------ceec--CCCCHHHHHHHHHHHHhcCCceEEEEeccccc
Q 017792 100 PSL----AETIGVKTEN-------------------------LLLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVAAL 148 (366)
Q Consensus 100 ~~~----~~~ig~~~~~-------------------------~~~~--~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l 148 (366)
+.. +...++...+ +++. ...+++++...+..+....+++++|||+++.+
T Consensus 274 ql~~R~la~~s~v~~~~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvIDyLqli 353 (497)
T PRK09165 274 QLATRILSEQSEISSSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVDYLQLI 353 (497)
T ss_pred HHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhc
Confidence 422 2222332221 2222 23478888888888877778999999999977
Q ss_pred CCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeee-ccCCceeeeeceEEEEEE
Q 017792 149 VPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEV-TCGGNALKFYASVRLNIK 227 (366)
Q Consensus 149 ~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~-~~gG~~l~~~ad~~i~l~ 227 (366)
..... .. ++ .+......++..|+.| +++.+|+||+++|+++......-..|... ..++..|++.||.+++|.
T Consensus 354 ~~~~~-~~--~~-~r~~ev~~is~~LK~l---Akel~ipVi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 426 (497)
T PRK09165 354 RGSSK-RS--SD-NRVQEISEITQGLKAL---AKELNIPVIALSQLSRQVEQRDDKRPQLSDLRESGSIEQDADVVMFVY 426 (497)
T ss_pred cCCCC-CC--CC-chHHHHHHHHHHHHHH---HHHhCCeEEEeecccchhhccCCCCCchhhhhhccchhccCCEEEEEe
Confidence 53211 00 11 1112233344444444 46789999999999988654212234332 456777999999999999
Q ss_pred EeceeecCccc----------------cccEEEEEEEecCCCCCCCeeEEEEEeCCCCCchh
Q 017792 228 RIGLVKKGEET----------------IGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRES 273 (366)
Q Consensus 228 ~~~~~~~~~~~----------------~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~ 273 (366)
|...+...... ......+.|.|||.++. ..+.+.|.....++.
T Consensus 427 R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ivaKnR~G~~---g~~~~~f~~~~~~f~ 485 (497)
T PRK09165 427 REEYYLKRKEPREGTPKHEEWQEKMEKVHNKAEVIIAKQRHGPT---GTVKLAFESEFTRFG 485 (497)
T ss_pred ehhhhccccccccccchhhhhhhhhcccCCceEEEEeccCCCCC---eeEEEEEecCCCccc
Confidence 87655321100 01234788999999887 456666655554443
|
|
| >PRK05636 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.2e-20 Score=184.24 Aligned_cols=222 Identities=18% Similarity=0.166 Sum_probs=154.2
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCCCCCCHHHHhh----cccc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHALDPSLAET----IGVK 109 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e~~~~~~~~~~----ig~~ 109 (366)
...++|||++.||.+++ |+.+|+++.|.|+||+|||+|+++++..+.. .+..|+|++.|++..+...+. .++.
T Consensus 244 ~~~Gi~TG~~~LD~~t~--Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~s~v~ 321 (505)
T PRK05636 244 IATGIPTGFKDLDDLTN--GLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAEAEVR 321 (505)
T ss_pred CCCceecChHHHhhhcC--CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHhcCCC
Confidence 45789999999999875 9999999999999999999999999988764 467899999998765322111 1111
Q ss_pred c------------------------C-cceec--CCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhh
Q 017792 110 T------------------------E-NLLLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 110 ~------------------------~-~~~~~--~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
. + ++++. ...++.++...++.+.....+++||||+++.+.+.... . .
T Consensus 322 ~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~~~~~~----~--~ 395 (505)
T PRK05636 322 LSDMRGGKMDEDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVDYLQLMSSGKRV----E--S 395 (505)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCCC----C--c
Confidence 1 1 22232 23478888888888777778999999999987531111 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeee-ccCCceeeeeceEEEEEEEeceeecCcccccc
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEV-TCGGNALKFYASVRLNIKRIGLVKKGEETIGS 241 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~-~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~ 241 (366)
....+....+.|...+++.+|+||+++|+++......-..|... ..++..|++.||.+++|.|...+....+..|.
T Consensus 396 ---r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~vl~l~R~~~y~~~~~~~g~ 472 (505)
T PRK05636 396 ---RQQEVSEFSRQLKLLAKELDVPLIAISQLNRGPESRTDKRPQLADLRESGSLEQDADMVMLLYRPDSQDKDDERAGE 472 (505)
T ss_pred ---HHHHHHHHHHHHHHHHHHhCCeEEEEeecCccccccCCCCCcHHHHhhcccccccCCEEEEEecccccCCccCCCCc
Confidence 11234444455555557789999999999988654212223222 45567799999999999998766543333343
Q ss_pred EEEEEEEecCCCCCCCeeEEEEEeCCCCCc
Q 017792 242 QIAVKIVKNKLAPPFKTAQFELEFGKGISR 271 (366)
Q Consensus 242 ~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~ 271 (366)
..+.|.|||.++. ..+.+.|.....+
T Consensus 473 -~elivaK~RnG~~---Gtv~l~f~~~~~r 498 (505)
T PRK05636 473 -ADIILAKHRGGPI---DTVQVAHQLHYSR 498 (505)
T ss_pred -eEEEEecCCCCCC---ceEEEEeecCccc
Confidence 4789999999887 4566666555443
|
|
| >PRK08006 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=181.05 Aligned_cols=223 Identities=17% Similarity=0.206 Sum_probs=152.5
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCCCCCCHHHHhhc----ccc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHALDPSLAETI----GVK 109 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e~~~~~~~~~~i----g~~ 109 (366)
...++|||++.||.+++ |+.+|+++.|.|.||.|||+|+++++..+.. .+.+|+|++.|++..+...+-+ ++.
T Consensus 203 ~~~Gi~TG~~~LD~~~~--Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rlla~~~~v~ 280 (471)
T PRK08006 203 GVTGVNTGYDDLNKKTA--GLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASLSRVD 280 (471)
T ss_pred CCCcccCCCHHHHHhhc--CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHhcCCC
Confidence 46789999999999986 9999999999999999999999999988764 5778999999987553211111 111
Q ss_pred -------------------------c-CcceecC--CCCHHHHHHHHHHHHhcC-CceEEEEecccccCCCCccCCccch
Q 017792 110 -------------------------T-ENLLLAQ--PDCGEQALSLVDTLIRSG-SVDVVVVDSVAALVPKGELDGEMGD 160 (366)
Q Consensus 110 -------------------------~-~~~~~~~--~~~~e~~l~~~~~~~~~~-~~~lvviDsl~~l~~~~~l~~~~g~ 160 (366)
. .++++.. ..++.++...++.+.... .+++||||+++.+.... .. ..
T Consensus 281 ~~~i~~~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~-~~---~~ 356 (471)
T PRK08006 281 QTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPS-LS---DN 356 (471)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCC-CC---CC
Confidence 0 1223322 357888888887776654 68999999999875211 11 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-eccCCceeeeeceEEEEEEEeceeecCcccc
Q 017792 161 AHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKGEETI 239 (366)
Q Consensus 161 ~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~ 239 (366)
+......+++.|+.|+ ++.+|+||+++|+++..+...-..|.. -..++..|++-||.+++|.|...+....+..
T Consensus 357 --r~~ei~~isr~LK~lA---kel~ipVi~LsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~~~~~ 431 (471)
T PRK08006 357 --RTLEIAEISRSLKALA---KELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLK 431 (471)
T ss_pred --cHHHHHHHHHHHHHHH---HHhCCeEEEEEecCccccccCCCCCchhhhhhcCcccccCCEEEEEecccccccccCCC
Confidence 1122233444444444 678999999999999865422223322 2445667999999999999987665433333
Q ss_pred ccEEEEEEEecCCCCCCCeeEEEEEeCCCCCch
Q 017792 240 GSQIAVKIVKNKLAPPFKTAQFELEFGKGISRE 272 (366)
Q Consensus 240 g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~ 272 (366)
|. ..+.|.|||.++. ..+.+.|.....++
T Consensus 432 g~-~elivaKnR~G~~---G~v~l~f~~~~~~f 460 (471)
T PRK08006 432 GI-AEIIIGKQRNGPI---GTVRLTFNGQWSRF 460 (471)
T ss_pred Cc-eEEEEecccCCCC---ceEEEEEccCcccc
Confidence 43 4788999999887 45566665554433
|
|
| >PRK07004 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.3e-20 Score=182.13 Aligned_cols=225 Identities=18% Similarity=0.182 Sum_probs=154.6
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEeCCCCCCHHHHhhc----cc
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHALDPSLAETI----GV 108 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~-~~gg~vl~id~e~~~~~~~~~~i----g~ 108 (366)
....++|||++.||.+++ |+++|+++.|.|.||+|||+|+++++..+. ..+..|+|++.|++..+...+-+ ++
T Consensus 191 ~~~~gi~TG~~~LD~~t~--G~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~R~la~~~~v 268 (460)
T PRK07004 191 SDVTGTPTGFVDLDRMTS--GMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMRMLGSVGRL 268 (460)
T ss_pred CCCCCccCCcHHhccccc--CCCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhhcCC
Confidence 346799999999999986 999999999999999999999999998775 45778999999988664222211 11
Q ss_pred ccC-------------------------cceec--CCCCHHHHHHHHHHHHhc-CCceEEEEecccccCCCCccCCccch
Q 017792 109 KTE-------------------------NLLLA--QPDCGEQALSLVDTLIRS-GSVDVVVVDSVAALVPKGELDGEMGD 160 (366)
Q Consensus 109 ~~~-------------------------~~~~~--~~~~~e~~l~~~~~~~~~-~~~~lvviDsl~~l~~~~~l~~~~g~ 160 (366)
+.+ ++++. +..++.++...+..+.+. +.+++||||.++.+.+.. . ++
T Consensus 269 ~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~--~---~~ 343 (460)
T PRK07004 269 DQHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSS--Q---GE 343 (460)
T ss_pred CHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCC--C---CC
Confidence 111 12222 234677888877777654 358999999998886321 1 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-eccCCceeeeeceEEEEEEEeceeecCcccc
Q 017792 161 AHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKGEETI 239 (366)
Q Consensus 161 ~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~ 239 (366)
. ....+....+.|...+++.+|+||+++|+++......-..|.. -..++..|++.||.++.|.|.+.+....+..
T Consensus 344 -~---r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~v~~l~R~~~y~~~~~~~ 419 (460)
T PRK07004 344 -N---RATEISEISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVYNPDSPDK 419 (460)
T ss_pred -c---HHHHHHHHHHHHHHHHHHhCCeEEEEeccChhhhccCCCCCChHHHhcchhhhhcCCEEEEeccccccCCCcCCC
Confidence 1 1223444444555555778999999999998765421223322 1445667999999999999987664433333
Q ss_pred ccEEEEEEEecCCCCCCCeeEEEEEeCCCCCchh
Q 017792 240 GSQIAVKIVKNKLAPPFKTAQFELEFGKGISRES 273 (366)
Q Consensus 240 g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~ 273 (366)
|. ..+.|.|||.+++ +.+.+.|.....++.
T Consensus 420 g~-~e~ivaKnR~G~~---G~v~l~f~~~~~~F~ 449 (460)
T PRK07004 420 GT-AEIIIGKQRNGPI---GPVRLTFLGQYTKFD 449 (460)
T ss_pred Cc-eEEEEEccCCCCC---ceEEEEEecCCCccc
Confidence 43 4789999999988 456666666555443
|
|
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.7e-20 Score=168.43 Aligned_cols=206 Identities=18% Similarity=0.241 Sum_probs=139.5
Q ss_pred HHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCHHH----HhhcccccC--------
Q 017792 45 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSL----AETIGVKTE-------- 111 (366)
Q Consensus 45 ~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~~~----~~~ig~~~~-------- 111 (366)
+||.+++ |+++|+++.|.|+||+|||+|+++++..+... +.+++|++.|+...... +...+++..
T Consensus 2 ~LD~~~~--Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 79 (242)
T cd00984 2 DLDNLTG--GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTGSLS 79 (242)
T ss_pred chhhhhc--CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhcCCCC
Confidence 5899886 99999999999999999999999999988877 88999999998765322 122333221
Q ss_pred -----------------ccee--cCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHH
Q 017792 112 -----------------NLLL--AQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ 172 (366)
Q Consensus 112 -----------------~~~~--~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~ 172 (366)
++.+ ....+++++...+..+....++++||||+++.+.... .. .+ ....+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~--~~--~~-----~~~~~~~ 150 (242)
T cd00984 80 DEDWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSK--KK--GN-----RQQEVAE 150 (242)
T ss_pred HHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCC--CC--CC-----HHHHHHH
Confidence 1111 1235778888888888777799999999999876321 10 11 1122333
Q ss_pred HHHHHHHHhhhcCcEEEEEecCCcccccccCCCCe-eeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecC
Q 017792 173 ALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPT-EVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNK 251 (366)
Q Consensus 173 ~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~-~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r 251 (366)
.++.|...++++|+++|+++|.++.........|. ....|+..+++.||.++.|.+........ .......+.+.|||
T Consensus 151 ~~~~L~~la~~~~~~ii~~~q~~r~~~~~~~~~~~~~~~~gS~~i~~~aD~vi~l~~~~~~~~~~-~~~~~~~l~v~KnR 229 (242)
T cd00984 151 ISRSLKLLAKELNVPVIALSQLSRGVESRADKRPMLSDLRESGSIEQDADVVMFLYRDEYYNKES-ESKGIAEIIVAKNR 229 (242)
T ss_pred HHHHHHHHHHHhCCeEEEecccChhhhccCCCCCCHHHHhhhcccccCCCEEEEEeccccccccc-CCCCceEEEEECCC
Confidence 44455555577899999999998753221112221 12345566899999999999875433211 12234589999999
Q ss_pred CCCCCCeeEEEEEe
Q 017792 252 LAPPFKTAQFELEF 265 (366)
Q Consensus 252 ~~~~~~~~~~~i~~ 265 (366)
+++. ....+.|
T Consensus 230 ~G~~---g~~~l~~ 240 (242)
T cd00984 230 NGPT---GTVELRF 240 (242)
T ss_pred CCCC---eeEEEEe
Confidence 9876 3444544
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >PRK08506 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-19 Score=179.01 Aligned_cols=224 Identities=21% Similarity=0.252 Sum_probs=152.6
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHH----Hhhccccc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSL----AETIGVKT 110 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~----~~~ig~~~ 110 (366)
...++|||++.||.+++ |+.+|+++.|.|+||+|||+|+++++..+...+..|+|++.|++..+.. +...++.+
T Consensus 171 ~~~Gi~TG~~~LD~~~~--G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~Rlla~~s~v~~ 248 (472)
T PRK08506 171 DIIGLDTGFVELNKMTK--GFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLRMLSAKTSIPL 248 (472)
T ss_pred CCCcccCChHHHHhhcC--CCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHHHHHHhcCCCH
Confidence 46789999999999875 9999999999999999999999999999887788999999998765322 11122221
Q ss_pred C-------------------------cceecC--CCCHHHHHHHHHHHHhc-CCceEEEEecccccCCCCccCCccchhh
Q 017792 111 E-------------------------NLLLAQ--PDCGEQALSLVDTLIRS-GSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 111 ~-------------------------~~~~~~--~~~~e~~l~~~~~~~~~-~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
+ ++++.. ..++.++...++.+... +.++++|||+++.+....... .
T Consensus 249 ~~i~~~~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~~----~-- 322 (472)
T PRK08506 249 QNLRTGDLDDDEWERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNFK----D-- 322 (472)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCCC----C--
Confidence 1 222322 34788888888877654 358999999998775211111 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-eccCCceeeeeceEEEEEEEeceeecCcc----
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKGEE---- 237 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~gG~~l~~~ad~~i~l~~~~~~~~~~~---- 237 (366)
+......+++.|+.|+ ++.+|+||+++|.++......-..|.. -..++.+|++.||.++.+.|...+...++
T Consensus 323 r~~ev~~isr~LK~lA---kel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R~~~y~~~~~~~~~ 399 (472)
T PRK08506 323 RHLQISEISRGLKLLA---RELDIPIIALSQLNRSLESRADKRPMLSDLRESGAIEQDADIILFVYRDDVYKEREEKEKE 399 (472)
T ss_pred HHHHHHHHHHHHHHHH---HHhCCcEEEEeecCcchhhccCCCCChHHhhcchhhhhcCCEEEEEecccccccccccccc
Confidence 1122233444555555 678999999999998764321223322 24556779999999999999865532110
Q ss_pred ----ccc-------------cEEEEEEEecCCCCCCCeeEEEEEeCCCCCch
Q 017792 238 ----TIG-------------SQIAVKIVKNKLAPPFKTAQFELEFGKGISRE 272 (366)
Q Consensus 238 ----~~g-------------~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~ 272 (366)
..| ....+.|.|||.+++ ..+.+.|.....++
T Consensus 400 ~~~~~~g~~~~~~~~~~~~~~~~eliiaKnR~G~~---G~v~l~f~~~~~~f 448 (472)
T PRK08506 400 KKAKKEGKEERRIHFQNKSIEEAEIIIGKNRNGPT---GTVKLRFQKEFTRF 448 (472)
T ss_pred cccccccccccccccccccccceEEEEecCCCCCC---ceEEEEEecCCccc
Confidence 012 125789999999887 45566665555444
|
|
| >PRK08840 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.8e-19 Score=175.87 Aligned_cols=223 Identities=17% Similarity=0.172 Sum_probs=152.1
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCCCCCCHHHHhh----cccc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHALDPSLAET----IGVK 109 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e~~~~~~~~~~----ig~~ 109 (366)
...++|||++.||.+++ |+.+|+++.|.|.||.|||+|++.++..+.. .+.+|+|++.|++..+...+- -++.
T Consensus 196 ~~~gi~TG~~~LD~~~~--G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~~Rlla~~s~v~ 273 (464)
T PRK08840 196 GVTGVDTGFTDLNKKTA--GLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMMRMLASLSRVD 273 (464)
T ss_pred CCCCcCCCcHHHHHhhc--CCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHhhCCCC
Confidence 46789999999999986 8999999999999999999999999998864 467899999998765321111 1111
Q ss_pred c------------------------C--cceec--CCCCHHHHHHHHHHHHhcC-CceEEEEecccccCCCCccCCccch
Q 017792 110 T------------------------E--NLLLA--QPDCGEQALSLVDTLIRSG-SVDVVVVDSVAALVPKGELDGEMGD 160 (366)
Q Consensus 110 ~------------------------~--~~~~~--~~~~~e~~l~~~~~~~~~~-~~~lvviDsl~~l~~~~~l~~~~g~ 160 (366)
. + ++++. ...++.++...+..+.... .+++||||+++.+.... .. ..
T Consensus 274 ~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~-~~---~~ 349 (464)
T PRK08840 274 QTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPA-LS---DN 349 (464)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCC-CC---Cc
Confidence 1 1 22332 2357788888887776553 58999999999875211 11 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeee-ccCCceeeeeceEEEEEEEeceeecCcccc
Q 017792 161 AHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEV-TCGGNALKFYASVRLNIKRIGLVKKGEETI 239 (366)
Q Consensus 161 ~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~-~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~ 239 (366)
....+....+.|...+++.+|+||+++|+++......-..|... ..++..|++-||.+++|.|...+....+..
T Consensus 350 -----r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~~~~~ 424 (464)
T PRK08840 350 -----RTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYNPDSPLK 424 (464)
T ss_pred -----hHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEEecccccCCCcCCC
Confidence 11223334444444446789999999999987654222234222 455677999999999999987654433333
Q ss_pred ccEEEEEEEecCCCCCCCeeEEEEEeCCCCCch
Q 017792 240 GSQIAVKIVKNKLAPPFKTAQFELEFGKGISRE 272 (366)
Q Consensus 240 g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~ 272 (366)
| ...+.|.|||.++.+ .+.+.|.....++
T Consensus 425 ~-~~elivaKnR~G~~G---~v~l~f~~~~~~f 453 (464)
T PRK08840 425 G-TAEIIIGKQRNGPIG---SVRLTFQGQYSRF 453 (464)
T ss_pred C-ceEEEEecccCCCCc---eEEEEEecCcccc
Confidence 4 347889999999874 4555655544433
|
|
| >PRK06904 replicative DNA helicase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.6e-19 Score=176.43 Aligned_cols=225 Identities=19% Similarity=0.232 Sum_probs=153.2
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCCCCCCHHHHhhc----cc
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHALDPSLAETI----GV 108 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e~~~~~~~~~~i----g~ 108 (366)
....++|||++.||.+++ |+.+|+++.|.|.||+|||+|++.++..+.. .+.+|+|++.|++..+...+-+ ++
T Consensus 199 ~~~~Gi~TG~~~LD~~t~--Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~~Rlla~~s~v 276 (472)
T PRK06904 199 NGVTGVTTGFTDLDKKTA--GLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRMLASLSRV 276 (472)
T ss_pred CCCCCccCChHHHHHHHh--ccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhhCCC
Confidence 356789999999999986 9999999999999999999999999988865 4778999999987653221111 11
Q ss_pred c---------------------------cCcceecC--CCCHHHHHHHHHHHHhc-CCceEEEEecccccCCCCccCCcc
Q 017792 109 K---------------------------TENLLLAQ--PDCGEQALSLVDTLIRS-GSVDVVVVDSVAALVPKGELDGEM 158 (366)
Q Consensus 109 ~---------------------------~~~~~~~~--~~~~e~~l~~~~~~~~~-~~~~lvviDsl~~l~~~~~l~~~~ 158 (366)
+ ..++++.. ..++.++...+..+... +.++++|||+++.+... ...+
T Consensus 277 ~~~~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~-~~~~-- 353 (472)
T PRK06904 277 DQTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAP-GFED-- 353 (472)
T ss_pred CHHHhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCC-CCCC--
Confidence 0 01133322 35778888877776654 36899999999877521 1111
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeee-ccCCceeeeeceEEEEEEEeceeecCcc
Q 017792 159 GDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEV-TCGGNALKFYASVRLNIKRIGLVKKGEE 237 (366)
Q Consensus 159 g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~-~~gG~~l~~~ad~~i~l~~~~~~~~~~~ 237 (366)
.+......+++.|+.|+ ++.+|+||+++|+++.+....-..|... ..++.+|++.||.+++|.|...+....+
T Consensus 354 ---~r~~ei~~isr~LK~lA---kel~ipVi~lsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~~~ 427 (472)
T PRK06904 354 ---NRTLEIAEISRSLKALA---KELKVPVVALSQLNRTLENRGDKRPVNSDLRESGSIEQDADLIMFIYRDEVYNETTE 427 (472)
T ss_pred ---cHHHHHHHHHHHHHHHH---HHhCCeEEEEEecCchhhccCCCCCchHHHhhcCccccCCcEEEEEeccccccCccc
Confidence 11122233444455554 6789999999999887654222234221 4556779999999999999876543322
Q ss_pred c-cccEEEEEEEecCCCCCCCeeEEEEEeCCCCCchh
Q 017792 238 T-IGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRES 273 (366)
Q Consensus 238 ~-~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~ 273 (366)
. .| ...+.|.|||.++. ..+.+.|.....++.
T Consensus 428 ~~~~-~~elivaKnR~G~~---G~v~l~f~~~~~~f~ 460 (472)
T PRK06904 428 DNKG-VAEIIIGKQRNGPI---GRVRLAFQGQYSRFD 460 (472)
T ss_pred cCCC-ceEEEEeccCCCCC---ceEEEEEccCCCCcc
Confidence 1 23 34789999999887 456666655554443
|
|
| >PRK06321 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-19 Score=177.50 Aligned_cols=226 Identities=16% Similarity=0.158 Sum_probs=155.2
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCCCCCCHHHHhhc----cc
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHALDPSLAETI----GV 108 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e~~~~~~~~~~i----g~ 108 (366)
....++|||++.||.+++ |+++|+++.|.|+||+|||+|+++++..+.. .+..|+|++.|++..+...+-+ ++
T Consensus 204 ~~~~Gi~tG~~~LD~~t~--Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rlla~~s~v 281 (472)
T PRK06321 204 PMISGIPTHFIDLDKMIN--GFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICSRSEV 281 (472)
T ss_pred CCCCccccCcHHHHHHhc--CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhhcCC
Confidence 346799999999999997 9999999999999999999999999988764 4778999999987653221111 12
Q ss_pred ccC-------------------------cceec--CCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchh
Q 017792 109 KTE-------------------------NLLLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDA 161 (366)
Q Consensus 109 ~~~-------------------------~~~~~--~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~ 161 (366)
+.. ++++. ...+++++...+..+....+++++|||+++.+........ .+
T Consensus 282 ~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~--~~- 358 (472)
T PRK06321 282 ESKKISVGDLSGRDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKESYDIQFLIIDYLQLLSGSGNLRN--SE- 358 (472)
T ss_pred CHHHhhcCCCCHHHHHHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHHcCCCCccCC--cc-
Confidence 111 11222 2347888888888887777899999999988752111111 11
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-eccCCceeeeeceEEEEEEEeceeecCccccc
Q 017792 162 HMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKGEETIG 240 (366)
Q Consensus 162 ~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g 240 (366)
.+...+....+.|...+++.+++||+++|.++..+...-..|.. -..++.+|++.||.+++|.|.+.+...+ ..|
T Consensus 359 ---~r~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLReSG~IEqdAD~v~~l~R~~~y~~~~-~~~ 434 (472)
T PRK06321 359 ---SRQTEISEISRMLKNLARELNIPILCLSQLSRKVEDRANHRPMMSDLRESGSIEQDSDLVMFLLRREYYDPND-KPG 434 (472)
T ss_pred ---hHHHHHHHHHHHHHHHHHHhCCcEEEEeecChhhhccCCCCCCHHHHhhcccccccCCEEEEEechhhcCCcC-CCC
Confidence 11223444444555555678999999999988765421122321 1455677999999999999876554322 223
Q ss_pred cEEEEEEEecCCCCCCCeeEEEEEeCCCCCch
Q 017792 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRE 272 (366)
Q Consensus 241 ~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~ 272 (366)
...+.|.|||.++.+ .+.+.|.....++
T Consensus 435 -~~elivaKnR~G~~G---~v~l~f~~~~~~f 462 (472)
T PRK06321 435 -TAELIVAKNRHGSIG---SVPLVFEKEFARF 462 (472)
T ss_pred -ceEEEEEecCCCCCc---eEEEEEecCCCcc
Confidence 357999999998874 5566665555444
|
|
| >PRK06749 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-18 Score=171.09 Aligned_cols=222 Identities=18% Similarity=0.161 Sum_probs=149.9
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhc----ccc
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETI----GVK 109 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~i----g~~ 109 (366)
....++|||++.||.+++ |+.+|+++.|.|.||.|||+|+++++..+...+..|+|++.|++..+...+-+ +++
T Consensus 164 ~~~~Gi~TG~~~LD~~t~--Gl~~G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~~ql~~R~ls~~~~i~ 241 (428)
T PRK06749 164 KEITGIETGYTSLNKMTC--GLQEGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSSKQLLKRMASCVGEVS 241 (428)
T ss_pred CCCCCccCCcHHHHHHhC--CCCCCcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHhccCCC
Confidence 346789999999999876 99999999999999999999999999999877778999999987653221111 111
Q ss_pred cC---------------------------cceec--CCCCHHHHHHHHHHHHhcCC--ceEEEEecccccCCCCccCCcc
Q 017792 110 TE---------------------------NLLLA--QPDCGEQALSLVDTLIRSGS--VDVVVVDSVAALVPKGELDGEM 158 (366)
Q Consensus 110 ~~---------------------------~~~~~--~~~~~e~~l~~~~~~~~~~~--~~lvviDsl~~l~~~~~l~~~~ 158 (366)
.. ++++. ...++.++...++.+.+... ..+||||+++.+.....- .
T Consensus 242 ~~~l~~~~~~l~~~e~~~~~~a~~~l~~~~i~i~d~~~~t~~~I~~~~r~~~~~~~~~~~lvvIDyLqli~~~~~~-~-- 318 (428)
T PRK06749 242 GGRLKNPKHRFAMEDWEKVSKAFAEIGELPLEIYDNAGVTVQDIWMQTRKLKRKHGDKKILIIVDYLQLITGDPKH-K-- 318 (428)
T ss_pred HHHHhcCcccCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeChhhcCCCCCC-C--
Confidence 10 11222 22467777777777765544 459999999877521110 0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-eccCCceeeeeceEEEEEEEeceeecCcc
Q 017792 159 GDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKGEE 237 (366)
Q Consensus 159 g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~gG~~l~~~ad~~i~l~~~~~~~~~~~ 237 (366)
+. ....+....+.|...+++.+|+||+++|+++......-..|.. -..++..+++.||.+++|.|...+....+
T Consensus 319 ~~-----r~~ei~~isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLR~SG~IEqdAD~vl~l~R~~~y~~~~~ 393 (428)
T PRK06749 319 GN-----RFQEISEISRKLKLLARELNVCVVALSQLSRSVESRQDKRPLLSDLRETGQIEQDADVIMLMYREDYYDKETM 393 (428)
T ss_pred CC-----HHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEEeeccccccccc
Confidence 11 1223334444444445678999999999998765421123321 13456679999999999999876643332
Q ss_pred ccccEEEEEEEecCCCCCCCeeEEEEEeCCCC
Q 017792 238 TIGSQIAVKIVKNKLAPPFKTAQFELEFGKGI 269 (366)
Q Consensus 238 ~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi 269 (366)
..+ ...+.|.|||.++++ .+.+.|....
T Consensus 394 ~~~-~~eliiaKnR~G~~G---~v~~~f~~~~ 421 (428)
T PRK06749 394 QKE-MTEIHVAKHRNGPVG---SFKLRFLKEF 421 (428)
T ss_pred CCC-ceEEEEecCCCCCCc---eEEEEEecCc
Confidence 223 347889999998874 5566554443
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.9e-19 Score=160.52 Aligned_cols=204 Identities=19% Similarity=0.267 Sum_probs=136.7
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCcc
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENL 113 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~~ 113 (366)
+..|.+++..||..++ ||+|+|++++|.|+||||||||+.+++....+.+.+++|++++++... ..++++|++.+..
T Consensus 3 ~~~~~~~~~~ld~~l~-ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~ 81 (230)
T PRK08533 3 LAKIELSRDELHKRLG-GGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKK 81 (230)
T ss_pred eEEEEEEEeeeehhhC-CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHH
Confidence 4578899999999999 999999999999999999999999998888778889999999887764 2345677765432
Q ss_pred ------eec---CCC-C---HHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHH
Q 017792 114 ------LLA---QPD-C---GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180 (366)
Q Consensus 114 ------~~~---~~~-~---~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~ 180 (366)
.+. +.. . .+..+..+.......+++++++|+++.... ... +. ...+.+.+.++.+
T Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~-~~~-----d~---~~~~~l~~~l~~l--- 149 (230)
T PRK08533 82 LISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLIS-NDA-----SE---VAVNDLMAFFKRI--- 149 (230)
T ss_pred hhcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhc-CCc-----ch---HHHHHHHHHHHHH---
Confidence 111 111 1 133333333344445789999999998752 111 11 1123333334333
Q ss_pred hhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCC--Ce
Q 017792 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPF--KT 258 (366)
Q Consensus 181 l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~--~~ 258 (366)
++.|+++++++|.... .. .. . ..++|+||.+|.|+... .+. ..++.+.|+|.|..++. ..
T Consensus 150 -~~~g~tvi~t~~~~~~-~~-------~~-~--~~~~~~~DgvI~L~~~~---~~~---~~~R~i~V~KmR~~~~~~~~~ 211 (230)
T PRK08533 150 -SSLNKVIILTANPKEL-DE-------SV-L--TILRTAATMLIRLEVKV---FGG---DLKNSAKIVKYNMAKGSFQKS 211 (230)
T ss_pred -HhCCCEEEEEeccccc-cc-------cc-c--eeEEEeeeEEEEEEEee---cCC---EEEEEEEEEEecCCccccCCE
Confidence 4558888777664421 10 01 1 13899999999998653 111 13447999999986553 47
Q ss_pred eEEEEEeCCCCC
Q 017792 259 AQFELEFGKGIS 270 (366)
Q Consensus 259 ~~~~i~~~~Gi~ 270 (366)
.+|++..+.|+.
T Consensus 212 ~~f~i~~~~g~~ 223 (230)
T PRK08533 212 IPFRVEPKIGLA 223 (230)
T ss_pred EEEEEcCCccEE
Confidence 889998777875
|
|
| >COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.6e-18 Score=163.87 Aligned_cols=241 Identities=18% Similarity=0.196 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 5 DLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
.+++..++++|++.|.++ . +.++|||++.||.+++ |+.+|+++.+.|.||.|||+||+.++.+++.
T Consensus 157 ~~~l~~~~~~i~~~~~~~-----------~-~~Gi~tgf~~LD~~t~--G~~~~dLii~AaRP~mGKTafalnia~n~a~ 222 (435)
T COG0305 157 GDLLKETMDEIEARFENG-----------G-LIGVPTGFTDLDEITS--GFRPGDLIIVAARPGMGKTALALNIALNAAA 222 (435)
T ss_pred HHHHHHHHHHHHHHhccC-----------C-CcccccCchhhHHHhc--CCccCCEEEEccCCCCChHHHHHHHHHHHHH
Confidence 467889999999988753 2 7899999999999998 7999999999999999999999999999886
Q ss_pred c-CCeEEEEeCCCCCCHHHHhhc----ccccC-------------------------cceec--CCCCHHHHHHHHHHHH
Q 017792 85 Q-GGYCVFIDAEHALDPSLAETI----GVKTE-------------------------NLLLA--QPDCGEQALSLVDTLI 132 (366)
Q Consensus 85 ~-gg~vl~id~e~~~~~~~~~~i----g~~~~-------------------------~~~~~--~~~~~e~~l~~~~~~~ 132 (366)
. ...|.+++.|++.++...+-+ +++.. .+++. +..+..++...++++.
T Consensus 223 ~~~~~v~iFSLEM~~eql~~R~Ls~~s~v~~~kirtg~l~~~d~~~l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk 302 (435)
T COG0305 223 DGRKPVAIFSLEMSEEQLVMRLLSSESGIESSKLRTGRLSDDEWERLIKAASELSEAPIFIDDTPGLTITEIRSKARRLK 302 (435)
T ss_pred hcCCCeEEEEccCCHHHHHHHhhccccccchhccccccccHHHHHHHHHHHHHHhhCCeeecCCCcCCHHHHHHHHHHHH
Confidence 5 556899999987664322222 11111 11121 2347788888888888
Q ss_pred hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-ecc
Q 017792 133 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTC 211 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~ 211 (366)
+...+.++++|+++.+.... .. . .+...++..-+.|...+++.+++||..+|.++.++...-..|.. -..
T Consensus 303 ~~~~l~~i~iDYLqLm~~~~-~~-----~---~r~qevs~iSr~LK~lAkEl~vpvialSQLsR~~E~R~dkrP~lSDLR 373 (435)
T COG0305 303 LKHNLGLIVIDYLQLMTGGK-KS-----E---NRKQEVSEISRSLKGLAKELGVPVIALSQLNRSVEQRTDKRPMLSDLR 373 (435)
T ss_pred HhcCccEEEEEEEEeecccc-cc-----h---hHHHHHHHHHHHHHHHHHhcCCcEEehhhhcccchhccccCCccccCc
Confidence 88889999999999887311 11 1 22334444445555555778999999999999887642222321 133
Q ss_pred CCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCCCCch
Q 017792 212 GGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRE 272 (366)
Q Consensus 212 gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~ 272 (366)
...++++-||.++++.+.+.+....+..|. ..+.|.|||.+|. ..+.+.|.....++
T Consensus 374 ESGsIEQDAD~VmflyRde~y~~~~~~~g~-aeiIi~K~RnGp~---GtV~l~f~~~~~~F 430 (435)
T COG0305 374 ESGALEQDADIVIFLHRDEAYLKDTPDRGE-AEVIVAKNRNGPT---GTVKLAFDPQFTKF 430 (435)
T ss_pred cCCchhhhCCEEEEEechhhccCCCCCCce-EEEEEEeccCCCC---ceEEEEEecccccc
Confidence 455799999999999999877766555454 4788999999887 45557776665544
|
|
| >COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8e-18 Score=156.51 Aligned_cols=208 Identities=26% Similarity=0.389 Sum_probs=146.5
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCcc
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENL 113 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~~ 113 (366)
++++|||++.||.+|+ ||+|+|++++|+|+||||||+|+.|++......|.+|+|++.++.... ..+.++|++++..
T Consensus 2 ~~~~~TGI~glD~~l~-GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~ 80 (260)
T COG0467 2 MERIPTGIPGLDEILG-GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVY 80 (260)
T ss_pred CccccCCCcchHHHhc-CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHH
Confidence 5689999999999999 999999999999999999999999999999999999999999987764 3455678776421
Q ss_pred e------e--------------c-CCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHH
Q 017792 114 L------L--------------A-QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ 172 (366)
Q Consensus 114 ~------~--------------~-~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~ 172 (366)
. + . .+...+.+...+...+.......+|+||+..+.- .+.. . ...| .
T Consensus 81 ~~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~--~~~~----~---~~~r---~ 148 (260)
T COG0467 81 IEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITELTL--YLND----P---ALVR---R 148 (260)
T ss_pred hhcCCEEEEEccccccccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCchHhh--hcCc----h---HHHH---H
Confidence 1 1 0 1234556677777777777789999999996541 1111 0 1223 3
Q ss_pred HHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCC
Q 017792 173 ALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKL 252 (366)
Q Consensus 173 ~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~ 252 (366)
.+..+...+++.++|.+++++....... .. ....+.+|.+|.|+.... .+ ...+..+.+.|.|.
T Consensus 149 ~~~~l~~~~~~~~~t~~~~~~~~~~~~~-------~~----~~~~~~vdgvI~l~~~~~--~~---~~~r~~~~i~k~r~ 212 (260)
T COG0467 149 ILLLLKRFLKKLGVTSLLTTEAPVEERG-------ES----GVEEYIVDGVIRLDLKEI--EG---GGDRRYLRILKMRG 212 (260)
T ss_pred HHHHHHHHHHhCCCEEEEEecccccCCC-------cc----ceEEEEEEEEEEEeeecc--cC---ceEEEEEEEEeccc
Confidence 4555555556778999999886432110 00 225669999999986431 11 12232788999997
Q ss_pred CCC-CCeeEEEEEeCCCCCch
Q 017792 253 APP-FKTAQFELEFGKGISRE 272 (366)
Q Consensus 253 ~~~-~~~~~~~i~~~~Gi~~~ 272 (366)
.++ .....|.|.-+.|+...
T Consensus 213 ~~~~~~~~~~~i~~g~gi~i~ 233 (260)
T COG0467 213 TPHSLKVIPFEITDGEGIVVY 233 (260)
T ss_pred cccCCceeceEEecCCcEEEe
Confidence 554 36778888844676543
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.7e-18 Score=148.39 Aligned_cols=160 Identities=20% Similarity=0.264 Sum_probs=117.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+.+|+++.|+||+|||||||++++.++-.+++|. ++++++.... ..+++++|+++|++.+++..|+-+++.....
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~-I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGS-ITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCce-EEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 6799999999999999999999998888888886 8888865533 3567889999999999999888776544322
Q ss_pred HHhcC-----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHH
Q 017792 131 LIRSG-----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSH 179 (366)
Q Consensus 131 ~~~~~-----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~ 179 (366)
.+... -...+-+-.-...+| ..++| |++|+..+||+++.. +..+.+
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-~qLSG--GQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~ 180 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYP-AQLSG--GQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMK 180 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-cccCc--HHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHH
Confidence 11110 011222233334443 66777 999999999998654 556666
Q ss_pred HhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 180 SLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 180 ~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
.|.+.|.|+|++||.+.- ....||++++|+++.++.+++
T Consensus 181 ~LA~eGmTMivVTHEM~F------------------Ar~VadrviFmd~G~iie~g~ 219 (240)
T COG1126 181 DLAEEGMTMIIVTHEMGF------------------AREVADRVIFMDQGKIIEEGP 219 (240)
T ss_pred HHHHcCCeEEEEechhHH------------------HHHhhheEEEeeCCEEEEecC
Confidence 677889999999996642 345789999999987666653
|
|
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-17 Score=148.14 Aligned_cols=167 Identities=22% Similarity=0.291 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 017792 7 ALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG 86 (366)
Q Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g 86 (366)
-|+.|+|+|....|-.+|-.+.... ... |. +|.+. ||+++|+++.|.|+||+|||+|+++++......|
T Consensus 24 ~~~~~~~~~a~~~g~~~w~~~~~~~----~~~--~p---~~~l~--GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~G 92 (237)
T PRK05973 24 PLHEALDRIAAEEGFSSWSLLAAKA----AAT--TP---AEELF--SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSG 92 (237)
T ss_pred cHHHHHHHHHHHhccchHHHHHHhc----cCC--CC---HHHhc--CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 3889999999999998887765421 111 22 56644 6999999999999999999999999999888888
Q ss_pred CeEEEEeCCCCCCH--HHHhhcccccCcc----ee--cCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCcc
Q 017792 87 GYCVFIDAEHALDP--SLAETIGVKTENL----LL--AQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEM 158 (366)
Q Consensus 87 g~vl~id~e~~~~~--~~~~~ig~~~~~~----~~--~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~ 158 (366)
.+|+|++.|++.+. .++..+|++.++. .+ ..+.+.++++ ..+....+.++|||||++.+.. ....
T Consensus 93 e~vlyfSlEes~~~i~~R~~s~g~d~~~~~~~~~~d~~d~~~~~~ii---~~l~~~~~~~lVVIDsLq~l~~--~~~~-- 165 (237)
T PRK05973 93 RTGVFFTLEYTEQDVRDRLRALGADRAQFADLFEFDTSDAICADYII---ARLASAPRGTLVVIDYLQLLDQ--RREK-- 165 (237)
T ss_pred CeEEEEEEeCCHHHHHHHHHHcCCChHHhccceEeecCCCCCHHHHH---HHHHHhhCCCEEEEEcHHHHhh--cccc--
Confidence 89999999998764 4456678776543 11 1223444433 3344445679999999998752 1110
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccc
Q 017792 159 GDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLST 200 (366)
Q Consensus 159 g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~ 200 (366)
. .+...++.|...+++.|+|||+++|..+..+.
T Consensus 166 --~-------el~~~~~~Lk~~Ak~~gitvIl~sQl~r~~e~ 198 (237)
T PRK05973 166 --P-------DLSVQVRALKSFARERGLIIVFISQIDRSFDP 198 (237)
T ss_pred --h-------hHHHHHHHHHHHHHhCCCeEEEEecCcccccc
Confidence 0 12234556666778899999999999887554
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-17 Score=147.09 Aligned_cols=153 Identities=21% Similarity=0.240 Sum_probs=108.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-----HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-----PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-----~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
|++|+++.|.||+|||||||+..+.+...+.+|. +++++.+.. + ..+.+.+|+++|+..+.+..|+.|++..
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~-v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~l 106 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE-VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVEL 106 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCce-EEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHh
Confidence 7899999999999999999988777777776665 566654322 1 2457789999999999999999998875
Q ss_pred HHHHHhcCC----------ceEEEEecccc-cCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 128 VDTLIRSGS----------VDVVVVDSVAA-LVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 128 ~~~~~~~~~----------~~lvviDsl~~-l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
-..+..... ...+-+..... -. ..+++| |++|+...||+++.. +..
T Consensus 107 pl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~-p~eLSG--GqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ 183 (226)
T COG1136 107 PLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKK-PSELSG--GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLE 183 (226)
T ss_pred HHHHcCCChhHHHHHHHHHHHhcCChhhhccCC-chhcCH--HHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHH
Confidence 221111000 11111221112 22 356777 999999999998764 444
Q ss_pred HHHHh-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEec
Q 017792 177 LSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 230 (366)
Q Consensus 177 L~~~l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~ 230 (366)
+...+ ++.|+|||++||... ++.+||++|.++.+.
T Consensus 184 ll~~~~~~~g~tii~VTHd~~-------------------lA~~~dr~i~l~dG~ 219 (226)
T COG1136 184 LLRELNKERGKTIIMVTHDPE-------------------LAKYADRVIELKDGK 219 (226)
T ss_pred HHHHHHHhcCCEEEEEcCCHH-------------------HHHhCCEEEEEeCCe
Confidence 44444 567999999999653 667899999998765
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-17 Score=147.51 Aligned_cols=161 Identities=21% Similarity=0.232 Sum_probs=121.4
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
-|+.|++++++||+||||||+++++..++.+..|. ++++++...+ ..+++++||+.|.+-+++..|+.+++..+..
T Consensus 23 ~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~-I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~ 101 (309)
T COG1125 23 TIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGE-ILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPK 101 (309)
T ss_pred EecCCeEEEEECCCCCcHHHHHHHHhcccCCCCce-EEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhh
Confidence 37899999999999999999999999999998887 7888887655 4788999999999999999999999887765
Q ss_pred HHhcC----------CceEEEEec--ccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 131 LIRSG----------SVDVVVVDS--VAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 131 ~~~~~----------~~~lvviDs--l~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
+..-. -..++-+|. ...-+ ..+++| |++|+...+|+++.. |....
T Consensus 102 L~~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-P~eLSG--GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~ 178 (309)
T COG1125 102 LLGWDKERIKKRADELLDLVGLDPSEYADRY-PHELSG--GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEI 178 (309)
T ss_pred hcCCCHHHHHHHHHHHHHHhCCCHHHHhhcC-chhcCc--chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHH
Confidence 43211 123333443 23333 266777 999999999998764 33322
Q ss_pred HHh-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 179 HSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 179 ~~l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
..+ ++.+.||||++|..++ .-.++|++..|+.++++.-+.
T Consensus 179 ~~lq~~l~kTivfVTHDidE------------------A~kLadri~vm~~G~i~Q~~~ 219 (309)
T COG1125 179 KELQKELGKTIVFVTHDIDE------------------ALKLADRIAVMDAGEIVQYDT 219 (309)
T ss_pred HHHHHHhCCEEEEEecCHHH------------------HHhhhceEEEecCCeEEEeCC
Confidence 222 4579999999998876 445788888888877655443
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-17 Score=150.04 Aligned_cols=162 Identities=20% Similarity=0.279 Sum_probs=113.1
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
-+++|++++|.||||||||||++.+++.+.+..|. +++++....+ +.+++.++|.+|......+.++.+++..-+.
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~-V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~ 102 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGE-VLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRY 102 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCE-EEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCC
Confidence 37899999999999999999999999999988886 7888876544 5789999999998755544454444332111
Q ss_pred H----Hh-cCC---------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 131 L----IR-SGS---------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 131 ~----~~-~~~---------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
- .. ... ...+-+..+..- +-.+++| |++|+...||++++. +..
T Consensus 103 p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-~~~~LSG--GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ 179 (258)
T COG1120 103 PHLGLFGRPSKEDEEIVEEALELLGLEHLADR-PVDELSG--GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLE 179 (258)
T ss_pred cccccccCCCHhHHHHHHHHHHHhCcHHHhcC-cccccCh--hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHH
Confidence 0 00 000 001111122211 1356666 899999999998886 444
Q ss_pred HHHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCcc
Q 017792 177 LSHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEE 237 (366)
Q Consensus 177 L~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~ 237 (366)
+.+.+. +.|.|||++.|...- ...|||.++.|++++++..|.+
T Consensus 180 ll~~l~~~~~~tvv~vlHDlN~------------------A~ryad~~i~lk~G~i~a~G~p 223 (258)
T COG1120 180 LLRDLNREKGLTVVMVLHDLNL------------------AARYADHLILLKDGKIVAQGTP 223 (258)
T ss_pred HHHHHHHhcCCEEEEEecCHHH------------------HHHhCCEEEEEECCeEEeecCc
Confidence 444444 679999999996643 5668999999999988888764
|
|
| >COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.9e-16 Score=135.39 Aligned_cols=201 Identities=23% Similarity=0.330 Sum_probs=142.9
Q ss_pred cccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCcce-
Q 017792 38 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENLL- 114 (366)
Q Consensus 38 ~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~~~- 114 (366)
.+++|.++||+-|| ||+|-|+++.|-|++|+|||-|+.+++..+...+.++.|+++|.+... ...+.++++..+.+
T Consensus 9 ii~~gndelDkrLG-GGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l 87 (235)
T COG2874 9 IIKSGNDELDKRLG-GGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLL 87 (235)
T ss_pred hccCCcHHHHhhcc-CCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHh
Confidence 58999999999999 999999999999999999999999999999999999999999987654 23455666554322
Q ss_pred -----ecC---------CCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHH
Q 017792 115 -----LAQ---------PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180 (366)
Q Consensus 115 -----~~~---------~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~ 180 (366)
+++ +.....+++.+....+..+.++++|||++...... +. ..+..+...+++|.
T Consensus 88 ~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-------~~---~~vl~fm~~~r~l~-- 155 (235)
T COG2874 88 SGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-------SE---DAVLNFMTFLRKLS-- 155 (235)
T ss_pred cceeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-------cH---HHHHHHHHHHHHHH--
Confidence 221 22345677777777777789999999999887322 11 12333444455554
Q ss_pred hhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCC--CCe
Q 017792 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP--FKT 258 (366)
Q Consensus 181 l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~--~~~ 258 (366)
..|.+||++-|...- .. .+. ..+...||..+.|+..++ |.+ .+..+.++|-|.++- ++.
T Consensus 156 --d~gKvIilTvhp~~l------~e--~~~---~rirs~~d~~l~L~~~~~---Gg~---~~~~~~i~K~~ga~~s~~~~ 216 (235)
T COG2874 156 --DLGKVIILTVHPSAL------DE--DVL---TRIRSACDVYLRLRLEEL---GGD---LIKVLEIVKYRGARKSFQNI 216 (235)
T ss_pred --hCCCEEEEEeChhhc------CH--HHH---HHHHHhhheeEEEEhhhh---CCe---eeEEEEEeeecCchhhcCCc
Confidence 579999999996542 11 111 126778999999886431 211 233688899887643 346
Q ss_pred eEEEEEeCCCCC
Q 017792 259 AQFELEFGKGIS 270 (366)
Q Consensus 259 ~~~~i~~~~Gi~ 270 (366)
..|++..+.|+.
T Consensus 217 I~F~V~P~~Glk 228 (235)
T COG2874 217 ISFRVEPGFGLK 228 (235)
T ss_pred eeEEecCCCceE
Confidence 788887766764
|
|
| >KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-17 Score=154.59 Aligned_cols=220 Identities=30% Similarity=0.458 Sum_probs=152.4
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH----HHHhhccccc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP----SLAETIGVKT 110 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~----~~~~~ig~~~ 110 (366)
....++||+.+||.+|+ ||++.|.+++|+||||+|||.||..++....--++.++|+|.+..+.. ..+.+.+...
T Consensus 89 ~~~~l~Tg~~~lD~lL~-gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~~gge~~~l~IDs~s~~~~~~~~~ia~~~~~~~ 167 (326)
T KOG1433|consen 89 ELGFLSTGSKALDKLLG-GGIETGSLTELVGPPGSGKTQLCHTLAVTCGGGEGKVLYIDTESTFRLERLTEIAGRSGLRG 167 (326)
T ss_pred cceeeccchhhhhHhhc-cCcccCceeEEecCCCccHHHHHHHHHHhccCCcceEEEEecchhcccchhhhhhhhhhhhh
Confidence 45689999999999999 999999999999999999999998777766333568999999985442 3344444332
Q ss_pred C----cceecCCCCHHHHHHH---HHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhh
Q 017792 111 E----NLLLAQPDCGEQALSL---VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183 (366)
Q Consensus 111 ~----~~~~~~~~~~e~~l~~---~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~ 183 (366)
. ++.+......++.+.. +..........++++||..+.. +..+.+ .++. ....+.++..++.+.+...+
T Consensus 168 ~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~l~~vds~ta~~-~~~~~g-~~~~--~a~~~~~~~~~~~l~~la~~ 243 (326)
T KOG1433|consen 168 RDTLSNLMLARAYNLDHQLQLIQEAEIMINQSRVKLLIVDSATALY-RTTFKG-RGEL--SARQMLLAKFLRSLKKLADE 243 (326)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccceeEEEeccccccc-cccccc-ccch--HHHHHHHHHHHHHHHHHHHh
Confidence 2 2222222223322222 2223344567899999999988 556655 2222 12334456667777766678
Q ss_pred cCcEEEEEecCCccccccc-CCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEE
Q 017792 184 SQTILIFINQVRAKLSTFG-FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFE 262 (366)
Q Consensus 184 ~~~tVI~i~h~~~~~~~~~-~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~ 262 (366)
.+..||++||+...++... |+.....+.+|++|+|...+|+.+.+++ |-++..++.++++.|++ ...|.
T Consensus 244 ~g~~vvitn~v~~~~d~~~~f~~~~~~~~~~~~~~H~~~tr~~~~~~~---------g~~~~~k~~~s~~l~e~-~~~~~ 313 (326)
T KOG1433|consen 244 FGVAVVITNQVTAQVDGAIMFGSDPKKPIGGNIWAHAVTTRLGLRKGK---------GERRICKIADSPCLPEA-EAVFA 313 (326)
T ss_pred cCceEEEecccccccccccccCcccccccccchHHHHHHHHHHHHhcc---------ccchhhhhhcCCCCCcc-hhHHH
Confidence 9999999999999988754 6655578999999999999998877632 22335777888876653 45666
Q ss_pred EEeCCCCC
Q 017792 263 LEFGKGIS 270 (366)
Q Consensus 263 i~~~~Gi~ 270 (366)
|. ..|+.
T Consensus 314 i~-~~g~~ 320 (326)
T KOG1433|consen 314 IT-EDGIS 320 (326)
T ss_pred HH-hhhhh
Confidence 66 55654
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-16 Score=152.53 Aligned_cols=161 Identities=18% Similarity=0.254 Sum_probs=121.8
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
-|++|+++.|.|||||||||+++.+++..++.+|. ++++++...+ +...+.+|+++|+..+++..|+.+++.+-.++.
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~-I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~ 105 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGE-ILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR 105 (352)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc
Confidence 48899999999999999999999999999999886 7888887665 567789999999999999999999976643311
Q ss_pred hc-----------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH---------------------HHHHHHH
Q 017792 133 RS-----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA---------------------LRKLSHS 180 (366)
Q Consensus 133 ~~-----------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------------L~~L~~~ 180 (366)
.. ....++-++....-. ..++++ |++|+...||+++.. -..+...
T Consensus 106 ~~~~~~~i~~rv~e~L~lV~L~~~~~R~-p~qLSG--GQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~l 182 (352)
T COG3842 106 KKLKKAEIKARVEEALELVGLEGFADRK-PHQLSG--GQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKEL 182 (352)
T ss_pred CCCCHHHHHHHHHHHHHHcCchhhhhhC-hhhhCh--HHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHH
Confidence 10 113445555555555 366776 999999999998754 2233444
Q ss_pred hhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 181 l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
.++.|+|.|++||.-++ .-..+|++..|+++.+...++
T Consensus 183 q~~~giT~i~VTHDqeE------------------Al~msDrI~Vm~~G~I~Q~gt 220 (352)
T COG3842 183 QRELGITFVYVTHDQEE------------------ALAMSDRIAVMNDGRIEQVGT 220 (352)
T ss_pred HHhcCCeEEEEECCHHH------------------HhhhccceEEccCCceeecCC
Confidence 45679999999997765 334678888888887665554
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-16 Score=146.35 Aligned_cols=170 Identities=22% Similarity=0.261 Sum_probs=121.5
Q ss_pred ChHHHHHh-hCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcce
Q 017792 42 GSFALDIA-LGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLL 114 (366)
Q Consensus 42 G~~~LD~~-L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~ 114 (366)
....||.+ |. |++|++++|+|.+|+|||||++++..+-.|..|. +++++.+... ...++++|+.+|++.
T Consensus 18 ~~~al~~vsL~---I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~-v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 18 TVTALDDVSLE---IPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGS-VFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred ceeeeccceEE---EcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCce-EEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 34556644 44 8999999999999999999999887777777786 6777765433 256788999999999
Q ss_pred ecCCCCHHHHHHHHHHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-----------
Q 017792 115 LAQPDCGEQALSLVDTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA----------- 173 (366)
Q Consensus 115 ~~~~~~~e~~l~~~~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------- 173 (366)
+....|+.+++.+-..+.... -..++-+..-..-+| .++++ |++|+..+||+++..
T Consensus 94 LLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-~qLSG--GQKQRVaIARALa~~P~iLL~DEaTS 170 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-AQLSG--GQKQRVAIARALANNPKILLCDEATS 170 (339)
T ss_pred ccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-hhcCc--chhhHHHHHHHHhcCCCEEEecCccc
Confidence 998888887765532221100 022333333333443 56776 999999999998764
Q ss_pred ----------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 ----------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 ----------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
|.-|...-++.|.||++|||.++. +..+||++..|.+++++.+|.
T Consensus 171 ALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V------------------vk~ic~rVavm~~G~lvE~G~ 225 (339)
T COG1135 171 ALDPETTQSILELLKDINRELGLTIVLITHEMEV------------------VKRICDRVAVLDQGRLVEEGT 225 (339)
T ss_pred cCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH------------------HHHHhhhheEeeCCEEEEecc
Confidence 444444446789999999997765 666788888888888777653
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-16 Score=136.06 Aligned_cols=160 Identities=17% Similarity=0.182 Sum_probs=116.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+..|++++|.|+||+||||+++.++..+.|..|. +++++-+... ....+++|+.+...-++...|+++++.++..+.
T Consensus 25 ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~-v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~ 103 (245)
T COG4555 25 AEEGEITGLLGENGAGKTTLLRMIATLLIPDSGK-VTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN 103 (245)
T ss_pred eccceEEEEEcCCCCCchhHHHHHHHhccCCCce-EEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh
Confidence 6789999999999999999999999999998885 7888766543 356888999998888888899998877655432
Q ss_pred hcCCc----------eEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 133 RSGSV----------DVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 133 ~~~~~----------~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
.-.+. +.+-+++...-. -.+++. |.+|+...||++.+. ++.+...++
T Consensus 104 ~l~~~~~kari~~l~k~l~l~~~~~rR-v~~~S~--G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k 180 (245)
T COG4555 104 GLSRKEIKARIAELSKRLQLLEYLDRR-VGEFST--GMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK 180 (245)
T ss_pred hhhhhHHHHHHHHHHHHhChHHHHHHH-Hhhhch--hhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh
Confidence 11110 000011111100 123333 667777777776653 777778888
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
..|.+|||++|.+.+ ++.+||++|.+++++++.++.
T Consensus 181 ~egr~viFSSH~m~E------------------vealCDrvivlh~Gevv~~gs 216 (245)
T COG4555 181 NEGRAVIFSSHIMQE------------------VEALCDRVIVLHKGEVVLEGS 216 (245)
T ss_pred cCCcEEEEecccHHH------------------HHHhhheEEEEecCcEEEcCC
Confidence 889999999999887 667899999999998887764
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-16 Score=149.53 Aligned_cols=162 Identities=14% Similarity=0.182 Sum_probs=118.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
-+++|++++|.||||||||||++.+++.+.+.+|. +.++++.... ....+++||.+|++.+++..|+.+++.++..+
T Consensus 27 ~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~-i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l 105 (293)
T COG1131 27 EVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGE-ILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARL 105 (293)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceE-EEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHH
Confidence 57899999999999999999999999999998887 5566654443 46778899999999999999999999988776
Q ss_pred HhcCC-ceEEEEecccccCC--------CCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 132 IRSGS-VDVVVVDSVAALVP--------KGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 132 ~~~~~-~~lvviDsl~~l~~--------~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
..... ...-.++.+...+. -..+++ |++|+...|.+++.. ++.+.+.++
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~--G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~ 183 (293)
T COG1131 106 YGLSKEEAEERIEELLELFGLEDKANKKVRTLSG--GMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELA 183 (293)
T ss_pred hCCChhHHHHHHHHHHHHcCCchhhCcchhhcCH--HHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHH
Confidence 43221 00001122211111 122333 666666666666543 677777777
Q ss_pred hcC-cEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 183 LSQ-TILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 183 ~~~-~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.+ +||++++|..++ ++.+||+++.|+++.++..+.
T Consensus 184 ~~g~~tvlissH~l~e------------------~~~~~d~v~il~~G~~~~~g~ 220 (293)
T COG1131 184 KEGGVTILLSTHILEE------------------AEELCDRVIILNDGKIIAEGT 220 (293)
T ss_pred hCCCcEEEEeCCcHHH------------------HHHhCCEEEEEeCCEEEEeCC
Confidence 766 899999998876 666799999999998888763
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-16 Score=143.35 Aligned_cols=154 Identities=18% Similarity=0.254 Sum_probs=107.5
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCccee--cCCCCHHHHHHHHHH-
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLL--AQPDCGEQALSLVDT- 130 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~--~~~~~~e~~l~~~~~- 130 (366)
-+++|+++.|+||||+|||||++.+++.+.+..|. +++.+.......-..++||+||+..+ .-|.++.+++..-..
T Consensus 26 ~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~-i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~ 104 (254)
T COG1121 26 SVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE-IKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYG 104 (254)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcce-EEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcc
Confidence 47899999999999999999999999999998887 45555443333224689999997643 356788887654210
Q ss_pred ---HHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 131 ---LIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 131 ---~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
+++.. ....+-+-.+..- +-.+++| |++|+..+||++++. +..|
T Consensus 105 ~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-~i~~LSG--GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~l 181 (254)
T COG1121 105 KKGWFRRLNKKDKEKVDEALERVGMEDLRDR-QIGELSG--GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDL 181 (254)
T ss_pred cccccccccHHHHHHHHHHHHHcCchhhhCC-cccccCc--HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHH
Confidence 00000 0001111111111 1355666 899999999998775 8888
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
.+.+++.|+||++++|.... +..++|.++.|.+.
T Consensus 182 L~~l~~eg~tIl~vtHDL~~------------------v~~~~D~vi~Ln~~ 215 (254)
T COG1121 182 LKELRQEGKTVLMVTHDLGL------------------VMAYFDRVICLNRH 215 (254)
T ss_pred HHHHHHCCCEEEEEeCCcHH------------------hHhhCCEEEEEcCe
Confidence 88888889999999997754 66788999999864
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.5e-16 Score=137.97 Aligned_cols=160 Identities=21% Similarity=0.281 Sum_probs=119.5
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
-+++|++++|.||+|||||||++.+.+++.+..|. +++++++... ..+.+++|+.+|.-.++...++.+++.+
T Consensus 30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~Ge-I~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVaf 108 (263)
T COG1127 30 DVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGE-ILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF 108 (263)
T ss_pred eecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCe-EEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhe
Confidence 38899999999999999999999999999999887 6777776533 2457789999998888888888776544
Q ss_pred ------------HHHHHhcCCceEEEEecc-cccCCCCccCCccchhhHHHHHHHHHHH--------------------H
Q 017792 128 ------------VDTLIRSGSVDVVVVDSV-AALVPKGELDGEMGDAHMAMQARLMSQA--------------------L 174 (366)
Q Consensus 128 ------------~~~~~~~~~~~lvviDsl-~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L 174 (366)
++.++ ..+..+|-+... ..++| .+++| |.+.+...||+++-. +
T Consensus 109 plre~~~lp~~~i~~lv-~~KL~~VGL~~~~~~~~P-sELSG--GM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~ 184 (263)
T COG1127 109 PLREHTKLPESLIRELV-LMKLELVGLRGAAADLYP-SELSG--GMRKRVALARAIALDPELLFLDEPTSGLDPISAGVI 184 (263)
T ss_pred ehHhhccCCHHHHHHHH-HHHHHhcCCChhhhhhCc-hhhcc--hHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHH
Confidence 11111 112344444544 55664 77877 778888888887653 5
Q ss_pred HHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 175 RKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 175 ~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
-.|++.+++ .+.|++++||.... +..+||+++.+.+++++..|+
T Consensus 185 ~~LI~~L~~~lg~T~i~VTHDl~s------------------~~~i~Drv~~L~~gkv~~~Gt 229 (263)
T COG1127 185 DELIRELNDALGLTVIMVTHDLDS------------------LLTIADRVAVLADGKVIAEGT 229 (263)
T ss_pred HHHHHHHHHhhCCEEEEEECChHH------------------HHhhhceEEEEeCCEEEEeCC
Confidence 556655554 59999999997765 556789999999988887765
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.1e-16 Score=144.01 Aligned_cols=160 Identities=16% Similarity=0.251 Sum_probs=121.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
|+.|++++|.||||||||||++.|+++..+..|. ++++++-.++ ....+++|+++|+..+++..|+.+++.+-..
T Consensus 25 i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~-I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~ 103 (345)
T COG1118 25 IKSGELVALLGPSGAGKSTLLRIIAGLETPDAGR-IRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLK 103 (345)
T ss_pred ecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCce-EEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhccc
Confidence 7899999999999999999999999999998887 6677773333 4567889999999999999999998776432
Q ss_pred HHh------------cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 131 LIR------------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 131 ~~~------------~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
..+ ..-.+++-++.+..-+| ..+++ |++|+...||+++.. |++..
T Consensus 104 ~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-~QLSG--GQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wL 180 (345)
T COG1118 104 VRKERPSEAEIRARVEELLRLVQLEGLADRYP-AQLSG--GQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWL 180 (345)
T ss_pred ccccCCChhhHHHHHHHHHHHhcccchhhcCc-hhcCh--HHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHH
Confidence 210 00144566777777775 66776 899999999988654 44444
Q ss_pred HHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 179 HSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 179 ~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
..+. +.|+|+|++||.-++ ...+||+++.|.++.+..-++
T Consensus 181 r~~~~~~~~ttvfVTHD~ee------------------a~~ladrvvvl~~G~Ieqvg~ 221 (345)
T COG1118 181 RKLHDRLGVTTVFVTHDQEE------------------ALELADRVVVLNQGRIEQVGP 221 (345)
T ss_pred HHHHHhhCceEEEEeCCHHH------------------HHhhcceEEEecCCeeeeeCC
Confidence 3333 459999999998765 445789999999887555443
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-14 Score=127.83 Aligned_cols=167 Identities=19% Similarity=0.265 Sum_probs=113.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCcc------eecCCC----CH------
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENL------LLAQPD----CG------ 121 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~~------~~~~~~----~~------ 121 (366)
++.|.||||+|||+|+.+++....+.|..|+|++.|++.+. .+++++|++.+.+ .+.... +.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~ 80 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLR 80 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhh
Confidence 47899999999999999999999888999999999988764 4456677765432 221110 11
Q ss_pred HHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccc
Q 017792 122 EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTF 201 (366)
Q Consensus 122 e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~ 201 (366)
.+++..+...+...+++++++|+++.+... + .. . ....++.+...+++.|+|+|+++|.....+
T Consensus 81 ~~~~~~i~~~~~~~~~~~lviD~~~~~~~~----~---~~----~---~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~-- 144 (187)
T cd01124 81 LELIQRLKDAIEEFKAKRVVIDSVSGLLLM----E---QS----T---ARLEIRRLLFALKRFGVTTLLTSEQSGLEG-- 144 (187)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcHHHhhc----C---hH----H---HHHHHHHHHHHHHHCCCEEEEEeccccCCC--
Confidence 134455555556678999999999988631 1 00 1 113445555556667999999999775421
Q ss_pred cCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCC
Q 017792 202 GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP 255 (366)
Q Consensus 202 ~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~ 255 (366)
...+...+.++||.++.|++.. .+. ..++.+.|+|+|.+++
T Consensus 145 -------~~~~~~~~~~~aD~ii~l~~~~---~~~---~~~r~l~i~K~R~~~~ 185 (187)
T cd01124 145 -------TGFGGGDVEYLVDGVIRLRLDE---EGG---RLRRSLSVVKMRGGPH 185 (187)
T ss_pred -------cccCcCceeEeeeEEEEEEEEc---cCC---EEEEEEEEEEccCCCC
Confidence 1123345899999999998652 111 1244699999997765
|
A related protein is found in archaea. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-15 Score=129.41 Aligned_cols=154 Identities=22% Similarity=0.282 Sum_probs=113.0
Q ss_pred cccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccC
Q 017792 38 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTE 111 (366)
Q Consensus 38 ~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~ 111 (366)
..+.|-+.|+.+-- -+++|+++-|+||+|||||||++.+++...+..|.+.+ ++.+... +.+++++|+++|
T Consensus 10 ~Y~~g~~aL~~vs~--~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~-~~~dl~~l~~~~iP~LRR~IGvVFQ 86 (223)
T COG2884 10 AYPGGREALRDVSF--HIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILV-NGHDLSRLKGREIPFLRRQIGVVFQ 86 (223)
T ss_pred hcCCCchhhhCceE--eecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEE-CCeecccccccccchhhheeeeEee
Confidence 44556556766532 48999999999999999999999999999998887544 4433221 467899999999
Q ss_pred cceecCCCCHHHHHHHHHHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------
Q 017792 112 NLLLAQPDCGEQALSLVDTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------- 173 (366)
Q Consensus 112 ~~~~~~~~~~e~~l~~~~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------- 173 (366)
+..+....|+.+++.+....+... -.++|-+-.-...+| .++++ |++|+..+||++...
T Consensus 87 D~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-~~LSG--GEQQRvaIARAiV~~P~vLlADE 163 (223)
T COG2884 87 DFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-SQLSG--GEQQRVAIARAIVNQPAVLLADE 163 (223)
T ss_pred eccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-cccCc--hHHHHHHHHHHHccCCCeEeecC
Confidence 999998888888766543322110 123333333344453 67777 999999999998654
Q ss_pred ------------HHHHHHHhhhcCcEEEEEecCCcc
Q 017792 174 ------------LRKLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 174 ------------L~~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
+.+|...+...|+|||+.+|...-
T Consensus 164 PTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l 199 (223)
T COG2884 164 PTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL 199 (223)
T ss_pred CCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH
Confidence 777777778899999999997664
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-15 Score=144.06 Aligned_cols=160 Identities=18% Similarity=0.236 Sum_probs=119.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+..|+++.|+||||||||||++.++++..+.+|. ++|+++...+ +...+.+++++|+..+++..|+.+++.+-.+...
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~-I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~ 104 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE-ILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG 104 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC
Confidence 6799999999999999999999999999988887 7888887666 5667899999999999999999999877443311
Q ss_pred ----------cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh-h
Q 017792 134 ----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-S 182 (366)
Q Consensus 134 ----------~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l-~ 182 (366)
..-..++-++.+..-.| .+++| |++|+..++|++... ++.-.+.+ +
T Consensus 105 ~~k~ei~~rV~eva~~L~l~~lL~r~P-~~LSG--GQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~ 181 (338)
T COG3839 105 VPKAEIDKRVKEVAKLLGLEHLLNRKP-LQLSG--GQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHE 181 (338)
T ss_pred CchHHHHHHHHHHHHHcCChhHHhcCc-ccCCh--hhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHH
Confidence 01134455666655553 66776 899999999998764 33222222 3
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++|+|++||.-.+ ....+|++..|..+.+..-+.
T Consensus 182 ~l~~T~IYVTHDq~E------------------Amtladri~Vm~~G~i~Q~g~ 217 (338)
T COG3839 182 RLGTTTIYVTHDQVE------------------AMTLADRIVVMNDGRIQQVGT 217 (338)
T ss_pred hcCCcEEEEcCCHHH------------------HHhhCCEEEEEeCCeeeecCC
Confidence 569999999997654 344678888888776555443
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.8e-16 Score=138.83 Aligned_cols=150 Identities=19% Similarity=0.222 Sum_probs=108.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR- 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~- 133 (366)
+++|+++.|+||||||||||++.+++...+..|. +.+++..... -...++|++|+..+++..|+.+++.+......
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~-V~~~g~~v~~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~ 102 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE-VLLDGRPVTG--PGPDIGYVFQEDALLPWLTVLDNVALGLELRGK 102 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCcccCC--CCCCEEEEeccCcccchhhHHhhheehhhcccc
Confidence 6799999999999999999999999999988887 5666654422 23468999999999988888887654332210
Q ss_pred ---------cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HH-HHHHHhhh
Q 017792 134 ---------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LR-KLSHSLSL 183 (366)
Q Consensus 134 ---------~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~-~L~~~l~~ 183 (366)
..-...+-+......+| .+++| |++|+...||+++.. |+ .|...+++
T Consensus 103 ~~~e~~~~a~~~L~~VgL~~~~~~~P-~qLSG--GMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~ 179 (248)
T COG1116 103 SKAEARERAKELLELVGLAGFEDKYP-HQLSG--GMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE 179 (248)
T ss_pred chHhHHHHHHHHHHHcCCcchhhcCc-cccCh--HHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHh
Confidence 00122333444455554 67777 899999999998764 22 33444567
Q ss_pred cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 184 ~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
.+.|||++||..++ .-+++|+++.|..
T Consensus 180 ~~~TvllVTHdi~E------------------Av~LsdRivvl~~ 206 (248)
T COG1116 180 TRKTVLLVTHDVDE------------------AVYLADRVVVLSN 206 (248)
T ss_pred hCCEEEEEeCCHHH------------------HHhhhCEEEEecC
Confidence 89999999998776 4567888887764
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-15 Score=142.66 Aligned_cols=161 Identities=16% Similarity=0.183 Sum_probs=112.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
-+++|++++|+||||||||||++.+++.+.+..|. +++++..... ....+++|+.+|+..++...++.+.+.+...+
T Consensus 29 ~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~-v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~ 107 (306)
T PRK13537 29 HVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGS-ISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRY 107 (306)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHH
Confidence 37799999999999999999999999998888887 5666654432 34567899999998888888998887764432
Q ss_pred HhcCCc----------eEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh
Q 017792 132 IRSGSV----------DVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 181 (366)
Q Consensus 132 ~~~~~~----------~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l 181 (366)
...... ..+-+.....- +-..+++ |++|+...|++++.. ++.+...+
T Consensus 108 ~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~--G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l 184 (306)
T PRK13537 108 FGLSAAAARALVPPLLEFAKLENKADA-KVGELSG--GMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSL 184 (306)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcC-chhhCCH--HHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 110000 00001111000 0123333 777777777777654 66777777
Q ss_pred hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 182 ~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
++.|+|||+++|..++ ++.+||+++.|+++.++..++
T Consensus 185 ~~~g~till~sH~l~e------------------~~~~~d~i~il~~G~i~~~g~ 221 (306)
T PRK13537 185 LARGKTILLTTHFMEE------------------AERLCDRLCVIEEGRKIAEGA 221 (306)
T ss_pred HhCCCEEEEECCCHHH------------------HHHhCCEEEEEECCEEEEECC
Confidence 6679999999998876 667899999999887766654
|
|
| >PRK07773 replicative DNA helicase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.5e-14 Score=151.57 Aligned_cols=155 Identities=15% Similarity=0.157 Sum_probs=111.5
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCHHHHhh----cccc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSLAET----IGVK 109 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~~~~~~----ig~~ 109 (366)
...++|||++.||.+++ |+++|+++.|.|+||+|||+|+++++..+... +..|+|++.|++..+...+. .+++
T Consensus 196 ~~~Gi~TG~~~LD~l~~--Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~R~~s~~~~i~ 273 (886)
T PRK07773 196 LARGVPTGFTELDAMTN--GLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVMRLLSAEAKIK 273 (886)
T ss_pred CCCCccCChhHhccccC--CCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCCC
Confidence 46799999999999885 99999999999999999999999999988754 67899999998866422221 1221
Q ss_pred cC-------------------------cceec--CCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhh
Q 017792 110 TE-------------------------NLLLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 110 ~~-------------------------~~~~~--~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
.+ ++++. ...++.++...+..+.+..+++++|||+++.+..... .+ .
T Consensus 274 ~~~i~~g~l~~~~~~~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~-----~~-~ 347 (886)
T PRK07773 274 LSDMRSGRMSDDDWTRLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLRQEANLGLIVVDYLQLMTSGKK-----YE-N 347 (886)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchhhcCCCCC-----CC-C
Confidence 11 11221 2347888888888887777899999999998752110 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccc
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLST 200 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~ 200 (366)
+ ...+....+.|...+++.+++||+++|+++.++.
T Consensus 348 r---~~ei~~isr~LK~lAkel~vpvi~lsQLnR~~e~ 382 (886)
T PRK07773 348 R---QQEVSEISRHLKLLAKELEVPVVALSQLSRGVEQ 382 (886)
T ss_pred H---HHHHHHHHHHHHHHHHHHCCcEEEecccCcchhc
Confidence 1 1233444444555556789999999999987544
|
|
| >PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.4e-15 Score=130.49 Aligned_cols=152 Identities=24% Similarity=0.356 Sum_probs=82.5
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh----------cCCeEEEEeCCCCCCH--H
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR----------QGGYCVFIDAEHALDP--S 101 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~----------~gg~vl~id~e~~~~~--~ 101 (366)
.....++++++.+|.+++ |++++|+++.|+|++|+|||||+.+++..+.. .+++|+|++.|..... .
T Consensus 9 ~~~~~~~~~~~~~~~li~-g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~ 87 (193)
T PF13481_consen 9 SSFEDLDTGFPPLDWLID-GLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIAR 87 (193)
T ss_dssp ----HHHS------EEET-TEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHH
T ss_pred hhhhhccCCCCCcceeEC-CcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHH
Confidence 456679999999999999 99999999999999999999999999998875 4678999999988542 1
Q ss_pred HHhhccccc---Cc-----------ceecCCC----CHHHHHHHHHHHHhc-CCceEEEEecccccCCCCccCCccchhh
Q 017792 102 LAETIGVKT---EN-----------LLLAQPD----CGEQALSLVDTLIRS-GSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 102 ~~~~ig~~~---~~-----------~~~~~~~----~~e~~l~~~~~~~~~-~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
+...+.-.. ++ +.++... .....+..+...+.. .++++||||++..+.+. ..+ +.
T Consensus 88 rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~-~~~----~~- 161 (193)
T PF13481_consen 88 RLRALLQDYDDDANLFFVDLSNWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG-DEN----SN- 161 (193)
T ss_dssp HHHHHHTTS-HHHHHHHHHH--E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S--TT-----H-
T ss_pred HHHHHhcccCCccceEEeeccccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC-CCC----CH-
Confidence 121111111 11 1111111 124455556666666 67999999999999853 111 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcc
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
...+.+.+.|+++. +++|++||++.|.++.
T Consensus 162 --~~~~~~~~~l~~la---~~~~~~vi~v~H~~K~ 191 (193)
T PF13481_consen 162 --SAVAQLMQELKRLA---KEYGVAVILVHHTNKS 191 (193)
T ss_dssp --HHHHHHHHHHHHHH---HHH--EEEEEEEE---
T ss_pred --HHHHHHHHHHHHHH---HHcCCEEEEEECCCCC
Confidence 11133444455544 6789999999998753
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.9e-15 Score=133.17 Aligned_cols=161 Identities=21% Similarity=0.217 Sum_probs=115.5
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC----CHHHHhhcccccCcce--ecCCC--------
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----DPSLAETIGVKTENLL--LAQPD-------- 119 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~----~~~~~~~ig~~~~~~~--~~~~~-------- 119 (366)
.+++|+.++|+|+||||||||++++.+.+.+..|.+ ++++.... -..+.+++|+++|++. ++.+.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v-~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg 104 (235)
T COG1122 26 EIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV-LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFG 104 (235)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE-EECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhc
Confidence 588999999999999999999999999999998875 78776644 2467888999999873 22221
Q ss_pred ------CHHHHHHHHHH----------------HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHH
Q 017792 120 ------CGEQALSLVDT----------------LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 177 (366)
Q Consensus 120 ------~~e~~l~~~~~----------------~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L 177 (366)
..++....+.. .++.++.+.+.|+++.++.|..-+-+++.......-.+.+...+++|
T Consensus 105 ~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L 184 (235)
T COG1122 105 LENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKL 184 (235)
T ss_pred hhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 22222222221 12445667777888777777666666666555555555555666666
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
. .+.+.|||+++|..+. +..+||+++.|++++++.+++
T Consensus 185 ~---~~~~~tii~~tHd~~~------------------~~~~ad~v~vl~~G~i~~~g~ 222 (235)
T COG1122 185 K---EEGGKTIIIVTHDLEL------------------VLEYADRVVVLDDGKILADGD 222 (235)
T ss_pred H---hcCCCeEEEEeCcHHH------------------HHhhCCEEEEEECCEEeecCC
Confidence 5 3457999999998765 566899999999988777765
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.1e-15 Score=142.02 Aligned_cols=160 Identities=14% Similarity=0.162 Sum_probs=112.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++..... ....+.+|+.+|+..++...++.+++.+...+.
T Consensus 64 i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~-i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~ 142 (340)
T PRK13536 64 VASGECFGLLGPNGAGKSTIARMILGMTSPDAGK-ITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF 142 (340)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceE-EEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc
Confidence 7899999999999999999999999998888887 5666654332 345677999999988888888888876543321
Q ss_pred hcCC----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 133 RSGS----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 133 ~~~~----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
.... ...+-++....-. ...+++ |++|+...|++++.. ++.+...++
T Consensus 143 ~~~~~~~~~~~~~ll~~~~L~~~~~~~-~~~LS~--G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~ 219 (340)
T PRK13536 143 GMSTREIEAVIPSLLEFARLESKADAR-VSDLSG--GMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 219 (340)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhCCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 1000 0000011110111 123433 777777888777653 666666666
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.|.|||+++|..+. +..+||+++.|+++.++..++
T Consensus 220 ~~g~tilisSH~l~e------------------~~~~~d~i~il~~G~i~~~g~ 255 (340)
T PRK13536 220 ARGKTILLTTHFMEE------------------AERLCDRLCVLEAGRKIAEGR 255 (340)
T ss_pred hCCCEEEEECCCHHH------------------HHHhCCEEEEEECCEEEEEcC
Confidence 679999999998775 667899999999888776654
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.3e-15 Score=139.20 Aligned_cols=161 Identities=14% Similarity=0.183 Sum_probs=110.1
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
-+++|++++|+||||||||||++.+++.+.+..|. +++++..... ..+.+.+|+.+|+..++...++.+.+.+...+
T Consensus 15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 93 (302)
T TIGR01188 15 KVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGT-ARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRL 93 (302)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHH
Confidence 37899999999999999999999999998888887 5666543322 34566799999998888778888877654322
Q ss_pred HhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh
Q 017792 132 IRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 181 (366)
Q Consensus 132 ~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l 181 (366)
.... -...+-++....-. ...+++ |++|+...|++++.. +..+...+
T Consensus 94 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 170 (302)
T TIGR01188 94 YGLPKDEAEERAEELLELFELGEAADRP-VGTYSG--GMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRAL 170 (302)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhCCc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 1000 00011111111111 133444 788888888877653 66666666
Q ss_pred hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 182 ~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
++.|+|||+++|.... +..+||+++.|.++.++..++
T Consensus 171 ~~~g~tvi~~sH~~~~------------------~~~~~d~v~~l~~G~i~~~g~ 207 (302)
T TIGR01188 171 KEEGVTILLTTHYMEE------------------ADKLCDRIAIIDHGRIIAEGT 207 (302)
T ss_pred HhCCCEEEEECCCHHH------------------HHHhCCEEEEEECCEEEEECC
Confidence 6669999999998765 566899999999887665543
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.9e-15 Score=140.83 Aligned_cols=160 Identities=18% Similarity=0.224 Sum_probs=110.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---H---HHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---P---SLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~---~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+|+||||||||++.+++...+..|. ++++++.... . .+.+.+|+.+|+..++...++.+++.+.
T Consensus 28 i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~-I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~ 106 (343)
T TIGR02314 28 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS-VIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALP 106 (343)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHH
Confidence 7799999999999999999999999988888886 6677664432 1 2356799999998888778888776543
Q ss_pred HHHHhc----------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 DTLIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ~~~~~~----------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
...... .-...+-+....... ..++++ |++|+...||+++.. +..+.
T Consensus 107 ~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~-~~~LSg--GqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL 183 (343)
T TIGR02314 107 LELDNTPKDEIKRKVTELLALVGLGDKHDSY-PSNLSG--GQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELL 183 (343)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 221000 001111122221222 245555 899999999998765 55555
Q ss_pred HHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 179 HSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 179 ~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.+.+ .++|||+++|..+. +..+||+++.|+++.++..+.
T Consensus 184 ~~l~~~~g~tiiliTH~~~~------------------v~~~~d~v~vl~~G~iv~~g~ 224 (343)
T TIGR02314 184 KEINRRLGLTILLITHEMDV------------------VKRICDCVAVISNGELIEQGT 224 (343)
T ss_pred HHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEcC
Confidence 55544 59999999997764 556789999998887765543
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-14 Score=128.73 Aligned_cols=161 Identities=20% Similarity=0.230 Sum_probs=119.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+++|+++.|.|+||+|||||++.+++...+..|.+ .+++++... ......++++||.-.+++..|++|++..-..
T Consensus 26 v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I-~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~ 104 (237)
T COG0410 26 VERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI-IFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAY 104 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeE-EECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhh
Confidence 67999999999999999999999999999888874 555655432 2345568899999999999999999887544
Q ss_pred HHhcCCceEEEEecccccCCC---------CccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh
Q 017792 131 LIRSGSVDVVVVDSVAALVPK---------GELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 181 (366)
Q Consensus 131 ~~~~~~~~lvviDsl~~l~~~---------~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l 181 (366)
..+........+|.+-.+||+ ..+++ |++|+...+|++... +....+.+
T Consensus 105 ~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSG--GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l 182 (237)
T COG0410 105 ARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSG--GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKEL 182 (237)
T ss_pred cccccccccccHHHHHHHChhHHHHhcCcccCCCh--HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHH
Confidence 333212222237778888872 34444 889988888887654 55556666
Q ss_pred hh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 182 SL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 182 ~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
++ .+.||+++.|.... .-.+||+...|.++++..+|.
T Consensus 183 ~~~~g~tIlLVEQn~~~------------------Al~iaDr~yvle~Griv~~G~ 220 (237)
T COG0410 183 RKEGGMTILLVEQNARF------------------ALEIADRGYVLENGRIVLSGT 220 (237)
T ss_pred HHcCCcEEEEEeccHHH------------------HHHhhCEEEEEeCCEEEEecC
Confidence 64 48899999996543 345789999999888777764
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.3e-15 Score=129.86 Aligned_cols=174 Identities=20% Similarity=0.194 Sum_probs=119.1
Q ss_pred cCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcc
Q 017792 40 STGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENL 113 (366)
Q Consensus 40 ~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~ 113 (366)
|-|-..|+.+=- -|++|++++|+|++|||||||++++.+...+..|. +++++.+... +.+++++|+.+|.+
T Consensus 14 p~~~~aL~~Vnl--~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~-i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~ 90 (258)
T COG3638 14 PGGHQALKDVNL--EINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE-ILFNGVQITKLKGKELRKLRRDIGMIFQQF 90 (258)
T ss_pred CCCceeeeeEeE--EeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcce-EEecccchhccchHHHHHHHHhceeEeccC
Confidence 345555555421 38899999999999999999999999988887776 6666654432 35678899999999
Q ss_pred eecCCCCHHHHHHH--------HHHHHhcC--CceEEEEeccc-------ccCCCCccCCccchhhHHHHHHHHHHH---
Q 017792 114 LLAQPDCGEQALSL--------VDTLIRSG--SVDVVVVDSVA-------ALVPKGELDGEMGDAHMAMQARLMSQA--- 173 (366)
Q Consensus 114 ~~~~~~~~e~~l~~--------~~~~~~~~--~~~lvviDsl~-------~l~~~~~l~~~~g~~~~~~~ar~l~~~--- 173 (366)
.+.+..++-+++-. +..++.-. .-+...+|.+. ++.....+++ |++|+..+||++.+.
T Consensus 91 nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSG--GQQQRVaIARaL~Q~pki 168 (258)
T COG3638 91 NLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSG--GQQQRVAIARALVQQPKI 168 (258)
T ss_pred CcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCc--chhHHHHHHHHHhcCCCE
Confidence 88877776554321 11111100 00111122221 1222456666 999999999998875
Q ss_pred ------------------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 ------------------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 ------------------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+..|....++.|+|||+.-|..+- ...||+++|-|+.++++.+|
T Consensus 169 ILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl------------------A~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 169 ILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL------------------AKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred EecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH------------------HHHHHhhheEecCCcEEEeC
Confidence 444555556789999999996642 56689999999999888876
Q ss_pred c
Q 017792 236 E 236 (366)
Q Consensus 236 ~ 236 (366)
.
T Consensus 231 ~ 231 (258)
T COG3638 231 P 231 (258)
T ss_pred C
Confidence 5
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.3e-15 Score=141.98 Aligned_cols=159 Identities=14% Similarity=0.181 Sum_probs=110.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++...+ +...+.+||.+|+..+++..++.+++.+......
T Consensus 27 i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~-I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~ 105 (356)
T PRK11650 27 VADGEFIVLVGPSGCGKSTLLRMVAGLERITSGE-IWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRG 105 (356)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceE-EEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcC
Confidence 6799999999999999999999999998888886 6777765433 2344789999999999888899888765432100
Q ss_pred c----------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-
Q 017792 134 S----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS- 182 (366)
Q Consensus 134 ~----------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~- 182 (366)
. .-...+-++.+..-. ..++++ |++|+...||+++.. ++.+.+.+.
T Consensus 106 ~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LSg--Gq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~ 182 (356)
T PRK11650 106 MPKAEIEERVAEAARILELEPLLDRK-PRELSG--GQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHR 182 (356)
T ss_pred CCHHHHHHHHHHHHHHcCChhHhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 0 001111223222222 245555 899999999988754 444444444
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.++|+|+++|...+ +..+||+++.|+++++...+
T Consensus 183 ~~g~tii~vTHd~~e------------------a~~l~D~i~vl~~G~i~~~g 217 (356)
T PRK11650 183 RLKTTSLYVTHDQVE------------------AMTLADRVVVMNGGVAEQIG 217 (356)
T ss_pred hcCCEEEEEeCCHHH------------------HHHhCCEEEEEeCCEEEEEC
Confidence 459999999997765 45578888888877765544
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.9e-15 Score=131.04 Aligned_cols=154 Identities=18% Similarity=0.173 Sum_probs=103.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCccee--cCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLL--AQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~~~--~~~~~~e~~l~~~ 128 (366)
+.+|++++|+|++|||||||++.+++...+..|. +++++..... ..+.+.+.+++|++.- .+..++.+++...
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~-I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Ep 108 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGLEKPSSGS-ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEP 108 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCce-EEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhh
Confidence 6799999999999999999999999998887776 6777754433 2567778899988753 2334555443321
Q ss_pred -------------HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH---------------------H
Q 017792 129 -------------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA---------------------L 174 (366)
Q Consensus 129 -------------~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------------L 174 (366)
..++..-... .+...-+ ..+++| |++|+...||++.-. |
T Consensus 109 l~~~~~~~~~~~i~~~L~~VgL~----~~~l~R~-P~eLSG--GQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~Il 181 (252)
T COG1124 109 LRPHGLSKSQQRIAELLDQVGLP----PSFLDRR-PHELSG--GQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQIL 181 (252)
T ss_pred hccCCccHHHHHHHHHHHHcCCC----HHHHhcC-chhcCh--hHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHH
Confidence 1111111111 1222233 255666 888888888876543 3
Q ss_pred HHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
.-|...-++++.|+|||+|.... +.|+||+++.|.++.++..
T Consensus 182 nlL~~l~~~~~lt~l~IsHdl~~------------------v~~~cdRi~Vm~~G~ivE~ 223 (252)
T COG1124 182 NLLLELKKERGLTYLFISHDLAL------------------VEHMCDRIAVMDNGQIVEI 223 (252)
T ss_pred HHHHHHHHhcCceEEEEeCcHHH------------------HHHHhhheeeeeCCeEEEe
Confidence 33333335689999999997654 8899999999998875544
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-14 Score=123.99 Aligned_cols=160 Identities=18% Similarity=0.241 Sum_probs=110.2
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC-CCHHHHhhcccccCcceecCCCCHHHHHHHH----
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDPSLAETIGVKTENLLLAQPDCGEQALSLV---- 128 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~-~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~---- 128 (366)
-++.|+++.|.||+|||||||+..+++...+..|. +++++++. ..+...+-+.+.+|...++...++++++..-
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~-i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~ 99 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGE-ILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG 99 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhccCCCCce-EEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcc
Confidence 37899999999999999999999999999998886 66766543 3345556677888877777777777664321
Q ss_pred ------HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH-HHHHh
Q 017792 129 ------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK-LSHSL 181 (366)
Q Consensus 129 ------~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~-L~~~l 181 (366)
.+.........+-+.+...-.| .++++ |++|+...||.+.+. +.. +....
T Consensus 100 LkL~a~~r~~v~~aa~~vGl~~~~~RLP-~~LSG--GqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~ 176 (231)
T COG3840 100 LKLNAEQREKVEAAAAQVGLAGFLKRLP-GELSG--GQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLC 176 (231)
T ss_pred cccCHHHHHHHHHHHHHhChhhHhhhCc-cccCc--hHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHH
Confidence 0000000112223344444443 56766 899999999887654 333 33444
Q ss_pred hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 182 ~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
.+.+.|+++++|..++ ...++++++++.++++...+
T Consensus 177 ~E~~~TllmVTH~~~D------------------a~~ia~~~~fl~~Gri~~~g 212 (231)
T COG3840 177 DERKMTLLMVTHHPED------------------AARIADRVVFLDNGRIAAQG 212 (231)
T ss_pred HhhCCEEEEEeCCHHH------------------HHHhhhceEEEeCCEEEeec
Confidence 6789999999997765 56678999999988765554
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-14 Score=130.93 Aligned_cols=159 Identities=21% Similarity=0.203 Sum_probs=104.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+..++...++.+.+...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 101 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGE-VLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFP 101 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHH
Confidence 7799999999999999999999999988887787 4566543221 23456799999988777777887776543
Q ss_pred HHHHhcCC-----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 129 DTLIRSGS-----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 129 ~~~~~~~~-----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
........ ...+-+.....-. ...+++ |++|+...||+++.. +.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~ 178 (235)
T cd03261 102 LREHTRLSEEEIREIVLEKLEAVGLRGAEDLY-PAELSG--GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL 178 (235)
T ss_pred HhhccCCCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH
Confidence 21100000 0011111111111 134444 888888888887653 4555
Q ss_pred HHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 178 SHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 178 ~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
...+.+ .++|||+++|..+. +..+||+++.|.++.+...+
T Consensus 179 l~~~~~~~~~tvi~vsH~~~~------------------~~~~~d~v~~l~~G~i~~~g 219 (235)
T cd03261 179 IRSLKKELGLTSIMVTHDLDT------------------AFAIADRIAVLYDGKIVAEG 219 (235)
T ss_pred HHHHHHhcCcEEEEEecCHHH------------------HHHhcCEEEEEECCeEEEec
Confidence 555444 58999999997764 55678999999877654443
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-14 Score=141.07 Aligned_cols=160 Identities=18% Similarity=0.190 Sum_probs=110.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
+++|++++|+||||||||||++.+++.+.+..|. ++++++.... ..+++++|+.+|+..+....++.+++......
T Consensus 26 i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~-I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~ 104 (402)
T PRK09536 26 VREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGT-VLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTP 104 (402)
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcE-EEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccch
Confidence 6799999999999999999999999988888887 5666654332 45677899999988777777777766542110
Q ss_pred ----Hhc-C---------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 132 ----IRS-G---------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 132 ----~~~-~---------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
+.. . -...+-+..+..- +-..+++ |++|+...||++++. ++.+
T Consensus 105 ~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-~~~~LSg--GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~l 181 (402)
T PRK09536 105 HRSRFDTWTETDRAAVERAMERTGVAQFADR-PVTSLSG--GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLEL 181 (402)
T ss_pred hcccccCCCHHHHHHHHHHHHHcCCchhhcC-ChhhCCH--HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH
Confidence 000 0 0011111111111 1234444 889999999988765 6666
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
.+.+.+.+.|||+++|..+. +..+||+++.|+++.++..+.
T Consensus 182 L~~l~~~g~TIIivsHdl~~------------------~~~~adrii~l~~G~iv~~G~ 222 (402)
T PRK09536 182 VRRLVDDGKTAVAAIHDLDL------------------AARYCDELVLLADGRVRAAGP 222 (402)
T ss_pred HHHHHhcCCEEEEEECCHHH------------------HHHhCCEEEEEECCEEEEecC
Confidence 66666678999999998765 556789999998887766554
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.8e-14 Score=124.00 Aligned_cols=162 Identities=21% Similarity=0.237 Sum_probs=116.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC-CCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH-ALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~-~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+++|++.+|+||||+|||||++.+++.+.+.+|.|.|..-.- .+. ..+++..++.+|+..+.-|.++.+++.+-..-.
T Consensus 24 ~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~ 103 (259)
T COG4559 24 LRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPH 103 (259)
T ss_pred ccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccccc
Confidence 789999999999999999999999999999999877654321 222 467888999999998888888887765522111
Q ss_pred hcCCc------------eEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------------H
Q 017792 133 RSGSV------------DVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------------L 174 (366)
Q Consensus 133 ~~~~~------------~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------------L 174 (366)
+.+.. ...-+..+..-. ...+++ |++|+...||.+++. .
T Consensus 104 ~~g~~~~e~~~i~~~ala~~d~~~la~R~-y~~LSG--GEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~t 180 (259)
T COG4559 104 RSGREPEEDERIAAQALAATDLSGLAGRD-YRTLSG--GEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHT 180 (259)
T ss_pred ccCCCchhhHHHHHHHHHHcChhhhhccc-hhhcCc--hHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHH
Confidence 11000 000111222211 234555 899999999999886 5
Q ss_pred HHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCcc
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEE 237 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~ 237 (366)
.++.+.+...|+.|++|-|+.+- -++|||+++.|.+++++..|.+
T Consensus 181 l~laR~la~~g~~V~~VLHDLNL------------------AA~YaDrivll~~Grv~a~g~p 225 (259)
T COG4559 181 LRLARQLAREGGAVLAVLHDLNL------------------AAQYADRIVLLHQGRVIASGSP 225 (259)
T ss_pred HHHHHHHHhcCCcEEEEEccchH------------------HHHhhheeeeeeCCeEeecCCH
Confidence 56666677789999999997642 5789999999999988877653
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-14 Score=139.57 Aligned_cols=160 Identities=18% Similarity=0.205 Sum_probs=111.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++...+ +...+.+|+.+|+..+++..++.+++.+......
T Consensus 27 i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~-I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~ 105 (353)
T TIGR03265 27 VKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGT-IYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRG 105 (353)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceE-EEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcC
Confidence 6699999999999999999999999998888887 5677765433 2345679999999999888899888765422100
Q ss_pred ----------cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh-h
Q 017792 134 ----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-S 182 (366)
Q Consensus 134 ----------~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l-~ 182 (366)
..-...+-++.+..-. ..++++ |++|+...||+++.. ++.+.+.+ +
T Consensus 106 ~~~~~~~~~~~~~l~~l~L~~~~~~~-~~~LSg--Gq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 182 (353)
T TIGR03265 106 MGRAEVAERVAELLDLVGLPGSERKY-PGQLSG--GQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR 182 (353)
T ss_pred CCHHHHHHHHHHHHHHcCCCchhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 0001122222222222 234554 899999999988754 44444443 3
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++|+|+++|...+ +..+||+++.|++++++..++
T Consensus 183 ~~~~tvi~vTHd~~e------------------a~~l~d~i~vl~~G~i~~~g~ 218 (353)
T TIGR03265 183 RLGVTTIMVTHDQEE------------------ALSMADRIVVMNHGVIEQVGT 218 (353)
T ss_pred hcCCEEEEEcCCHHH------------------HHHhCCEEEEEECCEEEEEcC
Confidence 469999999998765 456788888888887665543
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-14 Score=138.73 Aligned_cols=159 Identities=23% Similarity=0.259 Sum_probs=111.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H-HH----HhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-SL----AETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~-~~----~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|+|+||||||||++.+++...+..|. ++++++.... . .+ .+.++|.+|+..+++..|+.+++.+
T Consensus 16 i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~-I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~ 94 (363)
T TIGR01186 16 IAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQ-IFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSL 94 (363)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCCCCceE-EEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHH
Confidence 7799999999999999999999999999988887 6777765432 2 22 5679999999998888899887765
Q ss_pred HHHHHhc----------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~~----------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
...+... .-...+-++...... ...+++ |++|+...||+++.. +..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~-p~~LSG--Gq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~ 171 (363)
T TIGR01186 95 GPELLGWPEQERKEKALELLKLVGLEEYEHRY-PDELSG--GMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDE 171 (363)
T ss_pred HHHHcCCCHHHHHHHHHHHHHhcCCchhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 3322100 001122223322222 234555 889999999988764 5555
Q ss_pred HHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 178 SHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 178 ~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
...+. +.+.|||+++|..+. +..+||+++.|+++.++..+
T Consensus 172 l~~l~~~~~~Tii~vTHd~~e------------------a~~~~drI~vl~~G~iv~~g 212 (363)
T TIGR01186 172 LKKLQATLQKTIVFITHDLDE------------------AIRIGDRIVIMKAGEIVQVG 212 (363)
T ss_pred HHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEeCCEEEeeC
Confidence 55544 458999999998765 44568888888887765544
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-14 Score=129.87 Aligned_cols=153 Identities=17% Similarity=0.248 Sum_probs=101.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++.+.+..|. ++++++.... ..+.+.+++.+|+..++...++.+.+...
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 104 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGK-IRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFP 104 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHH
Confidence 7799999999999999999999999988887786 5666653321 12456799999998777777887776543
Q ss_pred HHHHh-------c---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 DTLIR-------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ~~~~~-------~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
..... . .-...+-+....... ...+++ |++|+...||+++.. +.++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 181 (216)
T TIGR00960 105 LRIIGVPPRDANERVSAALEKVGLEGKAHAL-PMQLSG--GEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLF 181 (216)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 21100 0 000111111111111 134444 888888888887654 55555
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
..+++.+.|||+++|..+. +..+||+++.|+++
T Consensus 182 ~~~~~~~~tii~vsH~~~~------------------~~~~~d~i~~l~~G 214 (216)
T TIGR00960 182 EEFNRRGTTVLVATHDINL------------------VETYRHRTLTLSRG 214 (216)
T ss_pred HHHHHCCCEEEEEeCCHHH------------------HHHhCCEEEEEeCC
Confidence 5555568999999997654 45578888888764
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-14 Score=135.82 Aligned_cols=160 Identities=15% Similarity=0.169 Sum_probs=107.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.... ...+.+.+|+.+|+..++...++.+.+.......
T Consensus 27 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 105 (303)
T TIGR01288 27 IARGECFGLLGPNGAGKSTIARMLLGMISPDRGK-ITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF 105 (303)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc
Confidence 7799999999999999999999999988888787 556654322 2344667999999988777778887765432211
Q ss_pred hcCC----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 133 RSGS----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 133 ~~~~----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
.... ...+-++...... ...+++ |++|+...|++++.. +..+...+.
T Consensus 106 ~~~~~~~~~~~~~ll~~~~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 182 (303)
T TIGR01288 106 GMSTREIEAVIPSLLEFARLESKADVR-VALLSG--GMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 182 (303)
T ss_pred CCCHHHHHHHHHHHHHHCCChhHhcCc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 0000 0011111111111 133444 788888888877654 556666665
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.|.|||+++|..+. +..+||+++.|+++.++..++
T Consensus 183 ~~g~til~~sH~~~~------------------~~~~~d~i~~l~~G~i~~~g~ 218 (303)
T TIGR01288 183 ARGKTILLTTHFMEE------------------AERLCDRLCVLESGRKIAEGR 218 (303)
T ss_pred hCCCEEEEECCCHHH------------------HHHhCCEEEEEECCEEEEEcC
Confidence 679999999998765 566789999998887665543
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.6e-13 Score=114.97 Aligned_cols=157 Identities=24% Similarity=0.315 Sum_probs=105.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhh----cccccCcceecCCC----CHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAET----IGVKTENLLLAQPD----CGEQALSLVDTL 131 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~----ig~~~~~~~~~~~~----~~e~~l~~~~~~ 131 (366)
+++|+|+||+|||||+..++..+...++.++|++.+.......... .....++..+.... ............
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence 4789999999999999999999988899999999998776433211 11122333332222 233333344455
Q ss_pred HhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeecc
Q 017792 132 IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTC 211 (366)
Q Consensus 132 ~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~ 211 (366)
.....+.++|+|++..+.+.. ... .....+.+...+..+...+++.++++|+++|....... ..+ . ..
T Consensus 81 ~~~~~~~~lviDe~~~~~~~~-~~~------~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~--~~~--~-~~ 148 (165)
T cd01120 81 RERGGDDLIILDELTRLVRAL-REI------REGYPGELDEELRELLERARKGGVTVIFTLQVPSGDKG--DPR--L-TR 148 (165)
T ss_pred HhCCCCEEEEEEcHHHHHHHH-HHH------HhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcccc--Ccc--c-cc
Confidence 566789999999999887311 100 00111234566777777777889999999998876332 111 1 55
Q ss_pred CCceeeeeceEEEEEEE
Q 017792 212 GGNALKFYASVRLNIKR 228 (366)
Q Consensus 212 gG~~l~~~ad~~i~l~~ 228 (366)
++..+.++||.++.+++
T Consensus 149 ~~~~~~~~~d~~~~l~~ 165 (165)
T cd01120 149 GAQNLEDIADTVIVLSR 165 (165)
T ss_pred CccceeeecceEEEEeC
Confidence 77789999999998863
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.8e-14 Score=124.07 Aligned_cols=141 Identities=16% Similarity=0.156 Sum_probs=94.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH--hhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHH-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL- 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~--~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~- 131 (366)
+++|++++|.||||||||||++.+++.. .+..|. ++++++......+.+.+++.+|+..++...++.+.+......
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~-i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~ 110 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGE-VLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR 110 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceE-EEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc
Confidence 6799999999999999999999999988 777776 566665443334556789999988777667777765432210
Q ss_pred --------------HhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCc-
Q 017792 132 --------------IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRA- 196 (366)
Q Consensus 132 --------------~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~- 196 (366)
.-..+++++++|....-... .-.+ .+.++...+.+.+.|||+++|...
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~-------------~~~~----~l~~~l~~~~~~~~tiii~sh~~~~ 173 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDS-------------SSAL----QVMSLLRRLADTGRTIICSIHQPSS 173 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCH-------------HHHH----HHHHHHHHHHhCCCEEEEEecCchH
Confidence 01124667777776554410 0111 233333334445899999999764
Q ss_pred ccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 197 KLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 197 ~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
. +..+||+++.|..+.+
T Consensus 174 ~------------------~~~~~d~v~~l~~G~i 190 (194)
T cd03213 174 E------------------IFELFDKLLLLSQGRV 190 (194)
T ss_pred H------------------HHHhcCEEEEEeCCEE
Confidence 2 4456888888876543
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-14 Score=138.14 Aligned_cols=160 Identities=15% Similarity=0.227 Sum_probs=111.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++...+ +...+.+|+.+|+..+++..++.+++.+......
T Consensus 29 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~-I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~ 107 (351)
T PRK11432 29 IKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQ-IFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG 107 (351)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceE-EEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC
Confidence 6799999999999999999999999999888886 6777765433 2345789999999988888898888765322100
Q ss_pred ----------cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-
Q 017792 134 ----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS- 182 (366)
Q Consensus 134 ----------~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~- 182 (366)
..-..++-+..+..-. ..++++ |++|+...||+++.. ++.+.+.+.
T Consensus 108 ~~~~~~~~~v~~~l~~~gl~~~~~r~-~~~LSg--Gq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 184 (351)
T PRK11432 108 VPKEERKQRVKEALELVDLAGFEDRY-VDQISG--GQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQ 184 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 0001111222222222 245555 899999999988764 444444443
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++|+|+++|..++ +..+||+++.|+++++...++
T Consensus 185 ~~g~tii~vTHd~~e------------------~~~laD~i~vm~~G~i~~~g~ 220 (351)
T PRK11432 185 QFNITSLYVTHDQSE------------------AFAVSDTVIVMNKGKIMQIGS 220 (351)
T ss_pred hcCCEEEEEcCCHHH------------------HHHhCCEEEEEECCEEEEEcC
Confidence 459999999998765 445788888888877655443
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-14 Score=139.48 Aligned_cols=159 Identities=13% Similarity=0.215 Sum_probs=110.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++.... +...+.+|+.+|+..+++..++.+++.+......
T Consensus 37 i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~-I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~ 115 (375)
T PRK09452 37 INNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGR-IMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQK 115 (375)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE-EEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcC
Confidence 6799999999999999999999999988887786 6677765432 2345679999999998888899888765321100
Q ss_pred ----------cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-
Q 017792 134 ----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS- 182 (366)
Q Consensus 134 ----------~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~- 182 (366)
..-...+-++.+..-. ...+++ |++|+...||+++.. |+.+.+.+.
T Consensus 116 ~~~~~~~~~~~~~l~~~~l~~~~~~~-p~~LSg--Gq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 192 (375)
T PRK09452 116 TPAAEITPRVMEALRMVQLEEFAQRK-PHQLSG--GQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQR 192 (375)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 0001122222222222 244555 899999999988764 555554443
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.++|+|+++|...+ +..+||+++.|.++++...+
T Consensus 193 ~~g~tiI~vTHd~~e------------------a~~laDri~vl~~G~i~~~g 227 (375)
T PRK09452 193 KLGITFVFVTHDQEE------------------ALTMSDRIVVMRDGRIEQDG 227 (375)
T ss_pred hcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEc
Confidence 469999999998765 45568888888887765544
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-14 Score=138.55 Aligned_cols=160 Identities=18% Similarity=0.207 Sum_probs=112.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC--CeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQG--GYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g--g~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
+++|++++|+||||||||||++.+++...+.. |. ++++++...+ +...+.+|+.+|+..+++..++.+++.+....
T Consensus 28 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~-i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~ 106 (362)
T TIGR03258 28 IEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGR-IAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRA 106 (362)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEE-EEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHH
Confidence 67999999999999999999999999888877 86 6677665433 23456799999999888888998887653321
Q ss_pred Hhc----------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh
Q 017792 132 IRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 181 (366)
Q Consensus 132 ~~~----------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l 181 (366)
... .-...+-++.+..-. ...+++ |++|+...||+++.. |+.+...+
T Consensus 107 ~~~~~~~~~~~v~~~l~~~gL~~~~~~~-~~~LSg--Gq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l 183 (362)
T TIGR03258 107 QKMPKADIAERVADALKLVGLGDAAAHL-PAQLSG--GMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAAL 183 (362)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCchhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 100 001122223222222 234554 899999999988764 55555555
Q ss_pred hhc--CcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 182 SLS--QTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 182 ~~~--~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
.+. |+|+|++||..++ +..+||+++.|++++++..++
T Consensus 184 ~~~~~g~til~vTHd~~e------------------a~~l~dri~vl~~G~i~~~g~ 222 (362)
T TIGR03258 184 HEELPELTILCVTHDQDD------------------ALTLADKAGIMKDGRLAAHGE 222 (362)
T ss_pred HHhCCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEcC
Confidence 443 8999999998765 556789999998887665553
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.5e-14 Score=138.51 Aligned_cols=160 Identities=18% Similarity=0.200 Sum_probs=110.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++...+ +...+.+||.+|+..+++..++.+++.+......
T Consensus 42 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~-I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~ 120 (377)
T PRK11607 42 IYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQ-IMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDK 120 (377)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE-EEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC
Confidence 6799999999999999999999999998888786 6777765432 3456789999999999988899888765322110
Q ss_pred c----------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH-HHhh
Q 017792 134 S----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS-HSLS 182 (366)
Q Consensus 134 ~----------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~-~~l~ 182 (366)
. .-.+.+-+..+..-. ..++++ |++|+...||+++.. ++... ..++
T Consensus 121 ~~~~~~~~~v~~~l~~l~L~~~~~~~-~~~LSg--Gq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 197 (377)
T PRK11607 121 LPKAEIASRVNEMLGLVHMQEFAKRK-PHQLSG--GQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILE 197 (377)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 0 001111122222222 234555 899999999988764 33333 3335
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++|+|+++|...+ +..+||+++.|+++++...++
T Consensus 198 ~~g~tii~vTHd~~e------------------a~~laDri~vl~~G~i~~~g~ 233 (377)
T PRK11607 198 RVGVTCVMVTHDQEE------------------AMTMAGRIAIMNRGKFVQIGE 233 (377)
T ss_pred hcCCEEEEEcCCHHH------------------HHHhCCEEEEEeCCEEEEEcC
Confidence 579999999997765 455788888888776655443
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-14 Score=124.21 Aligned_cols=142 Identities=19% Similarity=0.236 Sum_probs=97.1
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-----CeEEEEeCCCCCCH-----HHHhhcccccCcceecCCCCHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG-----GYCVFIDAEHALDP-----SLAETIGVKTENLLLAQPDCGE 122 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g-----g~vl~id~e~~~~~-----~~~~~ig~~~~~~~~~~~~~~e 122 (366)
..||++++++|.||+|||||||++++........ |. +++++++..++ .+++++|+++|++..++ .++.
T Consensus 28 l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~-v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIy 105 (253)
T COG1117 28 LDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGE-VLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIY 105 (253)
T ss_pred eeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEE-EEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHH
Confidence 4699999999999999999999999988776543 55 56677766552 67889999999887765 6666
Q ss_pred HHHHHHHHH-----------HhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH------------------
Q 017792 123 QALSLVDTL-----------IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------------ 173 (366)
Q Consensus 123 ~~l~~~~~~-----------~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------------ 173 (366)
+++.+-.++ +...-...-.+|.+-.-+..+.+.-+.|++|+..+||+++-.
T Consensus 106 dNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT 185 (253)
T COG1117 106 DNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPIST 185 (253)
T ss_pred HHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhH
Confidence 655443221 111111222345544333233333333899999999987643
Q ss_pred --HHHHHHHhhhcCcEEEEEecCCcc
Q 017792 174 --LRKLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 174 --L~~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
+..|...|+ .+-|||+++|.+..
T Consensus 186 ~kIEeLi~eLk-~~yTIviVTHnmqQ 210 (253)
T COG1117 186 LKIEELITELK-KKYTIVIVTHNMQQ 210 (253)
T ss_pred HHHHHHHHHHH-hccEEEEEeCCHHH
Confidence 677777776 58899999997654
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.9e-14 Score=128.15 Aligned_cols=155 Identities=15% Similarity=0.221 Sum_probs=102.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+++|++++|.|+||||||||++.+++...+..|. +++++..... ..+.+.+++.+|+..++...++.+.+.......
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 106 (218)
T cd03266 28 VKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF-ATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY 106 (218)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCce-EEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc
Confidence 6799999999999999999999999988888887 5566543322 344567999999987777778877765432211
Q ss_pred hcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 133 RSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 133 ~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
... -...+-++...... ...+++ |++++...+|+++.. +.++...+.
T Consensus 107 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~ 183 (218)
T cd03266 107 GLKGDELTARLEELADRLGMEELLDRR-VGGFST--GMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR 183 (218)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHhhh-hhhcCH--HHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence 000 00111111111111 123443 788888888877643 555555555
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+.++|||+++|.... +..+||+++.|.++++
T Consensus 184 ~~~~tii~~tH~~~~------------------~~~~~d~i~~l~~G~i 214 (218)
T cd03266 184 ALGKCILFSTHIMQE------------------VERLCDRVVVLHRGRV 214 (218)
T ss_pred HCCCEEEEEeCCHHH------------------HHHhcCEEEEEECCEE
Confidence 568999999997654 4557888888887654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-14 Score=127.41 Aligned_cols=154 Identities=17% Similarity=0.171 Sum_probs=99.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcce-ecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLL-LAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|.||||||||||++.+++...+..|. +++++.......+.+.+++.+|+.. .....++.+.+........
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~ 101 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLIKESSGS-ILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD 101 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcC
Confidence 6799999999999999999999999988888887 5666654323345567899999853 2234566666543211100
Q ss_pred cC------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhhcCcE
Q 017792 134 SG------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSLSQTI 187 (366)
Q Consensus 134 ~~------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~~~~t 187 (366)
.. -...+-++....-. ...+++ |++|+...||++... +..+...+++.+.|
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 178 (205)
T cd03226 102 AGNEQAETVLKDLDLYALKERH-PLSLSG--GQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKA 178 (205)
T ss_pred ccHHHHHHHHHHcCCchhcCCC-chhCCH--HHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCE
Confidence 00 00111111111111 134444 888888888887764 55666555556899
Q ss_pred EEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEec
Q 017792 188 LIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 230 (366)
Q Consensus 188 VI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~ 230 (366)
||+++|..+. +..+||+++.|+++.
T Consensus 179 ii~~sH~~~~------------------~~~~~d~i~~l~~G~ 203 (205)
T cd03226 179 VIVITHDYEF------------------LAKVCDRVLLLANGA 203 (205)
T ss_pred EEEEeCCHHH------------------HHHhCCEEEEEECCE
Confidence 9999997664 455788888887653
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.5e-14 Score=127.48 Aligned_cols=158 Identities=20% Similarity=0.182 Sum_probs=102.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+..++...++.+.+...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 102 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGS-VLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSG 102 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCce-EEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhh
Confidence 6799999999999999999999999988877787 5666654321 23456789999988777777877766431
Q ss_pred HH--------HHhcC-C---------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 129 DT--------LIRSG-S---------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 129 ~~--------~~~~~-~---------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
.. +.... . ...+-+....... ...+++ |++|+...||+++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEPt~~LD~~~ 179 (241)
T cd03256 103 RLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-ADQLSG--GQQQRVAIARALMQQPKLILADEPVASLDPAS 179 (241)
T ss_pred hcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 10 00000 0 0001011111111 234444 888888888887653
Q ss_pred ---HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+ .++|||+++|..+. +..+||+++.|.++.++..
T Consensus 180 ~~~l~~~l~~~~~~~~~tii~~tH~~~~------------------~~~~~d~v~~l~~G~i~~~ 226 (241)
T cd03256 180 SRQVMDLLKRINREEGITVIVSLHQVDL------------------AREYADRIVGLKDGRIVFD 226 (241)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEee
Confidence 5555555443 58999999997764 5557899999987765443
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.6e-14 Score=128.63 Aligned_cols=158 Identities=17% Similarity=0.162 Sum_probs=103.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHH-HhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSL-AETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~-~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++..... ..+ ...+++.+|+..++...++.+.+.....
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~ 101 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGS-VLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQ 101 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCce-EEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHh
Confidence 6799999999999999999999999988877786 5666653322 122 3458999999887777788777654321
Q ss_pred HHhcC--------------------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 131 LIRSG--------------------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 131 ~~~~~--------------------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
..... -...+-++...... ...+++ |++|+...||++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~llllDEPt~~LD~~~ 178 (236)
T cd03219 102 ARTGSGLLLARARREEREARERAEELLERVGLADLADRP-AGELSY--GQQRRLEIARALATDPKLLLLDEPAAGLNPEE 178 (236)
T ss_pred hccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 10000 00011111111111 133444 788888888877653
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+.++|||+++|..+. +..+||+++.|+++.+...
T Consensus 179 ~~~l~~~l~~~~~~~~tii~vsH~~~~------------------~~~~~d~i~~l~~G~i~~~ 224 (236)
T cd03219 179 TEELAELIRELRERGITVLLVEHDMDV------------------VMSLADRVTVLDQGRVIAE 224 (236)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCHHH------------------HHHhCCEEEEEeCCEEEee
Confidence 555555555578999999997664 5567899999987765443
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.3e-14 Score=121.93 Aligned_cols=137 Identities=16% Similarity=0.229 Sum_probs=95.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHH-------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQAL------- 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l------- 125 (366)
+++|++++|+|+||||||||++.+++.+.+..|. ++++++.... ..+.+.+++.+|+..++...++.+.+
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~ 101 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGE-IKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMK 101 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHH
Confidence 6799999999999999999999999988877776 5666543322 34456789999988777666666653
Q ss_pred ---HHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccccc
Q 017792 126 ---SLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFG 202 (366)
Q Consensus 126 ---~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~ 202 (366)
.++..+. .+++++++|...+-... ...+.+.+.|+.+ .+.+.|||+++|....
T Consensus 102 qrv~laral~--~~p~illlDEPt~~LD~-------------~~~~~l~~~l~~~----~~~g~tiii~th~~~~----- 157 (173)
T cd03230 102 QRLALAQALL--HDPELLILDEPTSGLDP-------------ESRREFWELLREL----KKEGKTILLSSHILEE----- 157 (173)
T ss_pred HHHHHHHHHH--cCCCEEEEeCCccCCCH-------------HHHHHHHHHHHHH----HHCCCEEEEECCCHHH-----
Confidence 2222232 46899999998776620 1122333444444 3348999999997654
Q ss_pred CCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 203 FGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 203 ~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
+..+||+++.|+++
T Consensus 158 -------------~~~~~d~i~~l~~g 171 (173)
T cd03230 158 -------------AERLCDRVAILNNG 171 (173)
T ss_pred -------------HHHhCCEEEEEeCC
Confidence 45578888887754
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.5e-14 Score=126.24 Aligned_cols=155 Identities=19% Similarity=0.163 Sum_probs=100.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|.|+||||||||++.+++...+..|. ++++++.... ..+.+.+++.+|+..++...++.+.+........
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 101 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGE-ITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG 101 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceE-EEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC
Confidence 6799999999999999999999999988877786 5666654322 3345678999998877777788777654321100
Q ss_pred cCC------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhhcCcE
Q 017792 134 SGS------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSLSQTI 187 (366)
Q Consensus 134 ~~~------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~~~~t 187 (366)
... ...+-++...... ...+++ |++|+...+|+++.. +.++...+++.+.|
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 178 (208)
T cd03268 102 IRKKRIDEVLDVVGLKDSAKKK-VKGFSL--GMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178 (208)
T ss_pred CcHHHHHHHHHHcCCHHHHhhh-HhhCCH--HHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence 000 0011111111111 123443 777777777776653 55555555557899
Q ss_pred EEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 188 LIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 188 VI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
||+++|.... +..+||+++.|+++.+
T Consensus 179 ii~~tH~~~~------------------~~~~~d~v~~l~~g~i 204 (208)
T cd03268 179 VLISSHLLSE------------------IQKVADRIGIINKGKL 204 (208)
T ss_pred EEEEcCCHHH------------------HHHhcCEEEEEECCEE
Confidence 9999997654 4557888888887653
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-14 Score=127.82 Aligned_cols=155 Identities=18% Similarity=0.243 Sum_probs=100.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+|+||||||||++.+++.+.+..|. ++++++.... ....+.+++.+|+..++...++.+.+........
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 101 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGE-ILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRG 101 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcC
Confidence 7799999999999999999999999988887887 5666553322 2234578999998877766777776643221100
Q ss_pred -------c---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhh
Q 017792 134 -------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSL 183 (366)
Q Consensus 134 -------~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~ 183 (366)
. .-...+-++....-. ...+++ |++|+...||+++.. +.++...+.+
T Consensus 102 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~ 178 (213)
T cd03259 102 VPKAEIRARVRELLELVGLEGLLNRY-PHELSG--GQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQR 178 (213)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhcC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 0 000111111111111 134444 888888888887654 5555555444
Q ss_pred -cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 184 -SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 184 -~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
.+.|||+++|.... +..+||+++.|.++.+
T Consensus 179 ~~~~tii~~sH~~~~------------------~~~~~d~v~~l~~G~i 209 (213)
T cd03259 179 ELGITTIYVTHDQEE------------------ALALADRIAVMNEGRI 209 (213)
T ss_pred HcCCEEEEEecCHHH------------------HHHhcCEEEEEECCEE
Confidence 58999999997654 5567899998887654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-14 Score=137.26 Aligned_cols=160 Identities=18% Similarity=0.245 Sum_probs=109.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+.+|++++|+||||||||||++.+++...+..|. ++++++.... ....+.++|.+|+..+++..++.+++.+......
T Consensus 25 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~-I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~ 103 (353)
T PRK10851 25 IPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGH-IRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLP 103 (353)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcc
Confidence 6699999999999999999999999998888887 6677664432 2344679999999888888888877764321100
Q ss_pred ---cC-----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHH
Q 017792 134 ---SG-----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSH 179 (366)
Q Consensus 134 ---~~-----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~ 179 (366)
.. -.+.+-++.+..-. ..++++ |++|+...||+++.. ++.+..
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LSg--Gq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~ 180 (353)
T PRK10851 104 RRERPNAAAIKAKVTQLLEMVQLAHLADRY-PAQLSG--GQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLR 180 (353)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 00 01111122222212 234554 889999999988764 555555
Q ss_pred Hhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 180 SLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 180 ~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
.+.+ .++|+|+++|...+ +..+||+++.|+++.++..++
T Consensus 181 ~l~~~~g~tii~vTHd~~e------------------a~~~~Dri~vl~~G~i~~~g~ 220 (353)
T PRK10851 181 QLHEELKFTSVFVTHDQEE------------------AMEVADRVVVMSQGNIEQAGT 220 (353)
T ss_pred HHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEcC
Confidence 5444 58999999998765 455788888898877655543
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.9e-14 Score=135.57 Aligned_cols=159 Identities=18% Similarity=0.245 Sum_probs=105.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---H---HHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---P---SLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~---~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... . .+.+.+|+.+|+..++...++.+.+.+.
T Consensus 28 i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~ 106 (343)
T PRK11153 28 IPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR-VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALP 106 (343)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE-EEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHH
Confidence 6799999999999999999999999998888887 5666554322 1 2356799999998877777887776543
Q ss_pred HHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 DTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
....... -...+-++...... ...+++ |++|+...||+++.. +..+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LSg--Gq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L 183 (343)
T PRK11153 107 LELAGTPKAEIKARVTELLELVGLSDKADRY-PAQLSG--GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL 183 (343)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 2211000 00111111111111 234544 888888888887764 55555
Q ss_pred HHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 179 HSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 179 ~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.+.+ .++|||+++|..+. +..+||+++.|.++.++..+
T Consensus 184 ~~l~~~~g~tiilvtH~~~~------------------i~~~~d~v~~l~~G~i~~~g 223 (343)
T PRK11153 184 KDINRELGLTIVLITHEMDV------------------VKRICDRVAVIDAGRLVEQG 223 (343)
T ss_pred HHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEc
Confidence 55543 58999999998765 55578888888877765543
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.7e-14 Score=126.10 Aligned_cols=158 Identities=15% Similarity=0.174 Sum_probs=102.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+.+|++++|+|+||||||||++.+++.+.+..|. ++++++.... ..+.+.+++.+|+..+....++.+.+.......
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 101 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGR-ATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY 101 (220)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc
Confidence 6799999999999999999999999988887787 5566543321 344567899999987777677777665432110
Q ss_pred hcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 133 RSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 133 ~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
... -...+-++...... ...+++ |++|+...++++... +..+...+.
T Consensus 102 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 178 (220)
T cd03265 102 GVPGAERRERIDELLDFVGLLEAADRL-VKTYSG--GMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLK 178 (220)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH
Confidence 000 00111111111111 133444 788888888776643 445444444
Q ss_pred h-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 183 L-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 183 ~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+ ++++||+++|.... +..+||+++.|.++.+...
T Consensus 179 ~~~~~tvi~~tH~~~~------------------~~~~~d~i~~l~~G~i~~~ 213 (220)
T cd03265 179 EEFGMTILLTTHYMEE------------------AEQLCDRVAIIDHGRIIAE 213 (220)
T ss_pred HhcCCEEEEEeCCHHH------------------HHHhCCEEEEEeCCEEEEe
Confidence 4 48999999997664 5567898888887765443
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.9e-14 Score=133.86 Aligned_cols=159 Identities=17% Similarity=0.230 Sum_probs=109.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+++|++++|.||||||||||++.+++...+..|. +++++..... ..+.+.+|+.+|+..++...++.+.+.+...+.
T Consensus 25 i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~-i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~ 103 (301)
T TIGR03522 25 AQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGS-VQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY 103 (301)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc
Confidence 7799999999999999999999999988888887 5666654322 345567999999988887788888876543321
Q ss_pred hcC------C----ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 133 RSG------S----VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 133 ~~~------~----~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
... . ...+-++....-. ...+++ |++|+...|++++.. ++.+.+.++
T Consensus 104 ~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~ 180 (301)
T TIGR03522 104 GMKGQLLKQRVEEMIELVGLRPEQHKK-IGQLSK--GYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG 180 (301)
T ss_pred CCCHHHHHHHHHHHHHHCCCchHhcCc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc
Confidence 100 0 0011111111111 123443 778887888777653 666666665
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+ +.|||+++|..++ +..+||+++.|+++.+...++
T Consensus 181 ~-~~tiii~sH~l~~------------------~~~~~d~i~~l~~G~i~~~g~ 215 (301)
T TIGR03522 181 K-DKTIILSTHIMQE------------------VEAICDRVIIINKGKIVADKK 215 (301)
T ss_pred C-CCEEEEEcCCHHH------------------HHHhCCEEEEEECCEEEEeCC
Confidence 4 7999999998875 667899999999887766554
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.7e-14 Score=126.91 Aligned_cols=154 Identities=16% Similarity=0.143 Sum_probs=100.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
+.+|++++|+|+||||||||++.+++...+..|. +++++.... ..+.+.+++.+|+..++...++.+.+.........
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 100 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGE-VLFDGKPLD-IAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGL 100 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCCchh-HHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCC
Confidence 6799999999999999999999999988877787 566665432 24456789999988777777887776543221100
Q ss_pred C----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhhc
Q 017792 135 G----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSLS 184 (366)
Q Consensus 135 ~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~~ 184 (366)
. -...+-++...... ...+++ |++++...+++++.. +.++...+.+.
T Consensus 101 ~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~ 177 (210)
T cd03269 101 KKEEARRRIDEWLERLELSEYANKR-VEELSK--GNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA 177 (210)
T ss_pred ChHHHHHHHHHHHHHcCChHHHhCc-HhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 0 00001111111111 123443 777777777776543 55555555556
Q ss_pred CcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 185 QTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 185 ~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
++|||+++|.... +..+||+++.|.++.+
T Consensus 178 ~~tii~~sH~~~~------------------~~~~~d~i~~l~~g~i 206 (210)
T cd03269 178 GKTVILSTHQMEL------------------VEELCDRVLLLNKGRA 206 (210)
T ss_pred CCEEEEECCCHHH------------------HHHhhhEEEEEeCCEE
Confidence 8999999997654 5567888888876643
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.1e-14 Score=122.99 Aligned_cols=138 Identities=20% Similarity=0.291 Sum_probs=93.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC-----CHHHHhhcccccCcceecCCCCHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQALS--- 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~-----~~~~~~~ig~~~~~~~~~~~~~~e~~l~--- 126 (366)
+++|++++|.|+||||||||++.+++.+.+..|. +++++.... ...+.+.+++.+|+..++...++.+.+.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~l 101 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGS-ILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL 101 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecC
Confidence 6799999999999999999999999988877777 556554321 1345667899999877766666665532
Q ss_pred ---------HHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcc
Q 017792 127 ---------LVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 127 ---------~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
++..++ .+++++++|...+-.. . .....+.+.|+++. ++.+.|+|+++|....
T Consensus 102 S~G~~qr~~la~al~--~~p~llilDEP~~~LD----------~---~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~ 163 (178)
T cd03229 102 SGGQQQRVALARALA--MDPDVLLLDEPTSALD----------P---ITRREVRALLKSLQ---AQLGITVVLVTHDLDE 163 (178)
T ss_pred CHHHHHHHHHHHHHH--CCCCEEEEeCCcccCC----------H---HHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH
Confidence 222232 3678999998876652 0 11122333343333 2238999999997654
Q ss_pred cccccCCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 198 LSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 198 ~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
+..+||.++.|.++
T Consensus 164 ------------------~~~~~d~i~~l~~g 177 (178)
T cd03229 164 ------------------AARLADRVVVLRDG 177 (178)
T ss_pred ------------------HHHhcCEEEEEeCC
Confidence 45567888877643
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.9e-14 Score=127.46 Aligned_cols=158 Identities=17% Similarity=0.222 Sum_probs=103.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---H---HHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---P---SLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~---~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++..... . .+.+.+++.+|+..++...++.+.+...
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~ 106 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS-VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP 106 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHH
Confidence 6799999999999999999999999998888887 5666654321 1 2356789999998877767877766542
Q ss_pred HHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 DTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
....... -...+-++...... ...+++ |++|+...+|+++.. +.++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l 183 (233)
T cd03258 107 LEIAGVPKAEIEERVLELLELVGLEDKADAY-PAQLSG--GQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALL 183 (233)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCChhhhhcC-hhhCCH--HHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHH
Confidence 2110000 00111111111111 133444 788888888877653 55555
Q ss_pred HHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 179 HSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 179 ~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
..+++ .++|||+++|..+. +..+||+++.|+++.+...
T Consensus 184 ~~~~~~~~~tvii~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 222 (233)
T cd03258 184 RDINRELGLTIVLITHEMEV------------------VKRICDRVAVMEKGEVVEE 222 (233)
T ss_pred HHHHHHcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 55544 48999999997654 5567899999987765443
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-13 Score=126.36 Aligned_cols=157 Identities=18% Similarity=0.192 Sum_probs=100.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... ..+.+.+++.+|+..++...++.+.+...
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 103 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGS-ILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHG 103 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccE-EEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhc
Confidence 6799999999999999999999999988887887 5666543221 12456799999988777767777665421
Q ss_pred HH--------HHhcC------C----ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 129 DT--------LIRSG------S----VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 129 ~~--------~~~~~------~----~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
.. +.... . ...+-++...... ...+++ |++|+...||+++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~llllDEPt~~LD~~~ 180 (243)
T TIGR02315 104 RLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR-ADQLSG--GQQQRVAIARALAQQPDLILADEPIASLDPKT 180 (243)
T ss_pred ccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 00 00000 0 0011111111111 234444 888888888887653
Q ss_pred ---HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 ---LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 ---L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+..+...+.+ .++|||+++|..+. +..+||.++.|.++.++.
T Consensus 181 ~~~l~~~l~~~~~~~~~tiii~tH~~~~------------------~~~~~d~v~~l~~G~i~~ 226 (243)
T TIGR02315 181 SKQVMDYLKRINKEDGITVIINLHQVDL------------------AKKYADRIVGLKAGEIVF 226 (243)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHH------------------HHHhcCeEEEEECCEEEe
Confidence 4455554443 58999999997654 556789999998765443
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.5e-14 Score=127.10 Aligned_cols=156 Identities=14% Similarity=0.177 Sum_probs=102.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HH-HHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PS-LAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~-~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+.+|++++|+|+||||||||++.+++...+..|. ++++++.... .. ....+++.+|+..++...++.+.+.....
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 101 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGK-ILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLE 101 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHH
Confidence 6799999999999999999999999998888887 5666654321 12 23468999998877777788776654321
Q ss_pred HHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHH
Q 017792 131 LIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHS 180 (366)
Q Consensus 131 ~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~ 180 (366)
..... -...+-++....-. ...+++ |++|+...+|+++.. +.++...
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 178 (232)
T cd03218 102 IRGLSKKEREEKLEELLEEFHITHLRKSK-ASSLSG--GERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKI 178 (232)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 10000 00011111111111 123443 788888888877653 5555555
Q ss_pred hhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 181 l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
+.+.+.|||+++|..+. +..+||+++.|+++.+.
T Consensus 179 ~~~~~~tii~~sH~~~~------------------~~~~~d~i~~l~~G~i~ 212 (232)
T cd03218 179 LKDRGIGVLITDHNVRE------------------TLSITDRAYIIYEGKVL 212 (232)
T ss_pred HHHCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCeEE
Confidence 55668999999997654 56678999999876544
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.8e-14 Score=127.76 Aligned_cols=158 Identities=19% Similarity=0.217 Sum_probs=104.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
+++|++++|+|+||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+..++...++.+.+....
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 102 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGD-LIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGP 102 (240)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHH
Confidence 6799999999999999999999999988887786 6677654322 234567899999887776677777664321
Q ss_pred HHHhcC-----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 130 TLIRSG-----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 130 ~~~~~~-----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
...... -...+-++...... ...+++ |++++...||+++.. +.++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l 179 (240)
T PRK09493 103 LRVRGASKEEAEKQARELLAKVGLAERAHHY-PSELSG--GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVM 179 (240)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCChHHHhcC-hhhcCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 100000 00111111111111 123443 788888888887654 55566
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
..+++.+.|||+++|.... +..+||+++.|.++.++..
T Consensus 180 ~~~~~~~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 217 (240)
T PRK09493 180 QDLAEEGMTMVIVTHEIGF------------------AEKVASRLIFIDKGRIAED 217 (240)
T ss_pred HHHHHcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEee
Confidence 5555668999999997764 5567899999987765443
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-14 Score=127.69 Aligned_cols=144 Identities=19% Similarity=0.246 Sum_probs=108.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI-- 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~-- 132 (366)
+|+|++.++.|+||+||||+.+.+++.+.+..|.+-|.+.+ .......++||.|+.--+++..++.+.+.++..+.
T Consensus 25 v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~--~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm 102 (300)
T COG4152 25 VPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGP--LSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGM 102 (300)
T ss_pred ecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcc--hhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCC
Confidence 78999999999999999999999999999988886665543 34455678999999888888888877655543311
Q ss_pred ------------------------------------------hcCCceEEEEecccccC-CCCccCCccchhhHHHHHHH
Q 017792 133 ------------------------------------------RSGSVDVVVVDSVAALV-PKGELDGEMGDAHMAMQARL 169 (366)
Q Consensus 133 ------------------------------------------~~~~~~lvviDsl~~l~-~~~~l~~~~g~~~~~~~ar~ 169 (366)
--+.+.++++|...+-. | ...
T Consensus 103 ~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDP--------------VN~-- 166 (300)
T COG4152 103 PKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDP--------------VNV-- 166 (300)
T ss_pred cHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCCh--------------hhH--
Confidence 01346667776543322 1 111
Q ss_pred HHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 170 MSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 170 l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.|+.....+++.|.||||++|.++. ++.+||.++.|++++.+..|+
T Consensus 167 --elLk~~I~~lk~~GatIifSsH~Me~------------------vEeLCD~llmL~kG~~V~~G~ 213 (300)
T COG4152 167 --ELLKDAIFELKEEGATIIFSSHRMEH------------------VEELCDRLLMLKKGQTVLYGT 213 (300)
T ss_pred --HHHHHHHHHHHhcCCEEEEecchHHH------------------HHHHhhhhheecCCceEEecc
Confidence 34667777778899999999998876 677899999999998777764
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-13 Score=119.54 Aligned_cols=135 Identities=23% Similarity=0.293 Sum_probs=92.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHH-------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQA------- 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~------- 124 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++.... ..+.+.+++.+|+..++. .++.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~lLS~G~~ 102 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLRPTSGR-VRLDGADISQWDPNELGDHVGYLPQDDELFS-GSIAENILSGGQR 102 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCe-EEECCEEcccCCHHHHHhheEEECCCCcccc-CcHHHHCcCHHHH
Confidence 6799999999999999999999999998888786 5666654322 245667899999886665 365544
Q ss_pred --HHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccccc
Q 017792 125 --LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFG 202 (366)
Q Consensus 125 --l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~ 202 (366)
+.++..+. .+++++++|...+-... .-.+.+...|+.+ ++.++|||+++|....
T Consensus 103 qrv~la~al~--~~p~~lllDEPt~~LD~-------------~~~~~l~~~l~~~----~~~~~tii~~sh~~~~----- 158 (173)
T cd03246 103 QRLGLARALY--GNPRILVLDEPNSHLDV-------------EGERALNQAIAAL----KAAGATRIVIAHRPET----- 158 (173)
T ss_pred HHHHHHHHHh--cCCCEEEEECCccccCH-------------HHHHHHHHHHHHH----HhCCCEEEEEeCCHHH-----
Confidence 22233333 36889999998766520 1112233334333 3458999999997643
Q ss_pred CCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 203 FGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 203 ~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
+. +||+++.|.++
T Consensus 159 -------------~~-~~d~v~~l~~G 171 (173)
T cd03246 159 -------------LA-SADRILVLEDG 171 (173)
T ss_pred -------------HH-hCCEEEEEECC
Confidence 43 58888888754
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.47 E-value=6e-14 Score=126.89 Aligned_cols=153 Identities=20% Similarity=0.230 Sum_probs=99.4
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H----H-HHhhcccccCcceecCCCCHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P----S-LAETIGVKTENLLLAQPDCGEQALS 126 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~----~-~~~~ig~~~~~~~~~~~~~~e~~l~ 126 (366)
-+++|++++|+||||||||||++.+++.+.+..|. +++++..... . . +.+.+++.+|+..++...++.+.+.
T Consensus 26 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 104 (218)
T cd03255 26 SIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE-VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVE 104 (218)
T ss_pred EEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCcee-EEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHH
Confidence 37799999999999999999999999998888887 5666543321 1 1 2456999999888777778877765
Q ss_pred HHHHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 127 LVDTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 127 ~~~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
+........ -...+-++....-. ...+++ |++|+...||+++.. +.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~ 181 (218)
T cd03255 105 LPLLLAGVPKKERRERAEELLERVGLGDRLNHY-PSELSG--GQQQRVAIARALANDPKIILADEPTGNLDSETGKEVME 181 (218)
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcC-hhhcCH--HHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHH
Confidence 432110000 00011111111111 123443 788888888877643 555
Q ss_pred HHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 177 LSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 177 L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
+...+.+ .++|||+++|..+. +. +||+++.|.++
T Consensus 182 ~l~~~~~~~~~tii~~sH~~~~------------------~~-~~d~v~~l~~G 216 (218)
T cd03255 182 LLRELNKEAGTTIVVVTHDPEL------------------AE-YADRIIELRDG 216 (218)
T ss_pred HHHHHHHhcCCeEEEEECCHHH------------------Hh-hhcEEEEeeCC
Confidence 5555554 58999999997653 44 68888888764
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.6e-14 Score=135.68 Aligned_cols=159 Identities=17% Similarity=0.208 Sum_probs=105.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-------HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-------~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++.... ....+.+++.+|+..+++..++.+.+.+
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~-I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~ 99 (352)
T PRK11144 21 LPAQGITAIFGRSGAGKTSLINAISGLTRPQKGR-IVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRY 99 (352)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHh
Confidence 6799999999999999999999999988887786 5666654321 2345679999999888887888877654
Q ss_pred HHHHHhc----CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-
Q 017792 128 VDTLIRS----GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS- 182 (366)
Q Consensus 128 ~~~~~~~----~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~- 182 (366)
....... .-...+-++...... ...+++ |++|+...||+++.. +..+.+.+.
T Consensus 100 ~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LSg--Gq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~ 176 (352)
T PRK11144 100 GMAKSMVAQFDKIVALLGIEPLLDRY-PGSLSG--GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAR 176 (352)
T ss_pred hhhhhhHHHHHHHHHHcCCchhhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 2110000 001111122222222 234554 888888888887754 445554444
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.++|||+++|..+. +..+||+++.|+++++...+
T Consensus 177 ~~g~tii~vTHd~~~------------------~~~~~d~i~~l~~G~i~~~g 211 (352)
T PRK11144 177 EINIPILYVSHSLDE------------------ILRLADRVVVLEQGKVKAFG 211 (352)
T ss_pred hcCCeEEEEecCHHH------------------HHHhCCEEEEEeCCEEEEec
Confidence 358999999998765 45567888888777655443
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-13 Score=126.70 Aligned_cols=157 Identities=17% Similarity=0.197 Sum_probs=102.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-----------HHHHhhcccccCcceecCCCCHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-----------PSLAETIGVKTENLLLAQPDCGEQ 123 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-----------~~~~~~ig~~~~~~~~~~~~~~e~ 123 (366)
+++|++++|+|+||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+..++...++.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 104 (250)
T PRK11264 26 VKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGT-IRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLE 104 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE-EEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHH
Confidence 6799999999999999999999999988777776 5566543211 234567899999987777777777
Q ss_pred HHHHHHHHHhcCC-----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 124 ALSLVDTLIRSGS-----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 124 ~l~~~~~~~~~~~-----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
.+........... ...+-++....-. ...+++ |++|+...||+++..
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS~--Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~ 181 (250)
T PRK11264 105 NIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSY-PRRLSG--GQQQRVAIARALAMRPEVILFDEPTSALDPELVG 181 (250)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCC-hhhCCh--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 6643211100000 0000111111111 233444 888888888887643
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+.++...+.+.+.+||+++|.... +..+||+++.|+++.+..
T Consensus 182 ~l~~~l~~~~~~~~tvi~~tH~~~~------------------~~~~~d~i~~l~~G~i~~ 224 (250)
T PRK11264 182 EVLNTIRQLAQEKRTMVIVTHEMSF------------------ARDVADRAIFMDQGRIVE 224 (250)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhcCEEEEEECCEEEE
Confidence 555555555568999999997654 556789999998765443
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-13 Score=124.25 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=104.1
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHh---hcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ---RQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~---~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
=+.+|++++|+||||||||||++.+++.+. +..|. +++++.......+.+.+++.+|+..++...++.+.+.+...
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~-i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 107 (226)
T cd03234 29 HVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQ-ILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAI 107 (226)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceE-EEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHH
Confidence 377999999999999999999999999887 66776 56666543333456678999999887777788877764322
Q ss_pred HHh-cCCc------eE-E-EEecc--cccC--CCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 131 LIR-SGSV------DV-V-VVDSV--AALV--PKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 131 ~~~-~~~~------~l-v-viDsl--~~l~--~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
... .... .. . .++.+ ..+. ....+++ |++|+...+|+++.. +..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~--G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~ 185 (226)
T cd03234 108 LRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISG--GERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVST 185 (226)
T ss_pred hhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCH--HHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 110 0000 00 0 11111 0111 0123443 788888888887753 5555
Q ss_pred HHHhhhcCcEEEEEecCCc-ccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 178 SHSLSLSQTILIFINQVRA-KLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~-~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
...+.+.+.|||+++|... . +..+||+++.|.+++++
T Consensus 186 l~~~~~~~~tiii~sh~~~~~------------------~~~~~d~i~~l~~G~i~ 223 (226)
T cd03234 186 LSQLARRNRIVILTIHQPRSD------------------LFRLFDRILLLSSGEIV 223 (226)
T ss_pred HHHHHHCCCEEEEEecCCCHH------------------HHHhCCEEEEEeCCEEE
Confidence 5555556899999999752 3 56678999888876543
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.8e-14 Score=135.93 Aligned_cols=159 Identities=17% Similarity=0.223 Sum_probs=107.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++.... ....+.++|.+|+..++...++.+.+.+......
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~-I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~ 104 (369)
T PRK11000 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD-LFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG 104 (369)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE-EEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC
Confidence 6799999999999999999999999988888786 5666654322 2234679999999888888888887764322100
Q ss_pred cC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-
Q 017792 134 SG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS- 182 (366)
Q Consensus 134 ~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~- 182 (366)
.. -...+-++....-. ...+++ |++|+...||+++.. ++.+.+.+.
T Consensus 105 ~~~~~~~~~~~~~l~~lgL~~~~~~~-~~~LSg--Gq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~ 181 (369)
T PRK11000 105 AKKEEINQRVNQVAEVLQLAHLLDRK-PKALSG--GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181 (369)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 00 01111122211111 234554 889999999988764 444444443
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.+.|+|+++|..+. +..+||+++.|+++.+...+
T Consensus 182 ~~g~tvI~vTHd~~~------------------~~~~~d~i~vl~~G~i~~~g 216 (369)
T PRK11000 182 RLGRTMIYVTHDQVE------------------AMTLADKIVVLDAGRVAQVG 216 (369)
T ss_pred HhCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEc
Confidence 459999999997765 45578888888877665544
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.6e-14 Score=125.14 Aligned_cols=153 Identities=18% Similarity=0.279 Sum_probs=99.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+|+||||||||++.+++.+.+..|. ++++++.... ..+.+.+++.+|+..++...++.+.+...
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~ 102 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGT-IRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFA 102 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHH
Confidence 6799999999999999999999999988877786 5666654321 13456799999998777777777766543
Q ss_pred HHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 DTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
....... -...+-++...... ...+++ |++|+...||+++.. +.++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l 179 (214)
T cd03292 103 LEVTGVPPREIRKRVPAALELVGLSHKHRAL-PAELSG--GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLL 179 (214)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-hhhcCH--HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 2110000 00011111111111 133444 788888888887643 55555
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
..+++.++|||+++|.... +..+||.++.|.++
T Consensus 180 ~~~~~~~~tiiivtH~~~~------------------~~~~~d~i~~l~~G 212 (214)
T cd03292 180 KKINKAGTTVVVATHAKEL------------------VDTTRHRVIALERG 212 (214)
T ss_pred HHHHHcCCEEEEEeCCHHH------------------HHHhCCEEEEEeCC
Confidence 5555568999999997654 45578888888754
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-13 Score=126.37 Aligned_cols=160 Identities=14% Similarity=0.140 Sum_probs=105.4
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC------------C----HHHHhhcccccCcceecC
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL------------D----PSLAETIGVKTENLLLAQ 117 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~------------~----~~~~~~ig~~~~~~~~~~ 117 (366)
-+++|++++|+|+||||||||++.+++...+..|. ++++++... . ..+.+.+++.+|+..++.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~ 105 (257)
T PRK10619 27 QANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGS-IVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS 105 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCC
Confidence 37799999999999999999999999988877776 566665331 1 234567999999988777
Q ss_pred CCCHHHHHHHHH-HHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-------------
Q 017792 118 PDCGEQALSLVD-TLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------- 173 (366)
Q Consensus 118 ~~~~e~~l~~~~-~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------- 173 (366)
..++.+.+.... ...... -...+-+.....-.+...+++ |++|+...+|+++..
T Consensus 106 ~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~--G~~qrv~laral~~~p~llllDEPt~~L 183 (257)
T PRK10619 106 HMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSG--GQQQRVSIARALAMEPEVLLFDEPTSAL 183 (257)
T ss_pred CCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 778877764311 100000 001111111100011234444 888888888887754
Q ss_pred -------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 -------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 -------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+++.++|||+++|.... +..+||+++.|.++.++..
T Consensus 184 D~~~~~~l~~~l~~l~~~g~tiiivsH~~~~------------------~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 184 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGF------------------ARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhcCEEEEEECCEEEEe
Confidence 556666666679999999997654 5567899999987765443
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-13 Score=120.63 Aligned_cols=141 Identities=14% Similarity=0.126 Sum_probs=91.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHH-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL- 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~--~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~- 131 (366)
+.+|++++|+|+||||||||++.+++... +..|. ++++++... ..+.+.+++.+|+..++...++.+.+......
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~-i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 107 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGE-ILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR 107 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceE-EEECCEehH-HHhhhceEEecccCccccCCcHHHHHHHHHHHh
Confidence 67999999999999999999999988653 45665 567765433 34456789999887777667887776542110
Q ss_pred -H-------------hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcc
Q 017792 132 -I-------------RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 132 -~-------------~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
+ -..+++++++|...+-... ...+. +..+...+++.++|||+++|..+.
T Consensus 108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~-------------~~~~~----l~~~l~~~~~~~~tiiivtH~~~~ 170 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDS-------------QAAYN----IVRFLKKLADSGQAILCTIHQPSA 170 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCH-------------HHHHH----HHHHHHHHHHcCCEEEEEEcCChH
Confidence 0 1124677777776655420 01122 333333334458999999997641
Q ss_pred cccccCCCCeeeccCCceeeeeceEEEEEEE-ece
Q 017792 198 LSTFGFGGPTEVTCGGNALKFYASVRLNIKR-IGL 231 (366)
Q Consensus 198 ~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~-~~~ 231 (366)
.+..+||+++.|.+ +.+
T Consensus 171 -----------------~~~~~~d~i~~l~~~g~i 188 (192)
T cd03232 171 -----------------SIFEKFDRLLLLKRGGKT 188 (192)
T ss_pred -----------------HHHhhCCEEEEEcCCCeE
Confidence 03446788888876 443
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.2e-14 Score=125.63 Aligned_cols=154 Identities=21% Similarity=0.217 Sum_probs=99.8
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
-+++|++++|+||||||||||++.+++...+..|. +++++..... ..+.+.+++.+|+..++...++.+.+..
T Consensus 24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 102 (214)
T TIGR02673 24 HIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQ-VRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVAL 102 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHH
Confidence 37799999999999999999999999988877787 5666553321 1245678999998877766777776654
Q ss_pred HHHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
........ -...+-+....... ...+++ |++|+...||+++.. +.++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 179 (214)
T TIGR02673 103 PLEVRGKKEREIQRRVGAALRQVGLEHKADAF-PEQLSG--GEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDL 179 (214)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCCH--HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 32110000 00000011110001 123444 788888888877653 5566
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
...+++.+.|||+++|.... +..+||+++.|.++
T Consensus 180 l~~~~~~~~tii~~tH~~~~------------------~~~~~d~i~~l~~G 213 (214)
T TIGR02673 180 LKRLNKRGTTVIVATHDLSL------------------VDRVAHRVIILDDG 213 (214)
T ss_pred HHHHHHcCCEEEEEeCCHHH------------------HHHhcCEEEEecCC
Confidence 65555568999999997664 55568888877653
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-13 Score=117.92 Aligned_cols=162 Identities=17% Similarity=0.198 Sum_probs=97.4
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---CHHHHhhcccccCcceecCCCCHHHHHHHH--
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLV-- 128 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~-- 128 (366)
-+|+|.++.|.||||+|||||+..++.++.+..|. +++++.+.. ...+++.+.+.-|...+....|+++++.+-
T Consensus 23 ~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~-i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRf 101 (252)
T COG4604 23 DIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGE-ITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRF 101 (252)
T ss_pred eecCCceeEEECCCCccHHHHHHHHHHhccccCce-EEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCC
Confidence 38899999999999999999988888887777775 788776543 367888887766655444444444443221
Q ss_pred ---------------HH----------------HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHH
Q 017792 129 ---------------DT----------------LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 177 (366)
Q Consensus 129 ---------------~~----------------~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L 177 (366)
.. -++.++.+..+|.-+.+--...-+.++|-.......+..+.+.|+++
T Consensus 102 PYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrl 181 (252)
T COG4604 102 PYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRL 181 (252)
T ss_pred cccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHH
Confidence 00 01122222211111111111111111221112223444455567776
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCcc
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEE 237 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~ 237 (366)
.. +.|.||+++-|.... .+-|+|.++-|++++++++|.+
T Consensus 182 a~---el~KtiviVlHDINf------------------AS~YsD~IVAlK~G~vv~~G~~ 220 (252)
T COG4604 182 AD---ELGKTIVVVLHDINF------------------ASCYSDHIVALKNGKVVKQGSP 220 (252)
T ss_pred HH---HhCCeEEEEEecccH------------------HHhhhhheeeecCCEEEecCCH
Confidence 64 569999999996643 4558999999999988887754
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-13 Score=123.41 Aligned_cols=153 Identities=19% Similarity=0.229 Sum_probs=100.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... ..+.+.+++.+|+..++...++.+.+....
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~ 101 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGT-IIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAP 101 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHH
Confidence 6799999999999999999999999998888887 5666543321 244667999999887777677777654421
Q ss_pred HHHhcC-----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 130 TLIRSG-----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 130 ~~~~~~-----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
...... -...+-++...... ...+++ |++|+...+|+++.. +.++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l 178 (213)
T cd03262 102 IKVKGMSKAEAEERALELLEKVGLADKADAY-PAQLSG--GQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVM 178 (213)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCHhHhhhC-ccccCH--HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 100000 00011111111111 133444 788888888877653 55666
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
..+++.+.|||+++|.... +..+||.++.|+++
T Consensus 179 ~~~~~~~~tvi~~sh~~~~------------------~~~~~d~i~~l~~g 211 (213)
T cd03262 179 KDLAEEGMTMVVVTHEMGF------------------AREVADRVIFMDDG 211 (213)
T ss_pred HHHHHcCCEEEEEeCCHHH------------------HHHhCCEEEEEeCC
Confidence 5555668999999997664 45578888888754
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-13 Score=123.77 Aligned_cols=155 Identities=20% Similarity=0.260 Sum_probs=101.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHH-H
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTL-I 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~-~ 132 (366)
+.+|++++|.||||||||||++.+++...+..|. ++++++.... ....+.+++.+|+..++...++.+.+...... .
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~-i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 99 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGR-VLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL 99 (211)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccccc
Confidence 7799999999999999999999999998887787 5666654322 12346789999988777667777765432110 0
Q ss_pred ------hc---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-
Q 017792 133 ------RS---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS- 182 (366)
Q Consensus 133 ------~~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~- 182 (366)
.. .-...+-++...... ...+++ |++|+...+|+++.. +.++...+.
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 176 (211)
T cd03298 100 KLTAEDRQAIEVALARVGLAGLEKRL-PGELSG--GERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHA 176 (211)
T ss_pred CccHHHHHHHHHHHHHcCCHHHHhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 00 000111111111111 133444 788888888877653 555555544
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+.++|||+++|..+. +..+||+++.|.++.+
T Consensus 177 ~~~~tii~~sH~~~~------------------~~~~~d~i~~l~~G~i 207 (211)
T cd03298 177 ETKMTVLMVTHQPED------------------AKRLAQRVVFLDNGRI 207 (211)
T ss_pred hcCCEEEEEecCHHH------------------HHhhhCEEEEEECCEE
Confidence 358999999997765 5567899999887654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-13 Score=120.33 Aligned_cols=140 Identities=16% Similarity=0.123 Sum_probs=94.3
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCcc---eecCCCCHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENL---LLAQPDCGEQALS 126 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~---~~~~~~~~e~~l~ 126 (366)
-+++|++++|+|+||||||||++.+++...+..|. ++++++.... ..+.+.+++.+|+. .+....++.+.+.
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~ 100 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGE-ITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIA 100 (182)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHH
Confidence 37799999999999999999999999998888887 5666654322 23456789999874 3555567776654
Q ss_pred HHHH------------HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecC
Q 017792 127 LVDT------------LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 194 (366)
Q Consensus 127 ~~~~------------~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~ 194 (366)
.... ..-..+++++++|...+-... ...+.+.+.++.+ .+.+.|+|+++|.
T Consensus 101 ~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~-------------~~~~~l~~~l~~~----~~~~~tiii~sh~ 163 (182)
T cd03215 101 LSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDV-------------GAKAEIYRLIREL----ADAGKAVLLISSE 163 (182)
T ss_pred HHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCH-------------HHHHHHHHHHHHH----HHCCCEEEEEeCC
Confidence 3210 011246789999988766520 1122333444443 3458999999997
Q ss_pred CcccccccCCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 195 RAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 195 ~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
... +..+||.++.|+++
T Consensus 164 ~~~------------------~~~~~d~v~~l~~G 180 (182)
T cd03215 164 LDE------------------LLGLCDRILVMYEG 180 (182)
T ss_pred HHH------------------HHHhCCEEEEecCC
Confidence 654 55578888888754
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.6e-14 Score=128.52 Aligned_cols=158 Identities=20% Similarity=0.263 Sum_probs=101.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... ....+.+++.+|+..++...++.+.+........
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 103 (239)
T cd03296 25 IPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT-ILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKP 103 (239)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhcc
Confidence 6799999999999999999999999988887787 5666543221 1123568999998877777788776654221100
Q ss_pred c----C----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHH
Q 017792 134 S----G----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSH 179 (366)
Q Consensus 134 ~----~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~ 179 (366)
. . -...+-++....-. ...+++ |++|+...||+++.. +.++..
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 180 (239)
T cd03296 104 RSERPPEAEIRAKVHELLKLVQLDWLADRY-PAQLSG--GQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLR 180 (239)
T ss_pred ccccCCHHHHHHHHHHHHHHcCChhhhhcC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 0 0 00000111111111 123444 888888888887654 555555
Q ss_pred Hhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 180 SLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 180 ~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
.+++ .++|||+++|..+. +..+||+++.|.++.+...
T Consensus 181 ~~~~~~~~tvii~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 218 (239)
T cd03296 181 RLHDELHVTTVFVTHDQEE------------------ALEVADRVVVMNKGRIEQV 218 (239)
T ss_pred HHHHHcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCeEEEe
Confidence 5544 48999999997654 4567899999987654433
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.7e-14 Score=135.00 Aligned_cols=159 Identities=17% Similarity=0.236 Sum_probs=105.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-------HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-------~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++.... ..+.+.+++.+|+..++...++.+.+.+
T Consensus 20 i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~-I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~ 98 (354)
T TIGR02142 20 LPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGE-IVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRY 98 (354)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHH
Confidence 6799999999999999999999999998887787 5566554321 1345679999999888877888877654
Q ss_pred HHHHHhcC--------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHH
Q 017792 128 VDTLIRSG--------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSH 179 (366)
Q Consensus 128 ~~~~~~~~--------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~ 179 (366)
........ -...+-++...... ...+++ |++|+...||+++.. +..+..
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LSg--GqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~ 175 (354)
T TIGR02142 99 GMKRARPSERRISFERVIELLGIGHLLGRL-PGRLSG--GEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLE 175 (354)
T ss_pred HhhccChhHHHHHHHHHHHHcCChhHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHH
Confidence 22110000 00111112111111 234554 888888888887753 455555
Q ss_pred Hhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 180 SLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 180 ~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
.+.+ .++|||+++|..+. +..+||+++.|.++.+...+
T Consensus 176 ~l~~~~g~tiiivtH~~~~------------------~~~~~d~i~~l~~G~i~~~g 214 (354)
T TIGR02142 176 RLHAEFGIPILYVSHSLQE------------------VLRLADRVVVLEDGRVAAAG 214 (354)
T ss_pred HHHHhcCCEEEEEecCHHH------------------HHHhCCEEEEEeCCEEEEEC
Confidence 5444 48999999997765 44567888888777655443
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-13 Score=131.49 Aligned_cols=158 Identities=18% Similarity=0.208 Sum_probs=102.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC--------------------------CC-HHHHhhcc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--------------------------LD-PSLAETIG 107 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~--------------------------~~-~~~~~~ig 107 (366)
+.+|++++|+|+||||||||++.+++.+.+..|. +++++... .. ..+.+.+|
T Consensus 30 i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 108 (305)
T PRK13651 30 INQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGT-IEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVG 108 (305)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE-EEEeceecccccccccccccccccccccccccccchHHHHHhceE
Confidence 6799999999999999999999999998888887 45543321 01 24567799
Q ss_pred cccCcc--eecCCCCHHHHHHHHHHHHh----------cCCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH-
Q 017792 108 VKTENL--LLAQPDCGEQALSLVDTLIR----------SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA- 173 (366)
Q Consensus 108 ~~~~~~--~~~~~~~~e~~l~~~~~~~~----------~~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~- 173 (366)
|.+|++ .++ ..++.+.+.+...... ..-...+-++ ....-. ...+++ |++|+...|++++..
T Consensus 109 ~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~~LSg--GqkqrvalA~aL~~~P 184 (305)
T PRK13651 109 VVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRS-PFELSG--GQKRRVALAGILAMEP 184 (305)
T ss_pred EEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC-hhhCCH--HHHHHHHHHHHHHhCC
Confidence 999975 233 3467666543211100 0001111111 111111 234444 888888888887764
Q ss_pred -------------------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 -------------------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 -------------------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+++.|+|||+++|..+. +..+||+++.|+++.++..
T Consensus 185 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~------------------~~~~adrv~vl~~G~i~~~ 246 (305)
T PRK13651 185 DFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDN------------------VLEWTKRTIFFKDGKIIKD 246 (305)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHH------------------HHHhCCEEEEEECCEEEEE
Confidence 556666666679999999997764 5567999999988765544
Q ss_pred C
Q 017792 235 G 235 (366)
Q Consensus 235 ~ 235 (366)
+
T Consensus 247 g 247 (305)
T PRK13651 247 G 247 (305)
T ss_pred C
Confidence 3
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-13 Score=125.06 Aligned_cols=158 Identities=17% Similarity=0.197 Sum_probs=103.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+++|++++|+|+||||||||++.+++...+..|. ++++++.... ..+.+.+++.+|+..++...++.+.+.....
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 104 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGN-IIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQ 104 (241)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhh
Confidence 6799999999999999999999999998888886 5666654322 1234568999998877776777766543211
Q ss_pred HHhcCC-----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHH
Q 017792 131 LIRSGS-----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSH 179 (366)
Q Consensus 131 ~~~~~~-----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~ 179 (366)
...... ...+-++..... +...+++ |++|+...||++... +.++..
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 181 (241)
T PRK10895 105 IRDDLSAEQREDRANELMEEFHIEHLRDS-MGQSLSG--GERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIE 181 (241)
T ss_pred cccccCHHHHHHHHHHHHHHcCCHHHhhc-chhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 100000 000001111111 1233444 788888888877543 556666
Q ss_pred HhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 180 SLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 180 ~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
.+++.+.|||+++|.... +..+||+++.|.++.+...
T Consensus 182 ~~~~~g~tiii~sH~~~~------------------~~~~~d~v~~l~~G~i~~~ 218 (241)
T PRK10895 182 HLRDSGLGVLITDHNVRE------------------TLAVCERAYIVSQGHLIAH 218 (241)
T ss_pred HHHhcCCEEEEEEcCHHH------------------HHHhcCEEEEEeCCeEEee
Confidence 666679999999997654 5567899999987765443
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-13 Score=125.04 Aligned_cols=157 Identities=16% Similarity=0.191 Sum_probs=102.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHH-HH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDT-LI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~-~~ 132 (366)
+.+|++++|.||||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+..++...++.+.+..... ..
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~ 99 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGS-IKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL 99 (213)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccC
Confidence 6799999999999999999999999998888887 5666654322 2345679999999887777777766543210 00
Q ss_pred h------c---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhh
Q 017792 133 R------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSL 183 (366)
Q Consensus 133 ~------~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~ 183 (366)
. . .-...+-++...... ...+++ |++|+...+|+++.. +.++...+.+
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~ 176 (213)
T TIGR01277 100 KLNAEQQEKVVDAAQQVGIADYLDRL-PEQLSG--GQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCS 176 (213)
T ss_pred CccHHHHHHHHHHHHHcCcHHHhhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 0 0 000111111111111 133444 788888888877654 5555555544
Q ss_pred -cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 184 -SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 184 -~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
.++|||+++|.... +..+||.++.|.++++..
T Consensus 177 ~~~~tii~vsh~~~~------------------~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 177 ERQRTLLMVTHHLSD------------------ARAIASQIAVVSQGKIKV 209 (213)
T ss_pred hcCCEEEEEeCCHHH------------------HHhhcCeEEEEECCeEEE
Confidence 48999999997654 456789999988765443
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-13 Score=127.68 Aligned_cols=158 Identities=20% Similarity=0.209 Sum_probs=102.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H----HHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P----SLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~----~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+|+||||||||++.+++...+..|. +++++..... . .+.+.+++.+|+..++...++.+.+...
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~ 108 (269)
T PRK11831 30 VPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGE-ILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYP 108 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHH
Confidence 7799999999999999999999999998887787 5666643321 1 2345689999998777777887776542
Q ss_pred HHHHhcCC-----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 129 DTLIRSGS-----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 129 ~~~~~~~~-----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
........ ...+-+....... ...+++ |++|+...||+++.. +.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LSg--Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 185 (269)
T PRK11831 109 LREHTQLPAPLLHSTVMMKLEAVGLRGAAKLM-PSELSG--GMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKL 185 (269)
T ss_pred HHHccCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 11100000 0111111111111 134444 788888888887654 5555
Q ss_pred HHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 178 SHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 178 ~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
...+.+ .++|||+++|.... +..+||+++.|.++.+...
T Consensus 186 l~~~~~~~g~tiiivsH~~~~------------------~~~~~d~v~~l~~G~i~~~ 225 (269)
T PRK11831 186 ISELNSALGVTCVVVSHDVPE------------------VLSIADHAYIVADKKIVAH 225 (269)
T ss_pred HHHHHHhcCcEEEEEecCHHH------------------HHHhhCEEEEEECCEEEEe
Confidence 555544 48999999997654 5567888888887654433
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.8e-14 Score=125.82 Aligned_cols=159 Identities=20% Similarity=0.217 Sum_probs=102.4
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H-H-HHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-S-LAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~-~-~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
-+++|++++|+||||||||||++.+++...+..|. +++++..... . . ..+.+++.+|+..++...++.+.+....
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~ 100 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGS-IRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGA 100 (222)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHh
Confidence 37799999999999999999999999988888887 5666543321 1 2 2456899999887777777777665432
Q ss_pred HHHhcCCc--eE-EEEecc---cccC--CCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh
Q 017792 130 TLIRSGSV--DV-VVVDSV---AALV--PKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 181 (366)
Q Consensus 130 ~~~~~~~~--~l-vviDsl---~~l~--~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l 181 (366)
........ .. -+++.+ .... +...+++ |++|+...+|++... +.++...+
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 178 (222)
T cd03224 101 YARRRAKRKARLERVYELFPRLKERRKQLAGTLSG--GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL 178 (222)
T ss_pred hhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCH--HHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 21100000 00 001111 1111 1123444 788888888877653 55555555
Q ss_pred hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 182 ~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
.+.++|||+++|..+. +..+||+++.|+++.+..
T Consensus 179 ~~~~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i~~ 212 (222)
T cd03224 179 RDEGVTILLVEQNARF------------------ALEIADRAYVLERGRVVL 212 (222)
T ss_pred HHCCCEEEEEeCCHHH------------------HHHhccEEEEeeCCeEEE
Confidence 5578999999997654 556789998888765443
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-13 Score=129.26 Aligned_cols=159 Identities=15% Similarity=0.141 Sum_probs=102.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcce-ecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLL-LAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~~~ 130 (366)
+.+|++++|+|+||||||||++.+++.+.+..|. +++++..... ..+...+|+.+|++. .....++.+.+.+...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~ 106 (274)
T PRK13647 28 IPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGR-VKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPV 106 (274)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceE-EEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHH
Confidence 6799999999999999999999999988887786 5666654322 345567999999862 2233566666543211
Q ss_pred HHh-------c---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHH
Q 017792 131 LIR-------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHS 180 (366)
Q Consensus 131 ~~~-------~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~ 180 (366)
... . .-...+-+.....-. ...+++ |++|+...||+++.. +..+...
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LSg--G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 183 (274)
T PRK13647 107 NMGLDKDEVERRVEEALKAVRMWDFRDKP-PYHLSY--GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDR 183 (274)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCHHHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 000 0 000011111111111 134444 788888888887664 5566655
Q ss_pred hhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 181 l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+++.|+|||+++|..+. +..+||+++.|+++.++..+
T Consensus 184 ~~~~g~tili~tH~~~~------------------~~~~~d~i~~l~~G~i~~~g 220 (274)
T PRK13647 184 LHNQGKTVIVATHDVDL------------------AAEWADQVIVLKEGRVLAEG 220 (274)
T ss_pred HHHCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEC
Confidence 55569999999997764 45679999999887655444
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-13 Score=125.28 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=101.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH-----hhcCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA-----QRQGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~-----~~~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++.. .+..|. ++++++.... ..+.+.+++.+|+..++ ..++.+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~ 100 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGE-VLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDN 100 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeE-EEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHH
Confidence 6799999999999999999999999998 777776 5666654221 23456789999988776 6777776
Q ss_pred HHHHHHHHhc-----------CCceEEEEecccccCC-CCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 125 LSLVDTLIRS-----------GSVDVVVVDSVAALVP-KGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 125 l~~~~~~~~~-----------~~~~lvviDsl~~l~~-~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
+......... .-...+-++....-.+ ...+++ |++|+...||+++..
T Consensus 101 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg--G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~ 178 (227)
T cd03260 101 VAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSG--GQQQRLCLARALANEPEVLLLDEPTSALDPISTA 178 (227)
T ss_pred HHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 6542211000 0001111111100010 134544 888888888887654
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+. .|||+++|.... +..+||+++.|.++.++..
T Consensus 179 ~l~~~l~~~~~~-~tii~~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 179 KIEELIAELKKE-YTIVIVTHNMQQ------------------AARVADRTAFLLNGRLVEF 221 (227)
T ss_pred HHHHHHHHHhhC-cEEEEEeccHHH------------------HHHhCCEEEEEeCCEEEEe
Confidence 55555555555 899999997654 4567899999987765433
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-13 Score=134.21 Aligned_cols=159 Identities=18% Similarity=0.160 Sum_probs=107.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CH-H----HHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP-S----LAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~-~----~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.... +. . +.+.++|.+|+..++...++.+.+.+
T Consensus 51 i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~-I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~ 129 (400)
T PRK10070 51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQ-VLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAF 129 (400)
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCE-EEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHH
Confidence 6799999999999999999999999998888887 567765432 21 1 23479999999888877888887765
Q ss_pred HHHHHhc----------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~~----------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
....... .-...+-++....-. ..++++ |++|+...||+++.. +..+
T Consensus 130 ~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~-~~~LSg--Gq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~ 206 (400)
T PRK10070 130 GMELAGINAEERREKALDALRQVGLENYAHSY-PDELSG--GMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDE 206 (400)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCChhhhcC-cccCCH--HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH
Confidence 3221000 001111122221111 234554 888988888887764 5555
Q ss_pred HHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 178 SHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 178 ~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
...+. +.++|||+++|..+. +..+||+++.|+++.+...+
T Consensus 207 L~~l~~~~g~TIIivTHd~~~------------------~~~~~Dri~vL~~G~i~~~g 247 (400)
T PRK10070 207 LVKLQAKHQRTIVFISHDLDE------------------AMRIGDRIAIMQNGEVVQVG 247 (400)
T ss_pred HHHHHHHCCCeEEEEECCHHH------------------HHHhCCEEEEEECCEEEecC
Confidence 55544 468999999997765 45578888888887765544
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-13 Score=124.61 Aligned_cols=155 Identities=16% Similarity=0.220 Sum_probs=98.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|.|+||||||||++.+++.+.+.+|. +++++..... ....+.+++.+|+..++...++.+.+........
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 101 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGR-IYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRK 101 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcC
Confidence 6799999999999999999999999988888887 5666543322 1123568999998877666677776654211100
Q ss_pred cC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhh
Q 017792 134 SG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSL 183 (366)
Q Consensus 134 ~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~ 183 (366)
.. -...+-++...... ...+++ |++|+...||++... +..+...+.+
T Consensus 102 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 178 (213)
T cd03301 102 VPKDEIDERVREVAELLQIEHLLDRK-PKQLSG--GQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQ 178 (213)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 00 00111111111111 133444 788888888877653 4455544444
Q ss_pred -cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 184 -SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 184 -~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
.++|||+++|.... +..+||+++.|.++.+
T Consensus 179 ~~~~tvi~~sH~~~~------------------~~~~~d~i~~l~~g~~ 209 (213)
T cd03301 179 RLGTTTIYVTHDQVE------------------AMTMADRIAVMNDGQI 209 (213)
T ss_pred HcCCEEEEEeCCHHH------------------HHHhcCeEEEEECCEE
Confidence 58999999997654 4556788888876643
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-13 Score=123.53 Aligned_cols=157 Identities=15% Similarity=0.098 Sum_probs=101.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++.... ..+.+.+++.+|+..++...++.+.+.......
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~ 103 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGT-AYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK 103 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHc
Confidence 6799999999999999999999999998888887 5566554322 345567999999887776677777665432110
Q ss_pred hcC------C----ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 133 RSG------S----VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 133 ~~~------~----~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
... . ...+-++...... ...+++ |++|+...+|+++.. +.++...+.
T Consensus 104 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 180 (220)
T cd03263 104 GLPKSEIKEEVELLLRVLGLTDKANKR-ARTLSG--GMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR 180 (220)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHhCh-hhhCCH--HHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 000 0 0001111111111 133443 788888888876653 445454444
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+ +.|||+++|..+. +..+||+++.|..+.+...
T Consensus 181 ~-~~tii~~sH~~~~------------------~~~~~d~i~~l~~g~i~~~ 213 (220)
T cd03263 181 K-GRSIILTTHSMDE------------------AEALCDRIAIMSDGKLRCI 213 (220)
T ss_pred c-CCEEEEEcCCHHH------------------HHHhcCEEEEEECCEEEec
Confidence 4 5899999997654 5567899998887765443
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.8e-13 Score=131.73 Aligned_cols=80 Identities=20% Similarity=0.291 Sum_probs=63.0
Q ss_pred ChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC-C-C--HHHHhhcccccCcceecC
Q 017792 42 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-L-D--PSLAETIGVKTENLLLAQ 117 (366)
Q Consensus 42 G~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~-~-~--~~~~~~ig~~~~~~~~~~ 117 (366)
|+-.+|.+-- -+++|+|.+|.|+||+|||||+..+.+.+++..|. +++++... + . ...+..+|+++|++.+++
T Consensus 16 ~~~And~V~l--~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~Ge-I~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 16 GVVANDDVSL--SVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE-IRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CEEecCceee--eecCCcEEEEeccCCCCHHHHHHHHhCcccCCcce-EEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 6666666532 58899999999999999999999999999999887 77777643 2 2 345566899999998887
Q ss_pred CCCHHHH
Q 017792 118 PDCGEQA 124 (366)
Q Consensus 118 ~~~~e~~ 124 (366)
..|+.|+
T Consensus 93 ~lTV~EN 99 (501)
T COG3845 93 TLTVAEN 99 (501)
T ss_pred ccchhhh
Confidence 7776554
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-13 Score=129.76 Aligned_cols=158 Identities=19% Similarity=0.190 Sum_probs=104.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-------HHHHhhcccccCcc--eecCCCCHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENL--LLAQPDCGEQAL 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-------~~~~~~ig~~~~~~--~~~~~~~~e~~l 125 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++.... ..+...+++.+|+. .++ +.++.+.+
T Consensus 30 i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l 107 (287)
T PRK13641 30 LEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGT-ITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDV 107 (287)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHH
Confidence 7799999999999999999999999988888886 6777764321 23456789999985 233 45777766
Q ss_pred HHHHHHHhc----------CCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH--------------------H
Q 017792 126 SLVDTLIRS----------GSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------L 174 (366)
Q Consensus 126 ~~~~~~~~~----------~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L 174 (366)
.+....... .-...+-++ .+.... ...+++ |++|+...||+++.. +
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~~LSg--Gq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l 184 (287)
T PRK13641 108 EFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKS-PFELSG--GQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEM 184 (287)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH
Confidence 532211000 000111111 111111 234444 888888888887654 6
Q ss_pred HHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
.++...+++.|.|||+++|..+. +..+||+++.|+++.++..+
T Consensus 185 ~~~l~~l~~~g~tvlivsH~~~~------------------~~~~~d~v~~l~~G~i~~~g 227 (287)
T PRK13641 185 MQLFKDYQKAGHTVILVTHNMDD------------------VAEYADDVLVLEHGKLIKHA 227 (287)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEeC
Confidence 66666666669999999997764 56679999999887655444
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-13 Score=129.30 Aligned_cols=159 Identities=17% Similarity=0.190 Sum_probs=104.5
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC-------CHHHHhhcccccCcc--eecCCCCHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-------DPSLAETIGVKTENL--LLAQPDCGEQA 124 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~-------~~~~~~~ig~~~~~~--~~~~~~~~e~~ 124 (366)
=|++|++++|+|+||||||||++.+++.+.+..|. +++++.... ...+.+.+|+.+|+. .++. .++.+.
T Consensus 28 ~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~ 105 (288)
T PRK13643 28 EVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGK-VTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKD 105 (288)
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE-EEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHH
Confidence 37799999999999999999999999998888886 677765432 124567899999986 3443 466666
Q ss_pred HHHHHHHHhc----------CCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 125 LSLVDTLIRS----------GSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 125 l~~~~~~~~~----------~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
+.+....... .-...+-++ .+.... ...+++ |++|+...|++++..
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-~~~LSg--GqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~ 182 (288)
T PRK13643 106 VAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKS-PFELSG--GQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIE 182 (288)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCC-cccCCH--HHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHH
Confidence 5443211000 000111111 111111 233444 888888888887764
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+..+...+++.+.|||+++|..+. +..+||+++.|.++.++..+
T Consensus 183 l~~~l~~l~~~g~til~vtHd~~~------------------~~~~~dri~~l~~G~i~~~g 226 (288)
T PRK13643 183 MMQLFESIHQSGQTVVLVTHLMDD------------------VADYADYVYLLEKGHIISCG 226 (288)
T ss_pred HHHHHHHHHHCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEEEC
Confidence 555555555669999999997754 45578999999887655443
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-13 Score=125.97 Aligned_cols=157 Identities=18% Similarity=0.208 Sum_probs=113.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-------HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-------~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
++.|+|.+|.|-+|||||||.+++.+++.+..|. +++++++... ..+.+++++++|++-+.+..|+.++..+
T Consensus 51 v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~-ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~f 129 (386)
T COG4175 51 VEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGE-ILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAF 129 (386)
T ss_pred ecCCeEEEEEecCCCCHHHHHHHHhccCCCCCce-EEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhc
Confidence 7799999999999999999999999999998887 6777776543 2457789999999999988888776544
Q ss_pred HHHH----------HhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH------------------------
Q 017792 128 VDTL----------IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------------------ 173 (366)
Q Consensus 128 ~~~~----------~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------------------ 173 (366)
-.+. .......++-++....-+| .+++| |.+|+...||+++..
T Consensus 130 GLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp-~eLSG--GMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQde 206 (386)
T COG4175 130 GLEVQGVPKAEREERALEALELVGLEGYADKYP-NELSG--GMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDE 206 (386)
T ss_pred ceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-ccccc--hHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHH
Confidence 1110 0011234555666666664 67877 899999999998764
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
|..|. ++.+.|||||+|..++ .-.+-|++-.|+.++++..|+
T Consensus 207 Ll~Lq---~~l~KTIvFitHDLdE------------------AlriG~rIaimkdG~ivQ~Gt 248 (386)
T COG4175 207 LLELQ---AKLKKTIVFITHDLDE------------------ALRIGDRIAIMKDGEIVQVGT 248 (386)
T ss_pred HHHHH---HHhCCeEEEEecCHHH------------------HHhccceEEEecCCeEEEeCC
Confidence 44444 4568999999998876 222345666666666666554
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-13 Score=123.03 Aligned_cols=153 Identities=19% Similarity=0.199 Sum_probs=97.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcce-ecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLL-LAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~~~ 130 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++.... ..+.+.+++.+|+.. .....++.+.+.....
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~ 102 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGE-VLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLE 102 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHH
Confidence 6799999999999999999999999988887887 5566543221 345677999999863 2345577666543211
Q ss_pred HHh-------c---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHH
Q 017792 131 LIR-------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHS 180 (366)
Q Consensus 131 ~~~-------~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~ 180 (366)
... . .-...+-++....-. ...+++ |++|+...+|+++.. +..+...
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 179 (211)
T cd03225 103 NLGLPEEEIEERVEEALELVGLEGLRDRS-PFTLSG--GQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKK 179 (211)
T ss_pred HcCCCHHHHHHHHHHHHHHcCcHhhhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 000 0 000011111111111 234444 888888888887654 5555555
Q ss_pred hhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 181 l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
+.+.++|||+++|..+. +..+||+++.|.++
T Consensus 180 ~~~~~~tvi~~sH~~~~------------------~~~~~d~i~~l~~G 210 (211)
T cd03225 180 LKAEGKTIIIVTHDLDL------------------LLELADRVIVLEDG 210 (211)
T ss_pred HHHcCCEEEEEeCCHHH------------------HHHhCCEEEEEeCC
Confidence 55568999999997654 45568888887653
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.6e-13 Score=123.52 Aligned_cols=156 Identities=18% Similarity=0.154 Sum_probs=100.0
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcc--eecCCCCHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENL--LLAQPDCGEQAL 125 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~--~~~~~~~~e~~l 125 (366)
-+++|++++|+||||||||||++.+++.+.+..|. ++++++.... ..+.+.+++.+|+. .+....++.+.+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl 105 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS-IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQI 105 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHH
Confidence 37799999999999999999999999988888887 5666654322 23456799999987 345566777765
Q ss_pred HHHHHHHhcC----C--------ceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 126 SLVDTLIRSG----S--------VDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 126 ~~~~~~~~~~----~--------~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
.......... . ...+-++ ...... ...+++ |++|+...||++...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS~--G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 182 (228)
T cd03257 106 AEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRY-PHELSG--GQRQRVAIARALALNPKLLIADEPTSALDVSVQA 182 (228)
T ss_pred HHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCC-chhcCH--HHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHH
Confidence 4321111000 0 0000010 111111 133443 888888888887654
Q ss_pred -HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 174 -LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 174 -L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+..+...+.+ .+.|||+++|..+. +..+||+++.|.++.+
T Consensus 183 ~l~~~l~~~~~~~~~tii~~sH~~~~------------------~~~~~d~i~~l~~G~i 224 (228)
T cd03257 183 QILDLLKKLQEELGLTLLFITHDLGV------------------VAKIADRVAVMYAGKI 224 (228)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHH------------------HHHhcCeEEEEeCCEE
Confidence 5555555444 38999999997654 5567899988887653
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-13 Score=125.00 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=99.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR- 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~- 133 (366)
+++|++++|+||||||||||++.+++...+..|. +++++.... .+.+.+++.+|+..++...++.+.+........
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 103 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE-VLVDGEPVT--GPGPDRGYVFQQDALLPWLTVLDNVALGLELQGV 103 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECc--cccCcEEEEecccccccCCCHHHHHHHHHHHcCC
Confidence 7799999999999999999999999988777776 566654332 234568999998877766787776654321100
Q ss_pred ------c---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh-hh
Q 017792 134 ------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-SL 183 (366)
Q Consensus 134 ------~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l-~~ 183 (366)
. .-...+-++...... ...+++ |++|+...||+++.. +..+...+ ++
T Consensus 104 ~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~ 180 (220)
T cd03293 104 PKAEARERAEELLELVGLSGFENAY-PHQLSG--GMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180 (220)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 0 000011111111111 134444 888888888887664 55555544 34
Q ss_pred cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEE--Eece
Q 017792 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIK--RIGL 231 (366)
Q Consensus 184 ~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~--~~~~ 231 (366)
.+.|||+++|..+. +..+||+++.|. ++.+
T Consensus 181 ~~~tiii~sH~~~~------------------~~~~~d~i~~l~~~~G~i 212 (220)
T cd03293 181 TGKTVLLVTHDIDE------------------AVFLADRVVVLSARPGRI 212 (220)
T ss_pred cCCEEEEEecCHHH------------------HHHhCCEEEEEECCCCEE
Confidence 58999999997764 455788888887 4543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.3e-13 Score=126.56 Aligned_cols=160 Identities=16% Similarity=0.208 Sum_probs=103.3
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-----HHHHhhcccccCcce-ecCCCCHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-----PSLAETIGVKTENLL-LAQPDCGEQALSL 127 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~-~~~~~~~e~~l~~ 127 (366)
-+++|++++|+|+||||||||++.+++.+.+..|. +++++..... ..+...+||.+|++. ...+.++.+.+.+
T Consensus 29 ~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~ 107 (287)
T PRK13637 29 EIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGK-IIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAF 107 (287)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccE-EEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHh
Confidence 37799999999999999999999999998888886 6667654322 245678999999863 1223566665543
Q ss_pred HHHHHh----------cCCceEEEEe--cccccCCCCccCCccchhhHHHHHHHHHHH--------------------HH
Q 017792 128 VDTLIR----------SGSVDVVVVD--SVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LR 175 (366)
Q Consensus 128 ~~~~~~----------~~~~~lvviD--sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~ 175 (366)
...... ..-...+-++ ....-. ...+++ |++|+...||+++.. +.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-~~~LSg--Gq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~ 184 (287)
T PRK13637 108 GPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKS-PFELSG--GQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEIL 184 (287)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHH
Confidence 211000 0000111111 111111 233444 888888888887754 55
Q ss_pred HHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 176 KLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 176 ~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
.+...+.+ .+.|||+++|..+. +..+||+++.|.++.+...+
T Consensus 185 ~~l~~l~~~~g~tvi~vtHd~~~------------------~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 185 NKIKELHKEYNMTIILVSHSMED------------------VAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEC
Confidence 66655544 48999999997754 45679999999887655443
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-13 Score=125.69 Aligned_cols=160 Identities=15% Similarity=0.222 Sum_probs=103.6
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H--HHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P--SLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~--~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
-+.+|++++|+|+||||||||++.+++...+.+|. +++++..... . .+.+.+++.+|+..++...++.+.+....
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 105 (237)
T PRK11614 27 HINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGR-IVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGG 105 (237)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCce-EEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhh
Confidence 36799999999999999999999999988888887 5566654322 1 23556899999887776667776654321
Q ss_pred HHHhcCC--------ceEE-EEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHH
Q 017792 130 TLIRSGS--------VDVV-VVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHS 180 (366)
Q Consensus 130 ~~~~~~~--------~~lv-viDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~ 180 (366)
....... ...+ -++....- +...+++ |++|+...||+++.. +.++...
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~-~~~~LS~--G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 182 (237)
T PRK11614 106 FFAERDQFQERIKWVYELFPRLHERRIQ-RAGTMSG--GEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQ 182 (237)
T ss_pred hccChhHHHHHHHHHHHHHHHHHHHHhC-chhhCCH--HHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 1000000 0000 01111000 1233443 788888888877653 5555555
Q ss_pred hhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 181 l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.+.+.|||+++|..+. +..+||+++.|+++++...+
T Consensus 183 ~~~~~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i~~~~ 219 (237)
T PRK11614 183 LREQGMTIFLVEQNANQ------------------ALKLADRGYVLENGHVVLED 219 (237)
T ss_pred HHHCCCEEEEEeCcHHH------------------HHhhCCEEEEEeCCEEEeeC
Confidence 55669999999997654 55678999999877654443
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-13 Score=125.94 Aligned_cols=158 Identities=23% Similarity=0.264 Sum_probs=103.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
+++|++++|+|+||||||||++.+++...+..|. ++++++.... ..+.+.+++.+|+..+....++.+.+......
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 103 (258)
T PRK13548 25 LRPGEVVAILGPNGAGKSTLLRALSGELSPDSGE-VRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAP 103 (258)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE-EEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcc
Confidence 6799999999999999999999999988887887 5566543221 23456789999987766666777765432110
Q ss_pred Hh----------cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHH------H--------------------HH
Q 017792 132 IR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ------A--------------------LR 175 (366)
Q Consensus 132 ~~----------~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~------~--------------------L~ 175 (366)
.. ..-...+-++...... ...+++ |++|+...+|+++. . +.
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--Ge~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~ 180 (258)
T PRK13548 104 HGLSRAEDDALVAAALAQVDLAHLAGRD-YPQLSG--GEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVL 180 (258)
T ss_pred cCCCcHHHHHHHHHHHHHcCCHhHhcCC-cccCCH--HHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHH
Confidence 00 0000111111111111 234444 88999999999883 2 55
Q ss_pred HHHHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 176 KLSHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 176 ~L~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
.+...+. +.+.|||+++|.... +..+||+++.|.++.++..
T Consensus 181 ~~l~~~~~~~~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 181 RLARQLAHERGLAVIVVLHDLNL------------------AARYADRIVLLHQGRLVAD 222 (258)
T ss_pred HHHHHHHHhcCCEEEEEECCHHH------------------HHHhcCEEEEEECCEEEee
Confidence 5555554 568999999997654 5567899999987765433
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.6e-13 Score=123.14 Aligned_cols=157 Identities=24% Similarity=0.278 Sum_probs=102.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
+++|++++|+||||||||||++.+++...+.+|. +++++..... ..+...+++.+|+..++...++.+.+.....+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 102 (242)
T cd03295 24 IAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGE-IFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKL 102 (242)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHH
Confidence 7799999999999999999999999988887787 5666654322 23456789999998777777887776543221
Q ss_pred HhcC----------CceEEEEec--ccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHH
Q 017792 132 IRSG----------SVDVVVVDS--VAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSH 179 (366)
Q Consensus 132 ~~~~----------~~~lvviDs--l~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~ 179 (366)
.... -...+-+.. ...-. ...+++ |++|+...||++... +.++..
T Consensus 103 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~ 179 (242)
T cd03295 103 LKWPKEKIRERADELLALVGLDPAEFADRY-PHELSG--GQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFK 179 (242)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCcHHHHhcC-hhhCCH--HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence 1000 001111110 11111 123443 788888888887654 445555
Q ss_pred Hhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 180 SLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 180 ~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
.+++ .+++||+++|.... +..+||+++.|.++.++.
T Consensus 180 ~~~~~~g~tvii~sH~~~~------------------~~~~~d~i~~l~~G~i~~ 216 (242)
T cd03295 180 RLQQELGKTIVFVTHDIDE------------------AFRLADRIAIMKNGEIVQ 216 (242)
T ss_pred HHHHHcCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 5444 48999999997654 456789999988765443
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2e-13 Score=126.72 Aligned_cols=150 Identities=16% Similarity=0.133 Sum_probs=100.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV------ 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~------ 128 (366)
+++|++++|+||||||||||++.+++...+..|.+ ++++... ..+.+.+++.+|+..++...++.+.+...
T Consensus 35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i-~~~g~~~--~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~ 111 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGTAPL--AEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWR 111 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEH--HHhhCceEEEecCccCCCCCcHHHHHHhcccchHH
Confidence 67999999999999999999999999988888875 5555322 23456789999988776666777765431
Q ss_pred ---HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh-hhc
Q 017792 129 ---DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-SLS 184 (366)
Q Consensus 129 ---~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l-~~~ 184 (366)
..++.... ++....-. ...+++ |++|+...+|+++.. +..+...+ ++.
T Consensus 112 ~~~~~~l~~~g-----l~~~~~~~-~~~LSg--Gqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~ 183 (257)
T PRK11247 112 DAALQALAAVG-----LADRANEW-PAALSG--GQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQH 183 (257)
T ss_pred HHHHHHHHHcC-----ChhHhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 11111111 11111111 134444 788888888877654 44444444 346
Q ss_pred CcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 185 QTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 185 ~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
++|||+++|.... +..+||+++.|.++.++.
T Consensus 184 ~~tviivsHd~~~------------------~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 184 GFTVLLVTHDVSE------------------AVAMADRVLLIEEGKIGL 214 (257)
T ss_pred CCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEe
Confidence 8999999997764 456789999988765443
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.1e-13 Score=120.84 Aligned_cols=153 Identities=20% Similarity=0.238 Sum_probs=99.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+++| +++|+||||||||||++.+++.+.+..|. ++++++.... ..+.+.+++.+|+..++...++.+.+.......
T Consensus 23 i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 100 (211)
T cd03264 23 LGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGT-IRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK 100 (211)
T ss_pred EcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccE-EEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHh
Confidence 6689 99999999999999999999988888887 5566654322 345677899999887777678877665422110
Q ss_pred hcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 133 RSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 133 ~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
... -...+-++...... ...+++ |++|+...||+++.. +.++...++
T Consensus 101 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 177 (211)
T cd03264 101 GIPSKEVKARVDEVLELVNLGDRAKKK-IGSLSG--GMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELG 177 (211)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHhCc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh
Confidence 000 00111111111111 233444 788888888877654 555555554
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+ +.|||+++|.... +..+||+++.|+++++
T Consensus 178 ~-~~tii~vsH~~~~------------------~~~~~d~i~~l~~g~i 207 (211)
T cd03264 178 E-DRIVILSTHIVED------------------VESLCNQVAVLNKGKL 207 (211)
T ss_pred C-CCEEEEEcCCHHH------------------HHHhCCEEEEEECCEE
Confidence 4 5999999997654 4557888888887653
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-13 Score=124.16 Aligned_cols=158 Identities=16% Similarity=0.202 Sum_probs=100.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHH-H
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTL-I 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~-~ 132 (366)
+.+|++++|+|+||||||||++.+++...+.+|. ++++++.... ......+++.+|+..++...++.+.+...... .
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 100 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPASGS-LTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL 100 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccccccc
Confidence 7799999999999999999999999998888887 5666654322 12245689999887776666776665421100 0
Q ss_pred hcC---------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-
Q 017792 133 RSG---------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS- 182 (366)
Q Consensus 133 ~~~---------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~- 182 (366)
... -...+-++...... ...+++ |++|+...+|+++.. +.++...+.
T Consensus 101 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~ 177 (232)
T PRK10771 101 KLNAAQREKLHAIARQMGIEDLLARL-PGQLSG--GQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQ 177 (232)
T ss_pred CCCHHHHHHHHHHHHHcCcHHHHhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 000 00111111111111 133444 778888888776654 445444443
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++|||+++|.... +..+||+++.|.++.+...
T Consensus 178 ~~~~tiii~sH~~~~------------------~~~~~d~i~~l~~g~i~~~ 211 (232)
T PRK10771 178 ERQLTLLMVSHSLED------------------AARIAPRSLVVADGRIAWD 211 (232)
T ss_pred hcCCEEEEEECCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 358999999997764 5567888888887655433
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-13 Score=127.13 Aligned_cols=158 Identities=16% Similarity=0.145 Sum_probs=102.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcce-ecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLL-LAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~~~ 130 (366)
+++|++++|+|+||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|++. .+...++.+.+.+...
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~ 108 (279)
T PRK13650 30 VKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ-IIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLE 108 (279)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHH
Confidence 7799999999999999999999999998888886 6677654322 245678999999863 4445577666543211
Q ss_pred HHh-------c---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHH
Q 017792 131 LIR-------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHS 180 (366)
Q Consensus 131 ~~~-------~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~ 180 (366)
... . .-.+.+-++...... ...+++ |++|+...||+++.. +..+...
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LSg--Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 185 (279)
T PRK13650 109 NKGIPHEEMKERVNEALELVGMQDFKERE-PARLSG--GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKG 185 (279)
T ss_pred hCCCCHHHHHHHHHHHHHHCCCHhHhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 100 0 000111112111111 134444 788888888887654 5555555
Q ss_pred hhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 181 LSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 181 l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.+ .|+|||+++|..+. +. +||+++.|.++.+...+
T Consensus 186 l~~~~g~tilivtH~~~~------------------~~-~~dri~~l~~G~i~~~g 222 (279)
T PRK13650 186 IRDDYQMTVISITHDLDE------------------VA-LSDRVLVMKNGQVESTS 222 (279)
T ss_pred HHHhcCCEEEEEecCHHH------------------HH-hCCEEEEEECCEEEEEC
Confidence 544 59999999997654 43 58999999877654443
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-13 Score=126.49 Aligned_cols=158 Identities=20% Similarity=0.252 Sum_probs=101.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---CHHHHhhcccccCcceecCCCCHHHHHHHHHH-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVDT- 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~- 130 (366)
+.+|++++|+|+||||||||++.+++.+.+..|. ++++++... ...+.+.+++.+|+..++...++.+.+.....
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 112 (265)
T PRK10575 34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGE-ILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYP 112 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCE-EEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCccc
Confidence 6799999999999999999999999988877787 566665321 13445678999988666666677666543110
Q ss_pred HH----------h---cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 131 LI----------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 131 ~~----------~---~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
.. . ..-...+-++...... ...+++ |++|+...||+++.. +..+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~ 189 (265)
T PRK10575 113 WHGALGRFGAADREKVEEAISLVGLKPLAHRL-VDSLSG--GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLAL 189 (265)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 00 0 0000111111111111 123444 788888888877654 5555
Q ss_pred HHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 178 SHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 178 ~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
...+.+ .++|||+++|.... +..+||+++.|.++.+...
T Consensus 190 l~~l~~~~~~tiii~sH~~~~------------------i~~~~d~i~~l~~G~i~~~ 229 (265)
T PRK10575 190 VHRLSQERGLTVIAVLHDINM------------------AARYCDYLVALRGGEMIAQ 229 (265)
T ss_pred HHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCeEEEe
Confidence 555544 48999999997654 5567898888887765433
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.8e-13 Score=121.37 Aligned_cols=155 Identities=14% Similarity=0.144 Sum_probs=100.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---H---HHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---P---SLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~---~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... . .+.+.+++.+|+..++...++.+.+...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 103 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGK-IWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIP 103 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhH
Confidence 6799999999999999999999999988877786 5666543221 1 2456789999988766666776665432
Q ss_pred HHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 DTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
....... -...+-+.....-. ...+++ |++|+...+|++... +..+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 180 (222)
T PRK10908 104 LIIAGASGDDIRRRVSAALDKVGLLDKAKNF-PIQLSG--GEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLF 180 (222)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-chhCCH--HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 1110000 00011111111111 133444 788888888887654 55555
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
..+++.+.|||+++|..+. +..+||+++.|.++.+
T Consensus 181 ~~~~~~~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i 215 (222)
T PRK10908 181 EEFNRVGVTVLMATHDIGL------------------ISRRSYRMLTLSDGHL 215 (222)
T ss_pred HHHHHCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEE
Confidence 5555568999999997664 5567888888887643
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.3e-13 Score=123.31 Aligned_cols=157 Identities=16% Similarity=0.160 Sum_probs=101.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H--HHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P--SLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~--~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+.+|++++|.|+||||||||++.+++...+..|. +++++..... . .....+++.+|+..++...++.+.+.....
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~ 103 (242)
T TIGR03411 25 VDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGS-VLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALP 103 (242)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCe-EEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhh
Confidence 6799999999999999999999999988888887 5666653321 1 223468999998877777788776654211
Q ss_pred HHh---------------c---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 131 LIR---------------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 131 ~~~---------------~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
... . .-...+-++...... ...+++ |++|+...+|++...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~ 180 (242)
T TIGR03411 104 RDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-AGLLSH--GQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETE 180 (242)
T ss_pred cccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHH
Confidence 000 0 000001111111111 123433 788888888877654
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+ +.|||+++|..+. +..+||+++.|.++.+...
T Consensus 181 ~l~~~l~~~~~-~~tii~~sH~~~~------------------~~~~~d~i~~l~~g~~~~~ 223 (242)
T TIGR03411 181 KTAELLKSLAG-KHSVVVVEHDMEF------------------VRSIADKVTVLHQGSVLAE 223 (242)
T ss_pred HHHHHHHHHhc-CCEEEEEECCHHH------------------HHHhCCEEEEEECCeEEee
Confidence 5555555544 6899999997654 5567899999987765433
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.7e-14 Score=128.01 Aligned_cols=170 Identities=21% Similarity=0.285 Sum_probs=114.7
Q ss_pred ChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeE-----EEEeCCCC-CCHHHHhhcccccCccee
Q 017792 42 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYC-----VFIDAEHA-LDPSLAETIGVKTENLLL 115 (366)
Q Consensus 42 G~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~v-----l~id~e~~-~~~~~~~~ig~~~~~~~~ 115 (366)
|...||.-+. +|...+++|+|++|||||||.+.+++...++.|.+ +++|.+.. +-+...+++||+||+-.+
T Consensus 11 G~~~l~a~~~---~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARL 87 (352)
T COG4148 11 GNFALDANFT---LPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL 87 (352)
T ss_pred CceEEEEecc---CCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeecccc
Confidence 4445555554 55547999999999999999999999998876542 23333322 225667899999999999
Q ss_pred cCCCCHHHHHHHHHHHHhcCC----ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH------------------
Q 017792 116 AQPDCGEQALSLVDTLIRSGS----VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------------ 173 (366)
Q Consensus 116 ~~~~~~e~~l~~~~~~~~~~~----~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------------ 173 (366)
++..++..++.+-........ +.++-|..+..-+| ..++| |++|+..+.|++...
T Consensus 88 FpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-~~LSG--GEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 88 FPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-GTLSG--GEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred ccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCC-CccCc--chhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 888887776655433221111 22333444444443 44555 889998888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
|--|-+...+.+++|++++|-..+ +..+||.++.|..+++...|
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~E------------------v~RLAd~vV~le~GkV~A~g 211 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDE------------------VLRLADRVVVLENGKVKASG 211 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHH------------------HHhhhheEEEecCCeEEecC
Confidence 222222225679999999997766 77889999999888765544
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-13 Score=130.36 Aligned_cols=159 Identities=19% Similarity=0.135 Sum_probs=105.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H----HHHhhcccccCcc--eecCCCCHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P----SLAETIGVKTENL--LLAQPDCGEQALS 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~----~~~~~ig~~~~~~--~~~~~~~~e~~l~ 126 (366)
|.+|++++|+|+||||||||++.+++.+.+..|. ++++++.... . .+.+.+++++|+. .+.+..++.+.+.
T Consensus 44 i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~-I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~ 122 (331)
T PRK15079 44 LYEGETLGVVGESGCGKSTFARAIIGLVKATDGE-VAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIA 122 (331)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcE-EEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHH
Confidence 6799999999999999999999999998887787 5667665432 1 2346799999987 3555567766654
Q ss_pred HHHHHH----hcC--------CceEEEE-ecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 127 LVDTLI----RSG--------SVDVVVV-DSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 127 ~~~~~~----~~~--------~~~lvvi-Dsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
...... ... -...+-+ +.+.... ..++++ |++|+...||+++..
T Consensus 123 ~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~-p~~LSg--G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~ 199 (331)
T PRK15079 123 EPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRY-PHEFSG--GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQ 199 (331)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence 321110 000 0111111 1121222 245555 889999999888764
Q ss_pred HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.++...+++ .+.|||+++|.... +..+||+++.|..+.++..+
T Consensus 200 i~~lL~~l~~~~~~til~iTHdl~~------------------~~~~~dri~vl~~G~ive~g 244 (331)
T PRK15079 200 VVNLLQQLQREMGLSLIFIAHDLAV------------------VKHISDRVLVMYLGHAVELG 244 (331)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEc
Confidence 5555555544 59999999997764 55678999999887766554
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-13 Score=124.57 Aligned_cols=158 Identities=17% Similarity=0.178 Sum_probs=101.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHHHH-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVDT- 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~- 130 (366)
+.+|++++|+|+||||||||++.+++.+.+..|. +++++..... ..+.+.++|.+|++.+....++.+.+.....
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 102 (256)
T TIGR03873 24 APPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGT-VDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIP 102 (256)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCE-EEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchh
Confidence 6799999999999999999999999988887887 5666653322 2445578999998765566677776543210
Q ss_pred ---HHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 131 ---LIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 131 ---~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
..... -...+-+..+.... ...+++ |++++...+|+++.. +..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 179 (256)
T TIGR03873 103 HRSLWAGDSPHDAAVVDRALARTELSHLADRD-MSTLSG--GERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLAL 179 (256)
T ss_pred hhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHH
Confidence 00000 00001011111111 123443 788888888877653 5566
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
...+++.+.|||+++|.... +..+||+++.|+++.++..
T Consensus 180 l~~~~~~~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 218 (256)
T TIGR03873 180 VRELAATGVTVVAALHDLNL------------------AASYCDHVVVLDGGRVVAA 218 (256)
T ss_pred HHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEeCCCEEEe
Confidence 65655568999999997764 5567899999987765443
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-13 Score=123.73 Aligned_cols=156 Identities=19% Similarity=0.168 Sum_probs=99.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
+.+|++++|+|+||||||||++.+++.+.+..|. +++++...... ..+.+++.+++..++...++.+.+.........
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~~~~~~~~-~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~ 100 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGE-IIFDGHPWTRK-DLHKIGSLIESPPLYENLTARENLKVHTTLLGL 100 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEecccc-ccccEEEEcCCCCccccCCHHHHHHHHHHHcCC
Confidence 6799999999999999999999999988888787 55665432221 124688888887776667777766443221100
Q ss_pred CC------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhhcCcEE
Q 017792 135 GS------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSLSQTIL 188 (366)
Q Consensus 135 ~~------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~~~~tV 188 (366)
.. .+.+-++...... ...+++ |++++...+|+++.. +.++...+++.+.+|
T Consensus 101 ~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~ti 177 (223)
T TIGR03740 101 PDSRIDEVLNIVDLTNTGKKK-AKQFSL--GMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITV 177 (223)
T ss_pred CHHHHHHHHHHcCCcHHHhhh-HhhCCH--HHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 00 0111111111111 123333 777777777776653 555555555568999
Q ss_pred EEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 189 IFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 189 I~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
|+++|.... +..+||+++.|.++.+..
T Consensus 178 ii~sH~~~~------------------~~~~~d~i~~l~~g~i~~ 204 (223)
T TIGR03740 178 ILSSHILSE------------------VQQLADHIGIISEGVLGY 204 (223)
T ss_pred EEEcCCHHH------------------HHHhcCEEEEEeCCEEEE
Confidence 999997654 556789988888765443
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.8e-13 Score=127.28 Aligned_cols=155 Identities=19% Similarity=0.205 Sum_probs=103.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcce--ecCCCCHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLL--LAQPDCGEQALS 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~--~~~~~~~e~~l~ 126 (366)
|++|++++|+|+||||||||++.+++...+..|. ++++++.... ..+.+++++.+|+.. +.+..++.+.+.
T Consensus 38 i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~-i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~ 116 (327)
T PRK11308 38 LERGKTLAVVGESGCGKSTLARLLTMIETPTGGE-LYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILE 116 (327)
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcE-EEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHH
Confidence 6799999999999999999999999988877776 5566654322 124557999999863 444456655443
Q ss_pred H----------------HHHHHhcCCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 127 L----------------VDTLIRSGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 127 ~----------------~~~~~~~~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
. +..++.. +-++ ...... ..++++ |++|+...||+++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~-----~gL~~~~~~~~-p~~LSg--Gq~QRv~iArAL~~~P~lLilDEPts~LD~~ 188 (327)
T PRK11308 117 EPLLINTSLSAAERREKALAMMAK-----VGLRPEHYDRY-PHMFSG--GQRQRIAIARALMLDPDVVVADEPVSALDVS 188 (327)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHH-----CCCChHHhcCC-CccCCH--HHHHHHHHHHHHHcCCCEEEEECCCccCCHH
Confidence 2 1111111 1111 111222 245655 889999999988764
Q ss_pred ----HHHHHHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 ----LRKLSHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 ----L~~L~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++...++ +.|+|||+|+|.... +..+||+++.|..++++..+.
T Consensus 189 ~~~~i~~lL~~l~~~~g~til~iTHdl~~------------------~~~~adrv~vm~~G~ive~g~ 238 (327)
T PRK11308 189 VQAQVLNLMMDLQQELGLSYVFISHDLSV------------------VEHIADEVMVMYLGRCVEKGT 238 (327)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEECC
Confidence 444444444 469999999997654 556789999998887766543
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.5e-13 Score=123.93 Aligned_cols=159 Identities=18% Similarity=0.229 Sum_probs=102.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H--HHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P--SLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~--~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+++|++++|+|+||||||||++.+++.+.+..|. ++++++.... . .+.+.+++.+|+..++...++.+.+.....
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 101 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGS-IRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLA 101 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE-EEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHH
Confidence 7799999999999999999999999998888887 5566544321 1 234568999998877776788777654322
Q ss_pred HHhcCCceE--EEEec---ccccC--CCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhh
Q 017792 131 LIRSGSVDV--VVVDS---VAALV--PKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSL 183 (366)
Q Consensus 131 ~~~~~~~~l--vviDs---l~~l~--~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~ 183 (366)
......... -+++. +.... +...+++ |++|+...+|+++.. +.++...+++
T Consensus 102 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~--G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~ 179 (230)
T TIGR03410 102 ALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSG--GQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA 179 (230)
T ss_pred hcCcchHHHHHHHHHHHHhHHHHhhCChhhCCH--HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 110000000 00000 11111 1123433 778888888877653 5555555554
Q ss_pred -cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 184 -SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 184 -~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
.++|||+++|..+. +..+||.++.+.++.++..
T Consensus 180 ~~~~tii~~sH~~~~------------------~~~~~d~v~~l~~g~i~~~ 213 (230)
T TIGR03410 180 EGGMAILLVEQYLDF------------------ARELADRYYVMERGRVVAS 213 (230)
T ss_pred cCCcEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEE
Confidence 48999999997764 5567899999987765443
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.5e-14 Score=122.44 Aligned_cols=162 Identities=16% Similarity=0.197 Sum_probs=118.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HH--H-HhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PS--L-AETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~--~-~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+.+|++++|.||||+||||...++++.+.++.|. ++++..+... +. + ..-+||.+|...++...|+++++..+.+
T Consensus 27 v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~-i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE 105 (243)
T COG1137 27 VNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGK-ILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLE 105 (243)
T ss_pred EcCCcEEEEECCCCCCceeEEEEEEEEEecCCce-EEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHh
Confidence 7799999999999999999999999999999887 6677665543 22 2 2347899999999999999998776554
Q ss_pred HHhcCC---ceEEEEeccc------ccC--CCCccCCccchhhHHHHHHHHHHH--------------------HHHHHH
Q 017792 131 LIRSGS---VDVVVVDSVA------ALV--PKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSH 179 (366)
Q Consensus 131 ~~~~~~---~~lvviDsl~------~l~--~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~ 179 (366)
...... .+-.-+|.+. .+. +...+++ |++.+..+||+++.. ++++.+
T Consensus 106 ~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSG--GERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~ 183 (243)
T COG1137 106 IREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSG--GERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIK 183 (243)
T ss_pred hhhcchhHHHHHHHHHHHHHHhchHHHhcCccccccc--chHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHH
Confidence 332110 0000112221 111 1234444 899999999998764 899999
Q ss_pred HhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCcc
Q 017792 180 SLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEE 237 (366)
Q Consensus 180 ~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~ 237 (366)
.|+..|+-|+++.|..++ .-.+||+...+..++++.+|++
T Consensus 184 ~L~~rgiGvLITDHNVRE------------------tL~i~dRaYIi~~G~vla~G~p 223 (243)
T COG1137 184 HLKDRGIGVLITDHNVRE------------------TLDICDRAYIISDGKVLAEGSP 223 (243)
T ss_pred HHHhCCceEEEccccHHH------------------HHhhhheEEEEecCeEEecCCH
Confidence 999999999999997665 2346888888988888888764
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.7e-13 Score=125.52 Aligned_cols=159 Identities=21% Similarity=0.270 Sum_probs=102.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---CHHHHhhcccccCcceecCCCCHHHHHHHHH-H
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVD-T 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-~ 130 (366)
+.+|++++|+|+||||||||++.+++.+.+..|. ++++++... ...+...++|.+|+..++...++.+.+.... .
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~ 108 (265)
T PRK10253 30 IPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGH-VWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYP 108 (265)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcE-EEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCccc
Confidence 6799999999999999999999999988887786 556665322 1344567899999887766667766654310 0
Q ss_pred H---H-------h---cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 131 L---I-------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 131 ~---~-------~---~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
. . . ..-...+-++....-. ...+++ |++|+...||+++.. +.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~ 185 (265)
T PRK10253 109 HQPLFTRWRKEDEEAVTKAMQATGITHLADQS-VDTLSG--GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLEL 185 (265)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-cccCCh--HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH
Confidence 0 0 0 0000011111111111 133444 788888888887654 4455
Q ss_pred HHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 178 SHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 178 ~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
...+.+ .++|||+++|.... +..+||+++.|.++.++..+
T Consensus 186 L~~l~~~~~~tiii~tH~~~~------------------~~~~~d~i~~l~~G~i~~~g 226 (265)
T PRK10253 186 LSELNREKGYTLAAVLHDLNQ------------------ACRYASHLIALREGKIVAQG 226 (265)
T ss_pred HHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEeC
Confidence 555544 48999999997764 55678999999877655443
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.9e-13 Score=127.85 Aligned_cols=159 Identities=19% Similarity=0.229 Sum_probs=102.8
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC----C---HHHHhhcccccCcc--eecCCCCHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----D---PSLAETIGVKTENL--LLAQPDCGEQA 124 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~----~---~~~~~~ig~~~~~~--~~~~~~~~e~~ 124 (366)
=|++|++++|+|+||||||||++.+++...+..|. +++++.... . ..+.+.+||.+|++ .++ +.++.+.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~en 106 (290)
T PRK13634 29 SIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGT-VTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKD 106 (290)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcE-EEECCEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHH
Confidence 37799999999999999999999999998888886 566665432 1 24556799999975 333 3466666
Q ss_pred HHHHHHHHh----------cCCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 125 LSLVDTLIR----------SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 125 l~~~~~~~~----------~~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
+.+...... ..-.+.+-++ .+.... ...+++ |++|+...||+++..
T Consensus 107 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~~LSg--Gq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~ 183 (290)
T PRK13634 107 ICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARS-PFELSG--GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKE 183 (290)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 543211000 0000111111 111111 234444 888888888887764
Q ss_pred HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+..+...+.+ .|.|||+++|..+. +..+||+++.|.+++++..+
T Consensus 184 l~~~L~~l~~~~g~tviiitHd~~~------------------~~~~~drv~~l~~G~i~~~g 228 (290)
T PRK13634 184 MMEMFYKLHKEKGLTTVLVTHSMED------------------AARYADQIVVMHKGTVFLQG 228 (290)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEC
Confidence 5555555543 59999999997764 55678999999887655444
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.9e-13 Score=125.45 Aligned_cols=157 Identities=18% Similarity=0.254 Sum_probs=101.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHHH-H
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLVD-T 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-~ 130 (366)
+.+|++++|+|+||||||||++.+++.+.+..|. +++++.... . ..+.+.+++.+|+..+....++.+.+.... .
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~ 103 (255)
T PRK11231 25 LPTGKITALIGPNGCGKSTLLKCFARLLTPQSGT-VFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSP 103 (255)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcE-EEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccch
Confidence 6799999999999999999999999988887787 556654321 1 234556899999877666667766654321 0
Q ss_pred ---HHhc----------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 131 ---LIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 131 ---~~~~----------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
.... .-...+-++...... ...+++ |++|+...||+++.. +..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ 180 (255)
T PRK11231 104 WLSLWGRLSAEDNARVNQAMEQTRINHLADRR-LTDLSG--GQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRL 180 (255)
T ss_pred hhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 0000 000111111111111 234444 888888888887664 5555
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
...+.+.++|||+++|.... +..+||+++.|.++.+..
T Consensus 181 l~~l~~~~~tiii~tH~~~~------------------~~~~~d~i~~l~~G~i~~ 218 (255)
T PRK11231 181 MRELNTQGKTVVTVLHDLNQ------------------ASRYCDHLVVLANGHVMA 218 (255)
T ss_pred HHHHHHCCCEEEEEECCHHH------------------HHHhcCEEEEEECCeEEE
Confidence 55555568999999997654 556788888888765443
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.42 E-value=3e-13 Score=122.04 Aligned_cols=154 Identities=19% Similarity=0.261 Sum_probs=99.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-------HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-------~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++ ++++|+|+||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+..++...++.+.+..
T Consensus 21 i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~ 98 (214)
T cd03297 21 LNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGT-IVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAF 98 (214)
T ss_pred Ecc-eeEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHH
Confidence 668 999999999999999999999998888887 4566544321 1345678999998877777777776543
Q ss_pred HHHHH-----hc---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHH
Q 017792 128 VDTLI-----RS---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSH 179 (366)
Q Consensus 128 ~~~~~-----~~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~ 179 (366)
..... .. .-...+-++...... ...+++ |++|+...+|+++.. +.++..
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 175 (214)
T cd03297 99 GLKRKRNREDRISVDELLDLLGLDHLLNRY-PAQLSG--GEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELK 175 (214)
T ss_pred HHhhCCHHHHHHHHHHHHHHcCCHhHhhcC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 21100 00 000111111111111 234444 788888888877654 555555
Q ss_pred Hhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 180 SLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 180 ~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
.+.+ .++|||+++|.... +..+||+++.|.++++
T Consensus 176 ~~~~~~~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i 210 (214)
T cd03297 176 QIKKNLNIPVIFVTHDLSE------------------AEYLADRIVVMEDGRL 210 (214)
T ss_pred HHHHHcCcEEEEEecCHHH------------------HHHhcCEEEEEECCEE
Confidence 5444 48999999997764 4557888888887654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.9e-13 Score=125.01 Aligned_cols=156 Identities=18% Similarity=0.170 Sum_probs=102.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H-H----HHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-S----LAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~-~----~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++.+.+..|. ++++++.... . . +.+.+++.+|+..++...++.+.+..
T Consensus 47 i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~-i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 125 (269)
T cd03294 47 VREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGK-VLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAF 125 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE-EEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHH
Confidence 6799999999999999999999999998887776 5676654322 1 1 23568999998877777788777654
Q ss_pred HHHHHh-------c---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIR-------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~-------~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
...... . .-...+-++...... ...+++ |++|+...||+++.. +.++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~ 202 (269)
T cd03294 126 GLEVQGVPRAEREERAAEALELVGLEGWEHKY-PDELSG--GMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDE 202 (269)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 321100 0 000011111111111 134444 888888888887654 5555
Q ss_pred HHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 178 SHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 178 ~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
...+. +.+.|||+++|..+. +..+||.++.|.++.+.
T Consensus 203 l~~~~~~~g~tiii~tH~~~~------------------~~~~~d~v~~l~~G~i~ 240 (269)
T cd03294 203 LLRLQAELQKTIVFITHDLDE------------------ALRLGDRIAIMKDGRLV 240 (269)
T ss_pred HHHHHHhcCCEEEEEeCCHHH------------------HHHhcCEEEEEECCEEE
Confidence 55544 348999999997654 55678999988876543
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.8e-13 Score=122.46 Aligned_cols=158 Identities=16% Similarity=0.179 Sum_probs=103.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC-----C----HHHHhhcccccCcceecCCCCHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-----D----PSLAETIGVKTENLLLAQPDCGEQAL 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~-----~----~~~~~~ig~~~~~~~~~~~~~~e~~l 125 (366)
+.+|++++|.||||||||||++.+++...+..|. ++++++... . ..+.+.+++.+|+..++...++.+.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i 103 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT-LNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNL 103 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHH
Confidence 6799999999999999999999999988877787 566665421 1 23456789999988877777777765
Q ss_pred HHHH-HHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------H
Q 017792 126 SLVD-TLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------L 174 (366)
Q Consensus 126 ~~~~-~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L 174 (366)
.... ...... -...+-++....-. ...+++ |++|+...+|+++.. +
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l 180 (242)
T PRK11124 104 IEAPCRVLGLSKDQALARAEKLLERLRLKPYADRF-PLHLSG--GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQI 180 (242)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHH
Confidence 4211 100000 00011111111111 133443 788888888887654 5
Q ss_pred HHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
..+...+++.+.|||+++|.... +..+||+++.|.++.+...
T Consensus 181 ~~~l~~~~~~~~tii~~sh~~~~------------------~~~~~d~i~~l~~g~i~~~ 222 (242)
T PRK11124 181 VSIIRELAETGITQVIVTHEVEV------------------ARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHH------------------HHHhcCEEEEEECCEEEEe
Confidence 55566555678999999997654 4556888888887665443
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.9e-13 Score=122.76 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=99.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHH-HHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT-LIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~-~~~ 133 (366)
+++|++++|+|+||||||||++.+++...+..|. ++++++...... ...++.+|+..++...++.+.+..... ...
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~ 84 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGG-VILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIALAVDRVLP 84 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEECCCCC--hhheEEecCcccCCCCCHHHHHHHHHHhccc
Confidence 6799999999999999999999999998888887 556654332211 124788888777766787777654211 000
Q ss_pred cCC-----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 134 SGS-----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 134 ~~~-----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
... ...+-++...... ...+++ |++|+...+|+++.. +.++...+.
T Consensus 85 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 161 (230)
T TIGR01184 85 DLSKSERRAIVEEHIALVGLTEAADKR-PGQLSG--GMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIW 161 (230)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence 000 0111111111111 233444 788888888877653 445444443
Q ss_pred h-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 183 L-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 183 ~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+ .++|||+++|.... +..+||+++.|+++.++..
T Consensus 162 ~~~~~tii~~sH~~~~------------------~~~~~d~v~~l~~G~i~~~ 196 (230)
T TIGR01184 162 EEHRVTVLMVTHDVDE------------------ALLLSDRVVMLTNGPAANI 196 (230)
T ss_pred HhcCCEEEEEeCCHHH------------------HHHhcCEEEEEeCCcEecc
Confidence 3 58999999997654 5667899999987765443
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.8e-13 Score=122.95 Aligned_cols=160 Identities=16% Similarity=0.198 Sum_probs=101.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH--hhcCCeEEEEeCCCCCC--H-HH-HhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFIDAEHALD--P-SL-AETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~--~~~gg~vl~id~e~~~~--~-~~-~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++.. .+..|. +++++..... . .+ ...+++.+|+..++...++.+++...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~ 101 (243)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGT-ILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSA 101 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcce-EEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHH
Confidence 6799999999999999999999999984 456676 6677654322 2 22 23478889988777777787776543
Q ss_pred HHHHhcC------C-----------ceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 129 DTLIRSG------S-----------VDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 129 ~~~~~~~------~-----------~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
....... . ...+-++ .+....+...+++ |++|+...||+++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~--G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 179 (243)
T TIGR01978 102 LNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSG--GEKKRNEILQMALLEPKLAILDEIDSGLDIDA 179 (243)
T ss_pred HHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCH--HHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence 2211100 0 0000011 1111111112444 888888888887653
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeee-ceEEEEEEEeceeecC
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFY-ASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~-ad~~i~l~~~~~~~~~ 235 (366)
+.++...+++.+.|||+++|..+. +..+ ||+++.|+++.+...+
T Consensus 180 ~~~l~~~l~~~~~~~~tvi~vsH~~~~------------------~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 180 LKIVAEGINRLREPDRSFLIITHYQRL------------------LNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHHHCCcEEEEEEecHHH------------------HHhhcCCeEEEEeCCEEEEec
Confidence 556666655668999999997654 4455 7888888877654443
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.9e-13 Score=128.56 Aligned_cols=158 Identities=16% Similarity=0.152 Sum_probs=102.6
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC------------------C-HHHHhhcccccCcc-
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL------------------D-PSLAETIGVKTENL- 113 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~------------------~-~~~~~~ig~~~~~~- 113 (366)
-|++|++++|+|+||||||||++.+++.+.+..|. +++++.... . ..+.+.+++.+|+.
T Consensus 48 ~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~-I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~ 126 (320)
T PRK13631 48 TFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGT-IQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPE 126 (320)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCe-EEECCEEcccccccccccccccccccchHHHHHhcEEEEEECch
Confidence 37899999999999999999999999998888887 566653221 1 24567799999976
Q ss_pred -eecCCCCHHHHHHHHHHH-----------HhcCCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH-------
Q 017792 114 -LLAQPDCGEQALSLVDTL-----------IRSGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA------- 173 (366)
Q Consensus 114 -~~~~~~~~e~~l~~~~~~-----------~~~~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------- 173 (366)
.++. .++.+.+.+.... +.. -...+-++ ....-. ...+++ |++|+...||+++..
T Consensus 127 ~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~-~l~~~gL~~~~~~~~-~~~LSg--GqkqRvaiAraL~~~p~iLLLD 201 (320)
T PRK13631 127 YQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKF-YLNKMGLDDSYLERS-PFGLSG--GQKRRVAIAGILAIQPEILIFD 201 (320)
T ss_pred hcccc-chHHHHHHhhHHhcCCCHHHHHHHHHH-HHHHcCCChhHhcCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEE
Confidence 3433 3666554321110 000 00111111 111111 134444 889999999988764
Q ss_pred -------------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 -------------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 -------------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+..+...+++.+.|||+++|..+. +..+||+++.|.++.++..+
T Consensus 202 EPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~------------------~~~~adri~vl~~G~i~~~g 258 (320)
T PRK13631 202 EPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEH------------------VLEVADEVIVMDKGKILKTG 258 (320)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEEeC
Confidence 555555555569999999997654 45678999999988765554
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-12 Score=121.30 Aligned_cols=158 Identities=16% Similarity=0.195 Sum_probs=101.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALS 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~ 126 (366)
+++|++++|+|+||||||||++.+++...+ ..|. +++++..... ..+.+.+++.+|+..++...++.+.+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~-i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~ 104 (250)
T PRK14247 26 IPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGE-VYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVA 104 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceE-EEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHH
Confidence 679999999999999999999999998764 3565 5666654321 345567999999887666677777765
Q ss_pred HHHHHHhc--C----------CceEEEEec-ccccC--CCCccCCccchhhHHHHHHHHHHH------------------
Q 017792 127 LVDTLIRS--G----------SVDVVVVDS-VAALV--PKGELDGEMGDAHMAMQARLMSQA------------------ 173 (366)
Q Consensus 127 ~~~~~~~~--~----------~~~lvviDs-l~~l~--~~~~l~~~~g~~~~~~~ar~l~~~------------------ 173 (366)
........ . -...+-++. +.... +..++++ |++|+...||+++..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg--G~~qrv~laral~~~p~lllLDEP~~~LD~~~~ 182 (250)
T PRK14247 105 LGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSG--GQQQRLCIARALAFQPEVLLADEPTANLDPENT 182 (250)
T ss_pred HHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 43211000 0 000000110 00011 1234444 888888888887754
Q ss_pred --HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 --LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 --L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+.+ +.|||+++|.... +..+||+++.|.++.+...
T Consensus 183 ~~l~~~l~~~~~-~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14247 183 AKIESLFLELKK-DMTIVLVTHFPQQ------------------AARISDYVAFLYKGQIVEW 226 (250)
T ss_pred HHHHHHHHHHhc-CCEEEEEeCCHHH------------------HHHhcCEEEEEECCeEEEE
Confidence 5555555544 7999999997654 5567899999987765443
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.3e-13 Score=121.90 Aligned_cols=158 Identities=15% Similarity=0.132 Sum_probs=101.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-----gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+.+|++++|+|+||||||||++.+++.+.+. .|. ++++++... . ..+.+.+++.+|+..++...++.+.
T Consensus 27 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~en 105 (253)
T PRK14267 27 IPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGE-VRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDN 105 (253)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceE-EEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHH
Confidence 7799999999999999999999999988753 565 667765432 1 2345679999998877777777776
Q ss_pred HHHHHHHHhc---C---------CceEEEEec-ccccC--CCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 125 LSLVDTLIRS---G---------SVDVVVVDS-VAALV--PKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 125 l~~~~~~~~~---~---------~~~lvviDs-l~~l~--~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
+......... . -...+-++. +.... +...+++ |++|+...+|++...
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~--G~~qrv~laral~~~p~llllDEP~~~LD~~ 183 (253)
T PRK14267 106 VAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSG--GQRQRLVIARALAMKPKILLMDEPTANIDPV 183 (253)
T ss_pred HHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 6542211000 0 000000100 00001 1123443 788888888877654
Q ss_pred ----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+.+ ++|||+++|.... +..+||+++.|.++.+...
T Consensus 184 ~~~~l~~~l~~~~~-~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 229 (253)
T PRK14267 184 GTAKIEELLFELKK-EYTIVLVTHSPAQ------------------AARVSDYVAFLYLGKLIEV 229 (253)
T ss_pred HHHHHHHHHHHHhh-CCEEEEEECCHHH------------------HHhhCCEEEEEECCEEEEe
Confidence 5555555444 6899999997654 5567899999987765443
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.2e-13 Score=123.03 Aligned_cols=158 Identities=16% Similarity=0.237 Sum_probs=101.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----------------HHHHhhcccccCcceecCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----------------PSLAETIGVKTENLLLAQP 118 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----------------~~~~~~ig~~~~~~~~~~~ 118 (366)
+++|++++|+|+||||||||++.+++...+.+|. ++++++.... ..+.+.+++.+|+..++..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 101 (252)
T TIGR03005 23 VAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQ-IQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPH 101 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCC
Confidence 6799999999999999999999999988887787 5566543321 1345678999998877776
Q ss_pred CCHHHHHHHHHHHHhcC-----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------
Q 017792 119 DCGEQALSLVDTLIRSG-----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------- 173 (366)
Q Consensus 119 ~~~e~~l~~~~~~~~~~-----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------- 173 (366)
.++.+.+.......... -...+-++....-. ...+++ |++|+...+|+++..
T Consensus 102 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEP~~~LD 178 (252)
T TIGR03005 102 KTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM-PAQLSG--GQQQRVAIARALAMRPKVMLFDEVTSALD 178 (252)
T ss_pred CcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcC-hhhcCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 77776665421100000 00111111111111 123443 788888888887653
Q ss_pred ------HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ------LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ------L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+ .++|||+++|.... +..+||+++.|.++.++..
T Consensus 179 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~------------------~~~~~d~i~~l~~G~i~~~ 228 (252)
T TIGR03005 179 PELVGEVLNVIRRLASEHDLTMLLVTHEMGF------------------AREFADRVCFFDKGRIVEQ 228 (252)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH------------------HHHhcCEEEEEECCEEEEe
Confidence 4444444444 58999999997654 4567899999987765433
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.1e-13 Score=131.15 Aligned_cols=161 Identities=19% Similarity=0.207 Sum_probs=107.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCcceec--CCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLA--QPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~~~~--~~~~~e~~l~~~ 128 (366)
+.+|++++|+|++|||||||++.+++...+.+|.+.|.+.+-... ....+++-+.+|+++.. +..|+.+++..-
T Consensus 314 l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~ep 393 (539)
T COG1123 314 LREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEP 393 (539)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhH
Confidence 679999999999999999999999999999888766655441111 23455677788877543 445666554432
Q ss_pred HHHHhcC-----------CceEEEEec-ccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 129 DTLIRSG-----------SVDVVVVDS-VAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 129 ~~~~~~~-----------~~~lvviDs-l~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
....... -.+++-+.. +..-+ ..++++ |++|+..+||+++.. +.+
T Consensus 394 L~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ry-P~elSG--GQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~Vln 470 (539)
T COG1123 394 LRIHGGGSGAERRARVAELLELVGLPPEFLDRY-PHELSG--GQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470 (539)
T ss_pred HhhhcccchHHHHHHHHHHHHHcCCCHHHHhcC-chhcCc--chhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHH
Confidence 1111000 011122221 23333 356776 999999999998764 333
Q ss_pred HHHHh-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 177 LSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 177 L~~~l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
|.+.+ ++.|.|.|||+|.... +.+.||++..|++++++..|.
T Consensus 471 Ll~~lq~e~g~t~lfISHDl~v------------------V~~i~drv~vm~~G~iVE~G~ 513 (539)
T COG1123 471 LLKDLQEELGLTYLFISHDLAV------------------VRYIADRVAVMYDGRIVEEGP 513 (539)
T ss_pred HHHHHHHHhCCEEEEEeCCHHH------------------HHhhCceEEEEECCeEEEeCC
Confidence 33333 4679999999997764 778999999999998887763
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.7e-13 Score=131.07 Aligned_cols=160 Identities=16% Similarity=0.180 Sum_probs=106.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC----CC--CC-HH----HHhhcccccCcceecCCCCHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE----HA--LD-PS----LAETIGVKTENLLLAQPDCGEQ 123 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e----~~--~~-~~----~~~~ig~~~~~~~~~~~~~~e~ 123 (366)
+++|++++|+|+||||||||++.+++.+.+..|. ++++++ .. .+ .. +.+.++|.+|+..+++..++.+
T Consensus 47 i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~-I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~e 125 (382)
T TIGR03415 47 IEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGS-VLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEE 125 (382)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE-EEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHH
Confidence 6799999999999999999999999998888887 567764 11 11 11 1246999999998888788877
Q ss_pred HHHHHHHHHh----------cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 124 ALSLVDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 124 ~l~~~~~~~~----------~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
++.+...... ..-...+-++...... ..++++ |++|+...||+++..
T Consensus 126 Ni~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~-~~~LSg--Gq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~ 202 (382)
T TIGR03415 126 NVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKK-PGELSG--GMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQ 202 (382)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence 7654321100 0001111122111112 234544 888888888887764
Q ss_pred HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++...+.+ .+.|||+++|..+. +..+||+++.|+++.++..++
T Consensus 203 l~~~L~~l~~~~~~TII~iTHdl~e------------------~~~l~DrI~vl~~G~iv~~g~ 248 (382)
T TIGR03415 203 LQDELLELQAKLNKTIIFVSHDLDE------------------ALKIGNRIAIMEGGRIIQHGT 248 (382)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEecC
Confidence 4444444443 59999999998765 556788999998877665543
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.1e-13 Score=116.21 Aligned_cols=137 Identities=19% Similarity=0.261 Sum_probs=91.1
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHH-------
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQA------- 124 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~------- 124 (366)
-+++|++++|.|+||||||||++.+++...+..|. +++++..... ..+.+.+++.+|+..++. .++.+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i~~~LS~ 101 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGE-ITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNNLGRRFSG 101 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCE-EEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHhhcccCCH
Confidence 37799999999999999999999999998887887 4566543211 234567899998876653 344443
Q ss_pred -----HHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 125 -----LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 125 -----l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
+.++..++ .+++++++|...+-... .-.+.+.+.|+++ . .+.|||+++|..+.
T Consensus 102 G~~qrv~laral~--~~p~~lllDEP~~~LD~-------------~~~~~l~~~l~~~----~-~~~tii~~sh~~~~-- 159 (178)
T cd03247 102 GERQRLALARILL--QDAPIVLLDEPTVGLDP-------------ITERQLLSLIFEV----L-KDKTLIWITHHLTG-- 159 (178)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEECCcccCCH-------------HHHHHHHHHHHHH----c-CCCEEEEEecCHHH--
Confidence 22233333 46789999988766520 1112233333333 3 37999999997654
Q ss_pred cccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 200 TFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 200 ~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+. .||+++.|+.+.+
T Consensus 160 ----------------~~-~~d~~~~l~~g~i 174 (178)
T cd03247 160 ----------------IE-HMDKILFLENGKI 174 (178)
T ss_pred ----------------HH-hCCEEEEEECCEE
Confidence 43 4788888876543
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-12 Score=111.78 Aligned_cols=131 Identities=15% Similarity=0.206 Sum_probs=89.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCcceecCCCCHHH--HHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQ--ALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~~~~~~~~~e~--~l~~~ 128 (366)
+++|++++|.|+||||||||++.+++...+..|. +++++..... ..+.+.+++.+| .+.-+ -+.++
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-v~~~g~~~~~~~~~~~~~~~i~~~~q-------LS~G~~qrl~la 94 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE-ILVDGKEVSFASPRDARRAGIAMVYQ-------LSVGERQMVEIA 94 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEECCcCCHHHHHhcCeEEEEe-------cCHHHHHHHHHH
Confidence 7899999999999999999999999998888887 5666654322 123456777766 44433 33344
Q ss_pred HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee
Q 017792 129 DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE 208 (366)
Q Consensus 129 ~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~ 208 (366)
..++ .+++++++|....-.. . ...+.+...|+.+ .+.+.|||+++|....
T Consensus 95 ral~--~~p~illlDEP~~~LD----------~---~~~~~l~~~l~~~----~~~~~tiii~sh~~~~----------- 144 (163)
T cd03216 95 RALA--RNARLLILDEPTAALT----------P---AEVERLFKVIRRL----RAQGVAVIFISHRLDE----------- 144 (163)
T ss_pred HHHh--cCCCEEEEECCCcCCC----------H---HHHHHHHHHHHHH----HHCCCEEEEEeCCHHH-----------
Confidence 4444 3689999999876552 0 1123333444444 3458999999997654
Q ss_pred eccCCceeeeeceEEEEEEEec
Q 017792 209 VTCGGNALKFYASVRLNIKRIG 230 (366)
Q Consensus 209 ~~~gG~~l~~~ad~~i~l~~~~ 230 (366)
+..+||+++.|.++.
T Consensus 145 -------~~~~~d~~~~l~~g~ 159 (163)
T cd03216 145 -------VFEIADRVTVLRDGR 159 (163)
T ss_pred -------HHHhCCEEEEEECCE
Confidence 455688888887654
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-13 Score=121.50 Aligned_cols=150 Identities=18% Similarity=0.224 Sum_probs=95.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceec--CCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLA--QPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~--~~~~~e~~l~~~~~~~ 132 (366)
+++|++++|+||||||||||++.+++...+..|. +++++.... .+.+.+++.+|+..+. .+.++.+.+.......
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~ 98 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGS-IRVFGKPLE--KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGH 98 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCE-EEECCccHH--HHHhheEEeccccccccCCCCcHHHHHHhccccc
Confidence 6799999999999999999999999988888887 556654321 3456789999886542 2256666554321100
Q ss_pred -----------hc---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 133 -----------RS---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 133 -----------~~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
.. .-...+-++...... ...+++ |++|+...||+++.. +.++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 175 (213)
T cd03235 99 KGLFRRLSKADKAKVDEALERVGLSELADRQ-IGELSG--GQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELL 175 (213)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCHHHHhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 00 000111111111111 234444 788888888877653 55555
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
..+.+.+.|||+++|..+. +..+||+++.|.+
T Consensus 176 ~~~~~~~~tvi~~sH~~~~------------------~~~~~d~i~~l~~ 207 (213)
T cd03235 176 RELRREGMTILVVTHDLGL------------------VLEYFDRVLLLNR 207 (213)
T ss_pred HHHHhcCCEEEEEeCCHHH------------------HHHhcCEEEEEcC
Confidence 5555568999999997764 4556888888865
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.3e-13 Score=122.30 Aligned_cols=156 Identities=16% Similarity=0.153 Sum_probs=98.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+.+|++++|+|+||||||||++.+++...+..|. +++++.... .....+.+++.+|+..++...++.+.+.......
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 102 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQ-ISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH 102 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceE-EEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc
Confidence 7799999999999999999999999988888787 556654322 2233457899999877666667766654322110
Q ss_pred hcC------C----ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 133 RSG------S----VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 133 ~~~------~----~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
... . ...+-++...... ...+++ |++|+...||+++.. +.++...+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS~--G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 179 (236)
T TIGR03864 103 GLSRAEARERIAALLARLGLAERADDK-VRELNG--GHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALC 179 (236)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH
Confidence 000 0 0000011110111 123443 788888888877654 445554444
Q ss_pred -hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 183 -LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 183 -~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+.+.|||+++|..+. +. .||+++.|.++.++.
T Consensus 180 ~~~~~tiii~sH~~~~------------------~~-~~d~i~~l~~G~i~~ 212 (236)
T TIGR03864 180 RDQGLSVLWATHLVDE------------------IE-ADDRLVVLHRGRVLA 212 (236)
T ss_pred HhCCCEEEEEecChhh------------------Hh-hCCEEEEEeCCeEEE
Confidence 358999999997654 43 388888888765443
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5e-13 Score=125.61 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=100.3
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC------C-HHHHhhcccccCcc--eecCCCCHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL------D-PSLAETIGVKTENL--LLAQPDCGEQA 124 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~------~-~~~~~~ig~~~~~~--~~~~~~~~e~~ 124 (366)
-+++|++++|+|+||||||||++.+++.+.+..|. +++++.... . ..+.+.++|.+|+. .++. .++.+.
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~ 106 (280)
T PRK13649 29 TIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGS-VRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKD 106 (280)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHH
Confidence 37799999999999999999999999988888887 566664321 1 23456789999985 3333 477666
Q ss_pred HHHHHHHHhcC--C--------ceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 125 LSLVDTLIRSG--S--------VDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~--~--------~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
+.+........ . ...+-++ ..... +...+++ |++|+...||+++..
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 183 (280)
T PRK13649 107 VAFGPQNFGVSQEEAEALAREKLALVGISESLFEK-NPFELSG--GQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKE 183 (280)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC-CcccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 54321110000 0 0011111 01111 1234444 888888888887654
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+..+...+++.++|||+++|..+. +..+||+++.|.++.+..
T Consensus 184 l~~~l~~~~~~~~tiiivsH~~~~------------------~~~~~d~i~~l~~G~i~~ 225 (280)
T PRK13649 184 LMTLFKKLHQSGMTIVLVTHLMDD------------------VANYADFVYVLEKGKLVL 225 (280)
T ss_pred HHHHHHHHHHCCCEEEEEeccHHH------------------HHHhCCEEEEEECCEEEE
Confidence 555555555568999999997654 556789999998765443
|
|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=99.41 E-value=8e-12 Score=114.75 Aligned_cols=194 Identities=19% Similarity=0.240 Sum_probs=113.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhh------------cCCeEEEEeCCCCCCH--HHHhhccccc------Cccee--
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQR------------QGGYCVFIDAEHALDP--SLAETIGVKT------ENLLL-- 115 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~------------~gg~vl~id~e~~~~~--~~~~~ig~~~------~~~~~-- 115 (366)
|.+..|+||+|+|||+|+++++..++. .+++|+|++.|+..+. .+...++... .++.+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~ 80 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDS 80 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEec
Confidence 678999999999999999999986542 4678999999987652 2223332211 11211
Q ss_pred --------cCCC--CHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcC
Q 017792 116 --------AQPD--CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQ 185 (366)
Q Consensus 116 --------~~~~--~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~ 185 (366)
.... .....++.+...+...++++++||++..+....+.+ . ...+.+...|.++. ++.|
T Consensus 81 g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d-----~---~~~~~~~~~L~~~a---~~~g 149 (239)
T cd01125 81 GRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSEND-----N---GAMDAVIKALRRIA---AQTG 149 (239)
T ss_pred cCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCC-----H---HHHHHHHHHHHHHH---HHhC
Confidence 1110 122333333333334679999999988774211111 1 12233334444444 5679
Q ss_pred cEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec-----CccccccEEEEEEEecCCC-CCCCee
Q 017792 186 TILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK-----GEETIGSQIAVKIVKNKLA-PPFKTA 259 (366)
Q Consensus 186 ~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~-----~~~~~g~~~~l~v~K~r~~-~~~~~~ 259 (366)
++||+++|.++.-... ........|..++...++.++.+.+...... +.+..+..+++.+.|+.++ +|....
T Consensus 150 ~avl~v~H~~K~~~~~--~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~~~~~~~~~ 227 (239)
T cd01125 150 AAILLVHHVRKGSAKD--GDTQEAARGASALVDGARWVRALTRMTSEEAEKMGVGKAQPGLFFRFGVSKKNNAAATEADR 227 (239)
T ss_pred CEEEEEeccCcccccC--cccccccCcHHHHhcccceEEEEeeCCHHHHHhcCCChhhcceEEEecccccccCCCCCCCe
Confidence 9999999988653211 0122445677778888888888886532111 1122233445678888887 665555
Q ss_pred EEEEE
Q 017792 260 QFELE 264 (366)
Q Consensus 260 ~~~i~ 264 (366)
.|...
T Consensus 228 w~~~~ 232 (239)
T cd01125 228 WYRRN 232 (239)
T ss_pred EEEEc
Confidence 55554
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.3e-13 Score=121.43 Aligned_cols=155 Identities=21% Similarity=0.230 Sum_probs=98.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
+++|++++|+|+||||||||++.+++.+.+..|. +++++.... . ..+.+.+++.+|+..++. .++.+.+......
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~ 103 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS-ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPML 103 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhh
Confidence 6799999999999999999999999988888887 455654321 1 244567899999876654 4666554321110
Q ss_pred Hhc------CCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhh-
Q 017792 132 IRS------GSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSL- 183 (366)
Q Consensus 132 ~~~------~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~- 183 (366)
... .-...+-++ .+.... ...+++ |++|+...||+++.. +..+...+++
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS~--G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 180 (241)
T PRK14250 104 KGEKNVDVEYYLSIVGLNKEYATRD-VKNLSG--GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNK 180 (241)
T ss_pred cCcHHHHHHHHHHHcCCCHHHhhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 000 000011111 111111 233444 788888888877654 4455555444
Q ss_pred cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 184 ~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
.+.|||+++|..+. +..+||+++.|.++.+.
T Consensus 181 ~g~tii~~sH~~~~------------------~~~~~d~i~~l~~G~i~ 211 (241)
T PRK14250 181 MNLTVIWITHNMEQ------------------AKRIGDYTAFLNKGILV 211 (241)
T ss_pred CCCEEEEEeccHHH------------------HHHhCCEEEEEeCCEEE
Confidence 58999999997764 45678999998876543
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.2e-13 Score=122.39 Aligned_cols=157 Identities=16% Similarity=0.165 Sum_probs=100.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHH-HhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSL-AETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~-~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+.+|++++|+|+||||||||++.+++...+..|. +++++..... ..+ ...+++.+|+..++...++.+.+.....
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 106 (255)
T PRK11300 28 VREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGT-ILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQH 106 (255)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcce-EEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhh
Confidence 6799999999999999999999999998888887 5666654322 122 2347778898877777788776654211
Q ss_pred ----------HHh-----cC------C----ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH------------
Q 017792 131 ----------LIR-----SG------S----VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------ 173 (366)
Q Consensus 131 ----------~~~-----~~------~----~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------ 173 (366)
... .. . .+.+-++....-. ...+++ |++|+...|+++...
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEPt~~ 183 (255)
T PRK11300 107 QQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ-AGNLAY--GQQRRLEIARCMVTQPEILMLDEPAAG 183 (255)
T ss_pred ccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 000 00 0 0000011111111 123443 788888888877654
Q ss_pred --------HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 --------LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 --------L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+.++...+++ .++|||+++|..+. +..+||.++.|+++.+..
T Consensus 184 LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~------------------~~~~~d~i~~l~~g~i~~ 234 (255)
T PRK11300 184 LNPKETKELDELIAELRNEHNVTVLLIEHDMKL------------------VMGISDRIYVVNQGTPLA 234 (255)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCeEEe
Confidence 5555555554 48999999997664 556789998888765443
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.6e-13 Score=125.53 Aligned_cols=158 Identities=20% Similarity=0.269 Sum_probs=101.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCcce-ecCCCCHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLL-LAQPDCGEQALSLVD 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~~ 129 (366)
|++|++++|+|+||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|++. .+...++.+.+.+..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~ 103 (274)
T PRK13644 25 IKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGK-VLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGP 103 (274)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhH
Confidence 7799999999999999999999999988887786 5666654321 345567999998864 233456666554321
Q ss_pred HHH-------hc---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHH
Q 017792 130 TLI-------RS---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSH 179 (366)
Q Consensus 130 ~~~-------~~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~ 179 (366)
... .. .-...+-++...... ...+++ |++|+...||+++.. +.++..
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS~--G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 180 (274)
T PRK13644 104 ENLCLPPIEIRKRVDRALAEIGLEKYRHRS-PKTLSG--GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIK 180 (274)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 110 00 000011111111111 234444 788888888887654 555555
Q ss_pred HhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 180 SLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 180 ~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
.+++.|.|||+++|..+. +. .||+++.|.++.++..+
T Consensus 181 ~l~~~g~til~~tH~~~~------------------~~-~~d~v~~l~~G~i~~~g 217 (274)
T PRK13644 181 KLHEKGKTIVYITHNLEE------------------LH-DADRIIVMDRGKIVLEG 217 (274)
T ss_pred HHHhCCCEEEEEecCHHH------------------Hh-hCCEEEEEECCEEEEEC
Confidence 555679999999997764 43 48999999887655443
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.3e-13 Score=130.96 Aligned_cols=164 Identities=23% Similarity=0.242 Sum_probs=110.8
Q ss_pred ChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CHHHHhh--cccccCcceecC
Q 017792 42 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAET--IGVKTENLLLAQ 117 (366)
Q Consensus 42 G~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~~~~~~--ig~~~~~~~~~~ 117 (366)
|+..||.+-- -+.+|++++|+|.||+|||||++.+++.+++.+|. ++++++... ++.-++. +.+++|++.+++
T Consensus 20 gV~AL~~v~l--~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~-I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p 96 (500)
T COG1129 20 GVKALDGVSL--TVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGE-ILIDGKPVAFSSPRDALAAGIATVHQELSLVP 96 (500)
T ss_pred Cceeecccee--EEeCceEEEEecCCCCCHHHHHHHHhCcccCCCce-EEECCEEccCCCHHHHHhCCcEEEeechhccC
Confidence 4455554422 37799999999999999999999999999999886 777776442 3444444 556788888888
Q ss_pred CCCHHHHHHHHH-------------------HHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-----
Q 017792 118 PDCGEQALSLVD-------------------TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA----- 173 (366)
Q Consensus 118 ~~~~e~~l~~~~-------------------~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~----- 173 (366)
..|+.+++-+-. .++...... +| +.... ..++ .+++|...+||+++..
T Consensus 97 ~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~---~~-~~~~v--~~Ls--iaqrQ~VeIArAl~~~arllI 168 (500)
T COG1129 97 NLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD---ID-PDTLV--GDLS--IAQRQMVEIARALSFDARVLI 168 (500)
T ss_pred CccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC---CC-hhhhh--hhCC--HHHHHHHHHHHHHhcCCCEEE
Confidence 777766653211 111111111 11 22222 2222 3677777777776543
Q ss_pred ---------------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---------------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---------------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
|.++.+.|++.|++||+|||..++ +..+||++..|+++..+..
T Consensus 169 lDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~E------------------i~~i~DritVlRDG~~v~~ 226 (500)
T COG1129 169 LDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDE------------------VFEIADRITVLRDGRVVGT 226 (500)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHH------------------HHHhcCEEEEEeCCEEeee
Confidence 778888888999999999998776 5567788877877765543
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.9e-13 Score=115.16 Aligned_cols=134 Identities=18% Similarity=0.256 Sum_probs=90.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHH-------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQA------- 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~------- 124 (366)
+++|++++|.||||||||||++.+++...+..|. ++++++... . ..+.+.+++.+++..+++ .++.+.
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~lLS~G~~ 102 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGE-ILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENILSGGQR 102 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCE-EEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHhhCHHHH
Confidence 7799999999999999999999999998888887 566665432 1 244567899988876654 465544
Q ss_pred --HHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccccc
Q 017792 125 --LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFG 202 (366)
Q Consensus 125 --l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~ 202 (366)
+.++..++ .+++++++|...+-... .-.+ .+.++...+.+ ++|||+++|..+.
T Consensus 103 ~rl~la~al~--~~p~llllDEP~~gLD~-------------~~~~----~l~~~l~~~~~-~~tii~~sh~~~~----- 157 (171)
T cd03228 103 QRIAIARALL--RDPPILILDEATSALDP-------------ETEA----LILEALRALAK-GKTVIVIAHRLST----- 157 (171)
T ss_pred HHHHHHHHHh--cCCCEEEEECCCcCCCH-------------HHHH----HHHHHHHHhcC-CCEEEEEecCHHH-----
Confidence 22333333 36799999998766520 0112 23333333333 6999999997654
Q ss_pred CCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 203 FGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 203 ~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
+.. ||.++.|+++
T Consensus 158 -------------~~~-~d~~~~l~~g 170 (171)
T cd03228 158 -------------IRD-ADRIIVLDDG 170 (171)
T ss_pred -------------HHh-CCEEEEEcCC
Confidence 444 7887777643
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-12 Score=122.24 Aligned_cols=158 Identities=14% Similarity=0.123 Sum_probs=100.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEeCCCCCC--------HHHHhhcccccCcceecCCCCHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALD--------PSLAETIGVKTENLLLAQPDCGEQ 123 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~---gg~vl~id~e~~~~--------~~~~~~ig~~~~~~~~~~~~~~e~ 123 (366)
+++|++++|+|+||||||||++.+++.+.+. +|. +++++..... ..+.+.+++.+|+..++...++.+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 105 (262)
T PRK09984 27 IHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSH-IELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLE 105 (262)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceE-EEECCEecccccccchhHHHHHhheEEEccccccccCCcHHH
Confidence 6799999999999999999999999988764 355 5666654321 233567899999887776677776
Q ss_pred HHHHHHHH-----------Hhc-------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH------------
Q 017792 124 ALSLVDTL-----------IRS-------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------ 173 (366)
Q Consensus 124 ~l~~~~~~-----------~~~-------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------ 173 (366)
.+...... ... .-...+-++...... ...+++ |++|+...+|++...
T Consensus 106 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~ 182 (262)
T PRK09984 106 NVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR-VSTLSG--GQQQRVAIARALMQQAKVILADEPIAS 182 (262)
T ss_pred HHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC-ccccCH--HHHHHHHHHHHHhcCCCEEEecCcccc
Confidence 66432100 000 000001111111111 123443 788888888877653
Q ss_pred --------HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 --------LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 --------L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+ .+.|||+++|.... +..+||+++.|.++.+...
T Consensus 183 LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~------------------~~~~~d~i~~l~~g~i~~~ 234 (262)
T PRK09984 183 LDPESARIVMDTLRDINQNDGITVVVTLHQVDY------------------ALRYCERIVALRQGHVFYD 234 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 5555555543 48999999997654 4567899999887654433
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-12 Score=123.49 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=102.5
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-------HHHHhhcccccCcc--eecCCCCHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENL--LLAQPDCGEQA 124 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-------~~~~~~ig~~~~~~--~~~~~~~~e~~ 124 (366)
=|++|++++|+|+||||||||++.+++...+..|. +++++..... ..+.+.+|+.+|++ .++. .++.+.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~ 106 (286)
T PRK13646 29 EFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGT-VTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVERE 106 (286)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHH
Confidence 37799999999999999999999999998888887 5667654321 24567899999975 2332 366665
Q ss_pred HHHHHHHH-------hc---CCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 125 LSLVDTLI-------RS---GSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 125 l~~~~~~~-------~~---~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
+.+..... .. .-...+-++ ....- +...+++ |++|+...||+++..
T Consensus 107 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~~LSg--Gq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~ 183 (286)
T PRK13646 107 IIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQ-SPFQMSG--GQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQ 183 (286)
T ss_pred HHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC-CcccCCH--HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHH
Confidence 54321100 00 000011111 11111 1233444 888888888887664
Q ss_pred HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+..+...+++ .|+|||+++|..+. +..+||+++.|.++.++..+
T Consensus 184 l~~~l~~l~~~~g~tvl~vtH~~~~------------------~~~~~dri~~l~~G~i~~~g 228 (286)
T PRK13646 184 VMRLLKSLQTDENKTIILVSHDMNE------------------VARYADEVIVMKEGSIVSQT 228 (286)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEEEC
Confidence 5565655543 58999999997764 45678999999887655444
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-12 Score=123.01 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=100.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcce-ecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLL-LAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~~~ 130 (366)
+++|++++|+|+||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+.. .....++.+.+.....
T Consensus 27 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~ 105 (277)
T PRK13652 27 APRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGS-VLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPI 105 (277)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHH
Confidence 6799999999999999999999999988888887 5666654322 355677899998863 2224566666543211
Q ss_pred HHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHH
Q 017792 131 LIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHS 180 (366)
Q Consensus 131 ~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~ 180 (366)
..... -...+-+....... ...+++ |++++...+|+++.. +.++...
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~ 182 (277)
T PRK13652 106 NLGLDEETVAHRVSSALHMLGLEELRDRV-PHHLSG--GEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLND 182 (277)
T ss_pred HcCCCHHHHHHHHHHHHHHCCChhHhcCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 00000 00000011110111 123443 778877888877654 5555555
Q ss_pred hhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 181 LSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 181 l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.+ .++|||+++|..+. +..+||+++.|+++.++..+
T Consensus 183 l~~~~g~tvli~tH~~~~------------------~~~~~drv~~l~~G~i~~~g 220 (277)
T PRK13652 183 LPETYGMTVIFSTHQLDL------------------VPEMADYIYVMDKGRIVAYG 220 (277)
T ss_pred HHHhcCCEEEEEecCHHH------------------HHHhCCEEEEEECCeEEEEC
Confidence 544 48999999997664 55678999999887655444
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=1e-12 Score=119.04 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=98.4
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H-H---H-HhhcccccCcceecCCCCHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-S---L-AETIGVKTENLLLAQPDCGEQALS 126 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~-~---~-~~~ig~~~~~~~~~~~~~~e~~l~ 126 (366)
-+++|++++|+||||||||||++.+++...+..|. ++++++.... . . + .+.+++.+|+..++...++.+.+.
T Consensus 27 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~ 105 (221)
T TIGR02211 27 SIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE-VLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVA 105 (221)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHH
Confidence 36799999999999999999999999998888887 5666553221 1 1 2 256999999987777778777665
Q ss_pred HHHHHHhc----------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 127 LVDTLIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 127 ~~~~~~~~----------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
........ .-...+-++...... ...+++ |++|+...||+++.. +.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~ 182 (221)
T TIGR02211 106 MPLLIGKKSVKEAKERAYEMLEKVGLEHRINHR-PSELSG--GERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFD 182 (221)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCCH--HHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHH
Confidence 42110000 000111112111111 134444 788888888877654 555
Q ss_pred HHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEec
Q 017792 177 LSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 230 (366)
Q Consensus 177 L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~ 230 (366)
+...+.+ .+.|||+++|.... +.. +|+++.|.++.
T Consensus 183 ~l~~~~~~~~~tii~~tH~~~~------------------~~~-~d~v~~l~~G~ 218 (221)
T TIGR02211 183 LMLELNRELNTSFLVVTHDLEL------------------AKK-LDRVLEMKDGQ 218 (221)
T ss_pred HHHHHHHhcCCEEEEEeCCHHH------------------Hhh-cCEEEEEeCCE
Confidence 5555543 58999999997653 333 58888887653
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.1e-13 Score=122.10 Aligned_cols=158 Identities=15% Similarity=0.218 Sum_probs=103.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHH-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI- 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~- 132 (366)
+.+|++++|+|+||||||||++.+++.+.+..|. ++++++.... ....+.+++.+++..++...++.+.+.......
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~-i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~ 101 (232)
T cd03300 23 IKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGE-ILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK 101 (232)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC
Confidence 6699999999999999999999999999887776 5666654322 123467899999887776667776654322110
Q ss_pred ------h---cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhh
Q 017792 133 ------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSL 183 (366)
Q Consensus 133 ------~---~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~ 183 (366)
. ..-...+-++...... ...+++ |++++...+|++... +.++...+++
T Consensus 102 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~lS~--G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~ 178 (232)
T cd03300 102 LPKAEIKERVAEALDLVQLEGYANRK-PSQLSG--GQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQK 178 (232)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 0 0001111122211111 133443 788888888877653 5555555554
Q ss_pred -cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 184 -SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 184 -~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
.++|||+++|.... +..+||+++.|.++.+...
T Consensus 179 ~~~~tiii~sh~~~~------------------~~~~~d~i~~l~~G~~~~~ 212 (232)
T cd03300 179 ELGITFVFVTHDQEE------------------ALTMSDRIAVMNKGKIQQI 212 (232)
T ss_pred HcCCEEEEEeCCHHH------------------HHHhcCEEEEEECCEEEec
Confidence 48999999997754 5567899999987654433
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.40 E-value=6e-13 Score=122.02 Aligned_cols=155 Identities=17% Similarity=0.156 Sum_probs=96.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CHHHHhhccccc-CcceecCCCCHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKT-ENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~~~~~~ig~~~-~~~~~~~~~~~e~~l~~~~~~ 131 (366)
+++|++++|+|+||||||||++.+++.+.+..|. +++++.... ...+.+.+++.+ +...++...++.+.+......
T Consensus 44 i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~ 122 (236)
T cd03267 44 IEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGE-VRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAI 122 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceE-EEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHH
Confidence 6799999999999999999999999988888786 556654322 123456788876 445555566777766543221
Q ss_pred HhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh
Q 017792 132 IRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 181 (366)
Q Consensus 132 ~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l 181 (366)
.... -.+.+-++...... ...+++ |++++...+++++.. +..+...+
T Consensus 123 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS~--G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 199 (236)
T cd03267 123 YDLPPARFKKRLDELSELLDLEELLDTP-VRQLSL--GQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEY 199 (236)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 1000 00111111111111 123443 777777777777653 55555544
Q ss_pred hh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 182 SL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 182 ~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
.+ .++|||+++|..+. +..+||.++.|.++.+
T Consensus 200 ~~~~~~tiiivsH~~~~------------------~~~~~d~i~~l~~G~i 232 (236)
T cd03267 200 NRERGTTVLLTSHYMKD------------------IEALARRVLVIDKGRL 232 (236)
T ss_pred HhcCCCEEEEEecCHHH------------------HHHhCCEEEEEeCCEE
Confidence 33 48999999997764 5567888888876643
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-12 Score=117.13 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=96.0
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
-+.+|++++|.|+||||||||++.+++.+.+..|. ++++++......+.+.+++.+++..+....++.+.+........
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~ 111 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQ-IQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG 111 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCee-EEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC
Confidence 37799999999999999999999999998888887 55666543333344568888888776666677666544321100
Q ss_pred cC-------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhhcCc
Q 017792 134 SG-------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSLSQT 186 (366)
Q Consensus 134 ~~-------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~~~~ 186 (366)
.. -...+-+....... ...+++ |++++...+|+++.. +..+...+.+.+.
T Consensus 112 ~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 188 (214)
T PRK13543 112 RRAKQMPGSALAIVGLAGYEDTL-VRQLSA--GQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGG 188 (214)
T ss_pred CcHHHHHHHHHHHcCChhhccCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCC
Confidence 00 00001011111111 123333 777777777776643 5555555556689
Q ss_pred EEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEE
Q 017792 187 ILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIK 227 (366)
Q Consensus 187 tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~ 227 (366)
|||+++|.... +..+|++++.+.
T Consensus 189 tiii~sH~~~~------------------~~~~~~~i~~l~ 211 (214)
T PRK13543 189 AALVTTHGAYA------------------APPVRTRMLTLE 211 (214)
T ss_pred EEEEEecChhh------------------hhhhcceEEEEe
Confidence 99999997765 555677776664
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.4e-13 Score=122.44 Aligned_cols=150 Identities=19% Similarity=0.180 Sum_probs=96.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... ....+++.+|+..++...++.+.+.........
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 100 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGS-ITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGV 100 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECCC--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCC
Confidence 6799999999999999999999999988888887 4566543322 123578888887776667777766542111000
Q ss_pred C----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh-hh
Q 017792 135 G----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-SL 183 (366)
Q Consensus 135 ~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l-~~ 183 (366)
. -...+-++...... ...+++ |++|+...+|+++.. +..+...+ ++
T Consensus 101 ~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LSg--Gq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 177 (255)
T PRK11248 101 EKMQRLEIAHQMLKKVGLEGAEKRY-IWQLSG--GQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE 177 (255)
T ss_pred CHHHHHHHHHHHHHHcCChhHhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 0 00011111111111 133444 788888888877654 55555554 34
Q ss_pred cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 184 ~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
.++|||+++|..+. +..+||+++.|++
T Consensus 178 ~g~tviivsH~~~~------------------~~~~~d~i~~l~~ 204 (255)
T PRK11248 178 TGKQVLLITHDIEE------------------AVFMATELVLLSP 204 (255)
T ss_pred cCCEEEEEeCCHHH------------------HHHhCCEEEEEeC
Confidence 58999999997764 5567898888873
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-12 Score=122.94 Aligned_cols=158 Identities=15% Similarity=0.123 Sum_probs=99.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcce-ecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLL-LAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~~~ 130 (366)
|.+|++++|+|+||||||||++.+++.+.+..|. +++++..... ..+.+.++|.+|++. .+...++.+.+.+...
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~-i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~ 108 (279)
T PRK13635 30 VYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGT-ITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLE 108 (279)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcE-EEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHh
Confidence 7799999999999999999999999999888887 5666654322 245667999999863 3444566666543211
Q ss_pred HHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHH
Q 017792 131 LIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHS 180 (366)
Q Consensus 131 ~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~ 180 (366)
..... -...+-+....... ...+++ |++++...+|+++.. +.++...
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LS~--G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 185 (279)
T PRK13635 109 NIGVPREEMVERVDQALRQVGMEDFLNRE-PHRLSG--GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQ 185 (279)
T ss_pred hCCCCHHHHHHHHHHHHHHcCChhhhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 10000 00011111111111 123443 777777777776654 5555555
Q ss_pred hhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 181 LSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 181 l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.+ .++|||+++|..+. +. .||+++.|.++.+...+
T Consensus 186 l~~~~~~tilivsH~~~~------------------~~-~~d~i~~l~~G~i~~~g 222 (279)
T PRK13635 186 LKEQKGITVLSITHDLDE------------------AA-QADRVIVMNKGEILEEG 222 (279)
T ss_pred HHHcCCCEEEEEecCHHH------------------HH-cCCEEEEEECCEEEEEC
Confidence 554 48999999997654 44 38999999877654433
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-12 Score=120.77 Aligned_cols=158 Identities=15% Similarity=0.153 Sum_probs=100.5
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQ 123 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~ 123 (366)
-+++|++++|+|+||||||||++.+++...+ ..|. +++++..... ..+.+.++|.+|+..++. .++.+
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e 111 (258)
T PRK14268 34 QIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGK-VSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYD 111 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceE-EEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHH
Confidence 3779999999999999999999999988764 4665 5666654321 234567999999877665 67777
Q ss_pred HHHHHHHHHhcC----------CceEEEEe-cccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 124 ALSLVDTLIRSG----------SVDVVVVD-SVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 124 ~l~~~~~~~~~~----------~~~lvviD-sl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
.+.+........ -...+-++ .+.... +...+++ |++|+...||+++..
T Consensus 112 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg--G~~qrv~laral~~~p~llllDEPt~~LD~~~ 189 (258)
T PRK14268 112 NVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSG--GQQQRLCIARTLAVKPKIILFDEPTSALDPIS 189 (258)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHH
Confidence 665432110000 00000000 000111 1233444 888888888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++.+.+.+ ++|||+++|.... +..+||+++.|.++++...
T Consensus 190 ~~~l~~~l~~l~~-~~tiiivsH~~~~------------------~~~~~d~i~~l~~G~i~~~ 234 (258)
T PRK14268 190 TARIEDLIMNLKK-DYTIVIVTHNMQQ------------------AARISDYTGFFLMGELIEF 234 (258)
T ss_pred HHHHHHHHHHHhh-CCEEEEEECCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 5555555544 7999999997654 5567899999987765443
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.9e-13 Score=122.37 Aligned_cols=156 Identities=16% Similarity=0.151 Sum_probs=101.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-----gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++...+. .|. +++++..... ..+.+.+++.+|+..++. .++.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~ 101 (247)
T TIGR00972 24 IPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGK-VLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDN 101 (247)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceE-EEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHH
Confidence 7799999999999999999999999998876 776 5566654321 234567999999877666 777766
Q ss_pred HHHHHHHHhcCC-----------ceEEEEe----cccccCCCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 125 LSLVDTLIRSGS-----------VDVVVVD----SVAALVPKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~~-----------~~lvviD----sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
+........... ...+-++ ..... +...+++ |++|+...||+++..
T Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~LSg--G~~qrv~laral~~~p~llllDEPt~~LD~~ 178 (247)
T TIGR00972 102 IAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHD-SALGLSG--GQQQRLCIARALAVEPEVLLLDEPTSALDPI 178 (247)
T ss_pred HHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhC-CcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 543221100000 0000011 10011 1234444 888888888887754
Q ss_pred ----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+++ ++|||+++|.... +..+||+++.|+++.+...
T Consensus 179 ~~~~l~~~l~~~~~-~~tiiivsH~~~~------------------~~~~~d~i~~l~~G~i~~~ 224 (247)
T TIGR00972 179 ATGKIEELIQELKK-KYTIVIVTHNMQQ------------------AARISDRTAFFYDGELVEY 224 (247)
T ss_pred HHHHHHHHHHHHHh-cCeEEEEecCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 5555555555 4899999997654 5567899999987765433
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-12 Score=122.40 Aligned_cols=159 Identities=16% Similarity=0.180 Sum_probs=101.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H----HHHhhcccccCcc--eecCCCCHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P----SLAETIGVKTENL--LLAQPDCGEQALS 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~----~~~~~ig~~~~~~--~~~~~~~~e~~l~ 126 (366)
+++|++++|.|+||||||||++.+++.+.+..|. ++++++.... . .+.+.+++.+|+. .+....++.+.+.
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~ 112 (265)
T TIGR02769 34 IEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGT-VSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIG 112 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHH
Confidence 6799999999999999999999999988888887 5666654322 1 2345699999986 3445567766553
Q ss_pred HHHHHHhcC-----------CceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH--------------------H
Q 017792 127 LVDTLIRSG-----------SVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------L 174 (366)
Q Consensus 127 ~~~~~~~~~-----------~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L 174 (366)
......... -...+-++ .+.... ...+++ |++|+...||+++.. +
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~LSg--Ge~qrv~laral~~~p~illLDEPt~~LD~~~~~~l 189 (265)
T TIGR02769 113 EPLRHLTSLDESEQKARIAELLDMVGLRSEDADKL-PRQLSG--GQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVI 189 (265)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 211100000 00111111 111111 234444 888888888887654 4
Q ss_pred HHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 175 RKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 175 ~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
.++...+.+ .+.|||+++|.... +..+||.++.|.++.++..+
T Consensus 190 ~~~l~~~~~~~g~tiiivsH~~~~------------------~~~~~d~i~~l~~G~i~~~g 233 (265)
T TIGR02769 190 LELLRKLQQAFGTAYLFITHDLRL------------------VQSFCQRVAVMDKGQIVEEC 233 (265)
T ss_pred HHHHHHHHHhcCcEEEEEeCCHHH------------------HHHHhcEEEEEeCCEEEEEC
Confidence 455554444 48999999997654 55678999999877654443
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-12 Score=116.26 Aligned_cols=142 Identities=13% Similarity=0.048 Sum_probs=91.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh---hcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ---RQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~---~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
+++|++++|+|+||||||||++.+++... +..|. +++++..... ..+.+.+++.+|+..++...++.+.+....
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~-i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 108 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGD-IHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFAL 108 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceE-EEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhh
Confidence 67999999999999999999999999987 56676 5666654322 344567899998877777778888765432
Q ss_pred HHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhh-cCcEE
Q 017792 130 TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSL-SQTIL 188 (366)
Q Consensus 130 ~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~-~~~tV 188 (366)
... .+ . ....+++ |++|+...||+++.. +.++...+.+ .+.++
T Consensus 109 ~~~---------~~---~--~~~~LS~--Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ 172 (202)
T cd03233 109 RCK---------GN---E--FVRGISG--GERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTT 172 (202)
T ss_pred hhc---------cc---c--chhhCCH--HHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 210 00 0 0122332 566666666665543 4444444433 36776
Q ss_pred EEEe-cCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 189 IFIN-QVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 189 I~i~-h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
|+++ |.... +..+||.++.|.++++
T Consensus 173 ii~~~h~~~~------------------~~~~~d~i~~l~~G~i 198 (202)
T cd03233 173 FVSLYQASDE------------------IYDLFDKVLVLYEGRQ 198 (202)
T ss_pred EEEEcCCHHH------------------HHHhCCeEEEEECCEE
Confidence 6654 53333 5567899998887654
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.2e-13 Score=120.25 Aligned_cols=158 Identities=18% Similarity=0.142 Sum_probs=98.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh----cCCeEEEEeCCCCCCHHH-HhhcccccCcce--ecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR----QGGYCVFIDAEHALDPSL-AETIGVKTENLL--LAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~----~gg~vl~id~e~~~~~~~-~~~ig~~~~~~~--~~~~~~~e~~l~~ 127 (366)
+++|++++|.||||||||||++.+++...+ ..|. +++++........ .+.+++.+|+.. +....++.+.+..
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~-i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~ 87 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGE-ILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIE 87 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccE-EEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHH
Confidence 679999999999999999999999999887 6776 5677654332222 357899998863 3344566554432
Q ss_pred HHHHHhcCC----------ceEEEEe---cccccCCCCccCCccchhhHHHHHHHHHHH--------------------H
Q 017792 128 VDTLIRSGS----------VDVVVVD---SVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------L 174 (366)
Q Consensus 128 ~~~~~~~~~----------~~lvviD---sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L 174 (366)
......... .+.+-++ .+... +...+++ |++|+...||+++.. +
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~LS~--G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l 164 (230)
T TIGR02770 88 TLRSLGKLSKQARALILEALEAVGLPDPEEVLKK-YPFQLSG--GMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARV 164 (230)
T ss_pred HHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhC-ChhhcCH--HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHH
Confidence 111000000 0000011 01111 1133444 888888888887654 4
Q ss_pred HHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 175 RKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 175 ~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
.++...+.+ .++|||+++|..+. +..+||+++.|.++.+...
T Consensus 165 ~~~l~~~~~~~~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 207 (230)
T TIGR02770 165 LKLLRELRQLFGTGILLITHDLGV------------------VARIADEVAVMDDGRIVER 207 (230)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 455554444 58999999997664 5567899999987765443
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-12 Score=119.49 Aligned_cols=156 Identities=17% Similarity=0.201 Sum_probs=98.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~-----~~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++... +..|. ++++++... + ..+.+.+++.+|+..++. .++.+.
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 106 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGE-ILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFEN 106 (253)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceE-EEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHH
Confidence 67999999999999999999999998763 24565 667765432 1 234567999999876665 477776
Q ss_pred HHHHHHHHhcC-------C----ceEEEE-ecccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSG-------S----VDVVVV-DSVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~-------~----~~lvvi-Dsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+.......... . .+.+-+ +.+.... +...+++ |++|+...||+++..
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg--Gq~qrv~laral~~~p~llllDEPt~~LD~~~ 184 (253)
T PRK14242 107 VAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSG--GQQQRLCIARALAVEPEVLLMDEPASALDPIA 184 (253)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 65422110000 0 000000 0000111 1233444 888888888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+.++...+++ +.|||+++|.... +..+||+++.|+++.+..
T Consensus 185 ~~~l~~~l~~~~~-~~tvii~tH~~~~------------------~~~~~d~v~~l~~G~i~~ 228 (253)
T PRK14242 185 TQKIEELIHELKA-RYTIIIVTHNMQQ------------------AARVSDVTAFFYMGKLIE 228 (253)
T ss_pred HHHHHHHHHHHhc-CCeEEEEEecHHH------------------HHHhCCEEEEEECCEEEE
Confidence 5555555544 7899999997654 556789999998765443
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-12 Score=116.79 Aligned_cols=142 Identities=20% Similarity=0.232 Sum_probs=92.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH--hhcCCeEEEEeCCCCCC--H-HH-HhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFIDAEHALD--P-SL-AETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~--~~~gg~vl~id~e~~~~--~-~~-~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+.+|++++|+|+||||||||++.+++.. .+..|. ++++++.... . .+ ...+++.+|+..++...++++++...
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~ 101 (200)
T cd03217 23 IKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGE-ILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV 101 (200)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccE-EEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc
Confidence 6699999999999999999999999884 566776 5666654332 2 22 33588999887766656666554221
Q ss_pred ---------------HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEec
Q 017792 129 ---------------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ 193 (366)
Q Consensus 129 ---------------~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h 193 (366)
..+ ..+++++++|....-... .-.+.+...|+++ .+.++|||+++|
T Consensus 102 ~~~LS~G~~qrv~laral--~~~p~illlDEPt~~LD~-------------~~~~~l~~~L~~~----~~~~~tiii~sh 162 (200)
T cd03217 102 NEGFSGGEKKRNEILQLL--LLEPDLAILDEPDSGLDI-------------DALRLVAEVINKL----REEGKSVLIITH 162 (200)
T ss_pred cccCCHHHHHHHHHHHHH--hcCCCEEEEeCCCccCCH-------------HHHHHHHHHHHHH----HHCCCEEEEEec
Confidence 112 235778888887655420 1112233334333 345899999999
Q ss_pred CCcccccccCCCCeeeccCCceeee-eceEEEEEEEeceeec
Q 017792 194 VRAKLSTFGFGGPTEVTCGGNALKF-YASVRLNIKRIGLVKK 234 (366)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~gG~~l~~-~ad~~i~l~~~~~~~~ 234 (366)
..+. +.. +||+++.|.++.+...
T Consensus 163 ~~~~------------------~~~~~~d~i~~l~~G~i~~~ 186 (200)
T cd03217 163 YQRL------------------LDYIKPDRVHVLYDGRIVKS 186 (200)
T ss_pred CHHH------------------HHHhhCCEEEEEECCEEEEE
Confidence 7653 445 6899988887654443
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-12 Score=122.06 Aligned_cols=153 Identities=20% Similarity=0.237 Sum_probs=97.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcce-ecCCCCHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLL-LAQPDCGEQALSLV-- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~-- 128 (366)
+++|++++|.||||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+.. ++...++.+.+.+.
T Consensus 32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~ 110 (269)
T PRK13648 32 IPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE-IFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLE 110 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHH
Confidence 6799999999999999999999999998887786 6777764322 345667899998863 34444444333221
Q ss_pred -------------HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HH
Q 017792 129 -------------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LR 175 (366)
Q Consensus 129 -------------~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~ 175 (366)
..++.... ++...... ...+++ |++++...||++... +.
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LS~--G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~ 182 (269)
T PRK13648 111 NHAVPYDEMHRRVSEALKQVD-----MLERADYE-PNALSG--GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLL 182 (269)
T ss_pred hcCCCHHHHHHHHHHHHHHcC-----CchhhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 11111111 11111111 123443 788888888877643 55
Q ss_pred HHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 176 KLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 176 ~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
++...+.+ .++|||+++|.... +.. ||+++.|.++.+...+
T Consensus 183 ~~L~~~~~~~~~tiiivtH~~~~------------------~~~-~d~i~~l~~G~i~~~g 224 (269)
T PRK13648 183 DLVRKVKSEHNITIISITHDLSE------------------AME-ADHVIVMNKGTVYKEG 224 (269)
T ss_pred HHHHHHHHhcCCEEEEEecCchH------------------Hhc-CCEEEEEECCEEEEec
Confidence 55555444 48999999997653 333 8999999877654443
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.2e-13 Score=124.27 Aligned_cols=160 Identities=20% Similarity=0.247 Sum_probs=100.9
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC----C-HHHHhhcccccCcce-ecCCCCHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----D-PSLAETIGVKTENLL-LAQPDCGEQALSL 127 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~-~~~~~~~e~~l~~ 127 (366)
-+.+|++++|+|+||||||||++.+++.+.+..|. ++++++... . ..+.+.+++.+|+.. ...+.++.+.+.+
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~ 102 (275)
T PRK13639 24 KAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGE-VLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAF 102 (275)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccE-EEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHH
Confidence 37799999999999999999999999988887787 566665432 1 235677999999862 2223466665543
Q ss_pred HHHHHhc----------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~~----------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
....... .-.+.+-+....... ..++++ |++|+...||+++.. +..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LS~--Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~ 179 (275)
T PRK13639 103 GPLNLGLSKEEVEKRVKEALKAVGMEGFENKP-PHHLSG--GQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKL 179 (275)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCchhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 2110000 000111111111111 233444 777777777777654 5555
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
...+.+.+.|||+++|..+. +..+||+++.|.++.++..+
T Consensus 180 l~~l~~~~~til~vtH~~~~------------------~~~~~d~i~~l~~G~i~~~g 219 (275)
T PRK13639 180 LYDLNKEGITIIISTHDVDL------------------VPVYADKVYVMSDGKIIKEG 219 (275)
T ss_pred HHHHHHCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEEeC
Confidence 55555569999999997664 45578999999877655443
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.9e-13 Score=121.12 Aligned_cols=162 Identities=17% Similarity=0.160 Sum_probs=105.0
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CHHHHhhcc--cccCcceecCCCCHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIG--VKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~~~~~~ig--~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
-+.+|++++|+||||+|||||.+.+.+.+.+.+|. +++.+++.. .+....+.| -.+|++.+++..|+-+++....
T Consensus 26 ~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~-v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~ 104 (250)
T COG0411 26 EVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGT-VIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGA 104 (250)
T ss_pred EEcCCeEEEEECCCCCCceeeeeeecccccCCCce-EEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHh
Confidence 47899999999999999999999999999999897 455655432 233333444 4688888888888776654431
Q ss_pred HHH-------hc---------------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------
Q 017792 130 TLI-------RS---------------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------- 173 (366)
Q Consensus 130 ~~~-------~~---------------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------- 173 (366)
... .. .-...+-++...... ...++. |++.+...||+|+..
T Consensus 105 ~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~-A~~Lsy--G~qR~LEIArALa~~P~lLLLDEPaAGln 181 (250)
T COG0411 105 HARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRP-AGNLSY--GQQRRLEIARALATQPKLLLLDEPAAGLN 181 (250)
T ss_pred hhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcch-hhcCCh--hHhHHHHHHHHHhcCCCEEEecCccCCCC
Confidence 100 00 000111111111111 122222 555555566665443
Q ss_pred ------HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCcc
Q 017792 174 ------LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEE 237 (366)
Q Consensus 174 ------L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~ 237 (366)
+..+...+++ .|+||++|.|.++- +..+||+++.|..++.+.+|++
T Consensus 182 ~~e~~~l~~~i~~i~~~~g~tillIEHdM~~------------------Vm~l~dri~Vl~~G~~IAeG~P 234 (250)
T COG0411 182 PEETEELAELIRELRDRGGVTILLIEHDMKL------------------VMGLADRIVVLNYGEVIAEGTP 234 (250)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEEeccHH------------------HhhhccEEEeccCCcCcccCCH
Confidence 5555555555 67999999997764 6678999999999998888865
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.3e-13 Score=123.58 Aligned_cols=159 Identities=10% Similarity=0.063 Sum_probs=99.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC----C-HHHHhhcccccCccee-cCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLL-AQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~-~~~~~~e~~l~~~ 128 (366)
+++|++++|+|+||||||||++.+++.+.+..|. +++++.... . ..+.+.+++.+|+... ....++.+.+...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~ 102 (271)
T PRK13638 24 FSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGA-VLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFS 102 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccE-EEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHH
Confidence 6799999999999999999999999988888887 566665431 1 2345679999987642 2233455444321
Q ss_pred HHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 DTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
....... -...+-++...... ...+++ |++|+...||+++.. +..+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l 179 (271)
T PRK13638 103 LRNLGVPEAEITRRVDEALTLVDAQHFRHQP-IQCLSH--GQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAII 179 (271)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCHhHhcCC-chhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 1100000 00011111111111 234444 888888888887654 55555
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
..+.+.+.|||+++|.... +..+||+++.|.++.++..+
T Consensus 180 ~~~~~~g~tii~vtH~~~~------------------~~~~~d~i~~l~~G~i~~~g 218 (271)
T PRK13638 180 RRIVAQGNHVIISSHDIDL------------------IYEISDAVYVLRQGQILTHG 218 (271)
T ss_pred HHHHHCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEeC
Confidence 5555568999999997654 45678999999877654433
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-12 Score=120.06 Aligned_cols=157 Identities=15% Similarity=0.177 Sum_probs=99.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
|++|++++|+|+||||||||++.+++.+.+ ..|. ++++++... + ..+.+.+++.+|+..++. .++.+.
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 119 (267)
T PRK14235 42 IPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGK-ITLDGEDIYDPRLDVVELRARVGMVFQKPNPFP-KSIYEN 119 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceE-EEECCEECcccccchHHHhhceEEEecCCCCCC-CcHHHH
Confidence 779999999999999999999999998864 5666 667765432 1 234567899999876665 377776
Q ss_pred HHHHHHHHh----cCC--------ceEEEEec-ccccC--CCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 125 LSLVDTLIR----SGS--------VDVVVVDS-VAALV--PKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 125 l~~~~~~~~----~~~--------~~lvviDs-l~~l~--~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
+.+...... ... ...+-++. +.... +...+++ |++|+...+|+++..
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg--Gq~qrv~laral~~~p~lllLDEPt~~LD~~ 197 (267)
T PRK14235 120 VAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSG--GQQQRLCIARAIAVSPEVILMDEPCSALDPI 197 (267)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCH--HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHH
Confidence 653221100 000 00000110 00011 1233444 888888888887643
Q ss_pred ----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+.+ +.|||+++|..+. +..+||+++.|.++.+...
T Consensus 198 ~~~~l~~~L~~l~~-~~tiiivtH~~~~------------------~~~~~d~v~~l~~G~i~~~ 243 (267)
T PRK14235 198 ATAKVEELIDELRQ-NYTIVIVTHSMQQ------------------AARVSQRTAFFHLGNLVEV 243 (267)
T ss_pred HHHHHHHHHHHHhc-CCeEEEEEcCHHH------------------HHhhCCEEEEEECCEEEEe
Confidence 5555555544 6899999997654 5567899988887655443
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-12 Score=123.07 Aligned_cols=159 Identities=16% Similarity=0.134 Sum_probs=100.6
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC---CeEEEEeCCCCCC---HHHHhhcccccCcce-ecCCCCHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG---GYCVFIDAEHALD---PSLAETIGVKTENLL-LAQPDCGEQALS 126 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g---g~vl~id~e~~~~---~~~~~~ig~~~~~~~-~~~~~~~e~~l~ 126 (366)
-+++|++++|+|+||||||||++.+++.+.+.. |. ++++++.... ..+...+|+.+|+.. .+...++.+.+.
T Consensus 29 ~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~-i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~ 107 (282)
T PRK13640 29 SIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSK-ITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVA 107 (282)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcE-EEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHH
Confidence 377999999999999999999999999987765 54 6777765432 244567899998863 344567766654
Q ss_pred HHHHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 127 LVDTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 127 ~~~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
+........ -...+-+....... ...+++ |++++...+|+++.. +..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LS~--G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~ 184 (282)
T PRK13640 108 FGLENRAVPRPEMIKIVRDVLADVGMLDYIDSE-PANLSG--GQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILK 184 (282)
T ss_pred hhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 321110000 00011111111111 133443 788888888877654 555
Q ss_pred HHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 177 LSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 177 L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+...+.+ .|+|||+++|..+. +. .||+++.|.++.++..+
T Consensus 185 ~l~~l~~~~g~tvli~tH~~~~------------------~~-~~d~i~~l~~G~i~~~g 225 (282)
T PRK13640 185 LIRKLKKKNNLTVISITHDIDE------------------AN-MADQVLVLDDGKLLAQG 225 (282)
T ss_pred HHHHHHHhcCCEEEEEecCHHH------------------HH-hCCEEEEEECCEEEEeC
Confidence 5555444 58999999997654 43 58999999877654443
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-12 Score=119.83 Aligned_cols=161 Identities=21% Similarity=0.255 Sum_probs=104.1
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCCC--H-----HHHhhcccccCcceec-CC-C
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD--P-----SLAETIGVKTENLLLA-QP-D 119 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~~--~-----~~~~~ig~~~~~~~~~-~~-~ 119 (366)
-+.+|++++|+|++||||||+++.+++.+.. .+|. +++++++.+. . .+.+.+++.+|++.-. +| .
T Consensus 27 ~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~-i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~ 105 (316)
T COG0444 27 ELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGE-ILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVM 105 (316)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeE-EEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChh
Confidence 3779999999999999999999999999973 2454 5666665433 2 2345789999986422 22 2
Q ss_pred CH-HHHHHHHHHHHhc-----------CCceEEEEec---ccccCCCCccCCccchhhHHHHHHHHHHH-----------
Q 017792 120 CG-EQALSLVDTLIRS-----------GSVDVVVVDS---VAALVPKGELDGEMGDAHMAMQARLMSQA----------- 173 (366)
Q Consensus 120 ~~-e~~l~~~~~~~~~-----------~~~~lvviDs---l~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------- 173 (366)
++ +++.+.+...... .-...|-++. +...+| .+++| |..|+.++|-+++..
T Consensus 106 ~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP-helSG--GMrQRV~IAmala~~P~LlIADEPTT 182 (316)
T COG0444 106 TIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP-HELSG--GMRQRVMIAMALALNPKLLIADEPTT 182 (316)
T ss_pred hHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC-cccCC--cHHHHHHHHHHHhCCCCEEEeCCCcc
Confidence 22 2333332211000 0012222332 344553 66776 888888888776543
Q ss_pred ---------HHHHHHHh-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 ---------LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 ---------L~~L~~~l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.+|.+.+ ++.|+++|+|||.... +..+||++..|..++++..++
T Consensus 183 ALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v------------------va~~aDri~VMYaG~iVE~g~ 237 (316)
T COG0444 183 ALDVTVQAQILDLLKELQREKGTALILITHDLGV------------------VAEIADRVAVMYAGRIVEEGP 237 (316)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhcceEEEEECcEEEEeCC
Confidence 33334444 3589999999997653 677899999999988877765
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-12 Score=132.07 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=101.1
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CH-HH-HhhcccccCcceecCCCCHHHHHHHH-
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP-SL-AETIGVKTENLLLAQPDCGEQALSLV- 128 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~-~~-~~~ig~~~~~~~~~~~~~~e~~l~~~- 128 (366)
-+++|++++|+||||||||||++.+++.+.+..|. +++++.... .. .+ ...+++.+|+..++...++.+.+.+.
T Consensus 33 ~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 111 (510)
T PRK15439 33 TLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGT-LEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGL 111 (510)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccc
Confidence 37799999999999999999999999988887786 566654332 22 22 24589999988777777887765431
Q ss_pred ----------HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 ----------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ----------~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
..++.... ++...... ...+++ |++|+...||+++.. +..+.
T Consensus 112 ~~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LSg--G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l 183 (510)
T PRK15439 112 PKRQASMQKMKQLLAALG-----CQLDLDSS-AGSLEV--ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRI 183 (510)
T ss_pred ccchHHHHHHHHHHHHcC-----CCccccCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 11111111 11111111 234544 888888888887654 55555
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+.+.+.|.|||+++|..+. +..+||+++.|+++.++.
T Consensus 184 ~~~~~~g~tiiivtHd~~~------------------~~~~~d~i~~l~~G~i~~ 220 (510)
T PRK15439 184 RELLAQGVGIVFISHKLPE------------------IRQLADRISVMRDGTIAL 220 (510)
T ss_pred HHHHHCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 5555679999999998765 344567777776665544
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-12 Score=117.89 Aligned_cols=139 Identities=18% Similarity=0.203 Sum_probs=89.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H-H---H-HhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-S---L-AETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~-~---~-~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++.+.+..|. ++++++.... . . + .+.+++.+|+..++...++.+.+.+
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 110 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGD-VIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAM 110 (233)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHH
Confidence 6799999999999999999999999988877776 5677654322 1 1 2 2569999999877777788777654
Q ss_pred HHHHHh-------c---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIR-------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~-------~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
...... . .-...+-++....-. ...+++ |++|+...+|+++.. +.++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LSg--G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 187 (233)
T PRK11629 111 PLLIGKKKPAEINSRALEMLAAVGLEHRANHR-PSELSG--GERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQL 187 (233)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 211100 0 000111111111111 133444 788888888877653 5555
Q ss_pred HHHhhh-cCcEEEEEecCCcc
Q 017792 178 SHSLSL-SQTILIFINQVRAK 197 (366)
Q Consensus 178 ~~~l~~-~~~tVI~i~h~~~~ 197 (366)
...+++ .|+|||+++|..+.
T Consensus 188 l~~~~~~~g~tvii~sH~~~~ 208 (233)
T PRK11629 188 LGELNRLQGTAFLVVTHDLQL 208 (233)
T ss_pred HHHHHHhCCCEEEEEeCCHHH
Confidence 555543 58999999997764
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-12 Score=116.67 Aligned_cols=149 Identities=19% Similarity=0.208 Sum_probs=94.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceec--CCCCHHHHHHHH----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLA--QPDCGEQALSLV---- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~--~~~~~e~~l~~~---- 128 (366)
+.+|++++|+|+||||||||++.+++...+.+|. ++++++... ...+.++|.+|+..+. .+.++.+.+...
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGT-VKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH 79 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence 6799999999999999999999999988888887 567765432 2345689988876542 224555543221
Q ss_pred ---------------HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 129 ---------------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 129 ---------------~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
..++.... ++...... ...+++ |++|+...+|++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVG-----LTELADRP-VGELSG--GQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhC-----CchhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 11111111 11111111 123433 777777777776653
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+.++...+++.+.|||+++|.... +..+||+++.+ +++++.
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~~------------------~~~~~d~i~~l-~G~i~~ 192 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLAQ------------------AMATCDRVVLL-NGRVIA 192 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHH------------------HHHhCCEEEEE-CCEEEe
Confidence 555565555569999999997664 55567888777 455443
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-12 Score=117.95 Aligned_cols=153 Identities=18% Similarity=0.211 Sum_probs=96.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H-H----HHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-S----LAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~-~----~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|+|+||||||||++.+++.+.+..|. +++++..... . . +.+.+++.+|+..++...++.+.+..
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~ 111 (228)
T PRK10584 33 VKRGETIALIGESGSGKSTLLAILAGLDDGSSGE-VSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVEL 111 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCee-EEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHH
Confidence 6799999999999999999999999988888887 5666653321 1 1 13468999998877776677766543
Q ss_pred HHHHHh-------c---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIR-------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~-------~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
...... . .-...+-++...... ...+++ |++|+...+|+++.. +..+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 188 (228)
T PRK10584 112 PALLRGESSRQSRNGAKALLEQLGLGKRLDHL-PAQLSG--GEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL 188 (228)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 211000 0 000111111111111 133443 788888888877654 5555
Q ss_pred HHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEec
Q 017792 178 SHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 230 (366)
Q Consensus 178 ~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~ 230 (366)
...+. +.+.|||+++|.... +.. ||+++.|.++.
T Consensus 189 l~~~~~~~~~tii~~sH~~~~------------------~~~-~d~i~~l~~g~ 223 (228)
T PRK10584 189 LFSLNREHGTTLILVTHDLQL------------------AAR-CDRRLRLVNGQ 223 (228)
T ss_pred HHHHHHhcCCEEEEEecCHHH------------------HHh-CCEEEEEECCE
Confidence 54443 458999999997653 333 78888887654
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-12 Score=118.31 Aligned_cols=156 Identities=22% Similarity=0.306 Sum_probs=99.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLVD-- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-- 129 (366)
+++|++++|+|+||||||||++.+++.+.+..|. ++++++... + ..+.+.+++.+|+..++. .++.+.+....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~ 102 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR-VLVDGHDLALADPAWLRRQVGVVLQENVLFN-RSIRDNIALADPG 102 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE-EEECCeehHhcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCCC
Confidence 6799999999999999999999999999888887 556665321 1 234567899999876653 46666554311
Q ss_pred -------HHHhcCCc-eE---E--EEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 130 -------TLIRSGSV-DV---V--VVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 130 -------~~~~~~~~-~l---v--viDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
........ .+ + -++....- +...+++ |++|+...+|+++.. +.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~LSg--G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~ 179 (237)
T cd03252 103 MSMERVIEAAKLAGAHDFISELPEGYDTIVGE-QGAGLSG--GQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMR 179 (237)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCcccccchhhc-CCCcCCH--HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHH
Confidence 00000000 00 0 00111001 1234444 888888888887754 555
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+...+.+ ++|||+++|..+. +. .||.++.|.++.+...+
T Consensus 180 ~l~~~~~-~~tiii~sH~~~~------------------~~-~~d~v~~l~~G~i~~~~ 218 (237)
T cd03252 180 NMHDICA-GRTVIIIAHRLST------------------VK-NADRIIVMEKGRIVEQG 218 (237)
T ss_pred HHHHhcC-CCEEEEEeCCHHH------------------HH-hCCEEEEEECCEEEEEc
Confidence 5555543 8999999997654 43 48888888877654433
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-12 Score=131.94 Aligned_cols=157 Identities=17% Similarity=0.179 Sum_probs=101.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H-H-HHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-S-LAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~-~-~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+.+|++++|+||||||||||++.+++.+.+..|. +++++..... . . +.+.+++.+|+..++...++.+.+.+...
T Consensus 27 i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 105 (501)
T PRK10762 27 VYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGS-ILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGRE 105 (501)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccc
Confidence 6799999999999999999999999998888887 5666544321 1 2 24568999998877777777776643211
Q ss_pred HHh---cC-----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 131 LIR---SG-----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 131 ~~~---~~-----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
... .. -...+-+.....- +...+++ |++|+...||+++.. +.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 182 (501)
T PRK10762 106 FVNRFGRIDWKKMYAEADKLLARLNLRFSSDK-LVGELSI--GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFR 182 (501)
T ss_pred cccccCccCHHHHHHHHHHHHHHcCCCCCccC-chhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHH
Confidence 000 00 0000111111111 1234444 888888888887654 555
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+...+++.+.|||+++|..+. +..+||+++.|+++.++.
T Consensus 183 ~l~~l~~~~~tvii~sHd~~~------------------~~~~~d~i~~l~~G~i~~ 221 (501)
T PRK10762 183 VIRELKSQGRGIVYISHRLKE------------------IFEICDDVTVFRDGQFIA 221 (501)
T ss_pred HHHHHHHCCCEEEEEeCCHHH------------------HHHhCCEEEEEeCCEEEE
Confidence 666666679999999998765 455677777777765543
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-12 Score=121.99 Aligned_cols=159 Identities=16% Similarity=0.175 Sum_probs=100.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC----C-HHHHhhcccccCcce-ecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----D-PSLAETIGVKTENLL-LAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~ 128 (366)
|++|++++|+|+||||||||++.+++.+.+..|. +++++.... . ..+...+||.+|+.. ...+.++.+.+...
T Consensus 29 i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~-i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~ 107 (283)
T PRK13636 29 IKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGR-ILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFG 107 (283)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccE-EEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhH
Confidence 6799999999999999999999999998888887 567765432 1 245677999999863 22334666655432
Q ss_pred HHHHh--c--------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 DTLIR--S--------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ~~~~~--~--------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
..... . .-...+-+.....-. ...+++ |++|+...||+++.. +..+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LS~--G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l 184 (283)
T PRK13636 108 AVNLKLPEDEVRKRVDNALKRTGIEHLKDKP-THCLSF--GQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLL 184 (283)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCChhhhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 11000 0 000011111111111 233443 777877888877654 44545
Q ss_pred HHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 179 HSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 179 ~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
..+.+ .|.|||+++|..+. +..+||+++.|.++.++..+
T Consensus 185 ~~l~~~~g~tillvsH~~~~------------------~~~~~dri~~l~~G~i~~~g 224 (283)
T PRK13636 185 VEMQKELGLTIIIATHDIDI------------------VPLYCDNVFVMKEGRVILQG 224 (283)
T ss_pred HHHHHhCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEEeC
Confidence 44444 48999999997765 55679999999887665544
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-12 Score=122.26 Aligned_cols=159 Identities=19% Similarity=0.176 Sum_probs=99.5
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCcce-ecCCCCHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLL-LAQPDCGEQALSLV 128 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~ 128 (366)
-|++|++++|+|+||||||||++.+++.+.+..|. +++++..... ..+.+.+|+.+|++. .....++.+.+.+.
T Consensus 32 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~-i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~ 110 (280)
T PRK13633 32 EVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGK-VYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFG 110 (280)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhh
Confidence 37799999999999999999999999998888786 6677665432 234667999998763 12234555554332
Q ss_pred HHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 DTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
....... -...+-+.....-. ...+++ |++|+...||+++.. +..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l 187 (280)
T PRK13633 111 PENLGIPPEEIRERVDESLKKVGMYEYRRHA-PHLLSG--GQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTI 187 (280)
T ss_pred HhhcCCCHHHHHHHHHHHHHHCCCHhHhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 1100000 00000011111111 234444 778888888877654 55555
Q ss_pred HHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 179 HSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 179 ~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
..+.+ .++|||+++|..+. +.. ||+++.|.++.++..+
T Consensus 188 ~~l~~~~g~tillvtH~~~~------------------~~~-~d~v~~l~~G~i~~~g 226 (280)
T PRK13633 188 KELNKKYGITIILITHYMEE------------------AVE-ADRIIVMDSGKVVMEG 226 (280)
T ss_pred HHHHHhcCCEEEEEecChHH------------------Hhc-CCEEEEEECCEEEEec
Confidence 55544 59999999997764 444 8999999877655444
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-12 Score=128.69 Aligned_cols=154 Identities=19% Similarity=0.229 Sum_probs=102.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc----CCeEEEEeCCCCCC-------HHHHhhcccccCcce-ecCC-CCH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ----GGYCVFIDAEHALD-------PSLAETIGVKTENLL-LAQP-DCG 121 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~----gg~vl~id~e~~~~-------~~~~~~ig~~~~~~~-~~~~-~~~ 121 (366)
+.+|++++|+|++||||||+++.+++.+... +|.+ ++++.+... ..+.+++++.+|++. .++| .++
T Consensus 32 v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I-~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tI 110 (539)
T COG1123 32 VEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEV-ILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTI 110 (539)
T ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEE-EECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhH
Confidence 6699999999999999999999999998876 5664 445543221 124567899999864 2333 333
Q ss_pred HHH----------------HHHHHHHHhcCCceEEEEeccc--ccCCCCccCCccchhhHHHHHHHHHHH----------
Q 017792 122 EQA----------------LSLVDTLIRSGSVDVVVVDSVA--ALVPKGELDGEMGDAHMAMQARLMSQA---------- 173 (366)
Q Consensus 122 e~~----------------l~~~~~~~~~~~~~lvviDsl~--~l~~~~~l~~~~g~~~~~~~ar~l~~~---------- 173 (366)
.+. ...+.++++. +-+..-. ..+| .+++| |++|+.+.|++++..
T Consensus 111 g~Qi~E~~~~h~~~~~~ea~~~a~elL~~-----Vgl~~~~~~~~yP-heLSG--G~rQRv~iAmALa~~P~LLIaDEPT 182 (539)
T COG1123 111 GDQIREALRLHGKGSRAEARKRAVELLEQ-----VGLPDPERRDRYP-HQLSG--GMRQRVMIAMALALKPKLLIADEPT 182 (539)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH-----cCCCChhhhccCC-cccCc--hHHHHHHHHHHHhCCCCEEEECCCc
Confidence 222 2222222221 1111111 2343 66777 899999999887764
Q ss_pred ----------HHHHHHHh-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 ----------LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 ----------L~~L~~~l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+..+.+.+ ++.|+++|+|||.... ++++||+++.|++++++..|
T Consensus 183 TaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~V------------------va~~aDrv~Vm~~G~iVE~G 237 (539)
T COG1123 183 TALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV------------------VAELADRVVVMYKGEIVETG 237 (539)
T ss_pred cccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHH------------------HHHhcCeEEEEECCEEEEec
Confidence 33333333 5789999999997654 78899999999999877755
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.1e-12 Score=118.04 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=99.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++...+ ..|. ++++++... . ..+.+.+++.+|+..++.. ++.+.
T Consensus 35 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~en 112 (259)
T PRK14274 35 IPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGE-MNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDN 112 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceE-EEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHH
Confidence 779999999999999999999999998762 3565 566765432 1 2445679999998776653 77666
Q ss_pred HHHHHHHHhcCC-----------ceEEEEec-ccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSGS-----------VDVVVVDS-VAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~~-----------~~lvviDs-l~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+.+......... ...+-++. +.... +...+++ |++|+...+|++...
T Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~--Gq~qrv~laral~~~p~llllDEPt~~LD~~~ 190 (259)
T PRK14274 113 VAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSG--GQQQRLCIARALATNPDVLLMDEPTSALDPVS 190 (259)
T ss_pred HHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 543221110000 00000100 00011 1233443 888888888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.++...+++ +.|||+++|.... +..+||+++.|+++++...+
T Consensus 191 ~~~l~~~l~~~~~-~~tiiivtH~~~~------------------~~~~~d~i~~l~~G~i~~~g 236 (259)
T PRK14274 191 TRKIEELILKLKE-KYTIVIVTHNMQQ------------------AARVSDQTAFFYMGELVECN 236 (259)
T ss_pred HHHHHHHHHHHhc-CCEEEEEEcCHHH------------------HHHhCCEEEEEECCEEEEEC
Confidence 5555555544 7899999997654 55678999999877654443
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-12 Score=117.12 Aligned_cols=155 Identities=18% Similarity=0.274 Sum_probs=98.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHHHH-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLVDT- 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~- 130 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++... . ..+.+.+++.+|+..++. .++.+.+.....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~ 102 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGR-ILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG 102 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccCCCCE-EEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC
Confidence 6799999999999999999999999998888887 566665332 1 345667899998876654 466655432100
Q ss_pred ----HHhcCCceEEEEec--------ccccC--CCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 131 ----LIRSGSVDVVVVDS--------VAALV--PKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 131 ----~~~~~~~~lvviDs--------l~~l~--~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
.+.. ......++. +.... +...+++ |++|+...||+++.. +.+
T Consensus 103 ~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~--G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~ 179 (234)
T cd03251 103 ATREEVEE-AARAANAHEFIMELPEGYDTVIGERGVKLSG--GQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179 (234)
T ss_pred CCHHHHHH-HHHHcCcHHHHHhcccCcceeeccCCCcCCH--HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 0000 000000011 11111 1233444 888888888887764 555
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+...+.+ +.+||+++|.... +.. ||.++.|+++.+...
T Consensus 180 ~l~~~~~-~~tii~~sh~~~~------------------~~~-~d~v~~l~~G~i~~~ 217 (234)
T cd03251 180 ALERLMK-NRTTFVIAHRLST------------------IEN-ADRIVVLEDGKIVER 217 (234)
T ss_pred HHHHhcC-CCEEEEEecCHHH------------------Hhh-CCEEEEecCCeEeee
Confidence 5555543 8999999997754 433 899999987765433
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.2e-12 Score=115.57 Aligned_cols=149 Identities=15% Similarity=0.210 Sum_probs=95.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++... + ..+...+++.+|+..++. .++.+.+......
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~ 107 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVASLISPTSGT-LLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQI 107 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCe-EEECCEEcCcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhh
Confidence 7799999999999999999999999988887887 566665322 1 235567899999877664 4777765432111
Q ss_pred HhcC--------CceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 132 IRSG--------SVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 132 ~~~~--------~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
.... -.+.+-++ .+.... ...+++ |++++...+|+++.. +..+...+.
T Consensus 108 ~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 184 (225)
T PRK10247 108 RNQQPDPAIFLDDLERFALPDTILTKN-IAELSG--GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYV 184 (225)
T ss_pred cCCChHHHHHHHHHHHcCCChHHhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 0000 00011111 011111 233443 788888888887654 445444443
Q ss_pred -hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEE
Q 017792 183 -LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIK 227 (366)
Q Consensus 183 -~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~ 227 (366)
+.+.|||+++|..+. +. .||+++.|+
T Consensus 185 ~~~~~tvii~sh~~~~------------------~~-~~d~i~~l~ 211 (225)
T PRK10247 185 REQNIAVLWVTHDKDE------------------IN-HADKVITLQ 211 (225)
T ss_pred HhcCCEEEEEECChHH------------------HH-hCCEEEEEe
Confidence 358999999997654 44 489888885
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-12 Score=120.62 Aligned_cols=157 Identities=20% Similarity=0.160 Sum_probs=97.0
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcce--ecCCCCHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLL--LAQPDCGEQALSLV 128 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~--~~~~~~~e~~l~~~ 128 (366)
-+++|++++|+||||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+.. +....++.+.+...
T Consensus 35 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 113 (267)
T PRK15112 35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGE-LLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFP 113 (267)
T ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCE-EEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHH
Confidence 37799999999999999999999999998888887 4566544321 233456899998763 33334555544321
Q ss_pred HHHHhc-C----------CceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 129 DTLIRS-G----------SVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 129 ~~~~~~-~----------~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
...... . -...+-++ ...... ...+++ |++|+...||+++.. +..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS~--G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 190 (267)
T PRK15112 114 LRLNTDLEPEQREKQIIETLRQVGLLPDHASYY-PHMLAP--GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLIN 190 (267)
T ss_pred HHhccCCCHHHHHHHHHHHHHHcCCChHHHhcC-chhcCH--HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHH
Confidence 110000 0 00011111 111111 133443 788888888887654 555
Q ss_pred HHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 177 LSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 177 L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
+...+.+ .+.|||+++|..+. +..+||+++.|.++.+.
T Consensus 191 ~l~~~~~~~g~tviivsH~~~~------------------~~~~~d~i~~l~~G~i~ 229 (267)
T PRK15112 191 LMLELQEKQGISYIYVTQHLGM------------------MKHISDQVLVMHQGEVV 229 (267)
T ss_pred HHHHHHHHcCcEEEEEeCCHHH------------------HHHhcCEEEEEECCEEE
Confidence 5554444 58999999997654 55678999888876543
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3e-12 Score=108.57 Aligned_cols=149 Identities=20% Similarity=0.251 Sum_probs=100.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC--CC-----HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LD-----PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~--~~-----~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+.+|+.+.|+||+|||||||+..++++-.+.+|.|. +.+... .+ ..+.+++|+++|.+.+.+..+..+++..
T Consensus 33 v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~-l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~l 111 (228)
T COG4181 33 VKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVR-LLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVAL 111 (228)
T ss_pred ecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEE-EcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccc
Confidence 679999999999999999998888888788888754 444332 22 2456789999999999888776665432
Q ss_pred ---------------HHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 128 ---------------VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 128 ---------------~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
...++..-. +-.-...+| .++++ |++|+..+||+++..
T Consensus 112 PleL~ge~~~~~~~~A~~lL~~vG-----Lg~Rl~HyP-~qLSG--GEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~ 183 (228)
T COG4181 112 PLELRGESSADSRAGAKALLEAVG-----LGKRLTHYP-AQLSG--GEQQRVALARAFAGRPDVLFADEPTGNLDRATGD 183 (228)
T ss_pred hhhhcCCccccHHHHHHHHHHHhC-----cccccccCc-cccCc--hHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHH
Confidence 111111100 111112232 45665 889999999887543
Q ss_pred --HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 174 --LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 174 --L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
..-|....++.|.|+|+++|... ++.-|++++.|+.+++
T Consensus 184 ~iaDLlF~lnre~G~TlVlVTHD~~-------------------LA~Rc~R~~r~~~G~l 224 (228)
T COG4181 184 KIADLLFALNRERGTTLVLVTHDPQ-------------------LAARCDRQLRLRSGRL 224 (228)
T ss_pred HHHHHHHHHhhhcCceEEEEeCCHH-------------------HHHhhhheeeeeccee
Confidence 12222333678999999999543 6667899999987754
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-12 Score=120.56 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=98.9
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcce-ecCCCCHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLL-LAQPDCGEQALSLVD 129 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~~ 129 (366)
-+++|++++|+||||||||||++.+++...+..|. +++++..... ..+.+.++|.+|+.. .+...++.+.+....
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~ 109 (271)
T PRK13632 31 EINEGEYVAILGHNGSGKSTISKILTGLLKPQSGE-IKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGL 109 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHH
Confidence 47799999999999999999999999998887786 5666654322 245667899998863 344457766654321
Q ss_pred HHHhcC--C--------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHH
Q 017792 130 TLIRSG--S--------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSH 179 (366)
Q Consensus 130 ~~~~~~--~--------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~ 179 (366)
...... . ...+-++....-. ...+++ |++|+...+|+++.. +..+..
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~ 186 (271)
T PRK13632 110 ENKKVPPKKMKDIIDDLAKKVGMEDYLDKE-PQNLSG--GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMV 186 (271)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 110000 0 0111111111111 133444 788888888877654 445555
Q ss_pred Hhhhc-CcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 180 SLSLS-QTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 180 ~l~~~-~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
.+++. +.|||+++|..+. +. .||+++.|.++.+..
T Consensus 187 ~~~~~~~~tiii~sH~~~~------------------~~-~~d~v~~l~~G~i~~ 222 (271)
T PRK13632 187 DLRKTRKKTLISITHDMDE------------------AI-LADKVIVFSEGKLIA 222 (271)
T ss_pred HHHHhcCcEEEEEEechhH------------------Hh-hCCEEEEEECCEEEE
Confidence 54444 5999999997653 33 589998888775443
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-12 Score=117.88 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=98.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh--h---cCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ--R---QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~--~---~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
|++|++++|+|+||||||||++.+++.+. + ..|. +++++..... ..+.+.+++.+|+..++...++.+.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~en 105 (252)
T PRK14256 27 FPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGK-ILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDN 105 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceE-EEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHH
Confidence 67999999999999999999999999875 2 3565 5677654321 2345678999998877776777766
Q ss_pred HHHHHHHHhcCC-----------ceEEEEec-ccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSGS-----------VDVVVVDS-VAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~~-----------~~lvviDs-l~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+........... .+.+-++. +.... +...+++ |++|+...||+++..
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~--G~~qrl~laral~~~p~llllDEP~~gLD~~~ 183 (252)
T PRK14256 106 VIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSG--GQQQRLCIARTIAVKPEVILMDEPASALDPIS 183 (252)
T ss_pred HHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 543211100000 00011110 00011 1233444 888888888887643
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+.++...+.+ +.|||+++|..+. +..+||+++.|..+.+..
T Consensus 184 ~~~l~~~l~~~~~-~~tiiivsH~~~~------------------~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14256 184 TLKIEELIEELKE-KYTIIIVTHNMQQ------------------AARVSDYTAFFYMGDLVE 227 (252)
T ss_pred HHHHHHHHHHHHh-CCcEEEEECCHHH------------------HHhhCCEEEEEECCEEEE
Confidence 5555555544 6899999997654 456789888888765433
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-12 Score=118.48 Aligned_cols=152 Identities=17% Similarity=0.140 Sum_probs=98.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVD-- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-- 129 (366)
+++|++++|+|+||||||||++.+++... ..|. ++++++.... ..+.+.+++.+|+..+....++.+.+....
T Consensus 19 i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~-i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~ 96 (248)
T PRK03695 19 VRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGS-IQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPD 96 (248)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeE-EEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCcc
Confidence 67999999999999999999999998764 4565 6677654322 234456889888765555556665544321
Q ss_pred ------------HHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHH-------H-----------------
Q 017792 130 ------------TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ-------A----------------- 173 (366)
Q Consensus 130 ------------~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~-------~----------------- 173 (366)
.++... -++...... ...+++ |++|+...+|+++. .
T Consensus 97 ~~~~~~~~~~~~~~l~~~-----~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~ 168 (248)
T PRK03695 97 KTRTEAVASALNEVAEAL-----GLDDKLGRS-VNQLSG--GEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQ 168 (248)
T ss_pred CCCcHHHHHHHHHHHHHc-----CCHhHhcCC-cccCCH--HHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHH
Confidence 111110 011111111 133443 78888888888873 1
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+++.+.|||+++|..+. +..+||+++.|+++.++..
T Consensus 169 ~~~l~~~L~~~~~~~~tvi~~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 214 (248)
T PRK03695 169 QAALDRLLSELCQQGIAVVMSSHDLNH------------------TLRHADRVWLLKQGKLLAS 214 (248)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEEE
Confidence 555555555568999999997764 5567899999987765443
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-12 Score=120.53 Aligned_cols=145 Identities=16% Similarity=0.227 Sum_probs=92.6
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
|=+.+|++++|+|+||||||||++.+++...+..|. +++++. .+++.+|++......++.+++.......
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~-i~~~g~---------~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 89 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGD-IEIELD---------TVSYKPQYIKADYEGTVRDLLSSITKDF 89 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCe-EEECCc---------eEEEecccccCCCCCCHHHHHHHHhhhc
Confidence 458899999999999999999999999988888786 455542 5778888776555567777654321110
Q ss_pred hcC------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-hcC
Q 017792 133 RSG------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS-LSQ 185 (366)
Q Consensus 133 ~~~------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~-~~~ 185 (366)
... -...+-++....-. ...+++ |++|+...|++++.. +..+...+. +.+
T Consensus 90 ~~~~~~~~~~l~~l~l~~~~~~~-~~~LSg--Ge~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 166 (246)
T cd03237 90 YTHPYFKTEIAKPLQIEQILDRE-VPELSG--GELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNE 166 (246)
T ss_pred cccHHHHHHHHHHcCCHHHhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 000 00011111111111 234444 778888888777654 444444443 358
Q ss_pred cEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 186 TILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 186 ~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
+|||+++|.... +..+||+++.|..
T Consensus 167 ~tiiivsHd~~~------------------~~~~~d~i~~l~~ 191 (246)
T cd03237 167 KTAFVVEHDIIM------------------IDYLADRLIVFEG 191 (246)
T ss_pred CEEEEEeCCHHH------------------HHHhCCEEEEEcC
Confidence 999999997654 5567888888754
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-12 Score=121.98 Aligned_cols=157 Identities=20% Similarity=0.146 Sum_probs=100.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcce-ecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLL-LAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~~~ 130 (366)
+.+|++++|+|+||||||||+..+++...+..|. ++++++.... ..+...+|+.+|+.. .+...++.+.+.....
T Consensus 30 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~ 108 (277)
T PRK13642 30 ITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGK-VKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGME 108 (277)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCE-EEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHH
Confidence 6799999999999999999999999999888887 5666654322 245667999999863 3444566666543211
Q ss_pred HHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHH
Q 017792 131 LIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHS 180 (366)
Q Consensus 131 ~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~ 180 (366)
..... -...+-+....... ...+++ |++|+...||+++.. +..+...
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 185 (277)
T PRK13642 109 NQGIPREEMIKRVDEALLAVNMLDFKTRE-PARLSG--GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHE 185 (277)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCHhHhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 00000 00111111111111 234444 788888888887654 5555555
Q ss_pred hhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 181 LSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 181 l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.+ .|.|||+++|.... +. .||+++.|+++.++..
T Consensus 186 l~~~~g~tiil~sH~~~~------------------~~-~~d~i~~l~~G~i~~~ 221 (277)
T PRK13642 186 IKEKYQLTVLSITHDLDE------------------AA-SSDRILVMKAGEIIKE 221 (277)
T ss_pred HHHhcCCEEEEEeCCHHH------------------HH-hCCEEEEEECCEEEEe
Confidence 544 49999999997654 33 4899999987765443
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-12 Score=123.47 Aligned_cols=160 Identities=21% Similarity=0.196 Sum_probs=101.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEeCCCCCC---HHH----HhhcccccCcc--eecCCCCHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALD---PSL----AETIGVKTENL--LLAQPDCGE 122 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~---gg~vl~id~e~~~~---~~~----~~~ig~~~~~~--~~~~~~~~e 122 (366)
|.+|++++|+|+||||||||++.+++.+.+. .|. ++++++.... ..+ .+.+++.+|+. .+.+..++.
T Consensus 39 i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~-I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~ 117 (330)
T PRK09473 39 LRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGS-ATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVG 117 (330)
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeE-EEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHH
Confidence 6799999999999999999999999988764 666 5667665432 222 24699999987 344445555
Q ss_pred HHHHHHHHHHhc-----------CCceEEEEecc---cccCCCCccCCccchhhHHHHHHHHHHH---------------
Q 017792 123 QALSLVDTLIRS-----------GSVDVVVVDSV---AALVPKGELDGEMGDAHMAMQARLMSQA--------------- 173 (366)
Q Consensus 123 ~~l~~~~~~~~~-----------~~~~lvviDsl---~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------- 173 (366)
+.+......... .-...+-++.. .... ..++++ |++|+...||+++..
T Consensus 118 ~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~-p~~LSg--G~~QRv~IArAL~~~P~llilDEPts~LD~ 194 (330)
T PRK09473 118 EQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMY-PHEFSG--GMRQRVMIAMALLCRPKLLIADEPTTALDV 194 (330)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCCccCCH
Confidence 433211100000 00111111211 1112 245555 889999999887654
Q ss_pred -----HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 -----LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 -----L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+..+...+++ .+.|+|+++|.... +..+||+++.|+.++++..+.
T Consensus 195 ~~~~~i~~lL~~l~~~~g~til~iTHdl~~------------------~~~~~Dri~vm~~G~ive~g~ 245 (330)
T PRK09473 195 TVQAQIMTLLNELKREFNTAIIMITHDLGV------------------VAGICDKVLVMYAGRTMEYGN 245 (330)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEECCHHH------------------HHHhCCEEEEEECCEEEEECC
Confidence 4455555544 59999999997654 456789999998887666553
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.3e-12 Score=118.81 Aligned_cols=158 Identities=17% Similarity=0.179 Sum_probs=98.8
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ 123 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~-----~~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~ 123 (366)
-|++|++++|+|+||||||||++.+++.+. +..|. +++++.... + ..+.+.+++.+|+..++. .++.+
T Consensus 35 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~-i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~ 112 (260)
T PRK10744 35 DIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGE-ILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYD 112 (260)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceE-EEECCEEccccccchHHHhcceEEEecCCccCc-CcHHH
Confidence 378999999999999999999999999875 24565 566665432 1 244567999999876655 57766
Q ss_pred HHHHHHHHHhcCC-----------ceEEEEe-cccccC--CCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 124 ALSLVDTLIRSGS-----------VDVVVVD-SVAALV--PKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 124 ~l~~~~~~~~~~~-----------~~lvviD-sl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
.+........... ...+-++ .+.... ....+++ |++|+...||+++..
T Consensus 113 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~--Gq~qrv~laral~~~p~lllLDEPt~~LD~~ 190 (260)
T PRK10744 113 NIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSG--GQQQRLCIARGIAIRPEVLLLDEPCSALDPI 190 (260)
T ss_pred HHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCH--HHHHHHHHHHHHHCCCCEEEEcCCCccCCHH
Confidence 6543211100000 0000000 000111 1233444 888888888887654
Q ss_pred ----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...++ .+.|||+++|.... +..+||+++.|+++.++..
T Consensus 191 ~~~~l~~~L~~~~-~~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 191 STGRIEELITELK-QDYTVVIVTHNMQQ------------------AARCSDYTAFMYLGELIEF 236 (260)
T ss_pred HHHHHHHHHHHHh-cCCeEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 445554444 37899999997654 4567899999987765443
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.8e-12 Score=110.37 Aligned_cols=124 Identities=15% Similarity=0.123 Sum_probs=79.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHH-------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSL------- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~------- 127 (366)
+++|++++|.|+||||||||++.+++.+.+..|.+ ++++. +.+++.+|+..+. ..++.+.+..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~~~--------~~i~~~~q~~~~~-~~tv~~nl~~~~~~~LS 93 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI-GMPEG--------EDLLFLPQRPYLP-LGTLREQLIYPWDDVLS 93 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCC--------ceEEEECCCCccc-cccHHHHhhccCCCCCC
Confidence 67999999999999999999999999888887874 55432 4677777776543 3455554431
Q ss_pred ---------HHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccc
Q 017792 128 ---------VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKL 198 (366)
Q Consensus 128 ---------~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~ 198 (366)
+..++ .+++++++|...+-... ...+. +..+. ++.+.|+|+++|....
T Consensus 94 ~G~~~rv~laral~--~~p~~lllDEPt~~LD~-------------~~~~~----l~~~l---~~~~~tiiivsh~~~~- 150 (166)
T cd03223 94 GGEQQRLAFARLLL--HKPKFVFLDEATSALDE-------------ESEDR----LYQLL---KELGITVISVGHRPSL- 150 (166)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEEECCccccCH-------------HHHHH----HHHHH---HHhCCEEEEEeCChhH-
Confidence 22222 35677777776655410 01111 22222 2336899999997532
Q ss_pred ccccCCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 199 STFGFGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 199 ~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
. .+||+++.|++.
T Consensus 151 -----------------~-~~~d~i~~l~~~ 163 (166)
T cd03223 151 -----------------W-KFHDRVLDLDGE 163 (166)
T ss_pred -----------------H-hhCCEEEEEcCC
Confidence 2 368888877653
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-12 Score=117.67 Aligned_cols=158 Identities=15% Similarity=0.158 Sum_probs=101.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHH-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI- 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~- 132 (366)
|.+|++++|+|+||||||||++.+++.+.+..|. +++++..... ....+.+++.+++..++...++.+.+.......
T Consensus 22 i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~-v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~ 100 (235)
T cd03299 22 VERGDYFVILGPTGSGKSVLLETIAGFIKPDSGK-ILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRK 100 (235)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceE-EEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcC
Confidence 5699999999999999999999999988887776 6677654432 123467899999887777777777665322110
Q ss_pred ------hc---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhh
Q 017792 133 ------RS---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSL 183 (366)
Q Consensus 133 ------~~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~ 183 (366)
.. .-.+.+-+.....-. ...+++ |++++...+|++... +..+...+..
T Consensus 101 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~ 177 (235)
T cd03299 101 VDKKEIERKVLEIAEMLGIDHLLNRK-PETLSG--GEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRK 177 (235)
T ss_pred CCHHHHHHHHHHHHHHcCChhHHhcC-cccCCH--HHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH
Confidence 00 000000011110101 123443 788888888877653 4444444433
Q ss_pred -cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 184 -SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 184 -~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+++|||+++|.... +..+||+++.|.++.++..
T Consensus 178 ~~~~tili~tH~~~~------------------~~~~~d~i~~l~~G~i~~~ 211 (235)
T cd03299 178 EFGVTVLHVTHDFEE------------------AWALADKVAIMLNGKLIQV 211 (235)
T ss_pred hcCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 48999999997654 5567899999987654433
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.6e-12 Score=116.84 Aligned_cols=157 Identities=16% Similarity=0.160 Sum_probs=99.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh---hcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ---RQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~---~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+.+|++++|+|+||||||||++.+++... +..|. ++++++.... ..+.+.+++.+|+..++. .++.+.+.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~-i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~ 102 (246)
T PRK14269 25 IEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGL-VEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYA 102 (246)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceE-EEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhH
Confidence 66999999999999999999999999864 35666 5677664332 244567999999877664 5777666442
Q ss_pred HHHHhc---CC---------ceEEEEec-ccccC--CCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 129 DTLIRS---GS---------VDVVVVDS-VAALV--PKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 129 ~~~~~~---~~---------~~lvviDs-l~~l~--~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
...... .. .+.+-++. +.... ....+++ |++|+...||++...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~--G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~ 180 (246)
T PRK14269 103 PKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSG--GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGV 180 (246)
T ss_pred HhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 211000 00 00000100 00011 1123443 888888888887654
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+ ++|||+++|..+. +..+||+++.|.++++...
T Consensus 181 l~~~l~~~~~-~~tiii~tH~~~~------------------~~~~~d~i~~l~~G~i~~~ 222 (246)
T PRK14269 181 IEELLKELSH-NLSMIMVTHNMQQ------------------GKRVADYTAFFHLGELIEF 222 (246)
T ss_pred HHHHHHHHhC-CCEEEEEecCHHH------------------HHhhCcEEEEEECCEEEEE
Confidence 4444544443 8999999997654 5567899999987765443
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.1e-12 Score=117.33 Aligned_cols=155 Identities=15% Similarity=0.227 Sum_probs=97.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLVD-- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-- 129 (366)
+++|++++|+|+||||||||++.+++.+.+..|. +++++.... . ..+.+.+++.+|+..++. .++.+.+....
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~ 103 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE-ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPD 103 (238)
T ss_pred ecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCE-EEECCEehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCC
Confidence 6799999999999999999999999998888887 566654322 1 234566899998876553 35555443210
Q ss_pred -------HHHhcCCce----EE--EEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 130 -------TLIRSGSVD----VV--VVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 130 -------~~~~~~~~~----lv--viDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
......... .+ -++...... ...+++ |++++...+|+++.. +.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~ 180 (238)
T cd03249 104 ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGER-GSQLSG--GQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180 (238)
T ss_pred CCHHHHHHHHHHcChHHHHHhhccccceeeccC-CccCCH--HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 000000000 00 000000011 134444 788888888877654 555
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+...+. .+++||+++|..+. +. +||+++.|.++.+...
T Consensus 181 ~l~~~~-~g~~vi~~sh~~~~------------------~~-~~d~v~~l~~G~i~~~ 218 (238)
T cd03249 181 ALDRAM-KGRTTIVIAHRLST------------------IR-NADLIAVLQNGQVVEQ 218 (238)
T ss_pred HHHHhc-CCCEEEEEeCCHHH------------------Hh-hCCEEEEEECCEEEEe
Confidence 555555 68999999997654 44 6899999988765443
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.9e-12 Score=129.77 Aligned_cols=157 Identities=13% Similarity=0.114 Sum_probs=100.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+++|++++|+|+||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+..++...++.+.+.+...
T Consensus 21 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 99 (491)
T PRK10982 21 VRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGS-ILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRY 99 (491)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceE-EEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcccc
Confidence 6799999999999999999999999988887776 5666654321 1234568999998776666777766543210
Q ss_pred HHhc-------------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 131 LIRS-------------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 131 ~~~~-------------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
.... .-...+-++...... ...+++ |++|+...||+++.. +.++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--Gq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 176 (491)
T PRK10982 100 PTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-VATLSV--SQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTI 176 (491)
T ss_pred cccccccCHHHHHHHHHHHHHHcCCCCCccCc-hhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 0000 000001111111111 234544 888888888887754 5555
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
...+++.+.|||+++|..+. +..+||+++.|+++.++.
T Consensus 177 l~~l~~~g~tvii~tH~~~~------------------~~~~~d~i~~l~~G~i~~ 214 (491)
T PRK10982 177 IRKLKERGCGIVYISHKMEE------------------IFQLCDEITILRDGQWIA 214 (491)
T ss_pred HHHHHhCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEe
Confidence 66666679999999998765 344566666666655443
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-12 Score=123.29 Aligned_cols=158 Identities=14% Similarity=0.146 Sum_probs=98.6
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC-------C-HHHHhhcccccCccee-cCCCCHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-------D-PSLAETIGVKTENLLL-AQPDCGEQA 124 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~-------~-~~~~~~ig~~~~~~~~-~~~~~~e~~ 124 (366)
-+++|++++|+|+||||||||++.+++.+.+..|. +++++.... . ..+.+.+++.+|+... ..+.++.+.
T Consensus 33 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~en 111 (289)
T PRK13645 33 TFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQ-TIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKD 111 (289)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHH
Confidence 37799999999999999999999999998888887 456654321 1 2345678999987531 123466665
Q ss_pred HHHHHHHHhcC----------CceEEEE-ecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 125 LSLVDTLIRSG----------SVDVVVV-DSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~----------~~~lvvi-Dsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
+.+........ -...+-+ +...... ...+++ |++|+...||+++..
T Consensus 112 l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~-~~~LS~--Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~ 188 (289)
T PRK13645 112 IAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRS-PFELSG--GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEED 188 (289)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHH
Confidence 54322110000 0000001 0111111 233444 888888888887754
Q ss_pred HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+.++...+.+ .++|||+++|..+. +..+||+++.|+++.++.
T Consensus 189 l~~~l~~~~~~~~~tiiiisH~~~~------------------~~~~~d~i~~l~~G~i~~ 231 (289)
T PRK13645 189 FINLFERLNKEYKKRIIMVTHNMDQ------------------VLRIADEVIVMHEGKVIS 231 (289)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 4455544443 58999999997654 556789999998765443
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.7e-12 Score=118.28 Aligned_cols=153 Identities=18% Similarity=0.232 Sum_probs=98.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcce--ecCCCCHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLL--LAQPDCGEQALS 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~--~~~~~~~e~~l~ 126 (366)
+.+|++++|+|+||||||||++.+++...+..|. +++++..... ..+.+.+++.+|+.. +....++.+.+.
T Consensus 35 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~-i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~ 113 (268)
T PRK10419 35 LKSGETVALLGRSGCGKSTLARLLVGLESPSQGN-VSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIR 113 (268)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHH
Confidence 6799999999999999999999999988887786 5666654322 134567999999863 444456655542
Q ss_pred HH----------------HHHHhcCCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 127 LV----------------DTLIRSGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 127 ~~----------------~~~~~~~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
.. ..++.... ++ .+.... ...+++ |++|+...+|+++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~g-----l~~~~~~~~-~~~LS~--Ge~qrl~laral~~~p~lllLDEPt~~LD~~ 185 (268)
T PRK10419 114 EPLRHLLSLDKAERLARASEMLRAVD-----LDDSVLDKR-PPQLSG--GQLQRVCLARALAVEPKLLILDEAVSNLDLV 185 (268)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHcC-----CChhHhhCC-CccCCh--HHHHHHHHHHHHhcCCCEEEEeCCCcccCHH
Confidence 21 11111111 11 011111 233443 888888888887654
Q ss_pred ----HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ----LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ----L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+.+ .++|||+++|.... +..+||+++.|.++.+...
T Consensus 186 ~~~~~~~~l~~~~~~~~~tiiivsH~~~~------------------i~~~~d~i~~l~~G~i~~~ 233 (268)
T PRK10419 186 LQAGVIRLLKKLQQQFGTACLFITHDLRL------------------VERFCQRVMVMDNGQIVET 233 (268)
T ss_pred HHHHHHHHHHHHHHHcCcEEEEEECCHHH------------------HHHhCCEEEEEECCEEeee
Confidence 4455544443 58999999997764 5567899999987654433
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.9e-12 Score=130.45 Aligned_cols=156 Identities=15% Similarity=0.096 Sum_probs=98.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H-H-HHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-S-LAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~-~-~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++.... . . +.+.+++.+|+..++...++.+.+.....
T Consensus 28 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 106 (510)
T PRK09700 28 VYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGT-ITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRH 106 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccE-EEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccc
Confidence 6799999999999999999999999998887787 5666554322 1 1 23468999998777666677666543110
Q ss_pred H---HhcC--------------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 131 L---IRSG--------------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 131 ~---~~~~--------------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
. .... -...+-++....- +...+++ |++|+...||+++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LSg--G~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~ 183 (510)
T PRK09700 107 LTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDE-KVANLSI--SHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDY 183 (510)
T ss_pred cccccccccccCHHHHHHHHHHHHHHcCCCCCccc-chhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Confidence 0 0000 0000001111011 1134444 888888888887654
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
+.++...+++.|.|||+++|.... +..+||+++.|+++.++
T Consensus 184 l~~~l~~l~~~g~tiiivsHd~~~------------------~~~~~d~v~~l~~G~i~ 224 (510)
T PRK09700 184 LFLIMNQLRKEGTAIVYISHKLAE------------------IRRICDRYTVMKDGSSV 224 (510)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEe
Confidence 666666666679999999998765 34456666666655443
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-12 Score=118.05 Aligned_cols=148 Identities=21% Similarity=0.216 Sum_probs=95.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
+++|++++|+||||||||||++.+++...+..|. +++++.... . ..+.+.+++.+|+..++. .++.+.+...
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~ 104 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS-VLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL 104 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCe-EEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCCC
Confidence 6799999999999999999999999988777786 566654321 1 234557899998876654 4665554321
Q ss_pred ------HHHHhcCCceEEEEecccccCC----------CCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 129 ------DTLIRSGSVDVVVVDSVAALVP----------KGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 129 ------~~~~~~~~~~lvviDsl~~l~~----------~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
..++.. +-++......+ ...+++ |++|+...+|+++..
T Consensus 105 ~~~~~~~~~l~~-----~~l~~~~~~~~~~~~~~~~~~~~~LSg--G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 177 (220)
T cd03245 105 ADDERILRAAEL-----AGVTDFVNKHPNGLDLQIGERGRGLSG--GQRQAVALARALLNDPPILLLDEPTSAMDMNSEE 177 (220)
T ss_pred CCHHHHHHHHHH-----cCcHHHHHhccccccceecCCCccCCH--HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 111111 11111111111 134544 888888888887654
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+.++...+.+ +.|||+++|..+. + .+||+++.|.++.+
T Consensus 178 ~l~~~l~~~~~-~~tii~~sH~~~~------------------~-~~~d~v~~l~~g~i 216 (220)
T cd03245 178 RLKERLRQLLG-DKTLIIITHRPSL------------------L-DLVDRIIVMDSGRI 216 (220)
T ss_pred HHHHHHHHhcC-CCEEEEEeCCHHH------------------H-HhCCEEEEEeCCeE
Confidence 5555555544 4899999997653 3 36888888876543
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.3e-12 Score=129.99 Aligned_cols=156 Identities=13% Similarity=0.209 Sum_probs=100.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CH--HHHhhcccccCcc---eecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP--SLAETIGVKTENL---LLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~--~~~~~ig~~~~~~---~~~~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++... .. .+.+.++|.+|+. .++...++.+.+..
T Consensus 286 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~-I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~ 364 (510)
T PRK09700 286 VCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGE-IRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAI 364 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCe-EEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcc
Confidence 7799999999999999999999999988887787 566654332 11 2345689999873 35555666665432
Q ss_pred HHHH----H-------hc--------CCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH--------------
Q 017792 128 VDTL----I-------RS--------GSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA-------------- 173 (366)
Q Consensus 128 ~~~~----~-------~~--------~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------- 173 (366)
.... . .. .-...+-+. ..... +...+++ |++|+...||+++..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LSg--Gq~qrv~lAral~~~p~lLlLDEPt~~LD 441 (510)
T PRK09700 365 SRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQ-NITELSG--GNQQKVLISKWLCCCPEVIIFDEPTRGID 441 (510)
T ss_pred ccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccC-ccccCCh--HHHHHHHHHHHHhcCCCEEEECCCCCCcC
Confidence 1100 0 00 000011111 11111 1234555 888888888887754
Q ss_pred ------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 174 ------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 174 ------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
+.++.+.+++.|.|||+++|.... +..+||+++.|+++++.
T Consensus 442 ~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~------------------~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 442 VGAKAEIYKVMRQLADDGKVILMVSSELPE------------------IITVCDRIAVFCEGRLT 488 (510)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHHH------------------HHhhCCEEEEEECCEEE
Confidence 666666666679999999997654 56678999988876543
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-12 Score=133.71 Aligned_cols=160 Identities=18% Similarity=0.144 Sum_probs=105.6
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CH----HHHhhcccccCcc--eecCCCCHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP----SLAETIGVKTENL--LLAQPDCGEQAL 125 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~----~~~~~ig~~~~~~--~~~~~~~~e~~l 125 (366)
-+++|++++|+|+||||||||++.+++...+..|. ++++++... .. .+.+.+++.+|+. .+....++.+.+
T Consensus 346 ~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l 424 (623)
T PRK10261 346 DLWPGETLSLVGESGSGKSTTGRALLRLVESQGGE-IIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSI 424 (623)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcE-EEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHH
Confidence 36799999999999999999999999998887887 455654322 11 2345789999986 355566777765
Q ss_pred HHHHHHHhc-----------CCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 126 SLVDTLIRS-----------GSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 126 ~~~~~~~~~-----------~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
......... .-...+-++ ...... ..++++ |++|+...||+++..
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~-~~~LSg--GqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~ 501 (623)
T PRK10261 425 MEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRY-PHEFSG--GQRQRICIARALALNPKVIIADEAVSALDVSIRGQ 501 (623)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 432111000 001111121 111112 245655 899999999988754
Q ss_pred HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.++...+++ .|.|||+++|..+. +..+||+++.|.++.++..+
T Consensus 502 i~~ll~~l~~~~g~tvi~isHdl~~------------------v~~~~dri~vl~~G~iv~~g 546 (623)
T PRK10261 502 IINLLLDLQRDFGIAYLFISHDMAV------------------VERISHRVAVMYLGQIVEIG 546 (623)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEec
Confidence 5555555544 59999999997764 56678999999887765544
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.5e-12 Score=118.62 Aligned_cols=158 Identities=20% Similarity=0.177 Sum_probs=99.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--------CCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--------GGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQ 123 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~--------gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~ 123 (366)
+.+|++++|+|+||||||||++.+++.+.+. .|. +++++.... . ..+.+.+++.+|+.......++.+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e 102 (272)
T PRK13547 24 IEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGD-VTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSARE 102 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceE-EEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHH
Confidence 6799999999999999999999999988765 565 566665432 2 244556788888765444456666
Q ss_pred HHHHHHHHH-h-cC------------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHH---------H-------
Q 017792 124 ALSLVDTLI-R-SG------------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ---------A------- 173 (366)
Q Consensus 124 ~l~~~~~~~-~-~~------------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~---------~------- 173 (366)
.+....... . .. -...+-++....- +...+++ |++|+...+|+++. .
T Consensus 103 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSg--G~~qrv~laral~~~~~~~~~~~~p~lllLD 179 (272)
T PRK13547 103 IVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGR-DVTTLSG--GELARVQFARVLAQLWPPHDAAQPPRYLLLD 179 (272)
T ss_pred HHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcC-CcccCCH--HHHHHHHHHHHHhccccccccCCCCCEEEEc
Confidence 554311000 0 00 0000001111111 1234444 88999999999883 1
Q ss_pred -------------HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 -------------LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 -------------L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+.+ .+.|||+++|.... +..+||+++.|.++.++..
T Consensus 180 EPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~------------------~~~~~d~i~~l~~G~i~~~ 236 (272)
T PRK13547 180 EPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL------------------AARHADRIAMLADGAIVAH 236 (272)
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH------------------HHHhCCEEEEEECCeEEEe
Confidence 5555555444 48999999997654 5567899999987765443
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.4e-12 Score=121.66 Aligned_cols=160 Identities=15% Similarity=0.141 Sum_probs=100.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh----cCCeEEEEeCCCCCC---HHH----HhhcccccCcce--ecCCCCH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR----QGGYCVFIDAEHALD---PSL----AETIGVKTENLL--LAQPDCG 121 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~----~gg~vl~id~e~~~~---~~~----~~~ig~~~~~~~--~~~~~~~ 121 (366)
|++|++++|+|+||||||||++.+++.+.+ ..|. +++++++... ..+ .+.+++.+|+.. +.+..++
T Consensus 30 i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~-i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v 108 (326)
T PRK11022 30 VKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEK-LEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTV 108 (326)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceE-EEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCH
Confidence 779999999999999999999999998763 4565 5667665432 122 235899999873 3444555
Q ss_pred HHHH-HHHHHHHh----------cCCceEEEEec---ccccCCCCccCCccchhhHHHHHHHHHHH--------------
Q 017792 122 EQAL-SLVDTLIR----------SGSVDVVVVDS---VAALVPKGELDGEMGDAHMAMQARLMSQA-------------- 173 (366)
Q Consensus 122 e~~l-~~~~~~~~----------~~~~~lvviDs---l~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------- 173 (366)
.+.+ +.+..... ..-.+.+-++. ..... ..++++ |++|+...||+++..
T Consensus 109 ~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~-p~~LSg--Gq~QRv~iArAL~~~P~llilDEPts~LD 185 (326)
T PRK11022 109 GFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVY-PHQLSG--GMSQRVMIAMAIACRPKLLIADEPTTALD 185 (326)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCC-chhCCH--HHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 4332 22111000 00011111221 11112 245555 889999999988764
Q ss_pred ------HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 ------LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 ------L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+..+...+++ .+.|+|+++|.... +..+||+++.|..+.++..+.
T Consensus 186 ~~~~~~il~lL~~l~~~~g~til~iTHdl~~------------------~~~~adri~vm~~G~ive~g~ 237 (326)
T PRK11022 186 VTIQAQIIELLLELQQKENMALVLITHDLAL------------------VAEAAHKIIVMYAGQVVETGK 237 (326)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEECC
Confidence 5555555544 69999999997754 456789999998887665543
|
|
| >PRK09519 recA DNA recombination protein RecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-12 Score=134.02 Aligned_cols=84 Identities=43% Similarity=0.786 Sum_probs=81.2
Q ss_pred EEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHHHHH
Q 017792 246 KIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVIKLR 324 (366)
Q Consensus 246 ~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l~~~~~ 324 (366)
.|++|+.+||++.++|+|.|+.||++.+++++++..+++|.|+|+||+|+++++ |||++++.||++||+++++|+.++|
T Consensus 686 ~i~~~~~~~~~~~~~~~i~~g~gi~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~~~g~e~~~~~l~~~~~~~~~~~~~~~ 765 (790)
T PRK09519 686 GVVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENARNFLVENADVADEIEKKIK 765 (790)
T ss_pred hhhhhcccccccceEEEEEecCccCchhhHHHHhhhcCceeccCeeeccCCEEecccHHHHHHHHhcCHHHHHHHHHHHH
Confidence 378899999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHhcc
Q 017792 325 EKLVV 329 (366)
Q Consensus 325 ~~~~~ 329 (366)
+++..
T Consensus 766 ~~~~~ 770 (790)
T PRK09519 766 EKLGI 770 (790)
T ss_pred HHhCC
Confidence 99875
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3e-12 Score=114.75 Aligned_cols=140 Identities=19% Similarity=0.223 Sum_probs=89.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+++|++++|+|+||||||||++.+++...+..|. ++++++... ...+.+.+++.+++..+....++.+.+.......
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~-v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~ 102 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGLARPDAGE-VLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLH 102 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhc
Confidence 7799999999999999999999999998888887 556654432 2344567888888776666667777665432211
Q ss_pred hcCC-------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhhcC
Q 017792 133 RSGS-------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSLSQ 185 (366)
Q Consensus 133 ~~~~-------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~~~ 185 (366)
.... ...+-++..... +...+++ |++++...+|+++.. +.++...+++.+
T Consensus 103 ~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~--G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 179 (204)
T PRK13538 103 GPGDDEALWEALAQVGLAGFEDV-PVRQLSA--GQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQG 179 (204)
T ss_pred CccHHHHHHHHHHHcCCHHHhhC-ChhhcCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCC
Confidence 0000 000001111111 1133443 778877788777654 555555555568
Q ss_pred cEEEEEecCCccc
Q 017792 186 TILIFINQVRAKL 198 (366)
Q Consensus 186 ~tVI~i~h~~~~~ 198 (366)
.|||+++|....+
T Consensus 180 ~tiii~sh~~~~i 192 (204)
T PRK13538 180 GMVILTTHQDLPV 192 (204)
T ss_pred CEEEEEecChhhh
Confidence 9999999987763
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-12 Score=116.01 Aligned_cols=138 Identities=20% Similarity=0.243 Sum_probs=88.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---C----HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---D----PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~----~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++.+.+..|. ++++++... . ..+.+.+++.+|...++...++.+.+.+
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~ 99 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQ-VYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDL 99 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeE-EEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHH
Confidence 6799999999999999999999999998887787 566665421 1 1235678999998877776777776654
Q ss_pred HHHHHh-------c---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIR-------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~-------~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
...... . .-...+-++....-. ..++++ |++++...+|+++.. +.++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~lS~--G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 176 (206)
T TIGR03608 100 GLKYKKLSKKEKREKKKEALEKVGLNLKLKQK-IYELSG--GEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDL 176 (206)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCchhhhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHH
Confidence 211100 0 000111111111111 133443 788888888877654 5555
Q ss_pred HHHhhhcCcEEEEEecCCc
Q 017792 178 SHSLSLSQTILIFINQVRA 196 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~ 196 (366)
.+.+.+.+.|||+++|...
T Consensus 177 l~~~~~~~~tii~~sh~~~ 195 (206)
T TIGR03608 177 LLELNDEGKTIIIVTHDPE 195 (206)
T ss_pred HHHHHhcCCEEEEEeCCHH
Confidence 5555556899999999764
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-11 Score=111.43 Aligned_cols=148 Identities=16% Similarity=0.149 Sum_probs=94.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
+++|++++|.|+||||||||++.+++...+..|. +++++.... . ..+.+.+++.+|+..++. .++.+.+......
T Consensus 31 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~~~ 108 (207)
T cd03369 31 VKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGK-IEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFDEY 108 (207)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCe-EEECCEEhHHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccCCC
Confidence 6799999999999999999999999998888887 556654321 1 234567999999886664 3666655322100
Q ss_pred HhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhhcCcEEEEE
Q 017792 132 IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSLSQTILIFI 191 (366)
Q Consensus 132 ~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~~~~tVI~i 191 (366)
....-... ++ +. .....+++ |++|+...||+++.. +.++.+.+. .+.|+|++
T Consensus 109 ~~~~~~~~--l~-~~--~~~~~LS~--G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~ 180 (207)
T cd03369 109 SDEEIYGA--LR-VS--EGGLNLSQ--GQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTI 180 (207)
T ss_pred CHHHHHHH--hh-cc--CCCCcCCH--HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEE
Confidence 00000000 00 11 01233443 788888888877654 444444443 38999999
Q ss_pred ecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 192 NQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 192 ~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+|.... +.. ||+++.|.++.+
T Consensus 181 th~~~~------------------~~~-~d~v~~l~~g~i 201 (207)
T cd03369 181 AHRLRT------------------IID-YDKILVMDAGEV 201 (207)
T ss_pred eCCHHH------------------Hhh-CCEEEEEECCEE
Confidence 996653 333 788888887654
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.8e-12 Score=117.73 Aligned_cols=157 Identities=16% Similarity=0.198 Sum_probs=100.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-----gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
|.+|++++|+|+||||||||++.+++...+. .|. ++++++.... ..+.+.+++.+|+..++. .++.+.
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 104 (251)
T PRK14249 27 FPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGA-VLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFP-KSIFDN 104 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccE-EEECCEEccccccChHHhhceEEEEecCCccCc-CcHHHH
Confidence 6799999999999999999999999988765 355 5666654321 244567999999987665 477766
Q ss_pred HHHHHHHHhcCC-----------ceEEEE-ecccccCC--CCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSGS-----------VDVVVV-DSVAALVP--KGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~~-----------~~lvvi-Dsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+.+......... ...+-+ +.+..+.. ...+++ |++|+...+|+++..
T Consensus 105 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~--Gq~qrv~laral~~~p~lllLDEPt~~LD~~~ 182 (251)
T PRK14249 105 VAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSG--GQQQRLCIARVLAIEPEVILMDEPCSALDPVS 182 (251)
T ss_pred HhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 654321100000 000000 00111111 223443 888888888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+. .++|||+++|.... +..+||+++.|.++++...
T Consensus 183 ~~~l~~~l~~~~-~~~tilivsh~~~~------------------~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14249 183 TMRIEELMQELK-QNYTIAIVTHNMQQ------------------AARASDWTGFLLTGDLVEY 227 (251)
T ss_pred HHHHHHHHHHHh-cCCEEEEEeCCHHH------------------HHhhCCEEEEEeCCeEEEe
Confidence 555555553 47999999997764 5567899999987765433
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.3e-12 Score=115.36 Aligned_cols=158 Identities=15% Similarity=0.131 Sum_probs=98.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH--hh---cCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA--QR---QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~--~~---~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++.. .+ ..|. +++++..... ..+.+.++|.+|+..++. .++.+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~n 103 (250)
T PRK14245 26 IEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGE-IRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFEN 103 (250)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceE-EEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHH
Confidence 6799999999999999999999998863 22 2565 5666654321 244567999999876665 477666
Q ss_pred HHHHHHHHhcC-----------CceEEEEe-cccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSG-----------SVDVVVVD-SVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~-----------~~~lvviD-sl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+.......... -...+-+. .+.... +...+++ |++|+...||+++..
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~--G~~qrv~laral~~~p~lllLDEPt~~LD~~~ 181 (250)
T PRK14245 104 VAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSG--GQQQRLCIARAMAVSPSVLLMDEPASALDPIS 181 (250)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 54321110000 00000000 000111 1123444 888888888887643
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.++...+. .++|||+++|.... +..+||+++.|+++.++..+
T Consensus 182 ~~~l~~~l~~~~-~~~tiiivtH~~~~------------------~~~~~d~v~~l~~G~~~~~~ 227 (250)
T PRK14245 182 TAKVEELIHELK-KDYTIVIVTHNMQQ------------------AARVSDKTAFFYMGEMVEYD 227 (250)
T ss_pred HHHHHHHHHHHh-cCCeEEEEeCCHHH------------------HHhhCCEEEEEECCEEEEEC
Confidence 555555554 37999999997654 55678999999887655544
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.8e-12 Score=116.79 Aligned_cols=146 Identities=14% Similarity=0.125 Sum_probs=94.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++.+.+ ..|. +++++++.. . ..+.+.+++.+|+..++ ..++.+.
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~en 108 (261)
T PRK14263 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGH-VHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDN 108 (261)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceE-EEECCEeccccccchHhhhhceEEEecCCccc-cccHHHH
Confidence 779999999999999999999999998865 4565 566765432 1 23456789999987665 4667666
Q ss_pred HHHHHH--------------HHhcCCceEEEEecccccC--CCCccCCccchhhHHHHHHHHHHH---------------
Q 017792 125 LSLVDT--------------LIRSGSVDVVVVDSVAALV--PKGELDGEMGDAHMAMQARLMSQA--------------- 173 (366)
Q Consensus 125 l~~~~~--------------~~~~~~~~lvviDsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~--------------- 173 (366)
+..... .+...... ..+.... +...+++ |++|+...+|++...
T Consensus 109 l~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~i~~~~~~~~~~LS~--G~~qrv~laral~~~p~llllDEPtsgLD~ 182 (261)
T PRK14263 109 VAFGLRLNRYKGDLGDRVKHALQGAALW----DEVKDKLKVSGLSLSG--GQQQRLCIARAIATEPEVLLLDEPCSALDP 182 (261)
T ss_pred HHHHHhhcCchHHHHHHHHHHHHHcCCc----hhhhhhhhCCcccCCH--HHHHHHHHHHHHHcCCCEEEEeCCCccCCH
Confidence 543211 11111110 0000010 1123443 788888888887654
Q ss_pred -----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEE
Q 017792 174 -----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIK 227 (366)
Q Consensus 174 -----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~ 227 (366)
+.++...+++ +.|||+++|..+. +..+||+++.|.
T Consensus 183 ~~~~~l~~~l~~~~~-~~tii~isH~~~~------------------i~~~~d~v~~l~ 222 (261)
T PRK14263 183 IATRRVEELMVELKK-DYTIALVTHNMQQ------------------AIRVADTTAFFS 222 (261)
T ss_pred HHHHHHHHHHHHHhc-CCeEEEEeCCHHH------------------HHHhCCEEEEEe
Confidence 5555555543 7899999997654 556789998886
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.9e-12 Score=117.15 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=97.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~-----~~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+.+|++++|+|+||||||||++.+++... +..|. +++++.... + ..+.+.++|.+|+..++.. ++.+.
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~en 121 (268)
T PRK14248 44 IEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGE-ILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNN 121 (268)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceE-EEECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHH
Confidence 67999999999999999999999999753 34565 566665432 1 2345679999998766653 66665
Q ss_pred HHHHHHHHhc-C----------CceEEEEe-cccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRS-G----------SVDVVVVD-SVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~-~----------~~~lvviD-sl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+......... . ....+-++ .+.... +...+++ |++|+...||+++..
T Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg--Gq~qrl~laral~~~p~lllLDEPt~~LD~~~ 199 (268)
T PRK14248 122 ITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSG--GQQQRLCIARTLAMKPAVLLLDEPASALDPIS 199 (268)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCH--HHHHHHHHHHHHhCCCCEEEEcCCCcccCHHH
Confidence 5432111000 0 00000010 011111 1233444 788888888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+..+...+.+ +.|||+++|.... +..+||+++.|.++.++..+
T Consensus 200 ~~~l~~~l~~~~~-~~tiii~tH~~~~------------------~~~~~d~v~~l~~G~i~~~~ 245 (268)
T PRK14248 200 NAKIEELITELKE-EYSIIIVTHNMQQ------------------ALRVSDRTAFFLNGDLVEYD 245 (268)
T ss_pred HHHHHHHHHHHhc-CCEEEEEEeCHHH------------------HHHhCCEEEEEECCEEEEeC
Confidence 5555555544 6899999997654 55678999999877654443
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.2e-12 Score=117.65 Aligned_cols=158 Identities=14% Similarity=0.138 Sum_probs=100.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-----gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++.+.+. .|. ++++++... . ..+.+.+++.+|+..++ +.++.+.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~en 107 (254)
T PRK14273 30 ILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGN-VIYEGKNIYSNNFDILELRRKIGMVFQTPNPF-LMSIYDN 107 (254)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceE-EEECCEecccccccHHHHhhceEEEeeccccc-cCcHHHH
Confidence 6799999999999999999999999988753 565 566665422 1 23456799999987666 3677776
Q ss_pred HHHHHHHHhcCC-----------ceEEEE-ecccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSGS-----------VDVVVV-DSVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~~-----------~~lvvi-Dsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+.+......... ...+-+ +.+.... ....+++ |++|+...+|+++..
T Consensus 108 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg--G~~qrv~laral~~~p~lllLDEPt~~LD~~~ 185 (254)
T PRK14273 108 ISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSG--GQQQRLCIARTLAIEPNVILMDEPTSALDPIS 185 (254)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCH--HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHH
Confidence 654221100000 000000 0011111 1234444 888888888887754
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+..+...++ .++|||+++|..+. +..+||+++.|.++.++..+
T Consensus 186 ~~~l~~~l~~~~-~~~tvii~sH~~~~------------------~~~~~d~i~~l~~G~i~~~g 231 (254)
T PRK14273 186 TGKIEELIINLK-ESYTIIIVTHNMQQ------------------AGRISDRTAFFLNGCIEEES 231 (254)
T ss_pred HHHHHHHHHHHh-cCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEeC
Confidence 555555554 37999999997654 45678999888877654443
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.4e-12 Score=117.18 Aligned_cols=157 Identities=13% Similarity=0.141 Sum_probs=98.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++...+ ..|. ++++++.... ..+...+++.+|+..++. .++.+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~n 103 (250)
T PRK14240 26 IEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGE-VLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDN 103 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceE-EEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHH
Confidence 679999999999999999999999987652 3565 5677654321 234567899999877665 677666
Q ss_pred HHHHHHHHhcC---C--------ceEEEE-ecccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSG---S--------VDVVVV-DSVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~---~--------~~lvvi-Dsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+.......... . ...+-+ +.+.... +...+++ |++|+...+|++...
T Consensus 104 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~--G~~qrv~laral~~~p~llllDEP~~~LD~~~ 181 (250)
T PRK14240 104 VAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSG--GQQQRLCIARALAVEPEVLLMDEPTSALDPIS 181 (250)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 55422110000 0 000000 0011111 1233444 888888888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+ +.|||+++|..+. +..+||+++.|.++++...
T Consensus 182 ~~~l~~~l~~~~~-~~tiii~sH~~~~------------------~~~~~d~v~~l~~G~i~~~ 226 (250)
T PRK14240 182 TLKIEELIQELKK-DYTIVIVTHNMQQ------------------ASRISDKTAFFLNGEIVEF 226 (250)
T ss_pred HHHHHHHHHHHhc-CCeEEEEEeCHHH------------------HHhhCCEEEEEECCEEEEe
Confidence 5555555543 7899999997654 5567899999987765443
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.7e-12 Score=112.86 Aligned_cols=138 Identities=17% Similarity=0.142 Sum_probs=88.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+.+|++++|+||||||||||++.+++.+.+..|. ++++++... ...+.+.+++.+++..+....++.+.+.......
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 101 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGE-VRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIH 101 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccE-EEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHc
Confidence 6799999999999999999999999988887776 566665422 2334567889888876666677777665433221
Q ss_pred hcCC------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhhcCc
Q 017792 133 RSGS------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSLSQT 186 (366)
Q Consensus 133 ~~~~------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~~~~ 186 (366)
.... ...+-++...... ...+++ |++++...+|++... +.++...+++.+.
T Consensus 102 ~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 178 (198)
T TIGR01189 102 GGAQRTIEDALAAVGLTGFEDLP-AAQLSA--GQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGG 178 (198)
T ss_pred CCcHHHHHHHHHHcCCHHHhcCC-hhhcCH--HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCC
Confidence 1000 0111111111111 133443 777777788777643 5555555555689
Q ss_pred EEEEEecCCc
Q 017792 187 ILIFINQVRA 196 (366)
Q Consensus 187 tVI~i~h~~~ 196 (366)
|||+++|...
T Consensus 179 tii~~sH~~~ 188 (198)
T TIGR01189 179 IVLLTTHQDL 188 (198)
T ss_pred EEEEEEcccc
Confidence 9999999654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.4e-12 Score=116.28 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=96.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++...+ ..|. +++++.... . ..+.+.+++.+|+..++...++.+.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~-I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~n 105 (258)
T PRK14241 27 IEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGE-VLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDN 105 (258)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceE-EEECCEeccccccChHHHhcceEEEccccccCCCCcHHHH
Confidence 679999999999999999999999998764 3565 566665431 1 2445679999998877776788776
Q ss_pred HHHHHHHHhc--CC---------ceEEEEe-cccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRS--GS---------VDVVVVD-SVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~--~~---------~~lvviD-sl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+......... .. ...+-++ .+.... +...+++ |++|+...||++...
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~ 183 (258)
T PRK14241 106 VVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSG--GQQQRLCIARAIAVEPDVLLMDEPCSALDPIS 183 (258)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 6542211000 00 0000000 000111 1133444 888888888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEE
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIK 227 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~ 227 (366)
+.++...+++ ++|||+++|.... +..+||+++.|.
T Consensus 184 ~~~l~~~l~~~~~-~~tviivsH~~~~------------------~~~~~d~i~~l~ 221 (258)
T PRK14241 184 TLAIEDLINELKQ-DYTIVIVTHNMQQ------------------AARVSDQTAFFN 221 (258)
T ss_pred HHHHHHHHHHHhc-CCEEEEEecCHHH------------------HHHhCCEEEEEe
Confidence 5555555543 6899999997654 455788888886
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.6e-12 Score=115.97 Aligned_cols=155 Identities=21% Similarity=0.258 Sum_probs=97.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---CHHHHhhcccccCcceecCCCCHHHHHHHHH-
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVD- 129 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~- 129 (366)
-+++|++++|.|+||||||||++.+++...+..|. ++++++... ...+.+.+++.+++..++. .++.+.+....
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~-v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~ 100 (236)
T cd03253 23 TIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS-ILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP 100 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCE-EEECCEEhhhCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC
Confidence 37799999999999999999999999998888887 566654332 1244567899999877663 46665543211
Q ss_pred --------HHHhcCCceEEEEec----ccccC--CCCccCCccchhhHHHHHHHHHHH--------------------HH
Q 017792 130 --------TLIRSGSVDVVVVDS----VAALV--PKGELDGEMGDAHMAMQARLMSQA--------------------LR 175 (366)
Q Consensus 130 --------~~~~~~~~~lvviDs----l~~l~--~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~ 175 (366)
.........- .++. +.... +...+++ |++++...+|+++.. +.
T Consensus 101 ~~~~~~~~~~~~~~~l~~-~~~~l~~~~~~~~~~~~~~LS~--G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~ 177 (236)
T cd03253 101 DATDEEVIEAAKAAQIHD-KIMRFPDGYDTIVGERGLKLSG--GEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177 (236)
T ss_pred CCCHHHHHHHHHHcCcHH-HHHhccccccchhhcCCCcCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 0000000000 0000 11111 0123443 788888888877653 55
Q ss_pred HHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 176 KLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 176 ~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
.+...+++ +.|||+++|.... +.. ||+++.|.++.+..
T Consensus 178 ~~l~~~~~-~~tiii~sh~~~~------------------~~~-~d~~~~l~~g~i~~ 215 (236)
T cd03253 178 AALRDVSK-GRTTIVIAHRLST------------------IVN-ADKIIVLKDGRIVE 215 (236)
T ss_pred HHHHHhcC-CCEEEEEcCCHHH------------------HHh-CCEEEEEECCEEEe
Confidence 55555555 8999999997654 333 88888888776543
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.1e-12 Score=116.50 Aligned_cols=159 Identities=18% Similarity=0.238 Sum_probs=100.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+.+|++++|+|+||||||||+..+++.+.+..|. ++++++.... ....+.+++.++...++...++.+.+........
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~ 101 (237)
T TIGR00968 23 VPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGR-IRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK 101 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC
Confidence 6799999999999999999999999988877787 5676654332 1234578999998877776677766643321100
Q ss_pred cCC---c-eE-EEEecc--cccCC--CCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhhc
Q 017792 134 SGS---V-DV-VVVDSV--AALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSLS 184 (366)
Q Consensus 134 ~~~---~-~l-vviDsl--~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~~ 184 (366)
... . .+ -.++.+ ..+.. ...+++ |++|+...+|+++.. +.++...+++.
T Consensus 102 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~--G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~ 179 (237)
T TIGR00968 102 HPKAKIKARVEELLELVQLEGLGDRYPNQLSG--GQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDE 179 (237)
T ss_pred CCHHHHHHHHHHHHHHcCCHhHhhCChhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 000 0 00 000100 11110 122333 778888888877643 54555554443
Q ss_pred -CcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 185 -QTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 185 -~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
++|||+++|.... +..+||+++.|..+.+...
T Consensus 180 ~~~tvli~sH~~~~------------------~~~~~d~i~~l~~g~i~~~ 212 (237)
T TIGR00968 180 VHVTTVFVTHDQEE------------------AMEVADRIVVMSNGKIEQI 212 (237)
T ss_pred cCCEEEEEeCCHHH------------------HHhhcCEEEEEECCEEEEe
Confidence 8999999997654 5667899988887665433
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-12 Score=117.03 Aligned_cols=153 Identities=18% Similarity=0.178 Sum_probs=97.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H----HHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P----SLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~----~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|.|+||||||||+..+++.+.+..|. +++++..... . .+.+.+++.+|+..++...++.+.+...
T Consensus 28 i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~ 106 (220)
T TIGR02982 28 INPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGS-LKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMA 106 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHH
Confidence 6799999999999999999999999988877787 5666654321 1 3456799999988777666777766543
Q ss_pred HHHHhcCC-----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 129 DTLIRSGS-----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 129 ~~~~~~~~-----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
........ ...+-++...... ...+++ |++|+...+|+++.. +..+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~lS~--G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~ 183 (220)
T TIGR02982 107 LELQPNLSYQEARERARAMLEAVGLGDHLDYY-PHNLSG--GQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVEL 183 (220)
T ss_pred HHhccCCCHHHHHHHHHHHHHHcCChhhhhcC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH
Confidence 22110000 0000011111111 123333 778888888877653 4555
Q ss_pred HHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEec
Q 017792 178 SHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 230 (366)
Q Consensus 178 ~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~ 230 (366)
...+.+ .++|||+++|..+ +..+||.++.|.+++
T Consensus 184 l~~~~~~~~~tii~~sh~~~-------------------~~~~~d~v~~l~~g~ 218 (220)
T TIGR02982 184 MQKLAREQGCTILIVTHDNR-------------------ILDVADRIVHMEDGK 218 (220)
T ss_pred HHHHHHHcCCEEEEEeCCHH-------------------HHhhCCEEEEEECCE
Confidence 555444 5899999999753 224688888887653
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-12 Score=129.36 Aligned_cols=139 Identities=17% Similarity=0.213 Sum_probs=89.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--cCCeEEEEeCCCCCC--H--HHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR--QGGYCVFIDAEHALD--P--SLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~--~gg~vl~id~e~~~~--~--~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+.+|++++|+||||||||||++.+++.+.+ ..|. +++++..... . .+.+.+++.+|+..++...++.+.+.+.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 106 (506)
T PRK13549 28 VRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGE-IIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLG 106 (506)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeE-EEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhc
Confidence 679999999999999999999999998875 4666 5666654322 1 2345699999988777777777765432
Q ss_pred HHHHh-c-CC-----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HH
Q 017792 129 DTLIR-S-GS-----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LR 175 (366)
Q Consensus 129 ~~~~~-~-~~-----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~ 175 (366)
..... . .. ...+-++...... ...+++ |++|+...||+++.. +.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 183 (506)
T PRK13549 107 NEITPGGIMDYDAMYLRAQKLLAQLKLDINPATP-VGNLGL--GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLL 183 (506)
T ss_pred ccccccCCcCHHHHHHHHHHHHHHcCCCCCcccc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 11000 0 00 0001111111111 234444 888888888887654 55
Q ss_pred HHHHHhhhcCcEEEEEecCCcc
Q 017792 176 KLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 176 ~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
++...+++.+.|||+++|..+.
T Consensus 184 ~~l~~l~~~~~tvi~~tH~~~~ 205 (506)
T PRK13549 184 DIIRDLKAHGIACIYISHKLNE 205 (506)
T ss_pred HHHHHHHHCCCEEEEEeCcHHH
Confidence 6665666678999999998765
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.8e-12 Score=114.96 Aligned_cols=160 Identities=18% Similarity=0.207 Sum_probs=94.3
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHH--hhcCCeEEEEeCCCCCC--H-HH-HhhcccccCcceecCCCCHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFIDAEHALD--P-SL-AETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~--~~~gg~vl~id~e~~~~--~-~~-~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
-+++|++++|+|+||||||||++.+++.. .+..|. ++++++.... . .. ...+++.+++..++...+.......
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 101 (248)
T PRK09580 23 EVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGT-VEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQT 101 (248)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceE-EEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHH
Confidence 37799999999999999999999999985 456676 6777764322 2 22 2458888887655443333222221
Q ss_pred HHHHHhcC-Cce----------------EEEE-ecccccCCCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 128 VDTLIRSG-SVD----------------VVVV-DSVAALVPKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 128 ~~~~~~~~-~~~----------------lvvi-Dsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
....+... ... .+-+ +......+...+++ |++++...||++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~--G~~qrv~laral~~~p~illLDEPt~~LD~~ 179 (248)
T PRK09580 102 ALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG--GEKKRNDILQMAVLEPELCILDESDSGLDID 179 (248)
T ss_pred hhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCH--HHHHHHHHHHHHHcCCCEEEEeCCCccCCHH
Confidence 11000000 000 0000 00001110113544 888888888887664
Q ss_pred ----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeee-ceEEEEEEEeceeec
Q 017792 174 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFY-ASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~-ad~~i~l~~~~~~~~ 234 (366)
+.++...+++.++|||+++|.... +..+ +|+++.|.++.+...
T Consensus 180 ~~~~l~~~l~~l~~~~~tiii~sH~~~~------------------~~~~~~d~i~~l~~g~i~~~ 227 (248)
T PRK09580 180 ALKIVADGVNSLRDGKRSFIIVTHYQRI------------------LDYIKPDYVHVLYQGRIVKS 227 (248)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHH------------------HHhhhCCEEEEEECCeEEEe
Confidence 555555566678999999997653 3444 788888876654433
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.9e-12 Score=128.42 Aligned_cols=157 Identities=17% Similarity=0.183 Sum_probs=99.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C--HHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D--PSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
-+++|++++|+|+||||||||++.+++...+..|. +++++.... . ..+.+.+++.+|+..++...++.+.+.+..
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 104 (501)
T PRK11288 26 DCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGS-ILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQ 104 (501)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCE-EEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcc
Confidence 47899999999999999999999999988887887 566654322 1 234557899999877776667766654321
Q ss_pred H--HHh--------c---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 130 T--LIR--------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 130 ~--~~~--------~---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
. ... . .-...+-++...... ...+++ |++|+...||+++.. +.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 181 (501)
T PRK11288 105 LPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-LKYLSI--GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFR 181 (501)
T ss_pred cccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-hhhCCH--HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 0 000 0 000011111111111 234554 888888888887764 555
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
+...+++.|.|||+++|..+. +..+||+++.|+++.++
T Consensus 182 ~l~~~~~~g~tiiiitHd~~~------------------~~~~~d~i~~l~~G~i~ 219 (501)
T PRK11288 182 VIRELRAEGRVILYVSHRMEE------------------IFALCDAITVFKDGRYV 219 (501)
T ss_pred HHHHHHhCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEE
Confidence 555556679999999998765 34456666666655443
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=4e-12 Score=134.41 Aligned_cols=153 Identities=20% Similarity=0.267 Sum_probs=103.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQAL------ 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l------ 125 (366)
+++|+.++|+|++|||||||++.+++.+.+..|. +++|+.+..+ ..+++.+++++|+..++.. |+.+++
T Consensus 502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~-I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~~~ 579 (710)
T TIGR03796 502 LQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGE-ILFDGIPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWDPT 579 (710)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCCCC
Confidence 7899999999999999999999999999998886 6777765422 4678899999998876542 333332
Q ss_pred -------HHHHH-----HHhcCCceEEEEecccccCC--CCccCCccchhhHHHHHHHHHHH-----------------H
Q 017792 126 -------SLVDT-----LIRSGSVDVVVVDSVAALVP--KGELDGEMGDAHMAMQARLMSQA-----------------L 174 (366)
Q Consensus 126 -------~~~~~-----~~~~~~~~lvviDsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~-----------------L 174 (366)
+.+.. .+.... +.+..... ...+++ |++|+...||++.+. =
T Consensus 580 ~~~~~i~~al~~~~l~~~i~~lp------~gl~t~i~e~G~~LSG--GQrQRiaLARall~~p~iliLDEptS~LD~~te 651 (710)
T TIGR03796 580 IPDADLVRACKDAAIHDVITSRP------GGYDAELAEGGANLSG--GQRQRLEIARALVRNPSILILDEATSALDPETE 651 (710)
T ss_pred CCHHHHHHHHHHhCCHHHHHhCc------CcccceeccCCCCCCH--HHHHHHHHHHHHhhCCCEEEEECccccCCHHHH
Confidence 22211 111110 11111211 133444 899999999998764 2
Q ss_pred HHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
..+...+++.++|+|+++|..+. +. .||+++.|++++++..|+
T Consensus 652 ~~i~~~l~~~~~T~IiitHrl~~------------------i~-~~D~Iivl~~G~i~~~G~ 694 (710)
T TIGR03796 652 KIIDDNLRRRGCTCIIVAHRLST------------------IR-DCDEIIVLERGKVVQRGT 694 (710)
T ss_pred HHHHHHHHhcCCEEEEEecCHHH------------------HH-hCCEEEEEeCCEEEEecC
Confidence 33444445579999999996543 33 389999999887665543
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.32 E-value=3e-12 Score=112.41 Aligned_cols=140 Identities=19% Similarity=0.247 Sum_probs=86.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcce----------ecCCCCH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLL----------LAQPDCG 121 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~----------~~~~~~~ 121 (366)
+.+|++++|.|+||||||||++.+++.+.+..|. +++++.... + ..+...+++.+|-+. .....+.
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~-v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGE-ILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 6799999999999999999999999988888887 566655432 1 234445666554100 0111222
Q ss_pred H--HHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 122 E--QALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 122 e--~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
- +-+.++..++ .+++++++|....-... ...+.+.+.+..+. ++.++|+|+++|..+.
T Consensus 101 G~~qrl~laral~--~~p~llllDEP~~~LD~-------------~~~~~~~~~l~~~~---~~~~~tiii~sh~~~~-- 160 (180)
T cd03214 101 GERQRVLLARALA--QEPPILLLDEPTSHLDI-------------AHQIELLELLRRLA---RERGKTVVMVLHDLNL-- 160 (180)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEeCCccCCCH-------------HHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH--
Confidence 2 2233344443 36789999988765520 11122333333332 2238999999997764
Q ss_pred cccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 200 TFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 200 ~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+..+||+++.|.++.+
T Consensus 161 ----------------~~~~~d~~~~l~~g~i 176 (180)
T cd03214 161 ----------------AARYADRVILLKDGRI 176 (180)
T ss_pred ----------------HHHhCCEEEEEECCEE
Confidence 4456888888876543
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.1e-12 Score=113.59 Aligned_cols=134 Identities=15% Similarity=0.162 Sum_probs=87.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CHHHHhhcccccCcceecCCCCHHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKTENLLLAQPDCGEQALSLVD--- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~--- 129 (366)
+++|++++|+|+||||||||++.+++.+.+..|. ++++++... ...+.+.+++.+|+..+....++.+.+....
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 101 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGR-VLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADH 101 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccc
Confidence 7799999999999999999999999988888887 456654432 2345667899888876666667766654321
Q ss_pred ------HHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhh
Q 017792 130 ------TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSL 183 (366)
Q Consensus 130 ------~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~ 183 (366)
.++.... ++...... ...+++ |++|+...||+++.. +.++...+++
T Consensus 102 ~~~~~~~~l~~~~-----l~~~~~~~-~~~LS~--G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 173 (201)
T cd03231 102 SDEQVEEALARVG-----LNGFEDRP-VAQLSA--GQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA 173 (201)
T ss_pred cHHHHHHHHHHcC-----ChhhhcCc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 1111111 11111111 123443 777777778777653 4555544455
Q ss_pred cCcEEEEEecCCcc
Q 017792 184 SQTILIFINQVRAK 197 (366)
Q Consensus 184 ~~~tVI~i~h~~~~ 197 (366)
.++|+|+++|....
T Consensus 174 ~g~tiii~sH~~~~ 187 (201)
T cd03231 174 RGGMVVLTTHQDLG 187 (201)
T ss_pred CCCEEEEEecCchh
Confidence 68999999997654
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.6e-12 Score=130.39 Aligned_cols=157 Identities=13% Similarity=0.211 Sum_probs=102.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C--HHHHhhcccccCcce---ecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D--PSLAETIGVKTENLL---LAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~--~~~~~~ig~~~~~~~---~~~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++...+.+|. ++++++... . ..+...+++.+|+.. ++...++.+.+..
T Consensus 276 i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~-i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~ 354 (501)
T PRK11288 276 VRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQ-VYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINI 354 (501)
T ss_pred EeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCce-EEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhcc
Confidence 6899999999999999999999999998888887 466654322 1 123456899998753 5555667665432
Q ss_pred HHH-H----------------HhcCCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 128 VDT-L----------------IRSGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 128 ~~~-~----------------~~~~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
... . +.. -...+-++ .... .+...+++ |++|+...|++++..
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~-~~~~~LSg--Gq~qrl~la~al~~~p~lllLDEPt~~LD~~ 430 (501)
T PRK11288 355 SARRHHLRAGCLINNRWEAENADR-FIRSLNIKTPSRE-QLIMNLSG--GNQQKAILGRWLSEDMKVILLDEPTRGIDVG 430 (501)
T ss_pred ccchhhcccccccChHHHHHHHHH-HHHhcCcccCCcc-CccccCCH--HHHHHHHHHHHHccCCCEEEEcCCCCCCCHh
Confidence 100 0 000 00111111 1111 11234544 888888888887653
Q ss_pred ----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+.|.|||+++|..+. +..+||+++.|.+++++..
T Consensus 431 ~~~~l~~~l~~l~~~g~tviivsHd~~~------------------~~~~~d~i~~l~~g~i~~~ 477 (501)
T PRK11288 431 AKHEIYNVIYELAAQGVAVLFVSSDLPE------------------VLGVADRIVVMREGRIAGE 477 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCHHH------------------HHhhCCEEEEEECCEEEEE
Confidence 666666667779999999998765 5567899998887665443
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.5e-12 Score=115.38 Aligned_cols=157 Identities=13% Similarity=0.149 Sum_probs=99.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++...+ ..|. ++++++.... ..+.+.+++.+|+..++. .++.+.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~en 104 (251)
T PRK14270 27 IYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGE-VLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDN 104 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccE-EEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHH
Confidence 679999999999999999999999998764 4565 5666654321 234567999999887665 677776
Q ss_pred HHHHHHHHhcCC-----------ceEEEE-ecccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSGS-----------VDVVVV-DSVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~~-----------~~lvvi-Dsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+.+......... .+.+-+ +.+.... +...+++ |++|+...+|+++..
T Consensus 105 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~--G~~qrv~laral~~~p~llllDEP~~~LD~~~ 182 (251)
T PRK14270 105 VAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSG--GQQQRLCIARTIAVKPDVILMDEPTSALDPIS 182 (251)
T ss_pred HHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 653221100000 000000 0001111 1233444 888888888887643
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+ +.|||+++|..+. +..+||+++.|..+.+...
T Consensus 183 ~~~l~~~L~~~~~-~~tiiivsH~~~~------------------~~~~~d~v~~l~~G~i~~~ 227 (251)
T PRK14270 183 TLKIEDLMVELKK-EYTIVIVTHNMQQ------------------ASRVSDYTAFFLMGDLIEF 227 (251)
T ss_pred HHHHHHHHHHHHh-CCeEEEEEcCHHH------------------HHHhcCEEEEEECCeEEEe
Confidence 5555555544 5899999997654 5567899999987765443
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=110.41 Aligned_cols=135 Identities=15% Similarity=0.146 Sum_probs=90.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVD--- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~--- 129 (366)
+.+|++++|+|+||||||||++.+++...+..|. ++++++.... ..+.+++++.+++..+....++.+.+....
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~ 102 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGE-ILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS 102 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCee-EEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC
Confidence 5699999999999999999999999988887776 6777765432 345667899988877666678777665421
Q ss_pred -------HHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 130 -------TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 130 -------~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
..+..... ..... .+...+++ |++++...+|+++.. +.++...++
T Consensus 103 ~~~~~~~~~l~~~~l-----~~~~~-~~~~~LS~--G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~ 174 (200)
T PRK13540 103 PGAVGITELCRLFSL-----EHLID-YPCGLLSS--GQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHR 174 (200)
T ss_pred cchHHHHHHHHHcCC-----chhhh-CChhhcCH--HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHH
Confidence 11111110 00000 01123443 788888888877654 555555555
Q ss_pred hcCcEEEEEecCCccc
Q 017792 183 LSQTILIFINQVRAKL 198 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~ 198 (366)
+.++|||+++|....+
T Consensus 175 ~~~~tiii~sh~~~~~ 190 (200)
T PRK13540 175 AKGGAVLLTSHQDLPL 190 (200)
T ss_pred HcCCEEEEEeCCchhc
Confidence 5689999999976653
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.8e-12 Score=115.26 Aligned_cols=157 Identities=16% Similarity=0.122 Sum_probs=97.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~-----~~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+.+|++++|+|+||||||||++.+++... +..|. +++++..... ..+.+.++|.+|+..++.. ++.+.
T Consensus 28 i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~n 105 (251)
T PRK14244 28 IYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGE-LDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDN 105 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceE-EEECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHH
Confidence 66999999999999999999999999875 23565 5666543211 1345678999998766654 66665
Q ss_pred HHHHHHHHhcC----C--------ceEEEEec-ccccC--CCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 125 LSLVDTLIRSG----S--------VDVVVVDS-VAALV--PKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~----~--------~~lvviDs-l~~l~--~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
+.......... . .+.+-+.. +.... +...+++ |++|+...+|++...
T Consensus 106 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~--Gq~qrv~laral~~~p~llllDEPt~~LD~~ 183 (251)
T PRK14244 106 VAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSG--GQQQRLCIARAIAVKPTMLLMDEPCSALDPV 183 (251)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 54321110000 0 00000100 00000 1123443 788888888887653
Q ss_pred ----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+ ++|||+++|..+. +..+||+++.|.++.+...
T Consensus 184 ~~~~l~~~l~~~~~-~~tiiiisH~~~~------------------~~~~~d~i~~l~~G~i~~~ 229 (251)
T PRK14244 184 ATNVIENLIQELKK-NFTIIVVTHSMKQ------------------AKKVSDRVAFFQSGRIVEY 229 (251)
T ss_pred HHHHHHHHHHHHhc-CCeEEEEeCCHHH------------------HHhhcCEEEEEECCEEEEe
Confidence 5555555543 8999999997654 5667899999988765443
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.5e-12 Score=115.34 Aligned_cols=157 Identities=10% Similarity=0.106 Sum_probs=97.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~-----~~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++... +..|. +++++..... ..+.+.+++.+|+..++. .++.+.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~-v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~en 104 (251)
T PRK14251 27 FEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGE-IKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDN 104 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceE-EEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHH
Confidence 67999999999999999999999999876 24665 5666654321 234567899999877664 577776
Q ss_pred HHHHHHHHhcC-------C----ceEEEEe-cccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSG-------S----VDVVVVD-SVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~-------~----~~lvviD-sl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+.......... . .+.+-+. .+.... +...+++ |++|+...+|+++..
T Consensus 105 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~--Gq~qr~~laral~~~p~llllDEP~~~LD~~~ 182 (251)
T PRK14251 105 VAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSG--GQQQRICIARALAVRPKVVLLDEPTSALDPIS 182 (251)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCH--HHHHHHHHHHHHhcCCCEEEecCCCccCCHHH
Confidence 65422110000 0 0000010 000000 1123443 788888888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+.+ +.|||+++|.... +..+||+++.|.++.+...
T Consensus 183 ~~~l~~~l~~~~~-~~tiiiisH~~~~------------------~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14251 183 SSEIEETLMELKH-QYTFIMVTHNLQQ------------------AGRISDQTAFLMNGDLIEA 227 (251)
T ss_pred HHHHHHHHHHHHc-CCeEEEEECCHHH------------------HHhhcCEEEEEECCEEEEe
Confidence 4444444433 6899999997654 5567899998887665433
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.9e-12 Score=117.28 Aligned_cols=157 Identities=16% Similarity=0.141 Sum_probs=98.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCCC----HHHHhhcccccCcceecCCCCHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQAL 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~~----~~~~~~ig~~~~~~~~~~~~~~e~~l 125 (366)
|++|++++|+|+||||||||++.+++.+.+ ..|. +++++..... ..+...++|.+|+..++. .++.+.+
T Consensus 44 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~-i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni 121 (276)
T PRK14271 44 FPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGD-VLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNV 121 (276)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceE-EEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHH
Confidence 779999999999999999999999998875 3565 5666654321 245667899999877665 6776655
Q ss_pred HHHHHHHhcCC-----------ceEEEEec-ccccC--CCCccCCccchhhHHHHHHHHHHH------------------
Q 017792 126 SLVDTLIRSGS-----------VDVVVVDS-VAALV--PKGELDGEMGDAHMAMQARLMSQA------------------ 173 (366)
Q Consensus 126 ~~~~~~~~~~~-----------~~lvviDs-l~~l~--~~~~l~~~~g~~~~~~~ar~l~~~------------------ 173 (366)
........... ...+-+.. +.... ....+++ |++|+...||+++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSg--Gq~qrl~LAral~~~p~lllLDEPt~~LD~~~~ 199 (276)
T PRK14271 122 LAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSG--GQQQLLCLARTLAVNPEVLLLDEPTSALDPTTT 199 (276)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 43211100000 00000100 00011 1123444 888888888887654
Q ss_pred --HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 --LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 --L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+ ++|||+++|.... +..+||+++.|.++.+...
T Consensus 200 ~~l~~~L~~~~~-~~tiiivsH~~~~------------------~~~~~dri~~l~~G~i~~~ 243 (276)
T PRK14271 200 EKIEEFIRSLAD-RLTVIIVTHNLAQ------------------AARISDRAALFFDGRLVEE 243 (276)
T ss_pred HHHHHHHHHHhc-CCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 4454544444 5899999997654 5567899999987654433
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-12 Score=130.74 Aligned_cols=157 Identities=15% Similarity=0.179 Sum_probs=98.8
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--cCCeEEEEeCCCCCC--H--HHHhhcccccCcceecCCCCHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR--QGGYCVFIDAEHALD--P--SLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~--~gg~vl~id~e~~~~--~--~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
-+++|++++|+||||||||||++.+++...+ ..|. +++++..... . .+.+.+++.+|+..++...++.+.+.+
T Consensus 23 ~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 101 (500)
T TIGR02633 23 EVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGE-IYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFL 101 (500)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeE-EEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHh
Confidence 3779999999999999999999999998765 4566 5666554322 1 234568999998877777777776543
Q ss_pred HHHHHh-c--CC-----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 128 VDTLIR-S--GS-----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 128 ~~~~~~-~--~~-----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
...... . .. ...+-++....-.+...+++ |++|+...||+++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg--G~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~ 179 (500)
T TIGR02633 102 GNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGG--GQQQLVEIAKALNKQARLLILDEPSSSLTEKETEI 179 (500)
T ss_pred hccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCH--HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Confidence 211000 0 00 00000111100011234554 888888888887764
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+.++...+++.|+|||+++|..+. +..+||+++.|+++.+
T Consensus 180 l~~~l~~l~~~g~tviiitHd~~~------------------~~~~~d~i~~l~~G~i 219 (500)
T TIGR02633 180 LLDIIRDLKAHGVACVYISHKLNE------------------VKAVCDTICVIRDGQH 219 (500)
T ss_pred HHHHHHHHHhCCCEEEEEeCcHHH------------------HHHhCCEEEEEeCCeE
Confidence 556666666679999999998765 3445666666665544
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-12 Score=117.94 Aligned_cols=154 Identities=23% Similarity=0.268 Sum_probs=94.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLVD-- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-- 129 (366)
+++|++++|.||||||||||++.+++...+..|. +++++.... + ..+.+.++|.+|+..++.. ++.+.+....
T Consensus 26 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~ 103 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ-ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN 103 (229)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE-EEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCC
Confidence 6799999999999999999999999998887786 666664332 1 2445678999988765543 4444432210
Q ss_pred -------HHHhcCCce----EE--EEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 130 -------TLIRSGSVD----VV--VVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 130 -------~~~~~~~~~----lv--viDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
......... .+ -++....-. ...+++ |++++...+|+++.. +..
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~LS~--G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~ 180 (229)
T cd03254 104 ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGEN-GGNLSQ--GERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQE 180 (229)
T ss_pred CCHHHHHHHHHHhChHHHHHhCcccccCHhhcC-CCcCCH--HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 000000000 00 001000000 133443 778888888877654 555
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+...+. .+.|||+++|.... +. .||+++.|.++.+..
T Consensus 181 ~l~~~~-~~~tii~~sh~~~~------------------~~-~~d~i~~l~~g~~~~ 217 (229)
T cd03254 181 ALEKLM-KGRTSIIIAHRLST------------------IK-NADKILVLDDGKIIE 217 (229)
T ss_pred HHHHhc-CCCEEEEEecCHHH------------------Hh-hCCEEEEEeCCeEEE
Confidence 555554 48999999997654 33 378888888766543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.3e-12 Score=116.67 Aligned_cols=150 Identities=15% Similarity=0.192 Sum_probs=94.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++.+.+ ..|. +++++..... ..+...+++.+|+..++.. ++.+.
T Consensus 43 i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~n 120 (274)
T PRK14265 43 IPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGR-LLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYEN 120 (274)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCce-EEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHH
Confidence 679999999999999999999999988753 3565 5667654321 2345679999998776653 66665
Q ss_pred HHHHHHHH------h---cCCceEEEE-ecccccC--CCCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 125 LSLVDTLI------R---SGSVDVVVV-DSVAALV--PKGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 125 l~~~~~~~------~---~~~~~lvvi-Dsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
+....... . ......+-+ +.+.... +...+++ |++|+...||+++..
T Consensus 121 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg--Gq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~ 198 (274)
T PRK14265 121 IAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSG--GQQQRLCIARAIAMKPDVLLMDEPCSALDPISTR 198 (274)
T ss_pred HHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCH--HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHH
Confidence 54321100 0 000000000 0011111 1233444 888888888887764
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEE
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIK 227 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~ 227 (366)
+.++...+++ ++|||+++|.... +..+||+++.|.
T Consensus 199 ~l~~~L~~~~~-~~tiii~sH~~~~------------------~~~~~d~i~~l~ 234 (274)
T PRK14265 199 QVEELCLELKE-QYTIIMVTHNMQQ------------------ASRVADWTAFFN 234 (274)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHHH------------------HHHhCCEEEEEe
Confidence 5555555544 6899999997764 566789999887
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.9e-12 Score=127.92 Aligned_cols=158 Identities=15% Similarity=0.136 Sum_probs=102.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe-CCCC-----CC----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID-AEHA-----LD----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id-~e~~-----~~----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+||||||||||++.+++...+..|.+ +++ +... .. ..+.+.++|.+|+..++...++.+.
T Consensus 307 i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i-~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~ 385 (520)
T TIGR03269 307 VKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEV-NVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDN 385 (520)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHH
Confidence 78999999999999999999999999988777874 553 3211 11 1234569999998877777788777
Q ss_pred HHHHHHH-Hhc----CC----ceEEEEec-----ccccCCCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTL-IRS----GS----VDVVVVDS-----VAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~-~~~----~~----~~lvviDs-----l~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+.....+ ... .. ...+-++. .... +...+++ |++|+...||+++..
T Consensus 386 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-~~~~LSg--Gq~qrv~laral~~~p~lLllDEPt~~LD~~~ 462 (520)
T TIGR03269 386 LTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDK-YPDELSE--GERHRVALAQVLIKEPRIVILDEPTGTMDPIT 462 (520)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhC-ChhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 6542110 000 00 01111111 1111 1234554 888888888887654
Q ss_pred ---HHHHHHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+. +.+.|||+++|.... +..+||+++.|+++.++..
T Consensus 463 ~~~l~~~l~~l~~~~g~tvi~vsHd~~~------------------~~~~~d~i~~l~~G~i~~~ 509 (520)
T TIGR03269 463 KVDVTHSILKAREEMEQTFIIVSHDMDF------------------VLDVCDRAALMRDGKIVKI 509 (520)
T ss_pred HHHHHHHHHHHHHHcCcEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEE
Confidence 555555444 459999999998765 5567899999987765444
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.9e-12 Score=129.36 Aligned_cols=157 Identities=18% Similarity=0.245 Sum_probs=101.2
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCCCCC--C--HHHHhhcccccCcc---eecCCCCHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHAL--D--PSLAETIGVKTENL---LLAQPDCGEQAL 125 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e~~~--~--~~~~~~ig~~~~~~---~~~~~~~~e~~l 125 (366)
-+++|++++|+|+||||||||++.+++...+ .+|. +++++.... . ..+...+++.+|+. .++...++.+.+
T Consensus 284 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l 362 (506)
T PRK13549 284 SLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGE-IFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNI 362 (506)
T ss_pred EEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcE-EEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHh
Confidence 3789999999999999999999999998873 6776 566554321 1 12345689999885 345556776665
Q ss_pred HHHH--HHHh----cC-----C----ceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 126 SLVD--TLIR----SG-----S----VDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 126 ~~~~--~~~~----~~-----~----~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
.+.. .+.. .. . ...+-++ ..... +...+++ |++|+...||+++..
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LSg--G~kqrv~lA~al~~~p~lllLDEPt~~LD~~ 439 (506)
T PRK13549 363 TLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPEL-AIARLSG--GNQQKAVLAKCLLLNPKILILDEPTRGIDVG 439 (506)
T ss_pred hhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccc-ccccCCH--HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHh
Confidence 4311 0000 00 0 0011111 01111 1234554 888888888887754
Q ss_pred ----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 174 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 174 ----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
+.++...+++.|+|||+++|..+. +..+||+++.|.+++++
T Consensus 440 ~~~~l~~~l~~l~~~g~tvi~~sHd~~~------------------~~~~~d~v~~l~~G~i~ 484 (506)
T PRK13549 440 AKYEIYKLINQLVQQGVAIIVISSELPE------------------VLGLSDRVLVMHEGKLK 484 (506)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCHHH------------------HHHhCCEEEEEECCEEE
Confidence 666666666679999999998765 56678999988876544
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.2e-12 Score=117.68 Aligned_cols=157 Identities=12% Similarity=0.120 Sum_probs=99.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEeCCCCC-----CHHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~-----~~gg~vl~id~e~~~-----~~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
|++|++++|+|+||||||||++.+++.+. +..|. +++++.... ...+.+.+++.+|+..++. .++.+.
T Consensus 47 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 124 (271)
T PRK14238 47 IHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGK-ILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDN 124 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCcee-EEECCEEcccccccHHHHhhhEEEEecCCcccc-ccHHHH
Confidence 67999999999999999999999999876 35666 556654331 1244567999999877665 377666
Q ss_pred HHHHHHHHhcCC-----------ceEE-EEecccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSGS-----------VDVV-VVDSVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~~-----------~~lv-viDsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+........... .+.. ..+.+.... +...+++ |++|+...+|+++..
T Consensus 125 i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSg--Ge~qrv~laraL~~~p~lllLDEPt~~LD~~~ 202 (271)
T PRK14238 125 VTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSG--GQQQRLCIARCLAIEPDVILMDEPTSALDPIS 202 (271)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCH--HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHH
Confidence 543221100000 0000 001111111 1233444 888888888887653
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+ +.|||+++|.... +..+||+++.|.++.+...
T Consensus 203 ~~~l~~~l~~~~~-~~tiiivsH~~~~------------------i~~~~d~i~~l~~G~i~~~ 247 (271)
T PRK14238 203 TLKVEELVQELKK-DYSIIIVTHNMQQ------------------AARISDKTAFFLNGYVNEY 247 (271)
T ss_pred HHHHHHHHHHHHc-CCEEEEEEcCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 5555555544 7999999997654 5567899999987765443
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=9e-12 Score=115.20 Aligned_cols=158 Identities=17% Similarity=0.183 Sum_probs=100.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-----gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+.+|++++|+|+||||||||++.+++.+.+. .|. ++++++... . ..+...+++.+|+..++...++.+.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~en 105 (252)
T PRK14272 27 VQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGR-ILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDN 105 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCcee-EEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHH
Confidence 6799999999999999999999999987653 465 666665432 1 2445679999999877777777776
Q ss_pred HHHHHHHHhc-CC----------ceEEE-EecccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRS-GS----------VDVVV-VDSVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~-~~----------~~lvv-iDsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+......... .. ...+- .+.+.... +...+++ |++++...||++...
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~--G~~qrv~laral~~~p~llllDEP~~~LD~~~ 183 (252)
T PRK14272 106 VVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSG--GQQQRLCIARALAVEPEILLMDEPTSALDPAS 183 (252)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 6532211000 00 00000 00111111 1233444 788888888877653
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+.+.+++ ++|||+++|.... +..+||+++.|.++++...
T Consensus 184 ~~~l~~~l~~~~~-~~tiii~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14272 184 TARIEDLMTDLKK-VTTIIIVTHNMHQ------------------AARVSDTTSFFLVGDLVEH 228 (252)
T ss_pred HHHHHHHHHHHhc-CCeEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 4455555543 6999999997654 5567899999987765443
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.1e-12 Score=122.18 Aligned_cols=160 Identities=15% Similarity=0.141 Sum_probs=100.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh----cCCeEEEEeCCCCCC---HHH----HhhcccccCcce--ecCCCCH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR----QGGYCVFIDAEHALD---PSL----AETIGVKTENLL--LAQPDCG 121 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~----~gg~vl~id~e~~~~---~~~----~~~ig~~~~~~~--~~~~~~~ 121 (366)
|.+|++++|+|+||||||||++.+++...+ ..|. +++++..... ..+ .+.+++.+|+.. +.+..++
T Consensus 30 i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv 108 (330)
T PRK15093 30 LTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADR-MRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERV 108 (330)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceE-EEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccH
Confidence 679999999999999999999999998752 4565 5667654322 122 236899999875 3344555
Q ss_pred HHHHHH-HHHHHhc---------------CCceEEEEecc---cccCCCCccCCccchhhHHHHHHHHHHH---------
Q 017792 122 EQALSL-VDTLIRS---------------GSVDVVVVDSV---AALVPKGELDGEMGDAHMAMQARLMSQA--------- 173 (366)
Q Consensus 122 e~~l~~-~~~~~~~---------------~~~~lvviDsl---~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------- 173 (366)
.+.+.. +...... .-...+-++.. ..-. ..++++ |++|+...||+++..
T Consensus 109 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~-p~~LSg--G~~QRv~iArAL~~~P~llilDEP 185 (330)
T PRK15093 109 GRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF-PYELTE--GECQKVMIAIALANQPRLLIADEP 185 (330)
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC-chhCCH--HHHHHHHHHHHHHCCCCEEEEeCC
Confidence 554432 1100000 00011111111 1111 134554 888888888887654
Q ss_pred -----------HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 -----------LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 -----------L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++...+++ .|+|||+|+|.... +..+||+++.|.++.++..+.
T Consensus 186 ts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~------------------v~~~~dri~vm~~G~ive~g~ 242 (330)
T PRK15093 186 TNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQM------------------LSQWADKINVLYCGQTVETAP 242 (330)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH------------------HHHhCCEEEEEECCEEEEECC
Confidence 5555555554 59999999997764 556789999998887766543
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.2e-12 Score=115.49 Aligned_cols=157 Identities=13% Similarity=0.111 Sum_probs=98.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh--h---cCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ--R---QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~--~---~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++... + ..|. ++++++... . ..+.+.+++.+|+..++. .++.+.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 105 (252)
T PRK14239 28 FYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGS-IVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYEN 105 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccce-EEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHH
Confidence 67999999999999999999999998743 4 2565 566665431 1 234567999999887765 677776
Q ss_pred HHHHHHHHhcCC-----------ceEEEEe-cccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSGS-----------VDVVVVD-SVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~~-----------~~lvviD-sl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+........... .+.+-+. .+.... ....+++ |++++...||+++..
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~ 183 (252)
T PRK14239 106 VVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSG--GQQQRVCIARVLATSPKIILLDEPTSALDPIS 183 (252)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCH--HHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 654321100000 0000000 000111 1133444 888888888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+.+ +.|||+++|.... +..+||+++.|.++.+...
T Consensus 184 ~~~l~~~l~~~~~-~~tii~~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14239 184 AGKIEETLLGLKD-DYTMLLVTRSMQQ------------------ASRISDRTGFFLDGDLIEY 228 (252)
T ss_pred HHHHHHHHHHHhh-CCeEEEEECCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 5555555543 6899999997654 5567899999987765443
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-11 Score=114.58 Aligned_cols=160 Identities=20% Similarity=0.251 Sum_probs=95.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHH--HhhcCCeEEEEeCCCCCC--H-HHHh-hcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAE--AQRQGGYCVFIDAEHALD--P-SLAE-TIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~--~~~~gg~vl~id~e~~~~--~-~~~~-~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+|+||||||||++.+++. +.+..|. +++++..... . .+.+ .+++.+|+..++...+..+.+...
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~ 108 (252)
T CHL00131 30 INKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGD-ILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLA 108 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCce-EEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHh
Confidence 779999999999999999999999886 3455676 5666553321 2 2222 366777877666656666654432
Q ss_pred HHHHhc----CC-------------ceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 129 DTLIRS----GS-------------VDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 129 ~~~~~~----~~-------------~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
...... .. ...+-+. ......+...+++ |++++...||+++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg--G~~qrv~la~al~~~p~llllDEPt~~LD~~~ 186 (252)
T CHL00131 109 YNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSG--GEKKRNEILQMALLDSELAILDETDSGLDIDA 186 (252)
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCH--HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence 110000 00 0000010 0000111112444 788888888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeee-ceEEEEEEEeceeecC
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFY-ASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~-ad~~i~l~~~~~~~~~ 235 (366)
+.++...+.+.+.|||+++|.... +..+ ||+++.|.++.++..+
T Consensus 187 ~~~l~~~l~~~~~~g~tii~~tH~~~~------------------~~~~~~d~i~~l~~G~i~~~~ 234 (252)
T CHL00131 187 LKIIAEGINKLMTSENSIILITHYQRL------------------LDYIKPDYVHVMQNGKIIKTG 234 (252)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHH------------------HHhhhCCEEEEEeCCEEEEec
Confidence 556555555568999999997654 3333 6888888877655444
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.2e-12 Score=116.57 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=98.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++.+.+ ..|. +++++.... . ..+.+.+++.+|+..++.. ++.+.
T Consensus 48 i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~-i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~en 125 (272)
T PRK14236 48 IPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGE-IRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYEN 125 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceE-EEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHH
Confidence 779999999999999999999999998763 4666 566665432 1 2345678999998776654 77766
Q ss_pred HHHHHHHHhcCC-----------ceEEEE-ecccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSGS-----------VDVVVV-DSVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~~-----------~~lvvi-Dsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+........... .+.+-+ +.+.... ....+++ |++|+...||++...
T Consensus 126 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~--Gq~qrv~laral~~~p~lllLDEPt~gLD~~~ 203 (272)
T PRK14236 126 VVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSG--GQQQRLVIARAIAIEPEVLLLDEPTSALDPIS 203 (272)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCH--HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHH
Confidence 643211100000 000000 0000111 1123443 788888888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+++ +.|||+++|..+. +..+||+++.|.++++...
T Consensus 204 ~~~l~~~L~~~~~-~~tiiivtH~~~~------------------~~~~~d~i~~l~~G~i~~~ 248 (272)
T PRK14236 204 TLKIEELITELKS-KYTIVIVTHNMQQ------------------AARVSDYTAFMYMGKLVEY 248 (272)
T ss_pred HHHHHHHHHHHHh-CCeEEEEeCCHHH------------------HHhhCCEEEEEECCEEEec
Confidence 5555555554 6899999997654 4557899999987765443
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-11 Score=125.77 Aligned_cols=152 Identities=14% Similarity=0.114 Sum_probs=94.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCccee--c-C-----CCCHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLL--A-Q-----PDCGEQ 123 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~--~-~-----~~~~e~ 123 (366)
+++|++++|+||||||||||++.+++.+.+..|.+ ++++.... . ..+.+.+++.+|+..+ . . ..++.+
T Consensus 26 i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i-~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~ 104 (490)
T PRK10938 26 LNAGDSWAFVGANGSGKSALARALAGELPLLSGER-QSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAE 104 (490)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceE-EECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHH
Confidence 67999999999999999999999999888877874 55554322 2 2344568988886432 1 1 234444
Q ss_pred HHH-------HHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 124 ALS-------LVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 124 ~l~-------~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
.+. .+..++... -++...... ...+++ |++|+...|++++.. +.+
T Consensus 105 ~~~~~~~~~~~~~~~l~~~-----~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 176 (490)
T PRK10938 105 IIQDEVKDPARCEQLAQQF-----GITALLDRR-FKYLST--GETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAE 176 (490)
T ss_pred hcccchhHHHHHHHHHHHc-----CCHhhhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 321 122222211 112221111 245555 888888888887654 555
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+...+++.|.|||+++|.... +..+||+++.|+++.++.
T Consensus 177 ~l~~~~~~g~tvii~tH~~~~------------------~~~~~d~v~~l~~G~i~~ 215 (490)
T PRK10938 177 LLASLHQSGITLVLVLNRFDE------------------IPDFVQFAGVLADCTLAE 215 (490)
T ss_pred HHHHHHhcCCeEEEEeCCHHH------------------HHhhCCEEEEEECCEEEE
Confidence 555555668999999998765 344566666666554433
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.9e-12 Score=112.63 Aligned_cols=139 Identities=22% Similarity=0.276 Sum_probs=88.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
+++|++++|+|+||||||||+..+++...+..|. ++++++......+.+.+++.++...+....++.+.+.........
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~ 103 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGT-IKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGG 103 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCC
Confidence 6799999999999999999999999988887787 556665432222556788888776666666777766543221100
Q ss_pred CC------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhhcCcEE
Q 017792 135 GS------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSLSQTIL 188 (366)
Q Consensus 135 ~~------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~~~~tV 188 (366)
.. ...+-+...... +...+++ |++++...+|++... +..+...+++.++||
T Consensus 104 ~~~~~~~~l~~~~l~~~~~~-~~~~LS~--G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti 180 (207)
T PRK13539 104 EELDIAAALEAVGLAPLAHL-PFGYLSA--GQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIV 180 (207)
T ss_pred cHHHHHHHHHHcCCHHHHcC-ChhhcCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 00 000001111111 1223443 778888888877653 555555555569999
Q ss_pred EEEecCCcc
Q 017792 189 IFINQVRAK 197 (366)
Q Consensus 189 I~i~h~~~~ 197 (366)
|+++|..+.
T Consensus 181 ii~sH~~~~ 189 (207)
T PRK13539 181 IAATHIPLG 189 (207)
T ss_pred EEEeCCchh
Confidence 999998765
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.1e-12 Score=116.23 Aligned_cols=158 Identities=17% Similarity=0.197 Sum_probs=98.9
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQ 123 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~ 123 (366)
-+++|++++|+|+||||||||++.+++...+ ..|. +++++..... ..+.+.+++.+|+..++. .++.+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~-i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e 102 (250)
T PRK14262 25 KIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGK-IYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYD 102 (250)
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceE-EEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHH
Confidence 3679999999999999999999999988763 4565 6677654321 234567999999877665 67766
Q ss_pred HHHHHHHHHhcCC-----------ceEEEEe-cccccC--CCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 124 ALSLVDTLIRSGS-----------VDVVVVD-SVAALV--PKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 124 ~l~~~~~~~~~~~-----------~~lvviD-sl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
.+........... .+.+-++ .+.... ....+++ |++|+...+|+++..
T Consensus 103 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~--Gq~qr~~la~al~~~p~llllDEP~~~LD~~ 180 (250)
T PRK14262 103 NVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSG--GQQQRLCIARALAVEPEVILLDEPTSALDPI 180 (250)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCH--HHHHHHHHHHHHhCCCCEEEEeCCccccCHH
Confidence 6654221100000 0000010 000111 1123443 788888888877654
Q ss_pred ----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+ +.|||+++|..+. +..+||+++.|+++++...
T Consensus 181 ~~~~l~~~l~~~~~-~~tili~sH~~~~------------------~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14262 181 ATQRIEKLLEELSE-NYTIVIVTHNIGQ------------------AIRIADYIAFMYRGELIEY 226 (250)
T ss_pred HHHHHHHHHHHHhc-CcEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 5555555444 6899999997654 4567899999887765443
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-11 Score=117.18 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=98.3
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHh--h---cCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ--R---QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ 123 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~--~---~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~ 123 (366)
-|.+|++++|+|+||||||||++.+++... + ..|. +++++.... . ..+.+.++|.+|+..++. .++.+
T Consensus 61 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~-I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~e 138 (286)
T PRK14275 61 DILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGA-LMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFP-KSIFD 138 (286)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceE-EEECCEEhhhcccchHHhhhcEEEECCCCCCCc-cCHHH
Confidence 377999999999999999999999999754 3 5665 566665432 1 234567999999877665 37777
Q ss_pred HHHHHHHHHhcCC-----------ceEEEE-ecccccC--CCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 124 ALSLVDTLIRSGS-----------VDVVVV-DSVAALV--PKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 124 ~l~~~~~~~~~~~-----------~~lvvi-Dsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
.+.+......... ...+-+ +.+.... ....+++ |++|+...||+++..
T Consensus 139 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg--Gq~qrv~LAraL~~~p~lllLDEPt~gLD~~ 216 (286)
T PRK14275 139 NIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSG--GQQQRLCVARTLAVEPEILLLDEPTSALDPK 216 (286)
T ss_pred HHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 6654321100000 000000 0011111 1133444 788888888887654
Q ss_pred ----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.. +.+||+++|.... +..+||+++.|+++.+...
T Consensus 217 ~~~~l~~~L~~~~~-~~tvIivsH~~~~------------------~~~~~d~i~~L~~G~i~~~ 262 (286)
T PRK14275 217 ATAKIEDLIQELRG-SYTIMIVTHNMQQ------------------ASRVSDYTMFFYEGVLVEH 262 (286)
T ss_pred HHHHHHHHHHHHhc-CCeEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 4455544443 6899999997654 4567899999987665443
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.9e-12 Score=128.42 Aligned_cols=156 Identities=18% Similarity=0.234 Sum_probs=100.8
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C--HHHHhhcccccCcc---eecCCCCHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D--PSLAETIGVKTENL---LLAQPDCGEQALS 126 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~--~~~~~~ig~~~~~~---~~~~~~~~e~~l~ 126 (366)
-+++|++++|+||||||||||++.+++...+..|. +++++.... . ..+.+.+||.+|+. .++...++.+.+.
T Consensus 274 ~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~-I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~ 352 (501)
T PRK10762 274 TLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGY-VTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMS 352 (501)
T ss_pred EEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceE-EEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhh
Confidence 36799999999999999999999999988877776 566654321 2 12345699999985 3555667776654
Q ss_pred HHH-HHHhc-----------CC----ceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 127 LVD-TLIRS-----------GS----VDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 127 ~~~-~~~~~-----------~~----~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
... ..... .. ...+-+. ....- +...+++ |++|+...||+++..
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LSg--Gekqrv~lA~al~~~p~lllLDEPt~~LD~~ 429 (501)
T PRK10762 353 LTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQ-AIGLLSG--GNQQKVAIARGLMTRPKVLILDEPTRGVDVG 429 (501)
T ss_pred hhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccC-chhhCCH--HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHh
Confidence 311 00000 00 0111111 11111 1234444 888888888887654
Q ss_pred ----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 174 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 174 ----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+.++...+.+.|.|||+++|..+. +..+||+++.|.++.+
T Consensus 430 ~~~~l~~~l~~~~~~g~tviivtHd~~~------------------~~~~~d~v~~l~~G~i 473 (501)
T PRK10762 430 AKKEIYQLINQFKAEGLSIILVSSEMPE------------------VLGMSDRILVMHEGRI 473 (501)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCHHH------------------HHhhCCEEEEEECCEE
Confidence 556666666669999999997764 5567899988887654
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.6e-12 Score=115.82 Aligned_cols=153 Identities=20% Similarity=0.166 Sum_probs=95.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC-----CCC--H-H----HHhhcccccCcce--ecCCCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH-----ALD--P-S----LAETIGVKTENLL--LAQPDC 120 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~-----~~~--~-~----~~~~ig~~~~~~~--~~~~~~ 120 (366)
+.+|++++|.|+||||||||++.+++.+.+..|. ++++++. ... . . +...+++.+|+.. +....+
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 107 (258)
T PRK11701 29 LYPGEVLGIVGESGSGKTTLLNALSARLAPDAGE-VHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVS 107 (258)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE-EEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCcccc
Confidence 7799999999999999999999999998888887 5666654 221 1 1 2345899988763 223333
Q ss_pred HHHHHHH----------------HHHHHhcCCceEEEEec-ccccCCCCccCCccchhhHHHHHHHHHHH----------
Q 017792 121 GEQALSL----------------VDTLIRSGSVDVVVVDS-VAALVPKGELDGEMGDAHMAMQARLMSQA---------- 173 (366)
Q Consensus 121 ~e~~l~~----------------~~~~~~~~~~~lvviDs-l~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------- 173 (366)
+.+.+.. +..++.... ++. ...- +...+++ |++|+...||+++..
T Consensus 108 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~~LS~--Gq~qrl~laral~~~p~llllDEPt 179 (258)
T PRK11701 108 AGGNIGERLMAVGARHYGDIRATAGDWLERVE-----IDAARIDD-LPTTFSG--GMQQRLQIARNLVTHPRLVFMDEPT 179 (258)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHcC-----CChhHHhC-CCccCCH--HHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 3332211 111111111 110 1011 1234444 888888888887654
Q ss_pred ----------HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ----------LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ----------L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+.+ ++.|||+++|.... +..+||.++.|+++.++..
T Consensus 180 ~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~------------------~~~~~d~i~~l~~g~i~~~ 233 (258)
T PRK11701 180 GGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV------------------ARLLAHRLLVMKQGRVVES 233 (258)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH------------------HHHhcCEEEEEECCEEEEe
Confidence 4454444443 58999999997764 5567899999987765443
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.5e-12 Score=132.26 Aligned_cols=158 Identities=21% Similarity=0.261 Sum_probs=103.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHH----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSL---- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~---- 127 (366)
+++|+.++|+|++|||||||++.+++.+.+..|. +++|+.+..+ ..+++.+++++|+..++.. |+.+++..
T Consensus 476 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~-I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~~ 553 (686)
T TIGR03797 476 IEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGS-VFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAPL 553 (686)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE-EEECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCCC
Confidence 7899999999999999999999999999998887 6777765432 4678889999998877643 34333321
Q ss_pred ----HHHHHhcCCceEE---EEecccccCCC--CccCCccchhhHHHHHHHHHHH-----------------HHHHHHHh
Q 017792 128 ----VDTLIRSGSVDVV---VVDSVAALVPK--GELDGEMGDAHMAMQARLMSQA-----------------LRKLSHSL 181 (366)
Q Consensus 128 ----~~~~~~~~~~~lv---viDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~l 181 (366)
+...++.-...-. .-+.+...... ..+++ |++|+...||++.+. -+.+...+
T Consensus 554 ~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSG--GQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L 631 (686)
T TIGR03797 554 TLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSG--GQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESL 631 (686)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH--HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 1111111011000 00111122211 23444 899999999988764 23444445
Q ss_pred hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 182 ~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
++.++|+|+++|..+. +. .||+++.|++++++..|
T Consensus 632 ~~~~~T~IiItHr~~~------------------i~-~~D~Iivl~~G~iv~~G 666 (686)
T TIGR03797 632 ERLKVTRIVIAHRLST------------------IR-NADRIYVLDAGRVVQQG 666 (686)
T ss_pred HHhCCeEEEEecChHH------------------HH-cCCEEEEEECCEEEEEC
Confidence 5557999999996543 33 38999999887665554
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-11 Score=115.54 Aligned_cols=150 Identities=16% Similarity=0.183 Sum_probs=94.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++...+ ..|. +++++.... . ..+.+.+++.+|+..++. .++.+.
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 110 (264)
T PRK14243 33 IPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGK-VTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDN 110 (264)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceE-EEECCEEccccccChHHHhhhEEEEccCCcccc-ccHHHH
Confidence 679999999999999999999999987652 4565 567765431 1 244567999999876665 366665
Q ss_pred HHHHHHHHh-----cCC----ceEEE-EecccccC--CCCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 125 LSLVDTLIR-----SGS----VDVVV-VDSVAALV--PKGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 125 l~~~~~~~~-----~~~----~~lvv-iDsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
+........ ... ...+- .+.+.... ....+++ |++|+...||+++..
T Consensus 111 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg--Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 188 (264)
T PRK14243 111 IAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSG--GQQQRLCIARAIAVQPEVILMDEPCSALDPISTL 188 (264)
T ss_pred HHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 543211000 000 00000 00011111 1223444 888888888887653
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEE
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIK 227 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~ 227 (366)
+..+...+.+ +.|||+++|.... +..+||+++.|+
T Consensus 189 ~l~~~L~~~~~-~~tvi~vtH~~~~------------------~~~~~d~v~~l~ 224 (264)
T PRK14243 189 RIEELMHELKE-QYTIIIVTHNMQQ------------------AARVSDMTAFFN 224 (264)
T ss_pred HHHHHHHHHhc-CCEEEEEecCHHH------------------HHHhCCEEEEEe
Confidence 5555555544 5899999997654 567889999987
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.8e-12 Score=106.57 Aligned_cols=156 Identities=17% Similarity=0.243 Sum_probs=105.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC------------CC----HHHHhhcccccCcceecCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA------------LD----PSLAETIGVKTENLLLAQP 118 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~------------~~----~~~~~~ig~~~~~~~~~~~ 118 (366)
-..|+++.|+|.+|||||||++++.-+-.+..|. +.+++|+. .+ +.++.++|+++|++.++..
T Consensus 29 A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~-I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsH 107 (256)
T COG4598 29 ANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGS-IRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSH 107 (256)
T ss_pred cCCCCEEEEecCCCCchhHHHHHHHhhcCCCCce-EEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHH
Confidence 3579999999999999999988776665665554 67777642 11 1346678999999987766
Q ss_pred CCHHHH----------------HHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH---------
Q 017792 119 DCGEQA----------------LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------- 173 (366)
Q Consensus 119 ~~~e~~----------------l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------- 173 (366)
.|+-++ ++....++. .+-++.-...+| ..+++ |++|+..+||+++..
T Consensus 108 mtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~-----kVGi~ek~~~YP-~~LSG--GQQQR~aIARaLameP~vmLFDEP 179 (256)
T COG4598 108 MTVLENVIEAPVHVLGVSKAEAIERAEKYLA-----KVGIAEKADAYP-AHLSG--GQQQRVAIARALAMEPEVMLFDEP 179 (256)
T ss_pred HHHHHHHHhcchHhhcCCHHHHHHHHHHHHH-----HhCchhhhhcCc-cccCc--hHHHHHHHHHHHhcCCceEeecCC
Confidence 554332 333333322 122333333443 56666 899999999988653
Q ss_pred -----------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCcc
Q 017792 174 -----------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEE 237 (366)
Q Consensus 174 -----------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~ 237 (366)
+.++...|.+.|.|+++++|.+. | ..+.++.+++|.++.+..+|.+
T Consensus 180 TSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~------F------------AR~Vss~v~fLh~G~iEE~G~P 236 (256)
T COG4598 180 TSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG------F------------ARDVSSHVIFLHQGKIEEEGPP 236 (256)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh------H------------HHhhhhheEEeecceecccCCh
Confidence 45556666778999999999664 2 3346788999999876666543
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.2e-12 Score=118.91 Aligned_cols=150 Identities=18% Similarity=0.170 Sum_probs=96.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
|++|++++|+|+||||||||++.+++.+. ..|. +++++..... ..+.+.+++.+|+..+++. ++.+.+...
T Consensus 27 I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~-I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~~ 103 (275)
T cd03289 27 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD-IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYGKW 103 (275)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcE-EEECCEEhhhCCHHHHhhhEEEECCCcccchh-hHHHHhhhccCC
Confidence 67999999999999999999999999987 6665 6788765422 3556789999998876643 555544211
Q ss_pred -----HHHHhcCCceEEEEecccccCC----------CCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 129 -----DTLIRSGSVDVVVVDSVAALVP----------KGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 129 -----~~~~~~~~~~lvviDsl~~l~~----------~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
...+.. +-++....-+| ...+++ |++|+...+|+++..
T Consensus 104 ~~~~~~~~l~~-----~gL~~~~~~~p~~l~~~~~~~g~~LS~--G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~ 176 (275)
T cd03289 104 SDEEIWKVAEE-----VGLKSVIEQFPGQLDFVLVDGGCVLSH--GHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176 (275)
T ss_pred CHHHHHHHHHH-----cCCHHHHHhCcccccceecCCCCCCCH--HHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHH
Confidence 111111 11111111111 112333 788888888887654
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+. .++|||+++|..+. +. .||+++.|+++.++..
T Consensus 177 l~~~l~~~~-~~~tii~isH~~~~------------------i~-~~dri~vl~~G~i~~~ 217 (275)
T cd03289 177 IRKTLKQAF-ADCTVILSEHRIEA------------------ML-ECQRFLVIEENKVRQY 217 (275)
T ss_pred HHHHHHHhc-CCCEEEEEECCHHH------------------HH-hCCEEEEecCCeEeec
Confidence 444444433 48999999997643 33 3888888887654433
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-11 Score=114.57 Aligned_cols=158 Identities=16% Similarity=0.152 Sum_probs=100.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEeCCCCC---C-HHHHhhcccccCcceecCCCCHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHAL---D-PSLAETIGVKTENLLLAQPDCGEQAL 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-----gg~vl~id~e~~~---~-~~~~~~ig~~~~~~~~~~~~~~e~~l 125 (366)
+.+|++++|.|+||||||||++.+++...+. .|. +++++.... + ..+.+.++|.+|+..++. .++.+.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l 103 (249)
T PRK14253 26 IPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGK-LTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENV 103 (249)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceE-EEECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHH
Confidence 6799999999999999999999999987652 455 566665432 1 244567999999877665 6776665
Q ss_pred HHHHHHHhcC-C----------ceEEEE-ecccccC--CCCccCCccchhhHHHHHHHHHHH------------------
Q 017792 126 SLVDTLIRSG-S----------VDVVVV-DSVAALV--PKGELDGEMGDAHMAMQARLMSQA------------------ 173 (366)
Q Consensus 126 ~~~~~~~~~~-~----------~~lvvi-Dsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~------------------ 173 (366)
.......... . ...+-+ +.+.... +...+++ |++++...||+++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~--G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 181 (249)
T PRK14253 104 AYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSG--GQQQRLCIARTIAMEPDVILMDEPTSALDPIAT 181 (249)
T ss_pred HhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCH--HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHH
Confidence 4322110000 0 000000 0010111 1133444 888888888887653
Q ss_pred --HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 --LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 --L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.++...+.+ +.|||+++|.... +..+||+++.|.++.+...+
T Consensus 182 ~~l~~~l~~~~~-~~tii~~sh~~~~------------------~~~~~d~i~~l~~G~i~~~g 226 (249)
T PRK14253 182 HKIEELMEELKK-NYTIVIVTHSMQQ------------------ARRISDRTAFFLMGELVEHD 226 (249)
T ss_pred HHHHHHHHHHhc-CCeEEEEecCHHH------------------HHHhCCEEEEEECCEEEEeC
Confidence 5555555554 5899999997654 56678999999877655443
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.29 E-value=9e-12 Score=112.89 Aligned_cols=149 Identities=17% Similarity=0.189 Sum_probs=93.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
+++|++++|+|+||||||||++.+++...+..|. ++++++... . ..+.+.+++.+|+..++. .++.+.+...
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~ 104 (221)
T cd03244 27 IKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS-ILIDGVDISKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFGEY 104 (221)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCE-EEECCEEhHhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCCCC
Confidence 7799999999999999999999999988888887 556655332 1 345667899998876554 3555443211
Q ss_pred -----HHHHhcCCceEEEEec-cc-------cc--CCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 129 -----DTLIRSGSVDVVVVDS-VA-------AL--VPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 129 -----~~~~~~~~~~lvviDs-l~-------~l--~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
...+.... ++. +. .. .....+++ |++|+...+|+++..
T Consensus 105 ~~~~~~~~~~~~~-----l~~~~~~l~~~l~~~~~~~~~~LS~--G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~ 177 (221)
T cd03244 105 SDEELWQALERVG-----LKEFVESLPGGLDTVVEEGGENLSV--GQRQLLCLARALLRKSKILVLDEATASVDPETDAL 177 (221)
T ss_pred CHHHHHHHHHHhC-----cHHHHHhcccccccccccCCCcCCH--HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHH
Confidence 11100000 111 10 00 01233443 778888888877653
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
+.++...+. .+.|||+++|.... +.. ||.++.|.++.+.
T Consensus 178 l~~~l~~~~-~~~tii~~sh~~~~------------------~~~-~d~i~~l~~g~~~ 216 (221)
T cd03244 178 IQKTIREAF-KDCTVLTIAHRLDT------------------IID-SDRILVLDKGRVV 216 (221)
T ss_pred HHHHHHHhc-CCCEEEEEeCCHHH------------------Hhh-CCEEEEEECCeEE
Confidence 444444443 36899999997654 333 7888888776543
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.9e-12 Score=111.46 Aligned_cols=137 Identities=18% Similarity=0.201 Sum_probs=85.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C---HHHHhhcccccCcce--ecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D---PSLAETIGVKTENLL--LAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~---~~~~~~ig~~~~~~~--~~~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++...+..|. +++++.... . ..+.+.+++.+|+.. ++ +.++.+.+.+
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~~tv~~nl~~ 92 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLLRPQSGA-VLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF-AADVDQDVAF 92 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcee-EEECCEEccccccchHHHHhhEEEEecChhhccc-cccHHHHHHH
Confidence 7799999999999999999999999988877776 556654331 1 234567899998862 33 3567666543
Q ss_pred HHHHHhc----------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~~----------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
....... .-...+-++...... ...+++ |++|+...+|+++.. +..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~ 169 (190)
T TIGR01166 93 GPLNLGLSEAEVERRVREALTAVGASGLRERP-THCLSG--GEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAI 169 (190)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCchhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 2110000 000111111111111 133444 788888888887654 5555
Q ss_pred HHHhhhcCcEEEEEecCCc
Q 017792 178 SHSLSLSQTILIFINQVRA 196 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~ 196 (366)
...+++.++|||+++|..+
T Consensus 170 l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 170 LRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred HHHHHHcCCEEEEEeeccc
Confidence 5555566899999999764
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-11 Score=114.43 Aligned_cols=155 Identities=13% Similarity=0.109 Sum_probs=99.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++...+ ..|. +++++..... ..+.+.+++.+|+..++. .++.+.
T Consensus 43 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 120 (267)
T PRK14237 43 FEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQ-ILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYEN 120 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceE-EEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHH
Confidence 679999999999999999999999998753 4666 5667654321 234567999999876655 477776
Q ss_pred HHHHHHH----------------HhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH---------------
Q 017792 125 LSLVDTL----------------IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------- 173 (366)
Q Consensus 125 l~~~~~~----------------~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------- 173 (366)
+...... +....... .++....- +...+++ |++|+...+|++...
T Consensus 121 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~i~~~~~~-~~~~LS~--G~~qrl~laral~~~p~lllLDEPt~~LD~ 196 (267)
T PRK14237 121 ITFALERAGVKDKKVLDEIVETSLKQAALWD-QVKDDLHK-SALTLSG--GQQQRLCIARAIAVKPDILLMDEPASALDP 196 (267)
T ss_pred HHhHHHhcCCCCHHHHHHHHHHHHHHcCCCc-hhhhhhcC-CcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 6542111 00000000 00111111 1234444 888888888887643
Q ss_pred -----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 -----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 -----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...++ .+.+||+++|.... +..+||+++.|..+.+...
T Consensus 197 ~~~~~l~~~l~~~~-~~~tiii~tH~~~~------------------~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 197 ISTMQLEETMFELK-KNYTIIIVTHNMQQ------------------AARASDYTAFFYLGDLIEY 243 (267)
T ss_pred HHHHHHHHHHHHHh-cCCEEEEEecCHHH------------------HHHhcCEEEEEECCEEEEe
Confidence 555555554 37899999997654 4557899999987765443
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-11 Score=106.36 Aligned_cols=125 Identities=20% Similarity=0.222 Sum_probs=83.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHH--HHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE--QALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e--~~l~~~~~~~ 132 (366)
+++|++++|+||||||||||++.+++.+.+.+|.+ ++++. .+++.+|+.. .+.- +-+.++..++
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~---------~i~~~~q~~~----LSgGq~qrv~laral~ 87 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND-EWDGI---------TPVYKPQYID----LSGGELQRVAIAAALL 87 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEE-EECCE---------EEEEEcccCC----CCHHHHHHHHHHHHHh
Confidence 68999999999999999999999999988888874 45542 2666666543 3332 3344444444
Q ss_pred hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccC
Q 017792 133 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCG 212 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~g 212 (366)
.+++++++|....-+.. ...+.+...++.+. ++.+.|||+++|....
T Consensus 88 --~~p~lllLDEPts~LD~-------------~~~~~l~~~l~~~~---~~~~~tiiivsH~~~~--------------- 134 (177)
T cd03222 88 --RNATFYLFDEPSAYLDI-------------EQRLNAARAIRRLS---EEGKKTALVVEHDLAV--------------- 134 (177)
T ss_pred --cCCCEEEEECCcccCCH-------------HHHHHHHHHHHHHH---HcCCCEEEEEECCHHH---------------
Confidence 36799999998766520 11222333344432 2334899999997754
Q ss_pred CceeeeeceEEEEEEEe
Q 017792 213 GNALKFYASVRLNIKRI 229 (366)
Q Consensus 213 G~~l~~~ad~~i~l~~~ 229 (366)
+..+||.++.|.+.
T Consensus 135 ---~~~~~d~i~~l~~~ 148 (177)
T cd03222 135 ---LDYLSDRIHVFEGE 148 (177)
T ss_pred ---HHHhCCEEEEEcCC
Confidence 45567888777643
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-11 Score=111.88 Aligned_cols=139 Identities=18% Similarity=0.168 Sum_probs=86.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC----CCC--C-HH----HHhhcccccCcceecCCCCHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE----HAL--D-PS----LAETIGVKTENLLLAQPDCGEQ 123 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e----~~~--~-~~----~~~~ig~~~~~~~~~~~~~~e~ 123 (366)
+++|++++|+|+||||||||++.+++.+.+..|.+ ++++. ... + .. +.+.+++.+|+..+....++.+
T Consensus 31 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 109 (224)
T TIGR02324 31 VNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRI-LVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALE 109 (224)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHH
Confidence 67999999999999999999999999988888874 55532 111 1 11 2346899999887777777776
Q ss_pred HHHHHHHHHhcC------C----ceEEEEec-ccccCCCCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 124 ALSLVDTLIRSG------S----VDVVVVDS-VAALVPKGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 124 ~l~~~~~~~~~~------~----~~lvviDs-l~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
.+.......... . ...+-++. +... +...+++ |++|+...+|++...
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LS~--G~~qrl~laral~~~p~llllDEPt~~LD~~~~~ 186 (224)
T TIGR02324 110 VVAEPLLERGVPREAARARARELLARLNIPERLWHL-PPATFSG--GEQQRVNIARGFIADYPILLLDEPTASLDAANRQ 186 (224)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhC-CcccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 654311100000 0 00000110 1111 1233443 788888888877653
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcc
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
+..+...+++.++|||+++|....
T Consensus 187 ~l~~~l~~~~~~g~tii~vsH~~~~ 211 (224)
T TIGR02324 187 VVVELIAEAKARGAALIGIFHDEEV 211 (224)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 555555555568999999997553
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.3e-12 Score=143.08 Aligned_cols=161 Identities=14% Similarity=0.148 Sum_probs=112.2
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
++++|++++|.|+||||||||++.+++...+..|. +++++..... ....+.+|+.+|...+....++.+.+.+...+
T Consensus 1961 ~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~-I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l 2039 (2272)
T TIGR01257 1961 GVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGD-ATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARL 2039 (2272)
T ss_pred EEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccE-EEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHh
Confidence 58899999999999999999999999999888887 5777654432 23456799999998888888998887754322
Q ss_pred HhcC--C--------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh
Q 017792 132 IRSG--S--------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 181 (366)
Q Consensus 132 ~~~~--~--------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l 181 (366)
.... . ...+-++...... ...+++ |++|+...|++++.. +.++...+
T Consensus 2040 ~g~~~~~~~~~v~~lLe~lgL~~~~dk~-~~~LSG--GqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l 2116 (2272)
T TIGR01257 2040 RGVPAEEIEKVANWSIQSLGLSLYADRL-AGTYSG--GNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSI 2116 (2272)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 1000 0 0001111111111 234444 777777777776543 66666666
Q ss_pred hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 182 ~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
++.|+|||+++|..++ ++.+||+++.|.+++++..|+
T Consensus 2117 ~~~g~TIILtTH~mee------------------~e~lcDrV~IL~~G~i~~~Gs 2153 (2272)
T TIGR01257 2117 IREGRAVVLTSHSMEE------------------CEALCTRLAIMVKGAFQCLGT 2153 (2272)
T ss_pred HhCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEECC
Confidence 6679999999998776 667899999999887766654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.2e-12 Score=113.60 Aligned_cols=147 Identities=17% Similarity=0.259 Sum_probs=94.3
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCc---ceecCC----CC----
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTEN---LLLAQP----DC---- 120 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~---~~~~~~----~~---- 120 (366)
-||+|++++++|+||+||||+++.+.+.+.+.+|. +-+.+-.+++ +.+.+++++++.+ +....| ..
T Consensus 46 ~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~-v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~ 124 (325)
T COG4586 46 EIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGK-VRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKL 124 (325)
T ss_pred ecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCe-EEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHH
Confidence 38999999999999999999999999999999887 5566666665 3556666655421 110000 00
Q ss_pred -----HHH---HHHHHHHH--------------------------HhcCCceEEEEecccccCCCCccCCccchhhHHHH
Q 017792 121 -----GEQ---ALSLVDTL--------------------------IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQ 166 (366)
Q Consensus 121 -----~e~---~l~~~~~~--------------------------~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ 166 (366)
..+ -+..+.+. .--+.++++++|..+--.. ..
T Consensus 125 Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLD--------------V~ 190 (325)
T COG4586 125 IYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLD--------------VN 190 (325)
T ss_pred HHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcc--------------hh
Confidence 000 01110000 0124577777887654331 11
Q ss_pred HHH-HHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 167 ARL-MSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 167 ar~-l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
|++ +..+++... .++++||++++|+..+ ++.+|++++.++.++.+.+|+
T Consensus 191 aq~~ir~Flke~n---~~~~aTVllTTH~~~d------------------i~~lc~rv~~I~~Gqlv~dg~ 240 (325)
T COG4586 191 AQANIREFLKEYN---EERQATVLLTTHIFDD------------------IATLCDRVLLIDQGQLVFDGT 240 (325)
T ss_pred HHHHHHHHHHHHH---HhhCceEEEEecchhh------------------HHHhhhheEEeeCCcEeeccc
Confidence 221 223333333 5689999999998765 778999999999999888764
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.4e-12 Score=119.49 Aligned_cols=159 Identities=15% Similarity=0.186 Sum_probs=102.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQ 123 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~ 123 (366)
-|++|++++|+|+||||||||+..+++.... ..|. +++++..... ..+...+++.+|.+.++. .++.+
T Consensus 104 ~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~-I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~e 181 (329)
T PRK14257 104 DIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGE-IYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFD 181 (329)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceE-EEECCEEccccccchHhhhccEEEEecCCccCC-CcHHH
Confidence 3789999999999999999999999988753 3565 6677765431 245667999999887664 56666
Q ss_pred HHHHHHHH------------HhcCCceEEEE-ecccccC--CCCccCCccchhhHHHHHHHHHHH---------------
Q 017792 124 ALSLVDTL------------IRSGSVDVVVV-DSVAALV--PKGELDGEMGDAHMAMQARLMSQA--------------- 173 (366)
Q Consensus 124 ~l~~~~~~------------~~~~~~~lvvi-Dsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~--------------- 173 (366)
.+.+.... ... ..+...+ +.+.... ....+++ |++|+...||++...
T Consensus 182 Ni~~~~~~~~~~~~~~~~~~~~~-~l~~~~L~~~l~~~~~~~~~~LSg--GqkqRl~LARAl~~~p~IlLLDEPts~LD~ 258 (329)
T PRK14257 182 NVAYGPRNNGINDRKILEKIVEK-SLKSAALWDEVKDDLDKAGNALSG--GQQQRLCIARAIALEPEVLLMDEPTSALDP 258 (329)
T ss_pred HHHhHHHhcCCChHHHHHHHHHH-HHHHcCCcchhhhhhhCCcccCCH--HHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence 65532110 000 0000001 1111111 1233444 889999999988764
Q ss_pred -----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 -----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 -----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+..+...+.+ ++|||+++|.... +..+||+++.|..+.++..++
T Consensus 259 ~~~~~i~~~i~~l~~-~~Tii~iTH~l~~------------------i~~~~Driivl~~G~i~e~g~ 307 (329)
T PRK14257 259 IATAKIEELILELKK-KYSIIIVTHSMAQ------------------AQRISDETVFFYQGWIEEAGE 307 (329)
T ss_pred HHHHHHHHHHHHHhc-CCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEeCC
Confidence 5555555544 6999999997654 566799999998876655543
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-11 Score=125.43 Aligned_cols=155 Identities=19% Similarity=0.256 Sum_probs=99.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCCCCC--C--HHHHhhcccccCcc---eecCCCCHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHAL--D--PSLAETIGVKTENL---LLAQPDCGEQALS 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e~~~--~--~~~~~~ig~~~~~~---~~~~~~~~e~~l~ 126 (366)
+.+|++++|+|+||||||||++.+++...+ ..|. ++++++... . ..+.+.+|+.+|+. .++...++.+.+.
T Consensus 283 i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~ 361 (500)
T TIGR02633 283 LRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGN-VFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNIT 361 (500)
T ss_pred EeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeE-EEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhc
Confidence 779999999999999999999999998874 5676 566654432 1 23456789999885 3555566666543
Q ss_pred HHH--HHHh--c-C------C----ceEEEEec-ccccCCCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 127 LVD--TLIR--S-G------S----VDVVVVDS-VAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 127 ~~~--~~~~--~-~------~----~~lvviDs-l~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
... .... . . . ...+-+.. .... +...+++ |++|+...||+++..
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LSg--Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~ 438 (500)
T TIGR02633 362 LSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFL-PIGRLSG--GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGA 438 (500)
T ss_pred chhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccC-ccccCCH--HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhH
Confidence 311 0000 0 0 0 00111110 0011 1234554 888888888888754
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+..+...+++.|.|||+++|..+. +..+||+++.|.++.+
T Consensus 439 ~~~l~~~l~~l~~~g~tviivsHd~~~------------------~~~~~d~v~~l~~G~i 481 (500)
T TIGR02633 439 KYEIYKLINQLAQEGVAIIVVSSELAE------------------VLGLSDRVLVIGEGKL 481 (500)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCHHH------------------HHHhCCEEEEEECCEE
Confidence 556666666679999999997765 5667899988876543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.4e-12 Score=118.13 Aligned_cols=134 Identities=17% Similarity=0.209 Sum_probs=80.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceec--CCCCHHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLA--QPDCGEQALS------ 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~--~~~~~e~~l~------ 126 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++...........+++.+|+..+. .+.++++.+.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~ 108 (272)
T PRK15056 30 VPGGSIAALVGVNGSGKSTLFKALMGFVRLASGK-ISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGH 108 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEhHHhhccceEEEeccccccccCCCcchhhheecccccc
Confidence 6799999999999999999999999988887786 566665432211223588888775331 1112332211
Q ss_pred -------------HHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 127 -------------LVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 127 -------------~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
.+...+.... +.....-. ...+++ |++|+...+|+++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~g-----l~~~~~~~-~~~LSg--G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~ 180 (272)
T PRK15056 109 MGWLRRAKKRDRQIVTAALARVD-----MVEFRHRQ-IGELSG--GQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEAR 180 (272)
T ss_pred cccccCCCHHHHHHHHHHHHHcC-----ChhHhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence 1111111111 11111111 133444 778888888777643
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcc
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
+..+...+++.++|||+++|..+.
T Consensus 181 l~~~L~~~~~~g~tviivsH~~~~ 204 (272)
T PRK15056 181 IISLLRELRDEGKTMLVSTHNLGS 204 (272)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHH
Confidence 555555555568999999997654
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-11 Score=115.84 Aligned_cols=152 Identities=15% Similarity=0.208 Sum_probs=95.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~-----~~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
|++|++++|+|+||||||||++.+++... +..|. +++++.... + ..+.+.+++.+|+..++. .++.+.
T Consensus 36 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~-v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~en 113 (269)
T PRK14259 36 IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGR-VLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYEN 113 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceE-EEECCEEcccccCCHHHHhhceEEEccCCccch-hhHHHH
Confidence 77999999999999999999999999875 35666 556655321 2 244567999999877665 377766
Q ss_pred HHHHHHHHhcCC---------ceEEEE-ecccccC--CCCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 125 LSLVDTLIRSGS---------VDVVVV-DSVAALV--PKGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~~---------~~lvvi-Dsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
+.+......... ...+-+ +.+.... +...+++ |++|+...+|++...
T Consensus 114 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~--G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~ 191 (269)
T PRK14259 114 IAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSG--GQQQRLCIARTIAIEPEVILMDEPCSALDPISTL 191 (269)
T ss_pred HhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 653221100000 000000 0000111 1133443 788888888877654
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
+..+...+++ +.|||+++|.... +..+||+++.|.++
T Consensus 192 ~l~~~l~~~~~-~~tiiivtH~~~~------------------~~~~~d~i~~l~~~ 229 (269)
T PRK14259 192 KIEETMHELKK-NFTIVIVTHNMQQ------------------AVRVSDMTAFFNAE 229 (269)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHHH------------------HHHhcCEEEEEecc
Confidence 5555555543 6899999997654 56678999999863
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-11 Score=112.92 Aligned_cols=157 Identities=17% Similarity=0.159 Sum_probs=98.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeE-----EEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYC-----VFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALS 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~v-----l~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~ 126 (366)
+.+|++++|+|+||||||||++.+++...+..|.+ +++++.... . ..+...+++.+|+..++...++.+.+.
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~ 112 (257)
T PRK14246 33 IPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIA 112 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHH
Confidence 66999999999999999999999999888776532 333333322 1 234567899999887776667777665
Q ss_pred HHHHH----------------HhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 127 LVDTL----------------IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 127 ~~~~~----------------~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
..... ++.....-.+.+.... . ...+++ |++++...+|++...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~-~~~LS~--G~~qrl~laral~~~P~llllDEPt~~LD~~~ 188 (257)
T PRK14246 113 YPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNS-P-ASQLSG--GQQQRLTIARALALKPKVLLMDEPTSMIDIVN 188 (257)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcC-C-cccCCH--HHHHHHHHHHHHHcCCCEEEEcCCCccCCHHH
Confidence 33211 0000000000000111 1 123333 788888888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+++ ++|||+++|.... +..+||+++.|..+++...
T Consensus 189 ~~~l~~~l~~~~~-~~tiilvsh~~~~------------------~~~~~d~v~~l~~g~i~~~ 233 (257)
T PRK14246 189 SQAIEKLITELKN-EIAIVIVSHNPQQ------------------VARVADYVAFLYNGELVEW 233 (257)
T ss_pred HHHHHHHHHHHhc-CcEEEEEECCHHH------------------HHHhCCEEEEEECCEEEEE
Confidence 5555555543 6999999997654 4457888888887654443
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-11 Score=116.09 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=95.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~-----~~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
|.+|++++|+|+||||||||++.+++... +..|. ++++++... + ..+.+.+++.+|+..++.. ++.+.
T Consensus 62 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~-I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~en 139 (285)
T PRK14254 62 IPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGE-LTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDN 139 (285)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceE-EEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHH
Confidence 67999999999999999999999998875 34665 566665432 1 2445678999998766654 77766
Q ss_pred HHHHHHHHhcC-----C----ceEEEEe-cccccC--CCCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 125 LSLVDTLIRSG-----S----VDVVVVD-SVAALV--PKGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~-----~----~~lvviD-sl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
+.......... . ...+-+. .+.... +...+++ |++|+...||+++..
T Consensus 140 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSg--Ge~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~ 217 (285)
T PRK14254 140 VAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSG--GQQQRLCIARAIAPDPEVILMDEPASALDPVATS 217 (285)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCH--HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHH
Confidence 65422110000 0 0000000 000011 1234444 888888888887743
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEE-EEEEecee
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRL-NIKRIGLV 232 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i-~l~~~~~~ 232 (366)
+..+...+.+ +.|||+++|.... +..+||+++ .|.++.++
T Consensus 218 ~l~~~L~~~~~-~~tiii~tH~~~~------------------i~~~~dri~v~l~~G~i~ 259 (285)
T PRK14254 218 KIEDLIEELAE-EYTVVIVTHNMQQ------------------AARISDKTAVFLTGGELV 259 (285)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHHH------------------HHhhcCEEEEEeeCCEEE
Confidence 5555555544 4899999997654 455778754 45665443
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.3e-12 Score=130.39 Aligned_cols=155 Identities=22% Similarity=0.290 Sum_probs=101.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCC-----------C
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQP-----------D 119 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~-----------~ 119 (366)
-|++|+.++|+|+||||||||++.+.+.+.+..|. +++|+-+..+ ..+++.+|+++|+..++.. .
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~-I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~ 573 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGR-ILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPE 573 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCC
Confidence 48999999999999999999999999999999887 6777765433 4778999999998766532 2
Q ss_pred -CHHHHHHHHHH-----HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 120 -CGEQALSLVDT-----LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 120 -~~e~~l~~~~~-----~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
+.++++..+.. .+...... .|..-.-. ...++| |++|+...||++...
T Consensus 574 ~~~e~i~~A~~~ag~~~fI~~lP~g---y~t~v~E~-G~~LSG--GQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~ 647 (709)
T COG2274 574 ATDEEIIEAAQLAGAHEFIENLPMG---YDTPVGEG-GANLSG--GQRQRLALARALLSKPKILLLDEATSALDPETEAI 647 (709)
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccc---cccccccC-CCCCCH--HHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHH
Confidence 33444443321 11111000 01000000 223444 777777777776543
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+..|.+. ..|+|+|+++|...- -..||+++.|++++++.+|.
T Consensus 648 I~~~L~~~--~~~~T~I~IaHRl~t-------------------i~~adrIiVl~~Gkiv~~gs 690 (709)
T COG2274 648 ILQNLLQI--LQGRTVIIIAHRLST-------------------IRSADRIIVLDQGKIVEQGS 690 (709)
T ss_pred HHHHHHHH--hcCCeEEEEEccchH-------------------hhhccEEEEccCCceeccCC
Confidence 3333322 147999999996543 34589999999988777764
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-11 Score=111.41 Aligned_cols=146 Identities=17% Similarity=0.273 Sum_probs=98.3
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----------HHHHhhcccccCcceec-CCCCHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----------PSLAETIGVKTENLLLA-QPDCGE 122 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----------~~~~~~ig~~~~~~~~~-~~~~~e 122 (366)
-+.+|++++|+|+|||||||+++.++++..+.+|. +++++.+... ..+.+.+|...+.+.-+ +..+.-
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~-i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGE-ILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCce-EEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 37899999999999999999999999999999887 5666554211 12345566443333222 223333
Q ss_pred --HHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccc
Q 017792 123 --QALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLST 200 (366)
Q Consensus 123 --~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~ 200 (366)
|-+.+++.+. .+++++|.|...+++. .+ .||+ +...|..|. ++.|.+.+||+|+...
T Consensus 114 QrQRi~IARALa--l~P~liV~DEpvSaLD----------vS--iqaq-IlnLL~dlq---~~~~lt~lFIsHDL~v--- 172 (268)
T COG4608 114 QRQRIGIARALA--LNPKLIVADEPVSALD----------VS--VQAQ-ILNLLKDLQ---EELGLTYLFISHDLSV--- 172 (268)
T ss_pred hhhhHHHHHHHh--hCCcEEEecCchhhcc----------hh--HHHH-HHHHHHHHH---HHhCCeEEEEEEEHHh---
Confidence 3344444443 4689999998877762 11 2222 334455555 4569999999997764
Q ss_pred ccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 201 FGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 201 ~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++||++..|..+.++..+.
T Consensus 173 ---------------v~~isdri~VMy~G~iVE~g~ 193 (268)
T COG4608 173 ---------------VRYISDRIAVMYLGKIVEIGP 193 (268)
T ss_pred ---------------hhhhcccEEEEecCceeEecC
Confidence 678899999999887766653
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-11 Score=126.90 Aligned_cols=158 Identities=21% Similarity=0.270 Sum_probs=103.6
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHH-------
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQ------- 123 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~------- 123 (366)
-+++|+.++|+||+||||||+++.+++.+.+..|. +++|+.+..+ ..+++++++++|++.++. .|+.+
T Consensus 351 ~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~-I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~ 428 (567)
T COG1132 351 SIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGE-ILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP 428 (567)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCe-EEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC
Confidence 38899999999999999999999999999998886 5567654433 578899999999887776 33333
Q ss_pred ------HHHHHHHHHhcCCceEEEEecccccCCC--CccCCccchhhHHHHHHHHHHH--------------------HH
Q 017792 124 ------ALSLVDTLIRSGSVDVVVVDSVAALVPK--GELDGEMGDAHMAMQARLMSQA--------------------LR 175 (366)
Q Consensus 124 ------~l~~~~~~~~~~~~~lvviDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~--------------------L~ 175 (366)
+.+.+... ...+.-.-.-+.+...... ..+++ |++|+...||++.+. +.
T Consensus 429 ~at~eei~~a~k~a-~~~d~I~~lp~g~dt~vge~G~~LSg--GQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~ 505 (567)
T COG1132 429 DATDEEIEEALKLA-NAHEFIANLPDGYDTIVGERGVNLSG--GQRQRLAIARALLRNPPILILDEATSALDTETEALIQ 505 (567)
T ss_pred CCCHHHHHHHHHHh-ChHHHHHhCcccccceecCCCccCCH--HHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHH
Confidence 33332221 0000000001122222221 23444 899999999998764 33
Q ss_pred HHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 176 KLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 176 ~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+....+. .+.|+|+|+|..+. +.+ ||.++.|+++++...|+
T Consensus 506 ~~l~~l~-~~rT~iiIaHRlst------------------i~~-aD~IiVl~~G~i~e~G~ 546 (567)
T COG1132 506 DALKKLL-KGRTTLIIAHRLST------------------IKN-ADRIIVLDNGRIVERGT 546 (567)
T ss_pred HHHHHHh-cCCEEEEEeccHhH------------------HHh-CCEEEEEECCEEEEecC
Confidence 3333333 45688889996543 455 89999999988666654
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-11 Score=125.31 Aligned_cols=158 Identities=15% Similarity=0.207 Sum_probs=99.3
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CH--HHHhhcccccCcc---eecCCCCHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP--SLAETIGVKTENL---LLAQPDCGEQALS 126 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~--~~~~~ig~~~~~~---~~~~~~~~e~~l~ 126 (366)
-+++|++++|+||||||||||++.+++...+..|. +++++.... .. .+...++|.+|+. .++...++.+.+.
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~ 363 (510)
T PRK15439 285 EVRAGEILGLAGVVGAGRTELAETLYGLRPARGGR-IMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVC 363 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcE-EEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHH
Confidence 36799999999999999999999999988777776 556654322 11 2234688888864 2444556555432
Q ss_pred HHH-H-H-H--hcCC--------ceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 127 LVD-T-L-I--RSGS--------VDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 127 ~~~-~-~-~--~~~~--------~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
... . . . .... ...+-+. ..... +...+++ |++|+...||+++..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LSg--G~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~ 440 (510)
T PRK15439 364 ALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQ-AARTLSG--GNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARN 440 (510)
T ss_pred hhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccC-ccccCCc--HHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHH
Confidence 110 0 0 0 0000 0001111 11111 1234555 888888888887754
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+.++...+.+.+.|||+++|..+. +..+||+++.|.++.++.
T Consensus 441 ~l~~~l~~l~~~g~tiIivsHd~~~------------------i~~~~d~i~~l~~G~i~~ 483 (510)
T PRK15439 441 DIYQLIRSIAAQNVAVLFISSDLEE------------------IEQMADRVLVMHQGEISG 483 (510)
T ss_pred HHHHHHHHHHhCCCEEEEECCCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 556666666679999999998765 566789999988765443
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-11 Score=125.24 Aligned_cols=156 Identities=12% Similarity=0.166 Sum_probs=95.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH--hhcCCeEEEEe-----------------------CCCC-------C--C-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFID-----------------------AEHA-------L--D- 99 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~--~~~gg~vl~id-----------------------~e~~-------~--~- 99 (366)
+.+|++++|+||||||||||++.+++.. .+..|.+ +++ +... . .
T Consensus 23 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i-~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 101 (520)
T TIGR03269 23 IEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRI-IYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSD 101 (520)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEE-EEeccccccccccccccccccccccccccccccchhhhccCH
Confidence 6799999999999999999999999986 4667764 443 1100 0 1
Q ss_pred ---HHHHhhcccccCc-ceecCCCCHHHHHHHHHHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHH
Q 017792 100 ---PSLAETIGVKTEN-LLLAQPDCGEQALSLVDTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAM 165 (366)
Q Consensus 100 ---~~~~~~ig~~~~~-~~~~~~~~~e~~l~~~~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~ 165 (366)
..+.+.+++.+|+ ..++...++.+.+.+........ -...+-++....-. ...+++ |++|+..
T Consensus 102 ~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LSg--Gq~qrv~ 178 (520)
T TIGR03269 102 KLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHI-ARDLSG--GEKQRVV 178 (520)
T ss_pred HHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC-cccCCH--HHHHHHH
Confidence 1234568999997 45556567766654321110000 01111122221111 245555 8889888
Q ss_pred HHHHHHHH--------------------HHHHHHHh-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEE
Q 017792 166 QARLMSQA--------------------LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRL 224 (366)
Q Consensus 166 ~ar~l~~~--------------------L~~L~~~l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i 224 (366)
.||+++.. +..+...+ ++.+.|||+++|.... +..+||+++
T Consensus 179 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~------------------~~~~~d~i~ 240 (520)
T TIGR03269 179 LARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV------------------IEDLSDKAI 240 (520)
T ss_pred HHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH------------------HHHhcCEEE
Confidence 88888754 44444444 4468999999998765 444567777
Q ss_pred EEEEecee
Q 017792 225 NIKRIGLV 232 (366)
Q Consensus 225 ~l~~~~~~ 232 (366)
.|+++.++
T Consensus 241 ~l~~G~i~ 248 (520)
T TIGR03269 241 WLENGEIK 248 (520)
T ss_pred EEeCCEEe
Confidence 77665544
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-11 Score=115.06 Aligned_cols=152 Identities=14% Similarity=0.163 Sum_probs=95.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-----gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++...+. +|. ++++++... . ..+.+.+++.+++..++. .++.+.
T Consensus 30 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~-i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~en 107 (261)
T PRK14258 30 IYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGR-VEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDN 107 (261)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccce-EEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHH
Confidence 6799999999999999999999999998764 455 556654421 1 234566899888876655 677666
Q ss_pred HHHHHHHHhc-C--C--------ceEEEE-ecccccCC--CCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRS-G--S--------VDVVVV-DSVAALVP--KGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~-~--~--------~~lvvi-Dsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+......... . . ...+-+ +.+..+.. ...+++ |++++...||+++..
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg--Gq~qrv~laral~~~p~vllLDEP~~~LD~~~ 185 (261)
T PRK14258 108 VAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSG--GQQQRLCIARALAVKPKVLLMDEPCFGLDPIA 185 (261)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 5432111000 0 0 000000 00111111 133444 888888888887654
Q ss_pred ---HHHHHHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 174 ---LRKLSHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 174 ---L~~L~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
+.++...++ +.+.|||+++|.... +..+||+++.|+.
T Consensus 186 ~~~l~~~l~~l~~~~~~tiiivsH~~~~------------------i~~~~d~i~~l~~ 226 (261)
T PRK14258 186 SMKVESLIQSLRLRSELTMVIVSHNLHQ------------------VSRLSDFTAFFKG 226 (261)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCHHH------------------HHHhcCEEEEEcc
Confidence 445444443 358999999997764 5667899999986
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-11 Score=112.74 Aligned_cols=153 Identities=17% Similarity=0.143 Sum_probs=93.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC-----CC--CH-H----HHhhcccccCcce--ecCCCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH-----AL--DP-S----LAETIGVKTENLL--LAQPDC 120 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~-----~~--~~-~----~~~~ig~~~~~~~--~~~~~~ 120 (366)
+++|++++|+|+||||||||++.+++...+..|. ++++++. .. .. . +.+.+++.+|+.. +....+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 104 (253)
T TIGR02323 26 LYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGT-ATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVS 104 (253)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCcccc
Confidence 7799999999999999999999999998888787 4556543 21 11 1 1245888888753 222233
Q ss_pred HHHHHHH----------------HHHHHhcCCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH----------
Q 017792 121 GEQALSL----------------VDTLIRSGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA---------- 173 (366)
Q Consensus 121 ~e~~l~~----------------~~~~~~~~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------- 173 (366)
+.+.+.. +..++.... ++ ...... ...+++ |++|+...||+++..
T Consensus 105 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~-----l~~~~~~~~-~~~LSg--G~~qrv~laral~~~p~vlllDEP~ 176 (253)
T TIGR02323 105 AGANIGERLMAIGARHYGNIRAAAHDWLEEVE-----IDPTRIDDL-PRAFSG--GMQQRLQIARNLVTRPRLVFMDEPT 176 (253)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHcC-----CChhhhhcC-chhcCH--HHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 3332211 011111111 11 011111 233444 888888888887664
Q ss_pred ----------HHHHHHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ----------LRKLSHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ----------L~~L~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.++...+. +.+.|||+++|.... +..+||+++.|.++.+...
T Consensus 177 ~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~------------------~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 177 GGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGV------------------ARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhcCEEEEEECCEEEEE
Confidence 444444443 458999999997654 5557888888887655443
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.5e-12 Score=127.91 Aligned_cols=158 Identities=18% Similarity=0.197 Sum_probs=102.0
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---H---HHHhhcccccCcc--eecCCCCHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---P---SLAETIGVKTENL--LLAQPDCGEQAL 125 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~---~~~~~ig~~~~~~--~~~~~~~~e~~l 125 (366)
-+++|++++|+||||||||||++.+++... ..|. +++++..... . .+.+.+++.+|+. .++...++.+.+
T Consensus 308 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~-i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l 385 (529)
T PRK15134 308 TLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGE-IWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQII 385 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcE-EEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHH
Confidence 477999999999999999999999998874 6665 6676654321 1 2345689999986 355566777766
Q ss_pred HHHHHHHh----cC----C----ceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 126 SLVDTLIR----SG----S----VDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 126 ~~~~~~~~----~~----~----~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
........ .. . ...+-+. ..... +...+++ |++|+...||+++..
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LSg--G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~ 462 (529)
T PRK15134 386 EEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHR-YPAEFSG--GQRQRIAIARALILKPSLIILDEPTSSLDKTVQA 462 (529)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhc-CCccCCH--HHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHH
Confidence 54211100 00 0 0111111 11111 1244555 888888888887654
Q ss_pred -HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 -LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 -L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+.+ .++|||+++|.... +..+||+++.|++++++..
T Consensus 463 ~l~~~l~~~~~~~~~tvi~vsHd~~~------------------~~~~~d~i~~l~~G~i~~~ 507 (529)
T PRK15134 463 QILALLKSLQQKHQLAYLFISHDLHV------------------VRALCHQVIVLRQGEVVEQ 507 (529)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHHH------------------HHHhcCeEEEEECCEEEEE
Confidence 5555555544 58999999997764 5567899999987765444
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.26 E-value=8e-12 Score=113.07 Aligned_cols=138 Identities=18% Similarity=0.262 Sum_probs=86.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-------HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-------~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|.|+||||||||++.+++...+..|. ++++++.... ..+.+.+++.+|+..++ +.++.+.+..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~ 101 (218)
T cd03290 24 IPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGK-VHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENITF 101 (218)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCe-EEECCcccccccccccchhhcceEEEEcCCCccc-cccHHHHHhh
Confidence 6799999999999999999999999998887786 5666654321 12335689999987665 4566665543
Q ss_pred HHH----HHhcCCceEEEEec-cccc---------CCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 128 VDT----LIRSGSVDVVVVDS-VAAL---------VPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 128 ~~~----~~~~~~~~lvviDs-l~~l---------~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
... .... ....+-+.. +... .+...+++ |++|+...||+++..
T Consensus 102 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~--G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~ 178 (218)
T cd03290 102 GSPFNKQRYKA-VTDACSLQPDIDLLPFGDQTEIGERGINLSG--GQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH 178 (218)
T ss_pred cCcCCHHHHHH-HHHHhCcHHHHHhCcCccccCcccCCCcCCH--HHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHH
Confidence 110 0000 000000111 0000 01133444 888888888887764
Q ss_pred HHH--HHHHhhhcCcEEEEEecCCcc
Q 017792 174 LRK--LSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 174 L~~--L~~~l~~~~~tVI~i~h~~~~ 197 (366)
+.+ +...+++.+.|||+++|....
T Consensus 179 l~~~~ll~~~~~~~~tii~~sH~~~~ 204 (218)
T cd03290 179 LMQEGILKFLQDDKRTLVLVTHKLQY 204 (218)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCChHH
Confidence 333 555666678999999997653
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-11 Score=127.79 Aligned_cols=151 Identities=17% Similarity=0.196 Sum_probs=98.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCC------------C
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQP------------D 119 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~------------~ 119 (366)
+++|+.++|+|++|||||||+..+++.+ +..|. +++++.+..+ ..+++.+++++|++.+++. .
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~-I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~ 450 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGS-LKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDA 450 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcE-EEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCC
Confidence 6899999999999999999999999999 77776 6777654332 4678899999998876543 2
Q ss_pred CHHHHHHHHHH-----HHhcCCceEEEEecccccCCC--CccCCccchhhHHHHHHHHHHH-------------------
Q 017792 120 CGEQALSLVDT-----LIRSGSVDVVVVDSVAALVPK--GELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 120 ~~e~~l~~~~~-----~~~~~~~~lvviDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
+-+++.+.+.. .+... -|.+...... ..+++ |++|+...||++.+.
T Consensus 451 ~~eei~~al~~a~l~~~i~~l------p~G~dT~vge~G~~LSG--GQrQRialARAll~~~~IliLDE~TSaLD~~te~ 522 (588)
T PRK11174 451 SDEQLQQALENAWVSEFLPLL------PQGLDTPIGDQAAGLSV--GQAQRLALARALLQPCQLLLLDEPTASLDAHSEQ 522 (588)
T ss_pred CHHHHHHHHHHhCHHHHHHhc------ccccccccccCCCCCCH--HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 22333332221 11111 1122222222 23454 899999999988764
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.+....+ ..+.|+|+++|..+. + ..||.++.|+++++...|
T Consensus 523 ~i~~~l~~~-~~~~TvIiItHrl~~------------------i-~~aD~Iivl~~G~i~e~G 565 (588)
T PRK11174 523 LVMQALNAA-SRRQTTLMVTHQLED------------------L-AQWDQIWVMQDGQIVQQG 565 (588)
T ss_pred HHHHHHHHH-hCCCEEEEEecChHH------------------H-HhCCEEEEEeCCeEeecC
Confidence 22222222 248999999996643 2 248999999877655444
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-11 Score=114.86 Aligned_cols=158 Identities=15% Similarity=0.136 Sum_probs=94.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh----cCCeEEEEeCCCCCCH-HHHhhcccccCcce--ecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR----QGGYCVFIDAEHALDP-SLAETIGVKTENLL--LAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~----~gg~vl~id~e~~~~~-~~~~~ig~~~~~~~--~~~~~~~e~~l~~ 127 (366)
+++|++++|+|+||||||||++.+++...+ ..|. +++++...... .+.+.+++.+|+.. +....++.+.+..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~-i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~ 104 (254)
T PRK10418 26 LQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGR-VLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARE 104 (254)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCE-EEECCeeccccccccceEEEEecCCccccCccccHHHHHHH
Confidence 679999999999999999999999998877 6676 56666543222 22356899998863 2233344333221
Q ss_pred HHHHHhcCC--------ceEEEEecccccC--CCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIRSGS--------VDVVVVDSVAALV--PKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~~~~--------~~lvviDsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
......... .+.+-++....+. ....+++ |++|+...||+++.. +..+
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~--Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~ 182 (254)
T PRK10418 105 TCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSG--GMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDL 182 (254)
T ss_pred HHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCH--HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHH
Confidence 100000000 0000011100000 0133443 888888888877653 4444
Q ss_pred HHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 178 SHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 178 ~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
...+. +.++|||+++|..+. +..+||+++.|.++.+..
T Consensus 183 L~~~~~~~g~til~~sH~~~~------------------~~~~~d~v~~l~~G~i~~ 221 (254)
T PRK10418 183 LESIVQKRALGMLLVTHDMGV------------------VARLADDVAVMSHGRIVE 221 (254)
T ss_pred HHHHHHhcCcEEEEEecCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 44443 358999999997654 455788888888765443
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-11 Score=113.50 Aligned_cols=150 Identities=15% Similarity=0.151 Sum_probs=95.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-----gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+.+|++++|+|+||||||||++.+++.+.+. .|. +++++.... . ..+...+++.+|+..++. .++.+.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~en 107 (259)
T PRK14260 30 IYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGV-VDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYEN 107 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceE-EEECCEeccccccchHhhhhheEEEecccccCC-ccHHHH
Confidence 6799999999999999999999999987642 465 566665332 1 234567999999887665 677776
Q ss_pred HHHHHHHHhc-C--C--------ceEEEE-ecccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRS-G--S--------VDVVVV-DSVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~-~--~--------~~lvvi-Dsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+......... . . ...+-+ +.+.... ....+++ |++++...||+++..
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~--G~~qrv~laral~~~p~lllLDEPt~~LD~~~ 185 (259)
T PRK14260 108 VAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSG--GQQQRLCIARALAIKPKVLLMDEPCSALDPIA 185 (259)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 6432111000 0 0 000000 0001111 1234444 888888888887643
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEE
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIK 227 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~ 227 (366)
+.++...+++ ++|||+++|..+. +..+||+++.|+
T Consensus 186 ~~~l~~~l~~~~~-~~tiii~tH~~~~------------------i~~~~d~i~~l~ 223 (259)
T PRK14260 186 TMKVEELIHSLRS-ELTIAIVTHNMQQ------------------ATRVSDFTAFFS 223 (259)
T ss_pred HHHHHHHHHHHhc-CCEEEEEeCCHHH------------------HHHhcCeEEEEe
Confidence 5555555544 6899999997765 566789888886
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-11 Score=114.60 Aligned_cols=158 Identities=13% Similarity=0.132 Sum_probs=97.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCC------C-HHHHhhcccccCcceecCCCCHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL------D-PSLAETIGVKTENLLLAQPDCGE 122 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~------~-~~~~~~ig~~~~~~~~~~~~~~e 122 (366)
+.+|++++|+|+||||||||++.+++...+ ..|. +++++.... . ..+...+++.+|+..++.. ++.
T Consensus 39 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~-i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~ 116 (265)
T PRK14252 39 VHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGE-IILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIF 116 (265)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccE-EEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHH
Confidence 679999999999999999999999988764 3565 556654321 1 2345678999998776654 666
Q ss_pred HHHHHHHHHH--------hcC---CceEEEE-ecccccCC--CCccCCccchhhHHHHHHHHHHH---------------
Q 017792 123 QALSLVDTLI--------RSG---SVDVVVV-DSVAALVP--KGELDGEMGDAHMAMQARLMSQA--------------- 173 (366)
Q Consensus 123 ~~l~~~~~~~--------~~~---~~~lvvi-Dsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------- 173 (366)
+.+....... ... ....+-+ +.+..... ...+++ |++++...+|++...
T Consensus 117 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~--G~~qrv~laral~~~p~llllDEPt~gLD~ 194 (265)
T PRK14252 117 ENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSG--GQQQRLCIARALATDPEILLFDEPTSALDP 194 (265)
T ss_pred HHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCH--HHHHHHHHHHHHHcCCCEEEEeCCCccCCH
Confidence 6654321100 000 0000000 00111110 123443 788888888877654
Q ss_pred -----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 -----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 -----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+..+...+++ ++|||+++|..+. +..+||+++.|+++.+...+
T Consensus 195 ~~~~~l~~~l~~l~~-~~tiiivth~~~~------------------~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 195 IATASIEELISDLKN-KVTILIVTHNMQQ------------------AARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred HHHHHHHHHHHHHHh-CCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEEeC
Confidence 5555555544 6899999997654 55678999999876654443
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.2e-12 Score=121.18 Aligned_cols=151 Identities=16% Similarity=0.228 Sum_probs=99.4
Q ss_pred EEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc-------
Q 017792 63 IYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS------- 134 (366)
Q Consensus 63 I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~------- 134 (366)
|+||||||||||++.+++...+..|. ++++++.... ....+.+++.+|+..++...++.+++.+.......
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~-I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGS-IMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceE-EEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 58999999999999999998888887 5666654322 23456799999998888778888877653211000
Q ss_pred ---CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-hcCcEEEE
Q 017792 135 ---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS-LSQTILIF 190 (366)
Q Consensus 135 ---~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~-~~~~tVI~ 190 (366)
.-...+-++....-. ...+++ |++|+...||+++.. ++.+...+. +.++|||+
T Consensus 80 ~~~~~l~~~~l~~~~~~~-~~~LSg--Gq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiii 156 (325)
T TIGR01187 80 RVLEALRLVQLEEFADRK-PHQLSG--GQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVF 156 (325)
T ss_pred HHHHHHHHcCCcchhcCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 001111112111111 234554 888888889888764 555554443 45999999
Q ss_pred EecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 191 INQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 191 i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
++|...+ +..+||+++.|+++.+...+
T Consensus 157 vTHd~~e------------------~~~~~d~i~vl~~G~i~~~g 183 (325)
T TIGR01187 157 VTHDQEE------------------AMTMSDRIAIMRKGKIAQIG 183 (325)
T ss_pred EeCCHHH------------------HHHhCCEEEEEECCEEEEEc
Confidence 9997765 45578888888877765543
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-11 Score=127.30 Aligned_cols=163 Identities=18% Similarity=0.193 Sum_probs=109.1
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~--gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+=+++|++++|.||||||||||++.+++...+. .|. ++++++... ....+++++++|+..+....|+.+.+.+...
T Consensus 89 ~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~-I~inG~~~~-~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~ 166 (659)
T PLN03211 89 GMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGT-ILANNRKPT-KQILKRTGFVTQDDILYPHLTVRETLVFCSL 166 (659)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEE-EEECCEECc-hhhccceEEECcccccCCcCCHHHHHHHHHH
Confidence 458999999999999999999999999887653 565 667765432 3344679999999888878899888776432
Q ss_pred HHhcCC--c--eEEEEecccc---c-------C---CCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 131 LIRSGS--V--DVVVVDSVAA---L-------V---PKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 131 ~~~~~~--~--~lvviDsl~~---l-------~---~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
+..... . ..-.++.+.. + . ....+++ |++++...|+++...
T Consensus 167 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSg--GerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~ 244 (659)
T PLN03211 167 LRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISG--GERKRVSIAHEMLINPSLLILDEPTSGLDATAAYR 244 (659)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcCh--hhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHH
Confidence 210000 0 0000111110 0 0 0123554 889999999888753
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++.+.+.+.|.|||+++|..+. .+..++|.++.|.+++.+..|+
T Consensus 245 l~~~L~~l~~~g~TvI~~sH~~~~-----------------~i~~~~D~iilL~~G~iv~~G~ 290 (659)
T PLN03211 245 LVLTLGSLAQKGKTIVTSMHQPSS-----------------RVYQMFDSVLVLSEGRCLFFGK 290 (659)
T ss_pred HHHHHHHHHhCCCEEEEEecCCCH-----------------HHHHhhceEEEecCCcEEEECC
Confidence 555555555679999999997642 0446789999998887766654
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-11 Score=125.16 Aligned_cols=157 Identities=17% Similarity=0.221 Sum_probs=99.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---CHHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
+++|+.++|+|++|||||||++.+++.+.+.+|. +++|+.+.. ...+.+.+++.+|++.+++. |+.+++...
T Consensus 364 i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~-I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~~ 441 (592)
T PRK10790 364 VPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGE-IRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGRDI 441 (592)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCce-EEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCCCC
Confidence 7899999999999999999999999999998886 677765432 24778899999999887754 444333221
Q ss_pred -----HHHHhcCCce-EE--EEecccccCC--CCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 -----DTLIRSGSVD-VV--VVDSVAALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 -----~~~~~~~~~~-lv--viDsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
...++.-... .+ .-+.+..... ...+++ |++|+...||++.+. +.+..
T Consensus 442 ~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSG--GqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l 519 (592)
T PRK10790 442 SEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSV--GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQAL 519 (592)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH--HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 1111110000 00 0011111111 123444 899999999988764 32223
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
..+. .++|+|+++|.... +. .||.++.|+++++...|
T Consensus 520 ~~~~-~~~tvIivtHr~~~------------------l~-~~D~ii~l~~G~i~~~G 556 (592)
T PRK10790 520 AAVR-EHTTLVVIAHRLST------------------IV-EADTILVLHRGQAVEQG 556 (592)
T ss_pred HHHh-CCCEEEEEecchHH------------------HH-hCCEEEEEECCEEEEEc
Confidence 2222 37999999996542 22 48999999877654433
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.8e-11 Score=125.18 Aligned_cols=151 Identities=19% Similarity=0.254 Sum_probs=99.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHH-----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALS----- 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~----- 126 (366)
+++|+.++|+|+||||||||++.+++.+.+..|. +++++.+..+ ..+.+.+++.+|+..+++. |+.+++.
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~-I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~ 443 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE-ILLDGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYARTE 443 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhccCCCCce-EEECCEEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCCCC
Confidence 6899999999999999999999999999998887 6777654322 4678889999998876642 3333322
Q ss_pred ---------HHHH-----HHhcCCceEEEEecccccCC--CCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 127 ---------LVDT-----LIRSGSVDVVVVDSVAALVP--KGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 127 ---------~~~~-----~~~~~~~~lvviDsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
.+.. .+.... +.+..... ...+++ |++|+...||++.+.
T Consensus 444 ~~~~~~i~~al~~~~l~~~i~~lp------~Gldt~ig~~g~~LSG--GqrQRi~LARall~~~~ililDEptsaLD~~t 515 (582)
T PRK11176 444 QYSREQIEEAARMAYAMDFINKMD------NGLDTVIGENGVLLSG--GQRQRIAIARALLRDSPILILDEATSALDTES 515 (582)
T ss_pred CCCHHHHHHHHHHhCcHHHHHhcc------cccCceeCCCCCcCCH--HHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence 2111 111111 11111111 133554 899999999998774
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.+....+ ..++|+|+++|..+ ....||+++.|+++++...|
T Consensus 516 ~~~i~~~l~~~-~~~~tvI~VtHr~~-------------------~~~~~D~Ii~l~~g~i~e~g 560 (582)
T PRK11176 516 ERAIQAALDEL-QKNRTSLVIAHRLS-------------------TIEKADEILVVEDGEIVERG 560 (582)
T ss_pred HHHHHHHHHHH-hCCCEEEEEecchH-------------------HHHhCCEEEEEECCEEEEeC
Confidence 22222222 24799999999653 23348999999887655444
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-11 Score=111.33 Aligned_cols=150 Identities=17% Similarity=0.206 Sum_probs=93.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLVD-- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-- 129 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++... . ..+.+.+++.+|+..++. .++.+.+....
T Consensus 37 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~ 114 (226)
T cd03248 37 LHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQ-VLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQS 114 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcE-EEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCC
Confidence 6799999999999999999999999998888887 666765432 1 234567899988876543 35555443210
Q ss_pred -------HHHhcCCc----eEE--EEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 130 -------TLIRSGSV----DVV--VVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 130 -------~~~~~~~~----~lv--viDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
........ ..+ -++...... ...+++ |++++...+|+++.. +..
T Consensus 115 ~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-~~~LSg--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 191 (226)
T cd03248 115 CSFECVKEAAQKAHAHSFISELASGYDTEVGEK-GSQLSG--GQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQ 191 (226)
T ss_pred CCHHHHHHHHHHcCcHHHHHhccccccchhhcC-CCcCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 00000000 000 011111111 133443 788888888887654 455
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
+...+.+ +.|||+++|..+. +. .||+++.|.++
T Consensus 192 ~l~~~~~-~~tii~~sh~~~~------------------~~-~~d~i~~l~~g 224 (226)
T cd03248 192 ALYDWPE-RRTVLVIAHRLST------------------VE-RADQILVLDGG 224 (226)
T ss_pred HHHHHcC-CCEEEEEECCHHH------------------HH-hCCEEEEecCC
Confidence 5555544 6899999997654 43 37888887654
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-11 Score=108.33 Aligned_cols=139 Identities=15% Similarity=0.142 Sum_probs=85.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
+++|++++|+|+||||||||++.+++...+..|. +++++...... ..+.+++.+++..+....++.+.+.........
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~i~~~-~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~ 100 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGN-IYYKNCNINNI-AKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNS 100 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCcccChh-hhhhEEeccCCcCCCccCCHHHHHHHHHHhccc
Confidence 6799999999999999999999999988888886 56776543221 134577877776555566777665442211000
Q ss_pred C-C----ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhhcCcEEE
Q 017792 135 G-S----VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSLSQTILI 189 (366)
Q Consensus 135 ~-~----~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~~~~tVI 189 (366)
. . ...+-++....- ....+++ |++++...+|+++.. +..+.....+.+.|||
T Consensus 101 ~~~~~~~l~~~~l~~~~~~-~~~~LS~--G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tii 177 (195)
T PRK13541 101 AETLYAAIHYFKLHDLLDE-KCYSLSS--GMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVL 177 (195)
T ss_pred HHHHHHHHHHcCCHhhhcc-ChhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 0 0 000001110000 0123333 777777777776653 4444443445789999
Q ss_pred EEecCCccc
Q 017792 190 FINQVRAKL 198 (366)
Q Consensus 190 ~i~h~~~~~ 198 (366)
+++|....+
T Consensus 178 i~sh~~~~i 186 (195)
T PRK13541 178 LSSHLESSI 186 (195)
T ss_pred EEeCCcccc
Confidence 999987653
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.24 E-value=8e-12 Score=116.01 Aligned_cols=155 Identities=18% Similarity=0.200 Sum_probs=94.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHH----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSL---- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~---- 127 (366)
+++|++++|+|+||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+..++. .++.+.+..
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~ 121 (257)
T cd03288 44 IKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK-IVIDGIDISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPECKC 121 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCe-EEECCEEhhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCCCC
Confidence 6799999999999999999999999988887886 5666654322 345667899998876543 243332211
Q ss_pred ----HHHHHhcCCc----eEE--EEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 ----VDTLIRSGSV----DVV--VVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ----~~~~~~~~~~----~lv--viDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
+......... ... -++....- +...+++ |++|+...||+++.. +.++
T Consensus 122 ~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~-~~~~LS~--G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~ 198 (257)
T cd03288 122 TDDRLWEALEIAQLKNMVKSLPGGLDAVVTE-GGENFSV--GQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKV 198 (257)
T ss_pred CHHHHHHHHHHhCcHHHHhhcccccCcEecc-CCCcCCH--HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 0000000000 000 01111000 0123443 788888888877653 4444
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
...+. .++|||+++|.... +.. ||+++.|.+++++..
T Consensus 199 l~~~~-~~~tiii~sh~~~~------------------~~~-~dri~~l~~G~i~~~ 235 (257)
T cd03288 199 VMTAF-ADRTVVTIAHRVST------------------ILD-ADLVLVLSRGILVEC 235 (257)
T ss_pred HHHhc-CCCEEEEEecChHH------------------HHh-CCEEEEEECCEEEEe
Confidence 44443 48999999997654 333 899999987765443
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.1e-11 Score=106.93 Aligned_cols=145 Identities=20% Similarity=0.284 Sum_probs=89.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccC-----ccee---cCCCCH-----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTE-----NLLL---AQPDCG----- 121 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~-----~~~~---~~~~~~----- 121 (366)
+.+|+.++|+|+||||||||++.+++.+.|..|. +.+++.-+ +.+.-..|++++ |+.+ ....+.
T Consensus 50 i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~-v~v~G~v~--~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~ 126 (249)
T COG1134 50 IYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGK-VKVTGKVA--PLIELGAGFDPELTGRENIYLRGLILGLTRKEIDE 126 (249)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCccCCCCce-EEEcceEe--hhhhcccCCCcccchHHHHHHHHHHhCccHHHHHH
Confidence 6799999999999999999999999999998886 44444321 122223333332 1111 011111
Q ss_pred --HHHHHHH----------------------HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHH
Q 017792 122 --EQALSLV----------------------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 177 (366)
Q Consensus 122 --e~~l~~~----------------------~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L 177 (366)
+++.++. -.....-+++++++|.+.+.- +.+ -.+ +.+.++
T Consensus 127 ~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavG----------D~~---F~~---K~~~rl 190 (249)
T COG1134 127 KVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVG----------DAA---FQE---KCLERL 190 (249)
T ss_pred HHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcC----------CHH---HHH---HHHHHH
Confidence 1111111 111223478999999988774 221 111 222233
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCcc
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEE 237 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~ 237 (366)
.. +.+.+.|||+++|.... +..+||+.++|+++++...|+.
T Consensus 191 ~e-~~~~~~tiv~VSHd~~~------------------I~~~Cd~~i~l~~G~i~~~G~~ 231 (249)
T COG1134 191 NE-LVEKNKTIVLVSHDLGA------------------IKQYCDRAIWLEHGQIRMEGSP 231 (249)
T ss_pred HH-HHHcCCEEEEEECCHHH------------------HHHhcCeeEEEeCCEEEEcCCH
Confidence 22 23457999999997654 7889999999999987776653
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-11 Score=125.20 Aligned_cols=157 Identities=17% Similarity=0.240 Sum_probs=101.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHH----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSL---- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~---- 127 (366)
+++|+.++|+||||||||||++.+++.+.+..|. +++++.+..+ ..+.+.+++.+|+..+++. |+.+++..
T Consensus 363 i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~-I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~ 440 (574)
T PRK11160 363 IKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGE-ILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAPN 440 (574)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCCc
Confidence 6899999999999999999999999999988887 6777764332 4677889999998876653 44444321
Q ss_pred -----HHHHHhcCCceEEE--EecccccCCC--CccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 128 -----VDTLIRSGSVDVVV--VDSVAALVPK--GELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 128 -----~~~~~~~~~~~lvv--iDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
+...++.-...-.+ -+.+...... ..+++ |++|+...||++.+. +.+..
T Consensus 441 ~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSg--GqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l 518 (574)
T PRK11160 441 ASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSG--GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL 518 (574)
T ss_pred cCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 11111111111000 1122222211 23444 899999999988764 33333
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
..+. .++|+|+++|..+. + ..||+++.|+++++...|
T Consensus 519 ~~~~-~~~tviiitHr~~~------------------~-~~~d~i~~l~~G~i~~~g 555 (574)
T PRK11160 519 AEHA-QNKTVLMITHRLTG------------------L-EQFDRICVMDNGQIIEQG 555 (574)
T ss_pred HHHc-CCCEEEEEecChhH------------------H-HhCCEEEEEeCCeEEEeC
Confidence 3322 48999999996543 2 248999999877655444
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-11 Score=110.89 Aligned_cols=59 Identities=24% Similarity=0.434 Sum_probs=45.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQAL 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l 125 (366)
+++|++++|.||||||||||++.+++...+..|.+ ++++ ++++.+|++.++ +.++.+.+
T Consensus 28 i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i-~~~g----------~i~~~~q~~~l~-~~t~~enl 86 (204)
T cd03250 28 VPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSV-SVPG----------SIAYVSQEPWIQ-NGTIRENI 86 (204)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeE-EEcC----------EEEEEecCchhc-cCcHHHHh
Confidence 77999999999999999999999999988888874 5554 577777776554 33444433
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-11 Score=113.46 Aligned_cols=139 Identities=19% Similarity=0.269 Sum_probs=81.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCC--CCHHHHHHH-----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQP--DCGEQALSL----- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~--~~~e~~l~~----- 127 (366)
+++|++++|+|+||||||||++.+++.+.+..|.+ +++. ...+++.+|+..+... .++.+.+..
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i-~~~~--------~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~ 97 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-KRNG--------KLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTK 97 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECC--------ccCEEEeccccccccccChhHHHHHhcccccc
Confidence 67999999999999999999999999888877764 4443 1246777776544322 133322210
Q ss_pred ---HHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhh-
Q 017792 128 ---VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSL- 183 (366)
Q Consensus 128 ---~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~- 183 (366)
+..++.... +...... +...+++ |++++...||+++.. +.++...+.+
T Consensus 98 ~~~~~~~l~~~g-----l~~~~~~-~~~~LSg--Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 169 (251)
T PRK09544 98 KEDILPALKRVQ-----AGHLIDA-PMQKLSG--GETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRE 169 (251)
T ss_pred HHHHHHHHHHcC-----ChHHHhC-ChhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 111111100 0110000 1123333 666666666666543 4444444333
Q ss_pred cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 184 ~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
.++|||+++|..+. +..+||+++.|..
T Consensus 170 ~g~tiiivsH~~~~------------------i~~~~d~i~~l~~ 196 (251)
T PRK09544 170 LDCAVLMVSHDLHL------------------VMAKTDEVLCLNH 196 (251)
T ss_pred cCCEEEEEecCHHH------------------HHHhCCEEEEECC
Confidence 48999999997765 4556788887753
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-11 Score=115.38 Aligned_cols=155 Identities=20% Similarity=0.226 Sum_probs=106.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcce--ecCCCCHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLL--LAQPDCGEQALS 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~--~~~~~~~e~~l~ 126 (366)
+.+|+.++|+|++|||||||.+.+..++... |. ++++++.... ..+++++-+++|+++ +.+..++.+++.
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~-I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~ 387 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GE-IRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIE 387 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ce-EEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhh
Confidence 5789999999999999999999999988876 54 6666665432 245677888998875 334456666543
Q ss_pred H-----------------HHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 127 L-----------------VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 127 ~-----------------~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
. +...+. -+-+|.-.......+++| |++|+..+||++.-.
T Consensus 388 EGL~vh~~~ls~~eR~~rv~~aL~-----EVGLDp~~r~RYPhEFSG--GQRQRIAIARAliLkP~~i~LDEPTSALD~S 460 (534)
T COG4172 388 EGLRVHEPKLSAAERDQRVIEALE-----EVGLDPATRNRYPHEFSG--GQRQRIAIARALILKPELILLDEPTSALDRS 460 (534)
T ss_pred hhhhhcCCCCCHHHHHHHHHHHHH-----HcCCChhHhhcCCcccCc--chhhHHHHHHHHhcCCcEEEecCCchHhhHH
Confidence 2 111111 222344333222367776 888888888887543
Q ss_pred ----HHHHHHHh-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 ----LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 ----L~~L~~~l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+..|.+.| +++|.+-+||+|.... +.-+|+.+|.|++++++.+|+
T Consensus 461 VQaQvv~LLr~LQ~k~~LsYLFISHDL~V------------------vrAl~~~viVm~~GkiVE~G~ 510 (534)
T COG4172 461 VQAQVLDLLRDLQQKHGLSYLFISHDLAV------------------VRALCHRVIVMRDGKIVEQGP 510 (534)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeccHHH------------------HHHhhceEEEEeCCEEeeeCC
Confidence 22222222 5789999999998765 556799999999998888775
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.8e-11 Score=111.99 Aligned_cols=157 Identities=13% Similarity=0.132 Sum_probs=97.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh--h---cCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ--R---QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~--~---~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+.+|++++|+|+||||||||++.+++... + ..|. +++++..... ..+.+.+++.+|+..++. .++.+.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~n 105 (252)
T PRK14255 28 FNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGN-VSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYEN 105 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccE-EEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHH
Confidence 67999999999999999999999998754 3 2565 5667654321 234457899999877665 577666
Q ss_pred HHHHHHHHhcCC-----------ceEEEE-ecccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSGS-----------VDVVVV-DSVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~~-----------~~lvvi-Dsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+........... .+.+-+ +.+.... +...+++ |++++...+|+++..
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~--Gq~qrv~laral~~~p~llllDEPt~~LD~~~ 183 (252)
T PRK14255 106 VIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSG--GQQQRVCIARVLAVKPDVILLDEPTSALDPIS 183 (252)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 654211100000 000000 0111111 1233444 788888888887654
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+.+ +.|||+++|.... +..+||+++.|+++.++..
T Consensus 184 ~~~l~~~l~~~~~-~~tii~vsH~~~~------------------~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 184 STQIENMLLELRD-QYTIILVTHSMHQ------------------ASRISDKTAFFLTGNLIEF 228 (252)
T ss_pred HHHHHHHHHHHHh-CCEEEEEECCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 5455544444 5899999997654 5567899999987765443
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.6e-12 Score=131.13 Aligned_cols=157 Identities=19% Similarity=0.177 Sum_probs=98.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC------------CC-HH---H-HhhcccccCcc--ee
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA------------LD-PS---L-AETIGVKTENL--LL 115 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~------------~~-~~---~-~~~ig~~~~~~--~~ 115 (366)
+++|++++|+|+||||||||++.+++.+.+..|.+ ++++... .. .. + ...+|+.+|++ .+
T Consensus 39 v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i-~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l 117 (623)
T PRK10261 39 LQRGETLAIVGESGSGKSVTALALMRLLEQAGGLV-QCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSL 117 (623)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEE-EECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhc
Confidence 67999999999999999999999999988777764 4443210 11 11 1 23689999986 34
Q ss_pred cCCCCHHHHHHHHHHHHhcC-----------CceEEEEec---ccccCCCCccCCccchhhHHHHHHHHHHH--------
Q 017792 116 AQPDCGEQALSLVDTLIRSG-----------SVDVVVVDS---VAALVPKGELDGEMGDAHMAMQARLMSQA-------- 173 (366)
Q Consensus 116 ~~~~~~e~~l~~~~~~~~~~-----------~~~lvviDs---l~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------- 173 (366)
....++.+.+.+........ -...+-+.. ..... ..++++ |++|+...|++++..
T Consensus 118 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-~~~LSg--Gq~QRv~iA~AL~~~P~lLllDE 194 (623)
T PRK10261 118 NPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRY-PHQLSG--GMRQRVMIAMALSCRPAVLIADE 194 (623)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCC-CccCCH--HHHHHHHHHHHHhCCCCEEEEeC
Confidence 55567777665422110000 011111111 11111 245555 889999999887754
Q ss_pred ------------HHHHHHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 ------------LRKLSHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 ------------L~~L~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+..+.+.+. +.|+|||+++|.... +..+||+++.|+++.++.
T Consensus 195 Pt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~------------------~~~~adri~vl~~G~i~~ 249 (623)
T PRK10261 195 PTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGV------------------VAEIADRVLVMYQGEAVE 249 (623)
T ss_pred CCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH------------------HHHhCCEEEEeeCCeecc
Confidence 556666665 459999999998765 445566777776655443
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.8e-11 Score=101.01 Aligned_cols=129 Identities=22% Similarity=0.326 Sum_probs=85.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHH--HHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQ--ALSLVD 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~--~l~~~~ 129 (366)
+++|++++|+|+||+|||||+..+++.+.+..|. +++++..... ..+...+++.+| .+.-+ -+.++.
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~-i~~~~~~~~~~~~~~~~~~i~~~~q-------lS~G~~~r~~l~~ 93 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGE-ILIDGKDIAKLPLEELRRRIGYVPQ-------LSGGQRQRVALAR 93 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccE-EEECCEEcccCCHHHHHhceEEEee-------CCHHHHHHHHHHH
Confidence 6799999999999999999999999988877776 5777654332 244556777766 33322 233334
Q ss_pred HHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeee
Q 017792 130 TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEV 209 (366)
Q Consensus 130 ~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~ 209 (366)
.+. .++.++++|....-... .-...+...+..+ .+.++++|+++|..+.
T Consensus 94 ~l~--~~~~i~ilDEp~~~lD~-------------~~~~~l~~~l~~~----~~~~~tii~~sh~~~~------------ 142 (157)
T cd00267 94 ALL--LNPDLLLLDEPTSGLDP-------------ASRERLLELLREL----AEEGRTVIIVTHDPEL------------ 142 (157)
T ss_pred HHh--cCCCEEEEeCCCcCCCH-------------HHHHHHHHHHHHH----HHCCCEEEEEeCCHHH------------
Confidence 443 35899999998766520 0112222333333 3347999999998765
Q ss_pred ccCCceeeeeceEEEEEEE
Q 017792 210 TCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 210 ~~gG~~l~~~ad~~i~l~~ 228 (366)
+..+||.++.+.+
T Consensus 143 ------~~~~~d~i~~l~~ 155 (157)
T cd00267 143 ------AELAADRVIVLKD 155 (157)
T ss_pred ------HHHhCCEEEEEeC
Confidence 4445777777754
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.2e-11 Score=121.33 Aligned_cols=155 Identities=15% Similarity=0.171 Sum_probs=96.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H--HHHhhcccccCcce---ecCCCCHHHH--H
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P--SLAETIGVKTENLL---LAQPDCGEQA--L 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~--~~~~~ig~~~~~~~---~~~~~~~e~~--l 125 (366)
+++|++++|+|+||||||||++.+++...+..|. ++++++.... . .+.+.+++.+|+.. +++..++.+. +
T Consensus 271 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 349 (491)
T PRK10982 271 LHKGEILGIAGLVGAKRTDIVETLFGIREKSAGT-ITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLI 349 (491)
T ss_pred EeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccE-EEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheeh
Confidence 7899999999999999999999999988877786 5666643321 1 22445788877632 3333333222 1
Q ss_pred HHHHHHHhc-C-------------CceEEEE-ecccccCCCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 126 SLVDTLIRS-G-------------SVDVVVV-DSVAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 126 ~~~~~~~~~-~-------------~~~lvvi-Dsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
..+...... . -...+-+ +..... +...+++ |++|+...||+++..
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LSg--Gq~qrv~la~al~~~p~illLDEPt~gLD~~~ 426 (491)
T PRK10982 350 SNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRT-QIGSLSG--GNQQKVIIGRWLLTQPEILMLDEPTRGIDVGA 426 (491)
T ss_pred hhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccc-ccccCCc--HHHHHHHHHHHHhcCCCEEEEcCCCcccChhH
Confidence 101000000 0 0011111 111111 1245555 888888888887664
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+.++...+.+.+.|||+++|..+. +..+||+++.|.++.+
T Consensus 427 ~~~~~~~l~~l~~~~~tvi~vsHd~~~------------------~~~~~d~v~~l~~g~i 469 (491)
T PRK10982 427 KFEIYQLIAELAKKDKGIIIISSEMPE------------------LLGITDRILVMSNGLV 469 (491)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCChHH------------------HHhhCCEEEEEECCEE
Confidence 666666667789999999998765 5567999999986643
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-11 Score=112.53 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=96.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++...+ ..|. ++++++.... ....+.+++.+|+..++. .++.+.
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~en 106 (253)
T PRK14261 29 IPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGD-ILYNGENIMDSGADVVALRRKIGMVFQRPNPFP-KSIYEN 106 (253)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceE-EEECCEEccccccchhhhhceEEEEecCCccCc-ccHHHH
Confidence 679999999999999999999999987542 2465 5666554321 234556899999876665 377776
Q ss_pred HHHHHHHHhcCC-----------ceEEEE-ecccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSGS-----------VDVVVV-DSVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~~-----------~~lvvi-Dsl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+.+......... .+.+-+ +.+.... +...+++ |++++...+|++...
T Consensus 107 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~--G~~qrv~laral~~~p~lllLDEP~~gLD~~~ 184 (253)
T PRK14261 107 VAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSG--GQQQRLCIARTLAVNPEVILMDEPCSALDPIA 184 (253)
T ss_pred HHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 654322110000 000000 0011111 1123333 778888888877653
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+++ +.|||+++|.... +..+||+++.|.+++++..
T Consensus 185 ~~~l~~~l~~~~~-~~tvii~sh~~~~------------------~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14261 185 TAKIEDLIEDLKK-EYTVIIVTHNMQQ------------------AARVSDYTGFMYLGKLIEF 229 (253)
T ss_pred HHHHHHHHHHHhh-CceEEEEEcCHHH------------------HHhhCCEEEEEECCEEEEc
Confidence 5555555544 5899999997654 5567898888887765433
|
|
| >KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.2e-11 Score=111.58 Aligned_cols=197 Identities=17% Similarity=0.172 Sum_probs=128.6
Q ss_pred ChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH----HHHhhcccccC------
Q 017792 42 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP----SLAETIGVKTE------ 111 (366)
Q Consensus 42 G~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~----~~~~~ig~~~~------ 111 (366)
-+|.|++.|+ |..+|+++++.||+|||||||+...+..+..+|-..+|-++|..... .+.+-.|+...
T Consensus 259 RFpvLNk~Lk--GhR~GElTvlTGpTGsGKTTFlsEYsLDL~~QGVnTLwgSFEi~n~rla~~mL~Qyagyrl~drl~~y 336 (514)
T KOG2373|consen 259 RFPVLNKYLK--GHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQGVNTLWGSFEIPNKRLAHWMLVQYAGYRLLDRLNSY 336 (514)
T ss_pred hhhHHHHHhc--cCCCCceEEEecCCCCCceeEehHhhHHHHhhhhhheeeeeecchHHHHHHHHHHHccCchHhhhhhh
Confidence 3678999997 99999999999999999999998888888888888899998876543 22233344321
Q ss_pred --------cce-----ecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHH
Q 017792 112 --------NLL-----LAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLS 178 (366)
Q Consensus 112 --------~~~-----~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~ 178 (366)
++. +......+..++.+...+--.++..||||.++.|.....+..+ + -...-.+...+|+++
T Consensus 337 ~HWadrFErlplyfmtfhgqq~~~~vi~~i~ha~yV~di~HViIDNLQFmmg~~~~~~D---r--f~~QD~iig~fR~fA 411 (514)
T KOG2373|consen 337 KHWADRFERLPLYFMTFHGQQFMEKVINEIAHAIYVEDIQHVIIDNLQFMMGQGMMALD---R--FHLQDRIIGYFRQFA 411 (514)
T ss_pred hHHHHHHhccchHhhhhcccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHhccchhccc---h--hhhHHHHHHHHHHHh
Confidence 110 1112234445555555554557889999999999865444421 1 111223445667666
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCC
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP 255 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~ 255 (366)
.+++|.|-++-|.+++-+.... .+....|.....+-||.++.+.+.+... ..|.+ ++.|.||||...
T Consensus 412 ---T~nn~HvTlVvHPRKed~d~El--~t~s~fGsAkatQEADNVliiQdkrl~~----~rgkk-yLqi~KNRy~Gd 478 (514)
T KOG2373|consen 412 ---TQNNIHVTLVVHPRKEDGDTEL--DTQSFFGSAKATQEADNVLIIQDKRLDR----DRGKK-YLQILKNRYYGD 478 (514)
T ss_pred ---hccceeEEEEecccccCCCcee--eehhhccccccccccccEEEEeeccccc----ccchh-hhhhhhhcccCc
Confidence 6789999999999987322100 0011223344677899999998754322 22433 899999998654
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.2e-11 Score=110.67 Aligned_cols=157 Identities=14% Similarity=0.187 Sum_probs=96.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh--h---cCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ--R---QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~--~---~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++... + ..|. +++++..... ..+.+.+++.+|+..++.. ++.+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~n 103 (250)
T PRK14266 26 IPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGH-IYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDN 103 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccE-EEECCEEcccccccHHHHhhheEEEecCCccCcc-hHHHH
Confidence 67999999999999999999999998764 2 4566 5667654321 2345679999998766653 66655
Q ss_pred HHHHHHHHhcCC-----------ceEEEEe-cccccC--CCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 125 LSLVDTLIRSGS-----------VDVVVVD-SVAALV--PKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 125 l~~~~~~~~~~~-----------~~lvviD-sl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+........... ...+-++ .+..+. +...+++ |++|+...+|+++..
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~--Gq~qrv~laral~~~p~llllDEP~~gLD~~~ 181 (250)
T PRK14266 104 VAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSG--GQQQRLCIARTIAVSPEVILMDEPCSALDPIS 181 (250)
T ss_pred HHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCH--HHHHHHHHHHHHHcCCCEEEEcCCCccCCHHH
Confidence 543211000000 0000000 011111 1233443 888888888887754
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+++ ++|||+++|.... +..+||+++.+.++.+...
T Consensus 182 ~~~l~~~l~~~~~-~~tiii~sh~~~~------------------~~~~~~~i~~l~~G~i~~~ 226 (250)
T PRK14266 182 TTKIEDLIHKLKE-DYTIVIVTHNMQQ------------------ATRVSKYTSFFLNGEIIES 226 (250)
T ss_pred HHHHHHHHHHHhc-CCeEEEEECCHHH------------------HHhhcCEEEEEECCeEEEe
Confidence 5555555543 7999999997654 4556788888887655443
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-11 Score=110.44 Aligned_cols=40 Identities=23% Similarity=0.406 Sum_probs=34.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
+++|++++|.|+||||||||++.+++...+..|. +++++.
T Consensus 45 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~ 84 (224)
T cd03220 45 VPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGT-VTVRGR 84 (224)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCE
Confidence 6799999999999999999999999988887776 566654
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.8e-11 Score=124.01 Aligned_cols=164 Identities=13% Similarity=0.123 Sum_probs=110.6
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~---gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
+=+++|++++|.||||||||||++.+++...+. .|. +++++.......+.+.+|+.+|+..+....|+.|.+.+..
T Consensus 46 ~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~-i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~ 124 (617)
T TIGR00955 46 GVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGS-VLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQA 124 (617)
T ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeE-EEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHH
Confidence 578999999999999999999999999876553 344 6777765444566778999999988888889988876543
Q ss_pred HHHhcCC-------------ceEEEEecc-cccCCC----CccCCccchhhHHHHHHHHHHH------------------
Q 017792 130 TLIRSGS-------------VDVVVVDSV-AALVPK----GELDGEMGDAHMAMQARLMSQA------------------ 173 (366)
Q Consensus 130 ~~~~~~~-------------~~lvviDsl-~~l~~~----~~l~~~~g~~~~~~~ar~l~~~------------------ 173 (366)
.+-.... .+.+-++.. ...... ..+++ |++++...|+++...
T Consensus 125 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSg--GqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~ 202 (617)
T TIGR00955 125 HLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSG--GERKRLAFASELLTDPPLLFCDEPTSGLDSFMA 202 (617)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCc--chhhHHHHHHHHHcCCCEEEeeCCCcchhHHHH
Confidence 3210000 000111111 111111 23555 889999999887654
Q ss_pred --HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 --LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 --L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++.+.+.+.|.|||+++|..+. . +...+|.++.|.+++.+..|+
T Consensus 203 ~~l~~~L~~l~~~g~tvi~~~hq~~~----------~-------i~~~~D~i~ll~~G~~v~~G~ 250 (617)
T TIGR00955 203 YSVVQVLKGLAQKGKTIICTIHQPSS----------E-------LFELFDKIILMAEGRVAYLGS 250 (617)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCCCH----------H-------HHHHhceEEEeeCCeEEEECC
Confidence 444444555569999999996531 0 456789999999887766654
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-11 Score=124.86 Aligned_cols=148 Identities=16% Similarity=0.142 Sum_probs=94.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHH-H--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT-L-- 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~-~-- 131 (366)
+.+|++++|+||||||||||++.+++.+.+..|.+ ++++. .++++.+|+..++...++.+.+..... .
T Consensus 24 i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i-~~~~~--------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 94 (530)
T PRK15064 24 FGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNV-SLDPN--------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWE 94 (530)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecCC--------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHH
Confidence 67999999999999999999999999888877774 45432 347888887766666666665442110 0
Q ss_pred -------Hhc-C-----------------------C--------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHH
Q 017792 132 -------IRS-G-----------------------S--------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ 172 (366)
Q Consensus 132 -------~~~-~-----------------------~--------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~ 172 (366)
+.. . . ...+-++....-.+...+++ |++|+...|++++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg--Gq~qrv~lA~aL~~ 172 (530)
T PRK15064 95 VKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAP--GWKLRVLLAQALFS 172 (530)
T ss_pred HHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCH--HHHHHHHHHHHHhc
Confidence 000 0 0 00000110000011234444 78888888887765
Q ss_pred H-----------------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 173 A-----------------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 173 ~-----------------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
. ...+...+++.+.|||+++|.... +..+||+++.|+++.+
T Consensus 173 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~------------------~~~~~d~i~~l~~g~i 230 (530)
T PRK15064 173 NPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHF------------------LNSVCTHMADLDYGEL 230 (530)
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHH------------------HHhhcceEEEEeCCEE
Confidence 3 444444556679999999998765 5567788888887765
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-11 Score=138.44 Aligned_cols=160 Identities=13% Similarity=0.106 Sum_probs=109.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
.+.+|++++|.|+||||||||++.+++...+..|. +++++..... ..+++.+|+.+|+..++...|+.+.+.+...+
T Consensus 952 ~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~-I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~l 1030 (2272)
T TIGR01257 952 TFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGT-VLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQL 1030 (2272)
T ss_pred EEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceE-EEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHh
Confidence 37899999999999999999999999999888887 5676654332 23456799999998888888998887764332
Q ss_pred HhcCC----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh
Q 017792 132 IRSGS----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 181 (366)
Q Consensus 132 ~~~~~----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l 181 (366)
..... ...+-++...... ...+++ |++|+...|++++.. +.++.+.+
T Consensus 1031 kg~~~~~~~~~v~~lL~~vgL~~~~~~~-~~~LSG--GqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l 1107 (2272)
T TIGR01257 1031 KGRSWEEAQLEMEAMLEDTGLHHKRNEE-AQDLSG--GMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY 1107 (2272)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 10000 0111111111111 234444 788888888877653 55666665
Q ss_pred hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 182 ~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+ .|.|||+++|..+. +..+||+++.|.++++...|.
T Consensus 1108 ~-~g~TIIltTHdmde------------------a~~laDrI~iL~~GkL~~~Gs 1143 (2272)
T TIGR01257 1108 R-SGRTIIMSTHHMDE------------------ADLLGDRIAIISQGRLYCSGT 1143 (2272)
T ss_pred h-CCCEEEEEECCHHH------------------HHHhCCEEEEEECCEEEEecC
Confidence 4 48999999998765 455789999998887666553
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.4e-11 Score=99.53 Aligned_cols=118 Identities=19% Similarity=0.276 Sum_probs=79.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHH--HHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ--ALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~--~l~~~~~~~ 132 (366)
+++|++++|.|+||||||||++.+++...+..|. +++++. ..+++.++ .+.-+ -+.++..++
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~~~--------~~i~~~~~-------lS~G~~~rv~laral~ 86 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGI-VTWGST--------VKIGYFEQ-------LSGGEKMRLALAKLLL 86 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceE-EEECCe--------EEEEEEcc-------CCHHHHHHHHHHHHHh
Confidence 6799999999999999999999999998887786 566652 35666665 44333 233444443
Q ss_pred hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccC
Q 017792 133 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCG 212 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~g 212 (366)
.+++++++|....-.. . ..+ ..+..+.+. .+.|||+++|..+.
T Consensus 87 --~~p~illlDEP~~~LD----------~----~~~---~~l~~~l~~---~~~til~~th~~~~--------------- 129 (144)
T cd03221 87 --ENPNLLLLDEPTNHLD----------L----ESI---EALEEALKE---YPGTVILVSHDRYF--------------- 129 (144)
T ss_pred --cCCCEEEEeCCccCCC----------H----HHH---HHHHHHHHH---cCCEEEEEECCHHH---------------
Confidence 3689999999876652 0 111 122222222 25799999997654
Q ss_pred CceeeeeceEEEEEEE
Q 017792 213 GNALKFYASVRLNIKR 228 (366)
Q Consensus 213 G~~l~~~ad~~i~l~~ 228 (366)
+..+||+++.|.+
T Consensus 130 ---~~~~~d~v~~l~~ 142 (144)
T cd03221 130 ---LDQVATKIIELED 142 (144)
T ss_pred ---HHHhCCEEEEEeC
Confidence 4446777777754
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-11 Score=124.37 Aligned_cols=157 Identities=20% Similarity=0.213 Sum_probs=95.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEeCCCCCC---HH---HH-hhcccccCcce--ecCCCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD---PS---LA-ETIGVKTENLL--LAQPDC 120 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-----~gg~vl~id~e~~~~---~~---~~-~~ig~~~~~~~--~~~~~~ 120 (366)
+.+|++++|+||||||||||++.+++.+.+ ..|. ++++++.... .. ++ +.+|+.+|+.. +....+
T Consensus 32 i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~ 110 (529)
T PRK15134 32 IEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGD-IRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHT 110 (529)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceE-EEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhh
Confidence 679999999999999999999999998875 3565 5666654321 11 12 46899999864 334456
Q ss_pred HHHHHHHHHHHHhcC-----------CceEEEEeccccc--CCCCccCCccchhhHHHHHHHHHHH--------------
Q 017792 121 GEQALSLVDTLIRSG-----------SVDVVVVDSVAAL--VPKGELDGEMGDAHMAMQARLMSQA-------------- 173 (366)
Q Consensus 121 ~e~~l~~~~~~~~~~-----------~~~lvviDsl~~l--~~~~~l~~~~g~~~~~~~ar~l~~~-------------- 173 (366)
+.+.+.......... -...+-++..... .+...+++ |++|+...||+++..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSg--Ge~qrv~iAraL~~~p~llllDEPt~~LD 188 (529)
T PRK15134 111 LEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSG--GERQRVMIAMALLTRPELLIADEPTTALD 188 (529)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCH--HHHHHHHHHHHHhcCCCEEEEcCCCCccC
Confidence 655543211100000 0111111111000 01245555 888998898888754
Q ss_pred ------HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 174 ------LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 174 ------L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
+.++...+++ .+.|||+++|..+. +..+||+++.|+++.++
T Consensus 189 ~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~------------------~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 189 VSVQAQILQLLRELQQELNMGLLFITHNLSI------------------VRKLADRVAVMQNGRCV 236 (529)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEcCcHHH------------------HHHhcCEEEEEECCEEE
Confidence 5555555544 48999999998765 34456666666665543
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.8e-11 Score=123.44 Aligned_cols=154 Identities=15% Similarity=0.144 Sum_probs=97.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHH-----HH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQA-----LS 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~-----l~ 126 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.+..+ ..+.+.+++.+|+..++.....++. -+
T Consensus 365 i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~-i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~ 443 (555)
T TIGR01194 365 IAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGE-ILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLD 443 (555)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHH
Confidence 7799999999999999999999999999988887 6677765433 4567789999998766543221110 11
Q ss_pred HHHHHHhcCCceEEEEecccc-cCCCCccCCccchhhHHHHHHHHHHH--------------------H-HHHHHHhhhc
Q 017792 127 LVDTLIRSGSVDVVVVDSVAA-LVPKGELDGEMGDAHMAMQARLMSQA--------------------L-RKLSHSLSLS 184 (366)
Q Consensus 127 ~~~~~~~~~~~~lvviDsl~~-l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L-~~L~~~l~~~ 184 (366)
.+...++.-...- .++.+.. +.....+++ |++|+...||++.+. + ..+.+.++..
T Consensus 444 ~~~~~~~~~~l~~-~~~~lp~g~~t~~~LSg--Gq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~ 520 (555)
T TIGR01194 444 NAQQYLQRLEIAD-KVKIEDGGFSTTTALST--GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQ 520 (555)
T ss_pred HHHHHHHHcCCch-hhcccccccCCcccCCH--HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC
Confidence 1112222111110 0111110 001133554 899999999988764 3 2233333456
Q ss_pred CcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 185 QTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 185 ~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+.|+|+++|..+. + ..||+++.|+++++
T Consensus 521 ~~tiiiisH~~~~------------------~-~~~d~i~~l~~G~i 548 (555)
T TIGR01194 521 GKTIIIISHDDQY------------------F-ELADQIIKLAAGCI 548 (555)
T ss_pred CCEEEEEeccHHH------------------H-HhCCEEEEEECCEE
Confidence 8999999996432 2 35899999987653
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.6e-11 Score=127.84 Aligned_cols=153 Identities=20% Similarity=0.257 Sum_probs=100.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCC------------C
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQP------------D 119 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~------------~ 119 (366)
+++|+.++|+|+||||||||++.+++.+.+..|. +++++.+..+ ..+++.+++++|+..++.. .
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~-I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~ 566 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGS-VLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYA 566 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCC
Confidence 7899999999999999999999999999998886 6777654332 4678889999998776542 1
Q ss_pred CHHHHHHHHHH-----HHhcCCceEEEEecccccCCC--CccCCccchhhHHHHHHHHHHH-------------------
Q 017792 120 CGEQALSLVDT-----LIRSGSVDVVVVDSVAALVPK--GELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 120 ~~e~~l~~~~~-----~~~~~~~~lvviDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
+-+++.+.+.. .+.... +.+...... ..+++ |++|+...||++.+.
T Consensus 567 ~~~~i~~a~~~~~l~~~i~~lp------~gl~T~i~e~G~~LSg--GQrQRlalARall~~p~iliLDE~Ts~LD~~te~ 638 (694)
T TIGR03375 567 DDEEILRAAELAGVTEFVRRHP------DGLDMQIGERGRSLSG--GQRQAVALARALLRDPPILLLDEPTSAMDNRSEE 638 (694)
T ss_pred CHHHHHHHHHHcChHHHHHhCc------ccccceecCCCCCCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 22333222221 111110 111111111 23444 889999999987754
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.+....+. .++|+|+++|..+. + ..||+++.|++++++..|+
T Consensus 639 ~i~~~l~~~~-~~~T~iiItHrl~~------------------~-~~~D~iivl~~G~i~e~G~ 682 (694)
T TIGR03375 639 RFKDRLKRWL-AGKTLVLVTHRTSL------------------L-DLVDRIIVMDNGRIVADGP 682 (694)
T ss_pred HHHHHHHHHh-CCCEEEEEecCHHH------------------H-HhCCEEEEEeCCEEEeeCC
Confidence 323222222 37999999996542 2 3589999999887665553
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.9e-11 Score=114.22 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=96.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEeCCCCCC-----HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~-----~~gg~vl~id~e~~~~-----~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
|.+|++++|+|+||||||||++.+++.+. +..|. +++++..... ..+.+.++|.+|+..+++ .++.+.
T Consensus 68 i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~-I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~en 145 (305)
T PRK14264 68 IPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGS-VELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIREN 145 (305)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceE-EEECCEEcccccccHHHHhhceEEEccCCcccc-ccHHHH
Confidence 67999999999999999999999999875 34665 6676654321 234567999999876654 477776
Q ss_pred HHHHHHHHhcC--------------C---------ceEEEEe-cccccC--CCCccCCccchhhHHHHHHHHHHH-----
Q 017792 125 LSLVDTLIRSG--------------S---------VDVVVVD-SVAALV--PKGELDGEMGDAHMAMQARLMSQA----- 173 (366)
Q Consensus 125 l~~~~~~~~~~--------------~---------~~lvviD-sl~~l~--~~~~l~~~~g~~~~~~~ar~l~~~----- 173 (366)
+.+........ . .+.+-++ .+.... +...+++ |++|+...||+++..
T Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg--Gq~qrv~LAraL~~~p~lLL 223 (305)
T PRK14264 146 ISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSG--GQQQRLCIARCLAVDPEVIL 223 (305)
T ss_pred HHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCH--HHHHHHHHHHHHhcCCCEEE
Confidence 65432110000 0 0000000 000111 1123443 788888888887754
Q ss_pred ---------------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEE-EEEEEeceeec
Q 017792 174 ---------------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVR-LNIKRIGLVKK 234 (366)
Q Consensus 174 ---------------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~-i~l~~~~~~~~ 234 (366)
+.++.+.+.+ +.|||+++|.... +..+||++ +.|+++.++..
T Consensus 224 LDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~------------------i~~~~d~i~~~l~~G~i~~~ 281 (305)
T PRK14264 224 MDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQ------------------AARISDQTAVFLTGGELVEY 281 (305)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHH------------------HHHhcCEEEEEecCCEEEEe
Confidence 5555555544 5899999997654 45578876 45676654443
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.4e-11 Score=127.19 Aligned_cols=158 Identities=21% Similarity=0.266 Sum_probs=101.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHH----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSL---- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~---- 127 (366)
+++|+.++|+||||||||||++.+++.+.+.+|. +++|+.+..+ ..+.+++++.+|++.++.. |+.+++..
T Consensus 504 i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~-I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~~ 581 (711)
T TIGR00958 504 LHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ-VLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLTD 581 (711)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCE-EEECCEEHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCCC
Confidence 7899999999999999999999999999998886 6777764322 4677889999998877643 33333321
Q ss_pred -----HHHHHhcCCceEEEEec----ccccCC--CCccCCccchhhHHHHHHHHHHH-----------------HHHHHH
Q 017792 128 -----VDTLIRSGSVDVVVVDS----VAALVP--KGELDGEMGDAHMAMQARLMSQA-----------------LRKLSH 179 (366)
Q Consensus 128 -----~~~~~~~~~~~lvviDs----l~~l~~--~~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~ 179 (366)
+...++.-...- .+++ +..... ...+++ |++|+...||++.+. -..+..
T Consensus 582 ~~~e~i~~al~~a~l~~-~i~~lp~GldT~ige~G~~LSG--GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~ 658 (711)
T TIGR00958 582 TPDEEIMAAAKAANAHD-FIMEFPNGYDTEVGEKGSQLSG--GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE 658 (711)
T ss_pred CCHHHHHHHHHHcCCHH-HHHhCCCccCCcccCCCCcCCH--HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH
Confidence 111111101100 0111 111111 123444 899999999998764 122222
Q ss_pred HhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 180 SLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 180 ~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
.....++|+|+++|..+. + ..||+++.|+++.+...|+
T Consensus 659 ~~~~~~~TvIiItHrl~~------------------i-~~aD~IivL~~G~ive~Gt 696 (711)
T TIGR00958 659 SRSRASRTVLLIAHRLST------------------V-ERADQILVLKKGSVVEMGT 696 (711)
T ss_pred hhccCCCeEEEEeccHHH------------------H-HhCCEEEEEECCEEEEeeC
Confidence 223458999999996543 2 2489999998877665543
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.8e-11 Score=99.76 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=55.4
Q ss_pred CChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceec
Q 017792 41 TGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 116 (366)
Q Consensus 41 TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~ 116 (366)
++-+-||.+-- -+.+|+.+.|.||+|||||||+++++.+..+..|. +++.+|.... +.++.++.|..|.+.++
T Consensus 14 ~~a~il~~isl--~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~-l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 14 GDAKILNNISL--SVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGT-LLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred CCCeeecceee--eecCCceEEEeCCCCccHHHHHHHHHhccCCCCce-EEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 33344444322 47799999999999999999999999999988885 7777776443 46788888888776554
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.9e-11 Score=110.59 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=33.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
+++|++++|+|+||||||||++.+++.+.+..|.+ ++++
T Consensus 47 i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I-~~~g 85 (264)
T PRK13546 47 AYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV-DRNG 85 (264)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECC
Confidence 67999999999999999999999999988877764 4444
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-10 Score=97.11 Aligned_cols=156 Identities=16% Similarity=0.226 Sum_probs=104.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC----C----HHHHhhcccccCcceecCCCCHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----D----PSLAETIGVKTENLLLAQPDCGEQALS 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~----~----~~~~~~ig~~~~~~~~~~~~~~e~~l~ 126 (366)
-+.|+.+++.||+|+|||||++.+...-.+.+|....-+.+-.+ . ..+++.+|+++|...+++..++-+.+-
T Consensus 25 ~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enli 104 (242)
T COG4161 25 CPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLI 104 (242)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHH
Confidence 57899999999999999999988877666777753322222111 1 256788999999998888777655432
Q ss_pred HH----------------HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 127 LV----------------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 127 ~~----------------~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
.. ..+++. +-+.....-+| -.+++ |++|+..+||++...
T Consensus 105 eap~kv~gl~~~qa~~~a~ellkr-----lrl~~~adr~p-lhlsg--gqqqrvaiaralmmkpqvllfdeptaaldpei 176 (242)
T COG4161 105 EAPCRVLGLSKDQALARAEKLLKR-----LRLKPYADRYP-LHLSG--GQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176 (242)
T ss_pred hhhHHHhCCCHHHHHHHHHHHHHH-----hccccccccCc-eeccc--chhhhHHHHHHHhcCCcEEeecCcccccCHHH
Confidence 21 112211 11222333332 33444 899999999987543
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+-.+++.+...|+|-++++|..+. ....+++++.|.++.++..|+
T Consensus 177 taqvv~iikel~~tgitqvivthev~v------------------a~k~as~vvyme~g~ive~g~ 224 (242)
T COG4161 177 TAQIVSIIKELAETGITQVIVTHEVEV------------------ARKTASRVVYMENGHIVEQGD 224 (242)
T ss_pred HHHHHHHHHHHHhcCceEEEEEeehhH------------------HHhhhhheEeeecCeeEeecc
Confidence 667788888999999999995543 233577888888877666553
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.6e-11 Score=116.94 Aligned_cols=158 Identities=17% Similarity=0.224 Sum_probs=100.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC---CCHHHHhhcccccCcceecCCC------------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPD------------ 119 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~---~~~~~~~~ig~~~~~~~~~~~~------------ 119 (366)
+++|+.++|+|+||||||||+..+++.+.+..|. +.+++-+. ....|.+++.+++|+++++...
T Consensus 344 ~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~-I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~ 422 (559)
T COG4988 344 IKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGE-IRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDA 422 (559)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCce-EEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcC
Confidence 7899999999999999999999999999888786 55664433 3368899999999998876531
Q ss_pred CHHHHHHHHHHHHhcCCceEEE-EecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 120 CGEQALSLVDTLIRSGSVDVVV-VDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 120 ~~e~~l~~~~~~~~~~~~~lvv-iDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
+-+++.+.+... +-.+.+- -+.+..........-+.|+.||...||++... +.+..
T Consensus 423 s~e~i~~al~~a---~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l 499 (559)
T COG4988 423 SDEEIIAALDQA---GLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQAL 499 (559)
T ss_pred CHHHHHHHHHHh---cHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHH
Confidence 223333332221 0000000 12233222222211223888888888876543 22222
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
..+. .+.|||+++|.... ..-+|+++.|++++.+..|.
T Consensus 500 ~~l~-~~ktvl~itHrl~~-------------------~~~~D~I~vld~G~l~~~g~ 537 (559)
T COG4988 500 QELA-KQKTVLVITHRLED-------------------AADADRIVVLDNGRLVEQGT 537 (559)
T ss_pred HHHH-hCCeEEEEEcChHH-------------------HhcCCEEEEecCCceeccCC
Confidence 2222 36999999996543 33579999999887666654
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.8e-11 Score=124.30 Aligned_cols=151 Identities=21% Similarity=0.235 Sum_probs=98.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQAL------ 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l------ 125 (366)
+++|+.++|+|+||||||||++.+++.+.+..|. +++++.+..+ ..+.+.++|.+|++.++.. |+.+++
T Consensus 358 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~-I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~ 435 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGR-ILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGRPD 435 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE-EEECCEEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCCCC
Confidence 6799999999999999999999999999998886 6777754332 4678889999998876642 333332
Q ss_pred -------HHHHH-----HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 126 -------SLVDT-----LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 126 -------~~~~~-----~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
..+.. .+...... +|....-. ...+++ |++|+...||++.+.
T Consensus 436 ~~d~~i~~al~~~~l~~~i~~lp~g---ldt~i~~~-g~~LSg--Gq~QRialARall~~~~iliLDEpts~LD~~t~~~ 509 (588)
T PRK13657 436 ATDEEMRAAAERAQAHDFIERKPDG---YDTVVGER-GRQLSG--GERQRLAIARALLKDPPILILDEATSALDVETEAK 509 (588)
T ss_pred CCHHHHHHHHHHhCHHHHHHhCccc---ccchhcCC-CCCCCH--HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 22111 11111100 12211111 123544 899999999998764
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+.+....+ ..++|+|+++|..+. ...||.++.|.++.+..
T Consensus 510 i~~~l~~~-~~~~tvIiitHr~~~-------------------~~~~D~ii~l~~G~i~~ 549 (588)
T PRK13657 510 VKAALDEL-MKGRTTFIIAHRLST-------------------VRNADRILVFDNGRVVE 549 (588)
T ss_pred HHHHHHHH-hcCCEEEEEEecHHH-------------------HHhCCEEEEEECCEEEE
Confidence 33322222 247999999996542 23589999998765443
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=4e-11 Score=126.77 Aligned_cols=150 Identities=15% Similarity=0.159 Sum_probs=99.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---CHHHHhhcccccCcceecCCCCHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQAL------ 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~~~~~~~ig~~~~~~~~~~~~~~e~~l------ 125 (366)
+++|+.++|+|++|||||||++.+++.+.+..|. +++++.+.. ...+++.+++++|+..+++. |+.+++
T Consensus 497 i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~-I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~ 574 (708)
T TIGR01193 497 IKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE-ILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKE 574 (708)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcE-EEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCCC
Confidence 7899999999999999999999999999998886 677775432 24678899999998776543 333322
Q ss_pred --------HHHHH-----HHhcCCceEEEEecccccCC--CCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 126 --------SLVDT-----LIRSGSVDVVVVDSVAALVP--KGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 126 --------~~~~~-----~~~~~~~~lvviDsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+.+.. .+.... +.+..... ...+++ |++|+...||++.+.
T Consensus 575 ~~~~~~i~~a~~~a~l~~~i~~lp------~gldt~i~e~G~~LSg--GQrQRialARall~~p~iliLDE~Ts~LD~~t 646 (708)
T TIGR01193 575 NVSQDEIWAACEIAEIKDDIENMP------LGYQTELSEEGSSISG--GQKQRIALARALLTDSKVLILDESTSNLDTIT 646 (708)
T ss_pred CCCHHHHHHHHHHhCCHHHHHhcc------cccCcEecCCCCCCCH--HHHHHHHHHHHHhhCCCEEEEeCccccCCHHH
Confidence 22221 111110 11111121 133444 899999999998764
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.+....+ .++|+|+++|..+. + ..||+++.|+++++...|
T Consensus 647 e~~i~~~L~~~--~~~T~IiitHr~~~------------------~-~~~D~i~~l~~G~i~~~G 690 (708)
T TIGR01193 647 EKKIVNNLLNL--QDKTIIFVAHRLSV------------------A-KQSDKIIVLDHGKIIEQG 690 (708)
T ss_pred HHHHHHHHHHh--cCCEEEEEecchHH------------------H-HcCCEEEEEECCEEEEEC
Confidence 22222222 47999999996542 2 358999999887665544
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.7e-11 Score=121.90 Aligned_cols=158 Identities=19% Similarity=0.247 Sum_probs=99.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---CHHHHhhcccccCcceecCCCCHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVD-- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-- 129 (366)
+++|+.++|+|+||||||||++.+++.+.+..|. +++++.... ...+.+.+++.+|+..+++. |+.+++....
T Consensus 341 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~-i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~ 418 (544)
T TIGR01842 341 LQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGS-VRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGEN 418 (544)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCCC
Confidence 7899999999999999999999999999988887 566665332 23567789999998876643 4444432110
Q ss_pred -------HHHhcCCce-E--EEEecccccCC--CCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 130 -------TLIRSGSVD-V--VVVDSVAALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 130 -------~~~~~~~~~-l--vviDsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
...+..... . -.-+.+..... ...+++ |++|+...||++.+. +.+.
T Consensus 419 ~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSg--Gq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~ 496 (544)
T TIGR01842 419 ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSG--GQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANA 496 (544)
T ss_pred CCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCH--HHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHH
Confidence 000000000 0 00011111111 123444 899999999987754 3343
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
...+...+.|+|+++|..+. + ..||+++.|++++++..|
T Consensus 497 l~~~~~~~~tvi~ith~~~~------------------~-~~~d~i~~l~~G~i~~~g 535 (544)
T TIGR01842 497 IKALKARGITVVVITHRPSL------------------L-GCVDKILVLQDGRIARFG 535 (544)
T ss_pred HHHHhhCCCEEEEEeCCHHH------------------H-HhCCEEEEEECCEEEeeC
Confidence 43333458999999996532 2 358999999887665544
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4e-11 Score=117.04 Aligned_cols=158 Identities=19% Similarity=0.198 Sum_probs=98.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC--CC-HHHHhhcccccCcceecCCCCHHHHHHHHHH-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LD-PSLAETIGVKTENLLLAQPDCGEQALSLVDT- 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~--~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~- 130 (366)
+++|+.++|+||+|||||||++.+.+.+.+..|. +.+|+-+. ++ ..+-+++||.||++.+++. |+.|++..+..
T Consensus 359 l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~-VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~~ 436 (580)
T COG4618 359 LQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGS-VRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFGEE 436 (580)
T ss_pred ecCCceEEEECCCCccHHHHHHHHHcccccCCCc-EEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHhcccc
Confidence 6799999999999999999999999999988886 67776543 33 4678899999999988764 23333222110
Q ss_pred -----------HHhcCCceEEEEecccccCC--CCccCCccchhhHHHHHHHHHH--------------------HHHHH
Q 017792 131 -----------LIRSGSVDVVVVDSVAALVP--KGELDGEMGDAHMAMQARLMSQ--------------------ALRKL 177 (366)
Q Consensus 131 -----------~~~~~~~~lvviDsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~--------------------~L~~L 177 (366)
+..-++.-+-.-|....... ...+++ |++|+...||++-. +|.+-
T Consensus 437 ~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSg--GQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~A 514 (580)
T COG4618 437 ADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSG--GQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA 514 (580)
T ss_pred CCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCc--hHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHH
Confidence 00000000000111111111 112222 55555555555432 25555
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
...+++.|+++|+++|..+ +-..+|.++.|+.+.+..-|
T Consensus 515 i~~~k~rG~~vvviaHRPs-------------------~L~~~Dkilvl~~G~~~~FG 553 (580)
T COG4618 515 ILAAKARGGTVVVIAHRPS-------------------ALASVDKILVLQDGRIAAFG 553 (580)
T ss_pred HHHHHHcCCEEEEEecCHH-------------------HHhhcceeeeecCChHHhcC
Confidence 5666789999999999544 34467999999887654444
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.4e-11 Score=122.48 Aligned_cols=157 Identities=20% Similarity=0.247 Sum_probs=99.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
+++|+.++|+||||||||||++.+++.+.+..|. +++++.+..+ ..+.+.+++.+|+..++. .|+.+++...
T Consensus 358 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~~ 435 (585)
T TIGR01192 358 AKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQ-ILIDGIDINTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGREG 435 (585)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCE-EEECCEEhhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCCCC
Confidence 6799999999999999999999999999888886 5667654322 456788999999887664 3555444321
Q ss_pred ------HHHHhcCCceEE---EEecccccCC--CCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 129 ------DTLIRSGSVDVV---VVDSVAALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 129 ------~~~~~~~~~~lv---viDsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
..........-. ..+.+..... ...+++ |++|+...||++... +.+.
T Consensus 436 ~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSg--Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~ 513 (585)
T TIGR01192 436 ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG--GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNA 513 (585)
T ss_pred CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCH--HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHH
Confidence 000000000000 0011111111 123444 899999999988764 3333
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
...+. .+.|||+++|..+. +. .||.++.|.++++...|
T Consensus 514 l~~~~-~~~tvI~isH~~~~------------------~~-~~d~i~~l~~G~i~~~g 551 (585)
T TIGR01192 514 IDALR-KNRTTFIIAHRLST------------------VR-NADLVLFLDQGRLIEKG 551 (585)
T ss_pred HHHHh-CCCEEEEEEcChHH------------------HH-cCCEEEEEECCEEEEEC
Confidence 33332 48999999997643 32 38999999877655443
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-10 Score=117.95 Aligned_cols=158 Identities=20% Similarity=0.259 Sum_probs=102.9
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCC-----------
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPD----------- 119 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~----------- 119 (366)
-|+||++++|+||+|+||||++..+...+.|.+|. +.+|+....+ .-+.+++|++-|++.++...
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~-IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~ 568 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGR-ILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDN 568 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCe-EEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCC
Confidence 48999999999999999999999999999999997 6778775533 45678899999888766432
Q ss_pred -CHHHHHHHHHHHHhcCCceEEEEecccccCCCC--ccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 120 -CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKG--ELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 120 -~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~--~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
+-+++...+.. ...+..-.-.-|......... .++| |++|+..+||++.+. +++
T Consensus 569 ~t~e~i~~AAk~-ANah~FI~~~p~gY~T~VGEkG~qLSG--GQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~ 645 (716)
T KOG0058|consen 569 ATDEEIEAAAKM-ANAHEFITNFPDGYNTVVGEKGSQLSG--GQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQE 645 (716)
T ss_pred CCHHHHHHHHHH-hChHHHHHhCccccccccCCccccccc--hHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHH
Confidence 22333322221 111111111123333333333 4444 899999999998764 333
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
....+. .+.|||+|.|..+-+. -||.++.+.++.+...|
T Consensus 646 aL~~~~-~~rTVlvIAHRLSTV~-------------------~Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 646 ALDRLM-QGRTVLVIAHRLSTVR-------------------HADQIVVIDKGRVVEMG 684 (716)
T ss_pred HHHHhh-cCCeEEEEehhhhHhh-------------------hccEEEEEcCCeEEecc
Confidence 332221 3699999999776533 25777888877655544
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.1e-11 Score=121.78 Aligned_cols=154 Identities=19% Similarity=0.148 Sum_probs=96.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---CHHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
+++|+.++|+||||||||||++.+++.+.+..|. +++++.+.. ...+.+.+++.+|++.++.. |+.+++...
T Consensus 338 i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~-i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~ 415 (569)
T PRK10789 338 LKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGD-IRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRPD 415 (569)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCE-EEECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCCC
Confidence 7899999999999999999999999999988887 566665432 24667889999998877653 555443221
Q ss_pred ------HHHHhcCCceEE---EEecccccCC--CCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 129 ------DTLIRSGSVDVV---VVDSVAALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 129 ------~~~~~~~~~~lv---viDsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
..........-. .-+.+..... ...+++ |++|+...||++.+. +.+.
T Consensus 416 ~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSg--Gq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~ 493 (569)
T PRK10789 416 ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSG--GQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHN 493 (569)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCH--HHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHH
Confidence 111110000000 0011111111 123444 899999999988764 3333
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
...+. .++|+|+++|..+. + ..||+++.|.++.+.
T Consensus 494 l~~~~-~~~tii~itH~~~~------------------~-~~~d~i~~l~~G~i~ 528 (569)
T PRK10789 494 LRQWG-EGRTVIISAHRLSA------------------L-TEASEILVMQHGHIA 528 (569)
T ss_pred HHHHh-CCCEEEEEecchhH------------------H-HcCCEEEEEeCCEEE
Confidence 33322 58999999996542 2 237888888766543
|
|
| >KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3e-12 Score=120.69 Aligned_cols=315 Identities=24% Similarity=0.236 Sum_probs=223.4
Q ss_pred CchHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHH
Q 017792 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 1 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
|+.+..+++.++++++..|+ .-.+.+....+...+..+++|-...+..++.+|.+.+..+..+++.-+||++..++...
T Consensus 3 ~~~~~~~~~~al~~~~~~~~-~~~~~~~~~ita~~v~~l~~~~l~~v~~l~~~~~~el~~i~~~s~~~~~k~~~~l~~~~ 81 (326)
T KOG1433|consen 3 MSQKRLALQKALEEIGLSPA-PVRFLLAGGITAEDVLLLSEGELSTVEGLAYAGKEELLLIIGLSEAKSGKTVLGLHKLV 81 (326)
T ss_pred hhHHHHHhhHHHHhcccCcc-chhhhhcccccHhhhhhhcccceEEEeccccCcchhheeeeeecccccccHHHHHHHhh
Confidence 35677899999999998877 54555555667788999999999999999889999999999999999999999999988
Q ss_pred H-HhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH-hcCCceEEEEecccc--cCCCCccCC
Q 017792 81 E-AQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI-RSGSVDVVVVDSVAA--LVPKGELDG 156 (366)
Q Consensus 81 ~-~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~-~~~~~~lvviDsl~~--l~~~~~l~~ 156 (366)
. +++.+..+.+.++....|+.+...++...-...+.+|.+....+-...... ..+..++++||+.+. +.+..++.+
T Consensus 82 ~~~~~~~~~~~l~Tg~~~lD~lL~gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~~gge~~~l~IDs~s~~~~~~~~~ia~ 161 (326)
T KOG1433|consen 82 PMLQLRSELGFLSTGSKALDKLLGGGIETGSLTELVGPPGSGKTQLCHTLAVTCGGGEGKVLYIDTESTFRLERLTEIAG 161 (326)
T ss_pred HHHHhhccceeeccchhhhhHhhccCcccCceeEEecCCCccHHHHHHHHHHhccCCcceEEEEecchhcccchhhhhhh
Confidence 6 366778888999999999888888888877888889988887766444332 567789999999995 333445555
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccccc-CCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 157 EMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFG-FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 157 ~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~-~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.+...+..+.+.+....++..+.+.......++++|.+...-..+ +.....+..+| ...+.+..+........++..
T Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~l~~vds~ta~~~~~~~g-~~~~~a~~~~~~~~~~~l~~l 240 (326)
T KOG1433|consen 162 RSGLRGRDTLSNLMLARAYNLDHQLQLIQEAEIMINQSRVKLLIVDSATALYRTTFKG-RGELSARQMLLAKFLRSLKKL 240 (326)
T ss_pred hhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccceeEEEeccccccccccccc-ccchHHHHHHHHHHHHHHHHH
Confidence 5555555555566655555555444444444466666544322211 33333455556 566666665554444445555
Q ss_pred ccccccEEEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEecCcccccHHHHHHHHhhCHHH
Q 017792 236 EETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNFRGKEAFKQFLVENESV 315 (366)
Q Consensus 236 ~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ 315 (366)
.+..|..+ |++|...++.+.. +.|+. +....+......+.++.+.|.|| .++++..++.....+|.+++..
T Consensus 241 a~~~g~~v---vitn~v~~~~d~~---~~f~~--~~~~~~~~~~~~H~~~tr~~~~~-~~g~~~~~k~~~s~~l~e~~~~ 311 (326)
T KOG1433|consen 241 ADEFGVAV---VITNQVTAQVDGA---IMFGS--DPKKPIGGNIWAHAVTTRLGLRK-GKGERRICKIADSPCLPEAEAV 311 (326)
T ss_pred HHhcCceE---EEecccccccccc---cccCc--ccccccccchHHHHHHHHHHHHh-ccccchhhhhhcCCCCCcchhH
Confidence 55666654 8999998887655 55554 22333334444555566677777 6777789999999999999999
Q ss_pred HHHHHHHHHHH
Q 017792 316 REELVIKLREK 326 (366)
Q Consensus 316 ~~~l~~~~~~~ 326 (366)
++.+...+...
T Consensus 312 ~~i~~~g~~~~ 322 (326)
T KOG1433|consen 312 FAITEDGISDQ 322 (326)
T ss_pred HHHHhhhhhhh
Confidence 98888777654
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.4e-11 Score=124.44 Aligned_cols=153 Identities=17% Similarity=0.217 Sum_probs=99.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQAL------ 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l------ 125 (366)
+++|+.++|+|+||||||||++.+++.+.+..|. +++++.+..+ ..+++.+++++|+..++.. |+.+++
T Consensus 480 i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~-I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~~~ 557 (694)
T TIGR01846 480 IKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQ-VLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCNPG 557 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCCCC
Confidence 7899999999999999999999999999998886 6777765332 4677889999998776542 333332
Q ss_pred -------HHHHH-----HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 126 -------SLVDT-----LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 126 -------~~~~~-----~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
+.+.. .+...... +|....-. ...+++ |++|+...||++.+.
T Consensus 558 ~~~~~i~~a~~~~~l~~~i~~lp~g---l~t~i~~~-g~~LSg--Gq~qri~lARall~~~~ililDEpts~LD~~~~~~ 631 (694)
T TIGR01846 558 APFEHVIHAAKLAGAHDFISELPQG---YNTEVGEK-GANLSG--GQRQRIAIARALVGNPRILIFDEATSALDYESEAL 631 (694)
T ss_pred CCHHHHHHHHHHcChHHHHHhCcCc---cCcEecCC-CCCCCH--HHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHH
Confidence 22211 11111000 11111111 123444 899999999988764
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.+....+ ..++|+|+++|..+. +. .||+++.|.++++...|
T Consensus 632 i~~~l~~~-~~~~t~i~itH~~~~------------------~~-~~d~ii~l~~G~i~~~g 673 (694)
T TIGR01846 632 IMRNMREI-CRGRTVIIIAHRLST------------------VR-ACDRIIVLEKGQIAESG 673 (694)
T ss_pred HHHHHHHH-hCCCEEEEEeCChHH------------------HH-hCCEEEEEeCCEEEEeC
Confidence 22323322 248999999996543 33 38999999887655444
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-10 Score=114.64 Aligned_cols=158 Identities=21% Similarity=0.213 Sum_probs=103.0
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCC------------
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQP------------ 118 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~------------ 118 (366)
-||+|+-++|+|+|||||||+++.+...+. +.|. +++|+.+... ..+++.+|++||+-.+++.
T Consensus 374 ~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~-I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~s 451 (591)
T KOG0057|consen 374 TIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGS-ILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPS 451 (591)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCc-EEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCC
Confidence 589999999999999999999999999888 6676 7899887654 4678889999997765543
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH---------------------HHHH
Q 017792 119 DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA---------------------LRKL 177 (366)
Q Consensus 119 ~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------------L~~L 177 (366)
.+-+++++.....-- ++.-.-.-|..+.......+.-+.|++|+...+|++.+. ++.+
T Consensus 452 as~eeV~e~~k~a~~-hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i 530 (591)
T KOG0057|consen 452 ASDEEVVEACKRAGL-HDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMI 530 (591)
T ss_pred cCHHHHHHHHHHcCc-HHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHH
Confidence 244555555443210 000000012222222222222233899999999988764 3333
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
.. ...+.|+|+|-|..+- ..-+|.++.++++.+...|
T Consensus 531 ~~--~~~~rTvI~IvH~l~l-------------------l~~~DkI~~l~nG~v~e~g 567 (591)
T KOG0057|consen 531 MD--VMSGRTVIMIVHRLDL-------------------LKDFDKIIVLDNGTVKEYG 567 (591)
T ss_pred HH--hcCCCeEEEEEecchh-------------------HhcCCEEEEEECCeeEEec
Confidence 33 2468999999996653 2347888888887644433
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-10 Score=120.09 Aligned_cols=147 Identities=15% Similarity=0.123 Sum_probs=96.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHH-HHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV-DTL-- 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~-~~~-- 131 (366)
+++|++++|+||||||||||++.+++.+.+.+|.+ +++. ...+|+.+|++.+....++.+.+... ..+
T Consensus 30 i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i-~~~~--------~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~ 100 (556)
T PRK11819 30 FFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEA-RPAP--------GIKVGYLPQEPQLDPEKTVRENVEEGVAEVKA 100 (556)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecC--------CCEEEEEecCCCCCCCCcHHHHHHHhhHHHHH
Confidence 77999999999999999999999999988888875 4432 13589999988777777887776532 100
Q ss_pred ----Hh----c-CCc----------------------------------eEEEEecccccCCCCccCCccchhhHHHHHH
Q 017792 132 ----IR----S-GSV----------------------------------DVVVVDSVAALVPKGELDGEMGDAHMAMQAR 168 (366)
Q Consensus 132 ----~~----~-~~~----------------------------------~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar 168 (366)
.. . ... ..+-++.. -.+...+++ |++|+...|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~LSg--Gqkqrv~la~ 176 (556)
T PRK11819 101 ALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPW--DAKVTKLSG--GERRRVALCR 176 (556)
T ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcc--cCchhhcCH--HHHHHHHHHH
Confidence 00 0 000 00001100 011234544 8888888888
Q ss_pred HHHHH-----------------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 169 LMSQA-----------------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 169 ~l~~~-----------------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+++.. ...+...+++.+.|||+++|..+. +..+||+++.|+++.+
T Consensus 177 al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~------------------~~~~~d~i~~l~~g~i 238 (556)
T PRK11819 177 LLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYF------------------LDNVAGWILELDRGRG 238 (556)
T ss_pred HHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHH------------------HHhhcCeEEEEeCCEE
Confidence 87653 444445555566799999998765 4556788888887765
Q ss_pred e
Q 017792 232 V 232 (366)
Q Consensus 232 ~ 232 (366)
+
T Consensus 239 ~ 239 (556)
T PRK11819 239 I 239 (556)
T ss_pred E
Confidence 3
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.7e-11 Score=123.82 Aligned_cols=144 Identities=16% Similarity=0.209 Sum_probs=94.3
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+-+.+|++++|+||||||||||++.+++...+..|.+ +++ ..++|.+|+.......++.+++.......
T Consensus 360 ~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I-~~~----------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~ 428 (590)
T PRK13409 360 GEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV-DPE----------LKISYKPQYIKPDYDGTVEDLLRSITDDL 428 (590)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EEe----------eeEEEecccccCCCCCcHHHHHHHHhhhc
Confidence 4578999999999999999999999999988877864 443 15788888876666667777765431110
Q ss_pred hcC-----CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhh-cCc
Q 017792 133 RSG-----SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSL-SQT 186 (366)
Q Consensus 133 ~~~-----~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~-~~~ 186 (366)
... -...+-++..... +-..+++ |++|+...||+++.. +.++.+.+.+ .+.
T Consensus 429 ~~~~~~~~~L~~l~l~~~~~~-~~~~LSG--Ge~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 505 (590)
T PRK13409 429 GSSYYKSEIIKPLQLERLLDK-NVKDLSG--GELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREA 505 (590)
T ss_pred ChHHHHHHHHHHCCCHHHHhC-CcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 000 0001111111111 1244555 888888888877654 5555544433 589
Q ss_pred EEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 187 ILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 187 tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
|||+++|.... +..+||+++.|..
T Consensus 506 tviivsHD~~~------------------~~~~aDrvivl~~ 529 (590)
T PRK13409 506 TALVVDHDIYM------------------IDYISDRLMVFEG 529 (590)
T ss_pred EEEEEeCCHHH------------------HHHhCCEEEEEcC
Confidence 99999997764 5567888888864
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=8e-11 Score=133.41 Aligned_cols=153 Identities=16% Similarity=0.195 Sum_probs=104.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHH-----
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQAL----- 125 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l----- 125 (366)
-|++|+.++|+|++|||||||++.+.+.+.+..|. +++|+.+..+ ..+++++++++|++.++.. |+.+++
T Consensus 1261 ~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~-I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~~ 1338 (1622)
T PLN03130 1261 EISPSEKVGIVGRTGAGKSSMLNALFRIVELERGR-ILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFNE 1338 (1622)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCce-EEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCCC
Confidence 37899999999999999999999999999988886 7888876543 4678899999999877653 343332
Q ss_pred -------HHHHH-----HHhcCCceEEEEecccccCCC--CccCCccchhhHHHHHHHHHHH------------------
Q 017792 126 -------SLVDT-----LIRSGSVDVVVVDSVAALVPK--GELDGEMGDAHMAMQARLMSQA------------------ 173 (366)
Q Consensus 126 -------~~~~~-----~~~~~~~~lvviDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~------------------ 173 (366)
+.++. .+.... +.+...... ..+++ |++|+...||++.+.
T Consensus 1339 ~tdeei~~Al~~a~l~~~I~~lp------~GLdt~Vge~G~nLSg--GQrQrlaLARALLr~p~ILILDEATSaLD~~Te 1410 (1622)
T PLN03130 1339 HNDADLWESLERAHLKDVIRRNS------LGLDAEVSEAGENFSV--GQRQLLSLARALLRRSKILVLDEATAAVDVRTD 1410 (1622)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCc------cccCccccCCCCCCCH--HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHH
Confidence 22221 111110 112222212 23443 899999999998765
Q ss_pred --HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 --LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 --L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.+..+.. ..++|||+|+|..+. +. .||+++.|++|+++..|+
T Consensus 1411 ~~Iq~~I~~~-~~~~TvI~IAHRL~t------------------I~-~~DrIlVLd~G~IvE~Gt 1455 (1622)
T PLN03130 1411 ALIQKTIREE-FKSCTMLIIAHRLNT------------------II-DCDRILVLDAGRVVEFDT 1455 (1622)
T ss_pred HHHHHHHHHH-CCCCEEEEEeCChHH------------------HH-hCCEEEEEECCEEEEeCC
Confidence 33333332 248999999997653 33 279999999888766654
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.4e-11 Score=121.05 Aligned_cols=153 Identities=17% Similarity=0.211 Sum_probs=97.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---CHHHHhhcccccCcceecCCCCHHH--------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQ-------- 123 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~~~~~~~ig~~~~~~~~~~~~~~e~-------- 123 (366)
+++|+.++|+|+||||||||++.+++.+.+..|. +++++.+.. ...+.+.+++.+|++.+++. |+.+
T Consensus 363 i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~-I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~~ 440 (576)
T TIGR02204 363 VRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGR-ILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGRPD 440 (576)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCE-EEECCEEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCCCC
Confidence 7799999999999999999999999999988886 567764432 24667789999998876532 2322
Q ss_pred -----HHHHHHH-----HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 124 -----ALSLVDT-----LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 124 -----~l~~~~~-----~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
+.+.+.. .+...... +|..-.-. ...+++ |++|+...||++.+.
T Consensus 441 ~~~~~~~~~l~~~~l~~~i~~l~~g---l~t~i~~~-g~~LSg--Gq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~ 514 (576)
T TIGR02204 441 ATDEEVEAAARAAHAHEFISALPEG---YDTYLGER-GVTLSG--GQRQRIAIARAILKDAPILLLDEATSALDAESEQL 514 (576)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCCCC---CCceeCCC-CCcCCH--HHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHH
Confidence 2222211 11111000 11110000 123444 899999999998764
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.+....+. .++|+|+++|..+. ...+|+++.+.++++...|
T Consensus 515 i~~~l~~~~-~~~t~IiitH~~~~-------------------~~~~d~vi~l~~g~~~~~g 556 (576)
T TIGR02204 515 VQQALETLM-KGRTTLIIAHRLAT-------------------VLKADRIVVMDQGRIVAQG 556 (576)
T ss_pred HHHHHHHHh-CCCEEEEEecchHH-------------------HHhCCEEEEEECCEEEeee
Confidence 333333332 48999999996542 2358999999877654433
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.5e-11 Score=121.62 Aligned_cols=147 Identities=21% Similarity=0.261 Sum_probs=93.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcce--ecCCCCHHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLL--LAQPDCGEQALSLVDT-- 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~--~~~~~~~e~~l~~~~~-- 130 (366)
+++|++++|+||||||||||++.+++...+..|.+ +++.. ..+||.+|+.. +....++.+.+.....
T Consensus 342 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i-~~~~~--------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~ 412 (530)
T PRK15064 342 LEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV-KWSEN--------ANIGYYAQDHAYDFENDLTLFDWMSQWRQEG 412 (530)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCc--------eEEEEEcccccccCCCCCcHHHHHHHhccCC
Confidence 67999999999999999999999999888777764 45431 46888888753 3344566665532210
Q ss_pred ----HHhcCCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH-----------------HHHHHHHhhhcCcEE
Q 017792 131 ----LIRSGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA-----------------LRKLSHSLSLSQTIL 188 (366)
Q Consensus 131 ----~~~~~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~l~~~~~tV 188 (366)
.+.. -...+-+. .... .+...+++ |++|+...||+++.. ...+...+++.+.||
T Consensus 413 ~~~~~~~~-~l~~~~l~~~~~~-~~~~~LSg--Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tv 488 (530)
T PRK15064 413 DDEQAVRG-TLGRLLFSQDDIK-KSVKVLSG--GEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTL 488 (530)
T ss_pred ccHHHHHH-HHHHcCCChhHhc-CcccccCH--HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 0000 00000010 0111 11234444 788888888877653 344444455567799
Q ss_pred EEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 189 IFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 189 I~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
|+++|.... +..+||+++.|.++.++
T Consensus 489 i~vsHd~~~------------------~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 489 IFVSHDREF------------------VSSLATRIIEITPDGVV 514 (530)
T ss_pred EEEeCCHHH------------------HHHhCCEEEEEECCeEE
Confidence 999998764 55678999888876543
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-10 Score=120.10 Aligned_cols=155 Identities=16% Similarity=0.180 Sum_probs=96.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHH---H-HHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQ---A-LSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~---~-l~~ 127 (366)
+++|+.++|+||||||||||++.+++.+.+..|. +++++.+..+ ..+.+.+++.+|+..+++..-.+. . -+.
T Consensus 346 i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~ 424 (547)
T PRK10522 346 IKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGE-ILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPAL 424 (547)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHH
Confidence 6899999999999999999999999999888886 6667654332 356778999999886654311100 0 011
Q ss_pred HHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------H-HHHHHHhhhcCc
Q 017792 128 VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------L-RKLSHSLSLSQT 186 (366)
Q Consensus 128 ~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L-~~L~~~l~~~~~ 186 (366)
+...+........ ++..........+++ |++|+...||++.+. + ..+...+++.++
T Consensus 425 ~~~~~~~~~l~~~-~~~~~~~~~G~~LSg--Gq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~ 501 (547)
T PRK10522 425 VEKWLERLKMAHK-LELEDGRISNLKLSK--GQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGK 501 (547)
T ss_pred HHHHHHHcCCchh-hhccccCCCCCCCCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 1222221111110 000000011134554 899999999988764 2 233333334589
Q ss_pred EEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 187 ILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 187 tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
|+|+++|..+ ....||+++.|+++++.
T Consensus 502 tvi~itH~~~-------------------~~~~~d~i~~l~~G~i~ 528 (547)
T PRK10522 502 TIFAISHDDH-------------------YFIHADRLLEMRNGQLS 528 (547)
T ss_pred EEEEEEechH-------------------HHHhCCEEEEEECCEEE
Confidence 9999999643 22358999999877644
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.9e-11 Score=121.49 Aligned_cols=148 Identities=15% Similarity=0.175 Sum_probs=96.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---CHHHHhhcccccCcceecCCCCHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQAL------ 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~~~~~~~ig~~~~~~~~~~~~~~e~~l------ 125 (366)
+++|+.++|+|++|||||||++.+++.+.+..|. +++++.+.. ...+.+.+++.+|++.++.. |+.+++
T Consensus 355 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~-I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~ 432 (571)
T TIGR02203 355 IEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQ-ILLDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRTE 432 (571)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCe-EEECCEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCCC
Confidence 6799999999999999999999999999998886 677765432 24677889999998876543 333322
Q ss_pred --------HHHHH-----HHhcCCceEEEEecccccCC--CCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 126 --------SLVDT-----LIRSGSVDVVVVDSVAALVP--KGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 126 --------~~~~~-----~~~~~~~~lvviDsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
+.+.. .+.+.. +.+..... ...+++ |++|+...||++.+.
T Consensus 433 ~~~~~~i~~~l~~~~l~~~i~~lp------~gldt~i~~~g~~LSg--GqrQRiaLARall~~~~illLDEpts~LD~~~ 504 (571)
T TIGR02203 433 QADRAEIERALAAAYAQDFVDKLP------LGLDTPIGENGVLLSG--GQRQRLAIARALLKDAPILILDEATSALDNES 504 (571)
T ss_pred CCCHHHHHHHHHHcChHHHHHhCc------CcccceecCCCCcCCH--HHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 22211 111111 11111111 123444 899999999988764
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
+.+....+ ..++|+|+++|..+ +...||.++.++.+++.
T Consensus 505 ~~~i~~~L~~~-~~~~tiIiitH~~~-------------------~~~~~D~ii~l~~g~i~ 546 (571)
T TIGR02203 505 ERLVQAALERL-MQGRTTLVIAHRLS-------------------TIEKADRIVVMDDGRIV 546 (571)
T ss_pred HHHHHHHHHHH-hCCCEEEEEehhhH-------------------HHHhCCEEEEEeCCEEE
Confidence 33333322 24799999999653 34568999999766543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-10 Score=132.13 Aligned_cols=151 Identities=11% Similarity=0.170 Sum_probs=102.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQAL------ 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l------ 125 (366)
+++|+.++|+|++|||||||++.+.+.+.+.+|. +++|+.+..+ ..+++++++++|++.+++. |+.+++
T Consensus 1259 I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~-I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~~~ 1336 (1495)
T PLN03232 1259 VSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGR-IMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFSEH 1336 (1495)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCce-EEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCCCC
Confidence 7899999999999999999999999999988886 7888765433 4678899999999887753 444333
Q ss_pred ------HHHHH-----HHhcCCceEEEEecccccCCC--CccCCccchhhHHHHHHHHHHH-------------------
Q 017792 126 ------SLVDT-----LIRSGSVDVVVVDSVAALVPK--GELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 126 ------~~~~~-----~~~~~~~~lvviDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
+.++. .+.... +.+...... ..+++ |++|+...||++.+.
T Consensus 1337 sdeei~~al~~a~l~~~I~~lp------~GLdt~v~e~G~~LSg--GQrQrlaLARALLr~~~ILILDEATSaLD~~Te~ 1408 (1495)
T PLN03232 1337 NDADLWEALERAHIKDVIDRNP------FGLDAEVSEGGENFSV--GQRQLLSLARALLRRSKILVLDEATASVDVRTDS 1408 (1495)
T ss_pred CHHHHHHHHHHcCCHHHHHhCc------CCCCceecCCCCCCCH--HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHH
Confidence 22221 111110 112222211 23444 899999999998775
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.+..+.. ..++|||+|+|..+. +. .||+++.|++|+++..|
T Consensus 1409 ~Iq~~L~~~-~~~~TvI~IAHRl~t------------------i~-~~DrIlVL~~G~ivE~G 1451 (1495)
T PLN03232 1409 LIQRTIREE-FKSCTMLVIAHRLNT------------------II-DCDKILVLSSGQVLEYD 1451 (1495)
T ss_pred HHHHHHHHH-cCCCEEEEEeCCHHH------------------HH-hCCEEEEEECCEEEEEC
Confidence 33333322 248999999997643 32 37999999887655443
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-10 Score=123.88 Aligned_cols=157 Identities=20% Similarity=0.269 Sum_probs=102.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCC------------C
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQP------------D 119 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~------------~ 119 (366)
+|+|+.++|+|++||||||+...+.+.+.|..|. +++|+++..+ +.++.++|++.|.+.++.. .
T Consensus 376 i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~-V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~da 454 (1228)
T KOG0055|consen 376 IPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGE-VLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDA 454 (1228)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCce-EEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcc
Confidence 7999999999999999999999999999998886 8999887654 4567789999998754432 1
Q ss_pred CHHHHHHHHHHHHhcCCceEEEEecccccCCC--CccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 120 CGEQALSLVDTLIRSGSVDVVVVDSVAALVPK--GELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 120 ~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
|.+++.+..+ +......-.-..+....+... .+++| |++||..+||++.+. +...
T Consensus 455 t~~~i~~a~k-~ana~~fi~~lp~g~~T~vge~g~qLSG--GQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~A 531 (1228)
T KOG0055|consen 455 TREEIEEAAK-AANAHDFILKLPDGYDTLVGERGVQLSG--GQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEA 531 (1228)
T ss_pred cHHHHHHHHH-HccHHHHHHhhHHhhcccccCCCCCCCh--HHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHH
Confidence 2223222221 110111111112233333322 33555 899999999998775 3333
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
...+ ..|.|-|+++|..+. +.. +|.++.+++++++..|
T Consensus 532 Ld~~-~~grTTivVaHRLSt------------------Irn-aD~I~v~~~G~IvE~G 569 (1228)
T KOG0055|consen 532 LDKA-SKGRTTIVVAHRLST------------------IRN-ADKIAVMEEGKIVEQG 569 (1228)
T ss_pred HHHh-hcCCeEEEEeeehhh------------------hhc-cCEEEEEECCEEEEec
Confidence 3332 247799999997765 333 7777788777766654
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-10 Score=106.80 Aligned_cols=146 Identities=16% Similarity=0.179 Sum_probs=84.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEE----------EEeCCCCCCH--HHHh---hcccccCcceecCCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCV----------FIDAEHALDP--SLAE---TIGVKTENLLLAQPD 119 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl----------~id~e~~~~~--~~~~---~ig~~~~~~~~~~~~ 119 (366)
+.+|++++|+||||||||||++.+++.+.+..|.+. ++++...... ...+ .+++.++.+.....
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~- 101 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK- 101 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCch-
Confidence 679999999999999999999999999998888754 2444332211 1111 24555555443321
Q ss_pred CHHH-HH---------HHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH----------------
Q 017792 120 CGEQ-AL---------SLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA---------------- 173 (366)
Q Consensus 120 ~~e~-~l---------~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------- 173 (366)
++.+ +. ..+..++..... +...... ...+++ |++|+...+|+++..
T Consensus 102 ~~~~~i~~~l~~~~~~~~~~~~l~~~gl-----~~~~~~~-~~~LS~--G~~qrv~laral~~~p~illlDEPts~LD~~ 173 (255)
T cd03236 102 AVKGKVGELLKKKDERGKLDELVDQLEL-----RHVLDRN-IDQLSG--GELQRVAIAAALARDADFYFFDEPSSYLDIK 173 (255)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHHcCC-----chhhcCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEECCCCCCCHH
Confidence 1111 11 111111211111 1111111 123333 777777777776643
Q ss_pred ----HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEE
Q 017792 174 ----LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIK 227 (366)
Q Consensus 174 ----L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~ 227 (366)
+..+.+.+++.+++||+++|.... +..+||.++.|+
T Consensus 174 ~~~~l~~~l~~l~~~~~tIIiiSHd~~~------------------~~~~ad~i~~l~ 213 (255)
T cd03236 174 QRLNAARLIRELAEDDNYVLVVEHDLAV------------------LDYLSDYIHCLY 213 (255)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEECCHHH------------------HHHhCCEEEEEC
Confidence 445555555568999999997754 455688887775
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.8e-11 Score=117.52 Aligned_cols=40 Identities=33% Similarity=0.463 Sum_probs=34.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
-+++|++++|+|+||||||||++.+++...+..|. +++++
T Consensus 46 sI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGe-I~I~G 85 (549)
T PRK13545 46 EVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGT-VDIKG 85 (549)
T ss_pred EEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceE-EEECC
Confidence 47899999999999999999999999998887776 45554
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=95.31 Aligned_cols=135 Identities=16% Similarity=0.147 Sum_probs=77.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC-CC---------HHHHhhcccccCcc-eecCCCCH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD---------PSLAETIGVKTENL-LLAQPDCG-- 121 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~-~~---------~~~~~~ig~~~~~~-~~~~~~~~-- 121 (366)
+++|++++|.||||||||||++.+.. ..|.+. +..... .. ....+.+++..... ......+.
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~-~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq 92 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKAR-LISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGE 92 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEE-ECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHH
Confidence 67999999999999999999987642 344433 332211 10 12334444321100 01112233
Q ss_pred HHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccc
Q 017792 122 EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTF 201 (366)
Q Consensus 122 e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~ 201 (366)
.+-+.++..++..+.++++++|....-... ...+.+.+.|+.+ .+.+.|||+++|..+.
T Consensus 93 ~qrl~laral~~~~~p~llLlDEPt~~LD~-------------~~~~~l~~~l~~~----~~~g~tvIivSH~~~~---- 151 (176)
T cd03238 93 LQRVKLASELFSEPPGTLFILDEPSTGLHQ-------------QDINQLLEVIKGL----IDLGNTVILIEHNLDV---- 151 (176)
T ss_pred HHHHHHHHHHhhCCCCCEEEEeCCcccCCH-------------HHHHHHHHHHHHH----HhCCCEEEEEeCCHHH----
Confidence 233445555555444899999998776520 1122333344433 3469999999997653
Q ss_pred cCCCCeeeccCCceeeeeceEEEEEEEec
Q 017792 202 GFGGPTEVTCGGNALKFYASVRLNIKRIG 230 (366)
Q Consensus 202 ~~~~~~~~~~gG~~l~~~ad~~i~l~~~~ 230 (366)
+. .||+++.|.++.
T Consensus 152 --------------~~-~~d~i~~l~~g~ 165 (176)
T cd03238 152 --------------LS-SADWIIDFGPGS 165 (176)
T ss_pred --------------HH-hCCEEEEECCCC
Confidence 32 478888886643
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.2e-11 Score=110.58 Aligned_cols=144 Identities=16% Similarity=0.196 Sum_probs=84.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV------ 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~------ 128 (366)
+++|++++|+|+||||||||++.+++.+.+..|.+ ++++ .++|.+|+..+++. ++.+.+...
T Consensus 60 i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I-~i~g----------~i~yv~q~~~l~~~-tv~enl~~~~~~~~~ 127 (282)
T cd03291 60 IEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI-KHSG----------RISFSSQFSWIMPG-TIKENIIFGVSYDEY 127 (282)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECC----------EEEEEeCccccccc-CHHHHhhcccccCHH
Confidence 78999999999999999999999999888877764 4443 36666666554432 444443221
Q ss_pred --HHHHhcCCceEEEEeccc----ccC--CCCccCCccchhhHHHHHHHHHHH--------------------HHH-HHH
Q 017792 129 --DTLIRSGSVDVVVVDSVA----ALV--PKGELDGEMGDAHMAMQARLMSQA--------------------LRK-LSH 179 (366)
Q Consensus 129 --~~~~~~~~~~lvviDsl~----~l~--~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~-L~~ 179 (366)
..........- .++.+. ... +...+++ |++++...||+++.. +.. +..
T Consensus 128 ~~~~~l~~~~l~~-~l~~~~~~~~~~~~~~~~~LSg--Gq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~ 204 (282)
T cd03291 128 RYKSVVKACQLEE-DITKFPEKDNTVLGEGGITLSG--GQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVC 204 (282)
T ss_pred HHHHHHHHhCCHH-HHHhccccccceecCCCCcCCH--HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 00011000000 000000 000 0123433 778888888777653 322 222
Q ss_pred HhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 180 SLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 180 ~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
.+. .+.|||+++|.... +. .||+++.|.++.+..
T Consensus 205 ~~~-~~~tIiiisH~~~~------------------~~-~~d~i~~l~~G~i~~ 238 (282)
T cd03291 205 KLM-ANKTRILVTSKMEH------------------LK-KADKILILHEGSSYF 238 (282)
T ss_pred Hhh-CCCEEEEEeCChHH------------------HH-hCCEEEEEECCEEEE
Confidence 332 47999999997653 22 478888888765433
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.7e-10 Score=111.17 Aligned_cols=154 Identities=23% Similarity=0.297 Sum_probs=103.6
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC--CCCHHHHhhcccccCcceecC-----------CC-
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH--ALDPSLAETIGVKTENLLLAQ-----------PD- 119 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~--~~~~~~~~~ig~~~~~~~~~~-----------~~- 119 (366)
-+.+|+-+.|+|++|||||||+..+++.+.++.|.+.+-+.+- ..++.+.+.+++..|+.+++. +.
T Consensus 360 ~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~A 439 (573)
T COG4987 360 TLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDA 439 (573)
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCC
Confidence 3779999999999999999999999999999988855444332 223468889999888776543 32
Q ss_pred CHHHHHHHHHH-----HHhcCCceEEEEecccccCCC--CccCCccchhhHHHHHHHHHHH-------------------
Q 017792 120 CGEQALSLVDT-----LIRSGSVDVVVVDSVAALVPK--GELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 120 ~~e~~l~~~~~-----~~~~~~~~lvviDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
+.|++.+.+.+ ++.... |.+...... ..++| |++++-..||.+.+.
T Consensus 440 sDEel~~aL~qvgL~~l~~~~p------~gl~t~lge~G~~LSG--GE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~ 511 (573)
T COG4987 440 SDEELWAALQQVGLEKLLESAP------DGLNTWLGEGGRRLSG--GERRRLALARALLHDAPLWLLDEPTEGLDPITER 511 (573)
T ss_pred CHHHHHHHHHHcCHHHHHHhCh------hhhhchhccCCCcCCc--hHHHHHHHHHHHHcCCCeEEecCCcccCChhhHH
Confidence 44555554433 222111 122222222 23444 888888888887664
Q ss_pred --HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 --LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 --L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
|..+...+ .+.|+|++||....+ ..+|+++.|+.++++.+|+
T Consensus 512 ~vL~ll~~~~--~~kTll~vTHrL~~l-------------------e~~drIivl~~Gkiie~G~ 555 (573)
T COG4987 512 QVLALLFEHA--EGKTLLMVTHRLRGL-------------------ERMDRIIVLDNGKIIEEGT 555 (573)
T ss_pred HHHHHHHHHh--cCCeEEEEecccccH-------------------hhcCEEEEEECCeeeecCC
Confidence 44444433 489999999976542 3479999999988777764
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-10 Score=119.86 Aligned_cols=159 Identities=16% Similarity=0.181 Sum_probs=105.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHH----HhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSL----AETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~----~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|+|+||||||||++.+++...+..|. ++++++.... ..+ .+.+++.+|+..+++..++.+.+..
T Consensus 31 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~-i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~ 109 (648)
T PRK10535 31 IYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT-YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEV 109 (648)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE-EEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHH
Confidence 6799999999999999999999999998888887 5667665332 222 3568999999887777777665543
Q ss_pred HHHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
........ -.+.+-++...... ...+++ |++|+...||+++.. +.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~-~~~LS~--Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~l 186 (648)
T PRK10535 110 PAVYAGLERKQRLLRAQELLQRLGLEDRVEYQ-PSQLSG--GQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAI 186 (648)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCChhhhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 21100000 00011111111111 133443 788888888887654 6666
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
...+++.+.|+|+++|..+. +. .||+++.|.++++...++
T Consensus 187 l~~l~~~g~tilivsH~~~~------------------~~-~~d~i~~l~~G~i~~~g~ 226 (648)
T PRK10535 187 LHQLRDRGHTVIIVTHDPQV------------------AA-QAERVIEIRDGEIVRNPP 226 (648)
T ss_pred HHHHHhcCCEEEEECCCHHH------------------HH-hCCEEEEEECCEEEeecC
Confidence 66666679999999997643 33 489999999888766654
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-10 Score=103.82 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=34.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
+++|++++|.||||||||||++.+++...+..|.+..++.
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~ 49 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRG 49 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecC
Confidence 6799999999999999999999999998888887643443
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.8e-10 Score=116.90 Aligned_cols=150 Identities=15% Similarity=0.142 Sum_probs=96.3
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHH--
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL-- 131 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~-- 131 (366)
=+++|++++|+|+||||||||++.+++...+..|.+ +++. ...+|+.+|++.++...|+.+.+......
T Consensus 27 ~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i-~~~~--------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~ 97 (552)
T TIGR03719 27 SFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEA-RPAP--------GIKVGYLPQEPQLDPTKTVRENVEEGVAEIK 97 (552)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecC--------CCEEEEEeccCCCCCCCcHHHHHHHhhHHHH
Confidence 378999999999999999999999999988877874 4432 13689999988777777887776542100
Q ss_pred ------------HhcCCce----------------EE-----------EEecc--cc-cCCCCccCCccchhhHHHHHHH
Q 017792 132 ------------IRSGSVD----------------VV-----------VVDSV--AA-LVPKGELDGEMGDAHMAMQARL 169 (366)
Q Consensus 132 ------------~~~~~~~----------------lv-----------viDsl--~~-l~~~~~l~~~~g~~~~~~~ar~ 169 (366)
....... .+ +++.+ .. -.+...+++ |++++...|++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSg--Gqkqrv~la~a 175 (552)
T TIGR03719 98 DALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSG--GERRRVALCRL 175 (552)
T ss_pred HHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCH--HHHHHHHHHHH
Confidence 0000000 00 00000 00 011234444 88888888888
Q ss_pred HHHH-----------------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 170 MSQA-----------------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 170 l~~~-----------------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
++.. ...+...+++.+.|||+++|.... +..+||.++.|+++.++
T Consensus 176 l~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~------------------~~~~~d~v~~l~~g~i~ 237 (552)
T TIGR03719 176 LLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYF------------------LDNVAGWILELDRGRGI 237 (552)
T ss_pred HhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHH------------------HHhhcCeEEEEECCEEE
Confidence 7653 334444455566799999998765 45567888888877643
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.7e-10 Score=129.00 Aligned_cols=158 Identities=15% Similarity=0.181 Sum_probs=103.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHH----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSL---- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~---- 127 (366)
+++|+.++|+|++|||||||+..+.+.+.+.+|. +++|+.+..+ ..+++++++.+|++.++.. |+.+++..
T Consensus 1309 I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~-I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~~~ 1386 (1522)
T TIGR00957 1309 IHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGE-IIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFSQY 1386 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCe-EEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCcccCC
Confidence 7899999999999999999999999999888886 7888876543 4678899999999887753 34333321
Q ss_pred ----HHHHHhcCCceEEE---EecccccCCC--CccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 128 ----VDTLIRSGSVDVVV---VDSVAALVPK--GELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 128 ----~~~~~~~~~~~lvv---iDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
+...++.-+..-.+ -+.+...... ..+++ |++|+...||++.+. +.+..
T Consensus 1387 sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSg--GQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l 1464 (1522)
T TIGR00957 1387 SDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSV--GQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTI 1464 (1522)
T ss_pred CHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCH--HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 11111110110000 0112222211 23443 899999999998775 33333
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.. ..++|||+|+|..+. +. .+|+++.|++|+++..|+
T Consensus 1465 ~~~-~~~~TvI~IAHRl~t------------------i~-~~DrIlVld~G~IvE~G~ 1502 (1522)
T TIGR00957 1465 RTQ-FEDCTVLTIAHRLNT------------------IM-DYTRVIVLDKGEVAEFGA 1502 (1522)
T ss_pred HHH-cCCCEEEEEecCHHH------------------HH-hCCEEEEEECCEEEEECC
Confidence 221 248999999996643 22 379999999877655543
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-10 Score=118.44 Aligned_cols=136 Identities=24% Similarity=0.303 Sum_probs=84.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CHHHHhhcccccCcceecCCCCHHHHHHH-----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKTENLLLAQPDCGEQALSL----- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~~~~~~ig~~~~~~~~~~~~~~e~~l~~----- 127 (366)
+++|+.++|+||+|||||||++.+++.+.+..|. +++++.+.. ...+++.+++++|++.+++. |+.+++..
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~-I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~~~ 435 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGE-VTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGRPDA 435 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccCCCC
Confidence 7899999999999999999999999999988887 677764322 45677889999998877643 33333221
Q ss_pred ----HHHHHhcCCceE---EEEecccccCCC--CccCCccchhhHHHHHHHHHHH-----------------HHHHHHHh
Q 017792 128 ----VDTLIRSGSVDV---VVVDSVAALVPK--GELDGEMGDAHMAMQARLMSQA-----------------LRKLSHSL 181 (366)
Q Consensus 128 ----~~~~~~~~~~~l---vviDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~l 181 (366)
+.+.++.-+.+- -.-|.+...... ..+++ |++|+...||++.+. =..+.+.+
T Consensus 436 ~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG--GQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l 513 (529)
T TIGR02868 436 TDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSG--GERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDL 513 (529)
T ss_pred CHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 111111101100 001122222212 23444 899999999988764 12222222
Q ss_pred h--hcCcEEEEEecC
Q 017792 182 S--LSQTILIFINQV 194 (366)
Q Consensus 182 ~--~~~~tVI~i~h~ 194 (366)
. ..++|+|+++|.
T Consensus 514 ~~~~~~~TvIiItHr 528 (529)
T TIGR02868 514 LAALSGKTVVVITHH 528 (529)
T ss_pred HHhcCCCEEEEEecC
Confidence 2 247899999994
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.6e-10 Score=114.54 Aligned_cols=151 Identities=15% Similarity=0.177 Sum_probs=91.6
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCCCCC---C-HHHHhhcccccCcceecC--CCCHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHAL---D-PSLAETIGVKTENLLLAQ--PDCGEQALS 126 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e~~~---~-~~~~~~ig~~~~~~~~~~--~~~~e~~l~ 126 (366)
-+++|++++|+||||||||||++.+++...+ ..|. +++++.... . ..+.+.+++.+|+..+.. ..++++++.
T Consensus 282 ~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~ 360 (490)
T PRK10938 282 QVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSND-LTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVIL 360 (490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCe-EEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHH
Confidence 3779999999999999999999999996543 3676 556654321 1 234567899888754322 234555432
Q ss_pred HH-------------------HHHHhcCCceEEEEec-ccccCCCCccCCccchhhHHHHHHHHHHH-------------
Q 017792 127 LV-------------------DTLIRSGSVDVVVVDS-VAALVPKGELDGEMGDAHMAMQARLMSQA------------- 173 (366)
Q Consensus 127 ~~-------------------~~~~~~~~~~lvviDs-l~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------- 173 (366)
.. ..++. .+-++. ..... ...+++ |++|+...||+++..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~~-~~~LSg--Gq~qrv~la~al~~~p~lllLDEPt~gL 432 (490)
T PRK10938 361 SGFFDSIGIYQAVSDRQQKLAQQWLD-----ILGIDKRTADAP-FHSLSW--GQQRLALIVRALVKHPTLLILDEPLQGL 432 (490)
T ss_pred hccccccccccCCCHHHHHHHHHHHH-----HcCCchhhccCc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCccccC
Confidence 11 11111 111111 11111 234444 788888888887654
Q ss_pred -------HHHHHHHhhhcC-cEEEEEecCCcccccccCCCCeeeccCCceeee-eceEEEEEEEece
Q 017792 174 -------LRKLSHSLSLSQ-TILIFINQVRAKLSTFGFGGPTEVTCGGNALKF-YASVRLNIKRIGL 231 (366)
Q Consensus 174 -------L~~L~~~l~~~~-~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~-~ad~~i~l~~~~~ 231 (366)
+..+...+.+.+ +|||+++|..+. +.. +||+++.|+++++
T Consensus 433 D~~~~~~l~~~L~~l~~~~~~tviivsHd~~~------------------~~~~~~d~v~~l~~G~i 481 (490)
T PRK10938 433 DPLNRQLVRRFVDVLISEGETQLLFVSHHAED------------------APACITHRLEFVPDGDI 481 (490)
T ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecchhh------------------hhhhhheeEEEecCCce
Confidence 555555554444 579999998764 333 5788888877653
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-10 Score=120.82 Aligned_cols=145 Identities=17% Similarity=0.226 Sum_probs=89.4
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcc-eecCCCCHHHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENL-LLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~-~~~~~~~~e~~l~~~~~~~ 132 (366)
-+.+|++++|+||||||||||++.+++.+.+..|.+ +++. . -.+||.+|+. .+....++.+.+.......
T Consensus 341 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i-~~~~-~-------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~ 411 (635)
T PRK11147 341 QVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI-HCGT-K-------LEVAYFDQHRAELDPEKTVMDNLAEGKQEV 411 (635)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EECC-C-------cEEEEEeCcccccCCCCCHHHHHHhhcccc
Confidence 378999999999999999999999999888878875 4432 1 1578877764 3445557766654321100
Q ss_pred hcCC--------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-----------------HHHHHHHhhhcCcE
Q 017792 133 RSGS--------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-----------------LRKLSHSLSLSQTI 187 (366)
Q Consensus 133 ~~~~--------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~l~~~~~t 187 (366)
.... ...+-+..-..-.+...+++ |++++...|+++... ...|...+++++.|
T Consensus 412 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg--GekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~t 489 (635)
T PRK11147 412 MVNGRPRHVLGYLQDFLFHPKRAMTPVKALSG--GERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGT 489 (635)
T ss_pred cccchHHHHHHHHHhcCCCHHHHhChhhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCe
Confidence 0000 00000000000011234444 777777777776653 44455555666789
Q ss_pred EEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEE
Q 017792 188 LIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIK 227 (366)
Q Consensus 188 VI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~ 227 (366)
||+++|.+.. +..+||+++.+.
T Consensus 490 vi~vSHd~~~------------------~~~~~d~i~~l~ 511 (635)
T PRK11147 490 VLLVSHDRQF------------------VDNTVTECWIFE 511 (635)
T ss_pred EEEEECCHHH------------------HHHhcCEEEEEe
Confidence 9999998765 455678888876
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.3e-10 Score=98.91 Aligned_cols=162 Identities=18% Similarity=0.225 Sum_probs=92.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCeEEEEeCCCCCC---HHHH-hhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEHALD---PSLA-ETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~--~~gg~vl~id~e~~~~---~~~~-~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++.+|.||||||||||+..+++.-. ...|. +.+++++..+ .+++ .-+.+.+|++.=++..+..+++...
T Consensus 27 v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~-I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a 105 (251)
T COG0396 27 VKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGE-ILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAA 105 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecce-EEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHH
Confidence 67999999999999999999999988542 34666 6778887655 2333 3355667776655555555554433
Q ss_pred HHHHhcCC-------------ceEEEEec-ccccCCCCccCCccchhhHHHHHHHHHHH--------------------H
Q 017792 129 DTLIRSGS-------------VDVVVVDS-VAALVPKGELDGEMGDAHMAMQARLMSQA--------------------L 174 (366)
Q Consensus 129 ~~~~~~~~-------------~~lvviDs-l~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L 174 (366)
....+..+ ...+-+|. ...-.-...+++ |++.+....+.+... +
T Consensus 106 ~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSG--GEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V 183 (251)
T COG0396 106 MNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSG--GEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIV 183 (251)
T ss_pred HHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCc--chHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHH
Confidence 22211110 11111222 000000223333 555444443332221 4
Q ss_pred HHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeee-ceEEEEEEEeceeecCcc
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFY-ASVRLNIKRIGLVKKGEE 237 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~-ad~~i~l~~~~~~~~~~~ 237 (366)
-+....++..+.++++|||..+- +.|+ .|.+-.|.+++++++|++
T Consensus 184 ~~~i~~lr~~~~~~liITHy~rl------------------l~~i~pD~vhvl~~GrIv~sG~~ 229 (251)
T COG0396 184 AEGINALREEGRGVLIITHYQRL------------------LDYIKPDKVHVLYDGRIVKSGDP 229 (251)
T ss_pred HHHHHHHhcCCCeEEEEecHHHH------------------HhhcCCCEEEEEECCEEEecCCH
Confidence 44455566789999999997653 2222 377777777777777654
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=7e-10 Score=124.75 Aligned_cols=72 Identities=19% Similarity=0.309 Sum_probs=56.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE-eCCCC--CC-HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI-DAEHA--LD-PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~i-d~e~~--~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
-+++|++++|+||||||||||++.+++.+.+..|. +++ ++.+. .+ ..+++.+|+++|++.++. .|+.+++..
T Consensus 407 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~-I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~ 482 (1466)
T PTZ00265 407 TLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGD-IIINDSHNLKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKY 482 (1466)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCe-EEEeCCcchhhCCHHHHHHhccEecccccchh-ccHHHHHHh
Confidence 37899999999999999999999999999998887 556 43322 22 345678999999988775 477777654
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-09 Score=92.93 Aligned_cols=156 Identities=21% Similarity=0.200 Sum_probs=93.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceec--CCCCHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA--QPDCGEQALS--- 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~--~~~~~e~~l~--- 126 (366)
+.+|+.++|.|.||||||||++.+++.+.+.+|++ .++.+.... ..+++++.+.+|++... +...+-++++
T Consensus 36 L~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~i-l~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL 114 (267)
T COG4167 36 LREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEI-LINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPL 114 (267)
T ss_pred ecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceE-EECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchh
Confidence 45889999999999999999999999999999985 455544322 35677888888765321 1112222221
Q ss_pred -------------HHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 127 -------------LVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 127 -------------~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
.+..-++. +. +.-|.. .+.| ..+ ..|++|+...||++.-.
T Consensus 115 ~l~T~~~~~~R~~~i~~TL~~--VG-L~Pdha-n~~~-~~l--a~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQ 187 (267)
T COG4167 115 RLNTDLEPEQRRKQIFETLRM--VG-LLPDHA-NYYP-HML--APGQKQRVALARALILRPKIIIADEALASLDMSMRSQ 187 (267)
T ss_pred hhcccCChHHHHHHHHHHHHH--hc-cCcccc-ccch-hhc--CchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHH
Confidence 11110000 00 001111 1111 111 12566666666664321
Q ss_pred HHHHHHHh-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 L~~L~~~l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.+|.-.| .+.|+..|.++|..-. ++|++|.+|.|+.++.+..|.
T Consensus 188 l~NL~LeLQek~GiSyiYV~QhlG~------------------iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 188 LINLMLELQEKQGISYIYVTQHIGM------------------IKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHhCceEEEEechhhH------------------hhhhcccEEEEecCceeecCC
Confidence 33443333 4579999999985421 899999999999887776654
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.5e-10 Score=125.23 Aligned_cols=164 Identities=14% Similarity=0.092 Sum_probs=106.2
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--cCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQR--QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~--~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
|-+++|++++|.||||||||||++.+++.... ..|. +++++.......+.+.+||.+|+..+.+..|+.+.+.+...
T Consensus 901 ~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~-I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~ 979 (1470)
T PLN03140 901 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGD-IRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAF 979 (1470)
T ss_pred EEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccce-EEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHH
Confidence 46889999999999999999999999987532 2354 56776544334455678999998877778899888776432
Q ss_pred HHhcCC-------------ceEEEEecccccCC----CCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 131 LIRSGS-------------VDVVVVDSVAALVP----KGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 131 ~~~~~~-------------~~lvviDsl~~l~~----~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
+..... .+.+-++....... ...+++ |++++...+++++..
T Consensus 980 lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSg--GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~ 1057 (1470)
T PLN03140 980 LRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLST--EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1057 (1470)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCH--HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Confidence 210000 00111111111110 124554 888888888887654
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE-eceeecCc
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR-IGLVKKGE 236 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~-~~~~~~~~ 236 (366)
+.++.+.+.+.|.|||+++|..+. .+...+|.++.|.+ ++.+..|.
T Consensus 1058 v~~~L~~l~~~g~tVI~t~Hq~~~-----------------~i~~~~D~vllL~~gG~~v~~G~ 1104 (1470)
T PLN03140 1058 VMRTVRNTVDTGRTVVCTIHQPSI-----------------DIFEAFDELLLMKRGGQVIYSGP 1104 (1470)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCH-----------------HHHHhCCEEEEEcCCCEEEEECC
Confidence 555555566679999999996542 03456789999986 55555543
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-10 Score=118.35 Aligned_cols=145 Identities=22% Similarity=0.243 Sum_probs=90.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcce-ecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLL-LAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~~~~~~ 133 (366)
+.+|++++|.||||||||||++.+++...+..|.+ +++.. ..+||.+|+.. +....++.+.+........
T Consensus 345 i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i-~~~~~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~ 415 (552)
T TIGR03719 345 LPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI-KIGET--------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ 415 (552)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE-EECCc--------eEEEEEeCCccccCCCCcHHHHHHhhccccc
Confidence 78999999999999999999999999888877875 44431 15888888753 5555677776654211000
Q ss_pred cC--C------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-----------------HHHHHHHhhhcCcEE
Q 017792 134 SG--S------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-----------------LRKLSHSLSLSQTIL 188 (366)
Q Consensus 134 ~~--~------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~l~~~~~tV 188 (366)
.. . ...+-++....-.+...+++ |++++...||+++.. ...+...+++.+.+|
T Consensus 416 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg--Ge~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~v 493 (552)
T TIGR03719 416 LGKREVPSRAYVGRFNFKGSDQQKKVGQLSG--GERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCA 493 (552)
T ss_pred cCcchHHHHHHHHhCCCChhHhcCchhhCCH--HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 00 0 00111110000011234444 888888888887654 344444445545689
Q ss_pred EEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 189 IFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 189 I~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
|+++|.... +..+||+++.|.+
T Consensus 494 iivsHd~~~------------------~~~~~d~i~~l~~ 515 (552)
T TIGR03719 494 VVISHDRWF------------------LDRIATHILAFEG 515 (552)
T ss_pred EEEeCCHHH------------------HHHhCCEEEEEEC
Confidence 999997764 5567888888764
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.6e-10 Score=116.66 Aligned_cols=138 Identities=19% Similarity=0.292 Sum_probs=88.5
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHH--
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV-- 128 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~-- 128 (366)
=+++|+.++|+|++|||||||++.+++.+.+..|. +++++.+..+ ..+++.+++.+|++.+++ .|+.+++...
T Consensus 344 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~-I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~~ 421 (529)
T TIGR02857 344 TVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGS-IAVNGVPLADADADSWRDQIAWVPQHPFLFA-GTIAENIRLARP 421 (529)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEehhhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccCC
Confidence 37899999999999999999999999999988887 5777664322 467888999999987764 3554443321
Q ss_pred -------HHHHhcCCceEEEEec----ccccCC--CCccCCccchhhHHHHHHHHHHH--------------------HH
Q 017792 129 -------DTLIRSGSVDVVVVDS----VAALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LR 175 (366)
Q Consensus 129 -------~~~~~~~~~~lvviDs----l~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~ 175 (366)
...++.....- .+++ +..... ...+++ |++|+...||++.+. +.
T Consensus 422 ~~~~~~i~~a~~~~~l~~-~i~~lp~Gldt~v~e~g~~LSg--Gq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~ 498 (529)
T TIGR02857 422 DASDAEIRRALERAGLDE-FVAALPQGLDTLIGEGGAGLSG--GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVT 498 (529)
T ss_pred CCCHHHHHHHHHHcCcHH-HHHhCcccccchhccccccCCH--HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH
Confidence 11111111110 0111 111111 233444 899999999988764 32
Q ss_pred HHHHHhhhcCcEEEEEecCCcc
Q 017792 176 KLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 176 ~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
+....+. .++|+|+++|..+.
T Consensus 499 ~~l~~~~-~~~t~i~itH~~~~ 519 (529)
T TIGR02857 499 EALRALA-QGRTVLLVTHRLAL 519 (529)
T ss_pred HHHHHhc-CCCEEEEEecCHHH
Confidence 3332222 58999999997643
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.8e-10 Score=106.81 Aligned_cols=117 Identities=21% Similarity=0.314 Sum_probs=78.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCccee-----------cCCC-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLL-----------AQPD- 119 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~-----------~~~~- 119 (366)
+++|+.++|+||+|+||||+++.+...+....| ++-||+.+... ..+++++|++||+-.+ ..+.
T Consensus 561 v~pGktvAlVG~SGaGKSTimRlLfRffdv~sG-sI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~A 639 (790)
T KOG0056|consen 561 VQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSG-SITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSA 639 (790)
T ss_pred ecCCcEEEEECCCCCchhHHHHHHHHHhhccCc-eEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCC
Confidence 689999999999999999999999999888777 58889877654 4678899999985433 3333
Q ss_pred CHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH
Q 017792 120 CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA 173 (366)
Q Consensus 120 ~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~ 173 (366)
+-|++.+.+.. ..-++.-+-+-|..........+.-+.|++|+...||.+.+.
T Consensus 640 sneevyaAAkA-A~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~ 692 (790)
T KOG0056|consen 640 SNEEVYAAAKA-AQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKA 692 (790)
T ss_pred ChHHHHHHHHH-hhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcC
Confidence 33444433322 111112222334444444444444445888888888887664
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-09 Score=95.87 Aligned_cols=138 Identities=19% Similarity=0.238 Sum_probs=91.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC--CCC-CCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA--EHA-LDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~--e~~-~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
|.++.++||+|+||||+++.++..+...+..|+++.. +.. ....+..++|+......+ ....+++..+.. ..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~---~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPV---SSDTDIFELIEE--EG 76 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEe---CChHHHHHHHHh--hC
Confidence 7899999999999999999999999888888888843 221 123355666754443222 345566666554 45
Q ss_pred CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCc
Q 017792 135 GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGN 214 (366)
Q Consensus 135 ~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~ 214 (366)
.+.++|+||+++.+.. ..+..+...++..|++||++.+..+-.+. .|..+ .
T Consensus 77 ~~~dvviIDEaq~l~~---------------------~~v~~l~~~l~~~g~~vi~tgl~~~~~~~-~f~~~-------~ 127 (190)
T PRK04296 77 EKIDCVLIDEAQFLDK---------------------EQVVQLAEVLDDLGIPVICYGLDTDFRGE-PFEGS-------P 127 (190)
T ss_pred CCCCEEEEEccccCCH---------------------HHHHHHHHHHHHcCCeEEEEecCcccccC-cCchH-------H
Confidence 6789999999965421 11234555556789999999887654221 01111 2
Q ss_pred eeeeeceEEEEEEEe
Q 017792 215 ALKFYASVRLNIKRI 229 (366)
Q Consensus 215 ~l~~~ad~~i~l~~~ 229 (366)
.+..+||.++.|+..
T Consensus 128 ~L~~~aD~V~~l~~v 142 (190)
T PRK04296 128 YLLALADKVTELKAI 142 (190)
T ss_pred HHHHhcCeEEEeeEE
Confidence 367789999888754
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.6e-10 Score=126.36 Aligned_cols=156 Identities=16% Similarity=0.162 Sum_probs=101.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHH----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSL---- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~---- 127 (366)
|++|+.++|+|++|||||||++.+.+.+.+.+|. +++|+.+..+ ..+++.+++++|++.++.. |+.+++..
T Consensus 1333 I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~-I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~~~ 1410 (1560)
T PTZ00243 1333 IAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGE-IRVNGREIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFLEA 1410 (1560)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEEcccCCHHHHHhcceEECCCCccccc-cHHHHhCcccCC
Confidence 6799999999999999999999999999988886 6888776543 4678899999999887753 44444321
Q ss_pred ----HHHHHhcCCceEEEEe----cccccCCC--CccCCccchhhHHHHHHHHHHH---------------------HHH
Q 017792 128 ----VDTLIRSGSVDVVVVD----SVAALVPK--GELDGEMGDAHMAMQARLMSQA---------------------LRK 176 (366)
Q Consensus 128 ----~~~~~~~~~~~lvviD----sl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~---------------------L~~ 176 (366)
+...++.-+..- .|. .+...... ..+++ |++|+...||++.+. +.+
T Consensus 1411 sdeeI~~Al~~a~l~~-~I~~lp~Gldt~vge~G~nLSg--GQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~ 1487 (1560)
T PTZ00243 1411 SSAEVWAALELVGLRE-RVASESEGIDSRVLEGGSNYSV--GQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQA 1487 (1560)
T ss_pred CHHHHHHHHHHCCChH-HHhhCcccccccccCCcCcCCH--HHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHH
Confidence 111111111110 011 11222212 23444 899999999998851 333
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
..... ..++|||+|+|..+. +. .||+++.|+++.++..|
T Consensus 1488 ~L~~~-~~~~TvI~IAHRl~t------------------i~-~~DrIlVLd~G~VvE~G 1526 (1560)
T PTZ00243 1488 TVMSA-FSAYTVITIAHRLHT------------------VA-QYDKIIVMDHGAVAEMG 1526 (1560)
T ss_pred HHHHH-CCCCEEEEEeccHHH------------------HH-hCCEEEEEECCEEEEEC
Confidence 23221 248999999996643 22 37999999887655443
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-10 Score=117.39 Aligned_cols=145 Identities=23% Similarity=0.256 Sum_probs=90.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcc-eecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENL-LLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~-~~~~~~~~e~~l~~~~~~~~ 133 (366)
+.+|++++|+|+||||||||++.+++...+..|.+ +++.. ..+||.+|+. .+....++.+.+........
T Consensus 347 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i-~~~~~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~ 417 (556)
T PRK11819 347 LPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI-KIGET--------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK 417 (556)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCc--------eEEEEEeCchhhcCCCCCHHHHHHhhccccc
Confidence 78999999999999999999999999888888875 44421 1589999886 45566677777654221100
Q ss_pred cC--Cce-EEEEeccc---cc--CCCCccCCccchhhHHHHHHHHHHH-----------------HHHHHHHhhhcCcEE
Q 017792 134 SG--SVD-VVVVDSVA---AL--VPKGELDGEMGDAHMAMQARLMSQA-----------------LRKLSHSLSLSQTIL 188 (366)
Q Consensus 134 ~~--~~~-lvviDsl~---~l--~~~~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~l~~~~~tV 188 (366)
.. ... ...++.+. .. .+...+++ |++++...+|+++.. ...+...+.+...+|
T Consensus 418 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tv 495 (556)
T PRK11819 418 VGNREIPSRAYVGRFNFKGGDQQKKVGVLSG--GERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCA 495 (556)
T ss_pred ccccHHHHHHHHHhCCCChhHhcCchhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeE
Confidence 00 000 00011110 00 01234444 788888888877653 333344444444589
Q ss_pred EEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 189 IFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 189 I~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
|+++|.... +..+||+++.|.+
T Consensus 496 i~vtHd~~~------------------~~~~~d~i~~l~~ 517 (556)
T PRK11819 496 VVISHDRWF------------------LDRIATHILAFEG 517 (556)
T ss_pred EEEECCHHH------------------HHHhCCEEEEEEC
Confidence 999997764 5557888887764
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.2e-10 Score=119.46 Aligned_cols=145 Identities=16% Similarity=0.147 Sum_probs=87.6
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcce--ecCCCCHHHHHHH----
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLL--LAQPDCGEQALSL---- 127 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~--~~~~~~~e~~l~~---- 127 (366)
-+.+|++++|+||||||||||++.+++...+..|.+ +++.. ..+||.+|+.. +....++.+.+..
T Consensus 334 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i-~~~~~--------~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~ 404 (638)
T PRK10636 334 NLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI-GLAKG--------IKLGYFAQHQLEFLRADESPLQHLARLAPQ 404 (638)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EECCC--------EEEEEecCcchhhCCccchHHHHHHHhCch
Confidence 478999999999999999999999999988888874 44321 25677776531 2222233222211
Q ss_pred -----HHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-----------------HHHHHHHhhhcC
Q 017792 128 -----VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-----------------LRKLSHSLSLSQ 185 (366)
Q Consensus 128 -----~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~l~~~~ 185 (366)
+..++.... +..-..-.+...+++ |++++...|++++.. ...+...+++++
T Consensus 405 ~~~~~~~~~L~~~~-----l~~~~~~~~~~~LSg--GekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~ 477 (638)
T PRK10636 405 ELEQKLRDYLGGFG-----FQGDKVTEETRRFSG--GEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFE 477 (638)
T ss_pred hhHHHHHHHHHHcC-----CChhHhcCchhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 111111111 110000011234444 777777777776653 444455555556
Q ss_pred cEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 186 TILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 186 ~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
.|||+++|.+.. +..+||+++.|.++.+.
T Consensus 478 gtvi~vSHd~~~------------------~~~~~d~i~~l~~G~i~ 506 (638)
T PRK10636 478 GALVVVSHDRHL------------------LRSTTDDLYLVHDGKVE 506 (638)
T ss_pred CeEEEEeCCHHH------------------HHHhCCEEEEEECCEEE
Confidence 799999998765 55678888888876543
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.9e-10 Score=97.80 Aligned_cols=138 Identities=17% Similarity=0.167 Sum_probs=89.4
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+|.+|+++++.||+|||||||++.+++...+..|. +-++......+ -..-|+++||..+.+..++-++..+-.++..
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~-i~l~~r~i~gP--gaergvVFQ~~~LlPWl~~~dNvafgL~l~G 103 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGS-IQLNGRRIEGP--GAERGVVFQNEALLPWLNVIDNVAFGLQLRG 103 (259)
T ss_pred eecCCCEEEEEcCCCccHHHHHHHHhcCcCcccce-EEECCEeccCC--CccceeEeccCccchhhHHHHHHHHHHHhcC
Confidence 58899999999999999999988888888887775 55554422211 1234889999888888777777655332210
Q ss_pred c----------CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH-HHHHhh
Q 017792 134 S----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK-LSHSLS 182 (366)
Q Consensus 134 ~----------~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~-L~~~l~ 182 (366)
- ....+|-+.....-+ --++++ |.+|+...||+++.. +.. |...++
T Consensus 104 i~k~~R~~~a~q~l~~VgL~~~~~~~-i~qLSG--GmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~ 180 (259)
T COG4525 104 IEKAQRREIAHQMLALVGLEGAEHKY-IWQLSG--GMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQ 180 (259)
T ss_pred CCHHHHHHHHHHHHHHhCcccccccc-eEeecc--hHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHH
Confidence 0 001111122222111 234555 888898999987643 222 344456
Q ss_pred hcCcEEEEEecCCcc
Q 017792 183 LSQTILIFINQVRAK 197 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~ 197 (366)
..|..+++|+|..++
T Consensus 181 ~tgk~~lliTH~ieE 195 (259)
T COG4525 181 ETGKQVLLITHDIEE 195 (259)
T ss_pred HhCCeEEEEeccHHH
Confidence 789999999998765
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.7e-10 Score=125.47 Aligned_cols=154 Identities=18% Similarity=0.177 Sum_probs=98.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
|++|+.++|+|++|||||||++.+++.+. .+|. +++|+.+..+ ..+++++++.+|++.++.. |+.+++...
T Consensus 1242 I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~-I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~~~ 1318 (1490)
T TIGR01271 1242 VEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGE-IQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYEQW 1318 (1490)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcE-EEECCEEcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCcccCC
Confidence 78999999999999999999999999986 5665 7888876543 4678899999999988764 454444211
Q ss_pred -----HHHHhcCCceEE---EEecccccCCC--CccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 -----DTLIRSGSVDVV---VVDSVAALVPK--GELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 -----~~~~~~~~~~lv---viDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
...++.-...-. .-+.+...... ..+++ |++|+...||++.+. +.+..
T Consensus 1319 tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSg--GQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L 1396 (1490)
T TIGR01271 1319 SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSN--GHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTL 1396 (1490)
T ss_pred CHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCH--HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 111111011000 00112222211 23443 899999999988764 33333
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
... ..++|||+|+|..+. +. .+|+++.|+++.++.
T Consensus 1397 ~~~-~~~~TvI~IaHRl~t------------------i~-~~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1397 KQS-FSNCTVILSEHRVEA------------------LL-ECQQFLVIEGSSVKQ 1431 (1490)
T ss_pred HHH-cCCCEEEEEecCHHH------------------HH-hCCEEEEEECCEEEE
Confidence 221 248999999996543 33 379999998775443
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.2e-10 Score=124.21 Aligned_cols=150 Identities=15% Similarity=0.198 Sum_probs=96.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--------------------------------------------------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-------------------------------------------------- 84 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-------------------------------------------------- 84 (366)
+++|+.++|+|++|||||||+..+++.+.+
T Consensus 1191 i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1270 (1466)
T PTZ00265 1191 CDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDS 1270 (1466)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999999999999999999999987
Q ss_pred ----cCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHH---------HHHHhcCCceEEEE----ec
Q 017792 85 ----QGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV---------DTLIRSGSVDVVVV----DS 144 (366)
Q Consensus 85 ----~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~---------~~~~~~~~~~lvvi----Ds 144 (366)
..|. +++|+.+..+ ..+++.+++++|++.++. .|+.+++.+. ....+.-...- +| +.
T Consensus 1271 ~~~~~~G~-I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~~at~eeI~~A~k~A~l~~-fI~~LP~G 1347 (1466)
T PTZ00265 1271 TVFKNSGK-ILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKEDATREDVKRACKFAAIDE-FIESLPNK 1347 (1466)
T ss_pred ccCCCCCe-EEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCCCCCHHHHHHHHHHcCCHH-HHHhCccc
Confidence 3454 7788765433 467888999999987763 2333332221 11111101100 01 11
Q ss_pred ccccCCC--CccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-hcCcEEEEEecCCcccccc
Q 017792 145 VAALVPK--GELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS-LSQTILIFINQVRAKLSTF 201 (366)
Q Consensus 145 l~~l~~~--~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~-~~~~tVI~i~h~~~~~~~~ 201 (366)
+...... ..+++ |++|+..+||++.+. +.+....+. ..+.|+|+|+|..+.
T Consensus 1348 ydT~VGe~G~~LSG--GQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlst---- 1421 (1466)
T PTZ00265 1348 YDTNVGPYGKSLSG--GQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIAS---- 1421 (1466)
T ss_pred cCCccCCCCCcCCH--HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHH----
Confidence 2222221 33454 899999999998765 333333332 258999999997643
Q ss_pred cCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 202 GFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 202 ~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
+. .||.++.|.+
T Consensus 1422 --------------i~-~aD~Ivvl~~ 1433 (1466)
T PTZ00265 1422 --------------IK-RSDKIVVFNN 1433 (1466)
T ss_pred --------------HH-hCCEEEEEeC
Confidence 22 3789988887
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.6e-10 Score=116.52 Aligned_cols=136 Identities=19% Similarity=0.190 Sum_probs=77.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEE----------EEeCCCCCCH--HHH---hhcccccCcceecCC-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCV----------FIDAEHALDP--SLA---ETIGVKTENLLLAQP- 118 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl----------~id~e~~~~~--~~~---~~ig~~~~~~~~~~~- 118 (366)
+++|++++|+||||+|||||++.+++.+.+..|.+. ++++.+.... .+. ..+++.+|.+...+.
T Consensus 96 i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~ 175 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKV 175 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhh
Confidence 568999999999999999999999999888878753 1333322111 111 123444444332221
Q ss_pred --CCHHHHHHHH------HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 119 --DCGEQALSLV------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 119 --~~~e~~l~~~------~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
.++.+++... ..++.... ++....-. -..+++ |++|+...|++++..
T Consensus 176 ~~~tv~e~l~~~~~~~~~~~~l~~l~-----l~~~~~~~-~~~LSg--Ge~qrv~ia~al~~~p~lllLDEPts~LD~~~ 247 (590)
T PRK13409 176 FKGKVRELLKKVDERGKLDEVVERLG-----LENILDRD-ISELSG--GELQRVAIAAALLRDADFYFFDEPTSYLDIRQ 247 (590)
T ss_pred hcchHHHHHHhhhHHHHHHHHHHHcC-----CchhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 2555544321 11111111 11111111 233443 677777777666543
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
+.++.+.+.+ +.+||+++|..+.+.
T Consensus 248 ~~~l~~~i~~l~~-g~tvIivsHd~~~l~ 275 (590)
T PRK13409 248 RLNVARLIRELAE-GKYVLVVEHDLAVLD 275 (590)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCHHHHH
Confidence 5555555566 999999999887643
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=9e-10 Score=91.72 Aligned_cols=140 Identities=19% Similarity=0.247 Sum_probs=83.6
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~---gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
-|.+|+|+.|.||+|||||||+.-+++.+... .|+ +|++...... +...+++|+.+|+..+++..++-+++.+..
T Consensus 24 Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~-~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAl 102 (213)
T COG4136 24 TIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE-LWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFAL 102 (213)
T ss_pred EecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeE-EEECCeeccccchhhhheeeeecccccccccccccceEEec
Confidence 36799999999999999999988888877654 344 6776554322 455678999999888777666554432210
Q ss_pred H---------HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH-HH
Q 017792 130 T---------LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL-SH 179 (366)
Q Consensus 130 ~---------~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L-~~ 179 (366)
. .........+-+|....-.| ..+++ |++.+....|++... +|.+ ..
T Consensus 103 p~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-~tlSG--GQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs 179 (213)
T COG4136 103 PATLKGNARRNAANAALERSGLDGAFHQDP-ATLSG--GQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFS 179 (213)
T ss_pred CcccccHHHHhhHHHHHHHhccchhhhcCh-hhcCc--chHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHH
Confidence 0 00000111222333333332 33443 454444444444332 3332 23
Q ss_pred HhhhcCcEEEEEecCCcc
Q 017792 180 SLSLSQTILIFINQVRAK 197 (366)
Q Consensus 180 ~l~~~~~tVI~i~h~~~~ 197 (366)
.++..|++.|.++|...+
T Consensus 180 ~~r~agiPtv~VTHD~~D 197 (213)
T COG4136 180 EVRAAGIPTVQVTHDLQD 197 (213)
T ss_pred HHHhcCCCeEEEeccccc
Confidence 456789999999998765
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.7e-10 Score=124.12 Aligned_cols=163 Identities=18% Similarity=0.188 Sum_probs=104.6
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh---hcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQ---RQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~---~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
+-+++|++++|.||||||||||++.+++... +..|. +++++... ...+.+.+|+.+|+..+....|+.+.+.+..
T Consensus 784 ~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~-I~i~G~~~-~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a 861 (1394)
T TIGR00956 784 GWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGD-RLVNGRPL-DSSFQRSIGYVQQQDLHLPTSTVRESLRFSA 861 (1394)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeE-EEECCEEC-ChhhhcceeeecccccCCCCCCHHHHHHHHH
Confidence 4689999999999999999999999998775 34465 67777654 2345677999999876677788888877643
Q ss_pred HHHhcCC-------------ceEEEEeccc-ccCC--CCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 130 TLIRSGS-------------VDVVVVDSVA-ALVP--KGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 130 ~~~~~~~-------------~~lvviDsl~-~l~~--~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
.+..... .+.+-++... .... ...+++ |++++...+++++..
T Consensus 862 ~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSg--GqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~ 939 (1394)
T TIGR00956 862 YLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNV--EQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAW 939 (1394)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCH--HHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHH
Confidence 2210000 0000011111 1110 013444 788888888877532
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEe-ceeecCc
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI-GLVKKGE 236 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~-~~~~~~~ 236 (366)
+.++.+.+++.|+|||+++|..+.. +...+|+++.|.++ +.+..|.
T Consensus 940 ~i~~~L~~la~~g~tvI~t~H~~~~~-----------------~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 940 SICKLMRKLADHGQAILCTIHQPSAI-----------------LFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCHH-----------------HHHhcCEEEEEcCCCEEEEECC
Confidence 4555555556799999999965420 23457899999876 5555443
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.4e-10 Score=128.18 Aligned_cols=164 Identities=10% Similarity=0.010 Sum_probs=106.9
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh----hcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQ----RQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALS 126 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~----~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~ 126 (366)
|-+.+|++++|.||||||||||++.+++... +..|. +++++....+ ..+.+.+++.+|+..+....|+.+.+.
T Consensus 82 ~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~-I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~ 160 (1394)
T TIGR00956 82 GLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGV-ITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLD 160 (1394)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeE-EEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHH
Confidence 5688999999999999999999999998752 34565 5666654321 123345899999887888889998887
Q ss_pred HHHHHHhc------C---CceEEEEecc------cccC-------CCCccCCccchhhHHHHHHHHHHH-----------
Q 017792 127 LVDTLIRS------G---SVDVVVVDSV------AALV-------PKGELDGEMGDAHMAMQARLMSQA----------- 173 (366)
Q Consensus 127 ~~~~~~~~------~---~~~lvviDsl------~~l~-------~~~~l~~~~g~~~~~~~ar~l~~~----------- 173 (366)
+...+... . .....++|.+ .... ....+++ |++++...|+++...
T Consensus 161 f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSG--GerkRvsIA~aL~~~p~vlllDEPTs 238 (1394)
T TIGR00956 161 FAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSG--GERKRVSIAEASLGGAKIQCWDNATR 238 (1394)
T ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCc--ccchHHHHHHHHHhCCCEEEEeCCCC
Confidence 65432100 0 0000011111 1100 0134555 899999999987654
Q ss_pred ---------HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 ---------LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 ---------L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++.+.+.+ .|.|||+++|.... .+..++|.++.|.+++++..|.
T Consensus 239 gLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~-----------------~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 239 GLDSATALEFIRALKTSANILDTTPLVAIYQCSQ-----------------DAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCH-----------------HHHHhhceEEEEeCCeEEEECC
Confidence 4444555544 58999999996421 0556789999999887666554
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4e-09 Score=92.92 Aligned_cols=75 Identities=21% Similarity=0.320 Sum_probs=59.2
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcce--ecCCCCHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLL--LAQPDCGEQALSLV 128 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~--~~~~~~~e~~l~~~ 128 (366)
-|+.|+++.|.|.||+|||||+..+++.+.+.+|. ++|++.+... ..++..++-++|++. .+...|++|++..+
T Consensus 28 ~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~-I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la 106 (263)
T COG1101 28 EIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQ-ILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALA 106 (263)
T ss_pred eecCCceEEEEcCCCccHHHHHHHhhCccccCCce-EEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHH
Confidence 38899999999999999999999999999999997 7888876544 345666677788775 34566778776654
Q ss_pred H
Q 017792 129 D 129 (366)
Q Consensus 129 ~ 129 (366)
.
T Consensus 107 ~ 107 (263)
T COG1101 107 E 107 (263)
T ss_pred H
Confidence 3
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.3e-10 Score=117.02 Aligned_cols=140 Identities=15% Similarity=0.140 Sum_probs=89.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV------ 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~------ 128 (366)
+++|++++|+||||||||||++.+++.+.+.+|. ++++. .+.+++.+|++.+... ++.+.+...
T Consensus 475 i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~-i~~~~--------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~ 544 (659)
T TIGR00954 475 VPSGNHLLICGPNGCGKSSLFRILGELWPVYGGR-LTKPA--------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDM 544 (659)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCe-EeecC--------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhh
Confidence 7799999999999999999999999988777776 44432 3467888888765544 555544321
Q ss_pred ----------HHHHhcCCceEE-----EEecccccCCCCccCCccchhhHHHHHHHHHHH-----------------HHH
Q 017792 129 ----------DTLIRSGSVDVV-----VVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-----------------LRK 176 (366)
Q Consensus 129 ----------~~~~~~~~~~lv-----viDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-----------------L~~ 176 (366)
...++..+..-. -+|..... ...+++ |++|+...||++... -..
T Consensus 545 ~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~--~~~LSg--GqkQRl~iARal~~~p~illLDEpts~LD~~~~~~ 620 (659)
T TIGR00954 545 KRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDW--MDVLSG--GEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGY 620 (659)
T ss_pred hccCCCHHHHHHHHHHcCCHHHHhhcCCccccccc--ccCCCH--HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 111111111000 01111110 134555 899999999988764 334
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEE
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIK 227 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~ 227 (366)
+...+++.++|+|+++|..+. + .+||+++.|.
T Consensus 621 l~~~l~~~~~tvI~isH~~~~------------------~-~~~d~il~l~ 652 (659)
T TIGR00954 621 MYRLCREFGITLFSVSHRKSL------------------W-KYHEYLLYMD 652 (659)
T ss_pred HHHHHHHcCCEEEEEeCchHH------------------H-HhCCEEEEEe
Confidence 444555679999999997643 2 3578888775
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.7e-10 Score=115.90 Aligned_cols=143 Identities=17% Similarity=0.191 Sum_probs=84.3
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHH------
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSL------ 127 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~------ 127 (366)
-+++|++++|+||||||||||++.+++.+.+..|.+ +++. ..++||.+|+.......+...++..
T Consensus 531 ~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I-~~~~--------~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~ 601 (718)
T PLN03073 531 GIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV-FRSA--------KVRMAVFSQHHVDGLDLSSNPLLYMMRCFPG 601 (718)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceE-EECC--------ceeEEEEeccccccCCcchhHHHHHHHhcCC
Confidence 377999999999999999999999999988887864 4432 1246666665311100111111111
Q ss_pred -----HHHHHhcCCceEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH-----------------HHHHHHHhhhc
Q 017792 128 -----VDTLIRSGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA-----------------LRKLSHSLSLS 184 (366)
Q Consensus 128 -----~~~~~~~~~~~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~l~~~ 184 (366)
+..++.... +. .... .+...+++ |++|+...||++... ...+...+.+.
T Consensus 602 ~~~~~i~~~L~~~g-----l~~~~~~-~~~~~LSg--GqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~ 673 (718)
T PLN03073 602 VPEQKLRAHLGSFG-----VTGNLAL-QPMYTLSG--GQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF 673 (718)
T ss_pred CCHHHHHHHHHHCC-----CChHHhc-CCccccCH--HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 111111111 11 0111 11234444 777777777776643 33444445554
Q ss_pred CcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece
Q 017792 185 QTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL 231 (366)
Q Consensus 185 ~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~ 231 (366)
+.|||+++|.... +..+||+++.|.++.+
T Consensus 674 ~gtvIivSHd~~~------------------i~~~~drv~~l~~G~i 702 (718)
T PLN03073 674 QGGVLMVSHDEHL------------------ISGSVDELWVVSEGKV 702 (718)
T ss_pred CCEEEEEECCHHH------------------HHHhCCEEEEEECCEE
Confidence 5699999997764 5567888888876654
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.7e-09 Score=92.13 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=57.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+.+|+++.|.||||+|||||++.+++.+++..|. +|+.++.... ..+.+.+-|.--+.-+-...|+.|++.+...+.
T Consensus 25 l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~-v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~ 103 (209)
T COG4133 25 LNAGEALQITGPNGAGKTTLLRILAGLLRPDAGE-VYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFH 103 (209)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCe-EEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHh
Confidence 4599999999999999999999999999999998 5666555433 224455545444555566778888887776654
Q ss_pred h
Q 017792 133 R 133 (366)
Q Consensus 133 ~ 133 (366)
.
T Consensus 104 ~ 104 (209)
T COG4133 104 G 104 (209)
T ss_pred C
Confidence 3
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-09 Score=116.49 Aligned_cols=166 Identities=16% Similarity=0.174 Sum_probs=119.1
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
-.+++|++.++.|+|||||||+...+.+...+.+|. +|+.+..... ....+.+||.||...+.+..|..|.+.+.
T Consensus 586 ~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~-a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~ 664 (885)
T KOG0059|consen 586 FAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGE-ALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFY 664 (885)
T ss_pred EEecCCceEEEecCCCCCchhhHHHHhCCccCCcce-EEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHH
Confidence 579999999999999999999999999999998887 6665544322 24678899999998888888888876653
Q ss_pred HHHH--------------------------------------------hcCCceEEEEecccccCCCCccCCccchhhHH
Q 017792 129 DTLI--------------------------------------------RSGSVDVVVVDSVAALVPKGELDGEMGDAHMA 164 (366)
Q Consensus 129 ~~~~--------------------------------------------~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~ 164 (366)
..+. --+.+.++.+|..++-..
T Consensus 665 arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmD-------------- 730 (885)
T KOG0059|consen 665 ARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLD-------------- 730 (885)
T ss_pred HHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCC--------------
Confidence 3211 013467777777554431
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEE
Q 017792 165 MQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIA 244 (366)
Q Consensus 165 ~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~ 244 (366)
..+| +.++.+.+.+++.+..||+|+|.+++ .+++|++.-.|.+++...-|.
T Consensus 731 P~ar---r~lW~ii~~~~k~g~aiiLTSHsMeE------------------~EaLCtR~aImv~G~l~ciGs-------- 781 (885)
T KOG0059|consen 731 PKAR---RHLWDIIARLRKNGKAIILTSHSMEE------------------AEALCTRTAIMVIGQLRCIGS-------- 781 (885)
T ss_pred HHHH---HHHHHHHHHHHhcCCEEEEEcCCHHH------------------HHHHhhhhheeecCeeEEecC--------
Confidence 1233 45777777777877799999998876 677899988888876554442
Q ss_pred EEEEecCCCCCCCeeEEEEEe
Q 017792 245 VKIVKNKLAPPFKTAQFELEF 265 (366)
Q Consensus 245 l~v~K~r~~~~~~~~~~~i~~ 265 (366)
..-.|+|++.- ..+++..
T Consensus 782 ~q~LKsrfG~g---y~l~~~~ 799 (885)
T KOG0059|consen 782 PQELKSRYGSG---YTLTVRI 799 (885)
T ss_pred hHHHHhhcCCc---EEEEEEE
Confidence 22357887754 4555543
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.6e-09 Score=93.88 Aligned_cols=57 Identities=25% Similarity=0.334 Sum_probs=43.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC---CCHHHHhhcccccC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTE 111 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~---~~~~~~~~ig~~~~ 111 (366)
+++|+-..|+||||||||||+..+++...+..+.+..+..... ...++++++|++..
T Consensus 54 V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~ 113 (257)
T COG1119 54 VNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSS 113 (257)
T ss_pred ecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCH
Confidence 7899999999999999999999999988887666555443322 11577888888653
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.4e-09 Score=90.08 Aligned_cols=136 Identities=21% Similarity=0.240 Sum_probs=91.1
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC-C----------HHHHhhcccccCcceecCCCCH-
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-D----------PSLAETIGVKTENLLLAQPDCG- 121 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~-~----------~~~~~~ig~~~~~~~~~~~~~~- 121 (366)
-+..|+++++-||+|+|||||++++.+++.+++|. +++-.+... + ..+.+.+||+.|-+.+.+..+.
T Consensus 33 sV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~-I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aL 111 (235)
T COG4778 33 SVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQ-ILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSAL 111 (235)
T ss_pred EecCccEEEeeCCCCCcHHHHHHHHHhccCCCCce-EEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchH
Confidence 36789999999999999999999999999999887 566544321 1 1345668999887666554332
Q ss_pred --------------HHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------
Q 017792 122 --------------EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------- 173 (366)
Q Consensus 122 --------------e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------- 173 (366)
+........++...+. -..+-.+.| ..+++ |++|+..+||-+.-.
T Consensus 112 dVvaePll~~gv~~~~a~~~a~~Ll~rLnl----perLW~LaP-aTFSG--GEqQRVNIaRgfivd~pILLLDEPTasLD 184 (235)
T COG4778 112 DVVAEPLLARGVPREVARAKAADLLTRLNL----PERLWSLAP-ATFSG--GEQQRVNIARGFIVDYPILLLDEPTASLD 184 (235)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCC----CHHHhcCCC-cccCC--chheehhhhhhhhccCceEEecCCccccc
Confidence 2222333333332222 123334443 55666 788888888865432
Q ss_pred ------HHHHHHHhhhcCcEEEEEecCCcc
Q 017792 174 ------LRKLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 174 ------L~~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
...|+...+..|+++|-|=|..+.
T Consensus 185 a~Nr~vVveli~e~Ka~GaAlvGIFHDeev 214 (235)
T COG4778 185 ATNRAVVVELIREAKARGAALVGIFHDEEV 214 (235)
T ss_pred ccchHHHHHHHHHHHhcCceEEEeeccHHH
Confidence 667777778889999999996543
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.4e-09 Score=109.86 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=34.1
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
-+++|++++|+||||||||||++.+++...+..|.+ +++.
T Consensus 25 ~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I-~~~~ 64 (635)
T PRK11147 25 HIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRI-IYEQ 64 (635)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE-EeCC
Confidence 377999999999999999999999999888877764 4443
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=3e-09 Score=119.39 Aligned_cols=164 Identities=16% Similarity=0.177 Sum_probs=106.4
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~---gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
|=+++|++++|.||||||||||++.+++.+.+. .|. +++++....+....+.++|++|+..+....|+.|.+.+..
T Consensus 186 ~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~-I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a 264 (1470)
T PLN03140 186 GIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGE-ITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSA 264 (1470)
T ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeE-EEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHH
Confidence 568999999999999999999999999988765 566 4556543322222456899999887778889999887754
Q ss_pred HHHhcC-------------C-------ceE---------------EEEecccccCC-------------CCccCCccchh
Q 017792 130 TLIRSG-------------S-------VDV---------------VVVDSVAALVP-------------KGELDGEMGDA 161 (366)
Q Consensus 130 ~~~~~~-------------~-------~~l---------------vviDsl~~l~~-------------~~~l~~~~g~~ 161 (366)
.+...+ + .++ .++|.+...+. ...+++ |++
T Consensus 265 ~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSG--Ger 342 (1470)
T PLN03140 265 RCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISG--GQK 342 (1470)
T ss_pred HhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCc--ccc
Confidence 321000 0 000 01121111110 124555 888
Q ss_pred hHHHHHHHHHHH--------------------HHHHHHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeec
Q 017792 162 HMAMQARLMSQA--------------------LRKLSHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYA 220 (366)
Q Consensus 162 ~~~~~ar~l~~~--------------------L~~L~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~a 220 (366)
++...++++... +.++.+.+. ..|.|||+++|.... . +..++
T Consensus 343 kRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~----------~-------i~~lf 405 (1470)
T PLN03140 343 KRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAP----------E-------TFDLF 405 (1470)
T ss_pred eeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCH----------H-------HHHHh
Confidence 888888776543 344444443 368999999995321 1 45678
Q ss_pred eEEEEEEEeceeecCc
Q 017792 221 SVRLNIKRIGLVKKGE 236 (366)
Q Consensus 221 d~~i~l~~~~~~~~~~ 236 (366)
|.++.|.+++++..|.
T Consensus 406 D~vilL~~G~ivy~G~ 421 (1470)
T PLN03140 406 DDIILLSEGQIVYQGP 421 (1470)
T ss_pred heEEEeeCceEEEeCC
Confidence 9999999887776654
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.1e-09 Score=110.86 Aligned_cols=40 Identities=25% Similarity=0.368 Sum_probs=34.0
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
-|.+|++++|+||||||||||++.+++...+..|.+ +++.
T Consensus 23 ~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I-~~~~ 62 (638)
T PRK10636 23 TINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSY-TFPG 62 (638)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecC
Confidence 377999999999999999999999999888877764 4443
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.2e-09 Score=88.44 Aligned_cols=59 Identities=25% Similarity=0.292 Sum_probs=46.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-------HH----HHhhcccccCcc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PS----LAETIGVKTENL 113 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-------~~----~~~~ig~~~~~~ 113 (366)
+.+|++.+|+|++|||||||+.++...+.+..|.+.|......+- .+ .....|++.||+
T Consensus 29 l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP 98 (258)
T COG4107 29 LYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNP 98 (258)
T ss_pred ecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCc
Confidence 569999999999999999999999999999999988877554322 11 223468887776
|
|
| >COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.8e-08 Score=93.48 Aligned_cols=133 Identities=19% Similarity=0.282 Sum_probs=92.4
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh----------cCCeEEEEeCCCCCCH------HHHhhcccccCcceec
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQR----------QGGYCVFIDAEHALDP------SLAETIGVKTENLLLA 116 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~----------~gg~vl~id~e~~~~~------~~~~~ig~~~~~~~~~ 116 (366)
+-+..|-...|+|++|+||||+++.++..+.. ..|.|+|++.|...+. ....++|+.+.++.-.
T Consensus 84 ~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~ 163 (402)
T COG3598 84 EFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNM 163 (402)
T ss_pred HHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhhe
Confidence 34457777788899999999999988776542 3478999999987653 2355677776655322
Q ss_pred CC------------CCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhc
Q 017792 117 QP------------DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLS 184 (366)
Q Consensus 117 ~~------------~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~ 184 (366)
+. ... .++......++...++++|||++.+++...+++. .+.+++...+++|.. ..
T Consensus 164 dltd~~Gaa~~~d~l~p-kl~rRfek~~~Q~rp~~vViDp~v~f~~G~s~s~--------vqv~~fi~~~rkla~---~l 231 (402)
T COG3598 164 DLTDVSGAADESDVLSP-KLYRRFEKILEQKRPDFVVIDPFVAFYEGKSISD--------VQVKEFIKKTRKLAR---NL 231 (402)
T ss_pred eccccccCCCccccccH-HHHHHHHHHHHHhCCCeEEEcchhhhcCCccchh--------HHHHHHHHHHHHHHH---hc
Confidence 21 111 3344444455566799999999999885333322 466777777888774 56
Q ss_pred CcEEEEEecCCcc
Q 017792 185 QTILIFINQVRAK 197 (366)
Q Consensus 185 ~~tVI~i~h~~~~ 197 (366)
+|+||++.|....
T Consensus 232 ~caIiy~hHtsks 244 (402)
T COG3598 232 ECAIIYIHHTSKS 244 (402)
T ss_pred CCeEEEEeccccc
Confidence 9999999997664
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.7e-09 Score=92.61 Aligned_cols=84 Identities=23% Similarity=0.234 Sum_probs=60.5
Q ss_pred ChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHH-HhhcccccCcceecC
Q 017792 42 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSL-AETIGVKTENLLLAQ 117 (366)
Q Consensus 42 G~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~-~~~ig~~~~~~~~~~ 117 (366)
|+..|+.+-- -+.+|++-.|+||||+|||||+-.+.+...+..|+|+|-+..+... ..+ ..-+|-.+|.+.++.
T Consensus 17 GF~Aln~ls~--~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe 94 (249)
T COG4674 17 GFKALNDLSF--SVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFE 94 (249)
T ss_pred ceeeeeeeEE--EecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehh
Confidence 4445544432 4789999999999999999999999999998888855544233322 223 334677888888888
Q ss_pred CCCHHHHHHH
Q 017792 118 PDCGEQALSL 127 (366)
Q Consensus 118 ~~~~e~~l~~ 127 (366)
..++.++++.
T Consensus 95 ~ltV~eNLel 104 (249)
T COG4674 95 NLTVRENLEL 104 (249)
T ss_pred hccHHHHHHH
Confidence 8888777655
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-08 Score=109.23 Aligned_cols=155 Identities=21% Similarity=0.264 Sum_probs=104.6
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCC-----------
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPD----------- 119 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~----------- 119 (366)
-+++|+.++|+||+||||||....+-+.+.+..|. +.+|+.+..+ .-+++++|++.|.+.++...
T Consensus 1012 ~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~-V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~ 1090 (1228)
T KOG0055|consen 1012 SIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGK-VKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEE 1090 (1228)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCe-EEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCC
Confidence 37899999999999999999998888888888885 8899877654 45688899999988765432
Q ss_pred -CHHHHHHHHHHHHhcCCceEEEEeccc----ccCC--CCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 120 -CGEQALSLVDTLIRSGSVDVVVVDSVA----ALVP--KGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 120 -~~e~~l~~~~~~~~~~~~~lvviDsl~----~l~~--~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
+.+++.+.+... ..++ +|.++. .... ...++| |++||..+||++.+.
T Consensus 1091 vs~~eIi~Aak~A-NaH~----FI~sLP~GyDT~vGerG~QLSG--GQKQRIAIARAilRnPkILLLDEATSALDseSEr 1163 (1228)
T KOG0055|consen 1091 VSEEEIIEAAKLA-NAHN----FISSLPQGYDTRVGERGVQLSG--GQKQRIAIARAILRNPKILLLDEATSALDSESER 1163 (1228)
T ss_pred CCHHHHHHHHHHh-hhHH----HHhcCcCcccCccCcccCcCCc--hHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHH
Confidence 333443332211 0000 112221 1121 244555 899999999998764
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.+-...+ ..|.|.|+|.|..+-+. .||.+..++++.++.+|+
T Consensus 1164 vVQeALd~a-~~gRT~IvIAHRLSTIq-------------------naD~I~Vi~~G~VvE~Gt 1207 (1228)
T KOG0055|consen 1164 VVQEALDRA-MEGRTTIVIAHRLSTIQ-------------------NADVIAVLKNGKVVEQGT 1207 (1228)
T ss_pred HHHHHHHHh-hcCCcEEEEecchhhhh-------------------cCCEEEEEECCEEEeccc
Confidence 22222222 25899999999765432 478888999888777764
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.7e-09 Score=100.20 Aligned_cols=154 Identities=19% Similarity=0.298 Sum_probs=97.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEeCCCCCC---HH----HHhhcccccCcceecC-C-CC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHALD---PS----LAETIGVKTENLLLAQ-P-DC 120 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-----gg~vl~id~e~~~~---~~----~~~~ig~~~~~~~~~~-~-~~ 120 (366)
+.+|+.++|+|++|||||..++.+++++... +|. +.+++++... .. +-.++++.+|++...- | .+
T Consensus 33 i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~-i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~t 111 (534)
T COG4172 33 IEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGS-ILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHT 111 (534)
T ss_pred ecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccce-eEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhH
Confidence 6799999999999999999999999998763 344 5667666543 22 2346889998775432 2 12
Q ss_pred HH-HHHHHH---------------HHHHhcCCceEEEEecccc---cCCCCccCCccchhhHHHHHHHHHHH--------
Q 017792 121 GE-QALSLV---------------DTLIRSGSVDVVVVDSVAA---LVPKGELDGEMGDAHMAMQARLMSQA-------- 173 (366)
Q Consensus 121 ~e-~~l~~~---------------~~~~~~~~~~lvviDsl~~---l~~~~~l~~~~g~~~~~~~ar~l~~~-------- 173 (366)
++ ++.+.+ ..++ +.+-|..... -+ ..+++| |++|+.++|.+++..
T Consensus 112 Ig~Qi~E~l~~Hrg~~~~~Ar~r~lelL-----~~VgI~~p~~rl~~y-PHeLSG--GqRQRVMIAMALan~P~lLIADE 183 (534)
T COG4172 112 IGKQLAEVLRLHRGLSRAAARARALELL-----ELVGIPEPEKRLDAY-PHELSG--GQRQRVMIAMALANEPDLLIADE 183 (534)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHH-----HHcCCCchhhhhhhC-CcccCc--chhhHHHHHHHHcCCCCeEeecC
Confidence 22 222222 1111 1111222111 12 245666 888888888877653
Q ss_pred ------------HHHHHHHh-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 ------------LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 ------------L~~L~~~l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+..|.+.| ++.|.+++||+|...- +..+||++..|++++++..+
T Consensus 184 PTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~i------------------Vr~~ADrV~VM~~G~ivE~~ 240 (534)
T COG4172 184 PTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI------------------VRKFADRVYVMQHGEIVETG 240 (534)
T ss_pred CcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHH------------------HHHhhhhEEEEeccEEeecC
Confidence 33333333 4679999999997643 56778888888888776654
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.1e-09 Score=108.39 Aligned_cols=165 Identities=19% Similarity=0.172 Sum_probs=108.6
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh---cCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQR---QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~---~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
|=+.+|++++|.||+|||||||+..+++.... .+| .+.++++....+.+.+..||+.|+-.+....|++|.+.+..
T Consensus 51 g~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G-~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A 129 (613)
T KOG0061|consen 51 GTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSG-EILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSA 129 (613)
T ss_pred EEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceE-EEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHH
Confidence 56889999999999999999999999998864 244 58888877767788888999999998888899988876654
Q ss_pred HHHhcC----CceEEEEeccccc----------C---CCCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 130 TLIRSG----SVDVVVVDSVAAL----------V---PKGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 130 ~~~~~~----~~~lvviDsl~~l----------~---~~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
.+.-.. ..+...||.+... . ....+++ |++.|...|..+...
T Consensus 130 ~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG--GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~ 207 (613)
T KOG0061|consen 130 LLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG--GERKRVSIALELLTDPSILFLDEPTSGLDSFSAL 207 (613)
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc--chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHH
Confidence 432111 0011111111110 1 0122333 666666666554432
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCcc
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEE 237 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~ 237 (366)
+..+.+.+.+.|+|||++-|..+. .+-+.-|.++.|.+|..+..|..
T Consensus 208 ~vv~~Lk~lA~~grtVi~tIHQPss-----------------~lf~lFD~l~lLs~G~~vy~G~~ 255 (613)
T KOG0061|consen 208 QVVQLLKRLARSGRTVICTIHQPSS-----------------ELFELFDKLLLLSEGEVVYSGSP 255 (613)
T ss_pred HHHHHHHHHHhCCCEEEEEEeCCcH-----------------HHHHHHhHhhhhcCCcEEEecCH
Confidence 333333333449999999996542 15666788888888877777653
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.8e-09 Score=112.16 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=34.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH---hhcCCeEEEEeCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA---QRQGGYCVFIDAE 95 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~---~~~gg~vl~id~e 95 (366)
|++|+.++|+|+||||||||++.+++.. .+.++.+.|+..+
T Consensus 200 i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~ 243 (718)
T PLN03073 200 LAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQE 243 (718)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEecc
Confidence 7899999999999999999999998743 3556778887654
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-08 Score=94.59 Aligned_cols=153 Identities=18% Similarity=0.218 Sum_probs=85.8
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHH-hh-------------------cCCeEEEEeCCCCCC------HHH---Hh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEA-QR-------------------QGGYCVFIDAEHALD------PSL---AE 104 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~-~~-------------------~gg~vl~id~e~~~~------~~~---~~ 104 (366)
-||.|.+++|.|++|||||||+..+..-. .. .-..++++|....-. ..+ ..
T Consensus 17 ~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ty~~~~~ 96 (261)
T cd03271 17 DIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPATYTGVFD 96 (261)
T ss_pred eccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHHHHHHHHH
Confidence 47899999999999999999998774211 11 012467777653211 010 00
Q ss_pred --------------------hcccccCcceecCCCCHHHHHHHHHHHHhcC----CceEEEEecccccCCCCccCCccch
Q 017792 105 --------------------TIGVKTENLLLAQPDCGEQALSLVDTLIRSG----SVDVVVVDSVAALVPKGELDGEMGD 160 (366)
Q Consensus 105 --------------------~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~----~~~lvviDsl~~l~~~~~l~~~~g~ 160 (366)
.+.|...++..+...++.+.++++..+-... -...+-++.+..-.+...+++ |+
T Consensus 97 ~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~~LSg--Ge 174 (261)
T cd03271 97 EIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSG--GE 174 (261)
T ss_pred HHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCccccCCH--HH
Confidence 1223333343344567777766554321000 001111222110111234444 78
Q ss_pred hhHHHHHHHHHH-----H------------------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceee
Q 017792 161 AHMAMQARLMSQ-----A------------------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALK 217 (366)
Q Consensus 161 ~~~~~~ar~l~~-----~------------------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~ 217 (366)
+|+...++++.. . +..+...+.+.|.|||+++|..+. +.
T Consensus 175 ~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~------------------i~ 236 (261)
T cd03271 175 AQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDV------------------IK 236 (261)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH------------------HH
Confidence 888888888765 1 555555556679999999997653 32
Q ss_pred eeceEEEEEE
Q 017792 218 FYASVRLNIK 227 (366)
Q Consensus 218 ~~ad~~i~l~ 227 (366)
.||.++.|.
T Consensus 237 -~aD~ii~Lg 245 (261)
T cd03271 237 -CADWIIDLG 245 (261)
T ss_pred -hCCEEEEec
Confidence 478888883
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-08 Score=109.76 Aligned_cols=163 Identities=17% Similarity=0.246 Sum_probs=109.4
Q ss_pred HHHhhCCC---CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCC-
Q 017792 46 LDIALGTG---GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQP- 118 (366)
Q Consensus 46 LD~~L~~G---Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~- 118 (366)
|+.+|. | =|++|+-++|+|++|||||||++.+-+...+.+|. +.||+-+..+ ..+++++++.||++.++..
T Consensus 1152 lp~VLk-~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~-I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGT 1229 (1381)
T KOG0054|consen 1152 LPLVLK-GISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGE-ILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGT 1229 (1381)
T ss_pred Ccchhc-CceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCe-EEEcCeecccccHHHHHhcCeeeCCCCceecCc
Confidence 455565 2 26799999999999999999999999988887775 8899887665 5788999999998876642
Q ss_pred ----------CCHHHHHHHHHH-----HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH----------
Q 017792 119 ----------DCGEQALSLVDT-----LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA---------- 173 (366)
Q Consensus 119 ----------~~~e~~l~~~~~-----~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------- 173 (366)
.+-+++.+.++. .+++...+ +|+ ......-+-+.|++|....||++.+.
T Consensus 1230 vR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~---Ld~---~v~egG~N~SvGQRQLlCLARALLr~skILvLDEAT 1303 (1381)
T KOG0054|consen 1230 VRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGG---LDS---EVSEGGENFSVGQRQLLCLARALLRKSKILVLDEAT 1303 (1381)
T ss_pred cccccCcccccCHHHHHHHHHHhChHHHHhhCCcC---CCc---eecCCCccCChHHHHHHHHHHHHhccCCEEEEeccc
Confidence 233444444332 23221111 222 22222233345888888888888765
Q ss_pred ----------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 ----------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 ----------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.+.++. +=.+||||.|.|....+ .-||+++.|++|++..-+.
T Consensus 1304 AsVD~~TD~lIQ~tIR~-~F~dcTVltIAHRl~TV-------------------md~DrVlVld~G~v~Efds 1356 (1381)
T KOG0054|consen 1304 ASVDPETDALIQKTIRE-EFKDCTVLTIAHRLNTV-------------------MDSDRVLVLDAGRVVEFDS 1356 (1381)
T ss_pred ccCChHHHHHHHHHHHH-HhcCCeEEEEeeccchh-------------------hhcCeEEEeeCCeEeecCC
Confidence 3333322 12599999999976531 1379999999887655544
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.1e-09 Score=92.04 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=38.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC--------eEEEEeCCCCCCHHHHhhcccccCcce
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG--------YCVFIDAEHALDPSLAETIGVKTENLL 114 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg--------~vl~id~e~~~~~~~~~~ig~~~~~~~ 114 (366)
+++| +++|+||||||||||+..++..+.+..+ ..+++.+..........++++.+|+..
T Consensus 20 ~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~ 86 (197)
T cd03278 20 FPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSD 86 (197)
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCC
Confidence 5578 9999999999999999999877643211 113333332222223466888887654
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.7e-09 Score=116.59 Aligned_cols=146 Identities=17% Similarity=0.195 Sum_probs=91.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHH-----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVD----- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~----- 129 (366)
+++|++++|+||+|||||||++.+++.+.+..|. +++++ +++|.+|++.++. .|+.+++.+-.
T Consensus 449 i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~-i~~~g----------~iayv~Q~~~l~~-~Ti~eNI~~g~~~~~~ 516 (1490)
T TIGR01271 449 LEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGK-IKHSG----------RISFSPQTSWIMP-GTIKDNIIFGLSYDEY 516 (1490)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECC----------EEEEEeCCCccCC-ccHHHHHHhccccchH
Confidence 7799999999999999999999999999888886 45554 4788888877655 36666544211
Q ss_pred ---HHHhcCCceEEEEecc----cccCC--CCccCCccchhhHHHHHHHHHHH--------------------HH-HHHH
Q 017792 130 ---TLIRSGSVDVVVVDSV----AALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LR-KLSH 179 (366)
Q Consensus 130 ---~~~~~~~~~lvviDsl----~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~-~L~~ 179 (366)
..+...... -.++.+ ..... ...+++ |++|+...||++... +. .+..
T Consensus 517 ~~~~~~~~~~L~-~~l~~l~~g~~t~vg~~g~~LSg--GqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~ 593 (1490)
T TIGR01271 517 RYTSVIKACQLE-EDIALFPEKDKTVLGEGGITLSG--GQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLC 593 (1490)
T ss_pred HHHHHHHHHhHH-HHHHhccccccccccCcCCCcCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 111000000 000000 00011 123444 889999999987653 22 2222
Q ss_pred HhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 180 SLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 180 ~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
.+. .++|||+++|.... +. .||+++.|.++.+...|
T Consensus 594 ~~~-~~~tvilvtH~~~~------------------~~-~ad~ii~l~~g~i~~~g 629 (1490)
T TIGR01271 594 KLM-SNKTRILVTSKLEH------------------LK-KADKILLLHEGVCYFYG 629 (1490)
T ss_pred HHh-cCCeEEEEeCChHH------------------HH-hCCEEEEEECCEEEEEc
Confidence 222 48999999997643 33 37888888876655443
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-09 Score=90.11 Aligned_cols=69 Identities=25% Similarity=0.350 Sum_probs=56.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
+++|++++|+|+||||||||++.+++...+..|. ++++...... ..+.+.+++.+++..+....++.+.
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~-i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGS-ILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSSHESEEE-EEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred EcCCCEEEEEccCCCccccceeeecccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence 6799999999999999999999999988877675 6777665544 4567889999999888777776654
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.1e-08 Score=86.04 Aligned_cols=124 Identities=23% Similarity=0.313 Sum_probs=73.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceE
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDV 139 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~l 139 (366)
++.|.|++|||||+|+.+++.. .+.+++|+.+...++..+.+++.-.-+. .-....+.|...+....+......+.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~~d~em~~rI~~H~~~-R~~~w~t~E~~~~l~~~l~~~~~~~~ 76 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEAFDDEMAERIARHRKR-RPAHWRTIETPRDLVSALKELDPGDV 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCcCCHHHHHHHHHHHHh-CCCCceEeecHHHHHHHHHhcCCCCE
Confidence 4789999999999999999765 4678999999988887666554331110 00011122222222222211124678
Q ss_pred EEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEec
Q 017792 140 VVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ 193 (366)
Q Consensus 140 vviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h 193 (366)
++||+++.+.. +.+....+. . ...+...+..|...+++.++++|+++.
T Consensus 77 VLIDclt~~~~-n~l~~~~~~--~---~~~~~~~i~~l~~~l~~~~~~~viVsn 124 (169)
T cd00544 77 VLIDCLTLWVT-NLLFADLEE--W---EAAIADEIDALLAAVRNKPGTLILVSN 124 (169)
T ss_pred EEEEcHhHHHH-HhCCCcccc--c---hhHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 99999998873 333221110 0 011234566677777778888888865
|
CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-08 Score=102.76 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=32.3
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeE
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYC 89 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~v 89 (366)
-+.+|+.++|+|+||+|||||++.+++...+..|.+
T Consensus 25 ~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i 60 (530)
T COG0488 25 TLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60 (530)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeE
Confidence 478999999999999999999999999998877754
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-08 Score=116.01 Aligned_cols=147 Identities=15% Similarity=0.189 Sum_probs=90.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-CeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQG-GYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSL------ 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g-g~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~------ 127 (366)
+++|++++|+||+|||||||+..+++.+.+.. |.+. + ..+++|.+|++.++.. |+.+++.+
T Consensus 640 i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~-l----------~~~Iayv~Q~p~Lfng-TIreNI~fg~~~d~ 707 (1622)
T PLN03130 640 VPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV-I----------RGTVAYVPQVSWIFNA-TVRDNILFGSPFDP 707 (1622)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEE-E----------cCeEEEEcCccccCCC-CHHHHHhCCCcccH
Confidence 78999999999999999999999999999887 7643 2 3468888888776543 44443321
Q ss_pred --HHHHHhcCCc--eE-EEEecccccCCC--CccCCccchhhHHHHHHHHHHH---------------------HHHHHH
Q 017792 128 --VDTLIRSGSV--DV-VVVDSVAALVPK--GELDGEMGDAHMAMQARLMSQA---------------------LRKLSH 179 (366)
Q Consensus 128 --~~~~~~~~~~--~l-vviDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~---------------------L~~L~~ 179 (366)
..+.++.-.. ++ ..-+........ ..++| |++||...||++.+. +.++..
T Consensus 708 e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSG--GQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~ 785 (1622)
T PLN03130 708 ERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISG--GQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIK 785 (1622)
T ss_pred HHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCH--HHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhh
Confidence 1111111000 00 000111222222 23444 899999999987653 223222
Q ss_pred HhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 180 SLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 180 ~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
.+ ..++|+|+++|.... -..||.++.|+++.+...|
T Consensus 786 ~~-l~~kTvIlVTH~l~~-------------------l~~aD~Ii~L~~G~i~e~G 821 (1622)
T PLN03130 786 DE-LRGKTRVLVTNQLHF-------------------LSQVDRIILVHEGMIKEEG 821 (1622)
T ss_pred HH-hcCCEEEEEECCHhH-------------------HHhCCEEEEEeCCEEEEeC
Confidence 11 148999999996542 2247888888877665544
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-08 Score=114.95 Aligned_cols=148 Identities=16% Similarity=0.250 Sum_probs=90.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV------ 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~------ 128 (366)
+++|++++|+||+|||||||++.+++.+.+..|. +++++ +++|.+|++.+. ..|+.+++.+-
T Consensus 661 i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~-i~~~g----------~i~yv~Q~~~l~-~~Ti~eNI~~g~~~~~~ 728 (1522)
T TIGR00957 661 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH-VHMKG----------SVAYVPQQAWIQ-NDSLRENILFGKALNEK 728 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcE-EEECC----------EEEEEcCCcccc-CCcHHHHhhcCCccCHH
Confidence 7899999999999999999999999999888886 45553 578888887654 34555554321
Q ss_pred --HHHHhcCCc--eEEE-EecccccCC--CCccCCccchhhHHHHHHHHHHH---------------------HHHHHHH
Q 017792 129 --DTLIRSGSV--DVVV-VDSVAALVP--KGELDGEMGDAHMAMQARLMSQA---------------------LRKLSHS 180 (366)
Q Consensus 129 --~~~~~~~~~--~lvv-iDsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~---------------------L~~L~~~ 180 (366)
.+.+..... ++-. -+....... ...+++ |++|+...||++... +..+...
T Consensus 729 ~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSG--GQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~ 806 (1522)
T TIGR00957 729 YYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSG--GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGP 806 (1522)
T ss_pred HHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCH--HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhh
Confidence 111100000 0000 000011111 123444 899999999987653 2222211
Q ss_pred h-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 181 L-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 181 l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
. ...++|+|+++|.... +.+ ||+++.|+++.+...|
T Consensus 807 ~~~~~~~tvIlvTH~~~~------------------l~~-~D~ii~l~~G~i~~~g 843 (1522)
T TIGR00957 807 EGVLKNKTRILVTHGISY------------------LPQ-VDVIIVMSGGKISEMG 843 (1522)
T ss_pred hhhhcCCEEEEEeCChhh------------------hhh-CCEEEEecCCeEEeeC
Confidence 0 1247899999996643 333 7888888877655443
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.1e-08 Score=94.35 Aligned_cols=62 Identities=23% Similarity=0.321 Sum_probs=47.3
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceec
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 116 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~ 116 (366)
-|.+|+++-|+|.|||||||||+.+.+.++|+.|+ +++|++...+ .++++-+..++.+.+++
T Consensus 345 ~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~-I~ldg~pV~~e~ledYR~LfSavFsDyhLF 409 (546)
T COG4615 345 TIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGE-ILLDGKPVSAEQLEDYRKLFSAVFSDYHLF 409 (546)
T ss_pred EEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCc-eeECCccCCCCCHHHHHHHHHHHhhhHhhh
Confidence 36799999999999999999999999999999887 6777764433 34555555555554443
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4e-08 Score=94.34 Aligned_cols=162 Identities=18% Similarity=0.233 Sum_probs=103.6
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecC-----------C-
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQ-----------P- 118 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~-----------~- 118 (366)
-+|.|+.+.++|++|+||||+++.+...+..+.|. +.+|+.+..+ ..+.+.+|++||+--++. +
T Consensus 285 ~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~-I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~ 363 (497)
T COG5265 285 TIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS-ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPD 363 (497)
T ss_pred cccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce-EEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCcc
Confidence 37899999999999999999999999999988885 7888876654 467788999999765442 2
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-----------------HHHHHHHh
Q 017792 119 DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-----------------LRKLSHSL 181 (366)
Q Consensus 119 ~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~l 181 (366)
.+-++....++.. ..+..-...-|.....+....+.-+.|++|+...||.+.+. =+.+...+
T Consensus 364 at~eev~aaa~~a-qi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l 442 (497)
T COG5265 364 ATAEEVGAAAEAA-QIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAAL 442 (497)
T ss_pred ccHHHHHHHHHHh-hhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHH
Confidence 2344444333321 11111222233344444333443344889999999887764 11111111
Q ss_pred h--hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 182 S--LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 182 ~--~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+ ..|.|-+++.|..+.+- -||.+|.|+++.+...|.
T Consensus 443 ~~~~~~rttlviahrlsti~-------------------~adeiivl~~g~i~erg~ 480 (497)
T COG5265 443 REVSAGRTTLVIAHRLSTII-------------------DADEIIVLDNGRIVERGT 480 (497)
T ss_pred HHHhCCCeEEEEeehhhhcc-------------------CCceEEEeeCCEEEecCc
Confidence 1 25888888889665321 268888888887666553
|
|
| >PF13479 AAA_24: AAA domain | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.7e-08 Score=88.91 Aligned_cols=153 Identities=23% Similarity=0.208 Sum_probs=89.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHH-HHhhcccccCcceecCCCCHHHHHHHHHHHHh-cC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS-LAETIGVKTENLLLAQPDCGEQALSLVDTLIR-SG 135 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~-~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~-~~ 135 (366)
+-.++|+|+||+|||||+..+ +.++|+++|...... ... +....+..+.+++++.+..+.. ..
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g~~~~~~~~-------~~~~i~i~s~~~~~~~~~~l~~~~~ 67 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL--------PKPLFIDTENGSDSLKFLD-------DGDVIPITSWEDFLEALDELEEDEA 67 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCCccchhhhc-------CCCeeCcCCHHHHHHHHHHHHhccC
Confidence 346899999999999998887 457999999874421 111 1122233377788777665432 45
Q ss_pred CceEEEEecccccCC--CCccC----------CccchhhHHHHHHHHHHHHHHHHHH-hhhcCcEEEEEecCCcccc-cc
Q 017792 136 SVDVVVVDSVAALVP--KGELD----------GEMGDAHMAMQARLMSQALRKLSHS-LSLSQTILIFINQVRAKLS-TF 201 (366)
Q Consensus 136 ~~~lvviDsl~~l~~--~~~l~----------~~~g~~~~~~~ar~l~~~L~~L~~~-l~~~~~tVI~i~h~~~~~~-~~ 201 (366)
..+.|||||++.+.. ...+. +.++..+. ...+...+.++... ++..++.||+|.|...+-. ..
T Consensus 68 ~y~tiVIDsis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---yg~~~~~~~~~i~~l~~~~~~~VI~tah~~~~~~~~~ 144 (213)
T PF13479_consen 68 DYDTIVIDSISWLEDMCLEYICRQNKKKIKRSGDPDYGKG---YGELQQEFMRFIDKLLNALGKNVIFTAHAKEEEDEDG 144 (213)
T ss_pred CCCEEEEECHHHHHHHHHHHHhhhhcccccccCCCcccch---HHHHHHHHHHHHHHHHHHCCCcEEEEEEEEEEEcCCC
Confidence 789999999986531 00000 11111111 12233444455443 3458999999999876644 11
Q ss_pred c---CCCCeeeccCCceeeeeceEEEEEEE
Q 017792 202 G---FGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 202 ~---~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
+ ...|.....-.+.+...+|.+..+..
T Consensus 145 ~~~~~~~~~l~~k~~~~l~~~~D~V~~l~~ 174 (213)
T PF13479_consen 145 GKYTRYKPKLGKKVRNELPGWFDVVGRLRV 174 (213)
T ss_pred CceeEEeeccChhHHhhhhecccEEEEEEE
Confidence 1 11111111123557888999977763
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-08 Score=115.92 Aligned_cols=148 Identities=14% Similarity=0.154 Sum_probs=89.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHH-------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSL------- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~------- 127 (366)
+++|+.++|+|++|||||||+..+++.+.+..|.++.+ ...++|.+|++.++.. |+.+++.+
T Consensus 640 i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~----------~~~Iayv~Q~p~Lf~g-TIreNI~fg~~~~~e 708 (1495)
T PLN03232 640 IPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVI----------RGSVAYVPQVSWIFNA-TVRENILFGSDFESE 708 (1495)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEe----------cCcEEEEcCccccccc-cHHHHhhcCCccCHH
Confidence 78999999999999999999999999998876654432 3467888887766543 44443321
Q ss_pred -HHHHHhcCCc--eE-EEEecccccCCC--CccCCccchhhHHHHHHHHHHH---------------------HHHHHHH
Q 017792 128 -VDTLIRSGSV--DV-VVVDSVAALVPK--GELDGEMGDAHMAMQARLMSQA---------------------LRKLSHS 180 (366)
Q Consensus 128 -~~~~~~~~~~--~l-vviDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~---------------------L~~L~~~ 180 (366)
..+.++.-.. ++ ..-+........ ..++| |++||...||++.+. +.++...
T Consensus 709 ~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSG--GQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~ 786 (1495)
T PLN03232 709 RYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISG--GQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKD 786 (1495)
T ss_pred HHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCH--HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhh
Confidence 1111110000 00 000111122222 22444 899999999987653 2332222
Q ss_pred hhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 181 l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+ ..++|+|+++|..+. -..||.++.|+++.+...|
T Consensus 787 ~-l~~kT~IlvTH~~~~-------------------l~~aD~Ii~L~~G~i~~~G 821 (1495)
T PLN03232 787 E-LKGKTRVLVTNQLHF-------------------LPLMDRIILVSEGMIKEEG 821 (1495)
T ss_pred h-hcCCEEEEEECChhh-------------------HHhCCEEEEEeCCEEEEec
Confidence 1 257999999996532 2247888888877665544
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.1e-08 Score=95.22 Aligned_cols=110 Identities=20% Similarity=0.229 Sum_probs=70.4
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH-H----------HHh
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-S----------LAE 104 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~-~----------~~~ 104 (366)
.+.+.||+..+|.++. +.+|+.++|+|++|+|||||+.++++...+..+ ++.+.++...+- . +.+
T Consensus 139 ~~~l~tg~~vid~l~~---i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~g-vI~~~Gerg~ev~e~~~~~l~~~~l~r 214 (438)
T PRK07721 139 REPMEVGVRAIDSLLT---VGKGQRVGIFAGSGVGKSTLMGMIARNTSADLN-VIALIGERGREVREFIERDLGPEGLKR 214 (438)
T ss_pred ccccccchhhhheeee---ecCCcEEEEECCCCCCHHHHHHHHhcccCCCeE-EEEEEecCCccHHHHHHhhcChhhhcC
Confidence 3468999999999987 999999999999999999999888887766554 455655544321 1 112
Q ss_pred hccccc--CcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccC
Q 017792 105 TIGVKT--ENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 105 ~ig~~~--~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
.+.+.. ++....+.....-.+..++.+...+.--++++||++.+.
T Consensus 215 ~v~vv~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A 261 (438)
T PRK07721 215 SIVVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVA 261 (438)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHH
Confidence 222221 111111111223334445555556677788999997654
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.6e-08 Score=95.52 Aligned_cols=154 Identities=16% Similarity=0.217 Sum_probs=92.8
Q ss_pred cCChHHHHHhhC-------CCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCe-----EE----EEeCCCC--CCHH
Q 017792 40 STGSFALDIALG-------TGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY-----CV----FIDAEHA--LDPS 101 (366)
Q Consensus 40 ~TG~~~LD~~L~-------~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~-----vl----~id~e~~--~~~~ 101 (366)
--.+++|...+| .|.|..|++++++||||.|||||++.+++.+.+..|. +- ||..+.. ....
T Consensus 342 lv~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~ 421 (591)
T COG1245 342 LVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDL 421 (591)
T ss_pred eeecchheeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHH
Confidence 345566666555 4789999999999999999999999999999887552 11 2222211 1111
Q ss_pred HHhhcc--cc--cCcceecCCCCHHHHHHH-------------HHHHHhcCCceEEEEecccccCCCCccCCccchhhHH
Q 017792 102 LAETIG--VK--TENLLLAQPDCGEQALSL-------------VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMA 164 (366)
Q Consensus 102 ~~~~ig--~~--~~~~~~~~~~~~e~~l~~-------------~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~ 164 (366)
+..... +. .=...+..|...+.+++. +....-....++.++|..++.+. ..|+.
T Consensus 422 l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LD---------vEqR~ 492 (591)
T COG1245 422 LRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLD---------VEQRI 492 (591)
T ss_pred HHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhcc---------HHHHH
Confidence 111111 11 111223445555544332 11222244678889999888772 12222
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEE
Q 017792 165 MQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIK 227 (366)
Q Consensus 165 ~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~ 227 (366)
..++.+++++ ...+.|.+++.|..-- +.+++|+++.+.
T Consensus 493 ----~vakvIRR~~---e~~~kta~vVdHDi~~------------------~dyvsDr~ivF~ 530 (591)
T COG1245 493 ----IVAKVIRRFI---ENNEKTALVVDHDIYM------------------IDYVSDRLIVFE 530 (591)
T ss_pred ----HHHHHHHHHH---hhcCceEEEEecceeh------------------hhhhhceEEEEe
Confidence 2344666666 4578999999996532 677888887765
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.7e-08 Score=90.63 Aligned_cols=22 Identities=41% Similarity=0.765 Sum_probs=20.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLAL 76 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~ 76 (366)
+++|++++|+|+||||||||+.
T Consensus 18 i~~Ge~~~l~G~sGsGKSTL~~ 39 (226)
T cd03270 18 IPRNKLVVITGVSGSGKSSLAF 39 (226)
T ss_pred cCCCcEEEEEcCCCCCHHHHHH
Confidence 6799999999999999999963
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.7e-08 Score=88.77 Aligned_cols=148 Identities=19% Similarity=0.231 Sum_probs=81.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHh---------------hc-CC--------eEEEEeCCCC-CC-----HHHHhhcc
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQ---------------RQ-GG--------YCVFIDAEHA-LD-----PSLAETIG 107 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~---------------~~-gg--------~vl~id~e~~-~~-----~~~~~~ig 107 (366)
|++++|+||||||||||+.+++..+. .. .+ .++| +..+. +. ....+.++
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~-~~~~~~~~~~~~~~~i~r~ig 101 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIF-DNSDNRFPIDKEEVRLRRTIG 101 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEE-EcCCCccCCCCCEEEEEEEEE
Confidence 57999999999999999999974421 11 12 3333 33211 11 12345578
Q ss_pred cccCcceecC-CCCHHHHHHHHHHHHhcC-Cce-EEE---EecccccC-----CCCccCCccchhhHHHHHHHHHH----
Q 017792 108 VKTENLLLAQ-PDCGEQALSLVDTLIRSG-SVD-VVV---VDSVAALV-----PKGELDGEMGDAHMAMQARLMSQ---- 172 (366)
Q Consensus 108 ~~~~~~~~~~-~~~~e~~l~~~~~~~~~~-~~~-lvv---iDsl~~l~-----~~~~l~~~~g~~~~~~~ar~l~~---- 172 (366)
+.++++.+.. ..+.+++...+..+--.. ... .+- +..+..+. +...+++ |++++...|++++.
T Consensus 102 ~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~--G~~~r~~la~~l~~~~~~ 179 (243)
T cd03272 102 LKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSG--GQKSLVALALIFAIQKCD 179 (243)
T ss_pred CCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCH--HHHHHHHHHHHHHHhccC
Confidence 8888777765 346677766665431110 000 110 11111111 1123333 78888888888852
Q ss_pred -H-------------------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 173 -A-------------------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 173 -~-------------------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
. +..+...+.+ +++||+++|... +..+||.++.|.-
T Consensus 180 ~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~-------------------~~~~~d~i~~l~~ 235 (243)
T cd03272 180 PAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPE-------------------LLEVADKFYGVKF 235 (243)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-------------------HHhhCCEEEEEEE
Confidence 1 3444444433 788998888642 3346788777753
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.4e-07 Score=75.04 Aligned_cols=92 Identities=33% Similarity=0.420 Sum_probs=58.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGS 136 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~ 136 (366)
.+..+.|+||+|+||||++..++..+......+++++.+........... ...................+........
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 36789999999999999999999988766546899988766543222211 0000001112233333334444444445
Q ss_pred ceEEEEecccccCC
Q 017792 137 VDVVVVDSVAALVP 150 (366)
Q Consensus 137 ~~lvviDsl~~l~~ 150 (366)
+.++++|++..+..
T Consensus 79 ~~viiiDei~~~~~ 92 (148)
T smart00382 79 PDVLILDEITSLLD 92 (148)
T ss_pred CCEEEEECCcccCC
Confidence 79999999998873
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.4e-08 Score=112.11 Aligned_cols=147 Identities=14% Similarity=0.217 Sum_probs=89.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHH-----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVD----- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~----- 129 (366)
+++|++++|+||||||||||++.+++.+.+..|.+ ++. .+++|.+|++.++ ..|+.+++.+..
T Consensus 683 i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i-~~~----------~~i~yv~Q~~~l~-~~Tv~enI~~~~~~~~~ 750 (1560)
T PTZ00243 683 VPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-WAE----------RSIAYVPQQAWIM-NATVRGNILFFDEEDAA 750 (1560)
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE-EEC----------CeEEEEeCCCccC-CCcHHHHHHcCChhhHH
Confidence 78999999999999999999999999988887874 332 4688888887664 346655543211
Q ss_pred ---HHHhcCCc--eE-EEEecccccCC--CCccCCccchhhHHHHHHHHHHH---------------------HHHHHHH
Q 017792 130 ---TLIRSGSV--DV-VVVDSVAALVP--KGELDGEMGDAHMAMQARLMSQA---------------------LRKLSHS 180 (366)
Q Consensus 130 ---~~~~~~~~--~l-vviDsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~---------------------L~~L~~~ 180 (366)
..+..... ++ .+-+.+..... ...+++ |++|+...||++... +..+...
T Consensus 751 ~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSG--GQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~ 828 (1560)
T PTZ00243 751 RLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSG--GQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLG 828 (1560)
T ss_pred HHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCH--HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 11110000 00 00001111111 233444 889999999887653 2222211
Q ss_pred hhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 181 l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
...+.|+|+++|.... + ..||+++.|+++.+...|
T Consensus 829 -~~~~~TvIlvTH~~~~------------------~-~~ad~ii~l~~G~i~~~G 863 (1560)
T PTZ00243 829 -ALAGKTRVLATHQVHV------------------V-PRADYVVALGDGRVEFSG 863 (1560)
T ss_pred -hhCCCEEEEEeCCHHH------------------H-HhCCEEEEEECCEEEEec
Confidence 1248999999996653 2 247888888877655443
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.2e-08 Score=99.36 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=31.0
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG 87 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg 87 (366)
-.+.+|+.++|+||||+|||||++.+++...+..|
T Consensus 343 ~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G 377 (530)
T COG0488 343 FRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG 377 (530)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCc
Confidence 36889999999999999999999999888876644
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-07 Score=103.95 Aligned_cols=150 Identities=16% Similarity=0.223 Sum_probs=91.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCccee-----------cCCCCHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLL-----------AQPDCGEQ 123 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~-----------~~~~~~e~ 123 (366)
+++|++++|+|+.|||||+|+..+++++.+..|. +.+++. ++|.+|.+.+ -.+..-+-
T Consensus 544 i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~-v~v~gs----------iaYv~Q~pWI~ngTvreNILFG~~~d~~r 612 (1381)
T KOG0054|consen 544 IKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGS-VAVNGS----------VAYVPQQPWIQNGTVRENILFGSPYDEER 612 (1381)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCcccccce-EEEcCe----------EEEeccccHhhCCcHHHhhhcCccccHHH
Confidence 7899999999999999999999999999988775 445442 5566554443 33333333
Q ss_pred HHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH---------------------HHHHHHHhh
Q 017792 124 ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA---------------------LRKLSHSLS 182 (366)
Q Consensus 124 ~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------------L~~L~~~l~ 182 (366)
.-..+....-..+..++- +.=........++-+.|++||...||++-+. +.+.... -
T Consensus 613 Y~~Vi~aC~L~~Dle~Lp-~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~-~ 690 (1381)
T KOG0054|consen 613 YDKVIKACALKKDLEILP-FGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRG-L 690 (1381)
T ss_pred HHHHHHHccCHhHHhhcC-CCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHh-h
Confidence 323333221111111110 1111122233344344899999999987654 3333311 1
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
-.+.|+|++||... .-..||.++.|++|++...|+
T Consensus 691 L~~KT~ILVTHql~-------------------~L~~ad~Iivl~~G~I~~~Gt 725 (1381)
T KOG0054|consen 691 LRGKTVILVTHQLQ-------------------FLPHADQIIVLKDGKIVESGT 725 (1381)
T ss_pred hcCCEEEEEeCchh-------------------hhhhCCEEEEecCCeEecccC
Confidence 25799999999543 233579999999887766653
|
|
| >PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.7e-07 Score=81.53 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=72.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccc----cCcceec-CCCCHHHHHHHHHHHHh
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVK----TENLLLA-QPDCGEQALSLVDTLIR 133 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~----~~~~~~~-~~~~~e~~l~~~~~~~~ 133 (366)
.++.|.|++||||||++..++..+ +..++|+.+....+..+.+++..- ++..... .|....+ .+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~---~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~---~i~~~~- 74 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS---GLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAE---LLRADA- 74 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc---CCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHH---HHHhhc-
Confidence 578999999999999999997654 446789998777776655554321 1222111 1222222 222211
Q ss_pred cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecC
Q 017792 134 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 194 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~ 194 (366)
.+..+++||+++.+.. ..+..+ + ...+...+..+...+++.++|+|+|+..
T Consensus 75 -~~~~~VlID~Lt~~~~-n~l~~~--~------~~~~~~~l~~li~~L~~~~~tvVlVs~E 125 (170)
T PRK05800 75 -APGRCVLVDCLTTWVT-NLLFEE--G------EEAIAAEIDALLAALQQLPAKIILVTNE 125 (170)
T ss_pred -CCCCEEEehhHHHHHH-HHhccc--c------hHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 2356899999999862 222110 0 0112235666777777789888888763
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.6e-07 Score=85.16 Aligned_cols=124 Identities=19% Similarity=0.103 Sum_probs=74.5
Q ss_pred HHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C--HHHHhhcccccCcceecCCC
Q 017792 44 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D--PSLAETIGVKTENLLLAQPD 119 (366)
Q Consensus 44 ~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~--~~~~~~ig~~~~~~~~~~~~ 119 (366)
..|+.++..|-+ .-++|+||||||||||++.+++.+.+..|. +++++.... + ..++..+++.+|+.... ..
T Consensus 100 ~~l~~l~~~~~~---~~~~i~g~~g~GKttl~~~l~~~~~~~~G~-i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~-r~ 174 (270)
T TIGR02858 100 KLLPYLVRNNRV---LNTLIISPPQCGKTTLLRDLARILSTGISQ-LGLRGKKVGIVDERSEIAGCVNGVPQHDVGI-RT 174 (270)
T ss_pred HHHHHHHhCCCe---eEEEEEcCCCCCHHHHHHHHhCccCCCCce-EEECCEEeecchhHHHHHHHhcccccccccc-cc
Confidence 345566641222 568999999999999999999999887776 566655432 1 34555566666654322 21
Q ss_pred CHHHH---HHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCc
Q 017792 120 CGEQA---LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRA 196 (366)
Q Consensus 120 ~~e~~---l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~ 196 (366)
++.+. ..-+..++....++++++|.+... . .+..+...+. .|++||+++|...
T Consensus 175 ~v~~~~~k~~~~~~~i~~~~P~villDE~~~~--------------------e---~~~~l~~~~~-~G~~vI~ttH~~~ 230 (270)
T TIGR02858 175 DVLDGCPKAEGMMMLIRSMSPDVIVVDEIGRE--------------------E---DVEALLEALH-AGVSIIATAHGRD 230 (270)
T ss_pred cccccchHHHHHHHHHHhCCCCEEEEeCCCcH--------------------H---HHHHHHHHHh-CCCEEEEEechhH
Confidence 11110 112334455568999999995311 0 1222222222 5999999999643
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.7e-07 Score=80.26 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=25.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
+..|+++.|.||||+|||||++++++...
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~~ 50 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNVI 50 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 34579999999999999999999987663
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.1e-07 Score=79.79 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+|++++|+||||+|||||+++++...
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHHHH
Confidence 45999999999999999999998544
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.2e-07 Score=74.31 Aligned_cols=113 Identities=20% Similarity=0.329 Sum_probs=74.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEeCCCCCC-H----HHHhhcccccCcceecCCCCHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHALD-P----SLAETIGVKTENLLLAQPDCGEQALS 126 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-----gg~vl~id~e~~~~-~----~~~~~ig~~~~~~~~~~~~~~e~~l~ 126 (366)
.+.++.|+|++|+|||+++.+++..+... ...++|++...... . .+...++..... ..+..++..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-----RQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-----TS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-----cCCHHHHHH
Confidence 56789999999999999999999988754 56678887654433 1 334445544332 557788888
Q ss_pred HHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecC
Q 017792 127 LVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 194 (366)
Q Consensus 127 ~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~ 194 (366)
.+...+......+++||.+..+. + +.+...|+.+ +...+++||++.+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~-----~------------~~~l~~l~~l---~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLF-----S------------DEFLEFLRSL---LNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHH-----T------------HHHHHHHHHH---TCSCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcC-----C------------HHHHHHHHHH---HhCCCCeEEEEECh
Confidence 88887777777899999998763 0 1222334333 35789999999875
|
|
| >PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-06 Score=83.35 Aligned_cols=169 Identities=16% Similarity=0.206 Sum_probs=101.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHH----hhccccc-------Ccce--------e
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLA----ETIGVKT-------ENLL--------L 115 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~----~~ig~~~-------~~~~--------~ 115 (366)
...|+..+|-|.||+|||||++.++..+... +.++|+++.-..+..+. .+-.+++ |+.+ .
T Consensus 7 ~~~G~TLLIKG~PGTGKTtfaLelL~~l~~~-~~v~YISTRVd~d~vy~~y~~~~~~i~~~~vlDatQd~~~~~~~~~vp 85 (484)
T PF07088_consen 7 QEPGQTLLIKGEPGTGKTTFALELLNSLKDH-GNVMYISTRVDQDTVYEMYPWIEESIDPTNVLDATQDPFELPLDKDVP 85 (484)
T ss_pred CCCCcEEEEecCCCCCceeeehhhHHHHhcc-CCeEEEEeccCHHHHHHhhhhhccccChhhhhhhccchhhccccccCc
Confidence 3579999999999999999999999988754 45799998744332111 1111111 1111 1
Q ss_pred cCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCC
Q 017792 116 AQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVR 195 (366)
Q Consensus 116 ~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~ 195 (366)
......+.+.+++.+.-.....-++++||..++.. .+..+.+..+ .+-.....|...+++.|+-+|+++...
T Consensus 86 ~~~l~~ds~~~f~~~i~~~~k~~iI~~DSWdaiie--yla~~~~~~e------d~e~l~~dLv~lard~g~~LIlVsEsa 157 (484)
T PF07088_consen 86 FERLDIDSFRDFVDKINEAGKKPIIAFDSWDAIIE--YLAEEHDEPE------DIETLTNDLVELARDMGINLILVSESA 157 (484)
T ss_pred ccccCHHHHHHHHHHhhhcccCcEEEEecHHHHHH--HhhhhhcCcH------HHHHHHHHHHHHHhhcCceEEEEEecC
Confidence 12234566666666543346778999999554431 1111111111 123445566666688899999998865
Q ss_pred cccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCC
Q 017792 196 AKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLA 253 (366)
Q Consensus 196 ~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~ 253 (366)
+. .| ++|++|-|+-|+-. ..++ -..++.+.+.|.|.-
T Consensus 158 ~~-------~~---------LdYivDGVVTL~v~----~der-GR~~R~L~LeKLRGV 194 (484)
T PF07088_consen 158 EN-------EP---------LDYIVDGVVTLQVK----NDER-GRTRRYLRLEKLRGV 194 (484)
T ss_pred CC-------Cc---------chheeeeEEEEEec----cccC-CceEEEEEehhhcCc
Confidence 43 12 99999999999422 1111 112347788888743
|
GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-08 Score=87.30 Aligned_cols=160 Identities=22% Similarity=0.266 Sum_probs=85.8
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCc------------ceecC
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTEN------------LLLAQ 117 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~------------~~~~~ 117 (366)
|-+..|+++-++||||+|||||+-.+++... ..|. +-+++..... .++++.-.|..|+ +.+.+
T Consensus 20 ~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGs-i~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~q 97 (248)
T COG4138 20 GEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGS-IQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQ 97 (248)
T ss_pred cccccceEEEEECCCCccHHHHHHHHhCCCC-CCce-EEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcC
Confidence 6788999999999999999999887777654 3454 4445433211 3455555554432 22333
Q ss_pred CC-CHHHHHHHHHHH-------------HhcCCceEEEEeccc-ccC----CCC--ccCCccchhhHHHHHHHHHHHHHH
Q 017792 118 PD-CGEQALSLVDTL-------------IRSGSVDVVVVDSVA-ALV----PKG--ELDGEMGDAHMAMQARLMSQALRK 176 (366)
Q Consensus 118 ~~-~~e~~l~~~~~~-------------~~~~~~~lvviDsl~-~l~----~~~--~l~~~~g~~~~~~~ar~l~~~L~~ 176 (366)
|. ++...++.+..+ ++.+.-+.|-+..+. ... |.. -+-+++-......+. ..|.+
T Consensus 98 P~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~----~aLdr 173 (248)
T COG4138 98 PDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQ----SALDR 173 (248)
T ss_pred chHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHH----HHHHH
Confidence 33 222333333221 122222222222211 111 111 111222222222222 24666
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+...+...|.+||+.+|.... --.-+|.+..++++.++..|.
T Consensus 174 ll~~~c~~G~~vims~HDLNh------------------TLrhA~~~wLL~rG~l~~~G~ 215 (248)
T COG4138 174 LLSALCQQGLAIVMSSHDLNH------------------TLRHAHRAWLLKRGKLLASGR 215 (248)
T ss_pred HHHHHHhCCcEEEEeccchhh------------------HHHHHHHHHHHhcCeEEeecc
Confidence 777777889999999997643 112467777888887777664
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.7e-07 Score=80.30 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.9
Q ss_pred CC-CEEEEEcCCCCcHHHHHHHHH
Q 017792 57 KG-RVVEIYGPEASGKTTLALHVI 79 (366)
Q Consensus 57 ~G-~ii~I~G~~GsGKTTL~~~l~ 79 (366)
+| +++.|.||||+|||||++.+.
T Consensus 26 ~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 26 ENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred CCceEEEEECCCCCChHHHHHHHH
Confidence 45 589999999999999999988
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.7e-07 Score=84.52 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
..|++++|+|+||||||||+..++.
T Consensus 26 ~~~~~~~i~G~NGsGKSTll~~i~~ 50 (213)
T cd03279 26 DNNGLFLICGPTGAGKSTILDAITY 50 (213)
T ss_pred CccCEEEEECCCCCCHHHHHHHhee
Confidence 4588999999999999999998874
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >TIGR01618 phage_P_loop phage nucleotide-binding protein | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.2e-06 Score=76.31 Aligned_cols=128 Identities=14% Similarity=0.109 Sum_probs=72.3
Q ss_pred CcCC-CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhccc-ccCcceecCCCCHHHHHHHHHHH
Q 017792 54 GLPK-GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGV-KTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 54 Gi~~-G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~-~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
-+++ ...+.|+|+||+||||+++.+. +..++++.+...... .|. ..+-..+-.+.+.+.+.+++..+
T Consensus 7 ~~~~~~~~~liyG~~G~GKtt~a~~~~-------~~~~~~~~d~~~~~l----~g~~~~~v~~~d~~~~~~~~~d~l~~~ 75 (220)
T TIGR01618 7 NIKRIPNMYLIYGKPGTGKTSTIKYLP-------GKTLVLSFDMSSKVL----IGDENVDIADHDDMPPIQAMVEFYVMQ 75 (220)
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHhcC-------CCCEEEeccccchhc----cCCCCCceeecCCCCCHHHHHHHHHHH
Confidence 3444 4679999999999999988772 345777776543211 111 00111122344566666666533
Q ss_pred H-hcCCceEEEEecccccCC-------CCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCc
Q 017792 132 I-RSGSVDVVVVDSVAALVP-------KGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRA 196 (366)
Q Consensus 132 ~-~~~~~~lvviDsl~~l~~-------~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~ 196 (366)
- ....++.||||++..+.. +..-++.+ +.+... .+...+..+...+...|.+||++.|...
T Consensus 76 ~~~~~~ydtVVIDsI~~l~~~~~~~~~r~~k~~~~-~~~~yg---~~~~~fl~~l~~L~~~g~nII~tAhe~~ 144 (220)
T TIGR01618 76 NIQAVKYDNIVIDNISALQNLWLENIGRAAKNGQP-ELQHYQ---KLDLWFLDLLTVLKESNKNIYATAWELT 144 (220)
T ss_pred HhccccCCEEEEecHHHHHHHHHHHHhhhcCCCCc-ccccHH---HHHHHHHHHHHHHHhCCCcEEEEEeecc
Confidence 2 134589999999987752 01111111 111111 1223444455555668999999999854
|
This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown. |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.6e-07 Score=79.80 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+| +++|+||||+|||||+..+...+
T Consensus 22 ~g-~~~i~G~NGsGKTTLl~ai~~~l 46 (204)
T cd03240 22 SP-LTLIVGQNGAGKTTIIEALKYAL 46 (204)
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 44 99999999999999998886433
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.2e-06 Score=71.56 Aligned_cols=121 Identities=15% Similarity=0.095 Sum_probs=62.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc--
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS-- 134 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~-- 134 (366)
.+.+++|+||||+||||++..+...+....+....-+........-+..+-+.+....+. ....+.+.+...+...
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS--~G~~~~~~la~~L~~~~~ 97 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLS--GGEKELSALALILALASL 97 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeecc--ccHHHHHHHHHHHHhcCC
Confidence 347999999999999999999877665543322221000000000000000000000011 1123334444444332
Q ss_pred CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCc
Q 017792 135 GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRA 196 (366)
Q Consensus 135 ~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~ 196 (366)
..+.++++|.+..-... ...+.+...+.++. .+ ++++|+++|..+
T Consensus 98 ~~~~llllDEp~~gld~-------------~~~~~l~~~l~~~~---~~-~~~vii~TH~~~ 142 (162)
T cd03227 98 KPRPLYILDEIDRGLDP-------------RDGQALAEAILEHL---VK-GAQVIVITHLPE 142 (162)
T ss_pred CCCCEEEEeCCCCCCCH-------------HHHHHHHHHHHHHH---hc-CCEEEEEcCCHH
Confidence 26899999998776520 11233444444443 34 899999999765
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.3e-06 Score=66.59 Aligned_cols=113 Identities=22% Similarity=0.255 Sum_probs=64.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEE
Q 017792 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVV 140 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lv 140 (366)
+.|+||||+||||++..++..+ +-.++.++.....+. ....+...+...+........+.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~vl 62 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPCVL 62 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccccc---------------cccccccccccccccccccccceee
Confidence 5799999999999999998886 345667765321110 1111222333333332222237999
Q ss_pred EEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhh--cCcEEEEEecCCccc
Q 017792 141 VVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL--SQTILIFINQVRAKL 198 (366)
Q Consensus 141 viDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~--~~~tVI~i~h~~~~~ 198 (366)
++|.+..+.+.. ..... ...+.+...|..+...... .++.||++++..+.+
T Consensus 63 ~iDe~d~l~~~~--~~~~~-----~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i 115 (132)
T PF00004_consen 63 FIDEIDKLFPKS--QPSSS-----SFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKI 115 (132)
T ss_dssp EEETGGGTSHHC--STSSS-----HHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGS
T ss_pred eeccchhccccc--ccccc-----cccccccceeeecccccccccccceeEEeeCChhhC
Confidence 999999998533 11111 1222333344444443333 458999998876553
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.3e-05 Score=66.07 Aligned_cols=79 Identities=28% Similarity=0.428 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHH-HhhcccccCcceecCCCCHHHHHHHHHHHHhcC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSL-AETIGVKTENLLLAQPDCGEQALSLVDTLIRSG 135 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~-~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~ 135 (366)
.+..+.|+||+|+|||||+..++..+...+..+++++......... ....... ............
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~ 83 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF--------------LVRLLFELAEKA 83 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh--------------hHhHHHHhhccC
Confidence 5678999999999999999999999876677788887654333211 1111100 111111222334
Q ss_pred CceEEEEecccccC
Q 017792 136 SVDVVVVDSVAALV 149 (366)
Q Consensus 136 ~~~lvviDsl~~l~ 149 (366)
...++++|.+..+.
T Consensus 84 ~~~~lilDe~~~~~ 97 (151)
T cd00009 84 KPGVLFIDEIDSLS 97 (151)
T ss_pred CCeEEEEeChhhhh
Confidence 67899999998773
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.5e-07 Score=81.19 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVI 79 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~ 79 (366)
++++|+|||||||||++.+++
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 799999999999999999886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.5e-06 Score=85.93 Aligned_cols=74 Identities=23% Similarity=0.228 Sum_probs=48.5
Q ss_pred HHHhcCCCceEeccCCCCC--CC---CCcccCChH---HHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 017792 15 ITSSFGKGSIMWLGRSVTP--RH---VPVVSTGSF---ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG 86 (366)
Q Consensus 15 i~~~~~~~~~~~~~~~~~~--~~---~~~i~TG~~---~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g 86 (366)
+++.++......+-..... .+ +.-+++|.+ .|=.-|. =|+..++.+.++||||+|||||++.+++.+.+..
T Consensus 366 ~ek~~~~k~l~~~f~~vg~~p~pvi~~~nv~F~y~~~~~iy~~l~-fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~ 444 (614)
T KOG0927|consen 366 TEKVVGEKVLSFRFPEVGKIPPPVIMVQNVSFGYSDNPMIYKKLN-FGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTI 444 (614)
T ss_pred cccccCCceEEEEcccccCCCCCeEEEeccccCCCCcchhhhhhh-cccCcccceeEecCCCCchhhhHHHHhhcccccc
Confidence 5566666554443332222 11 234455544 2222222 3799999999999999999999999999999876
Q ss_pred CeE
Q 017792 87 GYC 89 (366)
Q Consensus 87 g~v 89 (366)
|.|
T Consensus 445 G~v 447 (614)
T KOG0927|consen 445 GMV 447 (614)
T ss_pred ccc
Confidence 654
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.1e-06 Score=83.91 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=30.0
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCe
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY 88 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~ 88 (366)
.+++|+-+.|.|+||||||||.+.+++.++-..|.
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~ 449 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGLWPWGSGR 449 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCc
Confidence 57899999999999999999999999887644443
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.1e-05 Score=71.40 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
.++.|+||||||||||+.+++..+.
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~ 47 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLG 47 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4999999999999999999988775
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=6e-06 Score=89.49 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=53.6
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC---eEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG---YCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALS 126 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg---~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~ 126 (366)
|-+.||.+++|.|++|+|||||+..+++... +| +-+.+++-.......++..||+-|+-......|++|-+.
T Consensus 812 G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t--~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~ 886 (1391)
T KOG0065|consen 812 GAFKPGVLTALMGESGAGKTTLLDVLAGRKT--GGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLR 886 (1391)
T ss_pred eEecCCceeehhcCCCCchHHHHHHHhcCcc--cceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHH
Confidence 5789999999999999999999988876542 22 225666654444678899999988766666666665543
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.9e-05 Score=69.11 Aligned_cols=88 Identities=22% Similarity=0.281 Sum_probs=57.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHHHH-HHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALS-LVDTL 131 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~l~-~~~~~ 131 (366)
.++.++||+|+||||.+-.++..+...+.+|.+++.+...- +.+++.+++.+-... ......+++. .+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~--~~~~~~~~~~~~l~~- 78 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVAR--TESDPAEIAREALEK- 78 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESS--TTSCHHHHHHHHHHH-
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhh--cchhhHHHHHHHHHH-
Confidence 47899999999999999999999987788888888764332 245667776532211 1222334333 3333
Q ss_pred HhcCCceEEEEecccccC
Q 017792 132 IRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 132 ~~~~~~~lvviDsl~~l~ 149 (366)
....+.++|+||......
T Consensus 79 ~~~~~~D~vlIDT~Gr~~ 96 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAGRSP 96 (196)
T ss_dssp HHHTTSSEEEEEE-SSSS
T ss_pred HhhcCCCEEEEecCCcch
Confidence 344568999999976543
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=98.17 E-value=5e-06 Score=76.66 Aligned_cols=102 Identities=21% Similarity=0.292 Sum_probs=60.4
Q ss_pred HHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC--Ce-EEEEeCCCCCC-HHHHhhcc-----cccCccee
Q 017792 45 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG--GY-CVFIDAEHALD-PSLAETIG-----VKTENLLL 115 (366)
Q Consensus 45 ~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g--g~-vl~id~e~~~~-~~~~~~ig-----~~~~~~~~ 115 (366)
.+|.++. +.+|+.++|+|++|+|||||++.++..+.... .. ++++..+...+ ..+.+.+. -..+....
T Consensus 6 ~id~~~~---i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~ 82 (249)
T cd01128 6 VVDLFAP---IGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPE 82 (249)
T ss_pred heeeecc---cCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHH
Confidence 4566666 67999999999999999999999998876542 23 22334443344 23333331 01111000
Q ss_pred cCCCCHHHHHHHHHHHHhcCCceEEEEecccccC
Q 017792 116 AQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 116 ~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
.+..........+..+...+..-++++|++..+.
T Consensus 83 ~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 83 RHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhh
Confidence 0011123344445555555677899999998764
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.2e-06 Score=74.08 Aligned_cols=79 Identities=28% Similarity=0.434 Sum_probs=49.9
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
-+..+.-+.|+|++|+|||.|+..++..+...+..|+|++..+ +...+.-. ....+.++.+..+.
T Consensus 43 ~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~-----L~~~l~~~------~~~~~~~~~~~~l~---- 107 (178)
T PF01695_consen 43 FIENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASD-----LLDELKQS------RSDGSYEELLKRLK---- 107 (178)
T ss_dssp S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHH-----HHHHHHCC------HCCTTHCHHHHHHH----
T ss_pred CcccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCc-----eecccccc------ccccchhhhcCccc----
Confidence 4556788999999999999999999999988888999987533 22222111 11122334333322
Q ss_pred cCCceEEEEecccccC
Q 017792 134 SGSVDVVVVDSVAALV 149 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~ 149 (366)
.++++|||.+....
T Consensus 108 --~~dlLilDDlG~~~ 121 (178)
T PF01695_consen 108 --RVDLLILDDLGYEP 121 (178)
T ss_dssp --TSSCEEEETCTSS-
T ss_pred --cccEecccccceee
Confidence 58999999997543
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.2e-06 Score=73.59 Aligned_cols=44 Identities=27% Similarity=0.320 Sum_probs=33.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD 99 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~ 99 (366)
+|.|+-+.++|.||+|||||++.+.+.-...+ .++-+.+...+.
T Consensus 37 lp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~-~~v~VlgrsaFh 80 (291)
T KOG2355|consen 37 LPAGSRCLLVGANGAGKTTLLKILSGKHMVGG-GVVQVLGRSAFH 80 (291)
T ss_pred cCCCceEEEEecCCCchhhhHHHhcCcccccC-CeEEEcCcCccc
Confidence 88999999999999999999988876554434 345555554443
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.1e-06 Score=86.72 Aligned_cols=110 Identities=18% Similarity=0.210 Sum_probs=68.8
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HH----HHhh
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PS----LAET 105 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~----~~~~ 105 (366)
.+.+.||+..||.++. +.+|+.++|+|++|+|||||+.+++....+..+ ++++.+|...+ .. +.+.
T Consensus 146 ~~~l~TGi~aID~L~~---I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~g-vv~liGergrev~e~~~~~l~~~r~rt 221 (450)
T PRK06002 146 ETGLRTGVRVIDIFTP---LCAGQRIGIFAGSGVGKSTLLAMLARADAFDTV-VIALVGERGREVREFLEDTLADNLKKA 221 (450)
T ss_pred eEEcCCCcEEeeeece---ecCCcEEEEECCCCCCHHHHHHHHhCCCCCCee-eeeecccCCccHHHHhHHHHHHhhCCe
Confidence 3567899999998865 999999999999999999999888776655444 44444333222 11 1223
Q ss_pred cccccCcc--eecCCCCHHHHHHHHHHHHhcCCceEEEEecccccC
Q 017792 106 IGVKTENL--LLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 106 ig~~~~~~--~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
+++.+|.- ...+.....-.+.+++.+...+.--++++||++.+.
T Consensus 222 I~vV~qsd~~~~~r~~~~~~a~~iAEyfrd~G~~Vll~~DslTr~A 267 (450)
T PRK06002 222 VAVVATSDESPMMRRLAPLTATAIAEYFRDRGENVLLIVDSVTRFA 267 (450)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchHHHH
Confidence 45544311 111111223334445555556667788899997654
|
|
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.9e-05 Score=78.54 Aligned_cols=123 Identities=22% Similarity=0.277 Sum_probs=69.1
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
|+.++.-+.|+||||+|||+|++.++..+. ...+.+....... ..+| . ....+..+-....
T Consensus 213 gi~~p~gVLL~GPPGTGKT~LAraIA~el~---~~fi~V~~seL~~----k~~G-----------e-~~~~vr~lF~~A~ 273 (438)
T PTZ00361 213 GIKPPKGVILYGPPGTGKTLLAKAVANETS---ATFLRVVGSELIQ----KYLG-----------D-GPKLVRELFRVAE 273 (438)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHhhC---CCEEEEecchhhh----hhcc-----------h-HHHHHHHHHHHHH
Confidence 677778899999999999999999988763 2333343211110 0111 0 1112222222233
Q ss_pred cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccc
Q 017792 134 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKL 198 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~ 198 (366)
...+.+++||.+..+.....-....++. ...+.+...|..+-......++.||+++|..+.+
T Consensus 274 ~~~P~ILfIDEID~l~~kR~~~~sgg~~---e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 274 ENAPSIVFIDEIDAIGTKRYDATSGGEK---EIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hCCCcEEeHHHHHHHhccCCCCCCcccH---HHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 4567899999998886432211111222 1234445555555433345688899998866543
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.4e-05 Score=70.07 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=23.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
.+.++++.|.||||+|||||+++++..
T Consensus 27 ~~~~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 27 RGKSRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred ecCCeEEEEECCCCCChHHHHHHHHHH
Confidence 457899999999999999999988754
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.4e-05 Score=78.76 Aligned_cols=125 Identities=21% Similarity=0.311 Sum_probs=68.0
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
-|++++.-+.|+||||+|||+|++.++..+. ...+.+.... .....+|. .+..+..+-...
T Consensus 174 ~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~---~~fi~i~~s~----l~~k~~ge------------~~~~lr~lf~~A 234 (398)
T PTZ00454 174 IGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT---ATFIRVVGSE----FVQKYLGE------------GPRMVRDVFRLA 234 (398)
T ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHhcC---CCEEEEehHH----HHHHhcch------------hHHHHHHHHHHH
Confidence 4688888899999999999999999987653 2233332210 01111111 111222222233
Q ss_pred hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 133 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
....+.++++|.+..+.+.. .+...+.. ....+.+...|..+-..-...++.||+++|..+.++
T Consensus 235 ~~~~P~ILfIDEID~i~~~r-~~~~~~~d--~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LD 298 (398)
T PTZ00454 235 RENAPSIIFIDEVDSIATKR-FDAQTGAD--REVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 298 (398)
T ss_pred HhcCCeEEEEECHhhhcccc-ccccCCcc--HHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCC
Confidence 44578899999999887422 11111110 112244444444443222335788899888665543
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.5e-06 Score=81.38 Aligned_cols=110 Identities=17% Similarity=0.246 Sum_probs=67.1
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HH-HHhhcccc-cCc
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PS-LAETIGVK-TEN 112 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~-~~~~ig~~-~~~ 112 (366)
.+.+.||+..||.++. +.+|+.+.|+|+||+|||||+.++++...+..+ ++..-++...+ .. ....++-. ..+
T Consensus 144 ~e~l~TGi~~iD~l~~---i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~-vi~~iG~r~~ev~~~~~~~~~~~~l~~ 219 (440)
T TIGR01026 144 REILSTGVRSIDGLLT---VGKGQRIGIFAGSGVGKSTLLGMIARNTEADVN-VIALIGERGREVREFIEHDLGEEGLKR 219 (440)
T ss_pred cccccceeeeeeeccc---cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEE-EEEEEeecchHHHHHHHHHhcccccce
Confidence 4578999999999987 899999999999999999999888877654433 33333333222 11 11222210 112
Q ss_pred c-eecC---CCCHH------HHHHHHHHHHhcCCceEEEEecccccC
Q 017792 113 L-LLAQ---PDCGE------QALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 113 ~-~~~~---~~~~e------~~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
. .++. ..... -.+...+.+...+.--++++||++.+.
T Consensus 220 tvvv~~~~d~~p~~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~A 266 (440)
T TIGR01026 220 SVVVVATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFA 266 (440)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHH
Confidence 1 1111 11122 223344445556667788999998654
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.3e-06 Score=84.50 Aligned_cols=110 Identities=16% Similarity=0.109 Sum_probs=70.4
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-----HH-H------H
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-----PS-L------A 103 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-----~~-~------~ 103 (366)
-+.+.||+..||.++. +.+|+.++|+|+||+|||||+.++++...+... ++-..++...+ .. + .
T Consensus 136 ~~~l~TGi~aID~ll~---I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~-vig~IGerg~ev~ef~~~~l~~~gl~r 211 (434)
T PRK07196 136 DTPLDVGVNAINGLLT---IGKGQRVGLMAGSGVGKSVLLGMITRYTQADVV-VVGLIGERGREVKEFIEHSLQAAGMAK 211 (434)
T ss_pred ccccccceeeccceEe---EecceEEEEECCCCCCccHHHHHHhcccCCCeE-EEEEEeeecHHHHHHHHHHhhhcccce
Confidence 5689999999999987 999999999999999999999888876644311 11111221111 01 1 1
Q ss_pred hhcccccCcceecCCCCHHHHHHHHHHHH-hcCCceEEEEecccccC
Q 017792 104 ETIGVKTENLLLAQPDCGEQALSLVDTLI-RSGSVDVVVVDSVAALV 149 (366)
Q Consensus 104 ~~ig~~~~~~~~~~~~~~e~~l~~~~~~~-~~~~~~lvviDsl~~l~ 149 (366)
..+++.+++.......++.+....+..+. ..+.--++++||++.+.
T Consensus 212 svvv~~~~d~s~~~rl~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a 258 (434)
T PRK07196 212 SVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYA 258 (434)
T ss_pred EEEEEecCCCChhhhHHHHHHHHHHHHHhhhccCCEEEeecchhHHH
Confidence 12455555554444445555554444443 34556678899997664
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.8e-05 Score=70.49 Aligned_cols=34 Identities=26% Similarity=0.271 Sum_probs=28.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHH-HHhhcCCe
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIA-EAQRQGGY 88 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~-~~~~~gg~ 88 (366)
+.+|+++.|.||||+|||||++.++. .+..+.|.
T Consensus 28 ~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~ 62 (222)
T cd03287 28 AEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGS 62 (222)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 56789999999999999999999998 44555554
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.2e-05 Score=74.27 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
..+++|+||||||||||+..++..+..
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~ 51 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGI 51 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcc
Confidence 348999999999999999999888754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.7e-05 Score=74.42 Aligned_cols=90 Identities=20% Similarity=0.282 Sum_probs=57.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhccc--ccCcceecCCCCHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGV--KTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~--~~~~~~~~~~~~~e~~l~~ 127 (366)
++|.+++|+||||+||||++..++..+.+.+++|++++.+-... ..++.+.++ .++.. .........+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~---~~dpa~~v~~~ 188 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKE---GADPASVAFDA 188 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCC---CCCHHHHHHHH
Confidence 35889999999999999999999999998888888887653211 133444443 22211 11111222222
Q ss_pred HHHHHhcCCceEEEEecccccC
Q 017792 128 VDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 128 ~~~~~~~~~~~lvviDsl~~l~ 149 (366)
+... .....++|+||....+.
T Consensus 189 l~~~-~~~~~D~ViIDTaGr~~ 209 (318)
T PRK10416 189 IQAA-KARGIDVLIIDTAGRLH 209 (318)
T ss_pred HHHH-HhCCCCEEEEeCCCCCc
Confidence 2222 23568999999987765
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.1e-05 Score=77.90 Aligned_cols=125 Identities=19% Similarity=0.218 Sum_probs=77.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCccee---------cCCCCHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLL---------AQPDCGEQAL 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~---------~~~~~~e~~l 125 (366)
+.+|.-..|.||||||||.|.+.+.+.+.-.+| .+++-.+. ++-|.||++++ .-|++.++..
T Consensus 505 i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g-~L~~P~~~--------~mFYIPQRPYms~gtlRDQIIYPdS~e~~~ 575 (728)
T KOG0064|consen 505 IEPGMHLLITGPNGCGKSSLFRILGGLWPVYNG-LLSIPRPN--------NIFYIPQRPYMSGGTLRDQIIYPDSSEQMK 575 (728)
T ss_pred ecCCceEEEECCCCccHHHHHHHHhccCcccCC-eeecCCCc--------ceEeccCCCccCcCcccceeecCCcHHHHH
Confidence 568899999999999999998877777665555 45543321 25566666643 3456665542
Q ss_pred H----------HH-----HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-----------------
Q 017792 126 S----------LV-----DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 126 ~----------~~-----~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
. ++ ..+++... . +|.+..+. ..+++ |++|+...||.+-..
T Consensus 576 ~kg~~d~dL~~iL~~v~L~~i~qr~~-g---~da~~dWk--d~Lsg--GekQR~~mARm~yHrPkyalLDEcTsAvsidv 647 (728)
T KOG0064|consen 576 RKGYTDQDLEAILDIVHLEHILQREG-G---WDAVRDWK--DVLSG--GEKQRMGMARMFYHRPKYALLDECTSAVSIDV 647 (728)
T ss_pred hcCCCHHHHHHHHHHhhHHHHHHhcc-C---hhhhccHH--hhccc--hHHHHHHHHHHHhcCcchhhhhhhhcccccch
Confidence 2 11 11222111 1 45555543 45555 899999888876432
Q ss_pred HHHHHHHhhhcCcEEEEEecCCc
Q 017792 174 LRKLSHSLSLSQTILIFINQVRA 196 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~ 196 (366)
=.++-..++..|++.|-++|..+
T Consensus 648 E~~i~~~ak~~gi~llsithrps 670 (728)
T KOG0064|consen 648 EGKIFQAAKDAGISLLSITHRPS 670 (728)
T ss_pred HHHHHHHHHhcCceEEEeecCcc
Confidence 12333444678999999999654
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.5e-05 Score=79.60 Aligned_cols=152 Identities=19% Similarity=0.297 Sum_probs=97.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--CH--HHHhhcccccCcc---eecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP--SLAETIGVKTENL---LLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~~--~~~~~ig~~~~~~---~~~~~~~~e~~l~~ 127 (366)
+.+|+|++|+|--|+|+|-|++.+.+.-...+|. ++++++... ++ ....-++|.+++- -++...++.+++..
T Consensus 282 vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~-i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l 360 (500)
T COG1129 282 VRAGEILGIAGLVGAGRTELARALFGARPASSGE-ILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITL 360 (500)
T ss_pred EeCCcEEEEeccccCCHHHHHHHHhCCCcCCCce-EEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheeh
Confidence 6799999999999999999999999955555564 788877432 22 3444566666532 12233333333322
Q ss_pred H--------------------HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------
Q 017792 128 V--------------------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------- 173 (366)
Q Consensus 128 ~--------------------~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------- 173 (366)
. ..+++..+++ ..+...+-..++| |.+|+...+|-+...
T Consensus 361 ~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik-----~~s~~~~v~~LSG--GNQQKVvlarwL~~~p~vLilDEPTRGID 433 (500)
T COG1129 361 ASLRRFSRRGLIDRRKERALAERYIRRLRIK-----TPSPEQPIGTLSG--GNQQKVVLARWLATDPKVLILDEPTRGID 433 (500)
T ss_pred HhhhhhccccccChHHHHHHHHHHHHhcCcc-----cCCccchhhcCCc--hhhhhHHHHHHHhcCCCEEEECCCCcCcc
Confidence 2 1111111111 1111122344555 788888888876654
Q ss_pred ------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 174 ------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 174 ------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
++++...+.+.|.+||+++-...+ +-.+||+++.|+.+++.
T Consensus 434 VGAK~eIy~li~~lA~~G~ail~iSSElpE------------------ll~~~DRIlVm~~Gri~ 480 (500)
T COG1129 434 VGAKAEIYRLIRELAAEGKAILMISSELPE------------------LLGLSDRILVMREGRIV 480 (500)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEEeCChHH------------------HHhhCCEEEEEECCEEE
Confidence 888888888899999999887665 66689999999977543
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.6e-05 Score=74.49 Aligned_cols=90 Identities=19% Similarity=0.241 Sum_probs=63.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H----HHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P----SLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~----~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+.+|+++.|+||+|+||||++..++..+...+.+|.+++.+.... . .+++.+++.+ ....+..++...+
T Consensus 203 ~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv-----~~~~dp~dL~~al 277 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL-----IVATSPAELEEAV 277 (407)
T ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE-----EecCCHHHHHHHH
Confidence 457899999999999999999999988877788899998864322 1 2334444321 1223566666656
Q ss_pred HHHHhcCCceEEEEecccccC
Q 017792 129 DTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 129 ~~~~~~~~~~lvviDsl~~l~ 149 (366)
..+......++|+||......
T Consensus 278 ~~l~~~~~~D~VLIDTAGr~~ 298 (407)
T PRK12726 278 QYMTYVNCVDHILIDTVGRNY 298 (407)
T ss_pred HHHHhcCCCCEEEEECCCCCc
Confidence 555433568999999987654
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.5e-05 Score=70.45 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
++++.|.||||+|||||++.++..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 478999999999999999999854
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.2e-05 Score=69.30 Aligned_cols=30 Identities=30% Similarity=0.272 Sum_probs=25.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
...|+++.|.||||+|||||+++++.....
T Consensus 26 ~~~~~~~~l~G~n~~GKstll~~i~~~~~l 55 (204)
T cd03282 26 RGSSRFHIITGPNMSGKSTYLKQIALLAIM 55 (204)
T ss_pred eCCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999988766543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.8e-05 Score=70.27 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++++|.||||+|||||++.++...
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHH
Confidence 899999999999999999987544
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00013 Score=71.02 Aligned_cols=87 Identities=17% Similarity=0.232 Sum_probs=58.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
+.+++|+||+|+||||++..++..+...+.++.+++.+...- ..+++.+++. +....+..++...+..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgip-----v~v~~d~~~L~~aL~~l 315 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFE-----VIAVRDEAAMTRALTYF 315 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCc-----EEecCCHHHHHHHHHHH
Confidence 469999999999999999999998887777888888764321 1223333422 22223455555555544
Q ss_pred HhcCCceEEEEecccccC
Q 017792 132 IRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 132 ~~~~~~~lvviDsl~~l~ 149 (366)
....+.++++||......
T Consensus 316 k~~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 316 KEEARVDYILIDTAGKNY 333 (436)
T ss_pred HhccCCCEEEEeCccccC
Confidence 333358999999887654
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00012 Score=63.59 Aligned_cols=87 Identities=23% Similarity=0.274 Sum_probs=53.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHH------HHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS------LAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~------~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
++.+.|++|+||||++..++..+...+.++++++.+...... +++..++..-. ...+....+++........
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFE--EGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEe--cCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999888878889999976432211 12233322111 1122334444422222233
Q ss_pred cCCceEEEEeccccc
Q 017792 134 SGSVDVVVVDSVAAL 148 (366)
Q Consensus 134 ~~~~~lvviDsl~~l 148 (366)
....+++++|.....
T Consensus 80 ~~~~d~viiDt~g~~ 94 (173)
T cd03115 80 EENFDVVIVDTAGRL 94 (173)
T ss_pred hCCCCEEEEECcccc
Confidence 456788999986654
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.7e-05 Score=85.58 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=23.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVI 79 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~ 79 (366)
||+|++++|+|++|||||||+..+.
T Consensus 632 Ip~GeivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 632 IPLGKFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred EeCCCEEEEEcCCCCCHHHHHHHHH
Confidence 6899999999999999999998875
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.4e-06 Score=78.99 Aligned_cols=105 Identities=19% Similarity=0.270 Sum_probs=62.8
Q ss_pred ChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC---CeEEEEeCCCCCC-HHHHhhc-cc----ccCc
Q 017792 42 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG---GYCVFIDAEHALD-PSLAETI-GV----KTEN 112 (366)
Q Consensus 42 G~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g---g~vl~id~e~~~~-~~~~~~i-g~----~~~~ 112 (366)
|+..+|-.+. +.+|+.++|+||+|+|||||+..++..+.... ..++++..+...+ ..+.+.+ +. .++.
T Consensus 155 ~~R~id~~~p---ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~ 231 (415)
T TIGR00767 155 STRVLDLFAP---IGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDE 231 (415)
T ss_pred ceeeeeeEEE---eCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCC
Confidence 3444577776 77999999999999999999999988876541 1233444443344 2333333 11 1111
Q ss_pred ceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccC
Q 017792 113 LLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 113 ~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
....+..-.+.+++.+..+...+.--++++|+++.+.
T Consensus 232 p~~~~~~va~~v~e~Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 232 PASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEChhHHH
Confidence 0000001123445555666666777799999998764
|
Members of this family differ in the specificity of RNA binding. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.00 E-value=5e-05 Score=67.66 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=27.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEe
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFID 93 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id 93 (366)
++.|+||+||||||++..++..+... ++.++.+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e 37 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE 37 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc
Confidence 78999999999999999988888754 44544443
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=97.99 E-value=4e-05 Score=72.19 Aligned_cols=82 Identities=22% Similarity=0.329 Sum_probs=55.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-C-CeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ-G-GYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-g-g~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+.+.++.|+||+|+||||++..++..+... + ..|.+++.+.... ..+++.+++.+ ....+..++...
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~-----~~~~~~~~l~~~ 266 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPV-----KVARDPKELRKA 266 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCce-----eccCCHHHHHHH
Confidence 467899999999999999999999988765 4 6889998775321 12344445432 112234455555
Q ss_pred HHHHHhcCCceEEEEecc
Q 017792 128 VDTLIRSGSVDVVVVDSV 145 (366)
Q Consensus 128 ~~~~~~~~~~~lvviDsl 145 (366)
+..+ ...++|+||..
T Consensus 267 l~~~---~~~d~vliDt~ 281 (282)
T TIGR03499 267 LDRL---RDKDLILIDTA 281 (282)
T ss_pred HHHc---cCCCEEEEeCC
Confidence 5443 34799999974
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.9e-05 Score=67.60 Aligned_cols=23 Identities=39% Similarity=0.403 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++.|.||||+|||||+++++...
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~ 23 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIV 23 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH
Confidence 36799999999999999998433
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00017 Score=67.54 Aligned_cols=90 Identities=20% Similarity=0.282 Sum_probs=58.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCH-HHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCG-EQALSLVD 129 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~-e~~l~~~~ 129 (366)
++.++.++|++|+||||++..++..+...+.+|.+++.+.... ..|+++.++..- ....+... ......+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~--~~~~~~dp~~~~~~~l~ 148 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVI--KQKEGADPAAVAFDAIQ 148 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEE--eCCCCCCHHHHHHHHHH
Confidence 4679999999999999999999999888888899998764211 134555553210 00111122 22223333
Q ss_pred HHHhcCCceEEEEecccccC
Q 017792 130 TLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 130 ~~~~~~~~~lvviDsl~~l~ 149 (366)
.. ...+.++++||....+.
T Consensus 149 ~~-~~~~~D~ViIDT~G~~~ 167 (272)
T TIGR00064 149 KA-KARNIDVVLIDTAGRLQ 167 (272)
T ss_pred HH-HHCCCCEEEEeCCCCCc
Confidence 32 23568999999987664
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.3e-05 Score=70.73 Aligned_cols=87 Identities=20% Similarity=0.125 Sum_probs=50.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccC--cceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTE--NLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~--~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+..|+.++|+||+|||||||++.++..+.+..+ ++.+.............+++..+ ........+..+++....
T Consensus 22 v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~-~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--- 97 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLLNALLAFIPPDER-IITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSAL--- 97 (186)
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCC-EEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHh---
Confidence 567999999999999999999999988775544 45553221111111112222221 111222334555544332
Q ss_pred hcCCceEEEEeccc
Q 017792 133 RSGSVDVVVVDSVA 146 (366)
Q Consensus 133 ~~~~~~lvviDsl~ 146 (366)
...++.+++..+.
T Consensus 98 -R~~pd~i~igEir 110 (186)
T cd01130 98 -RMRPDRIIVGEVR 110 (186)
T ss_pred -ccCCCEEEEEccC
Confidence 2468888887774
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.6e-05 Score=63.89 Aligned_cols=122 Identities=19% Similarity=0.268 Sum_probs=62.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCC------eEEEEeCCCCCCHHHHhhcccccCcceec-CCCCHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGG------YCVFIDAEHALDPSLAETIGVKTENLLLA-QPDCGEQALSLVDTL 131 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg------~vl~id~e~~~~~~~~~~ig~~~~~~~~~-~~~~~e~~l~~~~~~ 131 (366)
+++.|.|++|+||||++..++..+..... -++|+.............+ .+.... ..............+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~l~~~~~~~~~~~~~~~~~~ 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSL----ADLLFDQLPESIAPIEELLQEL 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchH----HHHHHHhhccchhhhHHHHHHH
Confidence 47899999999999999999988876531 2344544433221111011 000000 000111111123333
Q ss_pred HhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecC
Q 017792 132 IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 194 (366)
Q Consensus 132 ~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~ 194 (366)
......-++++|.+..+...... .....+...|..+.....-.++.+++++-.
T Consensus 77 ~~~~~~~llilDglDE~~~~~~~----------~~~~~~~~~l~~l~~~~~~~~~~liit~r~ 129 (166)
T PF05729_consen 77 LEKNKRVLLILDGLDELEEQDQS----------QERQRLLDLLSQLLPQALPPGVKLIITSRP 129 (166)
T ss_pred HHcCCceEEEEechHhcccchhh----------hHHHHHHHHHHHHhhhccCCCCeEEEEEcC
Confidence 44556678999999888731111 111223344555554322347788887653
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=4e-05 Score=71.28 Aligned_cols=41 Identities=32% Similarity=0.430 Sum_probs=35.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
++.|+.+.|+||+|+|||+|+..++..+...|..|.|++..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~ 139 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAA 139 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHH
Confidence 77899999999999999999999988877778788888743
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00019 Score=67.25 Aligned_cols=134 Identities=19% Similarity=0.156 Sum_probs=90.9
Q ss_pred cCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC------CeEEEEeCCCCCCH-----HHHhhccc
Q 017792 40 STGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG------GYCVFIDAEHALDP-----SLAETIGV 108 (366)
Q Consensus 40 ~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g------g~vl~id~e~~~~~-----~~~~~ig~ 108 (366)
..-+..|..+|..-.-.+=-...|+|+++.|||+++..+.....+.. -+|+++......+. .+...+|.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 34456666777522222223589999999999999999998765431 25888887655552 34556666
Q ss_pred ccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEE
Q 017792 109 KTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTIL 188 (366)
Q Consensus 109 ~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tV 188 (366)
... ...+..+....+..+++..+++++|||.+..+.. |.. .+.|.+...|+.|. ++..+++
T Consensus 123 P~~-----~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa--------Gs~---~~qr~~Ln~LK~L~---NeL~ipi 183 (302)
T PF05621_consen 123 PYR-----PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA--------GSY---RKQREFLNALKFLG---NELQIPI 183 (302)
T ss_pred ccC-----CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc--------ccH---HHHHHHHHHHHHHh---hccCCCe
Confidence 542 3345566666666777888999999999988762 221 34577778888887 4568999
Q ss_pred EEEe
Q 017792 189 IFIN 192 (366)
Q Consensus 189 I~i~ 192 (366)
|++.
T Consensus 184 V~vG 187 (302)
T PF05621_consen 184 VGVG 187 (302)
T ss_pred EEec
Confidence 9873
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.7e-05 Score=76.19 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=30.9
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCe
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY 88 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~ 88 (366)
-++.|+-+.|+||||||||.|++.+++++...+|.
T Consensus 457 ~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~ 491 (659)
T KOG0060|consen 457 EVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGK 491 (659)
T ss_pred EecCCCeEEEECCCCCchhHHHHHHhcccccCCCe
Confidence 58999999999999999999999988888766664
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.6e-05 Score=72.70 Aligned_cols=78 Identities=23% Similarity=0.370 Sum_probs=52.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
+..++-+.|+||+|+|||.|+..++..+...|..|+|++..+ +...+.... ...+.++.+..+
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~-----L~~~l~~a~------~~~~~~~~l~~l------ 165 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTD-----LVQKLQVAR------RELQLESAIAKL------ 165 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHH-----HHHHHHHHH------hCCcHHHHHHHH------
Confidence 456778999999999999999999998888888899987532 222221100 112233333322
Q ss_pred CCceEEEEecccccC
Q 017792 135 GSVDVVVVDSVAALV 149 (366)
Q Consensus 135 ~~~~lvviDsl~~l~ 149 (366)
..++++|||.+....
T Consensus 166 ~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 166 DKFDLLILDDLAYVT 180 (269)
T ss_pred hcCCEEEEecccccc
Confidence 257999999997654
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00015 Score=69.64 Aligned_cols=89 Identities=19% Similarity=0.234 Sum_probs=56.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHH-HHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQA-LSLVDT 130 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~-l~~~~~ 130 (366)
+.++.++|+||+||||++..++..+...+..|+++++..... ..++..+|+..-.. ........+ ...+..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~--~~g~dp~~v~~~ai~~ 217 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKH--KYGADPAAVAYDAIEH 217 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecc--cCCCCHHHHHHHHHHH
Confidence 579999999999999999999998887777888887653211 12445556532111 111122222 222222
Q ss_pred HHhcCCceEEEEecccccC
Q 017792 131 LIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 131 ~~~~~~~~lvviDsl~~l~ 149 (366)
......++|+||....+.
T Consensus 218 -~~~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 218 -AKARGIDVVLIDTAGRMH 235 (336)
T ss_pred -HHhCCCCEEEEECCCccC
Confidence 233467899999987664
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 366 | ||||
| 1ubc_A | 349 | Structure Of Reca Protein Length = 349 | 2e-96 | ||
| 2zr0_A | 349 | Msreca-Q196e Mutant Length = 349 | 5e-96 | ||
| 2zrc_A | 349 | Msreca Q196n Form Iv Length = 349 | 7e-96 | ||
| 2zrh_A | 349 | Msreca Q196a Form Iv Length = 349 | 9e-96 | ||
| 3cmu_A | 2050 | Mechanism Of Homologous Recombination From The Reca | 5e-94 | ||
| 1g18_A | 350 | Reca-Adp-Alf4 Complex Length = 350 | 6e-94 | ||
| 3cmt_A | 1706 | Mechanism Of Homologous Recombination From The Reca | 7e-94 | ||
| 3cmv_A | 1357 | Mechanism Of Homologous Recombination From The Reca | 8e-94 | ||
| 2rec_A | 353 | Reca Hexamer Model, Electron Microscopy Length = 35 | 1e-93 | ||
| 1n03_A | 352 | Model For Active Reca Filament Length = 352 | 1e-93 | ||
| 1u94_A | 356 | Crystal Structure Of E. Coli Reca In A Compressed H | 1e-93 | ||
| 3hr8_A | 356 | Crystal Structure Of Thermotoga Maritima Reca Lengt | 2e-85 | ||
| 1xp8_A | 366 | "deinococcus Radiodurans Reca In Complex With Atp-G | 1e-81 | ||
| 3io5_A | 333 | Crystal Structure Of A Dimeric Form Of The Uvsx Rec | 1e-08 | ||
| 2cvf_A | 220 | Crystal Structure Of The Radb Recombinase Length = | 6e-06 | ||
| 2w0m_A | 235 | Crystal Structure Of Sso2452 From Sulfolobus Solfat | 2e-05 | ||
| 2dfl_A | 324 | Crystal Structure Of Left-Handed Rada Filament Leng | 5e-05 | ||
| 2bke_A | 324 | Conformational Flexibility Revealed By The Crystal | 3e-04 | ||
| 1pzn_A | 349 | Rad51 (Rada) Length = 349 | 3e-04 |
| >pdb|1UBC|A Chain A, Structure Of Reca Protein Length = 349 | Back alignment and structure |
|
| >pdb|2ZR0|A Chain A, Msreca-Q196e Mutant Length = 349 | Back alignment and structure |
|
| >pdb|2ZRC|A Chain A, Msreca Q196n Form Iv Length = 349 | Back alignment and structure |
|
| >pdb|2ZRH|A Chain A, Msreca Q196a Form Iv Length = 349 | Back alignment and structure |
|
| >pdb|3CMU|A Chain A, Mechanism Of Homologous Recombination From The Reca- SsdnaDSDNA STRUCTURES Length = 2050 | Back alignment and structure |
|
| >pdb|1G18|A Chain A, Reca-Adp-Alf4 Complex Length = 350 | Back alignment and structure |
|
| >pdb|3CMT|A Chain A, Mechanism Of Homologous Recombination From The Reca- SsdnaDSDNA STRUCTURES Length = 1706 | Back alignment and structure |
|
| >pdb|3CMV|A Chain A, Mechanism Of Homologous Recombination From The Reca- SsdnaDSDNA STRUCTURES Length = 1357 | Back alignment and structure |
|
| >pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy Length = 353 | Back alignment and structure |
|
| >pdb|1N03|A Chain A, Model For Active Reca Filament Length = 352 | Back alignment and structure |
|
| >pdb|1U94|A Chain A, Crystal Structure Of E. Coli Reca In A Compressed Helical Filament Form 2 Length = 356 | Back alignment and structure |
|
| >pdb|3HR8|A Chain A, Crystal Structure Of Thermotoga Maritima Reca Length = 356 | Back alignment and structure |
|
| >pdb|1XP8|A Chain A, "deinococcus Radiodurans Reca In Complex With Atp-Gamma-S" Length = 366 | Back alignment and structure |
|
| >pdb|3IO5|A Chain A, Crystal Structure Of A Dimeric Form Of The Uvsx Recombinase Core Domain From Enterobacteria Phage T4 Length = 333 | Back alignment and structure |
|
| >pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase Length = 220 | Back alignment and structure |
|
| >pdb|2W0M|A Chain A, Crystal Structure Of Sso2452 From Sulfolobus Solfataricus P2 Length = 235 | Back alignment and structure |
|
| >pdb|2DFL|A Chain A, Crystal Structure Of Left-Handed Rada Filament Length = 324 | Back alignment and structure |
|
| >pdb|2BKE|A Chain A, Conformational Flexibility Revealed By The Crystal Structure Of A Crenarchaeal Rada Length = 324 | Back alignment and structure |
|
| >pdb|1PZN|A Chain A, Rad51 (Rada) Length = 349 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} Length = 356 | Back alignment and structure |
|---|
Score = 501 bits (1291), Expect = e-179
Identities = 173/354 (48%), Positives = 241/354 (68%), Gaps = 8/354 (2%)
Query: 2 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVV 61
+K L++AL +I +FGKGSIM LG + V V+ TGS A+DIA G GG P+GR+V
Sbjct: 5 KQKKSVLEKALKRIEENFGKGSIMILGDETQVQPVEVIPTGSLAIDIATGVGGYPRGRIV 64
Query: 62 EIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCG 121
EI+G E+SGKTTLALH IAEAQ+ GG FIDAEHALDP A+ +GV ++LL++QPD G
Sbjct: 65 EIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHG 124
Query: 122 EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL 181
EQAL +VD L+RSG VD++VVDSVAALVP+ E++G MGD + +QARLMSQALRK++ S+
Sbjct: 125 EQALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSV 184
Query: 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGS 241
+ S+ ++IF NQ+R K+ FG P E T GG ALKFYA++R+ ++R +K+G++ IG+
Sbjct: 185 NKSKAVVIFTNQIRMKIGVM-FGSP-ETTTGGLALKFYATMRMEVRRGEPIKEGKDVIGN 242
Query: 242 QIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNFR- 300
I+VKIVKNK+APPFKTAQ + +GKGI RE E+ ++A+ + G+ + Y
Sbjct: 243 VISVKIVKNKVAPPFKTAQTYIIYGKGIDREYELFNIAVNEGIVDRKGSWYYYTTLKGEE 302
Query: 301 -----GKEAFKQFLVENESVREELVIKLREKLVVDHKEPQTAVTDEDSTEETVS 349
G QFL +N + E+ ++REK + E + ++ S+ E S
Sbjct: 303 VSLGQGSSNAVQFLKDNPEIAGEIERRIREKYGLLSVEKEEQRKEKKSSGEEAS 356
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... Length = 349 | Back alignment and structure |
|---|
Score = 496 bits (1279), Expect = e-178
Identities = 178/346 (51%), Positives = 251/346 (72%), Gaps = 4/346 (1%)
Query: 2 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVV 61
++ AL+ A+ QI +FGKGS+M LG V + V+ TGS +LD+ALG GGLP+GRV+
Sbjct: 6 PDREKALELAMAQIDKNFGKGSVMRLGEEVRQP-ISVIPTGSISLDVALGIGGLPRGRVI 64
Query: 62 EIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCG 121
EIYGPE+SGKTT+ALH +A AQ GG FIDAEHALDP A+ +GV T++LL++QPD G
Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124
Query: 122 EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL 181
EQAL + D L+RSG++D++V+DSVAALVP+ E++GEMGD+H+ +QARLMSQALRK++ +L
Sbjct: 125 EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184
Query: 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGS 241
+ S T IFIN++R K+ FG P E T GG ALKFYASVRL+++RI +K G + +G+
Sbjct: 185 NNSGTTAIFINELREKIGVM-FGSP-ETTTGGKALKFYASVRLDVRRIETLKDGTDAVGN 242
Query: 242 QIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-R 300
+ VK+VKNK++PPFK A+F++ +G+GISRE +ID+ ++H F K+G+ FTY +
Sbjct: 243 RTRVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQ 302
Query: 301 GKEAFKQFLVENESVREELVIKLREKLVVDHKEPQTAVTDEDSTEE 346
GKE ++FL+EN V E+ K++EKL + A + +
Sbjct: 303 GKENARKFLLENTDVANEIEKKIKEKLGIGAVVTAEADDVLPAPVD 348
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A Length = 356 | Back alignment and structure |
|---|
Score = 496 bits (1279), Expect = e-177
Identities = 187/346 (54%), Positives = 238/346 (68%), Gaps = 4/346 (1%)
Query: 2 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVV 61
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+V
Sbjct: 8 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMD-VETISTGSLSLDIALGAGGLPMGRIV 66
Query: 62 EIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCG 121
EIYGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A +GV +NLL +QPD G
Sbjct: 67 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 126
Query: 122 EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL 181
EQAL + D L RSG+VDV+VVDSVAAL PK E++GE+GD+HM + AR+MSQA+RKL+ +L
Sbjct: 127 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 186
Query: 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGS 241
S T+LIFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK+GE +GS
Sbjct: 187 KQSNTLLIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGS 244
Query: 242 QIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-R 300
+ VK+VKNK+A PFK A+F++ +G+GI+ E++DL +K K KAGA ++Y +
Sbjct: 245 ETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQ 304
Query: 301 GKEAFKQFLVENESVREELVIKLREKLVVDHKEPQTAVTDEDSTEE 346
GK +L +N +E+ K+RE L+ + D+
Sbjct: 305 GKANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVA 350
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Length = 366 | Back alignment and structure |
|---|
Score = 491 bits (1265), Expect = e-175
Identities = 165/348 (47%), Positives = 232/348 (66%), Gaps = 5/348 (1%)
Query: 2 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVV 61
++ A++ A+ QI +FGKGSIM LG V VVSTGS +LD+ALG GG+P+GR+
Sbjct: 19 KERSKAIETAMSQIEKAFGKGSIMKLGAESKLD-VQVVSTGSLSLDLALGVGGIPRGRIT 77
Query: 62 EIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCG 121
EIYGPE+ GKTTLAL ++A+AQ+ GG C FIDAEHALDP A +GV T+ LL++QPD G
Sbjct: 78 EIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNG 137
Query: 122 EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL 181
EQAL +++ L+RSG++DVVVVDSVAAL P+ E++G+MGD+ +QARLMSQALRKL+ L
Sbjct: 138 EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAIL 197
Query: 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG-LVKKGEETIG 240
S + T IFINQVR K+ +G P E T GG ALKFYASVRL++++IG K G + +
Sbjct: 198 SKTGTAAIFINQVREKIGVM-YGNP-ETTTGGRALKFYASVRLDVRKIGQPTKVGNDAVA 255
Query: 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF- 299
+ + +K VKNK+A PFK + L +GKG + S+++ LA KAG+ ++Y D
Sbjct: 256 NTVKIKTVKNKVAAPFKEVELALVYGKGFDQLSDLVGLAADMDIIKKAGSFYSYGDERIG 315
Query: 300 RGKEAFKQFLVENESVREELVIKLREKLVVDHKEPQTAVTDEDSTEET 347
+GKE ++ E + +E+ ++ + + A+ + E
Sbjct: 316 QGKEKTIAYIAERPEMEQEIRDRVMAAIRAGNAGEAPALAPAPAAPEA 363
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Length = 1706 | Back alignment and structure |
|---|
Score = 494 bits (1275), Expect = e-162
Identities = 192/364 (52%), Positives = 247/364 (67%), Gaps = 4/364 (1%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+
Sbjct: 327 DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMD-VETISTGSLSLDIALGAGGLPMGRI 385
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120
VEIYGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A +GV +NLL +QPD
Sbjct: 386 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 445
Query: 121 GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180
GEQAL + D L RSG+VDV+VVDSVAAL PK E++GE+GD+HM + AR+MSQA+RKL+ +
Sbjct: 446 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 505
Query: 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIG 240
L S T+LIFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK+GE +G
Sbjct: 506 LKQSNTLLIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVG 563
Query: 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF- 299
S+ VK+VKNK+A PFK A+F++ +G+GI+ E++DL +K K KAGA ++Y
Sbjct: 564 SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIG 623
Query: 300 RGKEAFKQFLVENESVREELVIKLREKLVVDHKEPQTAVTDEDSTEETVSTISPDSTDEE 359
+GK +L +N +E+ K+RE L+ + + T ++S I +
Sbjct: 624 QGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTTGSTGSMGHTTGSMSAIDENKQKAL 683
Query: 360 AAAV 363
AAA+
Sbjct: 684 AAAL 687
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Length = 1706 | Back alignment and structure |
|---|
Score = 494 bits (1273), Expect = e-162
Identities = 186/331 (56%), Positives = 236/331 (71%), Gaps = 4/331 (1%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+
Sbjct: 1375 DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMD-VETISTGSLSLDIALGAGGLPMGRI 1433
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120
VEIYGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A +GV +NLL +QPD
Sbjct: 1434 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 1493
Query: 121 GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180
GEQAL + D L RSG+VDV+VVDSVAAL PK E++GE+GD+HM + AR+MSQA+RKL+ +
Sbjct: 1494 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 1553
Query: 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIG 240
L S T+LIFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK+GE +G
Sbjct: 1554 LKQSNTLLIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVG 1611
Query: 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF- 299
S+ VK+VKNK+A PFK A+F++ +G+GI+ E++DL +K K KAGA ++Y
Sbjct: 1612 SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIG 1671
Query: 300 RGKEAFKQFLVENESVREELVIKLREKLVVD 330
+GK +L +N +E+ K+RE L+ +
Sbjct: 1672 QGKANATAWLKDNPETAKEIEKKVRELLLSN 1702
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Length = 1706 | Back alignment and structure |
|---|
Score = 493 bits (1270), Expect = e-161
Identities = 186/359 (51%), Positives = 242/359 (67%), Gaps = 4/359 (1%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+
Sbjct: 676 DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMD-VETISTGSLSLDIALGAGGLPMGRI 734
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120
VEIYGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A +GV +NLL +QPD
Sbjct: 735 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 794
Query: 121 GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180
GEQAL + D L RSG+VDV+VVDSVAAL PK E++GE+GD+HM + AR+MSQA+RKL+ +
Sbjct: 795 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 854
Query: 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIG 240
L S T+LIFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK+GE +G
Sbjct: 855 LKQSNTLLIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVG 912
Query: 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF- 299
S+ VK+VKNK+A PFK A+F++ +G+GI+ E++DL +K K KAGA ++Y
Sbjct: 913 SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIG 972
Query: 300 RGKEAFKQFLVENESVREELVIKLREKLVVDHKEPQTAVTDEDSTEETVSTISPDSTDE 358
+GK +L +N +E+ K+RE L+ + + + + ++ +
Sbjct: 973 QGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTTGSTGSASGSSTGSMSAIDENKQK 1031
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Length = 1706 | Back alignment and structure |
|---|
Score = 492 bits (1269), Expect = e-161
Identities = 191/364 (52%), Positives = 246/364 (67%), Gaps = 4/364 (1%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+
Sbjct: 1026 DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMD-VETISTGSLSLDIALGAGGLPMGRI 1084
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120
VEIYGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A +GV +NLL +QPD
Sbjct: 1085 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 1144
Query: 121 GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180
GEQAL + D L RSG+VDV+VVDSVAAL PK E++GE+GD+HM + AR+MSQA+RKL+ +
Sbjct: 1145 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 1204
Query: 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIG 240
L S T+LIFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK+GE +G
Sbjct: 1205 LKQSNTLLIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVG 1262
Query: 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF- 299
S+ VK+VKNK+A PFK A+F++ +G+GI+ E++DL +K K KAGA ++Y
Sbjct: 1263 SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIG 1322
Query: 300 RGKEAFKQFLVENESVREELVIKLREKLVVDHKEPQTAVTDEDSTEETVSTISPDSTDEE 359
+GK +L +N +E+ K+RE L+ + + ++S I +
Sbjct: 1323 QGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTTGSTGSMSGRTGSMSAIDENKQKAL 1382
Query: 360 AAAV 363
AAA+
Sbjct: 1383 AAAL 1386
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Length = 1706 | Back alignment and structure |
|---|
Score = 459 bits (1183), Expect = e-149
Identities = 174/338 (51%), Positives = 228/338 (67%), Gaps = 3/338 (0%)
Query: 27 LGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG 86
+ V +STGS +LDIALG GGLP GR+VEIYGPE+SGKTTL L VIA AQR+G
Sbjct: 3 MHGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 62
Query: 87 GYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVA 146
C FIDAEHALDP A +GV +NLL +QPD GEQAL + D L RSG+VDV+VVDSVA
Sbjct: 63 KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 122
Query: 147 ALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGP 206
AL PK E++GE+GD+HM + AR+MSQA+RKL+ +L S T+LIFINQ+R K+ FG P
Sbjct: 123 ALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM-FGNP 181
Query: 207 TEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFG 266
E T GGNALKFYASVRL+I+RIG VK+GE +GS+ VK+VKNK+A PFK A+F++ +G
Sbjct: 182 -ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG 240
Query: 267 KGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVIKLRE 325
+GI+ E++DL +K K KAGA ++Y +GK +L +N +E+ K+RE
Sbjct: 241 EGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRE 300
Query: 326 KLVVDHKEPQTAVTDEDSTEETVSTISPDSTDEEAAAV 363
L+ + + + I + AAA+
Sbjct: 301 LLLSNPNSTTGSTGSGTTGSTGSMAIDENKQKALAAAL 338
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Length = 2050 | Back alignment and structure |
|---|
Score = 498 bits (1285), Expect = e-162
Identities = 190/362 (52%), Positives = 242/362 (66%), Gaps = 4/362 (1%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+
Sbjct: 1371 DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMD-VETISTGSLSLDIALGAGGLPMGRI 1429
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120
VEIYGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A +GV +NLL +QPD
Sbjct: 1430 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 1489
Query: 121 GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180
GEQAL + D L RSG+VDV+VVDSVAAL PK E++GE+GD+HM + AR+MSQA+RKL+ +
Sbjct: 1490 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 1549
Query: 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIG 240
L S T+LIFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK+GE +G
Sbjct: 1550 LKQSNTLLIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVG 1607
Query: 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF- 299
S+ VK+VKNK+A PFK A+F++ +G+GI+ E++DL +K K KAGA ++Y
Sbjct: 1608 SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIG 1667
Query: 300 RGKEAFKQFLVENESVREELVIKLREKLVVDHKEPQTAVTDEDSTEETVSTISPDSTDEE 359
+GK +L +N +E+ K+RE L+ + + ST +
Sbjct: 1668 QGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTTGSTGSGSSTGSMSAIDENKQKALA 1727
Query: 360 AA 361
AA
Sbjct: 1728 AA 1729
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Length = 2050 | Back alignment and structure |
|---|
Score = 495 bits (1277), Expect = e-161
Identities = 194/364 (53%), Positives = 247/364 (67%), Gaps = 4/364 (1%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+
Sbjct: 676 DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMD-VETISTGSLSLDIALGAGGLPMGRI 734
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120
VEIYGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A +GV +NLL +QPD
Sbjct: 735 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 794
Query: 121 GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180
GEQAL + D L RSG+VDV+VVDSVAAL PK E++GE+GD+HM + AR+MSQA+RKL+ +
Sbjct: 795 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 854
Query: 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIG 240
L S T+LIFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK+GE +G
Sbjct: 855 LKQSNTLLIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVG 912
Query: 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF- 299
S+ VK+VKNK+A PFK A+F++ +G+GI+ E++DL +K K KAGA ++Y
Sbjct: 913 SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIG 972
Query: 300 RGKEAFKQFLVENESVREELVIKLREKLVVDHKEPQTAVTDEDSTEETVSTISPDSTDEE 359
+GK +L +N +E+ K+RE L+ + + ST T S I +
Sbjct: 973 QGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTTGSTGSMASTGSTGSAIDENKQKAL 1032
Query: 360 AAAV 363
AAA+
Sbjct: 1033 AAAL 1036
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Length = 2050 | Back alignment and structure |
|---|
Score = 495 bits (1276), Expect = e-161
Identities = 192/364 (52%), Positives = 246/364 (67%), Gaps = 4/364 (1%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+
Sbjct: 327 DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMD-VETISTGSLSLDIALGAGGLPMGRI 385
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120
VEIYGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A +GV +NLL +QPD
Sbjct: 386 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 445
Query: 121 GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180
GEQAL + D L RSG+VDV+VVDSVAAL PK E++GE+GD+HM + AR+MSQA+RKL+ +
Sbjct: 446 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 505
Query: 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIG 240
L S T+LIFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK+GE +G
Sbjct: 506 LKQSNTLLIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVG 563
Query: 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF- 299
S+ VK+VKNK+A PFK A+F++ +G+GI+ E++DL +K K KAGA ++Y
Sbjct: 564 SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIG 623
Query: 300 RGKEAFKQFLVENESVREELVIKLREKLVVDHKEPQTAVTDEDSTEETVSTISPDSTDEE 359
+GK +L +N +E+ K+RE L+ + + T +S I +
Sbjct: 624 QGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTTGSTGSMGHTTGAMSAIDENKQKAL 683
Query: 360 AAAV 363
AAA+
Sbjct: 684 AAAL 687
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Length = 2050 | Back alignment and structure |
|---|
Score = 492 bits (1269), Expect = e-160
Identities = 187/358 (52%), Positives = 239/358 (66%), Gaps = 4/358 (1%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+
Sbjct: 1025 DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMD-VETISTGSLSLDIALGAGGLPMGRI 1083
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120
VEIYGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A +GV +NLL +QPD
Sbjct: 1084 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 1143
Query: 121 GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180
GEQAL + D L RSG+VDV+VVDSVAAL PK E++GE+GD+HM + AR+MSQA+RKL+ +
Sbjct: 1144 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 1203
Query: 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIG 240
L S T+LIFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK+GE +G
Sbjct: 1204 LKQSNTLLIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVG 1261
Query: 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF- 299
S+ VK+VKNK+A PFK A+F++ +G+GI+ E++DL +K K KAGA ++Y
Sbjct: 1262 SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIG 1321
Query: 300 RGKEAFKQFLVENESVREELVIKLREKLVVDHKEPQTAVTDEDSTEETVSTISPDSTD 357
+GK +L +N +E+ K+RE L+ + A + +
Sbjct: 1322 QGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTTGATGAMSGRMSAIDENKQKALA 1379
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Length = 2050 | Back alignment and structure |
|---|
Score = 492 bits (1269), Expect = e-160
Identities = 186/331 (56%), Positives = 236/331 (71%), Gaps = 4/331 (1%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
K AL AL QI FGKGSIM LG + V +STGS +LDIALG GGLP GR+
Sbjct: 1719 DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMD-VETISTGSLSLDIALGAGGLPMGRI 1777
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120
VEIYGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A +GV +NLL +QPD
Sbjct: 1778 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 1837
Query: 121 GEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 180
GEQAL + D L RSG+VDV+VVDSVAAL PK E++GE+GD+HM + AR+MSQA+RKL+ +
Sbjct: 1838 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 1897
Query: 181 LSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIG 240
L S T+LIFINQ+R K+ FG P E T GGNALKFYASVRL+I+RIG VK+GE +G
Sbjct: 1898 LKQSNTLLIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVG 1955
Query: 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF- 299
S+ VK+VKNK+A PFK A+F++ +G+GI+ E++DL +K K KAGA ++Y
Sbjct: 1956 SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIG 2015
Query: 300 RGKEAFKQFLVENESVREELVIKLREKLVVD 330
+GK +L +N +E+ K+RE L+ +
Sbjct: 2016 QGKANATAWLKDNPETAKEIEKKVRELLLSN 2046
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Length = 2050 | Back alignment and structure |
|---|
Score = 459 bits (1183), Expect = e-148
Identities = 174/329 (52%), Positives = 227/329 (68%), Gaps = 3/329 (0%)
Query: 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95
V +STGS +LDIALG GGLP GR+VEIYGPE+SGKTTL L VIA AQR+G C FIDAE
Sbjct: 12 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 71
Query: 96 HALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELD 155
HALDP A +GV +NLL +QPD GEQAL + D L RSG+VDV+VVDSVAAL PK E++
Sbjct: 72 HALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 131
Query: 156 GEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNA 215
GE+GD+HM + AR+MSQA+RKL+ +L S T+LIFINQ+R K+ FG P E T GGNA
Sbjct: 132 GEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM-FGNP-ETTTGGNA 189
Query: 216 LKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEI 275
LKFYASVRL+I+RIG VK+GE +GS+ VK+VKNK+A PFK A+F++ +G+GI+ E+
Sbjct: 190 LKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGEL 249
Query: 276 IDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVIKLREKLVVDHKEP 334
+DL +K K KAGA ++Y +GK +L +N +E+ K+RE L+ +
Sbjct: 250 VDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNST 309
Query: 335 QTAVTDEDSTEETVSTISPDSTDEEAAAV 363
+ + I + AAA+
Sbjct: 310 TGSTGSGTTGSTGSMAIDENKQKALAAAL 338
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} Length = 333 | Back alignment and structure |
|---|
Score = 367 bits (944), Expect = e-127
Identities = 69/326 (21%), Positives = 130/326 (39%), Gaps = 20/326 (6%)
Query: 35 HVPVVSTGSFALDIALGT---GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYC 89
H+ VV T ++IAL GG+ G ++ + GP S K+ L +++ RQ C
Sbjct: 3 HMDVVRTKIPMMNIALSGEITGGMQSGLLI-LAGPSKSFKSNFGLTMVSSYMRQYPDAVC 61
Query: 90 VFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ-ALSLVDTL--IRSGSVDVVVVDSVA 146
+F D+E + P+ ++GV E ++ EQ + +V+ L I G VV +DS+
Sbjct: 62 LFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLG 121
Query: 147 ALVPKGELDGEMGDAHMA--MQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFG 204
L K E + + + ++ +A+ M R ++ S I IN F
Sbjct: 122 NLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYETQEMF--- 178
Query: 205 GPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELE 264
++ GG Y++ + I +K G + G Q + + K++ +++
Sbjct: 179 --SKTVMGGGTGPMYSADTVFIIGKRQIKDGSDLQGYQFVLNVEKSRTVKEKSKFFIDVK 236
Query: 265 FGKGISRESEIIDLALKHKFASK-AGAMFTYNDRNFR---GKEAFKQFLVENESVREELV 320
F GI S ++D+AL+ F K + + K + ++ +
Sbjct: 237 FDGGIDPYSGLLDMALELGFVVKPKNGWYAREFLDEETGEMIREEKSWRAKDTNCTTFWG 296
Query: 321 IKLREKLVVDHKEPQTAVTDEDSTEE 346
+ + D + + DS E
Sbjct: 297 PLFKHQPFRDAIKRAYQLGAIDSNEI 322
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Length = 324 | Back alignment and structure |
|---|
Score = 200 bits (510), Expect = 6e-62
Identities = 68/287 (23%), Positives = 122/287 (42%), Gaps = 40/287 (13%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
+S +++A D + F + R +V +STGS ALD L GG+ +
Sbjct: 55 LSTAQKIIKEARDALDIRFKTALEVKKERM----NVKKISTGSQALDGLLA-GGIETRTM 109
Query: 61 VEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDP----SLAETIGVKT 110
E +G SGKT L + Q G V+ID E ++A+ +G+
Sbjct: 110 TEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDI 169
Query: 111 E----NLLLAQPDCGEQALSLVDTL----IRSGSVDVVVVDSVAALVPKGELDGEMGDAH 162
+ N+ + + +++VD L + S+ ++VVDSV + + E G +
Sbjct: 170 DNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHF-RAEYPGRE---N 225
Query: 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASV 222
+A++ + +++ L +L+ + +I NQV A+ F +G P V GG+ L +
Sbjct: 226 LAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMF-YGDP-TVAVGGHTLYHVPGI 283
Query: 223 RLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGI 269
R+ +K+ +G I ++V P F L +GI
Sbjct: 284 RIQLKKS----RGNRRI-----ARVVDAPHLPE-GEVVFALT-EEGI 319
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A Length = 343 | Back alignment and structure |
|---|
Score = 197 bits (503), Expect = 1e-60
Identities = 66/294 (22%), Positives = 117/294 (39%), Gaps = 40/294 (13%)
Query: 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 60
+K D + A I F R + V ++TGS D LG GG+ +
Sbjct: 70 EAKVDKIKEAANKLIEPGFLTAFEYSEKR----KMVFHITTGSQEFDKLLG-GGIESMAI 124
Query: 61 VEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDP----SLAETIGVKT 110
E +G +GKT L+ + AQ GG +FID E+ P +A+ V
Sbjct: 125 TEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDH 184
Query: 111 E----NLLLAQPDCGEQALSLVDTLI-----RSGSVDVVVVDSVAALVPKGELDGEMGDA 161
+ N+L A+ E + L+D + +G ++++DS+ AL + + G
Sbjct: 185 DAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALF-RVDFS---GRG 240
Query: 162 HMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKL-STFGFGGPTEVTCGGNALKFYA 220
+A + + ++Q L +L + NQ+ A +T F + GG+ L +
Sbjct: 241 ELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHAS 300
Query: 221 SVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESE 274
+ R+++++ +GE I + + P A F + GI E
Sbjct: 301 TTRISLRKG----RGELRI------AKIYDSPEMPENEATFAIT-AGGIGDAKE 343
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* Length = 400 | Back alignment and structure |
|---|
Score = 174 bits (441), Expect = 7e-51
Identities = 63/291 (21%), Positives = 114/291 (39%), Gaps = 38/291 (13%)
Query: 2 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVV 61
+K D L +A + F + + R + ++TGS LD LG GG+ G +
Sbjct: 127 AKADKLLNEAARLVPMGFVTAADFHMRR----SELICLTTGSKNLDTLLG-GGVETGSIT 181
Query: 62 EIYGPEASGKTTLALHVIAEAQ------RQGGYCVFIDAEHALDP----SLAETIGVKTE 111
E++G +GK+ L + Q G C++ID E P S+A+ G+ +
Sbjct: 182 ELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD 241
Query: 112 NLL-------LAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMA 164
+ L D + L ++ ++VVDSV AL + + G +
Sbjct: 242 DALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMAL-YRTDFSGRGELSA-- 298
Query: 165 MQARLMSQALRKLSHSLSLSQTILIFINQVRAKL-STFGFGGPTEVTCGGNALKFYASVR 223
+ +++ +R L ++ NQV A++ F + GGN + + ++ R
Sbjct: 299 -RQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTR 357
Query: 224 LNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESE 274
L K+ KG + + K+V + P F + G+ E
Sbjct: 358 LGFKKG----KGCQRL-----CKVVDSPCLPE-AECVFAIY-EDGVGDPRE 397
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 Length = 349 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 6e-50
Identities = 62/301 (20%), Positives = 115/301 (38%), Gaps = 50/301 (16%)
Query: 1 MSKKDLA---------LQQALDQITSSFGKGSIMWLGRSVTPRH-VPVVSTGSFALDIAL 50
S +L + + + G+ M + R + +STGS +LD L
Sbjct: 65 ASPIELKEVAGISEGTALKIIQAARKAANLGTFMRADEYLKKRATIGRISTGSKSLDKLL 124
Query: 51 GTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDPS--- 101
G GG+ + E++G SGKT LA + Q G ++ID E+ P
Sbjct: 125 G-GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIR 183
Query: 102 -LAETIGVKTENLL-----LAQPDCGEQALSL-------VDTLIRSGSVDVVVVDSVAAL 148
+A+ G+ + +L + Q L + + L V +++VDS+ +
Sbjct: 184 EIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243
Query: 149 VPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE 208
+G +A + + +++ L L +L + NQV+A+ F G
Sbjct: 244 FRSEY----IGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPD--AFFGDPT 297
Query: 209 VTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKG 268
GG+ L A++R+ +++ G + +++ P A F + KG
Sbjct: 298 RPIGGHILAHSATLRVYLRKGK---------GGKRIARLIDAPHLPE-GEAVFSIT-EKG 346
Query: 269 I 269
I
Sbjct: 347 I 347
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Length = 243 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 2e-47
Identities = 50/253 (19%), Positives = 96/253 (37%), Gaps = 34/253 (13%)
Query: 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ------RQGGYC 89
+ ++TGS LD L GG+ G + E++G +GKT + + Q G
Sbjct: 3 IIQITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKA 61
Query: 90 VFIDAEHALDPS----LAETIGVKTENLL-------LAQPDCGEQALSLVDTLIRSGSVD 138
++ID E P +AE G+ ++L D Q L ++
Sbjct: 62 MYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYA 121
Query: 139 VVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKL 198
+++VDS AL + + G ++ + +++ LR L ++ NQV A++
Sbjct: 122 LLIVDSATALY-RTDYS---GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV 177
Query: 199 -STFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFK 257
F + GGN + ++ RL +++ + + + + P
Sbjct: 178 DGAAMFAADPKKPIGGNIIAHASTTRLYLRK----------GRGETRICKIYDSPCLPEA 227
Query: 258 TAQFELEFGKGIS 270
A F + G+
Sbjct: 228 EAMFAIN-ADGVG 239
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* Length = 322 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 5e-46
Identities = 64/296 (21%), Positives = 106/296 (35%), Gaps = 50/296 (16%)
Query: 2 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVV 61
+ A D F G + RS V +ST S LD LG GGL V
Sbjct: 47 KAAAKMIMGARDLCDLGFKSGIDLLKQRS----TVWKLSTSSSELDSVLG-GGLESQSVT 101
Query: 62 EIYGPEASGKTTLALHVIAEAQR----------------QGGYCVFIDAEHALDPS---- 101
E G SGKT + Q V+ID E P
Sbjct: 102 EFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ 161
Query: 102 LAETIGVKTE----NLLLAQPDCGEQALSLVDTL----IRSGSVDVVVVDSVAALVPKGE 153
+AE G+ + N +A+ + + + + ++ +VV+DS+ +
Sbjct: 162 MAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEY 221
Query: 154 LDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGG 213
G +A + + + + + L+ L +++ NQV AK F G E GG
Sbjct: 222 ----TGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPD--AFFGMAEQAIGG 275
Query: 214 NALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGI 269
+ + A+ R +++ KG++ + K+ + P A F + KGI
Sbjct: 276 HIVGHAATFRFFVRKG----KGDKRV-----AKLYDSPHLPD-AEAIFRIT-EKGI 320
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Length = 220 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 2e-16
Identities = 57/243 (23%), Positives = 96/243 (39%), Gaps = 38/243 (15%)
Query: 38 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97
++STG+ +LD LG GG G + ++YGP ASGKTTLAL G ++D E
Sbjct: 1 MLSTGTKSLDSLLG-GGFAPGVLTQVYGPYASGKTTLALQT---GLLSGKKVAYVDTEGG 56
Query: 98 LDPS----LAETIGVKTE----NLLLAQPDCGEQALSLVDTL--IRSGSVDVVVVDSVAA 147
P +AET G+ E +L P ++ ++ +L + +VVVDS+ A
Sbjct: 57 FSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITA 116
Query: 148 LV-PKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGP 206
+ G + + Q L ++ ++ +I INQV F
Sbjct: 117 HYRAEENRSGLI------AELSRQLQVLLWIARKHNIP---VIVINQV-----HFDSRTE 162
Query: 207 TEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFG 266
L + L + ++ K + + +++ P A F +
Sbjct: 163 MTKPVAEQTLGYRCKDILRLDKLP---KPGLRV-----AVLERHRFRPEGLMAYFRIT-E 213
Query: 267 KGI 269
+GI
Sbjct: 214 RGI 216
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Length = 525 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 2e-12
Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 13/128 (10%)
Query: 33 PRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 92
VS+G LD G GG K ++ G +GKT L + A +
Sbjct: 257 RSSNVRVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILF 315
Query: 93 DAEHALD--PSLAETIGVKTENLLL----------AQPDCGEQALSLVDTLIRSGSVDVV 140
E + A + G+ E + + E L ++ + I +
Sbjct: 316 AYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARI 375
Query: 141 VVDSVAAL 148
+DS++AL
Sbjct: 376 AIDSLSAL 383
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Length = 525 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 4e-10
Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 22/141 (15%)
Query: 29 RSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE-AQRQGG 87
+ + + + T D GGLP GR + G +GKT ++ +
Sbjct: 11 NNSEHQAIAKMRTMIEGFDDISH-GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDE 69
Query: 88 YCVFIDAE----------HALDPSLAETIGVKTENLLLAQPDCGEQA----------LSL 127
VF+ E + LA+ + +L A PD Q +
Sbjct: 70 PGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIER 129
Query: 128 VDTLIRSGSVDVVVVDSVAAL 148
++ I+ V +DSV ++
Sbjct: 130 INYAIQKYRARRVSIDSVTSV 150
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Length = 247 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 6e-11
Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 46/199 (23%)
Query: 31 VTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCV 90
+T R V TG +D L GG+P+ VV + G +GKT + + + G +
Sbjct: 1 MTRR----VKTGIPGVDEILH-GGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGI 55
Query: 91 FIDAEHALD---------------------------PSLAETIGVKTENLLLAQPDCGEQ 123
++ E + + E ++ +
Sbjct: 56 YVALEEHPVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIRE 115
Query: 124 ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
+ ++ IR + VVVDSV L AR + +L L+
Sbjct: 116 FIEVLRQAIRDINAKRVVVDSVTTLYINKP-----------AMAR---SIILQLKRVLAG 161
Query: 184 SQTILIFINQVRAKLSTFG 202
+ IF++QV FG
Sbjct: 162 TGCTSIFVSQVSVGERGFG 180
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Length = 235 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 1e-10
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 23/135 (17%)
Query: 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI--- 92
V +STG D + GG+P+G + + G +GKT +LH IA+ R G C+++
Sbjct: 2 VSRLSTGILDFDKLIQ-GGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60
Query: 93 ---------------DAEHALDPSLA---ETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134
D E ++ L + K + L E +++ +
Sbjct: 61 ESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKL 120
Query: 135 GS-VDVVVVDSVAAL 148
G +V+DSV+AL
Sbjct: 121 GYGKARLVIDSVSAL 135
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 3e-09
Identities = 58/405 (14%), Positives = 103/405 (25%), Gaps = 132/405 (32%)
Query: 28 GRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG- 86
+ +V + L AL L + V I G SGKT +AL V + Q
Sbjct: 123 NQVFAKYNVSRLQP-YLKLRQALL--ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 87 ----------GYCVFIDAE--------HALDPSLAE------TIGVKTENL------LLA 116
C + + +DP+ I ++ ++ LL
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 117 QPDCGEQALSLVD----------------TLIRSGSVDVVVVDSVAALVPKGELDGEMGD 160
E L ++ L+ + V D ++A
Sbjct: 240 SKP-YENCLLVLLNVQNAKAWNAFNLSCKILLTTR--FKQVTDFLSAATTT--------- 287
Query: 161 AHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALK--- 217
H+++ S +L+ + + + + + P EV N +
Sbjct: 288 -HISLD---------HHSMTLTPDEVKSLLLKYLDCRPQDL----PREV-LTTNPRRLSI 332
Query: 218 FYASVRLNIKRIG-----LVKKGEETIGSQIAVKIVKNKLAPPFKTAQFE---------- 262
S+R + K I S + N L P F+
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSL------NVLEPAEYRKMFDRLSVFPPSAH 386
Query: 263 -----LEF--GKGISRESE-IIDLALKHKFASKAGAMFTY--NDRNFRGKEAFKQFLVEN 312
L I + +++ K+ K T V+
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE-------LKVKL 439
Query: 313 ESVREELVIKLREKLVVDHKEPQTAVTDEDSTEETVSTISPDSTD 357
E+ L + VDH +D + P D
Sbjct: 440 ENEYA-----LHRSI-VDHYNIPKTFDSDD--------LIPPYLD 470
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 8e-08
Identities = 48/337 (14%), Positives = 95/337 (28%), Gaps = 82/337 (24%)
Query: 76 LHVIAEAQRQGGYCVFI---DAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132
L V +A F+ D + D + + + ++ D L L TL+
Sbjct: 22 LSVFEDA--------FVDNFDCKDVQD-MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 133 RSGS--VDVVVVDSVAA----LVPKGELDGEMGDAHMAMQA------RLMS--QALRKLS 178
V V + + L+ + E M + RL + Q K
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSP--IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-- 128
Query: 179 HSLSLSQTILIFINQVRAKLST---------FGFGGPTEVTCG-----GNALKFYASVRL 224
+++S Q L ++R L G G G + Y
Sbjct: 129 YNVSRLQPYL----KLRQALLELRPAKNVLIDGVLG-----SGKTWVALDVCLSYKVQCK 179
Query: 225 NIKRIGLVKKGEETIGSQIAVKIVKN---KLAPPFKTAQFELEFGKGISRESEIIDLALK 281
+I + + +++++ ++ P + + + I I L+
Sbjct: 180 MDFKIFWLNLKNCNSPETV-LEMLQKLLYQIDPNWTS---RSDHSSNIKLRIHSIQAELR 235
Query: 282 HKFASKAGAMFTYND-----RNFRGKEAFKQF------LV--ENESVREELVIKLREKLV 328
SK Y + N + +A+ F L+ + V + L +
Sbjct: 236 RLLKSK-----PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 329 VDHKEPQTAVTDEDSTE--ETVSTISPDSTDEEAAAV 363
+DH +T ++ P E
Sbjct: 291 LDHHSM--TLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 5e-04
Identities = 55/403 (13%), Positives = 113/403 (28%), Gaps = 128/403 (31%)
Query: 12 LD-----QITSSFGKGS-IMWLGR--SVT-------PRHVPVV----------STGSFAL 46
L + ++F I+ R VT H+ +
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 47 DIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETI 106
+ LP E L +IAE+ R G + + +H L I
Sbjct: 310 YLDCRPQDLP---------REVLTTNPRRLSIIAESIRDG-LATWDNWKHVNCDKLTTII 359
Query: 107 GVKTENLLLAQPDCGE-----QALSL--VDTLIRS--------GSVDVVVVDSVAALVPK 151
L +P E LS+ I + + V+ V L
Sbjct: 360 ESSLNVL---EPA--EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 152 GELDGEMGDAHMAMQARLMSQALR---KLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE 208
++ + + + S L KL + +L ++I ++ +
Sbjct: 415 SLVEKQPKE----STISIPSIYLELKVKLENEYALHRSI---VDHYNIP----------K 457
Query: 209 VTCGGNALK------FYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFE 262
+ + FY+ + ++K I ++ F+ +
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL------------------FRMVFLD 499
Query: 263 LEFGKGISRESEIIDLALKHK---FASKAGAMFTYNDRNFRGKEAFKQFLVENESVREEL 319
F ++ ++H + + + T F +K ++ +N+ E L
Sbjct: 500 FRF----------LEQKIRHDSTAWNASGSILNTLQQLKF-----YKPYICDNDPKYERL 544
Query: 320 VIKLR------EKLVVDHKEP---QTAVTDEDST--EETVSTI 351
V + E+ ++ K + A+ ED EE +
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Length = 279 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 4e-06
Identities = 32/253 (12%), Positives = 75/253 (29%), Gaps = 42/253 (16%)
Query: 53 GGLPKGRVVEIYGPEASGKTTLALHVIA----------EAQRQGGYCVFIDAE------- 95
+ G V + P +GK+ LAL + A + G +++ AE
Sbjct: 25 PNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIH 84
Query: 96 -------HALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSG-SVDVVVVDSVAA 147
L + + L A D L R+ ++V+D++
Sbjct: 85 HRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRR 144
Query: 148 LVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPT 207
+ + + + + ++ S ++F++ + G G
Sbjct: 145 FHI--------EEENASGPMAQVIGRMEAIAADTGCS---IVFLHHASKGAAMMGAGDQQ 193
Query: 208 EVTCGGNALKFYASVRLNIKRIG-----LVKKGEETIGSQIAVKIVKNKLAPPFKTAQFE 262
+ + G + L + + + ++ + + K PF F
Sbjct: 194 QASRGSSVLVDNIRWQSYLSSMTSAEAEEWGVDDDQRRFFVRFGVSKANYGAPFADRWFR 253
Query: 263 LEFGKGISRESEI 275
G G+ + + +
Sbjct: 254 RHDG-GVLKPAVL 265
|
| >1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22 Length = 161 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-05
Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 3/109 (2%)
Query: 37 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEA-SGKTTLALHVIAE--AQRQGGYCVFID 93
+D E+ TL ++ E ++ + I
Sbjct: 23 NGAPLLDDVIDSPSSASIEEPAAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIA 82
Query: 94 AEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVV 142
+L G+ E +LL Q AL+L +R G VV
Sbjct: 83 PPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVS 131
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 366 | |||
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 100.0 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 100.0 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 100.0 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 100.0 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 100.0 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 100.0 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 100.0 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 100.0 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 100.0 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 99.97 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 99.97 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 99.97 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.96 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.96 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.96 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.93 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.93 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 99.93 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.93 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 99.92 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 99.91 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 99.91 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 99.91 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 99.91 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.89 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.89 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 99.86 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.85 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.84 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.81 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.73 | |
| 3bs4_A | 260 | Uncharacterized protein PH0321; structural genomic | 99.68 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 99.62 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 99.6 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 99.59 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 99.59 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 99.59 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 99.58 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 99.58 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 99.58 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 99.58 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 99.57 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.56 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 99.56 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 99.55 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 99.55 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 99.55 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 99.55 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 99.55 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 99.54 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 99.53 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 99.51 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 99.51 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 99.51 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 99.51 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 99.51 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 99.5 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 99.49 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 99.49 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 99.47 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 99.47 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.46 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 99.44 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.43 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 99.42 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 99.41 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.37 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.35 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.33 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.33 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.31 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.31 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 99.29 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 99.29 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.28 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.24 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.19 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.19 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.17 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.13 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.12 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.1 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.05 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.02 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.0 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 98.96 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 98.95 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 98.87 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 98.87 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 98.83 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 98.82 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 98.81 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 98.8 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 98.8 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 98.78 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.76 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 98.76 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.74 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.72 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.69 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 98.65 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 98.62 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 98.62 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 98.62 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 98.53 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 98.53 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 98.47 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 98.47 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 98.46 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 98.45 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 98.41 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 98.4 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 98.38 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 98.38 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 98.33 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 98.33 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 98.32 | |
| 1c9k_A | 180 | COBU, adenosylcobinamide kinase; alpha/beta struct | 98.31 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.3 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 98.28 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 98.27 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.26 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 98.26 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.24 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 98.23 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.22 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 98.21 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 98.21 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 98.2 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 98.17 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 98.17 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 98.17 | |
| 1oft_A | 161 | SULA, hypothetical protein PA3008; bacterial cell | 98.16 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 98.13 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.13 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.1 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 98.09 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 98.09 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.07 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.04 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 98.03 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 98.02 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 98.02 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 98.01 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 98.0 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.99 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 97.99 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.97 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.96 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 97.96 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 97.96 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 97.96 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 97.96 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 97.93 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.92 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.91 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.9 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 97.9 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.88 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.88 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 97.87 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 97.87 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 97.87 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 97.87 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 97.86 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 97.86 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.86 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 97.85 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.85 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 97.83 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 97.82 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.82 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.81 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.79 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.78 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 97.77 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.76 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.76 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.76 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 97.74 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.74 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 97.73 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.69 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 97.68 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.68 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.67 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.67 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 97.66 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.66 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.65 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 97.63 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 97.61 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.6 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.6 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 97.58 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 97.57 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.55 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.52 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 97.51 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 97.51 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 97.49 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 97.48 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.47 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 97.46 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 97.46 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 97.44 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.44 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.44 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 97.43 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 97.43 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 97.43 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.43 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.43 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 97.43 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 97.42 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 97.41 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.4 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.4 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 97.4 | |
| 3l0o_A | 427 | Transcription termination factor RHO; helicase, RH | 97.4 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 97.38 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 97.36 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 97.36 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.34 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 97.34 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.31 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.31 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 97.3 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.3 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.3 | |
| 2ck3_D | 482 | ATP synthase subunit beta\, mitochondrial; hydrola | 97.29 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.26 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 97.26 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.25 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.24 | |
| 2qe7_A | 502 | ATP synthase subunit alpha; blockage of ATP hydrol | 97.23 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.22 | |
| 2r9v_A | 515 | ATP synthase subunit alpha; TM1612, structural gen | 97.21 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 97.2 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.19 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.19 | |
| 1fx0_B | 498 | ATP synthase beta chain; latent ATPase, thermal st | 97.19 | |
| 2ck3_A | 510 | ATP synthase subunit alpha\, mitochondrial; hydrol | 97.18 | |
| 3oaa_A | 513 | ATP synthase subunit alpha; rossmann fold, hydrola | 97.18 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 97.16 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.16 | |
| 1fx0_A | 507 | ATP synthase alpha chain; latent ATPase, thermal s | 97.15 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.14 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 97.14 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.13 | |
| 4a8j_A | 361 | Elongator complex protein 4; transcription; 2.10A | 97.13 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.13 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 97.12 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.1 | |
| 3mfy_A | 588 | V-type ATP synthase alpha chain; A-type ATP syntha | 97.08 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.06 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 97.06 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.05 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.05 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 97.05 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 97.04 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.04 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 97.04 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 97.03 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.01 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 97.0 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.0 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 97.0 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 97.0 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 96.99 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.99 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 96.99 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.98 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.96 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 96.91 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 96.89 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.89 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.85 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.82 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 96.82 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.8 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 96.79 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 96.78 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 96.77 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.77 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.76 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.75 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.75 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 96.74 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 96.73 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.73 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 96.72 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.72 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 96.71 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 96.71 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.69 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.69 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.69 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.68 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.66 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 96.66 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 96.64 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 96.62 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.62 | |
| 3vr4_D | 465 | V-type sodium ATPase subunit D; V-ATPase, rotary m | 96.59 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.58 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 96.58 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.58 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.58 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.58 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 96.56 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 96.56 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.56 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.55 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.52 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 96.51 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.51 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 96.5 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.49 | |
| 3vr4_A | 600 | V-type sodium ATPase catalytic subunit A; V-ATPase | 96.47 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.46 | |
| 1wcv_1 | 257 | SOJ, segregation protein; ATPase, bacterial, chrom | 96.44 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.43 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 96.42 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.42 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.41 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.4 | |
| 2axn_A | 520 | 6-phosphofructo-2-kinase/fructose-2,6- biphosphata | 96.38 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.38 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 96.37 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.37 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.36 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 96.35 | |
| 3iqw_A | 334 | Tail-anchored protein targeting factor GET3; ATPas | 96.34 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 96.33 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.33 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 96.31 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 96.31 | |
| 3fkq_A | 373 | NTRC-like two-domain protein; RER070207001320, str | 96.31 | |
| 3gqb_B | 464 | V-type ATP synthase beta chain; A3B3, V-ATPase, AT | 96.3 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.29 | |
| 3q9l_A | 260 | Septum site-determining protein MIND; ATPase, bact | 96.27 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 96.27 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.26 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.26 | |
| 2c61_A | 469 | A-type ATP synthase non-catalytic subunit B; hydro | 96.26 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 96.26 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 96.26 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 96.26 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.25 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 96.24 | |
| 2iut_A | 574 | DNA translocase FTSK; nucleotide-binding, chromoso | 96.24 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 96.24 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.23 | |
| 3gqb_A | 578 | V-type ATP synthase alpha chain; A3B3, V-ATPase, A | 96.22 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.21 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.19 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 96.15 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 96.14 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 96.13 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.13 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 96.12 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 96.12 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.12 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 96.12 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.1 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.1 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.1 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.09 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.04 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.04 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 96.03 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 96.01 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 95.99 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.95 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 95.95 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.95 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 95.92 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 95.92 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 95.91 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 95.89 | |
| 1ofu_X | 119 | SULA, hypothetical protein PA3008; bacterial cell | 95.84 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 95.81 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.77 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.77 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 95.77 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.76 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 95.72 | |
| 1ihu_A | 589 | Arsenical pump-driving ATPase; aluminum fluoride, | 95.72 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.71 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.71 | |
| 1cp2_A | 269 | CP2, nitrogenase iron protein; oxidoreductase; 1.9 | 95.69 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.65 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 95.62 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 95.61 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 95.61 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 95.58 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.57 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 95.56 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 95.56 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 95.54 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.53 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 95.53 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 95.49 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.48 | |
| 3ea0_A | 245 | ATPase, para family; alpha-beta-alpha sandwich, st | 95.47 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 95.47 | |
| 3igf_A | 374 | ALL4481 protein; two-domained protein consisting o | 95.46 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 95.45 | |
| 3bfv_A | 271 | CAPA1, CAPB2, membrane protein CAPA1, protein tyro | 95.45 | |
| 2afh_E | 289 | Nitrogenase iron protein 1; nitrogen fixation, iro | 95.44 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 95.4 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.4 | |
| 3fwy_A | 314 | Light-independent protochlorophyllide reductase I | 95.4 | |
| 3cio_A | 299 | ETK, tyrosine-protein kinase ETK; WZC, escherichia | 95.38 | |
| 3io3_A | 348 | DEHA2D07832P; chaperone, membrane traffic, ATPase; | 95.36 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 95.31 | |
| 3kjh_A | 254 | CO dehydrogenase/acetyl-COA synthase complex, acce | 95.29 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 95.23 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.22 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.22 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 95.21 | |
| 1e9r_A | 437 | Conjugal transfer protein TRWB; coupling protein, | 95.19 | |
| 1g3q_A | 237 | MIND ATPase, cell division inhibitor; alpha-beta-a | 95.19 | |
| 3hjn_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.19 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.18 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.18 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.16 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.15 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.12 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 95.12 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 95.08 | |
| 2oze_A | 298 | ORF delta'; para, walker type atpases, DNA segrega | 95.04 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 95.04 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.0 | |
| 3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, | 95.0 | |
| 3la6_A | 286 | Tyrosine-protein kinase WZC; P-loop protein, nucle | 94.98 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 94.98 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 94.97 | |
| 3zq6_A | 324 | Putative arsenical pump-driving ATPase; tail-ancho | 94.94 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.89 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 94.86 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 94.84 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 94.79 | |
| 2gks_A | 546 | Bifunctional SAT/APS kinase; transferase, sulfuryl | 94.73 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 94.71 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 94.68 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 94.65 | |
| 1hyq_A | 263 | MIND, cell division inhibitor (MIND-1); MINC, FTSZ | 94.64 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 94.62 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 94.58 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 94.55 | |
| 3ug7_A | 349 | Arsenical pump-driving ATPase; tail-anchored, memb | 94.52 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 94.51 | |
| 1ihu_A | 589 | Arsenical pump-driving ATPase; aluminum fluoride, | 94.5 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 94.49 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 94.43 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 94.41 | |
| 1byi_A | 224 | Dethiobiotin synthase; biotin synthesis, cyclo-lig | 94.37 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 94.36 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 94.31 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 94.31 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 94.3 | |
| 2woj_A | 354 | ATPase GET3; tail-anchored, membrane protein, targ | 94.3 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 94.3 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 94.29 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 94.27 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 94.25 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 94.25 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 94.25 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 94.24 | |
| 2ph1_A | 262 | Nucleotide-binding protein; alpha-beta protein, st | 94.23 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 94.21 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 94.17 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 94.15 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 94.15 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 94.11 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 94.09 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 94.06 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 94.03 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 93.98 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 93.96 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 93.94 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 93.93 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 93.89 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 93.89 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 93.88 | |
| 2woo_A | 329 | ATPase GET3; tail-anchored, membrane protein, targ | 93.88 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 93.88 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 93.87 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 93.86 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 93.83 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 93.82 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 93.82 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 93.81 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 93.81 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 93.81 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 93.8 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 93.75 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 93.73 |
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-61 Score=538.39 Aligned_cols=323 Identities=58% Similarity=0.915 Sum_probs=301.8
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 3 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+|.++|+.|+++|+++||++++|+||+. ....++.||||+..||.+||+||+|+|++++|+||.+||||||++|+++.+
T Consensus 1721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~d~~l~~gg~p~g~~~e~~~~~~~g~~~~~~~~~~~~ 1799 (2050)
T 3cmu_A 1721 NKQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1799 (2050)
T ss_dssp THHHHHHHHHHHHHHHHCTTSEEEGGGC-TTTCCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCcceEECCCC-cccCCCcccCCcHHHHHhhCCCCCcCCcEEEEECCCCcCHHHHHHHHHHHH
Confidence 6899999999999999999999999985 467899999999999999999999999999999999999999999999999
Q ss_pred hhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhh
Q 017792 83 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 83 ~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
++.||.|.|||.|+.+++.+++++|++.+++++.+|++.++.+++++.+++++.++++||||++++.|+.++++++|+.+
T Consensus 1800 ~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~p~~~~~~~~~~~~ 1879 (2050)
T 3cmu_A 1800 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 1879 (2050)
T ss_dssp HTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHC-------
T ss_pred hhcCCEEEEEcCccccCHHHHHHcCCCHHHeEEecCCcHHHHHHHHHHHHhcCCCcEEEEcchhhcCcHHHhcCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccE
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 242 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~ 242 (366)
.+.|||.|+++||+|...+.+.+|++||+||++.+++. +|++| ++++||++++||+++|+.++|...++++++..|++
T Consensus 1880 ~~~~~r~~~~~~r~~~~~~~~~~~~~~~~~q~r~~~~~-~~~~~-~~~~gg~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 1957 (2050)
T 3cmu_A 1880 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV-MFGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 1957 (2050)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTTCEEEEEECCC---------CC-CCCSSHHHHHHHEEEEEEEEEEEEEEETTEEEEEE
T ss_pred hhHHHHHHHHHHHHHHhhhccCceEEEEhhHhHHHhcc-ccCCC-CCcCCcchhheeeeeeeeeeeecccccCCeeeeeE
Confidence 99999999999999999999999999999999999987 48887 89999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHH
Q 017792 243 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVI 321 (366)
Q Consensus 243 ~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l~~ 321 (366)
++++|+||+++||++.++|+|.|+.||++.+++++++.+.++|+|+|+||+|+++++ ||+++++.||++||+++++|+.
T Consensus 1958 ~~~~~~k~k~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2037 (2050)
T 3cmu_A 1958 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK 2037 (2050)
T ss_dssp EEEEEEEESSSCSCCEEEEEEETTTEECHHHHHHHHHHHTTSSEEETTEEEETTEEEEESHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEEEEecCCCCCcceEEEEEEecCCcCccchHHHHHHhcCcEEeeeeEEEeCCeeccccHHHHHHHHHHCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhc
Q 017792 322 KLREKLV 328 (366)
Q Consensus 322 ~~~~~~~ 328 (366)
++++++.
T Consensus 2038 ~~~~~~~ 2044 (2050)
T 3cmu_A 2038 KVRELLL 2044 (2050)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9999864
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-59 Score=452.08 Aligned_cols=326 Identities=52% Similarity=0.848 Sum_probs=303.1
Q ss_pred chHHHHHHHHHHHHHHhcCCCceEeccCCCCCCC-CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHH
Q 017792 2 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRH-VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
.+|.++|+.|+++|++.||++++|++++. .... ..++|||++.||++||.||+|+|++++|+||||||||||+++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 5 KQKKSVLEKALKRIEENFGKGSIMILGDE-TQVQPVEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSSCCTTCC-SCCCCCCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCCceechhc-cccCCCceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 36889999999999999999999999985 3344 899999999999999889999999999999999999999999999
Q ss_pred HHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccch
Q 017792 81 EAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGD 160 (366)
Q Consensus 81 ~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~ 160 (366)
.+++.++.|+|+++|+.+++.+++++|++++++.+..+.+.++++..+..+++...+++++|||++.+++..++++.+|+
T Consensus 84 ~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~ 163 (356)
T 3hr8_A 84 EAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGD 163 (356)
T ss_dssp HHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCS
T ss_pred HHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchh
Confidence 99998999999999999999999999999999999999999999999998888888999999999999976788888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccc
Q 017792 161 AHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIG 240 (366)
Q Consensus 161 ~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g 240 (366)
.+++.++|.+++.|+.|...+++++++||++||++.+++. +|++| .+++||++|+|++|+||.|++...++++++..|
T Consensus 164 ~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~-~fg~p-~~~~GG~~l~h~~~~rl~l~k~~~~k~g~~~~g 241 (356)
T 3hr8_A 164 MQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGV-MFGSP-ETTTGGLALKFYATMRMEVRRGEPIKEGKDVIG 241 (356)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSS-SSCSC-SSCTHHHHHHHHCSEEEEEEEEEEEEETTEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeecccc-ccCCc-ccCCCcchhhhhCcEEEEEEeccccccCCcccc
Confidence 8888899999999999999999999999999999888775 37666 688999999999999999999888888887778
Q ss_pred cEEEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEe-----cCccc-ccHHHHHHHHhhCHH
Q 017792 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTY-----NDRNF-RGKEAFKQFLVENES 314 (366)
Q Consensus 241 ~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~-----~~~~~-~~~~~~~~~l~~~~~ 314 (366)
+.+.++++|||++||++.+.|+|.|+.||++.+++++++.+.++|.++|+||+| +++++ ||++.++.||++||+
T Consensus 242 ~~~~vkvvKnr~~~~~~~~~f~i~~~~Gi~~~~~~~~~~~~~~~i~~~g~w~~~~~~~~~~~~~~~g~~~~~~~l~~~~~ 321 (356)
T 3hr8_A 242 NVISVKIVKNKVAPPFKTAQTYIIYGKGIDREYELFNIAVNEGIVDRKGSWYYYTTLKGEEVSLGQGSSNAVQFLKDNPE 321 (356)
T ss_dssp EEEEEEEEEESSSCCCCEEEEEEETTTBSCHHHHHHHHHHHTTSSEEETTEEEEECTTSCEEEEEEHHHHHHHHHHHCHH
T ss_pred cEEEEEEEeCCCCCCCceEEEEEeeCCCcChhccHHHHHHHcChhhccCcEEEEEccCCCceeeccCHHHHHHHHHHCHH
Confidence 888999999999999999999999999999999999999999999999999999 88888 999999999999999
Q ss_pred HHHHHHHHHHHHhccC
Q 017792 315 VREELVIKLREKLVVD 330 (366)
Q Consensus 315 ~~~~l~~~~~~~~~~~ 330 (366)
++++|+.++++++...
T Consensus 322 ~~~~~~~~~~~~~~~~ 337 (356)
T 3hr8_A 322 IAGEIERRIREKYGLL 337 (356)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999998653
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-59 Score=515.06 Aligned_cols=323 Identities=58% Similarity=0.915 Sum_probs=299.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 3 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+|.++|..|+++|+|.||+++||++++. .....+.||||++.||.+||.||+|+|++++|+||+|||||||++++++.+
T Consensus 1377 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~tG~~~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~ 1455 (1706)
T 3cmw_A 1377 NKQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1455 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGSEEGGGC-GGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCccEEECCCC-CCCcCceecCCCHHHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5788999999999999999999999985 356789999999999999997899999999999999999999999999999
Q ss_pred hhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhh
Q 017792 83 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 83 ~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
++.|+.|+||+.|+.+++.+++++|++++++++.+|++.++.++.+..+++++.+++|||||++++.|..++++++|+.+
T Consensus 1456 ~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~ 1535 (1706)
T 3cmw_A 1456 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 1535 (1706)
T ss_dssp HHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------
T ss_pred HhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccE
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 242 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~ 242 (366)
.+.+||.|+++|++|...+++.+|++|||||.+.+++. +|++| ++++||++++|||++|+.++|...++++++..|++
T Consensus 1536 ~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~~~~~~~~-~~~~~-~~~~~g~al~~~~~~r~~~~~~~~~~~~~~~~~~~ 1613 (1706)
T 3cmw_A 1536 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV-MFGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 1613 (1706)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECBC---------CC-CCBSSCSHHHHHEEEEEEEEEEEEEEETTEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCcEEEEeeccccccce-ecCCC-ccccCcceeeeeeeeeeeeeeccccccCCeeEeeE
Confidence 99999999999999999999999999999999999987 47777 89999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHH
Q 017792 243 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVI 321 (366)
Q Consensus 243 ~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l~~ 321 (366)
++++|+||+++|||+.++|+|.|+.||++.+++++++.+.++|.|+|+||+|+++++ ||+++++.||++||+++++|+.
T Consensus 1614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1693 (1706)
T 3cmw_A 1614 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK 1693 (1706)
T ss_dssp EEEEEEEESSSCSCCEEEEEEETTTEECHHHHHHHHHHHTTSEEEETTEEEETTEEEEESHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEEEecccCCCCcceEEEEEEecCCcCccchHHHHHHhcCcEEEeeeeEEeCCeeccccHHHHHHHHHHCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhc
Q 017792 322 KLREKLV 328 (366)
Q Consensus 322 ~~~~~~~ 328 (366)
++++++.
T Consensus 1694 ~~~~~~~ 1700 (1706)
T 3cmw_A 1694 KVRELLL 1700 (1706)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9999864
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-53 Score=411.71 Aligned_cols=325 Identities=50% Similarity=0.847 Sum_probs=275.0
Q ss_pred chHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 2 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
.+|.++|+.++++|++.||++++|++++. ......++|||++.||.+|++||+|+|++++|+|+||+||||||++++..
T Consensus 19 ~~~~~~l~~~~~~i~~~~~~~~~~~l~~~-~~~~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 19 KERSKAIETAMSQIEKAFGKGSIMKLGAE-SKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTSSCCTTSC-CCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcceecccc-ccccCceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 36889999999999999999999999974 45678999999999999998789999999999999999999999999999
Q ss_pred HhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchh
Q 017792 82 AQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDA 161 (366)
Q Consensus 82 ~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~ 161 (366)
++..++.|+|++.|+.+++.+++++|++++++.+.++.+.+++++.+..+++...+++|||||++.+.+..++++.+++.
T Consensus 98 ~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~ 177 (366)
T 1xp8_A 98 AQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDS 177 (366)
T ss_dssp HHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC-------
T ss_pred HHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccc
Confidence 98888899999999999988899999999999999999999999999988888889999999999998656665544443
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEece-eecCccccc
Q 017792 162 HMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGL-VKKGEETIG 240 (366)
Q Consensus 162 ~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~-~~~~~~~~g 240 (366)
+.+.++|.+.+.+++|...+++++++||++||.+..++. .|++| ..+.||.+|+|+||.|+.|++... ++.+++..|
T Consensus 178 ~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~-~fg~p-~~~~gg~al~~~a~~rl~L~r~~~~~k~~~~~~g 255 (366)
T 1xp8_A 178 LPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGV-MYGNP-ETTTGGRALKFYASVRLDVRKIGQPTKVGNDAVA 255 (366)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC-----------------CHHHHHHHCSEEEEEEEESCCC------CE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCc-ccCCc-cccCCcchhhheeeEEEEEEecchhcccCccccC
Confidence 333566788899999999999999999999999987764 25555 678899999999999999999876 666655567
Q ss_pred cEEEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHH
Q 017792 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREEL 319 (366)
Q Consensus 241 ~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l 319 (366)
+.+.++++|||++||+..+.|+|.|+.|+.+.+++++++.+.++|.++|+||+|.++++ ||++.+++||++||+++++|
T Consensus 256 ~~~~v~v~Knr~~p~~~~~~f~i~~~~Gi~~~~~~l~~~~~~~~~~k~g~w~~~~~~~~~~g~~~~~~~l~~~~~~~~~~ 335 (366)
T 1xp8_A 256 NTVKIKTVKNKVAAPFKEVELALVYGKGFDQLSDLVGLAADMDIIKKAGSFYSYGDERIGQGKEKTIAYIAERPEMEQEI 335 (366)
T ss_dssp EEEEEEEEEESSSCCCCEEEEEEETTTEECHHHHHHHHHHHTTSSEEETTEEESSSSEEEESHHHHHHHHTTCHHHHHHH
T ss_pred CEEEEEEEcCCCCCCCceEEEEEEeCCCcccchhHHHHHHHhCeeeccCceeeECCeEecchHHHHHHHHHhCHHHHHHH
Confidence 77789999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHhcc
Q 017792 320 VIKLREKLVV 329 (366)
Q Consensus 320 ~~~~~~~~~~ 329 (366)
+.++++++..
T Consensus 336 ~~~~~~~~~~ 345 (366)
T 1xp8_A 336 RDRVMAAIRA 345 (366)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHhcC
Confidence 9999999764
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-53 Score=409.88 Aligned_cols=323 Identities=58% Similarity=0.915 Sum_probs=279.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 3 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+|.++|+.++++|++.||++++|.+++. ......++|||++.||.+|+.||+|+|++++|+|+||+||||||++++..+
T Consensus 9 ~~~~~l~~~~~~i~~~~~~~~~~~l~~~-~~~~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 9 NKQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp -CHHHHHHHHHHHHHHHCTTSSCCTTCC-CBCCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCceEcccc-ccccCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999999984 556789999999999999976899999999999999999999999999999
Q ss_pred hhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhh
Q 017792 83 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 83 ~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
+..++.|+|+++|+++++.+++++|++++++.+.++.+.+++++.+..+++...++++|||+++.+.+..++++.+++..
T Consensus 88 ~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~ 167 (356)
T 1u94_A 88 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 167 (356)
T ss_dssp HHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC-----
T ss_pred HHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccch
Confidence 98888999999999999888899999999999999999999999888888778899999999999986555555444433
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccE
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 242 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~ 242 (366)
.+.++|.+.+.+++|...+++++++||++||.++.++. +|++| ..+.||++|+|+||.|+.+++.+.++.+++..+.+
T Consensus 168 ~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~-~fg~~-~~~~gG~~l~~~advrl~l~r~~~~k~g~~~~g~~ 245 (356)
T 1u94_A 168 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV-MFGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 245 (356)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC----------------CTTCSHHHHHCSEEEEEEEEEEEESSSSEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCc-ccCCC-cccCCCcceeeeccEEEEEEEeeeeccCccccCcE
Confidence 33567788899999999999999999999999988765 25555 67889999999999999999998888776666777
Q ss_pred EEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHH
Q 017792 243 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVI 321 (366)
Q Consensus 243 ~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l~~ 321 (366)
+.++|+|||.+||+..+.|++.++.||.+.+++++++.+.+++.++|+||+|.++++ |+++.++.||++||+++++|+.
T Consensus 246 ~~~~i~K~r~~p~~~~~~f~i~~~~Gi~~~~~~l~~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~i~~ 325 (356)
T 1u94_A 246 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK 325 (356)
T ss_dssp EEEEEEEESSBCSCCEEEEEEETTTEECHHHHHHHHHHHTTSEECCTTCEEETTEEEESSHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEEECCCccCCCCCcEEEEEEcCCCcCcCcchHHHHHHhchhcCcceeEeeCCccHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhc
Q 017792 322 KLREKLV 328 (366)
Q Consensus 322 ~~~~~~~ 328 (366)
+++++++
T Consensus 326 ~~~~~~~ 332 (356)
T 1u94_A 326 KVRELLL 332 (356)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 9999985
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-53 Score=405.85 Aligned_cols=324 Identities=54% Similarity=0.935 Sum_probs=284.3
Q ss_pred chHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 2 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
.+|.++|+.|+++|++.||++++|.+++. ......++|||++.||.+|+.||+++|++++|+|+||+|||||+++++..
T Consensus 6 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~~~~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 6 PDREKALELAMAQIDKNFGKGSVMRLGEE-VRQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTSSCCTTCC-CCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCceecccc-ccccCCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999999984 55678999999999999998789999999999999999999999999999
Q ss_pred HhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchh
Q 017792 82 AQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDA 161 (366)
Q Consensus 82 ~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~ 161 (366)
+++.++.|+|++.|+.+++.+++++|++++++.+.++.+.++++..+..++....++++||||++.+.+..++++.+|+.
T Consensus 85 ~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 85 AQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp HHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred HHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence 99889999999999999988899999999999999999999999998888888889999999999998655666555544
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCcccccc
Q 017792 162 HMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGS 241 (366)
Q Consensus 162 ~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~ 241 (366)
+.+.++|.+.+.+++|...++++|++||++||.++.++. .|++| ..+.||++|+|+||.|+.+++.+.++.+++..|.
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~-~~~~p-~~~~gg~~l~~~ad~~l~lrr~~~~k~g~~~~g~ 242 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGV-MFGSP-ETTTGGKALKFYASVRLDVRRIETLKDGTDAVGN 242 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------------CCSSHHHHHHHCSEEEEEEEEEEECSSSSCCEE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCc-ccCCC-cccCCchHhhhccceEEEEEEeeeeecCccccCC
Confidence 333566788899999998889999999999999987664 25555 6788999999999999999999888877766677
Q ss_pred EEEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHH
Q 017792 242 QIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELV 320 (366)
Q Consensus 242 ~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l~ 320 (366)
++.++++|||.+||+..+.|++.++.||.+.+++++++.+.+++.++|+||+|.++++ |+++.++.||++||+++++|+
T Consensus 243 ~~~~~i~K~~~~p~~~~~~fdi~~~~Gi~~~~~~l~~g~~~~~~~~~g~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~i~ 322 (349)
T 2zr9_A 243 RTRVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGKENARKFLLENTDVANEIE 322 (349)
T ss_dssp EEEEEEEEESSSCCCCEEEEEEETTSCBCHHHHHHHHHHHTTSSEEETTEEEETTEEEEESHHHHHHHHHHCHHHHHHHH
T ss_pred EEEEEeCCCccCCCCceEEEEEEeCCCcCccccHHHHHHhhchhcCcceEEEEcCccHHhHHHHHHHHHhhCHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHhc
Q 017792 321 IKLREKLV 328 (366)
Q Consensus 321 ~~~~~~~~ 328 (366)
.++++++.
T Consensus 323 ~~~~~~~~ 330 (349)
T 2zr9_A 323 KKIKEKLG 330 (349)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHcC
Confidence 99999864
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-50 Score=444.86 Aligned_cols=324 Identities=57% Similarity=0.912 Sum_probs=301.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 3 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+|.++|+.|++++++.||++++|++++. .....+.+|||++.||.+||+||+++|+.++|+||||+|||||+.+++..+
T Consensus 1373 ~~~~~~~~~~~~~~~~~~~~si~~~~~~-~~~~~~~isTG~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1373 NKQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp THHHHHHHHHHHHHHHHCTTSEEEGGGC-TTTSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcCCcceeecccc-cccccccccCCCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999999985 445688999999999999998999999999999999999999999999999
Q ss_pred hhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhh
Q 017792 83 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 83 ~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
+..|+.|+|++.++.+.+.+++.+|++++++.+.++.+.++++..+..+++...++++|||++.++.|..+..+++++..
T Consensus 1452 ~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~ 1531 (2050)
T 3cmu_A 1452 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 1531 (2050)
T ss_dssp HTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCC
T ss_pred HHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCCEEEEcChhHhcccccccccccccc
Confidence 99999999999999999988999999999999999999999999999999889999999999999997655555555544
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccE
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 242 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~ 242 (366)
.+.++|.+++.|++|...+.+++++||++|+.+..++. .|++| .+++||+++.|++++|+.++|...++++++..|++
T Consensus 1532 ~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq~~~~~g~-~fg~~-~~t~gg~al~~~~s~rl~~~~~~~~k~~~~~~g~~ 1609 (2050)
T 3cmu_A 1532 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV-MFGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 1609 (2050)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTTCEEEEEECEEECTTC-CSSCC-EEESSHHHHHHHEEEEEEEEEEEEEEETTEEEEEE
T ss_pred cchHHHHHHHHHHHHHHHHHhCCcEEEEEccccccchh-hcCCC-cccCCCceeeeeeeEEEEeecccccccccccccce
Confidence 44578889999999999999999999999999999886 37777 88999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHH
Q 017792 243 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVI 321 (366)
Q Consensus 243 ~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l~~ 321 (366)
++++|+|||.+||++.++|+|.|+.||++.++++|++.+.+++.|+|+||+|+++++ ||++++++||++||+++++|+.
T Consensus 1610 ~~~~v~k~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1689 (2050)
T 3cmu_A 1610 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK 1689 (2050)
T ss_dssp EEEEEEEESSSCSCCEEEEEEETTTEECHHHHHHHHHHHTTSSEEETTEEEETTEEEEESHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEEEEEccCCCCcceeEEEEecCCccccchhHHHHHhhcCeEeccCcEEEECCcCccchHHHHHHHHHHCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhcc
Q 017792 322 KLREKLVV 329 (366)
Q Consensus 322 ~~~~~~~~ 329 (366)
+|++++..
T Consensus 1690 ~~~~~~~~ 1697 (2050)
T 3cmu_A 1690 KVRELLLS 1697 (2050)
T ss_dssp HHHHHHCS
T ss_pred HHHHHHhc
Confidence 99998743
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-49 Score=368.57 Aligned_cols=283 Identities=25% Similarity=0.413 Sum_probs=219.7
Q ss_pred CCCcccCChHHHHHhhC---CCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCeEEEEeCCCCCCHHHHhhcccc
Q 017792 35 HVPVVSTGSFALDIALG---TGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDAEHALDPSLAETIGVK 109 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~---~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~--gg~vl~id~e~~~~~~~~~~ig~~ 109 (366)
.++++|||+++||++|| +||+|+| +++|+||||+||||||++++..+++. ++.|+|+|+|+++++.+++++|++
T Consensus 3 ~~~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd 81 (333)
T 3io5_A 3 HMDVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVD 81 (333)
T ss_dssp ---CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCC
T ss_pred CCCEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCC
Confidence 46799999999999998 5999999 99999999999999999999999886 789999999999999999999999
Q ss_pred cCcceecCCCCHHHH-HHHHHHH--HhcCCceEEEEecccccCCCCccCCccchhhHH--HHHHHHHHHHHHHHHHhhhc
Q 017792 110 TENLLLAQPDCGEQA-LSLVDTL--IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMA--MQARLMSQALRKLSHSLSLS 184 (366)
Q Consensus 110 ~~~~~~~~~~~~e~~-l~~~~~~--~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~--~~ar~l~~~L~~L~~~l~~~ 184 (366)
++++++.++.+.+++ ++.+..+ +++..++++||||++++++..++++++++.+.+ .++|.++++|++|...++++
T Consensus 82 ~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~ 161 (333)
T 3io5_A 82 PERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTK 161 (333)
T ss_dssp GGGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999 8887776 677889999999999999878899888877666 78999999999999999999
Q ss_pred CcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEE
Q 017792 185 QTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELE 264 (366)
Q Consensus 185 ~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~ 264 (366)
|++||+|||+++ ++. +|++|. ++||+++ |+|+.||.+++...++++++..|+++.++++|+|+.+|....+|+|.
T Consensus 162 ~i~vi~tNQV~k-~G~-~fg~p~--~~GG~~l-~~ss~Rl~lrk~~~ik~~~~~~G~~~~v~~~k~kv~k~k~~~~~~i~ 236 (333)
T 3io5_A 162 NIPCIAINHTYE-TQE-MFSKTV--MGGGTGP-MYSADTVFIIGKRQIKDGSDLQGYQFVLNVEKSRTVKEKSKFFIDVK 236 (333)
T ss_dssp TCEEEEEEEC-------------------CCG-GGGSSEEEEEEEC----------CEEEEEEEECSSBCTTCEEEEEBC
T ss_pred CCEEEEECCeee-cCc-ccCCCC--CCCccee-eeeeEEEEEEeccccccCCccEEeEEEEeEEEEEEccCCcCCcEEEE
Confidence 999999999998 665 477773 4999999 99999999999999999999999999999999999999888899999
Q ss_pred eCCCCCchhhHHHHHHhcCcccc-cceeEEec--C----------cccccH-----HHHHHHHhhCHHHHHHHHHHHH
Q 017792 265 FGKGISRESEIIDLALKHKFASK-AGAMFTYN--D----------RNFRGK-----EAFKQFLVENESVREELVIKLR 324 (366)
Q Consensus 265 ~~~Gi~~~~~i~~~~~~~~~i~~-~g~~~~~~--~----------~~~~~~-----~~~~~~l~~~~~~~~~l~~~~~ 324 (366)
|+.||++.++++++|.+.++|.| +|+||+|+ + ++++.+ +.|.. |-+|+++.+.|+.+..
T Consensus 237 ~~~Gi~~~~~lld~a~~~gii~k~~g~wy~~~~~~~~~G~~~~~ek~~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~ 313 (333)
T 3io5_A 237 FDGGIDPYSGLLDMALELGFVVKPKNGWYAREFLDEETGEMIREEKSWRAKDTNCTTFWGP-LFKHQPFRDAIKRAYQ 313 (333)
T ss_dssp TTSCBCTTTTHHHHHHHHTSEECSSTTEEEEEEEETTTTEEEECSCCEEGGGGSSHHHHHH-HHTCHHHHHHHHHHHB
T ss_pred ecCCCChHHHHHHHHHhCCeEEcCCCceEEeccCCccccccHHHHHHHHhhcCchHHHHHH-HhcCchHHHHHHHhhC
Confidence 99999999999999999999998 99999994 2 223333 33333 4567889998887763
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-47 Score=420.06 Aligned_cols=325 Identities=57% Similarity=0.911 Sum_probs=296.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 3 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+|.++|+.|+++|++.||++++|.|++. ......++|||++.||.+|++||+|+|++++|+|+||+|||||+++++..+
T Consensus 329 ~~~~~l~~a~~~i~~~fg~~~~~~l~~~-~~~~~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~ 407 (1706)
T 3cmw_A 329 NKQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGSEEGGGC-GGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCcceecccc-ccccCceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999999999984 446789999999999999988999999999999999999999999999999
Q ss_pred hhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhh
Q 017792 83 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 162 (366)
Q Consensus 83 ~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~ 162 (366)
+..++.|+|+++|+++++.+++++|++.+++.+.++.+.++++..+..+++...+++|||||++.+.+..++++.+|+.+
T Consensus 408 ~~~G~~vlyis~E~s~~~~~a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~ 487 (1706)
T 3cmw_A 408 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 487 (1706)
T ss_dssp HHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCC
T ss_pred HHhCCCeEEEEccCchHHHHHHHcCCCHHHeEEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHhhccccccccccccc
Confidence 99999999999999999988999999999999999999999999998888888999999999999986555555555544
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccE
Q 017792 163 MAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQ 242 (366)
Q Consensus 163 ~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~ 242 (366)
.+.++|.+++.+++|...+++.|++||++||+++.++. .|++| ..+.||.+|+|+||.|+.+++.+.++++++..+.+
T Consensus 488 ~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~-~fg~~-~~p~gg~ale~~ADv~L~L~R~~~~~~g~~~~~~~ 565 (1706)
T 3cmw_A 488 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV-MFGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 565 (1706)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTC-CSSCC-EEESSCSHHHHHEEEEEEEEEEEEEEETTEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCCEEEEEeeccccccc-ccCCC-ccCCCCcceeeeCCEEEEEEeccccccCccccCcE
Confidence 45677889999999999999999999999999998775 25555 78899999999999999999988777776655777
Q ss_pred EEEEEEecCCCCCCCeeEEEEEeCCCCCchhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHH
Q 017792 243 IAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVI 321 (366)
Q Consensus 243 ~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l~~ 321 (366)
+.++++|||.+||++.+.|.|.|+.||++.+++++++.+.++|.++|+||+|.++++ ||++.+..||++||.+.++|+.
T Consensus 566 ~~l~V~KnR~gp~~~~~~F~I~~~~Gi~~~~~~~d~a~~~~~i~k~g~w~~y~~~~i~~g~~~~~~~l~~~p~l~~~i~~ 645 (1706)
T 3cmw_A 566 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK 645 (1706)
T ss_dssp EEEEEEEESSSCSCCEEEEEEETTTEECHHHHHHHHHHHTTSEEEETTEEEETTEEEEESHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEEEEecCCCCCCCeEEEEEecCCCccccccHHHhhhhcCceeccccEEeeCCceecccHHHHHHHHhhCHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhccC
Q 017792 322 KLREKLVVD 330 (366)
Q Consensus 322 ~~~~~~~~~ 330 (366)
++++++++.
T Consensus 646 ~~~~~~~~~ 654 (1706)
T 3cmw_A 646 KVRELLLSN 654 (1706)
T ss_dssp HHHHHHCSS
T ss_pred HHHHHhccC
Confidence 999998864
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-31 Score=253.02 Aligned_cols=246 Identities=26% Similarity=0.404 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 5 DLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
+++++.|.+.+++.|++++.|.-. ..+..++|||++.||.+|+ ||+++|++++|+|+||+||||||++++..++.
T Consensus 74 ~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~i~TG~~~LD~~Lg-GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~ 148 (343)
T 1v5w_A 74 DKIKEAANKLIEPGFLTAFEYSEK----RKMVFHITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQL 148 (343)
T ss_dssp ------------CCSEEHHHHHHH----GGGCCCBCCSCHHHHHHTT-SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcccCCCcHHHHHhh----hcccceeecCChhHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 457778888888888887766532 2457899999999999999 99999999999999999999999999998654
Q ss_pred ------cCCeEEEEeCCCCCCHH----HHhhccccc----CcceecCCCCHHHHH---HHHHHHHhc--CCceEEEEecc
Q 017792 85 ------QGGYCVFIDAEHALDPS----LAETIGVKT----ENLLLAQPDCGEQAL---SLVDTLIRS--GSVDVVVVDSV 145 (366)
Q Consensus 85 ------~gg~vl~id~e~~~~~~----~~~~ig~~~----~~~~~~~~~~~e~~l---~~~~~~~~~--~~~~lvviDsl 145 (366)
.++.|+|+++|+.+++. +++++|+++ +++.+.++.+.++++ ..+..++.. ..++++||||+
T Consensus 149 ~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl 228 (343)
T 1v5w_A 149 PGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSI 228 (343)
T ss_dssp CBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETS
T ss_pred ccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEech
Confidence 46789999999987753 566788876 467777776666544 445566666 78999999999
Q ss_pred cccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccc-cC-CCCeeeccCCceeeeeceEE
Q 017792 146 AALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTF-GF-GGPTEVTCGGNALKFYASVR 223 (366)
Q Consensus 146 ~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~-~~-~~~~~~~~gG~~l~~~ad~~ 223 (366)
+.++ ..++.+. ++ .....+.+.+.++.|...++++|++||++||.++..+.. .| ++| ..++||+.|+|++|.|
T Consensus 229 ~~l~-~~~~~~~-g~--~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~g~~-~~~~gg~~i~~~ad~~ 303 (343)
T 1v5w_A 229 MALF-RVDFSGR-GE--LAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADP-KKPIGGHILAHASTTR 303 (343)
T ss_dssp GGGH-HHHCCGG-GC--HHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--------------------CCTTTTSSSEE
T ss_pred HHHH-HHHhccc-cc--HHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceecCCCccccCCCC-CcCCchHHHHHhCCEE
Confidence 9998 4444321 11 111223466677777777788999999999999876542 13 233 5788999999999999
Q ss_pred EEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCCCCc
Q 017792 224 LNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISR 271 (366)
Q Consensus 224 i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~ 271 (366)
|.|++.. +..+.+++.|||++|. ..+.|.|+ +.||..
T Consensus 304 l~l~r~~---------~~~r~~~v~K~r~~p~-~~~~f~I~-~~Gi~~ 340 (343)
T 1v5w_A 304 ISLRKGR---------GELRIAKIYDSPEMPE-NEATFAIT-AGGIGD 340 (343)
T ss_dssp EEEEESS---------TTEEEEEEEECTTCCS-SCEEEEEE-TTEEEE
T ss_pred EEEEEcC---------CCEEEEEEEECCCCCC-eeEEEEEe-CCCccC
Confidence 9999753 2345799999999854 45799998 788753
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=248.57 Aligned_cols=245 Identities=25% Similarity=0.411 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 5 DLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
+++++.|.+.+++.|++++.|.-. .....++|||++.||.+|+ ||+++|++++|+|+||+|||||+++++..++.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~TG~~~LD~~L~-GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~ 133 (324)
T 2z43_A 59 QKIIKEARDALDIRFKTALEVKKE----RMNVKKISTGSQALDGLLA-GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQL 133 (324)
T ss_dssp -------------CCCCHHHHHHH----HCSCCEECCSCHHHHHHTT-TSEETTSEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcccCccchhhhhhh----hccCCcccCCchhHHHhcC-CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhc
Confidence 457788888899999988877532 2467899999999999999 99999999999999999999999999998765
Q ss_pred c------CCeEEEEeCCCCCCHH----HHhhcccccC----cceecCCCCHHH---HHHHHHHHHhc-CCceEEEEeccc
Q 017792 85 Q------GGYCVFIDAEHALDPS----LAETIGVKTE----NLLLAQPDCGEQ---ALSLVDTLIRS-GSVDVVVVDSVA 146 (366)
Q Consensus 85 ~------gg~vl~id~e~~~~~~----~~~~ig~~~~----~~~~~~~~~~e~---~l~~~~~~~~~-~~~~lvviDsl~ 146 (366)
. ++.|+|+++|+.+++. +++++|++++ ++.+.++.+.++ ++..+..++.. ..++++||||++
T Consensus 134 ~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 134 PPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp CGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred ccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 4 6789999999987643 5667888764 677777777775 45556666666 789999999999
Q ss_pred ccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEE
Q 017792 147 ALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNI 226 (366)
Q Consensus 147 ~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l 226 (366)
.++ ..++.+. ++ .....+.+.+.++.|...+++++++||++||.++..+. .|+++ ..+.+|..|+|++|.||.|
T Consensus 214 ~l~-~~~~~~~-g~--~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~-~~~~~-~~~~gg~~l~~~~d~~l~l 287 (324)
T 2z43_A 214 SHF-RAEYPGR-EN--LAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDM-FYGDP-TVAVGGHTLYHVPGIRIQL 287 (324)
T ss_dssp HHH-HHHSCTT-TS--HHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC--------------------------CEEEEE
T ss_pred HHh-hhhhcCc-cc--HHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecCCC-cCCCC-CCCCchHHHHhhCcEEEEE
Confidence 987 3333321 11 11122346667777777778899999999999987653 14334 5788999999999999999
Q ss_pred EEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCCCCc
Q 017792 227 KRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISR 271 (366)
Q Consensus 227 ~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~ 271 (366)
++.. +..+.+++.|||++|. ..+.|.|. +.||..
T Consensus 288 ~r~~---------~~~r~~~v~k~~~~p~-~~~~f~I~-~~Gi~~ 321 (324)
T 2z43_A 288 KKSR---------GNRRIARVVDAPHLPE-GEVVFALT-EEGIRD 321 (324)
T ss_dssp EECS---------TTEEEEEEEECSSSCC-EEEEEEEE-TTEEEC
T ss_pred EEcC---------CCeEEEEEEECCCCCc-eEEEEEEe-CCCccc
Confidence 9753 2344799999999854 45789998 778753
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-30 Score=244.32 Aligned_cols=244 Identities=27% Similarity=0.389 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 5 DLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
.++++.|.+.+++.|++++.|.-. .....++|||++.||.+|+ ||+++|++++|+|+||+||||||++++..++.
T Consensus 50 ~~~i~~a~~~~~~~~~~~~~~~~~----~~~~~~i~TG~~~LD~~l~-GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l 124 (322)
T 2i1q_A 50 AKMIMGARDLCDLGFKSGIDLLKQ----RSTVWKLSTSSSELDSVLG-GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQN 124 (322)
T ss_dssp HHHHHHHHHHTTCSCCCTHHHHHH----HTTCCEECCSCHHHHHHTT-SSEETTEEEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhhcCCcHHHHHHH----hccCCeecCCChhHHHhcC-CCccCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 367888888888889988877422 2467899999999999999 99999999999999999999999999987532
Q ss_pred ------------cC----CeEEEEeCCCCCCHH----HHhhccccc----CcceecCCCCHHH---HHHHHHHHHhc-CC
Q 017792 85 ------------QG----GYCVFIDAEHALDPS----LAETIGVKT----ENLLLAQPDCGEQ---ALSLVDTLIRS-GS 136 (366)
Q Consensus 85 ------------~g----g~vl~id~e~~~~~~----~~~~ig~~~----~~~~~~~~~~~e~---~l~~~~~~~~~-~~ 136 (366)
.| +.|+|+++|+.+++. +++++|+++ +++.+.++.+.++ ++..+..++.. .+
T Consensus 125 ~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~ 204 (322)
T 2i1q_A 125 PEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNN 204 (322)
T ss_dssp GGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCE
T ss_pred cccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccC
Confidence 24 689999999987653 566778876 4677777788775 44455566666 78
Q ss_pred ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCcee
Q 017792 137 VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNAL 216 (366)
Q Consensus 137 ~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l 216 (366)
++++||||++.++ ..++.+. ++ .....+.+.+.++.|...+++++++||++||.++..+. .|+++ ..+.||..|
T Consensus 205 ~~lvVIDsl~~l~-~~~~~~~-~~--~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~-~~g~~-~~~~g~~~~ 278 (322)
T 2i1q_A 205 IKLVVIDSLTSTF-RNEYTGR-GK--LAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDA-FFGMA-EQAIGGHIV 278 (322)
T ss_dssp EEEEEEECSSHHH-HHHCCCT-TS--HHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC--------C-CEESSHHHH
T ss_pred ccEEEEECcHHHH-HHHhcCC-cc--HHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCC-CCCCC-cCCCCcHHH
Confidence 9999999999987 3333321 11 11122346677778887778899999999999887553 24344 578899999
Q ss_pred eeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCCCC
Q 017792 217 KFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGIS 270 (366)
Q Consensus 217 ~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~ 270 (366)
+|++|.||.|++.. + ..+.+++.|||++|.+ .+.|.|. +.||.
T Consensus 279 ~~~~d~~i~l~~~~----~-----~~r~~~v~k~~~~p~~-~~~f~I~-~~Gi~ 321 (322)
T 2i1q_A 279 GHAATFRFFVRKGK----G-----DKRVAKLYDSPHLPDA-EAIFRIT-EKGIQ 321 (322)
T ss_dssp HHHCSEEEEEEECS----T-----TEEEEEEEECSSSCCE-EEEEEEE-TTEEE
T ss_pred HhcCcEEEEEEecC----C-----CeEEEEEEECCCCCCe-EEEEEEe-CCCcC
Confidence 99999999999753 1 2337999999998654 5689998 77864
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-29 Score=242.38 Aligned_cols=223 Identities=26% Similarity=0.453 Sum_probs=155.0
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEeCCCCCCH----HHH
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDP----SLA 103 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~------~gg~vl~id~e~~~~~----~~~ 103 (366)
....+++||++.||++|+ |||++|++++|+||||||||||+++++..... .++.++|+++++.+.. .++
T Consensus 155 ~~~~~i~TG~~~LD~lLg-GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a 233 (400)
T 3lda_A 155 SELICLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIA 233 (400)
T ss_dssp HTSCEECCSCHHHHHHTT-TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHH
T ss_pred ccCCccccCChhHHHHhc-CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHH
Confidence 357899999999999999 99999999999999999999999998866553 2567999999998764 356
Q ss_pred hhcccccC----cceecCCCCHHHHH---HHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHH
Q 017792 104 ETIGVKTE----NLLLAQPDCGEQAL---SLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 176 (366)
Q Consensus 104 ~~ig~~~~----~~~~~~~~~~e~~l---~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~ 176 (366)
+++|++++ ++.+....+.++.. ..+...+....+++++||+++.+++ .++++. |+ .+.+.+.+...++.
T Consensus 234 ~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~-~~~sg~-g~--l~~Rq~~l~~il~~ 309 (400)
T 3lda_A 234 QRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR-TDFSGR-GE--LSARQMHLAKFMRA 309 (400)
T ss_dssp HHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC--------CC--HHHHHHHHHHHHHH
T ss_pred HHcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc-hhhcCc-cc--hHHHHHHHHHHHHH
Confidence 77888776 66777666665544 3344455566899999999999984 455431 11 12233444555556
Q ss_pred HHHHhhhcCcEEEEEecCCcccccc-cCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCC
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTF-GFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP 255 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~-~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~ 255 (366)
|....+++|+|||+++|++...+.. .|.++...+.||..|+|++|+||.|++.. + ..+.+++.|+|+.|+
T Consensus 310 L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~----g-----~~R~l~v~K~R~~p~ 380 (400)
T 3lda_A 310 LQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK----G-----CQRLCKVVDSPCLPE 380 (400)
T ss_dssp HHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS----T-----TEEEEEEEECSSSCS
T ss_pred HHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC----C-----CcEEEEEEcCCCCCC
Confidence 6666677899999999997654431 13333367889999999999999999853 1 234799999999888
Q ss_pred CCeeEEEEEeCCCCCch
Q 017792 256 FKTAQFELEFGKGISRE 272 (366)
Q Consensus 256 ~~~~~~~i~~~~Gi~~~ 272 (366)
.. +.|.|. +.||...
T Consensus 381 ~e-~~F~It-~~Gi~~~ 395 (400)
T 3lda_A 381 AE-CVFAIY-EDGVGDP 395 (400)
T ss_dssp CE-EEEEEE-TTEEECC
T ss_pred Cc-eEEEEe-CCccccc
Confidence 75 899998 8888653
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.1e-28 Score=218.18 Aligned_cols=221 Identities=24% Similarity=0.403 Sum_probs=146.4
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEeCCCCCCH----HHHh
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDP----SLAE 104 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~------~gg~vl~id~e~~~~~----~~~~ 104 (366)
+++++|||++.||.+|+ ||+++|++++|+||||||||||+++++..+.. .++.++|++++..+.. .+++
T Consensus 2 ~~~~i~tG~~~LD~~l~-ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~ 80 (243)
T 1n0w_A 2 EIIQITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE 80 (243)
T ss_dssp CCCEECCSCHHHHHHTT-TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHH
T ss_pred CceEecCCChHHHHhhc-CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHH
Confidence 46789999999999999 99999999999999999999999999997543 2568999999987553 3566
Q ss_pred hccccc----CcceecCCCCHHHHHHH---HHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHH
Q 017792 105 TIGVKT----ENLLLAQPDCGEQALSL---VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 177 (366)
Q Consensus 105 ~ig~~~----~~~~~~~~~~~e~~l~~---~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L 177 (366)
++++++ +++.+..+.+.++.... +...+....+++++||+++.+.. ..+++. ++ ...+.+.+...+..|
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~-~~~~~~-~~--~~~r~~~~~~~~~~l 156 (243)
T 1n0w_A 81 RYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYR-TDYSGR-GE--LSARQMHLARFLRML 156 (243)
T ss_dssp HTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC---------C--HHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHhhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH-HHhcCC-cc--HHHHHHHHHHHHHHH
Confidence 788877 56777667776665433 45555667899999999998873 333321 11 111222344555566
Q ss_pred HHHhhhcCcEEEEEecCCccccccc-CCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCC
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFG-FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPF 256 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~-~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~ 256 (366)
...+++.|+|||+++|..+..+... +.+....++||..|+++||.++.|+++. +..+.+.+.|+|++++.
T Consensus 157 ~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~---------~~~r~l~v~K~r~~~~~ 227 (243)
T 1n0w_A 157 LRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR---------GETRICKIYDSPCLPEA 227 (243)
T ss_dssp HHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEECS---------TTEEEEEECCBTTBSCE
T ss_pred HHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcC---------CCeEEEEEEECCCCCCC
Confidence 6666778999999999987754310 2122246788999999999999999752 22347999999998764
Q ss_pred CeeEEEEEeCCCCCc
Q 017792 257 KTAQFELEFGKGISR 271 (366)
Q Consensus 257 ~~~~~~i~~~~Gi~~ 271 (366)
...|.|. +.||..
T Consensus 228 -~~~f~I~-~~Gi~~ 240 (243)
T 1n0w_A 228 -EAMFAIN-ADGVGD 240 (243)
T ss_dssp -EEEEEEE-TTEEEC
T ss_pred -eEEEEEe-CCcccc
Confidence 4789998 888753
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=234.86 Aligned_cols=245 Identities=25% Similarity=0.388 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHHH-hcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 4 KDLALQQALDQITS-SFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 4 ~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+++++.+.+.++. .|.+++.++-. .....++|||++.||.+|+ ||+++|++++|+||||||||||++++++.+
T Consensus 81 ~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~isTG~~~LD~lL~-ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 81 ALKIIQAARKAANLGTFMRADEYLKK----RATIGRISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHHHHHHCSTTSCEEHHHHHHH----HHTCCEECCSCHHHHHHHT-SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhccccCCccHHHHHhh----hccCCeecCCCHHHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34566666666665 56555444321 2457899999999999999 999999999999999999999999999998
Q ss_pred hhc------CCeEEEEeCCCCCCHH----HHhhccccc----CcceecCCCCH---HHHHHHHHHHHhc-----CCceEE
Q 017792 83 QRQ------GGYCVFIDAEHALDPS----LAETIGVKT----ENLLLAQPDCG---EQALSLVDTLIRS-----GSVDVV 140 (366)
Q Consensus 83 ~~~------gg~vl~id~e~~~~~~----~~~~ig~~~----~~~~~~~~~~~---e~~l~~~~~~~~~-----~~~~lv 140 (366)
+.. +|.|+|+++++.+.+. +++..++.+ +++.+....+. .+.+..+..++.. .+++++
T Consensus 156 ~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 156 QLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp TSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred ccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 532 3688999999886532 344455443 45555544332 3456666666665 689999
Q ss_pred EEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeec
Q 017792 141 VVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYA 220 (366)
Q Consensus 141 viDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~a 220 (366)
|+|++++++ ..+..+. ++ .....+.+.+.++.|...++++|+|||++||.+...+. .++++ ..+.+|..|+|++
T Consensus 236 IlDs~ta~l-d~~~~~~-~~--~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~-~~~~~-~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 236 IVDSLTSHF-RSEYIGR-GA--LAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDA-FFGDP-TRPIGGHILAHSA 309 (349)
T ss_dssp EEETSSTTH-HHHCCST-TT--HHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCCCTTC
T ss_pred EEeCchHhh-hhhhccc-cc--HHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccccccc-ccCCc-cccCCcceEeecC
Confidence 999999987 3333221 11 11222334455666666667789999999999876543 13333 6789999999999
Q ss_pred eEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCCCC
Q 017792 221 SVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGIS 270 (366)
Q Consensus 221 d~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~ 270 (366)
+.+|.+++.. +..+.+++.|+|+.|.+ .+.|.|+ +.||.
T Consensus 310 ~~rL~l~~~~---------~~~Ri~k~~ks~~~~~~-~~~f~It-~~Gi~ 348 (349)
T 1pzn_A 310 TLRVYLRKGK---------GGKRIARLIDAPHLPEG-EAVFSIT-EKGIE 348 (349)
T ss_dssp SEEEEEEECT---------TSEEEEEESCSSSSCCS-EEEEEEE-TTEEE
T ss_pred cEEEEEEEcC---------CCeEEEEEEeCCCCCCe-EEEEEEc-CCCCC
Confidence 9999998742 22346889999987765 4899998 77864
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=199.89 Aligned_cols=206 Identities=26% Similarity=0.427 Sum_probs=140.0
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEeCCCCCCH----HHHh
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDP----SLAE 104 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~------~gg~vl~id~e~~~~~----~~~~ 104 (366)
.+++++||++.||.+|+ ||+++|++++|+||||||||||++++++.+.+ .++.++|++++..+.. .+.+
T Consensus 3 ~~~~i~tG~~~LD~~l~-ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~ 81 (231)
T 4a74_A 3 TIGRISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQ 81 (231)
T ss_dssp CCCEECCSCHHHHHHTT-SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred cCCccCCCChhHHhHhc-CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999 99999999999999999999999999997765 2567899999886553 3455
Q ss_pred hcccccC----cceecCCCCHHH---HHHHHHHHHh-----cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHH
Q 017792 105 TIGVKTE----NLLLAQPDCGEQ---ALSLVDTLIR-----SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ 172 (366)
Q Consensus 105 ~ig~~~~----~~~~~~~~~~e~---~l~~~~~~~~-----~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~ 172 (366)
.+++.++ ++.+.......+ .+..+..++. ..+++++++|++...+ ..++++..... .+.+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l-~~~~~~~~~~~---~r~~~~~~ 157 (231)
T 4a74_A 82 NRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF-RSEYIGRGALA---ERQQKLAK 157 (231)
T ss_dssp HTTSCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHH-HHHSCSTTHHH---HHHHHHHH
T ss_pred HcCCCHHHHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHh-ccccCCCcchh---HHHHHHHH
Confidence 5666553 555554444332 2333444444 6689999999998876 23333311111 12222334
Q ss_pred HHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCC
Q 017792 173 ALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKL 252 (366)
Q Consensus 173 ~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~ 252 (366)
.+..|...+++.|+|||+++|..+. +|..+.++||.++.|+++. ...+.+.+.|+|+
T Consensus 158 ~~~~l~~~~~~~g~tvi~vtH~~~~--------------~g~~~~~~~d~~l~l~~~~---------~~~r~l~~~K~r~ 214 (231)
T 4a74_A 158 HLADLHRLANLYDIAVFVTNQVQAN--------------GGHILAHSATLRVYLRKGK---------GGKRIARLIDAPH 214 (231)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECC-----------------------CCSEEEEEEECT---------TSCEEEEEESCC-
T ss_pred HHHHHHHHHHHCCCeEEEEeecccC--------------cchhhHhhceEEEEEEecC---------CCeEEEEEEeCCC
Confidence 4455555556779999999997753 4566999999999998743 1233699999999
Q ss_pred CCCCCeeEEEEEeCCCCC
Q 017792 253 APPFKTAQFELEFGKGIS 270 (366)
Q Consensus 253 ~~~~~~~~~~i~~~~Gi~ 270 (366)
+|+... .|.|. +.|+.
T Consensus 215 ~~~~~~-~f~i~-~~Gl~ 230 (231)
T 4a74_A 215 LPEGEA-VFSIT-EKGIE 230 (231)
T ss_dssp -CCSCE-EEEEE-TTEEE
T ss_pred CCCceE-EEEEe-ccccc
Confidence 988764 89998 77763
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-25 Score=197.75 Aligned_cols=206 Identities=28% Similarity=0.393 Sum_probs=148.1
Q ss_pred cccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHH----HHhhcccccC--
Q 017792 38 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS----LAETIGVKTE-- 111 (366)
Q Consensus 38 ~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~----~~~~ig~~~~-- 111 (366)
++|||++.||.+++ ||+++|++++|+|+||||||||+++++. ..++.++|++.+...... +.+.++++++
T Consensus 1 ri~tG~~~LD~~l~-Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (220)
T 2cvh_A 1 MLSTGTKSLDSLLG-GGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEA 76 (220)
T ss_dssp CBCCSCHHHHHHTT-SSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHH
T ss_pred CcccCcHHHHHhhc-CCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHH
Confidence 58999999999999 9999999999999999999999999998 557889999998855532 2334454332
Q ss_pred --cceecCCCCHH---HHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCc
Q 017792 112 --NLLLAQPDCGE---QALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 186 (366)
Q Consensus 112 --~~~~~~~~~~e---~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~ 186 (366)
++.+..+.+.+ +.+..+..++.. +++++++|+++.+.... -.. .. ..+.+...++.|...+++.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lliiD~~~~~l~~~-~~~--~~-----~~~~~~~~~~~L~~l~~~~~~ 147 (220)
T 2cvh_A 77 LSRFILFTPSDFKEQRRVIGSLKKTVDS-NFALVVVDSITAHYRAE-ENR--SG-----LIAELSRQLQVLLWIARKHNI 147 (220)
T ss_dssp HHHEEEECCTTTSHHHHHHHHHHHHCCT-TEEEEEEECCCCCTTGG-GGS--ST-----THHHHHHHHHHHHHHHHHHTC
T ss_pred hhcEEEEecCCHHHHHHHHHHHHHHhhc-CCCEEEEcCcHHHhhhc-Cch--HH-----HHHHHHHHHHHHHHHHHHcCC
Confidence 34454544443 345555555544 69999999999886321 110 11 122334444445555567799
Q ss_pred EEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeC
Q 017792 187 ILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFG 266 (366)
Q Consensus 187 tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~ 266 (366)
+||+++|..+..+. ....+.++..|++.||.++.|.+.. . +..+.+.+.|+|.++++....|.|. +
T Consensus 148 ~vi~~~h~~~~~~~-----~~~~p~~~~~~~~~~d~vi~l~~~~---~-----~~~r~l~v~K~r~~~~~~~~~f~I~-~ 213 (220)
T 2cvh_A 148 PVIVINQVHFDSRT-----EMTKPVAEQTLGYRCKDILRLDKLP---K-----PGLRVAVLERHRFRPEGLMAYFRIT-E 213 (220)
T ss_dssp CEEEEECSSSSCTT-----SSCCSCCCHHHHHTSSEEEEEEECS---S-----TTEEEEEEEECSSSCTTCEEEEEEE-T
T ss_pred EEEEEeeEEEcCCC-----CccccCCCcceeecCcEEEEEEEec---C-----CCEEEEEEEeCCCCCCCceEEEEEe-C
Confidence 99999998875332 1245677788999999999999764 1 1234789999999988777899998 8
Q ss_pred CCCC
Q 017792 267 KGIS 270 (366)
Q Consensus 267 ~Gi~ 270 (366)
.||.
T Consensus 214 ~Gi~ 217 (220)
T 2cvh_A 214 RGIE 217 (220)
T ss_dssp TEEE
T ss_pred Ccee
Confidence 8875
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-25 Score=201.53 Aligned_cols=210 Identities=21% Similarity=0.236 Sum_probs=146.0
Q ss_pred CCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEeCCCCCCHH--HHhhcccc
Q 017792 33 PRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHALDPS--LAETIGVK 109 (366)
Q Consensus 33 ~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~-~~gg~vl~id~e~~~~~~--~~~~ig~~ 109 (366)
..++++||||++.||.+|+ ||+++|++++|+|+||+|||+||++++.... ..+..|+|++.|++.... ++.+.+.+
T Consensus 6 ~~~i~ri~TGi~~LD~~l~-GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~ 84 (251)
T 2zts_A 6 YQPVRRVKSGIPGFDELIE-GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWD 84 (251)
T ss_dssp --CCCEECCSCTTTGGGTT-TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCC
T ss_pred cCCCCeecCCcHHHHHhhc-CCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCC
Confidence 3689999999999999999 9999999999999999999999999988754 446789999999876542 23333332
Q ss_pred cC------cce------------------ecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHH
Q 017792 110 TE------NLL------------------LAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAM 165 (366)
Q Consensus 110 ~~------~~~------------------~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~ 165 (366)
.+ ++. .......++++..+...+....++++++|++..+... ... ..
T Consensus 85 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~--~~~---~~---- 155 (251)
T 2zts_A 85 FEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALR--LEE---ER---- 155 (251)
T ss_dssp HHHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHH--SSS---GG----
T ss_pred hHHHHhcCcchhhhhHHHHhhcccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhh--ccC---hH----
Confidence 21 111 1123356677777888888889999999999887521 111 11
Q ss_pred HHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEE
Q 017792 166 QARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAV 245 (366)
Q Consensus 166 ~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l 245 (366)
. +...++.|...+++.|+++++++|..+.... ...+...+++.||.++.|++.+ .+. ...+.+
T Consensus 156 ~---~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~--------~~~~~~~~~~~aD~vi~l~~~~---~~~---~~~R~l 218 (251)
T 2zts_A 156 K---IREVLLKLNTILLEMGVTTILTTEAPDPQHG--------KLSRYGIEEFIARGVIVLDLQE---KNI---ELKRYV 218 (251)
T ss_dssp G---HHHHHHHHHHHHHHHCCEEEEEECCC----C--------CSSSSSCGGGGCSEEEEEEEEE---CSS---SEEEEE
T ss_pred H---HHHHHHHHHHHHHHcCCCeEEEEEEeccccc--------ccccCCceeEEeeEEEEEEEEe---cCC---eEEEEE
Confidence 1 2234555566667889999999998654221 1223344789999999998653 111 234479
Q ss_pred EEEecCCCCC-CCeeEEEEEeCCCCC
Q 017792 246 KIVKNKLAPP-FKTAQFELEFGKGIS 270 (366)
Q Consensus 246 ~v~K~r~~~~-~~~~~~~i~~~~Gi~ 270 (366)
.|.|+|.++. .....|.|+ +.||.
T Consensus 219 ~I~K~R~~~~~~~~~~f~It-~~Gi~ 243 (251)
T 2zts_A 219 LIRKMRETRHSMKKYPFEIG-PNGIV 243 (251)
T ss_dssp EEEEETTCCCCCBEEEEEEE-TTEEE
T ss_pred EEEEcCCCCCCCEEEEEEEe-CCcEE
Confidence 9999998874 356789998 77875
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.6e-25 Score=198.50 Aligned_cols=204 Identities=22% Similarity=0.270 Sum_probs=147.0
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCc-
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN- 112 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~- 112 (366)
++++|||++.||.+|+ ||+++|++++|+|+||+|||||+++++..+.+.++.++|++.+..... .++.++|+++++
T Consensus 2 ~~~i~tG~~~LD~~l~-gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~ 80 (247)
T 2dr3_A 2 TRRVKTGIPGVDEILH-GGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPY 80 (247)
T ss_dssp -CEECCCCTTHHHHTT-TSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHH
T ss_pred cccccCCchhHHHHcC-CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHH
Confidence 3589999999999999 999999999999999999999999999998888889999999986543 334556766542
Q ss_pred -----ceec-------------------CCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHH
Q 017792 113 -----LLLA-------------------QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQAR 168 (366)
Q Consensus 113 -----~~~~-------------------~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar 168 (366)
+.+. .+.+..++...+...+...+++++++|+++.+.. . + .. ..+
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~-~---~---~~----~~~ 149 (247)
T 2dr3_A 81 EEKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYI-N---K---PA----MAR 149 (247)
T ss_dssp HHHTSEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTT-T---C---GG----GHH
T ss_pred hhCCcEEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhc-C---C---HH----HHH
Confidence 2111 1345667777777776666789999999998862 1 1 11 112
Q ss_pred HHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEE
Q 017792 169 LMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIV 248 (366)
Q Consensus 169 ~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~ 248 (366)
+.+..|...+++.|++||+++|....... . .+..++++||.++.|++... .+ ...+.+.+.
T Consensus 150 ---~~l~~l~~~~~~~~~~vi~~~h~~~~~~~--~--------~~~~~~~~~D~vi~L~~~~~--~~----~~~r~l~v~ 210 (247)
T 2dr3_A 150 ---SIILQLKRVLAGTGCTSIFVSQVSVGERG--F--------GGPGVEHGVDGIIRLDLDEI--DG----ELKRSLIVW 210 (247)
T ss_dssp ---HHHHHHHHHHHHTTCEEEEEEECC----C--C--------C-CCHHHHSSEEEEEEEEEE--TT----EEEEEEEEE
T ss_pred ---HHHHHHHHHHHHCCCeEEEEecCCCCccc--c--------cccccceeEEEEEEEEEEcc--CC----eeEEEEEEE
Confidence 23444555556789999999998764211 1 12248899999999987542 11 234589999
Q ss_pred ecCCCCCC-CeeEEEEEeCCCCCc
Q 017792 249 KNKLAPPF-KTAQFELEFGKGISR 271 (366)
Q Consensus 249 K~r~~~~~-~~~~~~i~~~~Gi~~ 271 (366)
|+|.+++. ....|.|. +.|+..
T Consensus 211 K~R~~~~~~~~~~f~i~-~~Gi~~ 233 (247)
T 2dr3_A 211 KMRGTSHSMRRHPFDIT-DKGIIV 233 (247)
T ss_dssp EETTSCCCCBCEEEEEE-TTEEEE
T ss_pred ECCCCCCCCceEEEEEc-CCCEEE
Confidence 99998765 67889998 678753
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.6e-24 Score=200.26 Aligned_cols=234 Identities=18% Similarity=0.166 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 017792 6 LALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ 85 (366)
Q Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~ 85 (366)
+.+..+++.|++. .....++|||++.||.++| |+++|+++.|+|+||+|||||+++++..+...
T Consensus 32 ~~~~~~~~~~~~~--------------~~~~~~i~TG~~~LD~~lg--Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~ 95 (315)
T 3bh0_A 32 EALVTVYEEIESA--------------DGNITGVPSGFTELDRMTY--GYKRRNFVLIAARPSMGKTAFALKQAKNMSDN 95 (315)
T ss_dssp HHHHHHHHHHHTC--------------SSSCCSBCCSCHHHHHHHS--SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc--------------cCCCCCccCChHHHHhhcC--CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 4566777777754 1246799999999999995 99999999999999999999999999998887
Q ss_pred CCeEEEEeCCCCCCHHHHh----hccccc---------------------------CcceecCC--CCHHHHHHHHHHHH
Q 017792 86 GGYCVFIDAEHALDPSLAE----TIGVKT---------------------------ENLLLAQP--DCGEQALSLVDTLI 132 (366)
Q Consensus 86 gg~vl~id~e~~~~~~~~~----~ig~~~---------------------------~~~~~~~~--~~~e~~l~~~~~~~ 132 (366)
+..|+|++.|++......+ ..+++. .++++... .+.+++...+..+.
T Consensus 96 g~~vl~~slE~s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~ 175 (315)
T 3bh0_A 96 DDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTK 175 (315)
T ss_dssp TCEEEEEESSSCHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999875532111 112221 12333333 47888888888888
Q ss_pred hcCCce--EEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-e
Q 017792 133 RSGSVD--VVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-V 209 (366)
Q Consensus 133 ~~~~~~--lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~ 209 (366)
...+++ +||||+++.+... . .. . .+ ...+...++.|...++++|++||+++|.++..+...-..|.. .
T Consensus 176 ~~~~~~~~lVVID~l~~l~~~-~-~~--~--~r---~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~d 246 (315)
T 3bh0_A 176 RKNPGKRVIVMIDYLQLLEPA-K-AN--D--SR---TNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSD 246 (315)
T ss_dssp HTSSSCCEEEEEECGGGSBCS-C-TT--S--CH---HHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGG
T ss_pred HhcCCCCeEEEEeCchhcCCC-C-CC--C--CH---HHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccCCCCCCCHHH
Confidence 777788 9999999998731 1 10 1 11 123334455555555778999999999987644311112211 1
Q ss_pred ccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCC
Q 017792 210 TCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKG 268 (366)
Q Consensus 210 ~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~G 268 (366)
..+...+++.||.++.|.+...+....+..+ .+.+.+.|||.++. ..+.+.|...
T Consensus 247 lr~sg~ie~~aD~vi~L~r~~~~~~~~~~~~-~~~l~v~K~R~G~~---g~~~l~f~~~ 301 (315)
T 3bh0_A 247 LRESGQLEQDADIIEFLYRDDYYDKESESKN-IVEVIIAKHRDGPV---GTVSLAFIKE 301 (315)
T ss_dssp GTTTSHHHHHCSEEEEEEEHHHHCTTCTTTT-EEEEEEEEETTSCC---EEEEEEEEGG
T ss_pred hhhhhhhHhhCCEEEEEecccccCccccCCC-cEEEEEECCcCCCC---ceEEEEEECC
Confidence 3455679999999999998765432222223 34799999998876 3555665433
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-24 Score=203.10 Aligned_cols=242 Identities=17% Similarity=0.148 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHHhcC-CCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 5 DLALQQALDQITSSFG-KGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 5 ~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
.++|..+++.|++.+. .. ..+.++|||++.||.+++ |+++|+++.|.|+||+|||||+++++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~-----------~~~~gi~TG~~~LD~~~g--Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 5 KEVLESAMDLITENQRKGS-----------LEVTGIPTGFVQLDNYTS--GFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----------TCCCSBCCSCHHHHHHHC--SBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC-----------CCcCcccCCChHHHHHhc--CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4688999999999875 32 357899999999999996 999999999999999999999999999998
Q ss_pred hcCCeEEEEeCCCCCCHHHHhh----ccccc-------------------------CcceecC--CCCHHHHHHHHHHHH
Q 017792 84 RQGGYCVFIDAEHALDPSLAET----IGVKT-------------------------ENLLLAQ--PDCGEQALSLVDTLI 132 (366)
Q Consensus 84 ~~gg~vl~id~e~~~~~~~~~~----ig~~~-------------------------~~~~~~~--~~~~e~~l~~~~~~~ 132 (366)
..+..|+|++.|++..+...+- .+++. .++++.. ..++.++...+..+.
T Consensus 72 ~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~ 151 (338)
T 4a1f_A 72 NDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLK 151 (338)
T ss_dssp HTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHH
T ss_pred HcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHH
Confidence 8889999999998765422111 12111 1233333 247889988888887
Q ss_pred hcC-CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCe-eec
Q 017792 133 RSG-SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPT-EVT 210 (366)
Q Consensus 133 ~~~-~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~-~~~ 210 (366)
+.. .+++||||+++.+....... +.. ...+.++..|+.|+ ++.+|+||+++|+++..+...-..|. .-.
T Consensus 152 ~~~gg~~lIVIDyLqlm~~~~~~~---~r~---~ei~~isr~LK~lA---kel~vpVi~lsQl~R~~e~r~dkrP~lsDL 222 (338)
T 4a1f_A 152 SQHKELGIAFIDYLQLMSGSKATK---ERH---EQIAEISRELKTLA---RELEIPIIALVQLNRSLENRDDKRPILSDI 222 (338)
T ss_dssp HHCTTEEEEEEEEEECCCTHHHHH---HCC---CCHHHHHHHHHHHH---HHHTSCEEEEEECCGGGGGSSSCSCCGGGS
T ss_pred HhcCCCCEEEEechHHhcCCCCCC---ChH---HHHHHHHHHHHHHH---HHcCCeEEEEEecCccccccccCCCChHhc
Confidence 776 89999999999887311000 111 12233444455544 67899999999999876542112232 124
Q ss_pred cCCceeeeeceEEEEEEEeceeec------------Cc-c---c-----------------cccEEEEEEEecCCCCCCC
Q 017792 211 CGGNALKFYASVRLNIKRIGLVKK------------GE-E---T-----------------IGSQIAVKIVKNKLAPPFK 257 (366)
Q Consensus 211 ~gG~~l~~~ad~~i~l~~~~~~~~------------~~-~---~-----------------~g~~~~l~v~K~r~~~~~~ 257 (366)
.++.++++.||.+++|.|.+.+.. .. + . ......+.|.|||.+|.
T Consensus 223 reSg~IeqdAD~Vl~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eiiiaK~R~G~~-- 300 (338)
T 4a1f_A 223 KDSGGIEQDADIVLFLYRGYIYQMRAEDNKIDKLKKEGKIEEAQELYLKVNEERRIHKQNGSIEEAEIIVAKNRNGAT-- 300 (338)
T ss_dssp EETTEECCCCSEEEEEECHHHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTSCC--
T ss_pred ccchhhhhhCcEEEEEecchhcccccccccccccccccccccccchhhhhhhhhcccccccCCCceEEEEEeccCCCC--
Confidence 556779999999999999876643 11 1 0 02234788999999886
Q ss_pred eeEEEEEeCCCCCc
Q 017792 258 TAQFELEFGKGISR 271 (366)
Q Consensus 258 ~~~~~i~~~~Gi~~ 271 (366)
..+.+.|.....+
T Consensus 301 -g~v~l~f~~~~~~ 313 (338)
T 4a1f_A 301 -GTVYTRFNAPFTR 313 (338)
T ss_dssp -EEEEEEEEGGGTE
T ss_pred -ceEEEEEccccce
Confidence 5666766544433
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-23 Score=204.46 Aligned_cols=227 Identities=17% Similarity=0.158 Sum_probs=151.5
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCHHH----Hhhccc
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSL----AETIGV 108 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~~~----~~~ig~ 108 (366)
....++|||++.||.++| |+++|++++|+|+||+|||||+++++..+... +.+|+|++.|++..... +...++
T Consensus 178 ~~~~~i~tG~~~LD~~lg--Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i 255 (444)
T 2q6t_A 178 GEVAGVRTGFKELDQLIG--TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARI 255 (444)
T ss_dssp -----CCCSCHHHHHHHC--CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTC
T ss_pred CCCCcccCCCHhhhhhcC--CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCC
Confidence 346799999999999995 99999999999999999999999999998864 67899999998765322 223344
Q ss_pred ccCc-------------------------ceecCC--CCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchh
Q 017792 109 KTEN-------------------------LLLAQP--DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDA 161 (366)
Q Consensus 109 ~~~~-------------------------~~~~~~--~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~ 161 (366)
+.++ +++... .+..++...+..+....++++||||+++.+........ ..
T Consensus 256 ~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~---~~ 332 (444)
T 2q6t_A 256 DMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGPGSGKS---GE 332 (444)
T ss_dssp CTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC----------
T ss_pred CHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCCcCCCC---CC
Confidence 3332 223222 37888888888888777899999999999873200000 01
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCe-eeccCCceeeeeceEEEEEEEeceeecCccccc
Q 017792 162 HMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPT-EVTCGGNALKFYASVRLNIKRIGLVKKGEETIG 240 (366)
Q Consensus 162 ~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~-~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g 240 (366)
. ....+...++.|...+++.+++||+++|.++..+...-..|. ....++..+++.||.++.|.+.+.+....+..+
T Consensus 333 ~---r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r~~~~~~~~~~~~ 409 (444)
T 2q6t_A 333 N---RQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYRDEYYNPHSEKAG 409 (444)
T ss_dssp C---HHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEEGGGTCSSSSCCS
T ss_pred C---HHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEecccccCCcCCCCC
Confidence 1 122334445555555567899999999998764431111121 112334569999999999998765432211123
Q ss_pred cEEEEEEEecCCCCCCCeeEEEEEeCCCCCch
Q 017792 241 SQIAVKIVKNKLAPPFKTAQFELEFGKGISRE 272 (366)
Q Consensus 241 ~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~ 272 (366)
.+.+.|.|+|.++. ..+.+.|.....++
T Consensus 410 -~~~l~i~K~R~g~~---g~~~l~f~~~~~~f 437 (444)
T 2q6t_A 410 -IAEIIVGKQRNGPT---GTVELQFHASHVRF 437 (444)
T ss_dssp -EEEEEEEECSSSCC---EEEEEEEETTTTEE
T ss_pred -eEEEEEEecCCCCc---eEEEEEEECCccEE
Confidence 44799999999876 45667776555443
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-23 Score=204.92 Aligned_cols=244 Identities=15% Similarity=0.180 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 017792 6 LALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ 85 (366)
Q Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~ 85 (366)
+.+..+++.|++.+.. .....++|||++.||.+++ |+++|++++|+|+||+|||||+++++..+.+.
T Consensus 164 ~~~~~~~~~~~~~~~~-----------~~~~~~i~tG~~~LD~~~g--Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~ 230 (454)
T 2r6a_A 164 DILVQTYDNIEMLHNR-----------DGEITGIPTGFTELDRMTS--GFQRSDLIIVAARPSVGKTAFALNIAQNVATK 230 (454)
T ss_dssp HHHHHHHHHHHHHHSC-----------CCCCCSBCCSCHHHHHHHS--SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-----------CCCCCCCCCCcHHHHhhcC--CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3456666667665432 2456899999999999996 89999999999999999999999999999874
Q ss_pred -CCeEEEEeCCCCCCHHH----HhhcccccC-------------------------cceecC--CCCHHHHHHHHHHHHh
Q 017792 86 -GGYCVFIDAEHALDPSL----AETIGVKTE-------------------------NLLLAQ--PDCGEQALSLVDTLIR 133 (366)
Q Consensus 86 -gg~vl~id~e~~~~~~~----~~~ig~~~~-------------------------~~~~~~--~~~~e~~l~~~~~~~~ 133 (366)
+..|+|++.|.+..... +...+++++ ++++.. ..+..++...+..+..
T Consensus 231 ~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~ 310 (454)
T 2r6a_A 231 TNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQ 310 (454)
T ss_dssp SSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999998765322 222344332 223322 2478888888888887
Q ss_pred cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCe-eeccC
Q 017792 134 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPT-EVTCG 212 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~-~~~~g 212 (366)
..+++++|||+++.+.... ... .+. ....+.++..|+.|+ ++.|++||+++|.++..+...-..|. ....+
T Consensus 311 ~~~~~livID~l~~~~~~~-~~~-~~~---~~~i~~i~~~Lk~lA---ke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~ 382 (454)
T 2r6a_A 311 ESGLGMIVIDYLQLIQGSG-RSK-ENR---QQEVSEISRSLKALA---RELEVPVIALSQLSRSVEQRQDKRPMMSDIRE 382 (454)
T ss_dssp TTCCCEEEEECGGGSCCSC-C-----C---HHHHHHHHHHHHHHH---HHHTCCEEEEECCCTTSTTC---CCCTHHHHT
T ss_pred HcCCCEEEEccHHHhccCC-CCC-CCH---HHHHHHHHHHHHHHH---HHhCCeEEEEecCCcccccCCCCCCcHHHhhc
Confidence 7789999999999987321 111 011 122233444444444 66799999999988764431000121 11234
Q ss_pred CceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCCeeEEEEEeCCCCCchhh
Q 017792 213 GNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESE 274 (366)
Q Consensus 213 G~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~~~ 274 (366)
+..+++.||.++.|.+.+.+....+..+ .+.+.+.|||.++. ..+.+.|.....++.+
T Consensus 383 Sg~ie~~aD~vi~l~r~~~~~~~~~~~~-~~~l~i~K~R~G~~---g~v~l~f~~~~~~f~~ 440 (454)
T 2r6a_A 383 SGSIEQDADIVAFLYRDDYYNKDSENKN-IIEIIIAKQRNGPV---GTVQLAFIKEYNKFVN 440 (454)
T ss_dssp TCSHHHHCSEEEEEEETTC-------CC-EEEEEEEEESSSCC---EEEEEEEETTTTEEEC
T ss_pred cchhHhhCCEEEEEecccccCcccCCCC-eEEEEEecccCCCC---eEEEEEEEcCccEEeC
Confidence 5569999999999999876533221123 44799999998876 4567777666554433
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-22 Score=199.77 Aligned_cols=223 Identities=17% Similarity=0.144 Sum_probs=156.2
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHh----hccccc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAE----TIGVKT 110 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~----~ig~~~ 110 (366)
...++|||++.||.++| |+++|+++.|.|+||+|||||+++++..+...+.+|+|++.|++..+...+ ..+++.
T Consensus 176 ~~~gi~TG~~~LD~~lg--Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~R~~~~~~~i~~ 253 (444)
T 3bgw_A 176 NITGVPSGFTELDRMTY--GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINA 253 (444)
T ss_dssp SCCSBCCSCHHHHHHHS--SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHHHHHHHHSCCCH
T ss_pred CCCCcCCCcHHHHhhcC--CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHHHcCCCH
Confidence 46799999999999996 999999999999999999999999999998888899999999987753221 223221
Q ss_pred ---------------------------CcceecC--CCCHHHHHHHHHHHHhcCCce--EEEEecccccCCCCccCCccc
Q 017792 111 ---------------------------ENLLLAQ--PDCGEQALSLVDTLIRSGSVD--VVVVDSVAALVPKGELDGEMG 159 (366)
Q Consensus 111 ---------------------------~~~~~~~--~~~~e~~l~~~~~~~~~~~~~--lvviDsl~~l~~~~~l~~~~g 159 (366)
.++++.. ..++.++...+..+....+++ +||||+++.+.... . . .
T Consensus 254 ~~l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~-~-~--~ 329 (444)
T 3bgw_A 254 QKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAK-A-N--D 329 (444)
T ss_dssp HHHHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCSC-S-S--S
T ss_pred HHHhcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCCC-C-C--C
Confidence 1223333 247888988888887777899 99999999886321 1 1 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCee-eccCCceeeeeceEEEEEEEeceeecCccc
Q 017792 160 DAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTE-VTCGGNALKFYASVRLNIKRIGLVKKGEET 238 (366)
Q Consensus 160 ~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~-~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~ 238 (366)
.+ ...+...++.|...+++.|++||+++|.++..+...-..|.. ...++.++++.||.++.|.+.+.+....+.
T Consensus 330 --~r---~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi~L~r~~~~~~~~~~ 404 (444)
T 3bgw_A 330 --SR---TNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYDKESES 404 (444)
T ss_dssp --CH---HHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEEECCBGGGTCTTCSS
T ss_pred --CH---HHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCCEEEEEeccccccccccC
Confidence 11 122334445555555778999999999987654311112221 134455699999999999987654322222
Q ss_pred cccEEEEEEEecCCCCCCCeeEEEEEeCCCCCch
Q 017792 239 IGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRE 272 (366)
Q Consensus 239 ~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~~~ 272 (366)
.+ .+.+.+.|||.++. ..+.+.|.....++
T Consensus 405 ~~-~~~l~i~K~R~G~~---g~v~l~f~~~~~rf 434 (444)
T 3bgw_A 405 KN-IVEVIIAKHRDGPV---GTVSLAFIKEYGNF 434 (444)
T ss_dssp TT-EEEEEEEEESSSCC---EEEEEEEETTTTEE
T ss_pred CC-eEEEEEEcccCCCC---eEEEEEEEcCccEE
Confidence 23 34799999998876 45667765554433
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-22 Score=180.12 Aligned_cols=203 Identities=22% Similarity=0.287 Sum_probs=141.5
Q ss_pred CcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCcce
Q 017792 37 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENLL 114 (366)
Q Consensus 37 ~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~~~ 114 (366)
++++||++.||.+++ ||+++|++++|+||||||||||+++++..+.+.++.++|++.+..... .+...+++.++.+.
T Consensus 3 ~~i~tg~~~Ld~~~~-ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQ-GGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYI 81 (235)
T ss_dssp CEECCSCHHHHGGGT-TSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGB
T ss_pred ccccCCchHHHHHhc-CCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHh
Confidence 589999999999998 999999999999999999999999999998888889999998875432 22335666554321
Q ss_pred -----e-------------cCCCCHHHHHHHHHHHHhcCCce--EEEEecccccCCCCccCCccchhhHHHHHHHHHHHH
Q 017792 115 -----L-------------AQPDCGEQALSLVDTLIRSGSVD--VVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQAL 174 (366)
Q Consensus 115 -----~-------------~~~~~~e~~l~~~~~~~~~~~~~--lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L 174 (366)
+ ....+..++...+...+...+++ ++++|+++.+.... .. ..+.+...|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d-----~~------~~~~~~~~l 150 (235)
T 2w0m_A 82 EKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDK-----PA------MARKISYYL 150 (235)
T ss_dssp TTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSC-----GG------GHHHHHHHH
T ss_pred hCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCC-----HH------HHHHHHHHH
Confidence 1 11226677776666666556788 99999999876211 01 123344444
Q ss_pred HHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCC
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAP 254 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~ 254 (366)
+.+. ++.|++||+++|..+. +. +. . + ..+.++||.++.|++... .+ ...+.+.+.|+|.++
T Consensus 151 ~~~~---~~~~~~vi~~~h~~~~-~~----~~---~-~-~~~~~~~d~vi~l~~~~~--~~----~~~r~l~v~K~r~~~ 211 (235)
T 2w0m_A 151 KRVL---NKWNFTIYATSQYAIT-TS----QA---F-G-FGVEHVADGIIRFRRMIR--NG----ELHRYILIEKMRQTD 211 (235)
T ss_dssp HHHH---HHTTEEEEEEEC---------------------CHHHHCSEEEEEEEEEE--TT----EEEEEEEEEEETTCC
T ss_pred HHHH---HhCCCeEEEEeccCcc-cc----cc---c-c-cchheeeeEEEEEEEEec--CC----cEEEEEEEEeccCCc
Confidence 4443 5679999999998742 10 00 0 1 348889999999997642 11 124479999999887
Q ss_pred CC-CeeEEEEEeCC-CCCc
Q 017792 255 PF-KTAQFELEFGK-GISR 271 (366)
Q Consensus 255 ~~-~~~~~~i~~~~-Gi~~ 271 (366)
+. ....|.|. +. |+..
T Consensus 212 ~~~~~~~f~i~-~~~Gi~~ 229 (235)
T 2w0m_A 212 HDKHVWEIDIV-NGKGIVL 229 (235)
T ss_dssp CCCSCEEEEEE-TTTEEEE
T ss_pred ccceeEEEEEc-CCCCeEE
Confidence 54 67889998 66 8753
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-20 Score=187.96 Aligned_cols=215 Identities=13% Similarity=0.141 Sum_probs=149.9
Q ss_pred CCCCcccC-ChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCHHH----Hhhcc
Q 017792 34 RHVPVVST-GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSL----AETIG 107 (366)
Q Consensus 34 ~~~~~i~T-G~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~~~----~~~ig 107 (366)
....++|| |++.||.+|| |+++|++++|.|+||+|||||+++++..+... +..|+|++.|++..+.. +...+
T Consensus 219 ~~~~~i~t~G~~~LD~~lg--Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r~~~~~~~ 296 (503)
T 1q57_A 219 EESVGLLFSGCTGINDKTL--GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNR 296 (503)
T ss_dssp SCTTCSCCSSCTTHHHHHC--CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHHHHHHHTT
T ss_pred cccCCccccchhhhhHhhc--ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcC
Confidence 35679999 9999999996 89999999999999999999999999999876 77999999998765321 23334
Q ss_pred cccC--------------------------cceecCC---CCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCcc
Q 017792 108 VKTE--------------------------NLLLAQP---DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEM 158 (366)
Q Consensus 108 ~~~~--------------------------~~~~~~~---~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~ 158 (366)
++.. ++.+... .+.++++..+..+....++++||||+++.+... . .. .
T Consensus 297 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~-~-~~-~ 373 (503)
T 1q57_A 297 VRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSA-S-GE-S 373 (503)
T ss_dssp SCCTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSC-C-SC-C
T ss_pred CChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCCC-C-CC-C
Confidence 4322 2344433 578899999988888888999999999988631 1 10 0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccccc----CCCCe-eeccCCceeeeeceEEEEEEEeceee
Q 017792 159 GDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFG----FGGPT-EVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 159 g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~----~~~~~-~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
. ..+.+...++.|...++++|++||+++|.++ ..... ...|. ....++..+++.||.+|.|.+.+.
T Consensus 374 ~------~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r-~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~r~~~-- 444 (503)
T 1q57_A 374 D------ERKMIDNLMTKLKGFAKSTGVVLVVICHLKN-PDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ-- 444 (503)
T ss_dssp C------HHHHHHHHHHHHHHHHHHHTCEEEEEEECCC-CSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEEECSS--
T ss_pred C------HHHHHHHHHHHHHHHHHHHCCeEEEEEcCCc-hhccCccccCCCCChhhhccchHhhecCcEEEEEEeCCc--
Confidence 1 1123344555555555778999999999987 22100 01121 123456679999999999998642
Q ss_pred cCccccccEEEEEEEecC-CCCCCCeeEE-EEEeCCC
Q 017792 234 KGEETIGSQIAVKIVKNK-LAPPFKTAQF-ELEFGKG 268 (366)
Q Consensus 234 ~~~~~~g~~~~l~v~K~r-~~~~~~~~~~-~i~~~~G 268 (366)
.+ ..+ .+.+.+.||| .++. ..+ .+.|...
T Consensus 445 -~~-~~~-~~~l~v~K~R~~G~~---g~~~~l~f~~~ 475 (503)
T 1q57_A 445 -GD-MPN-LVLVRILKCRFTGDT---GIAGYMEYNKE 475 (503)
T ss_dssp -SS-CTT-EEEEEEEEETTTCCC---EEEEEEEECTT
T ss_pred -CC-CCC-eEEEEEEeccCCCCC---CceEEEEEEcC
Confidence 11 113 4479999999 4765 333 5566544
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-21 Score=179.30 Aligned_cols=214 Identities=15% Similarity=0.239 Sum_probs=129.4
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc----------CCeEEEEeCCCCCCH--HH
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ----------GGYCVFIDAEHALDP--SL 102 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~----------gg~vl~id~e~~~~~--~~ 102 (366)
..+.++||++.||.+|+ |+++|++++|+||||||||||++++++.+... ++.++|++.|+.... .+
T Consensus 9 ~~~~i~tg~~~ld~~lg--gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r 86 (279)
T 1nlf_A 9 ILEAFAAAPPPLDYVLP--NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHR 86 (279)
T ss_dssp HHHHHHSCCCCCCEEET--TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHH
T ss_pred HHHHhcCCCCChheeEC--CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHH
Confidence 35689999999999996 89999999999999999999999999977642 467999999987643 23
Q ss_pred Hhhccccc---------CcceecCC-------CCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHH
Q 017792 103 AETIGVKT---------ENLLLAQP-------DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQ 166 (366)
Q Consensus 103 ~~~ig~~~---------~~~~~~~~-------~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ 166 (366)
+..+++.+ +++.+.+. .+.. .+..+..++. +++++++|+++++.+..+ ...
T Consensus 87 ~~~~g~~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g-~~~~i~~l~~--~~~livlDe~~~~~~~d~-----~~~----- 153 (279)
T 1nlf_A 87 LHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPE-WFDGLKRAAE--GRRLMVLDTLRRFHIEEE-----NAS----- 153 (279)
T ss_dssp HHHHHTTSCHHHHHHHHHHEEECCCTTSCCCTTSHH-HHHHHHHHHT--TCSEEEEECGGGGCCSCT-----TCH-----
T ss_pred HHHHHhhcChhhhhhccCceEEeecCCCCcccCCHH-HHHHHHHhcC--CCCEEEECCHHHhcCCCc-----Cch-----
Confidence 44455443 23333221 1222 3455555554 589999999999864211 111
Q ss_pred HHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCe--eeccCCceeeeeceEEEEEEEeceeec--------Cc
Q 017792 167 ARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPT--EVTCGGNALKFYASVRLNIKRIGLVKK--------GE 236 (366)
Q Consensus 167 ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~--~~~~gG~~l~~~ad~~i~l~~~~~~~~--------~~ 236 (366)
+.+...++.|...+++.|+|||+++|.++.... ++.+. ....|+.++. |.++.+........ ++
T Consensus 154 -~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~~--~g~~~~~~~~~g~~~l~---d~v~~~~~~~~~~~~~~~~~gi~~ 227 (279)
T 1nlf_A 154 -GPMAQVIGRMEAIAADTGCSIVFLHHASKGAAM--MGAGDQQQASRGSSVLV---DNIRWQSYLSSMTSAEAEEWGVDD 227 (279)
T ss_dssp -HHHHHHHHHHHHHHHHHCCEEEEEEEC----------------------CTG---GGCSCEEEEEECCHHHHHHTTCCT
T ss_pred -HHHHHHHHHHHHHHHHcCCEEEEEecCCCcccc--cCCchhhhhccchhhhc---cchhhhhhccCCCHHHHHHhCCCh
Confidence 122233444444445679999999999875321 12111 1234444453 33333332221111 12
Q ss_pred cccccEEEEEEEecCCCCCCCeeEEEEEeCCCCC
Q 017792 237 ETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGIS 270 (366)
Q Consensus 237 ~~~g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~ 270 (366)
+..+..+.+.+.|||++||+....|.+. +.|+.
T Consensus 228 ~~~~~~~~~~v~K~~~~~~~~~~~~~~~-~~G~l 260 (279)
T 1nlf_A 228 DQRRFFVRFGVSKANYGAPFADRWFRRH-DGGVL 260 (279)
T ss_dssp TSGGGEEEEEEEECSSSSCCCCEEEEEC-GGGCE
T ss_pred hhcCcEEEeeeccccCCCCCCceEEEEc-CCeeE
Confidence 2345566799999999999877667666 56654
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.5e-20 Score=185.04 Aligned_cols=207 Identities=18% Similarity=0.195 Sum_probs=150.9
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccC-
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTE- 111 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~- 111 (366)
.+++++||++.||.+|+ ||+++|++++|+|+||||||||++++++...+.|+.++|+.+++.... ..+.++|++.+
T Consensus 259 ~~~~l~~g~~~ld~vL~-g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~ 337 (525)
T 1tf7_A 259 SNVRVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEE 337 (525)
T ss_dssp CCCEECCSCHHHHHHTT-SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHH
T ss_pred ccceeecChHHHHHHhC-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHH
Confidence 56799999999999999 999999999999999999999999999998887778899998876432 22334555421
Q ss_pred -----cceecC----CCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhh
Q 017792 112 -----NLLLAQ----PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS 182 (366)
Q Consensus 112 -----~~~~~~----~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~ 182 (366)
.+.+.. ..+..+....+...+...+++++++|+++.+... .. + .+.+ ..+..+...++
T Consensus 338 ~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~--~~---~-----~~~~---~~i~~ll~~l~ 404 (525)
T 1tf7_A 338 MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARG--VS---N-----NAFR---QFVIGVTGYAK 404 (525)
T ss_dssp HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSS--SC---H-----HHHH---HHHHHHHHHHH
T ss_pred HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhh--CC---h-----HHHH---HHHHHHHHHHH
Confidence 122221 2466776666666666678999999988888642 11 1 1222 44556666667
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCC-CCeeEE
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP-FKTAQF 261 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~-~~~~~~ 261 (366)
+.|+|||+++|.....+. +.+| +..+.++||+++.|++++. .+ ..++.+.++|+|.++. ....+|
T Consensus 405 ~~g~tvilvsh~~~~~~~--~~~~------~~~l~~~~D~vi~L~~ge~--~~----~~~R~l~v~K~R~~~~~~~~~~f 470 (525)
T 1tf7_A 405 QEEITGLFTNTSDQFMGA--HSIT------DSHISTITDTIILLQYVEI--RG----EMSRAINVFKMRGSWHDKAIREF 470 (525)
T ss_dssp HTTCEEEEEEECSSSSCC--CSSC------SSCCTTTCSEEEEEEEEEE--TT----EEEEEEEEEEESSSCCCCBCEEE
T ss_pred hCCCEEEEEECcccccCc--cccc------CcccceeeeEEEEEEEEEe--CC----EEEEEEEEEECCCCCCCCCEEEE
Confidence 789999999998754221 1111 1347899999999998752 22 2345799999999987 578899
Q ss_pred EEEeCCCCC
Q 017792 262 ELEFGKGIS 270 (366)
Q Consensus 262 ~i~~~~Gi~ 270 (366)
.|. +.|+.
T Consensus 471 ~i~-~~Gi~ 478 (525)
T 1tf7_A 471 MIS-DKGPD 478 (525)
T ss_dssp EEC-SSCEE
T ss_pred EEc-CCCEE
Confidence 998 89987
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=9.3e-19 Score=164.11 Aligned_cols=206 Identities=14% Similarity=0.140 Sum_probs=126.7
Q ss_pred CCCCcccC-ChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCHHHHhhc-----
Q 017792 34 RHVPVVST-GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSLAETI----- 106 (366)
Q Consensus 34 ~~~~~i~T-G~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~~~~~~i----- 106 (366)
....++|| |++.||.+++ |+++|++++|+|+||+|||||++++++.+.+. |..|+|++.+..... +.+++
T Consensus 12 ~~~~~i~t~g~~~Ld~i~~--~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~-~~~r~~~~~~ 88 (296)
T 1cr0_A 12 EESVGLLFSGCTGINDKTL--GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEE-TAEDLIGLHN 88 (296)
T ss_dssp CCCCCBCCCSCTTHHHHHC--SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHH-HHHHHHHHHT
T ss_pred CCcCCcccCCHHHHHHHhc--CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHH-HHHHHHHHHc
Confidence 35678999 9999999985 99999999999999999999999999999887 448999998864322 11111
Q ss_pred cccc--------------------------CcceecC---CCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCc
Q 017792 107 GVKT--------------------------ENLLLAQ---PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGE 157 (366)
Q Consensus 107 g~~~--------------------------~~~~~~~---~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~ 157 (366)
+... .++.+.. ..++.++...+.......+++++++|+++.+... .. .
T Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~--~~-~ 165 (296)
T 1cr0_A 89 RVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSA--SG-E 165 (296)
T ss_dssp TCCGGGCHHHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------
T ss_pred CCChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCC--CC-C
Confidence 1110 1222332 2567887777765556678999999999987621 00 0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccc---ccCCCCe-eeccCCceeeeeceEEEEEEEeceee
Q 017792 158 MGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLST---FGFGGPT-EVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 158 ~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~---~~~~~~~-~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
.... ...+.+...|+.+. ++.|+|||+++|..+.-+. ..-..|. ....|+..+.++||+++.|.++...
T Consensus 166 ~d~~---~~~~~i~~~L~~la---~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~~- 238 (296)
T 1cr0_A 166 SDER---KMIDNLMTKLKGFA---KSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQG- 238 (296)
T ss_dssp ---C---HHHHHHHHHHHHHH---HHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC----
T ss_pred CCHH---HHHHHHHHHHHHHH---HHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCccc-
Confidence 0110 12233444455554 4579999999999631000 0000111 1223444688999999999987532
Q ss_pred cCccccccEEEEEEEecCC-CCCC
Q 017792 234 KGEETIGSQIAVKIVKNKL-APPF 256 (366)
Q Consensus 234 ~~~~~~g~~~~l~v~K~r~-~~~~ 256 (366)
++ .+ .+.+.+.|+|+ ++.+
T Consensus 239 ~~---~~-~~~l~i~K~R~~g~~g 258 (296)
T 1cr0_A 239 DM---PN-LVLVRILKCRFTGDTG 258 (296)
T ss_dssp --------CEEEEEEEETTTCCCE
T ss_pred CC---CC-eEEEEEEccccCCCCC
Confidence 11 12 34799999996 7653
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.4e-17 Score=164.12 Aligned_cols=201 Identities=15% Similarity=0.157 Sum_probs=131.9
Q ss_pred CCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHH--HHHHhhcCCeEEEEeCCCCCC--HHHHhhccc
Q 017792 33 PRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHV--IAEAQRQGGYCVFIDAEHALD--PSLAETIGV 108 (366)
Q Consensus 33 ~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l--~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~ 108 (366)
...+.+++||++.||.+.. ||+++|++++|+||||||||||++++ .+...+ +..++|+++++... ...++.+|+
T Consensus 15 ~~~~~~~~~g~~~Ld~i~~-G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~-~~g~i~v~g~~~~~~~~~~~~~~g~ 92 (525)
T 1tf7_A 15 HQAIAKMRTMIEGFDDISH-GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF-DEPGVFVTFEETPQDIIKNARSFGW 92 (525)
T ss_dssp CSSCCEECCCCTTHHHHTT-SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH-CCCEEEEESSSCHHHHHHHHGGGTC
T ss_pred ccccccccCCchhHHHhcC-CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEEeCCHHHHHHHHHHcCC
Confidence 3457899999999999998 89999999999999999999999995 454444 44479999887432 234667898
Q ss_pred ccCcce------ecC------------CCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHH
Q 017792 109 KTENLL------LAQ------------PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM 170 (366)
Q Consensus 109 ~~~~~~------~~~------------~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l 170 (366)
++|++. ... .....+.+......++.++++++++|++.++.+...++ . ...
T Consensus 93 ~~q~~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD-----~---~~~--- 161 (525)
T 1tf7_A 93 DLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDAS-----S---VVR--- 161 (525)
T ss_dssp CHHHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCH-----H---HHH---
T ss_pred ChHHhhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCH-----H---HHH---
Confidence 887542 111 11234455555555666789999999999987532111 1 112
Q ss_pred HHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCcee-eeeceEEEEEEEeceeecCccccccEEEEEEEe
Q 017792 171 SQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNAL-KFYASVRLNIKRIGLVKKGEETIGSQIAVKIVK 249 (366)
Q Consensus 171 ~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l-~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K 249 (366)
..+..+.+.+++.|+|||+++|....+.. . ....+ .++||+++.|+++.. .+. ....+.+.|
T Consensus 162 -~~l~~ll~~l~~~g~tvl~itH~~~~~~~-------~---~~~~i~~~laD~vi~L~~~~~--~G~----~~r~l~~~k 224 (525)
T 1tf7_A 162 -RELFRLVARLKQIGATTVMTTERIEEYGP-------I---ARYGVEEFVSDNVVILRNVLE--GER----RRRTLEILK 224 (525)
T ss_dssp -HHHHHHHHHHHHHTCEEEEEEECSSSSSC-------S---STTSCHHHHCSEEEEEEEECS--TTC----CEEEEEEEE
T ss_pred -HHHHHHHHHHHHCCCEEEEEecCCCCccc-------c---ccccceeeeeeEEEEEEEEcc--CCc----eeEEEEEEE
Confidence 23444555555679999999998765321 0 00112 566999999998652 222 233567788
Q ss_pred cCCCCC-CCeeEEEE
Q 017792 250 NKLAPP-FKTAQFEL 263 (366)
Q Consensus 250 ~r~~~~-~~~~~~~i 263 (366)
.|..++ .....|.+
T Consensus 225 ~r~~~~~~~~~~~~i 239 (525)
T 1tf7_A 225 LRGTSHMKGEYPFTI 239 (525)
T ss_dssp ETTSCCCCSEEEEEE
T ss_pred CCCCCCCCceEEEEE
Confidence 774432 12344544
|
| >3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.1e-16 Score=142.99 Aligned_cols=73 Identities=11% Similarity=0.078 Sum_probs=65.5
Q ss_pred cccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccC
Q 017792 38 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTE 111 (366)
Q Consensus 38 ~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~ 111 (366)
.+|||++.||.+|+ ||+|+|++++|.|.||+|||||+.+++......|.+|+|+..+++... ..++.+|++++
T Consensus 2 ~i~tGi~~LD~~l~-GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~~~~l~~~~~~~G~dl~ 76 (260)
T 3bs4_A 2 SLSWEIEELDREIG-KIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYPLQLIIRILSRFGVDVI 76 (260)
T ss_dssp CBCCSSHHHHHHHC-CBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHTTCCHH
T ss_pred cCccCcHHHHHHhC-CCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHcCCCHH
Confidence 58999999999999 999999999999999999999999999999888999999999988774 44666777654
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-16 Score=152.57 Aligned_cols=160 Identities=17% Similarity=0.209 Sum_probs=112.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H----HHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P----SLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~----~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... . .+++.+|+.+|+..++...|+.+.+.+.
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~-I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~ 129 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS-VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP 129 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE-EEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHH
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceE-EEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHH
Confidence 7899999999999999999999999988887776 6677665432 1 2356799999999888888998887654
Q ss_pred HHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 DTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
....... -...+-++....-. ..++++ |++|+...||+++.. +..+.
T Consensus 130 ~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~-~~~LSG--GqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL 206 (366)
T 3tui_C 130 LELDNTPKDEVKRRVTELLSLVGLGDKHDSY-PSNLSG--GQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL 206 (366)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHTCGGGTTCC-TTTSCH--HHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchHhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHH
Confidence 3211000 00111112222222 245555 889999998887654 55555
Q ss_pred HHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 179 HSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 179 ~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++ +.|+|||+++|..+. +..+||+++.|++++++..+.
T Consensus 207 ~~l~~~~g~Tii~vTHdl~~------------------~~~~aDrv~vl~~G~iv~~g~ 247 (366)
T 3tui_C 207 KDINRRLGLTILLITHEMDV------------------VKRICDCVAVISNGELIEQDT 247 (366)
T ss_dssp HHHHHHSCCEEEEEESCHHH------------------HHHHCSEEEEEETTEEEECCB
T ss_pred HHHHHhCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEEEcC
Confidence 5554 469999999997764 566899999999888777653
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-16 Score=152.01 Aligned_cols=159 Identities=17% Similarity=0.221 Sum_probs=111.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++.... +...+.+|+++|+..+++..|+.+++.+......
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~-I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~ 104 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD-LFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG 104 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE-EEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTT
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeE-EEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcC
Confidence 6799999999999999999999999998888776 6777765432 2334679999999998888899888765332110
Q ss_pred cC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh-h
Q 017792 134 SG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-S 182 (366)
Q Consensus 134 ~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l-~ 182 (366)
.. -...+-++.+..-. ..++++ |++|+...||+++.. ++.+.+.+ +
T Consensus 105 ~~~~~~~~~v~~~l~~~~L~~~~~r~-p~~LSG--GqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~ 181 (381)
T 3rlf_A 105 AKKEVINQRVNQVAEVLQLAHLLDRK-PKALSG--GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181 (381)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTCC-GGGSCH--HHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCC-hhHCCH--HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH
Confidence 00 00111122222222 245555 899999999998764 55555555 3
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+.|+|+|+++|..++ +..+||+++.|++++++..+
T Consensus 182 ~~g~tii~vTHd~~e------------------a~~~aDri~vl~~G~i~~~g 216 (381)
T 3rlf_A 182 RLGRTMIYVTHDQVE------------------AMTLADKIVVLDAGRVAQVG 216 (381)
T ss_dssp HHCCEEEEECSCHHH------------------HHHHCSEEEEEETTEEEEEE
T ss_pred hCCCEEEEEECCHHH------------------HHHhCCEEEEEECCEEEEEe
Confidence 469999999998765 45578888888887765543
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.4e-16 Score=144.46 Aligned_cols=159 Identities=16% Similarity=0.160 Sum_probs=105.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC-C----HHHHhhcccccCcce-ecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-D----PSLAETIGVKTENLL-LAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~-~----~~~~~~ig~~~~~~~-~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.... . ..+++.+|+.+|++. .....++.+.+.+.
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~-I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~ 109 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGR-ILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFG 109 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeE-EEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHH
Confidence 7899999999999999999999999988887776 677776542 1 235678999999863 22356777766543
Q ss_pred HHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 DTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
....... -...+-++.+..-. ...+++ |++|+...||+++.. +..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LSg--GqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l 186 (275)
T 3gfo_A 110 AVNMKLPEDEIRKRVDNALKRTGIEHLKDKP-THCLSF--GQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL 186 (275)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHTTCGGGTTSB-GGGSCH--HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhcCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH
Confidence 2210000 00000011211111 234444 888888888877654 55555
Q ss_pred HHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 179 HSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 179 ~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
..++ +.|+|||+++|..+. +..+||+++.|+++.++..+
T Consensus 187 ~~l~~~~g~tvi~vtHdl~~------------------~~~~~drv~~l~~G~i~~~g 226 (275)
T 3gfo_A 187 VEMQKELGITIIIATHDIDI------------------VPLYCDNVFVMKEGRVILQG 226 (275)
T ss_dssp HHHHHHHCCEEEEEESCCSS------------------GGGGCSEEEEEETTEEEEEE
T ss_pred HHHHhhCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEEEC
Confidence 5554 559999999997764 56679999999877655443
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.6e-16 Score=142.38 Aligned_cols=156 Identities=16% Similarity=0.175 Sum_probs=105.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... ..+.+.+|+.+|+..++...|+.+.+.+.....
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~-I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~ 116 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI-VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY 116 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc
Confidence 7799999999999999999999999988877776 5666654322 345677999999988877778888876643221
Q ss_pred hcCC----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 133 RSGS----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 133 ~~~~----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
.... ...+-++....-. ...+++ |++|+...||+++.. +..+...++
T Consensus 117 ~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LSg--Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 193 (256)
T 1vpl_A 117 ASSSSEIEEMVERATEIAGLGEKIKDR-VSTYSK--GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193 (256)
T ss_dssp CCCHHHHHHHHHHHHHHHCCGGGGGSB-GGGCCH--HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCCchHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 1000 0001111111111 234444 788888888877653 555665565
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
+.|+|||+++|..+. +..+||+++.|.++.++
T Consensus 194 ~~g~tiiivtHd~~~------------------~~~~~d~v~~l~~G~i~ 225 (256)
T 1vpl_A 194 QEGLTILVSSHNMLE------------------VEFLCDRIALIHNGTIV 225 (256)
T ss_dssp HTTCEEEEEECCHHH------------------HTTTCSEEEEEETTEEE
T ss_pred hCCCEEEEEcCCHHH------------------HHHHCCEEEEEECCEEE
Confidence 669999999997654 45578998888766543
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-16 Score=150.67 Aligned_cols=159 Identities=18% Similarity=0.209 Sum_probs=109.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC-----CCHHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-----LDPSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~-----~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
+++|++++|+||||||||||++.+++...+..|. ++++++.. ..+...+.+|+++|+..+++..|+.+++.+..
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~-I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l 105 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGE-ISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGL 105 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEE-EEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcE-EEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHH
Confidence 7799999999999999999999999998888776 66666543 11244567999999998888889888765421
Q ss_pred HHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHH-HH
Q 017792 130 TLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRK-LS 178 (366)
Q Consensus 130 ~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~-L~ 178 (366)
...... -...+-++.+..-. ..++++ |++|+...||+++.. ++. +.
T Consensus 106 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~-~~~LSG--Gq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~ 182 (359)
T 3fvq_A 106 GNGKGRTAQERQRIEAMLELTGISELAGRY-PHELSG--GQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMI 182 (359)
T ss_dssp TTSSCCSHHHHHHHHHHHHHHTCGGGTTSC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred HHcCCChHHHHHHHHHHHHHcCCchHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 100000 00111122222222 245555 889998888887654 443 44
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+..++.|+|||+++|..++ +..+||+++.|++++++..+
T Consensus 183 ~~~~~~g~tvi~vTHd~~e------------------a~~~aDri~vl~~G~i~~~g 221 (359)
T 3fvq_A 183 AALRANGKSAVFVSHDREE------------------ALQYADRIAVMKQGRILQTA 221 (359)
T ss_dssp HHHHHTTCEEEEECCCHHH------------------HHHHCSEEEEEETTEEEEEE
T ss_pred HHHHhCCCEEEEEeCCHHH------------------HHHHCCEEEEEECCEEEEEe
Confidence 5556789999999998765 45578888888877765543
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-15 Score=136.84 Aligned_cols=157 Identities=18% Similarity=0.246 Sum_probs=104.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H-H----HHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-S----LAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~-~----~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... . . +.+.+|+.+|+..+++..++.+.+.+
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~-I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~ 106 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE-VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL 106 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE-EEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceE-EEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHH
Confidence 7799999999999999999999999988887776 6777654322 1 1 23469999999988888888887655
Q ss_pred HHHHHhcCC-------------ceEEEEec-ccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 128 VDTLIRSGS-------------VDVVVVDS-VAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 128 ~~~~~~~~~-------------~~lvviDs-l~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
......... ...+-++. .... +..++++ |++|+...||+++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LSg--Gq~QRv~iAral~~~p~llllDEPts~LD~~~~~~ 183 (235)
T 3tif_A 107 PLIFKYRGAMSGEERRKRALECLKMAELEERFANH-KPNQLSG--GQQQRVAIARALANNPPIILADQPTWALDSKTGEK 183 (235)
T ss_dssp HHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTC-CGGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhC-ChhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 321110000 00000111 1011 1244555 888988888887654
Q ss_pred HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 174 LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 174 L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+..+...+++ .|+|||+++|..+. . .+||+++.|+++.++..
T Consensus 184 i~~~l~~l~~~~g~tvi~vtHd~~~------------------~-~~~d~i~~l~~G~i~~~ 226 (235)
T 3tif_A 184 IMQLLKKLNEEDGKTVVVVTHDINV------------------A-RFGERIIYLKDGEVERE 226 (235)
T ss_dssp HHHHHHHHHHHHCCEEEEECSCHHH------------------H-TTSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHH------------------H-HhCCEEEEEECCEEEEE
Confidence 5555555543 59999999997642 2 46899999987765443
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.7e-16 Score=144.16 Aligned_cols=157 Identities=13% Similarity=0.159 Sum_probs=106.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC------------C----HHHHhhcccccCcceecCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL------------D----PSLAETIGVKTENLLLAQP 118 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~------------~----~~~~~~ig~~~~~~~~~~~ 118 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.... . ..+.+.+|+.+|+..++..
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ 107 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA-IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSH 107 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCC
Confidence 7799999999999999999999999988877776 566665432 1 1345679999999888777
Q ss_pred CCHHHHHHHHH-HHHhcC------C----ceEEEEecc-cccCCCCccCCccchhhHHHHHHHHHHH-------------
Q 017792 119 DCGEQALSLVD-TLIRSG------S----VDVVVVDSV-AALVPKGELDGEMGDAHMAMQARLMSQA------------- 173 (366)
Q Consensus 119 ~~~e~~l~~~~-~~~~~~------~----~~lvviDsl-~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------- 173 (366)
.|+.+.+.+.. ...... . ...+-++.. .... ...+++ |++|+...||+++..
T Consensus 108 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-~~~LSg--Gq~qRv~lAraL~~~p~lllLDEPts~L 184 (262)
T 1b0u_A 108 MTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY-PVHLSG--GQQQRVSIARALAMEPDVLLFDEPTSAL 184 (262)
T ss_dssp SCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC-GGGSCH--HHHHHHHHHHHHHTCCSEEEEESTTTTS
T ss_pred CcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 88888876532 110000 0 000001111 1111 234554 888888888887764
Q ss_pred -------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 -------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 -------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+..+...+++.|+|||+++|..+. +..+||+++.|.++.++.
T Consensus 185 D~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~------------------~~~~~d~v~~l~~G~i~~ 233 (262)
T 1b0u_A 185 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGF------------------ARHVSSHVIFLHQGKIEE 233 (262)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEECSCHHH------------------HHHHCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 556666665569999999997654 556789999998765443
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-15 Score=138.58 Aligned_cols=154 Identities=20% Similarity=0.216 Sum_probs=109.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVD-- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-- 129 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++..... ..+++.+++.+|+..+..+.++.+.+.+..
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~-I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 112 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGE-CHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAP 112 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCE-EEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcE-EEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhh
Confidence 7899999999999999999999999998888886 6677654332 356677999999887777778887765421
Q ss_pred -----------HHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHH------H-------------------
Q 017792 130 -----------TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ------A------------------- 173 (366)
Q Consensus 130 -----------~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~------~------------------- 173 (366)
..+.... ++.+..-. ...+++ |++|+...||+++. .
T Consensus 113 ~~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LSg--Gq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~ 184 (266)
T 4g1u_C 113 YGGSQDRQALQQVMAQTD-----CLALAQRD-YRVLSG--GEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQ 184 (266)
T ss_dssp SCSTTHHHHHHHHHHHTT-----CSTTTTSB-GGGCCH--HHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHH
T ss_pred cCcHHHHHHHHHHHHHcC-----ChhHhcCC-cccCCH--HHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHH
Confidence 1111111 11111111 234555 89999999999987 3
Q ss_pred -HHHHHHHhhh-cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 -LRKLSHSLSL-SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 -L~~L~~~l~~-~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+..+.+.+++ .++|||+++|..+. +..+||+++.|++++++..+
T Consensus 185 ~i~~~l~~l~~~~~~tvi~vtHdl~~------------------~~~~~d~v~vl~~G~i~~~g 230 (266)
T 4g1u_C 185 HTLRLLRQLTRQEPLAVCCVLHDLNL------------------AALYADRIMLLAQGKLVACG 230 (266)
T ss_dssp HHHHHHHHHHHHSSEEEEEECSCHHH------------------HHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEEcCHHH------------------HHHhCCEEEEEECCEEEEEc
Confidence 5555555544 46899999997764 56679999999987766554
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.6e-16 Score=143.47 Aligned_cols=157 Identities=17% Similarity=0.201 Sum_probs=105.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC----C-HHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.... . ..+.+.+|+.+|+..++...++.+.+.+..
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~ 125 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGE-IIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAP 125 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcE-EEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHH
Confidence 7899999999999999999999999988877776 566664331 1 234677999999988777788988876532
Q ss_pred -HHHhcC------C----ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 130 -TLIRSG------S----VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 130 -~~~~~~------~----~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
...... . ...+-++....-. ...+++ |++|+...||+++.. +.++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LSg--GqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l 202 (263)
T 2olj_A 126 MKVRKWPREKAEAKAMELLDKVGLKDKAHAY-PDSLSG--GQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVM 202 (263)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHTTCGGGTTSC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCchHhcCC-hhhCCH--HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 110000 0 0000011111111 234444 888888888877653 55666
Q ss_pred HHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
..+++.|+|||+++|..+. +..+||+++.|+++.++.
T Consensus 203 ~~l~~~g~tvi~vtHd~~~------------------~~~~~d~v~~l~~G~i~~ 239 (263)
T 2olj_A 203 KQLANEGMTMVVVTHEMGF------------------AREVGDRVLFMDGGYIIE 239 (263)
T ss_dssp HHHHHTTCEEEEECSCHHH------------------HHHHCSEEEEEETTEEEE
T ss_pred HHHHhCCCEEEEEcCCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 6555569999999997654 566789999998765543
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-15 Score=135.14 Aligned_cols=157 Identities=17% Similarity=0.176 Sum_probs=102.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H----HH-HhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P----SL-AETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~----~~-~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... . .+ .+.+++.+|+..++...++.+.+.+
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~ 105 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGK-VFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIV 105 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEE-EEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHh
Confidence 7799999999999999999999999988877776 5666654322 1 12 3679999999888777888887765
Q ss_pred HHHHHhcC------C----ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIRSG------S----VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~~~------~----~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
........ . ...+-++...... ...+++ |++|+...||+++.. +..+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~ 182 (224)
T 2pcj_A 106 PMLKMGKPKKEAKERGEYLLSELGLGDKLSRK-PYELSG--GEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI 182 (224)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCC-GGGSCH--HHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 32211000 0 0000011111111 234444 778877777776543 5555
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
...+++.|.|||+++|..+. + .+||+++.|+++.++..
T Consensus 183 l~~l~~~g~tvi~vtHd~~~------------------~-~~~d~v~~l~~G~i~~~ 220 (224)
T 2pcj_A 183 FLKINEGGTSIVMVTHEREL------------------A-ELTHRTLEMKDGKVVGE 220 (224)
T ss_dssp HHHHHHTTCEEEEECSCHHH------------------H-TTSSEEEEEETTEEEEE
T ss_pred HHHHHHCCCEEEEEcCCHHH------------------H-HhCCEEEEEECCEEEEE
Confidence 55555559999999997543 3 46899988887665444
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=99.56 E-value=7.1e-16 Score=147.50 Aligned_cols=157 Identities=15% Similarity=0.183 Sum_probs=105.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||++.+++...+..|. +++++....+ +...+.+|+.+|+..+++..|+.+++.+......
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~-I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~ 101 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR-ILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK 101 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEE-EEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcE-EEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC
Confidence 7799999999999999999999999988887776 6677654432 2446789999999988888899998876433211
Q ss_pred cCCc-------eEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-hcC
Q 017792 134 SGSV-------DVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS-LSQ 185 (366)
Q Consensus 134 ~~~~-------~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~-~~~ 185 (366)
.... ..+-++.+..-. ..++++ |++|+...||+++.. ++.+.+.+. +.|
T Consensus 102 ~~~~~~v~~~l~~~~L~~~~~~~-~~~LSg--Gq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g 178 (348)
T 3d31_A 102 IKDPKRVLDTARDLKIEHLLDRN-PLTLSG--GEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNK 178 (348)
T ss_dssp CCCHHHHHHHHHHTTCTTTTTSC-GGGSCH--HHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHcCCchHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcC
Confidence 1110 000011111111 234444 788888888876553 555555543 469
Q ss_pred cEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 186 TILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 186 ~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+|+|+++|...+ +..+||+++.|+++.++.
T Consensus 179 ~tii~vTHd~~~------------------~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 179 LTVLHITHDQTE------------------ARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp CEEEEEESCHHH------------------HHHHCSEEEEESSSCEEE
T ss_pred CEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 999999997765 444677777777665543
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.3e-15 Score=136.65 Aligned_cols=159 Identities=17% Similarity=0.171 Sum_probs=104.0
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
-+++|++++|+||||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+..++...|+.+.+.+..
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~ 107 (257)
T 1g6h_A 29 SVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGR-VYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGE 107 (257)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE-EEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGG
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHH
Confidence 37899999999999999999999999988877776 5666654322 123557999999887777778877765421
Q ss_pred HH-Hhc-----------CCce--E----EEEec--ccccCC--CCccCCccchhhHHHHHHHHHHH--------------
Q 017792 130 TL-IRS-----------GSVD--V----VVVDS--VAALVP--KGELDGEMGDAHMAMQARLMSQA-------------- 173 (366)
Q Consensus 130 ~~-~~~-----------~~~~--l----vviDs--l~~l~~--~~~l~~~~g~~~~~~~ar~l~~~-------------- 173 (366)
.. ... .... . -+++. +..... ...+++ |++|+...||+++..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg--GqkQrv~iAraL~~~p~lllLDEPts~LD 185 (257)
T 1g6h_A 108 ICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSG--GQMKLVEIGRALMTNPKMIVMDEPIAGVA 185 (257)
T ss_dssp TSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCH--HHHHHHHHHHHHHTCCSEEEEESTTTTCC
T ss_pred hhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCH--HHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 10 000 0000 0 00111 111111 133444 888888888887664
Q ss_pred ------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 ------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 ------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+..+.+.+++.|+|||+++|..+. +..+||+++.|+++.++.
T Consensus 186 ~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~------------------~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 186 PGLAHDIFNHVLELKAKGITFLIIEHRLDI------------------VLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECSCCST------------------TGGGCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 556666665569999999997754 556789999888765443
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-15 Score=140.93 Aligned_cols=131 Identities=15% Similarity=0.055 Sum_probs=93.2
Q ss_pred CcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC--CCCCCHHHHhhcccccCcce
Q 017792 37 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA--EHALDPSLAETIGVKTENLL 114 (366)
Q Consensus 37 ~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~--e~~~~~~~~~~ig~~~~~~~ 114 (366)
..++||++.||.+| ||+++|.+++|+||||+|||||+++++.. .+++|+|++. ++..+ .
T Consensus 104 ~~i~TGi~~LD~lL--GGi~~gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~~eE~v~--------~------ 164 (331)
T 2vhj_A 104 GELVGCSPVVAEFG--GHRYASGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATVRFGEPLS--------G------ 164 (331)
T ss_dssp TTCCSBCCEEEEET--TEEEESEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEEEBSCSST--------T------
T ss_pred hccccCcHHHHHHh--CCCCCCcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEecchhhhh--------h------
Confidence 45889999999999 69999999999999999999999999876 4667899988 33211 0
Q ss_pred ecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecC
Q 017792 115 LAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 194 (366)
Q Consensus 115 ~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~ 194 (366)
+. ...++.+..+...+...+ ++|||++..+.+...-...+| .+.+.+.+.++.|...+++.|+++|++++.
T Consensus 165 -~~-~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~s~~G-----~v~~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 165 -YN-TDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGNTTSG-----GISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp -CB-CCHHHHHHHHHHHHHHCS--EEEEECCTTTC----------------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred -hh-cCHHHHHHHHHHHHhhCC--EEEEecccccccccccccccc-----hHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 11 456777766665555544 999999999864322111112 234556677888888878889999998774
Q ss_pred C
Q 017792 195 R 195 (366)
Q Consensus 195 ~ 195 (366)
.
T Consensus 236 ~ 236 (331)
T 2vhj_A 236 T 236 (331)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-15 Score=146.35 Aligned_cols=158 Identities=16% Similarity=0.251 Sum_probs=107.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... +...+.+|+.+|+..+++..|+.+++.+......
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~-I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~ 104 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK-IYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRK 104 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE-EEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTT
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCceE-EEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcC
Confidence 6799999999999999999999999988887776 6677654322 2234679999999988888899888766432110
Q ss_pred cCC----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-
Q 017792 134 SGS----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS- 182 (366)
Q Consensus 134 ~~~----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~- 182 (366)
... ...+-++.+..-. ..++++ |++|+...||+++.. ++.+.+.+.
T Consensus 105 ~~~~~~~~~v~~~l~~~~L~~~~~r~-~~~LSG--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 181 (362)
T 2it1_A 105 APREEIDKKVREVAKMLHIDKLLNRY-PWQLSG--GQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK 181 (362)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCTTCC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCchHhhCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHH
Confidence 000 0011112221111 234555 888888888887654 555555543
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.|+|+|+++|..++ +..+||+++.|+++.++..
T Consensus 182 ~~g~tvi~vTHd~~~------------------a~~~adri~vl~~G~i~~~ 215 (362)
T 2it1_A 182 ELGITTVYVTHDQAE------------------ALAMADRIAVIREGEILQV 215 (362)
T ss_dssp HHTCEEEEEESCHHH------------------HHHHCSEEEEEETTEEEEE
T ss_pred hCCCEEEEECCCHHH------------------HHHhCCEEEEEECCEEEEE
Confidence 459999999997665 4557888888887765543
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.3e-15 Score=136.20 Aligned_cols=157 Identities=17% Similarity=0.133 Sum_probs=102.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcc-eecCCCCHHHHHHHHHHH-H
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENL-LLAQPDCGEQALSLVDTL-I 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~-~~~~~~~~e~~l~~~~~~-~ 132 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.......+.+.+|+.+|+. ..+...++.+.+.+.... .
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~-I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~ 108 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGD-VLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFY 108 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE-EEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE-EEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcC
Confidence 7799999999999999999999999988877776 566664432224556799999985 344567888877653211 0
Q ss_pred hcCCc--------eEEEEe--cccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 133 RSGSV--------DVVVVD--SVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 133 ~~~~~--------~lvviD--sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
..... ..+-++ ...... ...+++ |++|+...||+++.. +..+...++
T Consensus 109 ~~~~~~~~~~~~l~~~gl~~~~~~~~~-~~~LSg--Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 185 (266)
T 2yz2_A 109 PDRDPVPLVKKAMEFVGLDFDSFKDRV-PFFLSG--GEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK 185 (266)
T ss_dssp TTSCSHHHHHHHHHHTTCCHHHHTTCC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCcCCcccccCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence 00000 000011 111111 134444 888888888877653 555555555
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+.|.|||+++|..+. +..+||+++.|+++.++.
T Consensus 186 ~~g~tii~vtHd~~~------------------~~~~~d~v~~l~~G~i~~ 218 (266)
T 2yz2_A 186 TLGKTVILISHDIET------------------VINHVDRVVVLEKGKKVF 218 (266)
T ss_dssp HTTCEEEEECSCCTT------------------TGGGCSEEEEEETTEEEE
T ss_pred HcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 459999999997654 556789999988765443
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.3e-15 Score=142.59 Aligned_cols=158 Identities=18% Similarity=0.211 Sum_probs=106.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHH-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI- 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~- 132 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... +...+.+|+.+|+..+++..|+.+++.+.....
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~-I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~ 104 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE-IYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARR 104 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEE-EEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSC
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccE-EEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcC
Confidence 6799999999999999999999999988887776 6677654322 223467999999998888889988876521100
Q ss_pred ---hcCC------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh-h
Q 017792 133 ---RSGS------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-S 182 (366)
Q Consensus 133 ---~~~~------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l-~ 182 (366)
.... ...+-++.+..-. ..++++ |++|+...||+++.. ++.+.+.+ +
T Consensus 105 ~~~~~~~~~v~~~l~~~~L~~~~~r~-~~~LSg--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 181 (359)
T 2yyz_A 105 ISKDEVEKRVVEIARKLLIDNLLDRK-PTQLSG--GQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQ 181 (359)
T ss_dssp SHHHHTTHHHHHHHHHTTCGGGTTSC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 0000 0011112222222 244555 888888888887654 55555444 3
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.|+|+|+++|..++ +..+||+++.|++++++..
T Consensus 182 ~~g~tvi~vTHd~~~------------------~~~~adri~vl~~G~i~~~ 215 (359)
T 2yyz_A 182 ELGITSVYVTHDQAE------------------AMTMASRIAVFNQGKLVQY 215 (359)
T ss_dssp HHCCEEEEEESCHHH------------------HHHHCSEEEEEETTEEEEE
T ss_pred hcCCEEEEEcCCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 459999999997765 4456788888877765543
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.8e-15 Score=142.91 Aligned_cols=157 Identities=13% Similarity=0.209 Sum_probs=101.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTL-- 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~-- 131 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... +...+.+|+.+|+..+++..|+.+++.+....
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~-I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~ 112 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR-IYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKK 112 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE-EEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--C
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCceE-EEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcC
Confidence 7799999999999999999999999988887776 6677654322 22346799999998888888888876542100
Q ss_pred ---------HhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 132 ---------IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 132 ---------~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
+.. -...+-++.+..-. ..++++ |++|+...||+++.. ++.+.+.+.
T Consensus 113 ~~~~~~~~~v~~-~l~~~~L~~~~~r~-~~~LSG--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 188 (372)
T 1v43_A 113 FPKDEIDKRVRW-AAELLQIEELLNRY-PAQLSG--GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ 188 (372)
T ss_dssp CCHHHHHHHHHH-HHHHTTCGGGTTSC-TTTCCS--SCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHHHcCChhHhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence 000 00111122222222 245666 899999999988764 555555443
Q ss_pred -hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 183 -LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 183 -~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.|+|+|+++|...+ +..+||+++.|+++.++..
T Consensus 189 ~~~g~tvi~vTHd~~~------------------a~~~adri~vl~~G~i~~~ 223 (372)
T 1v43_A 189 QKLKVTTIYVTHDQVE------------------AMTMGDRIAVMNRGQLLQI 223 (372)
T ss_dssp HHHTCEEEEEESCHHH------------------HHHHCSEEEEEETTEEEEE
T ss_pred HhCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEe
Confidence 459999999997665 4456888888887765543
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-15 Score=145.97 Aligned_cols=158 Identities=21% Similarity=0.246 Sum_probs=107.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... +...+.+|+.+|+..+++..|+.+++.+......
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~-I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~ 116 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLERPTKGD-VWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKR 116 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEE-EEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTT
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccE-EEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC
Confidence 7799999999999999999999999988887776 6676654322 2345679999999988888899888766432210
Q ss_pred cC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-
Q 017792 134 SG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS- 182 (366)
Q Consensus 134 ~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~- 182 (366)
.. -...+-++.+..-. ..++++ |++|+...||+++.. ++.+.+.+.
T Consensus 117 ~~~~~~~~~v~~~l~~~gL~~~~~r~-~~~LSG--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 193 (355)
T 1z47_A 117 VPKDEMDARVRELLRFMRLESYANRF-PHELSG--GQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD 193 (355)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTSC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCChhHhcCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 00 00111112222212 234555 888888888887654 555555543
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.|+|+|+++|..++ +..+||+++.|+++.++..
T Consensus 194 ~~g~tvi~vTHd~~~------------------a~~~adri~vl~~G~i~~~ 227 (355)
T 1z47_A 194 EMGVTSVFVTHDQEE------------------ALEVADRVLVLHEGNVEQF 227 (355)
T ss_dssp HHTCEEEEECSCHHH------------------HHHHCSEEEEEETTEEEEE
T ss_pred hcCCEEEEECCCHHH------------------HHHhCCEEEEEECCEEEEE
Confidence 459999999997765 4556888888887765543
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-15 Score=146.97 Aligned_cols=159 Identities=16% Similarity=0.199 Sum_probs=108.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-------HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-------~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... +...+.+|+++|+..+++..|+.+++.+
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~-I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~ 104 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ-IYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAF 104 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEE-EEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHH
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccE-EEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHH
Confidence 6799999999999999999999999988887776 5666543211 1234679999999988888899988776
Q ss_pred HHHHHhcCC----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIRSGS----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~~~~----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
......... ...+-++.+..-. ..++++ |++|+...||+++.. ++.+
T Consensus 105 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-~~~LSG--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~ 181 (372)
T 1g29_1 105 PLKLRKVPRQEIDQRVREVAELLGLTELLNRK-PRELSG--GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE 181 (372)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCC-GGGSCH--HHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCchHhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHH
Confidence 432210000 0111112222222 245555 889999999988764 5555
Q ss_pred HHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 178 SHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 178 ~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
.+.+. +.|+|+|+++|...+ +..+||+++.|+++.++..+
T Consensus 182 l~~l~~~~g~tvi~vTHd~~~------------------a~~~adri~vl~~G~i~~~g 222 (372)
T 1g29_1 182 LKKLQRQLGVTTIYVTHDQVE------------------AMTMGDRIAVMNRGVLQQVG 222 (372)
T ss_dssp HHHHHHHHTCEEEEEESCHHH------------------HHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHhcCCEEEEECCCHHH------------------HHHhCCEEEEEeCCEEEEeC
Confidence 55443 459999999997665 45578888888877665443
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-15 Score=137.86 Aligned_cols=157 Identities=15% Similarity=0.184 Sum_probs=103.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHH-HhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSL-AETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~-~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++..... ..+ .+.+|+.+|+..++...|+.+.+.+...
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~ 107 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGK-IIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAY 107 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE-EEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhh
Confidence 7799999999999999999999999988877776 5666654322 223 3459999999887777788887754310
Q ss_pred HHhcCCc-e-E--EEEec---ccccC--CCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh
Q 017792 131 LIRSGSV-D-V--VVVDS---VAALV--PKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 181 (366)
Q Consensus 131 ~~~~~~~-~-l--vviDs---l~~l~--~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l 181 (366)
....... . . -+++. +.... +...+++ |++|+...||+++.. +..+...+
T Consensus 108 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSg--Gq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~ 185 (240)
T 1ji0_A 108 NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSG--GEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKI 185 (240)
T ss_dssp TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCH--HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCH--HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 0000000 0 0 00111 11111 1234444 888888888887653 55555555
Q ss_pred hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 182 ~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
++.|+|||+++|..+. +..+||+++.|.++.++
T Consensus 186 ~~~g~tvi~vtHd~~~------------------~~~~~d~v~~l~~G~i~ 218 (240)
T 1ji0_A 186 NQEGTTILLVEQNALG------------------ALKVAHYGYVLETGQIV 218 (240)
T ss_dssp HHTTCCEEEEESCHHH------------------HHHHCSEEEEEETTEEE
T ss_pred HHCCCEEEEEecCHHH------------------HHHhCCEEEEEECCEEE
Confidence 5579999999997654 55678999998876543
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-14 Score=132.03 Aligned_cols=156 Identities=17% Similarity=0.206 Sum_probs=99.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHH--HhhcCCeEEEEeCCCCCC--H-HH-HhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAE--AQRQGGYCVFIDAEHALD--P-SL-AETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~--~~~~gg~vl~id~e~~~~--~-~~-~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++. +.+..|. +++++..... . .+ ...+++.+|+..++...++.+++.+.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~-I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 104 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGE-ILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLA 104 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEE-EEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceE-EEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHH
Confidence 779999999999999999999999987 5566675 6666654322 2 22 33488999998887778888877653
Q ss_pred HHHHhcC--C-------c----eEEEEe-cccccCCCCc-cCCccchhhHHHHHHHHHHH--------------------
Q 017792 129 DTLIRSG--S-------V----DVVVVD-SVAALVPKGE-LDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 129 ~~~~~~~--~-------~----~lvviD-sl~~l~~~~~-l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
....... . . ..+-++ .+..-. ... +++ |++|+...||+++..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~~LSg--GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~ 181 (250)
T 2d2e_A 105 LQAKLGREVGVAEFWTKVKKALELLDWDESYLSRY-LNEGFSG--GEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKV 181 (250)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSB-TTCC------HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHH
T ss_pred HHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-cccCCCH--HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHH
Confidence 3211100 0 0 000011 111111 123 555 899999999988764
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeee-ceEEEEEEEecee
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFY-ASVRLNIKRIGLV 232 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~-ad~~i~l~~~~~~ 232 (366)
+.++...+++.|+|||+++|..+. +..+ ||+++.|+++.++
T Consensus 182 l~~~l~~l~~~g~tvi~vtHd~~~------------------~~~~~~d~v~~l~~G~i~ 223 (250)
T 2d2e_A 182 VARGVNAMRGPNFGALVITHYQRI------------------LNYIQPDKVHVMMDGRVV 223 (250)
T ss_dssp HHHHHHHHCSTTCEEEEECSSSGG------------------GGTSCCSEEEEEETTEEE
T ss_pred HHHHHHHHHhcCCEEEEEecCHHH------------------HHHhcCCEEEEEECCEEE
Confidence 566666665569999999997654 4445 5888888766543
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.51 E-value=6.4e-15 Score=134.07 Aligned_cols=151 Identities=12% Similarity=0.121 Sum_probs=101.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHH----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVD---- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~---- 129 (366)
+++ ++++|+||||||||||++.+++...+..|. +++++..... ..+.+.+|+.+|+..++...++.+.+.+..
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~ 99 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGE-VRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVE 99 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEE-EEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSC
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcC
Confidence 678 999999999999999999999988877776 5666643321 223457999999988777778887765421
Q ss_pred ---------HHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHH
Q 017792 130 ---------TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHS 180 (366)
Q Consensus 130 ---------~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~ 180 (366)
.++.... ++...... ...+++ |++|+...||+++.. +..+...
T Consensus 100 ~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LSg--GqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~ 171 (240)
T 2onk_A 100 RVERDRRVREMAEKLG-----IAHLLDRK-PARLSG--GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRF 171 (240)
T ss_dssp HHHHHHHHHHHHHTTT-----CTTTTTCC-GGGSCH--HHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHcC-----CHHHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1111111 11111111 234444 888888888877654 5555555
Q ss_pred hh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 181 LS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 181 l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+. +.|+|||+++|..+. +..+||+++.|+++.++.
T Consensus 172 l~~~~g~tvi~vtHd~~~------------------~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 172 VQREFDVPILHVTHDLIE------------------AAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHTCCEEEEESCHHH------------------HHHHCSEEEEEETTEEEE
T ss_pred HHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 54 359999999997654 556789999998765443
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.9e-15 Score=142.75 Aligned_cols=158 Identities=18% Similarity=0.200 Sum_probs=105.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC------CHHHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL------DPSLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~------~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++...+..|. +++++.... .+...+.+|+.+|+..+++..|+.+++.+.
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~-I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~ 106 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE-LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFP 106 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEE-EEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGG
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE-EEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHH
Confidence 7799999999999999999999999988877776 566654321 123456799999998888888888887542
Q ss_pred HHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 DTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
....... -...+-++.+..-. ..++++ |++|+...||+++.. ++.+.
T Consensus 107 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~-~~~LSG--Gq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 183 (353)
T 1oxx_K 107 LTNMKMSKEEIRKRVEEVAKILDIHHVLNHF-PRELSG--AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183 (353)
T ss_dssp GTTSSCCHHHHHHHHHHHHHHTTCGGGTTSC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchHhcCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 1100000 00011112222212 244555 888888888887654 55555
Q ss_pred HHh-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 179 HSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 179 ~~l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
+.+ ++.|+|+|+++|..++ +..+||+++.|+++.++..
T Consensus 184 ~~l~~~~g~tvi~vTHd~~~------------------~~~~adri~vl~~G~i~~~ 222 (353)
T 1oxx_K 184 KEVQSRLGVTLLVVSHDPAD------------------IFAIADRVGVLVKGKLVQV 222 (353)
T ss_dssp HHHHHHHCCEEEEEESCHHH------------------HHHHCSEEEEEETTEEEEE
T ss_pred HHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEE
Confidence 554 3469999999997765 4556788888877665443
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-14 Score=131.10 Aligned_cols=151 Identities=16% Similarity=0.152 Sum_probs=101.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
+++|++++|+||||||||||++.+++.+.+. |. +++++.... . ..+.+.++|.+|+..++...++.+.+.+.
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~-i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 100 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GS-IQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD 100 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EE-EEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eE-EEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhcc
Confidence 7799999999999999999999999998888 76 566654321 2 34567799999998777767887776532
Q ss_pred -------HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH---------------------------H
Q 017792 129 -------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA---------------------------L 174 (366)
Q Consensus 129 -------~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~---------------------------L 174 (366)
..++.... ++....-. ...+++ |++|+...||+++.. +
T Consensus 101 ~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LSg--Gq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l 172 (249)
T 2qi9_C 101 KTRTELLNDVAGALA-----LDDKLGRS-TNQLSG--GEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL 172 (249)
T ss_dssp TTCHHHHHHHHHHTT-----CGGGTTSB-GGGCCH--HHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHH
T ss_pred CCcHHHHHHHHHHcC-----ChhHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHH
Confidence 11111111 11111111 233444 788888888877643 5
Q ss_pred HHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
..+...+.+.|.|||+++|..+. +..+||+++.|+++.++.
T Consensus 173 ~~~l~~l~~~g~tviivtHd~~~------------------~~~~~d~v~~l~~G~i~~ 213 (249)
T 2qi9_C 173 DKILSALSQQGLAIVMSSHDLNH------------------TLRHAHRAWLLKGGKMLA 213 (249)
T ss_dssp HHHHHHHHHTTCEEEEECSCHHH------------------HHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHhCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 55555554459999999997654 456788888888765443
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-14 Score=135.18 Aligned_cols=152 Identities=22% Similarity=0.209 Sum_probs=100.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC----C-HHHHhhcccccCcceec--CCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLA--QPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~----~-~~~~~~ig~~~~~~~~~--~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.... . ..+.+.+++.+|+..+. ...++.+.+.+
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~-I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~ 122 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYEPATSGT-VNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVIS 122 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeE-EEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHh
Confidence 7799999999999999999999999988887776 566665432 1 34567799999986532 23477776643
Q ss_pred HH-------------------HHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH---------------
Q 017792 128 VD-------------------TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------- 173 (366)
Q Consensus 128 ~~-------------------~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------- 173 (366)
.. .++.... ++...... ...+++ |++|+...||+++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----l~~~~~~~-~~~LSg--GqkqRv~lAraL~~~p~lLlLDEPts~LD~ 194 (279)
T 2ihy_A 123 GAFKSIGVYQDIDDEIRNEAHQLLKLVG-----MSAKAQQY-IGYLST--GEKQRVMIARALMGQPQVLILDEPAAGLDF 194 (279)
T ss_dssp TC---------CCHHHHHHHHHHHHHTT-----CGGGTTSB-GGGSCH--HHHHHHHHHHHHHTCCSEEEEESTTTTCCH
T ss_pred hhhhccccccCCcHHHHHHHHHHHHHcC-----ChhHhcCC-hhhCCH--HHHHHHHHHHHHhCCCCEEEEeCCccccCH
Confidence 11 0111000 11111111 234444 888888888887654
Q ss_pred -----HHHHHHHhhhcCcEE--EEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 -----LRKLSHSLSLSQTIL--IFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 -----L~~L~~~l~~~~~tV--I~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+..+...+++.|+|| |+++|..+. +..+||+++.|.++.++.
T Consensus 195 ~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~------------------~~~~~d~v~~l~~G~i~~ 243 (279)
T 2ihy_A 195 IARESLLSILDSLSDSYPTLAMIYVTHFIEE------------------ITANFSKILLLKDGQSIQ 243 (279)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEESCGGG------------------CCTTCCEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEecCHHH------------------HHHhCCEEEEEECCEEEE
Confidence 555555555458999 999997764 455788888888765443
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5.5e-14 Score=129.89 Aligned_cols=158 Identities=17% Similarity=0.190 Sum_probs=101.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH--hhcCCeEEEEeCCCCC--C-HHH-HhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFIDAEHAL--D-PSL-AETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~--~~~gg~vl~id~e~~~--~-~~~-~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++.. .+..|. +++++.... . ..+ ...+++.+|+..++...++.+++...
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~-I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~ 121 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGT-VEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTA 121 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEE-EEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeE-EEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHH
Confidence 7899999999999999999999999874 345665 667665432 2 222 33489999998887777887776543
Q ss_pred HH-HH--hcC---Cc-----eE-EEEec--cc-ccCCC--C-ccCCccchhhHHHHHHHHHHH-----------------
Q 017792 129 DT-LI--RSG---SV-----DV-VVVDS--VA-ALVPK--G-ELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 129 ~~-~~--~~~---~~-----~l-vviDs--l~-~l~~~--~-~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
.. .. ... .. .+ -+++. +. .+..+ . .+++ |++|+...||+++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSg--Gq~QRv~iAraL~~~p~lLlLDEPts~LD~~~ 199 (267)
T 2zu0_C 122 LNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG--GEKKRNDILQMAVLEPELCILDESDSGLDIDA 199 (267)
T ss_dssp HHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCH--HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHH
T ss_pred HHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCH--HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Confidence 21 10 000 00 00 00111 11 11111 1 3555 899999999988764
Q ss_pred ---HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeee-ceEEEEEEEeceee
Q 017792 174 ---LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFY-ASVRLNIKRIGLVK 233 (366)
Q Consensus 174 ---L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~-ad~~i~l~~~~~~~ 233 (366)
+..+...+++.|+|||+++|..+. +..+ ||+++.|.+++++.
T Consensus 200 ~~~l~~~l~~l~~~g~tviivtHd~~~------------------~~~~~~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 200 LKVVADGVNSLRDGKRSFIIVTHYQRI------------------LDYIKPDYVHVLYQGRIVK 245 (267)
T ss_dssp HHHHHHHHHTTCCSSCEEEEECSSGGG------------------GGTSCCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHhcCCEEEEEeeCHHH------------------HHhhcCCEEEEEECCEEEE
Confidence 556665555568999999997654 3444 78888888765443
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4e-15 Score=136.04 Aligned_cols=150 Identities=21% Similarity=0.270 Sum_probs=99.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVD-- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-- 129 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+..++. .|+.+.+.+..
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~ 109 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ-VLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPG 109 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE-EEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCCC
Confidence 7799999999999999999999999988887776 5666654322 345678999999887664 47777664311
Q ss_pred -------HHHhcCCceEEEEecccc--------cC--CCCccCCccchhhHHHHHHHHHHH-------------------
Q 017792 130 -------TLIRSGSVDVVVVDSVAA--------LV--PKGELDGEMGDAHMAMQARLMSQA------------------- 173 (366)
Q Consensus 130 -------~~~~~~~~~lvviDsl~~--------l~--~~~~l~~~~g~~~~~~~ar~l~~~------------------- 173 (366)
..+.... ++.+.. .. +...+++ |++|+...||+++..
T Consensus 110 ~~~~~~~~~l~~~~-----l~~~~~~~~~gl~~~~~~~~~~LSg--Gq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~ 182 (247)
T 2ff7_A 110 MSVEKVIYAAKLAG-----AHDFISELREGYNTIVGEQGAGLSG--GQRQRIAIARALVNNPKILIFDEATSALDYESEH 182 (247)
T ss_dssp CCHHHHHHHHHHHT-----CHHHHHTSTTGGGCBCSTTTTCCCH--HHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHH
T ss_pred CCHHHHHHHHHHhC-----hHHHHHhCcchhhhhhhCCCCCCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 0000000 111111 11 0134554 888888888887654
Q ss_pred -HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 174 -LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 174 -L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
+..+...++ .++|||+++|..+. +.. ||+++.|.++.++.
T Consensus 183 ~i~~~l~~~~-~g~tviivtH~~~~------------------~~~-~d~v~~l~~G~i~~ 223 (247)
T 2ff7_A 183 VIMRNMHKIC-KGRTVIIIAHRLST------------------VKN-ADRIIVMEKGKIVE 223 (247)
T ss_dssp HHHHHHHHHH-TTSEEEEECSSGGG------------------GTT-SSEEEEEETTEEEE
T ss_pred HHHHHHHHHc-CCCEEEEEeCCHHH------------------HHh-CCEEEEEECCEEEE
Confidence 555555554 49999999997653 333 88998888765443
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-14 Score=134.39 Aligned_cols=155 Identities=21% Similarity=0.253 Sum_probs=100.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHHHH-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLVDT- 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~- 130 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.... . ..+.+.++|.+|+..++. .|+.+.+.+...
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~ 119 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK-VLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTR 119 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE-EEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCE-EEECCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhccc
Confidence 7899999999999999999999999988877776 566664332 1 345677999999987765 488777654210
Q ss_pred ---------HHhcCCceEEEEe----cccccCC--CCccCCccchhhHHHHHHHHHHH--------------------HH
Q 017792 131 ---------LIRSGSVDVVVVD----SVAALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LR 175 (366)
Q Consensus 131 ---------~~~~~~~~lvviD----sl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~ 175 (366)
........- +++ .+..... ...+++ |++|+...||+++.. +.
T Consensus 120 ~~~~~~~~~~~~~~~~~~-~l~~l~~gl~~~~~~~~~~LSg--Gq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~ 196 (271)
T 2ixe_A 120 TPTMEEITAVAMESGAHD-FISGFPQGYDTEVGETGNQLSG--GQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQ 196 (271)
T ss_dssp CCCHHHHHHHHHHHTCHH-HHHHSTTGGGSBCCGGGTTSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHH
T ss_pred CChHHHHHHHHHHHhHHH-HHHhhhcchhhhhcCCcCCCCH--HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHH
Confidence 000000000 001 1111111 134444 888888888887654 55
Q ss_pred HHHHHhh-hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee
Q 017792 176 KLSHSLS-LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK 233 (366)
Q Consensus 176 ~L~~~l~-~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~ 233 (366)
.+...+. +.++|||+++|..+. +.. ||+++.|.++.++.
T Consensus 197 ~~l~~~~~~~g~tviivtHd~~~------------------~~~-~d~v~~l~~G~i~~ 236 (271)
T 2ixe_A 197 RLLYESPEWASRTVLLITQQLSL------------------AER-AHHILFLKEGSVCE 236 (271)
T ss_dssp HHHHHCTTTTTSEEEEECSCHHH------------------HTT-CSEEEEEETTEEEE
T ss_pred HHHHHHHhhcCCEEEEEeCCHHH------------------HHh-CCEEEEEECCEEEE
Confidence 5555554 358999999997653 343 88888888665443
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-14 Score=136.66 Aligned_cols=156 Identities=19% Similarity=0.261 Sum_probs=102.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++..... ..+++.+++++|+..++. .|+.+++.+.
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~-I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~ 154 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC-IRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT 154 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEE-EEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcE-EEECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc
Confidence 7899999999999999999999999998887776 6777765433 356788999999987764 4666654321
Q ss_pred ------HHHHhcCCceEEEEe----cccccCC--CCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 129 ------DTLIRSGSVDVVVVD----SVAALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 129 ------~~~~~~~~~~lvviD----sl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
..........- .++ .+..... ...+++ |++|+...||++... +..
T Consensus 155 ~~~~~~~~~~~~~~l~~-~i~~lp~gl~t~~~~~g~~LSG--GqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~ 231 (306)
T 3nh6_A 155 AGNDEVEAAAQAAGIHD-AIMAFPEGYRTQVGERGLKLSG--GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQA 231 (306)
T ss_dssp CCHHHHHHHHHHHTCHH-HHHHSTTGGGCEESTTSBCCCH--HHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcHH-HHHhccchhhhHhcCCcCCCCH--HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence 11110000000 001 1111111 134554 899999999988764 444
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+...+. .++|+|+++|..+. +.. ||+++.|.++.++..|
T Consensus 232 ~l~~l~-~~~Tvi~itH~l~~------------------~~~-aD~i~vl~~G~iv~~G 270 (306)
T 3nh6_A 232 SLAKVC-ANRTTIVVAHRLST------------------VVN-ADQILVIKDGCIVERG 270 (306)
T ss_dssp HHHHHH-TTSEEEEECCSHHH------------------HHT-CSEEEEEETTEEEEEE
T ss_pred HHHHHc-CCCEEEEEEcChHH------------------HHc-CCEEEEEECCEEEEEC
Confidence 444443 37899999997653 444 8999999877654443
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.5e-14 Score=129.49 Aligned_cols=144 Identities=17% Similarity=0.194 Sum_probs=94.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
+++|++++|+||||||||||++.+++.+.+..|.+. +.+.+++.+|+..++...++.+.+.+.......
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-----------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~ 96 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-----------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHIN 96 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-----------ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-----------EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcc
Confidence 779999999999999999999999999888777754 234688888887766666777766542110000
Q ss_pred ----CC-c---------eEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHH
Q 017792 135 ----GS-V---------DVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHS 180 (366)
Q Consensus 135 ----~~-~---------~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~ 180 (366)
.. . ..+-++....-. ...+++ |++|+...||+++.. +..+...
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--Gq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 173 (253)
T 2nq2_C 97 TFAKPKSHDYQVAMQALDYLNLTHLAKRE-FTSLSG--GQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLID 173 (253)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCGGGTTSB-GGGSCH--HHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHcCChHHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 00 0 000011111111 233444 888888888887664 5555555
Q ss_pred hhhc-CcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEec
Q 017792 181 LSLS-QTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 230 (366)
Q Consensus 181 l~~~-~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~ 230 (366)
+++. |+|||+++|..+. +..+||+++.|.++.
T Consensus 174 l~~~~g~tvi~vtHd~~~------------------~~~~~d~v~~l~~G~ 206 (253)
T 2nq2_C 174 LAQSQNMTVVFTTHQPNQ------------------VVAIANKTLLLNKQN 206 (253)
T ss_dssp HHHTSCCEEEEEESCHHH------------------HHHHCSEEEEEETTE
T ss_pred HHHhcCCEEEEEecCHHH------------------HHHhCCEEEEEeCCe
Confidence 5444 9999999997654 455788888887665
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-14 Score=132.28 Aligned_cols=155 Identities=15% Similarity=0.160 Sum_probs=99.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++..... ..+.+.+++.+|+..++. .|+.+.+.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~ 102 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE-ITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEG 102 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSC-EEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEEhhhCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhccC
Confidence 7799999999999999999999999998888787 5666543221 234567999999876654 3666554321
Q ss_pred -------HHHHhcCCceEEEEec----ccccC--CCCccCCccchhhHHHHHHHHHHH--------------------HH
Q 017792 129 -------DTLIRSGSVDVVVVDS----VAALV--PKGELDGEMGDAHMAMQARLMSQA--------------------LR 175 (366)
Q Consensus 129 -------~~~~~~~~~~lvviDs----l~~l~--~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~ 175 (366)
...+......- .++. +.... +...+++ |++|+...||+++.. +.
T Consensus 103 ~~~~~~~~~~l~~~~l~~-~~~~~~~gl~~~~~~~~~~LSg--Gq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~ 179 (243)
T 1mv5_A 103 DYTDEDLWQVLDLAFARS-FVENMPDQLNTEVGERGVKISG--GQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179 (243)
T ss_dssp CSCHHHHHHHHHHHTCTT-TTTSSTTGGGCEESTTSBCCCH--HHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHH
T ss_pred CCCHHHHHHHHHHhChHH-HHHhCccchhchhccCcCcCCH--HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence 00000000000 0000 00000 0134554 899999999988765 56
Q ss_pred HHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 176 KLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 176 ~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
.+...+. .++|||+++|..+. +. .||+++.|.++.++..
T Consensus 180 ~~l~~~~-~~~tvi~vtH~~~~------------------~~-~~d~v~~l~~G~i~~~ 218 (243)
T 1mv5_A 180 KALDSLM-KGRTTLVIAHRLST------------------IV-DADKIYFIEKGQITGS 218 (243)
T ss_dssp HHHHHHH-TTSEEEEECCSHHH------------------HH-HCSEEEEEETTEECCC
T ss_pred HHHHHhc-CCCEEEEEeCChHH------------------HH-hCCEEEEEECCEEEEe
Confidence 6665555 49999999997543 43 4899999987654433
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-14 Score=128.81 Aligned_cols=137 Identities=20% Similarity=0.203 Sum_probs=90.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.... .+.+.+++.+|+..++...++.+.+.+.......
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~-I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~ 108 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE-IIYNGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV 108 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEETTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE-EEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC
Confidence 7799999999999999999999999988877776 566654332 3567799999998887777998887664322110
Q ss_pred CCceEEEEecccccC-----C--CCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhhhcCcE
Q 017792 135 GSVDVVVVDSVAALV-----P--KGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLSLSQTI 187 (366)
Q Consensus 135 ~~~~lvviDsl~~l~-----~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~~~~~t 187 (366)
....-.++.+...+ . ...+++ |++|+...||+++.. +..+...+++.|.|
T Consensus 109 -~~~~~~~~~~l~~~gl~~~~~~~~~LSg--Gqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~t 185 (214)
T 1sgw_A 109 -KVNKNEIMDALESVEVLDLKKKLGELSQ--GTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 185 (214)
T ss_dssp -CCCHHHHHHHHHHTTCCCTTSBGGGSCH--HHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSE
T ss_pred -chHHHHHHHHHHHcCCCcCCCChhhCCH--HHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCE
Confidence 00000011111111 0 123333 777777777766543 55555555556899
Q ss_pred EEEEecCCcc
Q 017792 188 LIFINQVRAK 197 (366)
Q Consensus 188 VI~i~h~~~~ 197 (366)
||+++|....
T Consensus 186 iiivtHd~~~ 195 (214)
T 1sgw_A 186 VIISSREELS 195 (214)
T ss_dssp EEEEESSCCT
T ss_pred EEEEeCCHHH
Confidence 9999998765
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.8e-14 Score=128.38 Aligned_cols=152 Identities=18% Similarity=0.270 Sum_probs=97.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLVD-- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-- 129 (366)
+++|++++|+||||||||||++.+++.+.+ .|. +++++.... . ..+.+.+++.+|+..++. .|+.+.+.+..
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~-I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~ 119 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGD-IKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKLD 119 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEE-EEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeE-EEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCCC
Confidence 779999999999999999999999998764 555 667765432 1 345677999999887764 47777664310
Q ss_pred -------HHHhcCCceEEEEecccc----cC--CCCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 130 -------TLIRSGSVDVVVVDSVAA----LV--PKGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 130 -------~~~~~~~~~lvviDsl~~----l~--~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
..+......- .++.+.. .. ....+++ |++|+...||+++.. +..
T Consensus 120 ~~~~~~~~~l~~~~l~~-~~~~l~~~~~~~~~~~~~~LSg--GqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~ 196 (260)
T 2ghi_A 120 ATDEEVIKATKSAQLYD-FIEALPKKWDTIVGNKGMKLSG--GERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196 (260)
T ss_dssp CCHHHHHHHHHHTTCHH-HHHTSTTGGGCEESSSSBCCCH--HHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCHH-HHHhccccccccccCCcCcCCH--HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 0110000000 0000100 00 1134554 899999999988764 555
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
+...+++ +.|||+++|.... +. .||+++.|.++.++
T Consensus 197 ~l~~l~~-~~tviivtH~~~~------------------~~-~~d~i~~l~~G~i~ 232 (260)
T 2ghi_A 197 AVEDLRK-NRTLIIIAHRLST------------------IS-SAESIILLNKGKIV 232 (260)
T ss_dssp HHHHHTT-TSEEEEECSSGGG------------------ST-TCSEEEEEETTEEE
T ss_pred HHHHhcC-CCEEEEEcCCHHH------------------HH-hCCEEEEEECCEEE
Confidence 5555544 8999999997643 33 38888888766543
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.1e-13 Score=131.06 Aligned_cols=151 Identities=17% Similarity=0.169 Sum_probs=100.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHH----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSL---- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~---- 127 (366)
+++|++++|+||||||||||++.+++... ..|. +++++..... ..+.+.+|+.+|+..+++ .++.+++..
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~-I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~~~ 120 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGE-IQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNAAH 120 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEE-EEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTCCS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeE-EEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcccc
Confidence 78999999999999999999999998876 6665 7788765432 345678999999987764 466665531
Q ss_pred ----HHHHHhcCCceEEEEecccccCCC----------CccCCccchhhHHHHHHHHHHH--------------------
Q 017792 128 ----VDTLIRSGSVDVVVVDSVAALVPK----------GELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 128 ----~~~~~~~~~~~lvviDsl~~l~~~----------~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
+...+.... ++.+..-.|. ..+++ |++|+...||+++..
T Consensus 121 ~~~~v~~~l~~~~-----L~~~~~~~p~~l~~~i~~~g~~LSG--GqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~ 193 (390)
T 3gd7_A 121 SDQEIWKVADEVG-----LRSVIEQFPGKLDFVLVDGGCVLSH--GHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193 (390)
T ss_dssp CHHHHHHHHHHTT-----CHHHHTTSTTGGGCEECTTTTTSCH--HHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHhC-----CHHHHhhcccccccccccccccCCH--HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 111111111 1122222211 12555 899999999988764
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
++.+.+.+. .++|+|+++|..+. +. .||+++.|++++++..+
T Consensus 194 l~~~l~~~~-~~~tvi~vtHd~e~------------------~~-~aDri~vl~~G~i~~~g 235 (390)
T 3gd7_A 194 IRRTLKQAF-ADCTVILCEARIEA------------------ML-ECDQFLVIEENKVRQYD 235 (390)
T ss_dssp HHHHHHTTT-TTSCEEEECSSSGG------------------GT-TCSEEEEEETTEEEEES
T ss_pred HHHHHHHHh-CCCEEEEEEcCHHH------------------HH-hCCEEEEEECCEEEEEC
Confidence 444444332 48999999997543 32 37888888887766544
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-13 Score=137.57 Aligned_cols=156 Identities=17% Similarity=0.297 Sum_probs=102.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVD-- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-- 129 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.+..+ ..+++++++.+|++.++. .|+.+++....
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~-i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~ 443 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS-ICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAEG 443 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCE-EEECCEEhhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCCC
Confidence 7899999999999999999999999999888886 6677654322 356678999999987765 36766654321
Q ss_pred --------HHHhcCCceEEEEe----cccccCC--CCccCCccchhhHHHHHHHHHHH--------------------HH
Q 017792 130 --------TLIRSGSVDVVVVD----SVAALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LR 175 (366)
Q Consensus 130 --------~~~~~~~~~lvviD----sl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~ 175 (366)
..++.....- .++ .+..... ...+++ |++|+...||++... +.
T Consensus 444 ~~~~~~~~~~~~~~~l~~-~~~~~p~g~~t~~~~~~~~LSg--Gq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~ 520 (582)
T 3b5x_A 444 EYTREQIEQAARQAHAME-FIENMPQGLDTVIGENGTSLSG--GQRQRVAIARALLRDAPVLILDEATSALDTESERAIQ 520 (582)
T ss_pred CCCHHHHHHHHHHCCCHH-HHHhCcccccchhcCCCCcCCH--HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHH
Confidence 0111000000 000 1111111 134554 899999999988764 44
Q ss_pred HHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 176 KLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 176 ~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
++...+.+ |+|+|+++|..+. +. .||+++.|++++++..|
T Consensus 521 ~~l~~~~~-~~tvi~itH~~~~------------------~~-~~d~i~~l~~G~i~~~g 560 (582)
T 3b5x_A 521 AALDELQK-NKTVLVIAHRLST------------------IE-QADEILVVDEGEIIERG 560 (582)
T ss_pred HHHHHHcC-CCEEEEEecCHHH------------------HH-hCCEEEEEECCEEEEEC
Confidence 44444443 8999999996543 33 48999999887655443
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.6e-13 Score=122.78 Aligned_cols=153 Identities=16% Similarity=0.117 Sum_probs=96.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcc-cccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIG-VKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig-~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
++ |++++|+||||||||||++.+++.. +..|. +++++..... .. .+.++ +.+|+..+ ..++.+.+.+...+.
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~-I~~~g~~~~~~~~-~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~ 101 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN-IFINGMEVRKIRN-YIRYSTNLPEAYEI--GVTVNDIVYLYEELK 101 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEE-EEETTEEGGGCSC-CTTEEECCGGGSCT--TSBHHHHHHHHHHHT
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcE-EEECCEECcchHH-hhheEEEeCCCCcc--CCcHHHHHHHhhhhc
Confidence 78 9999999999999999999999998 77776 5666532211 11 45789 99998876 678888776543211
Q ss_pred hcCCc-------eEEEEe-cccccCCCCccCCccchhhHHHHHHHHHHH-----------------HHHHHHHhhhcCcE
Q 017792 133 RSGSV-------DVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQA-----------------LRKLSHSLSLSQTI 187 (366)
Q Consensus 133 ~~~~~-------~lvviD-sl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~l~~~~~t 187 (366)
.... ..+-++ ...... ...+++ |++|+...||+++.. -..+...+++...|
T Consensus 102 -~~~~~~~~~~l~~~gl~~~~~~~~-~~~LSg--GqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~t 177 (263)
T 2pjz_A 102 -GLDRDLFLEMLKALKLGEEILRRK-LYKLSA--GQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKE 177 (263)
T ss_dssp -CCCHHHHHHHHHHTTCCGGGGGSB-GGGSCH--HHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSE
T ss_pred -chHHHHHHHHHHHcCCChhHhcCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCc
Confidence 0000 000011 111111 234444 888888888887764 22333333332229
Q ss_pred EEEEecCCcccccccCCCCeeeccCCceeeeece-EEEEEEEeceeecC
Q 017792 188 LIFINQVRAKLSTFGFGGPTEVTCGGNALKFYAS-VRLNIKRIGLVKKG 235 (366)
Q Consensus 188 VI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad-~~i~l~~~~~~~~~ 235 (366)
||+++|..+. +..+|| +++.|+++.++..+
T Consensus 178 viivtHd~~~------------------~~~~~d~~i~~l~~G~i~~~g 208 (263)
T 2pjz_A 178 GILVTHELDM------------------LNLYKEYKAYFLVGNRLQGPI 208 (263)
T ss_dssp EEEEESCGGG------------------GGGCTTSEEEEEETTEEEEEE
T ss_pred EEEEEcCHHH------------------HHHhcCceEEEEECCEEEEec
Confidence 9999997654 455788 88888877665544
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.33 E-value=4.4e-13 Score=121.04 Aligned_cols=146 Identities=15% Similarity=0.197 Sum_probs=92.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV------ 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~------ 128 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++ +++|.+|+..++.. ++.+++.+.
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g----------~i~~v~q~~~~~~~-tv~enl~~~~~~~~~ 98 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK-IKHSG----------RISFCSQFSWIMPG-TIKENIIFGVSYDEY 98 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEECS----------CEEEECSSCCCCSB-CHHHHHHTTSCCCHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccE-EEECC----------EEEEEecCCcccCC-CHHHHhhccCCcChH
Confidence 7799999999999999999999999998887776 55554 48899988776654 777776531
Q ss_pred --HHHHhcCCceEEEEeccccc----C--CCCccCCccchhhHHHHHHHHHHH-----------------HHHHHHHh-h
Q 017792 129 --DTLIRSGSVDVVVVDSVAAL----V--PKGELDGEMGDAHMAMQARLMSQA-----------------LRKLSHSL-S 182 (366)
Q Consensus 129 --~~~~~~~~~~lvviDsl~~l----~--~~~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~l-~ 182 (366)
..........- .++.+... . +...+++ |++|+...||+++.. -..+...+ .
T Consensus 99 ~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~LSg--Gqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 175 (229)
T 2pze_A 99 RYRSVIKACQLEE-DISKFAEKDNIVLGEGGITLSG--GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVC 175 (229)
T ss_dssp HHHHHHHHTTCHH-HHTTSTTGGGSCBCTTCTTSCH--HHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCC
T ss_pred HHHHHHHHhCcHH-HHHhCcccccccccCCCCcCCH--HHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHH
Confidence 11111111000 01111000 0 0134544 888888888887754 23333321 2
Q ss_pred --hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 183 --LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 183 --~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
..+.|||+++|..+. +. .||+++.|+++.++..
T Consensus 176 ~~~~~~tvi~vtH~~~~------------------~~-~~d~v~~l~~G~i~~~ 210 (229)
T 2pze_A 176 KLMANKTRILVTSKMEH------------------LK-KADKILILHEGSSYFY 210 (229)
T ss_dssp CCTTTSEEEEECCCHHH------------------HH-HCSEEEEEETTEEEEE
T ss_pred HhhCCCEEEEEcCChHH------------------HH-hCCEEEEEECCEEEEE
Confidence 238999999997543 33 3899998887655443
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-12 Score=133.52 Aligned_cols=155 Identities=17% Similarity=0.253 Sum_probs=103.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHHH--
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVD-- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~-- 129 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.+..+ ..+++++++.+|++.+++ .|+.+++....
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~-i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~ 443 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH-ILMDGHDLREYTLASLRNQVALVSQNVHLFN-DTVANNIAYARTE 443 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEE-EEETTEETTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCe-EEECCEEccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCCC
Confidence 7899999999999999999999999998887776 6777754432 356778999999987765 47777665421
Q ss_pred --------HHHhcCCceEEEEe----cccccCC--CCccCCccchhhHHHHHHHHHHH--------------------HH
Q 017792 130 --------TLIRSGSVDVVVVD----SVAALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LR 175 (366)
Q Consensus 130 --------~~~~~~~~~lvviD----sl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~ 175 (366)
..++.....- .++ .+..... ...+++ |++|+...||++... +.
T Consensus 444 ~~~~~~~~~~l~~~~l~~-~~~~~p~g~~~~~~~~~~~LSg--Gq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~ 520 (582)
T 3b60_A 444 EYSREQIEEAARMAYAMD-FINKMDNGLDTIIGENGVLLSG--GQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 520 (582)
T ss_dssp CCCHHHHHHHHHTTTCHH-HHHHSTTGGGSBCCTTSCSSCH--HHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCHH-HHHhccccccccccCCCCCCCH--HHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHH
Confidence 1111111100 001 1111111 134444 899999999998764 44
Q ss_pred HHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 176 KLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 176 ~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
++...+.+ |+|+|+++|..+. +. .||+++.|++++++..
T Consensus 521 ~~l~~~~~-~~tvi~itH~~~~------------------~~-~~d~i~~l~~G~i~~~ 559 (582)
T 3b60_A 521 AALDELQK-NRTSLVIAHRLST------------------IE-QADEIVVVEDGIIVER 559 (582)
T ss_dssp HHHHHHHT-TSEEEEECSCGGG------------------TT-TCSEEEEEETTEEEEE
T ss_pred HHHHHHhC-CCEEEEEeccHHH------------------HH-hCCEEEEEECCEEEEe
Confidence 55544444 8999999997643 33 4899999987765443
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-12 Score=116.67 Aligned_cols=141 Identities=17% Similarity=0.266 Sum_probs=90.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHH-----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVD----- 129 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~----- 129 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++ .+++.+|+..+ ...|+.+.+.+..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-I~~~g----------~i~~v~Q~~~~-~~~tv~enl~~~~~~~~~ 95 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH-VAIKG----------SVAYVPQQAWI-QNDSLRENILFGCQLEEP 95 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEE-EEECS----------CEEEECSSCCC-CSEEHHHHHHTTSCCCTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECC----------EEEEEcCCCcC-CCcCHHHHhhCccccCHH
Confidence 7899999999999999999999999998887776 55554 37888887654 3556666654311
Q ss_pred ---HHHhcCCceEEEEecccc--------c-CCCCccCCccchhhHHHHHHHHHHH-----------------HHHHHHH
Q 017792 130 ---TLIRSGSVDVVVVDSVAA--------L-VPKGELDGEMGDAHMAMQARLMSQA-----------------LRKLSHS 180 (366)
Q Consensus 130 ---~~~~~~~~~lvviDsl~~--------l-~~~~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~ 180 (366)
....... + .+.+.. + .+...+++ |++|+...||+++.. -..+...
T Consensus 96 ~~~~~~~~~~--l--~~~~~~~~~~~~~~~~~~~~~LSg--GqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ 169 (237)
T 2cbz_A 96 YYRSVIQACA--L--LPDLEILPSGDRTEIGEKGVNLSG--GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEN 169 (237)
T ss_dssp HHHHHHHHTT--C--HHHHTTSTTGGGSEESTTSBCCCH--HHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHh--h--HHHHHhccccccccccCCCCCCCH--HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 0000000 0 000000 0 11234544 888988888888764 2333333
Q ss_pred hh-----hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEecee
Q 017792 181 LS-----LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLV 232 (366)
Q Consensus 181 l~-----~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~ 232 (366)
+. ..++|||+++|..+. +. .||+++.|.++.++
T Consensus 170 l~~~~~~~~~~tviivtH~~~~------------------~~-~~d~v~~l~~G~i~ 207 (237)
T 2cbz_A 170 VIGPKGMLKNKTRILVTHSMSY------------------LP-QVDVIIVMSGGKIS 207 (237)
T ss_dssp TTSTTSTTTTSEEEEECSCSTT------------------GG-GSSEEEEEETTEEE
T ss_pred HHHHHhhcCCCEEEEEecChHH------------------HH-hCCEEEEEeCCEEE
Confidence 31 248999999997643 33 48888888766543
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-12 Score=133.80 Aligned_cols=157 Identities=18% Similarity=0.270 Sum_probs=103.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.+..+ ..+++++++.+|++.++. .|+.+++...
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~-i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~~ 455 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQ-ILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNPG 455 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEE-EEETTEEGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSSTT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeE-EEECCEEhhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCCC
Confidence 7899999999999999999999999998887776 6777654322 456788999999988774 4777766431
Q ss_pred ------HHHHhcCCceEEEEecc----cccCC--CCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 129 ------DTLIRSGSVDVVVVDSV----AALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 129 ------~~~~~~~~~~lvviDsl----~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
..........- .++.+ ..... ...+++ |++|+...||++... +.+
T Consensus 456 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~t~~~~~g~~LSg--Gq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~ 532 (598)
T 3qf4_B 456 ATDEEIKEAAKLTHSDH-FIKHLPEGYETVLTDNGEDLSQ--GQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQA 532 (598)
T ss_dssp CCTTHHHHHTTTTTCHH-HHHTSTTGGGCBCHHHHTTSCH--HHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCHH-HHHhccccccchhcCCCCCCCH--HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH
Confidence 11111100000 00111 00000 023444 889999999987653 444
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
....+. .|+|+|+++|..+. +.+ ||+++.|++++++..|+
T Consensus 533 ~l~~~~-~~~t~i~itH~l~~------------------~~~-~d~i~~l~~G~i~~~g~ 572 (598)
T 3qf4_B 533 AMWKLM-EGKTSIIIAHRLNT------------------IKN-ADLIIVLRDGEIVEMGK 572 (598)
T ss_dssp HHHHHH-TTSEEEEESCCTTH------------------HHH-CSEEEEECSSSEEECSC
T ss_pred HHHHHc-CCCEEEEEecCHHH------------------HHc-CCEEEEEECCEEEEECC
Confidence 444443 48999999997653 433 89999998877655543
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=99.29 E-value=8.8e-13 Score=134.68 Aligned_cols=156 Identities=20% Similarity=0.251 Sum_probs=102.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHH----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSL---- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~---- 127 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.+..+ ..+++++++.+|++.++.. |+.+++..
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~-i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~ 441 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ-ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRPT 441 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE-EEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE-EEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCCC
Confidence 7899999999999999999999999998888776 6777654322 4567789999999877654 66665532
Q ss_pred -----HHHHHhcCCceEEEEe----cccccCCC--CccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 128 -----VDTLIRSGSVDVVVVD----SVAALVPK--GELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 128 -----~~~~~~~~~~~lvviD----sl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
+.+........- .++ .+...... ..+++ |++|+...||++... +.+
T Consensus 442 ~~~~~~~~~~~~~~~~~-~~~~lp~g~~t~~~~~g~~LSg--Gq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~ 518 (578)
T 4a82_A 442 ATDEEVVEAAKMANAHD-FIMNLPQGYDTEVGERGVKLSG--GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE 518 (578)
T ss_dssp CCHHHHHHHHHHTTCHH-HHHTSTTGGGCBCCGGGTTSCH--HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcHH-HHHhCcchhhhhhccCCCcCCH--HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 111111111000 011 11111111 24444 899999999988764 444
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+...+. .++|+|+++|..+. +. .||+++.|++++++..|
T Consensus 519 ~l~~~~-~~~t~i~itH~l~~------------------~~-~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 519 ALDVLS-KDRTTLIVAHRLST------------------IT-HADKIVVIENGHIVETG 557 (578)
T ss_dssp HHHHHT-TTSEEEEECSSGGG------------------TT-TCSEEEEEETTEEEEEE
T ss_pred HHHHHc-CCCEEEEEecCHHH------------------HH-cCCEEEEEECCEEEEEC
Confidence 444443 47899999997653 33 38999999887665544
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-12 Score=134.25 Aligned_cols=157 Identities=16% Similarity=0.153 Sum_probs=102.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.+..+ ..+++++++.+|++.++.. |+.+++...
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~-i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~ 443 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGR-VEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRED 443 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEE-EEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcE-EEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCCC
Confidence 7899999999999999999999999998887776 6777765432 3567889999999877643 555554221
Q ss_pred ------HHHHhcCCce-EE--EEecccccCC--CCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 129 ------DTLIRSGSVD-VV--VVDSVAALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 129 ------~~~~~~~~~~-lv--viDsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
....+..... .+ .-+.+..... ...+++ |++|+...||++... +.+.
T Consensus 444 ~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSg--GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~ 521 (587)
T 3qf4_A 444 ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSG--GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDG 521 (587)
T ss_dssp CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCH--HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCH--HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH
Confidence 1111100000 00 0011111111 134444 899999999988754 4444
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
...+. .++|+|+++|..+. +. .||+++.|++++++..|
T Consensus 522 l~~~~-~~~tvi~itH~l~~------------------~~-~~d~i~vl~~G~i~~~g 559 (587)
T 3qf4_A 522 LKRYT-KGCTTFIITQKIPT------------------AL-LADKILVLHEGKVAGFG 559 (587)
T ss_dssp HHHHS-TTCEEEEEESCHHH------------------HT-TSSEEEEEETTEEEEEE
T ss_pred HHHhC-CCCEEEEEecChHH------------------HH-hCCEEEEEECCEEEEEC
Confidence 44443 48999999997643 32 58999999877655544
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.5e-12 Score=120.11 Aligned_cols=142 Identities=17% Similarity=0.244 Sum_probs=88.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHH------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV------ 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~------ 128 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++ +++|.+|+..++. .++.+.+...
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~-I~~~g----------~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~ 128 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK-IKHSG----------RISFCSQNSWIMP-GTIKENIIGVSYDEYR 128 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEE-EECCS----------CEEEECSSCCCCS-SBHHHHHHTTCCCHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcE-EEECC----------EEEEEeCCCccCc-ccHHHHhhCcccchHH
Confidence 7799999999999999999999999998887776 45554 4889998877665 3777765410
Q ss_pred -HHHHhcCCceEEEEeccccc----C--CCCccCCccchhhHHHHHHHHHHH-----------------HHHHHHHh-h-
Q 017792 129 -DTLIRSGSVDVVVVDSVAAL----V--PKGELDGEMGDAHMAMQARLMSQA-----------------LRKLSHSL-S- 182 (366)
Q Consensus 129 -~~~~~~~~~~lvviDsl~~l----~--~~~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~l-~- 182 (366)
..........- .++.+... . +...+++ |++|+...||+++.. -..+...+ +
T Consensus 129 ~~~~~~~~~l~~-~l~~~~~~~~~~~~~~~~~LSg--Gq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~ 205 (290)
T 2bbs_A 129 YRSVIKACQLEE-DISKFAEKDNIVLGEGGITLSG--GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 205 (290)
T ss_dssp HHHHHHHTTCHH-HHHTSTTGGGCBC----CCCCH--HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCC
T ss_pred HHHHHHHhChHH-HHHhccccccchhcCccCcCCH--HHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 00111000000 00111000 0 0134554 888888888887754 22333321 1
Q ss_pred -hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEec
Q 017792 183 -LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG 230 (366)
Q Consensus 183 -~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~ 230 (366)
..++|||+++|.... +. .||+++.|.++.
T Consensus 206 ~~~~~tviivtHd~~~------------------~~-~~d~i~~l~~G~ 235 (290)
T 2bbs_A 206 LMANKTRILVTSKMEH------------------LK-KADKILILHEGS 235 (290)
T ss_dssp CTTTSEEEEECCCHHH------------------HH-HSSEEEEEETTE
T ss_pred hhCCCEEEEEecCHHH------------------HH-cCCEEEEEECCe
Confidence 238999999997543 33 489888887654
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.8e-12 Score=130.29 Aligned_cols=142 Identities=15% Similarity=0.202 Sum_probs=92.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHH-HHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV-DTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~-~~~~~ 133 (366)
+++|++++|+||||||||||++.+++.+.+..|.+.+ ...++|.+|+.......++.+++... .....
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~ 447 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-----------DLTVAYKPQYIKAEYEGTVYELLSKIDSSKLN 447 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-----------eeEEEEEecCccCCCCCcHHHHHHhhhccCCC
Confidence 5789999999999999999999999988887776433 13588999987665666787766543 11110
Q ss_pred cC-----CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-hcCcE
Q 017792 134 SG-----SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS-LSQTI 187 (366)
Q Consensus 134 ~~-----~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~-~~~~t 187 (366)
.. -...+-++....- +-..+++ |++|+...||+++.. +.++.+.+. +.|.|
T Consensus 448 ~~~~~~~~l~~~~l~~~~~~-~~~~LSG--Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t 524 (607)
T 3bk7_A 448 SNFYKTELLKPLGIIDLYDR-NVEDLSG--GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 524 (607)
T ss_dssp CHHHHHHTHHHHTCTTTTTS-BGGGCCH--HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHcCCchHhcC-ChhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 00 0000001111111 1234444 788888888877653 445554443 56999
Q ss_pred EEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 188 LIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 188 VI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
||+++|.... +..+||+++.|+.
T Consensus 525 vi~vsHd~~~------------------~~~~adrv~vl~~ 547 (607)
T 3bk7_A 525 ALVVEHDVLM------------------IDYVSDRLIVFEG 547 (607)
T ss_dssp EEEECSCHHH------------------HHHHCSEEEEEEE
T ss_pred EEEEeCCHHH------------------HHHhCCEEEEEcC
Confidence 9999997764 5667899988874
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.19 E-value=4e-12 Score=128.53 Aligned_cols=142 Identities=15% Similarity=0.204 Sum_probs=92.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHH-HHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV-DTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~-~~~~~ 133 (366)
+++|++++|+||||||||||++.+++...+..|.+.+ ...+++.+|+.......++.+++... .....
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-----------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~ 377 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-----------DLTVAYKPQYIKADYEGTVYELLSKIDASKLN 377 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-----------CceEEEEecCCcCCCCCcHHHHHHhhhccCCC
Confidence 4789999999999999999999999988877776432 13588888887665566777765543 11100
Q ss_pred cC-----CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh-hcCcE
Q 017792 134 SG-----SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS-LSQTI 187 (366)
Q Consensus 134 ~~-----~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~-~~~~t 187 (366)
.. -...+-+.....- +...+++ |++|+...||+++.. +..+...+. +.|.|
T Consensus 378 ~~~~~~~~l~~~~l~~~~~~-~~~~LSG--Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~t 454 (538)
T 1yqt_A 378 SNFYKTELLKPLGIIDLYDR-EVNELSG--GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 454 (538)
T ss_dssp CHHHHHHTTTTTTCGGGTTS-BGGGCCH--HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHcCChhhhcC-ChhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCE
Confidence 00 0000001111111 1234444 788888888877653 445554443 56999
Q ss_pred EEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 188 LIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 188 VI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
||+++|.... +..+||+++.|+.
T Consensus 455 vi~vsHd~~~------------------~~~~~drv~vl~~ 477 (538)
T 1yqt_A 455 ALVVEHDVLM------------------IDYVSDRLMVFEG 477 (538)
T ss_dssp EEEECSCHHH------------------HHHHCSEEEEEEE
T ss_pred EEEEeCCHHH------------------HHHhCCEEEEEeC
Confidence 9999998765 5667899988875
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.6e-11 Score=122.45 Aligned_cols=144 Identities=16% Similarity=0.215 Sum_probs=90.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR- 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~- 133 (366)
+++|++++|+||||||||||++.+++...+..|.+. ++. ..+++.+|++......++.+.+........
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~~---------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~ 360 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVT-PEK---------QILSYKPQRIFPNYDGTVQQYLENASKDALS 360 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEE-SSC---------CCEEEECSSCCCCCSSBHHHHHHHHCSSTTC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECC---------eeeEeechhcccccCCCHHHHHHHhhhhccc
Confidence 689999999999999999999999999888878743 321 246677776554445566666544210000
Q ss_pred cCC------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh-hhcCc
Q 017792 134 SGS------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-SLSQT 186 (366)
Q Consensus 134 ~~~------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l-~~~~~ 186 (366)
... ...+-+.....-. ...+++ |++|+...||+++.. +.++.+.+ ++.++
T Consensus 361 ~~~~~~~~~l~~~~l~~~~~~~-~~~LSG--Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~ 437 (538)
T 3ozx_A 361 TSSWFFEEVTKRLNLHRLLESN-VNDLSG--GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKA 437 (538)
T ss_dssp TTSHHHHHTTTTTTGGGCTTSB-GGGCCH--HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHcCCHHHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 000 0000001111111 234444 778888888877653 44444444 35699
Q ss_pred EEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEe
Q 017792 187 ILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI 229 (366)
Q Consensus 187 tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~ 229 (366)
|||+++|.... +..+||+++.|+..
T Consensus 438 tvi~vsHdl~~------------------~~~~aDri~vl~~~ 462 (538)
T 3ozx_A 438 VTFIIDHDLSI------------------HDYIADRIIVFKGE 462 (538)
T ss_dssp EEEEECSCHHH------------------HHHHCSEEEEEEEE
T ss_pred EEEEEeCCHHH------------------HHHhCCEEEEEeCC
Confidence 99999998765 56689999999863
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.3e-11 Score=133.21 Aligned_cols=155 Identities=15% Similarity=0.231 Sum_probs=100.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHH----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSL---- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~---- 127 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.+... ..+++++++++|++.++. .|+.+++..
T Consensus 1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~-I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~ 1133 (1284)
T 3g5u_A 1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS-VFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNS 1133 (1284)
T ss_dssp ECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEE-EESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE-EEECCEEcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCC
Confidence 7899999999999999999999999988887776 7788765433 356678999999886653 344444311
Q ss_pred -------HHHHHhcCCceEEEEe----cccccCC--CCccCCccchhhHHHHHHHHHHH--------------------H
Q 017792 128 -------VDTLIRSGSVDVVVVD----SVAALVP--KGELDGEMGDAHMAMQARLMSQA--------------------L 174 (366)
Q Consensus 128 -------~~~~~~~~~~~lvviD----sl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L 174 (366)
+..........- .++ .+..... ...+++ |++|+...||++... +
T Consensus 1134 ~~~~~~~i~~~~~~~~~~~-~i~~l~~gldt~vge~G~~LSg--Gq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i 1210 (1284)
T 3g5u_A 1134 RVVSYEEIVRAAKEANIHQ-FIDSLPDKYNTRVGDKGTQLSG--GQKQRIAIARALVRQPHILLLDEATSALDTESEKVV 1210 (1284)
T ss_dssp CCCCHHHHHHHHHHHTCHH-HHSSTTTGGGCBCSTTSCSSCH--HHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcHH-HHHhCccccccccCCCCCccCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 111110000000 011 1111111 124554 899999999998764 4
Q ss_pred HHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeec
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
.++...+ ..|+|||+++|..+. +.. ||+++.|++++++..
T Consensus 1211 ~~~l~~~-~~~~tvi~isH~l~~------------------i~~-~dri~vl~~G~i~~~ 1250 (1284)
T 3g5u_A 1211 QEALDKA-REGRTCIVIAHRLST------------------IQN-ADLIVVIQNGKVKEH 1250 (1284)
T ss_dssp HHHHHHH-SSSSCEEEECSCTTG------------------GGS-CSEEEEEETBEEEEE
T ss_pred HHHHHHh-CCCCEEEEEecCHHH------------------HHc-CCEEEEEECCEEEEE
Confidence 4444443 348999999997754 333 899999987765443
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=4.1e-11 Score=132.49 Aligned_cols=156 Identities=19% Similarity=0.224 Sum_probs=101.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.+..+ ..+++.+|+++|++.++.. |+.+++.+-
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~-i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~ 490 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM-VSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRED 490 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEE-EEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCCC
Confidence 7899999999999999999999999998887776 6777754322 4567789999999987754 776665432
Q ss_pred ------HHHHhcCCceEEEEe----cccccCCC--CccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 129 ------DTLIRSGSVDVVVVD----SVAALVPK--GELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 129 ------~~~~~~~~~~lvviD----sl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
..........- .++ .+...... ..+++ |++|+...||++... +..
T Consensus 491 ~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~~~~~g~~LSg--Gq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~ 567 (1284)
T 3g5u_A 491 VTMDEIEKAVKEANAYD-FIMKLPHQFDTLVGERGAQLSG--GQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA 567 (1284)
T ss_dssp CCHHHHHHHHHHTTCHH-HHHHSTTGGGCCCSSSSCSSCH--HHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcHH-HHHhccccccccccCCCCccCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence 11111111000 011 11111111 23444 899999999988764 344
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
....+ ..|+|+|+++|..+. +.. ||+++.|++++++..|
T Consensus 568 ~l~~~-~~~~t~i~itH~l~~------------------i~~-~d~i~vl~~G~i~~~g 606 (1284)
T 3g5u_A 568 ALDKA-REGRTTIVIAHRLST------------------VRN-ADVIAGFDGGVIVEQG 606 (1284)
T ss_dssp HHHHH-HTTSEEEEECSCHHH------------------HTT-CSEEEECSSSCCCCEE
T ss_pred HHHHH-cCCCEEEEEecCHHH------------------HHc-CCEEEEEECCEEEEEC
Confidence 43333 248999999997654 322 7788888777655443
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-10 Score=129.44 Aligned_cols=154 Identities=18% Similarity=0.215 Sum_probs=103.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCC-------------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQP------------- 118 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~------------- 118 (366)
|++|+.++|+|++|||||||+..+.+.+.+..|. +++|+.+..+ ..+++++++++|++.++..
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~-I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~ 1180 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFYDTLGGE-IFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPS 1180 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSE-EEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTT
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCccCCCCE-EEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCC
Confidence 7899999999999999999999999999888886 7888876544 5778899999998876532
Q ss_pred -CCHHHHHHHHHH-----HHhcCCceEEEEecccccCCC--CccCCccchhhHHHHHHHHHHH-----------------
Q 017792 119 -DCGEQALSLVDT-----LIRSGSVDVVVVDSVAALVPK--GELDGEMGDAHMAMQARLMSQA----------------- 173 (366)
Q Consensus 119 -~~~e~~l~~~~~-----~~~~~~~~lvviDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~----------------- 173 (366)
.+-+++.+.+.. .+.... +.+...... ..+++ |++|+...||++.+.
T Consensus 1181 ~~sd~ei~~Al~~a~l~~~I~~Lp------~GldT~vge~G~~LSg--GQrQriaiARAllr~~~ILiLDEaTSaLD~~t 1252 (1321)
T 4f4c_A 1181 SVTMAQVEEAARLANIHNFIAELP------EGFETRVGDRGTQLSG--GQKQRIAIARALVRNPKILLLDEATSALDTES 1252 (1321)
T ss_dssp TSCHHHHHHHHHHTTCHHHHHTST------TTTCSEETTTSCSSCH--HHHHHHHHHHHHHSCCSEEEEESCCCSTTSHH
T ss_pred CCCHHHHHHHHHHhCChHHHHcCc------CCCCCEecCCCcccCH--HHHHHHHHHHHHHhCCCEEEEeCccccCCHHH
Confidence 133344333322 121111 111222212 23444 899999999988754
Q ss_pred HHHHHHHhhh--cCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 LRKLSHSLSL--SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 L~~L~~~l~~--~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
=+.+...+++ .++|+|+|+|..+.+. .||+++.|++|+++..|+
T Consensus 1253 E~~Iq~~l~~~~~~~TvI~IAHRLsTi~-------------------~aD~I~Vld~G~IvE~Gt 1298 (1321)
T 4f4c_A 1253 EKVVQEALDRAREGRTCIVIAHRLNTVM-------------------NADCIAVVSNGTIIEKGT 1298 (1321)
T ss_dssp HHHHHHHHTTTSSSSEEEEECSSSSTTT-------------------TCSEEEEESSSSEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEeccCHHHHH-------------------hCCEEEEEECCEEEEECC
Confidence 1122222232 5899999999665321 379999999888776664
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.7e-11 Score=131.07 Aligned_cols=154 Identities=17% Similarity=0.190 Sum_probs=98.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCC------------C
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQP------------D 119 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~------------~ 119 (366)
+++|+.++|+||+|||||||+..+.+.+.+..|. +++|+.+..+ ..+++++++++|++.++.. .
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~-I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~ 519 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGK-ITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGI 519 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEE-EEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTC
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccccccCc-ccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccc
Confidence 7899999999999999999999999999888886 7788765433 4677889999998876532 2
Q ss_pred CHHHHHHHHHH-----HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------H
Q 017792 120 CGEQALSLVDT-----LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------L 174 (366)
Q Consensus 120 ~~e~~l~~~~~-----~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L 174 (366)
+-+++.+.+.. .+.... +............-+.|++|+...||++.+. +
T Consensus 520 ~~~~v~~a~~~a~l~~~i~~lp------~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i 593 (1321)
T 4f4c_A 520 TREEMVAACKMANAEKFIKTLP------NGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIV 593 (1321)
T ss_dssp CHHHHHHHHHHTTCHHHHHHST------TTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHH
T ss_pred hHHHHHHHHHHccchhHHHcCC------CCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHH
Confidence 33333333221 111100 1111122222222223788888888876543 2
Q ss_pred HHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
.+....+. .|+|+|+++|..+-+ ..||+++.|++++++..|
T Consensus 594 ~~~l~~~~-~~~T~iiiaHrls~i-------------------~~aD~Iivl~~G~ive~G 634 (1321)
T 4f4c_A 594 QQALDKAA-KGRTTIIIAHRLSTI-------------------RNADLIISCKNGQVVEVG 634 (1321)
T ss_dssp HHHHHHHH-TTSEEEEECSCTTTT-------------------TTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHh-CCCEEEEEcccHHHH-------------------HhCCEEEEeeCCeeeccC
Confidence 22222222 489999999976532 247888899888776654
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.9e-11 Score=122.69 Aligned_cols=139 Identities=12% Similarity=0.179 Sum_probs=81.6
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHH----
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV---- 128 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~---- 128 (366)
|-+++|++++|+||||||||||++.+++...+..|..+ . ...+++.+|++....+.++.+++...
T Consensus 373 G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~-------~----~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~ 441 (608)
T 3j16_B 373 GEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI-------P----KLNVSMKPQKIAPKFPGTVRQLFFKKIRGQ 441 (608)
T ss_dssp EECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC-------C----SCCEEEECSSCCCCCCSBHHHHHHHHCSST
T ss_pred CccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc-------c----CCcEEEecccccccCCccHHHHHHHHhhcc
Confidence 55788899999999999999999999998887766410 0 12345555554433333444432210
Q ss_pred -------HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh
Q 017792 129 -------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 181 (366)
Q Consensus 129 -------~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l 181 (366)
...+.... +....... ...+++ |++|+...||+++.. +.++.+.+
T Consensus 442 ~~~~~~~~~~l~~l~-----l~~~~~~~-~~~LSG--GqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l 513 (608)
T 3j16_B 442 FLNPQFQTDVVKPLR-----IDDIIDQE-VQHLSG--GELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRF 513 (608)
T ss_dssp TTSHHHHHHTHHHHT-----STTTSSSB-SSSCCH--HHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHcC-----ChhhhcCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 00000000 01111111 233444 666666666665432 44444443
Q ss_pred -hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEE
Q 017792 182 -SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228 (366)
Q Consensus 182 -~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~ 228 (366)
++.|.|||+++|.... +..+||+++.|..
T Consensus 514 ~~~~g~tviivtHdl~~------------------~~~~aDrvivl~~ 543 (608)
T 3j16_B 514 ILHNKKTAFIVEHDFIM------------------ATYLADKVIVFEG 543 (608)
T ss_dssp HHHHTCEEEEECSCHHH------------------HHHHCSEEEECEE
T ss_pred HHhCCCEEEEEeCCHHH------------------HHHhCCEEEEEeC
Confidence 3569999999998765 5667899998875
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1e-10 Score=118.27 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=30.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCe
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY 88 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~ 88 (366)
+++|++++|+||||||||||++.+++.+.+..|.
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 5799999999999999999999999988777665
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.9e-09 Score=96.61 Aligned_cols=140 Identities=14% Similarity=0.136 Sum_probs=91.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
.+|.++.++|++|+||||++++++..+...+..|+++....... ...+.++|+......+ ....+++..+.....
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~---~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEV---ESAPEILNYIMSNSF 86 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEE---SSTHHHHHHHHSTTS
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCcccccc---CCHHHHHHHHHHHhh
Confidence 46889999999999999999999999988888899886543211 1234455654444433 234566666665555
Q ss_pred cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCC
Q 017792 134 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGG 213 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG 213 (366)
...+++|+||+++.+.. .+...++.|. +.+++||++.|..+-.+. .|..+
T Consensus 87 ~~~~dvViIDEaQ~l~~------------------~~ve~l~~L~----~~gi~Vil~Gl~~df~~~-~F~~~------- 136 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDD------------------RICEVANILA----ENGFVVIISGLDKNFKGE-PFGPI------- 136 (223)
T ss_dssp CTTCCEEEECSGGGSCT------------------HHHHHHHHHH----HTTCEEEEECCSBCTTSS-BCTTH-------
T ss_pred CCCCCEEEEecCccCcH------------------HHHHHHHHHH----hCCCeEEEEeccccccCC-cCCCc-------
Confidence 56789999999987541 1112334443 349999999997754222 12222
Q ss_pred ceeeeeceEEEEEEE
Q 017792 214 NALKFYASVRLNIKR 228 (366)
Q Consensus 214 ~~l~~~ad~~i~l~~ 228 (366)
..+..+||.+..|+.
T Consensus 137 ~~Ll~lAD~V~el~~ 151 (223)
T 2b8t_A 137 AKLFTYADKITKLTA 151 (223)
T ss_dssp HHHHHHCSEEEECCE
T ss_pred HHHHHHhheEeecce
Confidence 125568888877653
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-10 Score=118.51 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=31.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCe
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY 88 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~ 88 (366)
+++|++++|+||||||||||++.+++.+.+..|.
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 5799999999999999999999999988877665
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.9e-09 Score=99.88 Aligned_cols=86 Identities=22% Similarity=0.225 Sum_probs=56.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----H---HH--HhhcccccCcceecCCCCHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----P---SL--AETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~---~~--~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+|++++|+||||||||||+..+++.+.+.+|.|.+.+.+ ... . .+ ...+++.+|+....+..++.+.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D-~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGD-TFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCC-CSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeec-CCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 689999999999999999999999999988887666544 322 1 22 2346777776544333334444433
Q ss_pred HHHHHhcCCceEEEEecccc
Q 017792 128 VDTLIRSGSVDVVVVDSVAA 147 (366)
Q Consensus 128 ~~~~~~~~~~~lvviDsl~~ 147 (366)
... ...+.+++|....
T Consensus 180 ~~~----~~~d~~llDt~G~ 195 (304)
T 1rj9_A 180 MKA----RGYDLLFVDTAGR 195 (304)
T ss_dssp HHH----HTCSEEEECCCCC
T ss_pred HHh----CCCCEEEecCCCC
Confidence 221 2356778886543
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.3e-09 Score=113.09 Aligned_cols=21 Identities=43% Similarity=0.841 Sum_probs=20.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLA 75 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~ 75 (366)
+++|++++|+||||||||||+
T Consensus 41 i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 41 IPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHh
Confidence 789999999999999999996
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.5e-09 Score=105.44 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=30.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCe
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY 88 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~ 88 (366)
.++|++++|+||||||||||++.+++.+.+..|.
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~ 55 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD 55 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 4589999999999999999999999988887665
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.6e-09 Score=97.91 Aligned_cols=87 Identities=17% Similarity=0.147 Sum_probs=55.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH-------HHH--hhcccccCcce-ecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-------SLA--ETIGVKTENLL-LAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~-------~~~--~~ig~~~~~~~-~~~~~~~e~~ 124 (366)
+++|++++|+||||||||||+..+++.+.+.+|.+.+.+ .+.+.. .++ ..+++.+|+.. ..+..++.+.
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g-~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~ 175 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA-GDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKA 175 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC-CCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe-ecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHH
Confidence 568999999999999999999999999998888865554 444432 222 34777777654 3333344455
Q ss_pred HHHHHHHHhcCCceEEEEeccc
Q 017792 125 LSLVDTLIRSGSVDVVVVDSVA 146 (366)
Q Consensus 125 l~~~~~~~~~~~~~lvviDsl~ 146 (366)
+..... ...+.+++|.+.
T Consensus 176 l~~~~~----~~~d~~lldt~g 193 (302)
T 3b9q_A 176 VKRGKE----EGYDVVLCDTSG 193 (302)
T ss_dssp HHHHHH----TTCSEEEECCCC
T ss_pred HHHHHH----cCCcchHHhcCC
Confidence 443221 123455666543
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=98.81 E-value=5.8e-09 Score=111.07 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=24.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
+++|++++|+||||||||||++.+++
T Consensus 458 I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 458 LKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 77999999999999999999999984
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.80 E-value=1e-08 Score=98.25 Aligned_cols=87 Identities=16% Similarity=0.135 Sum_probs=56.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH-------HH--HhhcccccCcce-ecCCCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-------SL--AETIGVKTENLL-LAQPDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~-------~~--~~~ig~~~~~~~-~~~~~~~e~~ 124 (366)
+++|++++|+||||||||||+..+++.+.+.+|.+.+.+ .+.+.. .+ ...+++.+|+.. ..+..++.+.
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g-~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~ 232 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA-GDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKA 232 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC-CCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec-ccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHH
Confidence 458999999999999999999999999998888865554 444432 22 234777777654 3333344454
Q ss_pred HHHHHHHHhcCCceEEEEeccc
Q 017792 125 LSLVDTLIRSGSVDVVVVDSVA 146 (366)
Q Consensus 125 l~~~~~~~~~~~~~lvviDsl~ 146 (366)
+..... ...+.+++|.+.
T Consensus 233 l~~~~~----~~~d~~lldt~G 250 (359)
T 2og2_A 233 VKRGKE----EGYDVVLCDTSG 250 (359)
T ss_dssp HHHHHH----TTCSEEEEECCC
T ss_pred HHHHHh----CCCHHHHHHhcC
Confidence 443221 134556667544
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.80 E-value=5.7e-09 Score=106.67 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=31.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeE
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYC 89 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~v 89 (366)
+++|++++|+||||||||||++.+++.+.+..|.+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 56899999999999999999999999888877763
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.78 E-value=5.1e-10 Score=110.83 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=44.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC-eEEEEeCCCCCCHHHHhhcccccCcce
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFIDAEHALDPSLAETIGVKTENLL 114 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg-~vl~id~e~~~~~~~~~~ig~~~~~~~ 114 (366)
+++|++++|+||||||||||++.+++.+.+.+| ..+++++. ..+.+++.+|++.
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~------~~~~i~~vpq~~~ 189 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD------PQQPIFTVPGCIS 189 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC------TTSCSSSCSSCCE
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC------ccCCeeeeccchh
Confidence 679999999999999999999999999988877 65677762 1355777777663
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.1e-08 Score=83.04 Aligned_cols=101 Identities=21% Similarity=0.233 Sum_probs=68.2
Q ss_pred ChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCH
Q 017792 42 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCG 121 (366)
Q Consensus 42 G~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~ 121 (366)
+...+=.+|. .+ +|+.+.|+||+|+|||||+..+++.+.+.|..++|++.......
T Consensus 23 ~n~~~~~~l~--~~-~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~--------------------- 78 (149)
T 2kjq_A 23 ENAELVYVLR--HK-HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT--------------------- 78 (149)
T ss_dssp CTHHHHHHCC--CC-CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------------
T ss_pred ccHHHHHHHH--hc-CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------------
Confidence 4444444555 34 89999999999999999999999988876666899987654322
Q ss_pred HHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcE-EEEEecC
Q 017792 122 EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTI-LIFINQV 194 (366)
Q Consensus 122 e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~t-VI~i~h~ 194 (366)
.+. .+++++++|.+..+.+ . .. ..|..+...+.+.+.+ +|+++|.
T Consensus 79 --------~~~--~~~~lLilDE~~~~~~---------~-----~~----~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 --------DAA--FEAEYLAVDQVEKLGN---------E-----EQ----ALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp --------GGG--GGCSEEEEESTTCCCS---------H-----HH----HHHHHHHHHHHHHTCCEEEEEESS
T ss_pred --------HHH--hCCCEEEEeCccccCh---------H-----HH----HHHHHHHHHHHHcCCcEEEEECCC
Confidence 011 2478999999877542 1 11 2344444444556777 8888884
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.9e-09 Score=114.84 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=33.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 93 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id 93 (366)
+++|++++|+||||||||||++.+++.+.+..|. ++++
T Consensus 696 I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~-I~~~ 733 (986)
T 2iw3_A 696 CSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGE-VYTH 733 (986)
T ss_dssp EETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEE-EEEC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEEc
Confidence 7799999999999999999999999998887776 4554
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=8e-08 Score=91.01 Aligned_cols=88 Identities=22% Similarity=0.225 Sum_probs=57.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcc--cccCcceecCCCCHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIG--VKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig--~~~~~~~~~~~~~~e~~l~~ 127 (366)
++|++++|+|||||||||++..+++.+.+.++.+.+.+.+-... ..+++++| +.++.....+..++.+.+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 57999999999999999999999999999999877766543221 13456666 44444333322334444433
Q ss_pred HHHHHhcCCceEEEEecccc
Q 017792 128 VDTLIRSGSVDVVVVDSVAA 147 (366)
Q Consensus 128 ~~~~~~~~~~~lvviDsl~~ 147 (366)
... ...+++++|....
T Consensus 207 ~~~----~~~d~vliDtaG~ 222 (328)
T 3e70_C 207 AKA----RGIDVVLIDTAGR 222 (328)
T ss_dssp HHH----HTCSEEEEEECCS
T ss_pred HHh----ccchhhHHhhccc
Confidence 221 2456777887544
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.72 E-value=7.5e-08 Score=95.37 Aligned_cols=90 Identities=17% Similarity=0.187 Sum_probs=61.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH-------HH--HhhcccccCcceecCCCCHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-------SL--AETIGVKTENLLLAQPDCGEQAL 125 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~-------~~--~~~ig~~~~~~~~~~~~~~e~~l 125 (366)
+.+|++++|+|+||||||||+..+++.+.+.+|.|.+.+.. .+.. .+ ...+++.+++.......++.+.+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D-~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l 368 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD-TFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAI 368 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCC-TTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCc-ccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHH
Confidence 56899999999999999999999999998888886665554 3331 12 34577777765433223344444
Q ss_pred HHHHHHHhcCCceEEEEecccccC
Q 017792 126 SLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 126 ~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
.... ....++++||....+.
T Consensus 369 ~~a~----~~~~DvVLIDTaGrl~ 388 (503)
T 2yhs_A 369 QAAK----ARNIDVLIADTAGRLQ 388 (503)
T ss_dssp HHHH----HTTCSEEEECCCCSCC
T ss_pred HHHH----hcCCCEEEEeCCCccc
Confidence 3332 2457888999876553
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=8.5e-08 Score=82.36 Aligned_cols=111 Identities=18% Similarity=0.173 Sum_probs=66.0
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
-.+++|+.+.|+||||+|||||+..+++.+.+. |..++|++..+.... +..... . ... .+.+..+
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~----~----~~~--~~~~~~~--- 98 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR-LKHLMD----E----GKD--TKFLKTV--- 98 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH-HHHHHH----H----TCC--SHHHHHH---
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH-HHHHhc----C----chH--HHHHHHh---
Confidence 456789999999999999999999999998744 546777664321111 111100 0 000 0222222
Q ss_pred HhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCc
Q 017792 132 IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRA 196 (366)
Q Consensus 132 ~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~ 196 (366)
.+++++++|.+..... + . ..+ ..+..+.....+.++++|+++|...
T Consensus 99 ---~~~~llilDE~~~~~~----~----~-----~~~---~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 99 ---LNSPVLVLDDLGSERL----S----D-----WQR---ELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp ---HTCSEEEEETCSSSCC----C----H-----HHH---HHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred ---cCCCEEEEeCCCCCcC----C----H-----HHH---HHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 1578999999874321 0 0 011 2344444444457899999999654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=98.65 E-value=2e-08 Score=104.12 Aligned_cols=25 Identities=40% Similarity=0.648 Sum_probs=22.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVI 79 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~ 79 (366)
|++|++++|+||||||||||++.++
T Consensus 345 I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 345 IPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 7799999999999999999986554
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.3e-09 Score=95.08 Aligned_cols=58 Identities=24% Similarity=0.242 Sum_probs=40.8
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcc
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENL 113 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~ 113 (366)
++++|++++|+||||||||||++.+++. .+..|.+...+.... ...+.+.+|+.+|+.
T Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~-~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 18 AIDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRP-AVEAGEKLGFLPGTL 75 (208)
T ss_dssp HHHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEEC-SCCTTCCCCSSCC--
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCC-chhhhcceEEecCCH
Confidence 4689999999999999999999999999 887776532111111 112345688888764
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.5e-08 Score=99.73 Aligned_cols=106 Identities=17% Similarity=0.187 Sum_probs=67.4
Q ss_pred cccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC---CCC--------HHHHhhc
Q 017792 38 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH---ALD--------PSLAETI 106 (366)
Q Consensus 38 ~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~---~~~--------~~~~~~i 106 (366)
.+.||...||.++. +++|++++|+||||||||||+..+++...+..+ ++.+.++. ..+ ..+.+.+
T Consensus 140 ~~~tg~~vld~vl~---i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G-~i~~~G~r~~ev~~~~~~~~~~~~l~r~i 215 (438)
T 2dpy_A 140 VLDTGVRAINALLT---VGRGQRMGLFAGSGVGKSVLLGMMARYTRADVI-VVGLIGERGREVKDFIENILGPDGRARSV 215 (438)
T ss_dssp BCCCSCHHHHHHSC---CBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEE-EEEEESCCHHHHHHHHHTTTHHHHHHTEE
T ss_pred ecCCCceEEeeeEE---ecCCCEEEEECCCCCCHHHHHHHHhcccCCCeE-EEEEeceecHHHHHHHHhhccccccCceE
Confidence 45678999999977 999999999999999999999999998876655 46666652 111 1244556
Q ss_pred ccccCc-ceecCCCCHHHHHHHHHHHHhc-CCceEEEEecccc
Q 017792 107 GVKTEN-LLLAQPDCGEQALSLVDTLIRS-GSVDVVVVDSVAA 147 (366)
Q Consensus 107 g~~~~~-~~~~~~~~~e~~l~~~~~~~~~-~~~~lvviDsl~~ 147 (366)
++.+|. .......++.+........... ...-+.++|++..
T Consensus 216 ~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~ 258 (438)
T 2dpy_A 216 VIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTR 258 (438)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHH
Confidence 777763 2222223444444333333322 2223455676543
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=4.5e-09 Score=90.06 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALH 77 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~ 77 (366)
+++|++++|+||||||||||++.
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 67999999999999999999994
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.53 E-value=5.6e-07 Score=82.47 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=34.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEe
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFID 93 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id 93 (366)
+++|++++|+||||||||||+..+++.+.+. .|.+++.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g 61 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 61 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC
Confidence 7899999999999999999999999999887 78765554
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.3e-07 Score=88.76 Aligned_cols=113 Identities=11% Similarity=0.070 Sum_probs=66.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
.+|.+++|+||||||||||+..+++.+.+. ++.++.+.. ..+.......++..|........+..+. +...+ .
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed--~~e~~~~~~~~~v~q~~~~~~~~~~~~~---La~aL-~ 194 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIED--PIEFVHESKKCLVNQREVHRDTLGFSEA---LRSAL-R 194 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEES--SCCSCCCCSSSEEEEEEBTTTBSCHHHH---HHHHT-T
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccC--cHHhhhhccccceeeeeeccccCCHHHH---HHHHh-h
Confidence 566799999999999999999999999887 565544432 2211111112222222211122344443 33333 3
Q ss_pred CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccc
Q 017792 135 GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKL 198 (366)
Q Consensus 135 ~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~ 198 (366)
.+++++++|.+.... ....+.++ ...|.+||+++|..+..
T Consensus 195 ~~PdvillDEp~d~e--------------------~~~~~~~~----~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 195 EDPDIILVGEMRDLE--------------------TIRLALTA----AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SCCSEEEESCCCSHH--------------------HHHHHHHH----HHTTCEEEEEESCSSHH
T ss_pred hCcCEEecCCCCCHH--------------------HHHHHHHH----HhcCCEEEEEEccChHH
Confidence 579999999986210 01111222 34699999999987653
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2.2e-07 Score=98.44 Aligned_cols=25 Identities=40% Similarity=0.648 Sum_probs=23.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVI 79 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~ 79 (366)
|++|++++|+|+||||||||++.++
T Consensus 647 I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 647 IPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EESSSEEECCBCTTSSHHHHHTTTH
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999999998864
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=9.7e-08 Score=100.60 Aligned_cols=29 Identities=28% Similarity=0.486 Sum_probs=25.4
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHH-HHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALH-VIAEA 82 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~-l~~~~ 82 (366)
-|++|++++|+|+||||||||++. +++.+
T Consensus 519 ~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 519 RFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp EEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred EEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 378999999999999999999996 66554
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.1e-07 Score=90.55 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=24.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
+.+| +++|+|+||||||||+..+...+.
T Consensus 58 ~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 58 LGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp CCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 6789 999999999999999988877664
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.6e-07 Score=99.83 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=20.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLAL 76 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~ 76 (366)
+++|++++|+|+||||||||+.
T Consensus 607 I~~Geiv~I~G~SGSGKSTLl~ 628 (916)
T 3pih_A 607 IPLGVFVCVTGVSGSGKSSLVM 628 (916)
T ss_dssp EESSSEEEEECSTTSSHHHHHH
T ss_pred EcCCcEEEEEccCCCChhhhHH
Confidence 7899999999999999999974
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=98.40 E-value=3.3e-07 Score=86.84 Aligned_cols=83 Identities=13% Similarity=0.153 Sum_probs=51.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||++.+++.+.+..|. +.++...... +.+.+.+++..+ ...+....+.. . +
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~-i~i~~~~e~~~~~~~~~i~~~~g-----gg~~~r~~la~--a-L- 237 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERI-ISIEDTEEIVFKHHKNYTQLFFG-----GNITSADCLKS--C-L- 237 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCE-EEEESSCCCCCSSCSSEEEEECB-----TTBCHHHHHHH--H-T-
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcE-EEECCeeccccccchhEEEEEeC-----CChhHHHHHHH--H-h-
Confidence 4579999999999999999999999988877665 5565543221 111122232221 22233333322 2 2
Q ss_pred cCCceEEEEecccc
Q 017792 134 SGSVDVVVVDSVAA 147 (366)
Q Consensus 134 ~~~~~lvviDsl~~ 147 (366)
..+++++++|.+..
T Consensus 238 ~~~p~ilildE~~~ 251 (330)
T 2pt7_A 238 RMRPDRIILGELRS 251 (330)
T ss_dssp TSCCSEEEECCCCS
T ss_pred hhCCCEEEEcCCCh
Confidence 24789999998765
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.4e-06 Score=80.78 Aligned_cols=124 Identities=19% Similarity=0.265 Sum_probs=72.9
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
|+++.+=++|+||||+|||+|++.++..+ +...+.+++...... .+| ..+..+..+-...+
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~sk----~vG------------ese~~vr~lF~~Ar 238 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAELVQK----YIG------------EGSRMVRELFVMAR 238 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGGSCS----STT------------HHHHHHHHHHHHHH
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHhhcc----ccc------------hHHHHHHHHHHHHH
Confidence 56555559999999999999999998887 345566654322110 011 12233333333344
Q ss_pred cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 134 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
...+.++++|.+.++.+...-.+..++. ...+.+.+.|..+-..-...++.||.+|...+.++
T Consensus 239 ~~aP~IIFiDEiDai~~~R~~~~~~~~~---~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LD 301 (405)
T 4b4t_J 239 EHAPSIIFMDEIDSIGSTRVEGSGGGDS---EVQRTMLELLNQLDGFETSKNIKIIMATNRLDILD 301 (405)
T ss_dssp HTCSEEEEEESSSCCTTSCSCSSSGGGG---HHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSC
T ss_pred HhCCceEeeecchhhccCCCCCCCCCcH---HHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCC
Confidence 5678999999999998543222221222 22344555555554333345677788877666544
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.1e-06 Score=84.74 Aligned_cols=86 Identities=15% Similarity=0.171 Sum_probs=55.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||+..+++.+.+. .|.+++++... ...+...+++.+|...-..+.... ..+...+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~--e~~~~~~~~~v~Q~~~g~~~~~~~---~~l~~~L~ 207 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI--EYVFKHKKSIVNQREVGEDTKSFA---DALRAALR 207 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSC--CSCCCCSSSEEEEEEBTTTBSCSH---HHHHHHTT
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccH--hhhhccCceEEEeeecCCCHHHHH---HHHHHHhh
Confidence 5789999999999999999999999999887 67776666422 111223455555521100111222 23333333
Q ss_pred cCCceEEEEeccc
Q 017792 134 SGSVDVVVVDSVA 146 (366)
Q Consensus 134 ~~~~~lvviDsl~ 146 (366)
.+++++++|.+.
T Consensus 208 -~~pd~illdE~~ 219 (372)
T 2ewv_A 208 -EDPDVIFVGEMR 219 (372)
T ss_dssp -SCCSEEEESCCC
T ss_pred -hCcCEEEECCCC
Confidence 368999999875
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.33 E-value=5.5e-06 Score=81.10 Aligned_cols=125 Identities=24% Similarity=0.299 Sum_probs=73.5
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
.|+++.+=++|+||||||||+|++.++..+ +...+++++...... .+| ..+..+..+-...
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l~sk----~~G------------ese~~ir~~F~~A 270 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGIVDK----YIG------------ESARIIREMFAYA 270 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGTCCS----SSS------------HHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhhccc----cch------------HHHHHHHHHHHHH
Confidence 367666669999999999999999998887 345666664322211 001 1233333333344
Q ss_pred hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 133 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
+...+.++++|.+.++.+...-.+..++. ...+.+...|..+-..-...++.||.+|...+.++
T Consensus 271 ~~~~P~IifiDEiDai~~~R~~~~~~~~~---~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LD 334 (437)
T 4b4t_L 271 KEHEPCIIFMDEVDAIGGRRFSEGTSADR---EIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLD 334 (437)
T ss_dssp HHSCSEEEEEECCCSSSCCCSSSCCSSTT---HHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSC
T ss_pred HhcCCceeeeecccccccccccCCCCcch---HHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhC
Confidence 55678999999999988543322221221 22344445554443322334677887777665544
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.33 E-value=4.7e-06 Score=81.42 Aligned_cols=124 Identities=19% Similarity=0.264 Sum_probs=73.4
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
|+++.+=++|+||||||||+|++.++..+ +...+.++....... .+| ..+..+..+-...+
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l~~~----~~G------------e~e~~ir~lF~~A~ 262 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEFVHK----YLG------------EGPRMVRDVFRLAR 262 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGTCCS----SCS------------HHHHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchhhcc----ccc------------hhHHHHHHHHHHHH
Confidence 56666669999999999999999998877 445666654322210 011 11222222222334
Q ss_pred cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 134 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
...+.++++|.+.++.+...-....++. ...|.+.+.|..+-......++.||++|...+.++
T Consensus 263 ~~aP~IifiDEiD~i~~~R~~~~~~~~~---~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD 325 (428)
T 4b4t_K 263 ENAPSIIFIDEVDSIATKRFDAQTGSDR---EVQRILIELLTQMDGFDQSTNVKVIMATNRADTLD 325 (428)
T ss_dssp HTCSEEEEEECTHHHHCSCSSSCSCCCC---HHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCC
T ss_pred HcCCCeeechhhhhhhccccCCCCCCCh---HHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcC
Confidence 4578999999999887533222211221 23355556666555444456778888877665544
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=8.2e-06 Score=79.32 Aligned_cols=125 Identities=19% Similarity=0.214 Sum_probs=74.2
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
.|+++.+=++|+||||+|||+|++.++..+. ...+.++....... .+| ..+..+..+-...
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~---~~fi~v~~s~l~sk----~vG------------esek~ir~lF~~A 271 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQTS---ATFLRIVGSELIQK----YLG------------DGPRLCRQIFKVA 271 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHHHHHT---CEEEEEESGGGCCS----SSS------------HHHHHHHHHHHHH
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHHHHhC---CCEEEEEHHHhhhc----cCc------------hHHHHHHHHHHHH
Confidence 4566656699999999999999999998873 45555654322110 011 1233333333344
Q ss_pred hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 133 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
+...+.++++|.+.++.+...-.+..++. ...+.+.+.|..+-..-...++.||.+|...+.++
T Consensus 272 r~~aP~IIfiDEiDai~~~R~~~~~~~~~---~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LD 335 (437)
T 4b4t_I 272 GENAPSIVFIDEIDAIGTKRYDSNSGGER---EIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLD 335 (437)
T ss_dssp HHTCSEEEEEEEESSSSCCCSCSSCSSCC---HHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCC
T ss_pred HhcCCcEEEEehhhhhcccCCCCCCCccH---HHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcC
Confidence 45678999999999988543333222222 22344555555544332345677888777666654
|
| >1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A | Back alignment and structure |
|---|
Probab=98.31 E-value=7.1e-08 Score=83.26 Aligned_cols=124 Identities=14% Similarity=0.193 Sum_probs=64.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccc----cCcce-ecCCCCHHHHHHHHHHHHhc
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVK----TENLL-LAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~----~~~~~-~~~~~~~e~~l~~~~~~~~~ 134 (366)
++.|+|++|||||||+.+++.. +.+++|+.+...++.++.+++.-. +.... +-.|....+.+. .. .
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~~d~e~~~rI~~h~~~R~~~w~tiE~p~~l~~~l~---~~--~ 71 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----APQVLYIATSQILDDEMAARIQHHKDGRPAHWRTAECWRHLDTLIT---AD--L 71 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC------CHHHHHHHTSCTTEEEECCSSCGGGTSC---TT--S
T ss_pred CEEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCCCCHHHHHHHHHHHhcCCCCcEEEEcHhhHHHHHH---hh--c
Confidence 4789999999999999998643 567899999877665443333211 11111 112222222211 11 1
Q ss_pred CCceEEEEecccccCCCCccCC-----ccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEec
Q 017792 135 GSVDVVVVDSVAALVPKGELDG-----EMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ 193 (366)
Q Consensus 135 ~~~~lvviDsl~~l~~~~~l~~-----~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h 193 (366)
...+.++||+++.+.. +.+.. +............+...+..+...+++...++|+++.
T Consensus 72 ~~~~~VLvDclt~wl~-n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~vlVsN 134 (180)
T 1c9k_A 72 APDDAILLECITTMVT-NLLFALGGENDPEQWDYAAMERAIDDEIQILIAACQRCPAKVVLVTN 134 (180)
T ss_dssp CTTCEEEEECHHHHHH-HHHHHC----CTTSCCHHHHHHHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred ccCCeEEEcCHHHHHH-HHHhhcccccccccccchhhHHHHHHHHHHHHHHHHccCCCEEEEEc
Confidence 1236899999988772 32211 0000000001122344566666666667777777654
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.30 E-value=9.6e-06 Score=77.50 Aligned_cols=114 Identities=14% Similarity=0.178 Sum_probs=71.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCH-H----HHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDP-S----LAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~-~----~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
.+.|+||+|+|||||+..++..+... +..++|++....... . +...++.... ....+..+++..+...+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~~l~~~l~ 121 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP----RRGLSRDEFLALLVEHLR 121 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCC----SSCCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCC----CCCCCHHHHHHHHHHHHh
Confidence 89999999999999999999988766 567889986544432 2 2333433211 122345666666555443
Q ss_pred -cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhh---cCcEEEEEecCC
Q 017792 134 -SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL---SQTILIFINQVR 195 (366)
Q Consensus 134 -~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~---~~~tVI~i~h~~ 195 (366)
.....++++|.+..+.+ .....|.++...+.. .++++|+++|..
T Consensus 122 ~~~~~~vlilDE~~~l~~------------------~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 122 ERDLYMFLVLDDAFNLAP------------------DILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HTTCCEEEEEETGGGSCH------------------HHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred hcCCeEEEEEECccccch------------------HHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 34578999999987720 011223333222223 588999998865
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.6e-07 Score=82.44 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=26.2
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
-.++|++++|+||||||||||++.+++...+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 5789999999999999999999999998764
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1.4e-07 Score=79.78 Aligned_cols=39 Identities=26% Similarity=0.226 Sum_probs=33.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
+++|++++|.||||||||||++.+++.+ +..|. +.+++.
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~-V~~~g~ 68 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGN-VKSPTY 68 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSC-CCCCTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCe-EEECCE
Confidence 6899999999999999999999999998 76676 444443
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.26 E-value=3.9e-06 Score=78.24 Aligned_cols=108 Identities=18% Similarity=0.127 Sum_probs=72.4
Q ss_pred cccCChHHHHHhhCCCCcCC-------CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH------HHHh
Q 017792 38 VVSTGSFALDIALGTGGLPK-------GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP------SLAE 104 (366)
Q Consensus 38 ~i~TG~~~LD~~L~~GGi~~-------G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~------~~~~ 104 (366)
.+..+...|...++ ++... +.++.++|++|+||||++..++..+.+.++++++++.+..... .+.+
T Consensus 72 ~~~~~~~~l~~~~~-~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~ 150 (297)
T 1j8m_F 72 FIKIVYDELSNLFG-GDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQ 150 (297)
T ss_dssp HHHHHHHHHHHHTT-CSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 46678889999998 55333 8899999999999999999999999988999999998754332 1233
Q ss_pred hcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEeccccc
Q 017792 105 TIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAAL 148 (366)
Q Consensus 105 ~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l 148 (366)
+.+++.-. ........+++..+....+....++++||....+
T Consensus 151 ~~~v~v~~--~~~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 151 QIGVPVYG--EPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRH 192 (297)
T ss_dssp HHTCCEEC--CTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSC
T ss_pred cCCeEEEe--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCc
Confidence 44432110 0112345555433333333356899999996543
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=5.5e-06 Score=81.05 Aligned_cols=125 Identities=21% Similarity=0.226 Sum_probs=70.6
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
-|+++.+=++|+||||||||+|++.++..+ +...+.+++...... .+| ..+..+..+-...
T Consensus 210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~~~----~vG------------ese~~ir~lF~~A 270 (434)
T 4b4t_M 210 MGIRAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQLVQM----YIG------------EGAKLVRDAFALA 270 (434)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCSS----CSS------------HHHHHHHHHHHHH
T ss_pred CCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhhhhc----ccc------------hHHHHHHHHHHHH
Confidence 366666669999999999999999998887 345566654321110 011 1223333333333
Q ss_pred hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 133 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
+...+.++++|.+.++.+...-.+..+.. ...+.+...|..+-..-...++.||.+|...+.++
T Consensus 271 ~~~aP~IifiDEiDal~~~R~~~~~~~~~---~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD 334 (434)
T 4b4t_M 271 KEKAPTIIFIDELDAIGTKRFDSEKSGDR---EVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLD 334 (434)
T ss_dssp HHHCSEEEEEECTHHHHCCCSSGGGGTTH---HHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCC
T ss_pred HhcCCeEEeecchhhhhhccCCCCCCCch---HHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcC
Confidence 44568999999999987533222211211 12233444444443222334677887777665544
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.24 E-value=1.5e-05 Score=74.50 Aligned_cols=88 Identities=18% Similarity=0.243 Sum_probs=56.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH-------HHHhhcccccCcceecCCCCHHHH-HHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-------SLAETIGVKTENLLLAQPDCGEQA-LSL 127 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~-------~~~~~ig~~~~~~~~~~~~~~e~~-l~~ 127 (366)
.+|+++.|+|+|||||||++..+++.+.+.+++|++++.+. +.. .+.+.+++.. +..........+ ...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~--~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT-FRAAAIEQLKIWGERVGATV--ISHSEGADPAAVAFDA 178 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT-TCHHHHHHHHHHHHHHTCEE--ECCSTTCCHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc-ccHHHHHHHHHHHHHcCCcE--EecCCccCHHHHHHHH
Confidence 46889999999999999999999999998888988888653 332 2334444322 000111122222 222
Q ss_pred HHHHHhcCCceEEEEecccc
Q 017792 128 VDTLIRSGSVDVVVVDSVAA 147 (366)
Q Consensus 128 ~~~~~~~~~~~lvviDsl~~ 147 (366)
+.... ...++++++|....
T Consensus 179 l~~a~-~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 179 VAHAL-ARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHH-HTTCSEEEEEECCC
T ss_pred HHHHH-hcCCCEEEEECCCc
Confidence 32222 34689999997653
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.23 E-value=3.7e-06 Score=72.37 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
.++|+||||||||||++.+++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999884
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=3.3e-06 Score=79.12 Aligned_cols=78 Identities=17% Similarity=0.112 Sum_probs=57.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCeEEEEeCCCCC-CHHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~--~~gg~vl~id~e~~~-~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
..+|.+++|+|+||||||||+..+++.+. +.+|.+.+++..... .....+.+|+. ++..+....++.+++..+..+
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence 36889999999999999999999999887 677877666544322 23344567776 655555566888888877665
Q ss_pred Hh
Q 017792 132 IR 133 (366)
Q Consensus 132 ~~ 133 (366)
..
T Consensus 156 ~~ 157 (308)
T 1sq5_A 156 KS 157 (308)
T ss_dssp TT
T ss_pred hC
Confidence 43
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.7e-05 Score=76.16 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=22.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+++| +++|+||||||||||+..++..+
T Consensus 21 ~~~g-~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 21 FQSG-ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 4567 89999999999999998887554
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.6e-06 Score=92.53 Aligned_cols=27 Identities=26% Similarity=0.186 Sum_probs=23.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
+++|++++|.||||||||||+++++..
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999999999998543
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=2e-06 Score=74.55 Aligned_cols=110 Identities=16% Similarity=0.157 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+|.++.++|++|+||||++++++..+...+..++++....... .....+.|.......+. ..++++..+ .
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~---~~~~~~~~~----~ 74 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIE---RPEEMRKYI----E 74 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEES---SGGGGGGGC----C
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEEC---CHHHHHHHh----c
Confidence 4789999999999999999999988887777888875432110 01112223222222111 122222211 1
Q ss_pred cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCc
Q 017792 134 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRA 196 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~ 196 (366)
...++++||.++.+.+ + +...|+.+. +.++.|+++.+..+
T Consensus 75 -~~~dvviIDE~Q~~~~---------~---------~~~~l~~l~----~~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 75 -EDTRGVFIDEVQFFNP---------S---------LFEVVKDLL----DRGIDVFCAGLDLT 114 (184)
T ss_dssp -TTEEEEEECCGGGSCT---------T---------HHHHHHHHH----HTTCEEEEEEESBC
T ss_pred -CCCCEEEEECcccCCH---------H---------HHHHHHHHH----HCCCCEEEEeeccc
Confidence 3578999999987642 0 112333343 24899999988654
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.17 E-value=7.7e-06 Score=77.81 Aligned_cols=90 Identities=24% Similarity=0.303 Sum_probs=58.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEeCCCCCCH-H----HHhhcccccCcceecCCCCHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALDP-S----LAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~---gg~vl~id~e~~~~~-~----~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
..+..+.|+||+|+|||||+..++..+... +..++|++....... . +...++.... ....+..+.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~ 118 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVP----FTGLSIAELYRR 118 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCC----SSSCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCC----CCCCCHHHHHHH
Confidence 346789999999999999999999988765 557888875432221 1 1222332111 122345666666
Q ss_pred HHHHHhcC-CceEEEEecccccC
Q 017792 128 VDTLIRSG-SVDVVVVDSVAALV 149 (366)
Q Consensus 128 ~~~~~~~~-~~~lvviDsl~~l~ 149 (366)
+...+... ...++++|.+..+.
T Consensus 119 l~~~l~~~~~~~vlilDE~~~l~ 141 (386)
T 2qby_A 119 LVKAVRDYGSQVVIVLDEIDAFV 141 (386)
T ss_dssp HHHHHHTCCSCEEEEEETHHHHH
T ss_pred HHHHHhccCCeEEEEEcChhhhh
Confidence 65555443 37899999998875
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.4e-05 Score=73.37 Aligned_cols=78 Identities=19% Similarity=0.327 Sum_probs=49.8
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
|++++.-+.|+||||+|||+|++.++..+ +..+++++....... ........+..+.....
T Consensus 47 ~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 107 (285)
T 3h4m_A 47 GIEPPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVKK----------------FIGEGASLVKDIFKLAK 107 (285)
T ss_dssp CCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGCCC----------------STTHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHHHh----------------ccchHHHHHHHHHHHHH
Confidence 46677789999999999999999997765 456666654321110 00111222333333334
Q ss_pred cCCceEEEEecccccCC
Q 017792 134 SGSVDVVVVDSVAALVP 150 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~ 150 (366)
...+.+++||.+..+.+
T Consensus 108 ~~~~~vl~iDEid~l~~ 124 (285)
T 3h4m_A 108 EKAPSIIFIDEIDAIAA 124 (285)
T ss_dssp HTCSEEEEEETTHHHHB
T ss_pred HcCCeEEEEECHHHhcc
Confidence 45678999999988864
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.8e-05 Score=77.59 Aligned_cols=124 Identities=19% Similarity=0.255 Sum_probs=71.0
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
|+++.+=++|+||||+|||+|++.++..+. ...+.++...... ..+| ..+..+..+-...+
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~---~~fi~vs~s~L~s----k~vG------------esek~ir~lF~~Ar 299 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRTD---ATFIRVIGSELVQ----KYVG------------EGARMVRELFEMAR 299 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHHT---CEEEEEEGGGGCC----CSSS------------HHHHHHHHHHHHHH
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccC---CCeEEEEhHHhhc----ccCC------------HHHHHHHHHHHHHH
Confidence 566666699999999999999999988873 4555555432111 0011 12333333333344
Q ss_pred cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 134 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
...+.++++|.+.++.+...-.+..+.. ...+.+...|..+-..-...++.||.+|...+.++
T Consensus 300 ~~aP~IIfiDEiDai~~~R~~~~~~~~~---~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LD 362 (467)
T 4b4t_H 300 TKKACIIFFDEIDAVGGARFDDGAGGDN---EVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLD 362 (467)
T ss_dssp HTCSEEEEEECCTTTSBCCSSSSCGGGG---HHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBC
T ss_pred hcCCceEeecccccccccccCcCCCccH---HHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCC
Confidence 5678999999999987433222211111 22334445555544322334667777776555544
|
| >1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22 | Back alignment and structure |
|---|
Probab=98.16 E-value=2.1e-05 Score=66.04 Aligned_cols=107 Identities=18% Similarity=0.111 Sum_probs=73.6
Q ss_pred CcccCChHHHHHhhCCCCcCCCCEEEEEc-CCCCcHHHHHHHHHHHHhh--cCCeEEEEeCCCCCCHHHHhhcccccCcc
Q 017792 37 PVVSTGSFALDIALGTGGLPKGRVVEIYG-PEASGKTTLALHVIAEAQR--QGGYCVFIDAEHALDPSLAETIGVKTENL 113 (366)
Q Consensus 37 ~~i~TG~~~LD~~L~~GGi~~G~ii~I~G-~~GsGKTTL~~~l~~~~~~--~gg~vl~id~e~~~~~~~~~~ig~~~~~~ 113 (366)
..+|.|.+.+|..+..||++.|.+++|.. .+|.|=..|+.-++..+.. .++.++||..............|++++++
T Consensus 23 ~~~p~~~~~~~~~~~~~~~~~G~l~Ell~~~~g~gel~LL~P~La~l~~~~~~r~vlwI~Pp~~l~~~~L~~~Gl~~~rl 102 (161)
T 1oft_A 23 NGAPLLDDVIDSPSSASIEEPAAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERI 102 (161)
T ss_dssp --------------------CCSEEEEEEESCHHHHHHHHHHHHHHHHTCSSSSEEEEESCCTTSCHHHHHHTTCCGGGE
T ss_pred ccCCCCcccccccCCCCCCCCcceEEEccCCCcHHHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHHHcCCCHHHE
Confidence 46799999999999438999999999985 5777766666666666654 67899999988878888888999999999
Q ss_pred eecCCCCHHHHHHHHHHHHhcCCceEEEEe
Q 017792 114 LLAQPDCGEQALSLVDTLIRSGSVDVVVVD 143 (366)
Q Consensus 114 ~~~~~~~~e~~l~~~~~~~~~~~~~lvviD 143 (366)
.+.++.+..+.++.+++.++.+....|+..
T Consensus 103 l~v~~~~~~daLwa~EqALrsG~~~aVl~W 132 (161)
T 1oft_A 103 LLLQAKDNAAALALSCEALRLGRSHTVVSW 132 (161)
T ss_dssp EEECCSSTTHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEECCChHHHHHHHHHHHhcCCccEEEEC
Confidence 999999999999999999999988887764
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.7e-06 Score=81.57 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=51.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhccccc-Cccee--cCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKT-ENLLL--AQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~-~~~~~--~~~~~~e~~l~~~~~ 130 (366)
+++|++++|+||||||||||++.+++.+.+..|. +.++...... ......+++.+ |+... +...+..+++....
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~-I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l- 249 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIPFDQRL-ITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCL- 249 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCE-EEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHT-
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceE-EEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHH-
Confidence 5689999999999999999999999988776665 5665432222 11334566665 44332 13345555554322
Q ss_pred HHhcCCceEEEEecc
Q 017792 131 LIRSGSVDVVVVDSV 145 (366)
Q Consensus 131 ~~~~~~~~lvviDsl 145 (366)
...++.++++.+
T Consensus 250 ---~~~pd~~l~~e~ 261 (361)
T 2gza_A 250 ---RMKPTRILLAEL 261 (361)
T ss_dssp ---TSCCSEEEESCC
T ss_pred ---hcCCCEEEEcCc
Confidence 235666666654
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=2.2e-06 Score=81.38 Aligned_cols=93 Identities=13% Similarity=0.053 Sum_probs=62.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCC---------
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPD--------- 119 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~--------- 119 (366)
+++|.+++|+|+||||||||+..+++.+.+.++.+.+++.+.... .....++++.+|+..++...
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G 131 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 131 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence 678999999999999999999999999988888876665432110 12345678888765544221
Q ss_pred CHHHHHHHHHHHHhcCCceEEEEeccccc
Q 017792 120 CGEQALSLVDTLIRSGSVDVVVVDSVAAL 148 (366)
Q Consensus 120 ~~e~~l~~~~~~~~~~~~~lvviDsl~~l 148 (366)
+.....+.+. .+.....+++++|.....
T Consensus 132 ~tr~~~e~~~-~~~~~~~~~iliDT~Gi~ 159 (337)
T 2qm8_A 132 VAAKTRETML-LCEAAGFDVILVETVGVG 159 (337)
T ss_dssp HHHHHHHHHH-HHHHTTCCEEEEEECSSS
T ss_pred hHHHHHHHHH-HHhcCCCCEEEEECCCCC
Confidence 1122333321 233457899999998743
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.10 E-value=4e-05 Score=74.93 Aligned_cols=102 Identities=19% Similarity=0.186 Sum_probs=64.3
Q ss_pred hHHHHHhhCCCCc-------CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH------HHHhhcccc
Q 017792 43 SFALDIALGTGGL-------PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP------SLAETIGVK 109 (366)
Q Consensus 43 ~~~LD~~L~~GGi-------~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~------~~~~~ig~~ 109 (366)
..+|-.+|+ ++- +++.++.++|++|+||||++..++..+.+.+++|++++.+..... .+.+.+|+.
T Consensus 76 ~~eL~~~L~-~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~ 154 (433)
T 3kl4_A 76 YDELSKLFG-GDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQ 154 (433)
T ss_dssp HHHHHHHHC-SSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHhcC-ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCc
Confidence 345666676 432 247899999999999999999999999998999999887643221 123334432
Q ss_pred cCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccc
Q 017792 110 TENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAA 147 (366)
Q Consensus 110 ~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~ 147 (366)
.-. .........+............+++++||....
T Consensus 155 ~~~--~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 155 VYG--EPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGR 190 (433)
T ss_dssp EEC--CTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCC
T ss_pred eee--ccccCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 110 111223334433333333445789999997754
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=2.2e-06 Score=81.77 Aligned_cols=55 Identities=22% Similarity=0.139 Sum_probs=45.8
Q ss_pred CcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 37 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 37 ~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
..+.||+..||.++. +.+|++++|+|+||||||||++++++...+..+. +.+.++
T Consensus 53 ~~~~tg~~ald~ll~---i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~-i~~~G~ 107 (347)
T 2obl_A 53 QPFILGVRAIDGLLT---CGIGQRIGIFAGSGVGKSTLLGMICNGASADIIV-LALIGE 107 (347)
T ss_dssp SEECCSCHHHHHHSC---EETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEE-EEEESC
T ss_pred eecCCCCEEEEeeee---ecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEE-EEEecc
Confidence 356789999999977 9999999999999999999999999988765553 444444
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=98.09 E-value=8.2e-06 Score=71.06 Aligned_cols=134 Identities=19% Similarity=0.205 Sum_probs=78.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---CHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
.+|.++.++|+.||||||.++.++..+...+.+|+++...... ......++|+......+... +++++.+.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~---~~i~~~~~--- 79 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNS---REILKYFE--- 79 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSS---THHHHHCC---
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCH---HHHHHHHh---
Confidence 4688999999999999999999999998888888887532111 11223344543222222222 23333221
Q ss_pred hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccC
Q 017792 133 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCG 212 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~g 212 (366)
...++|+||..+.+.+ + ....++.+. ..+++||++....+--+. .|.++
T Consensus 80 --~~~dvViIDEaqfl~~---------~---------~v~~l~~l~----~~~~~Vi~~Gl~~df~~~-~F~~~------ 128 (191)
T 1xx6_A 80 --EDTEVIAIDEVQFFDD---------E---------IVEIVNKIA----ESGRRVICAGLDMDFRGK-PFGPI------ 128 (191)
T ss_dssp --TTCSEEEECSGGGSCT---------H---------HHHHHHHHH----HTTCEEEEEECSBCTTSC-BCTTH------
T ss_pred --ccCCEEEEECCCCCCH---------H---------HHHHHHHHH----hCCCEEEEEecccccccC-cCccH------
Confidence 2479999999887542 0 112344443 349999999876543111 12222
Q ss_pred CceeeeeceEEEEEE
Q 017792 213 GNALKFYASVRLNIK 227 (366)
Q Consensus 213 G~~l~~~ad~~i~l~ 227 (366)
..+..+||.+..|+
T Consensus 129 -~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 129 -PELMAIAEFVDKIQ 142 (191)
T ss_dssp -HHHHHHCSEEEECC
T ss_pred -HHHHHHcccEEeee
Confidence 12455777765554
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.07 E-value=2.6e-05 Score=73.80 Aligned_cols=117 Identities=17% Similarity=0.246 Sum_probs=56.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH-hhcCCeEEEEeCCCCCC-HHHHhhcccccCcceec-CCC-----CHHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAEA-QRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLA-QPD-----CGEQALSLVDTLI 132 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~-~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~-~~~-----~~e~~l~~~~~~~ 132 (366)
+.|+||||+||||+++.+++.+ .+..+. +++++..... ......+++.++...+. ... ......+.+..+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 117 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYR-LKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVA 117 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------------------CCEECSSEEEECCC----CCHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCe-EEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHH
Confidence 8999999999999999999955 444444 4555432211 11234455554433221 111 1111222232221
Q ss_pred h-------------cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcc
Q 017792 133 R-------------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 133 ~-------------~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
. ..+++++++|.+..+.+ + .. ..|.++.... ..++++|+++|....
T Consensus 118 ~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~---------~-----~~----~~L~~~le~~-~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 118 QMEQVDFQDSKDGLAHRYKCVIINEANSLTK---------D-----AQ----AALRRTMEKY-SKNIRLIMVCDSMSP 176 (354)
T ss_dssp TTTC------------CCEEEEEECTTSSCH---------H-----HH----HHHHHHHHHS-TTTEEEEEEESCSCS
T ss_pred HhccccccccccccCCCCeEEEEeCccccCH---------H-----HH----HHHHHHHHhh-cCCCEEEEEeCCHHH
Confidence 1 23578999999887431 0 11 2233333332 247899999997654
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1.8e-05 Score=74.49 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=37.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
.+|+++.|+|++|+||||++..++..+.+.+++|++++.+.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 57899999999999999999999999998899999988764
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=98.03 E-value=4.2e-05 Score=82.46 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
|++++|.||||+|||||++++ +.+.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHH
Confidence 899999999999999999999 6654
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=1.4e-05 Score=83.73 Aligned_cols=115 Identities=21% Similarity=0.176 Sum_probs=61.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEeCCCCCCHHHHhhcccccCcce---e----cCCCCH--HHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHALDPSLAETIGVKTENLL---L----AQPDCG--EQALSL 127 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~-~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~---~----~~~~~~--e~~l~~ 127 (366)
|++++|.||||||||||++++++... ++.|..+ .. ....+++..+-+. + ....+. .+.+..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v--pa-------~~~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~~l 646 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV--PA-------EEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEV 646 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB--SS-------SEEEECCCSEEEEECCC------CCSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee--eh-------hccceeeHHHhhccCCHHHHHHhcccHHHHHHHHH
Confidence 89999999999999999999998764 4444321 11 0123444432110 0 011111 222333
Q ss_pred HHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcc
Q 017792 128 VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 128 ~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
...+....++.++++|.+..-.. .++ + ...+..+...| .+.++++|+++|..+.
T Consensus 647 a~il~~a~~p~LlLLDEpgrGTs--~lD---~----~~~~~~i~~~L-------~~~g~~vl~~TH~~~l 700 (765)
T 1ewq_A 647 ALILKEATENSLVLLDEVGRGTS--SLD---G----VAIATAVAEAL-------HERRAYTLFATHYFEL 700 (765)
T ss_dssp HHHHHHCCTTEEEEEESTTTTSC--HHH---H----HHHHHHHHHHH-------HHHTCEEEEECCCHHH
T ss_pred HHHHHhccCCCEEEEECCCCCCC--CcC---H----HHHHHHHHHHH-------HhCCCEEEEEeCCHHH
Confidence 22222245789999999843321 111 0 01122222222 2259999999997654
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.02 E-value=4e-05 Score=72.93 Aligned_cols=90 Identities=20% Similarity=0.285 Sum_probs=60.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCeEEEEeCCCCCCH-----HHHhhcccccCcceecCCCCHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDP-----SLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~------gg~vl~id~e~~~~~-----~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
..+..+.|+||+|+|||||+..++..+... +..++|++....... .+...++... -....+..++
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~ 117 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRV----PFTGLSVGEV 117 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCC----CSSCCCHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCC----CCCCCCHHHH
Confidence 345679999999999999999999888654 567888887654442 2334444321 1123345666
Q ss_pred HHHHHHHHhc-CCceEEEEecccccC
Q 017792 125 LSLVDTLIRS-GSVDVVVVDSVAALV 149 (366)
Q Consensus 125 l~~~~~~~~~-~~~~lvviDsl~~l~ 149 (366)
+..+...+.. ....+++||.+..+.
T Consensus 118 ~~~l~~~l~~~~~~~vlilDEi~~l~ 143 (387)
T 2v1u_A 118 YERLVKRLSRLRGIYIIVLDEIDFLP 143 (387)
T ss_dssp HHHHHHHHTTSCSEEEEEEETTTHHH
T ss_pred HHHHHHHHhccCCeEEEEEccHhhhc
Confidence 6665555433 346799999998775
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=98.01 E-value=6.9e-06 Score=87.41 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=25.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+++|++++|.||||||||||+++++...
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHH
Confidence 5789999999999999999999987654
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=1.1e-05 Score=71.18 Aligned_cols=134 Identities=15% Similarity=0.175 Sum_probs=76.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---CHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
.+|.+..++|+-||||||.++..+..+...+.+|+++...... ......++|+......+... +++++.+
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~---~~~~~~~---- 98 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSAS---KDIFKHI---- 98 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSG---GGGGGGC----
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCH---HHHHHHH----
Confidence 4688999999999999999999999998888888888643221 12345555654433332211 2222211
Q ss_pred hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccC
Q 017792 133 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCG 212 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~g 212 (366)
. ...++|+||..+.+.+ + ....+..+. ..++.||+.....+--+. -|.++
T Consensus 99 ~-~~~dvViIDEaQF~~~---------~---------~V~~l~~l~----~~~~~Vi~~Gl~~DF~~~-~F~~~------ 148 (214)
T 2j9r_A 99 T-EEMDVIAIDEVQFFDG---------D---------IVEVVQVLA----NRGYRVIVAGLDQDFRGL-PFGQV------ 148 (214)
T ss_dssp C-SSCCEEEECCGGGSCT---------T---------HHHHHHHHH----HTTCEEEEEECSBCTTSC-BCTTH------
T ss_pred h-cCCCEEEEECcccCCH---------H---------HHHHHHHHh----hCCCEEEEEecccccccC-ccccH------
Confidence 1 2579999999998642 0 113344443 359999999887654222 13222
Q ss_pred CceeeeeceEEEEEE
Q 017792 213 GNALKFYASVRLNIK 227 (366)
Q Consensus 213 G~~l~~~ad~~i~l~ 227 (366)
..+-.+||.+..|+
T Consensus 149 -~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 149 -PQLMAIAEHVTKLQ 162 (214)
T ss_dssp -HHHHHHCSEEEECC
T ss_pred -HHHHHhcccEEeee
Confidence 12445677776554
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.99 E-value=3.6e-06 Score=72.48 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=31.2
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
++++|+++.|+|+||||||||++.+++. + +...++++++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~-~~g~i~i~~d 43 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--P-GVPKVHFHSD 43 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--S-SSCEEEECTT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--c-CCCeEEEccc
Confidence 4789999999999999999999999875 2 3335777754
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.99 E-value=2.4e-05 Score=73.65 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
+.+| +++|+|+||||||||+..+...
T Consensus 22 ~~~g-~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 22 FSDR-VTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp CCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred cCCC-cEEEECCCCCcHHHHHHHHHHH
Confidence 3466 9999999999999999988754
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.97 E-value=1.5e-05 Score=70.64 Aligned_cols=49 Identities=27% Similarity=0.311 Sum_probs=38.8
Q ss_pred HHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 44 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 44 ~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
..|...+. ++ .+..+.|+||+|+|||||+..++..+...+..++|++..
T Consensus 41 ~~l~~~~~-~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 41 GALKSAAS-GD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp HHHHHHHH-TC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred HHHHHHHh-CC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 34445444 22 677899999999999999999999988777788888764
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.96 E-value=8e-05 Score=67.28 Aligned_cols=75 Identities=21% Similarity=0.315 Sum_probs=46.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
+++| +.|+||||+|||||++.++..+ +..+++++....... . .......+-..+. ....
T Consensus 44 ~~~~--vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~~~~~~-------------~--~~~~~~~~~~~~~-~a~~ 102 (257)
T 1lv7_A 44 IPKG--VLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEM-------------F--VGVGASRVRDMFE-QAKK 102 (257)
T ss_dssp CCCE--EEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSSTTS-------------C--CCCCHHHHHHHHH-HHHT
T ss_pred CCCe--EEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHHHHHHH-------------h--hhhhHHHHHHHHH-HHHH
Confidence 4455 8899999999999999998876 345677765432210 0 0112222222222 2233
Q ss_pred CCceEEEEecccccCC
Q 017792 135 GSVDVVVVDSVAALVP 150 (366)
Q Consensus 135 ~~~~lvviDsl~~l~~ 150 (366)
..+.++++|.+..+.+
T Consensus 103 ~~~~il~iDeid~l~~ 118 (257)
T 1lv7_A 103 AAPCIIFIDEIDAVGR 118 (257)
T ss_dssp TCSEEEEETTHHHHTC
T ss_pred cCCeeehhhhhhhhcc
Confidence 4567999999987764
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=3.2e-05 Score=81.38 Aligned_cols=28 Identities=32% Similarity=0.461 Sum_probs=25.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
++|++++|.||||+|||||++++++...
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 6899999999999999999999998754
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=97.96 E-value=4.5e-05 Score=68.03 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=67.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
.|.+..++|+-||||||.++..+..+.-.+.+|+++....... .....++|+......+... +++++.+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~~---~di~~~~------ 88 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLL---RDVAQEA------ 88 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-----------CEEEEESSG---GGGHHHH------
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhcCCeeEEEecCCH---HHHHHHh------
Confidence 5899999999999999999999999988888888876432211 2344555654433333221 3333332
Q ss_pred CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcc
Q 017792 135 GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 135 ~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
...++|+||.++.+.. +..+...+...|+.||+..+..+-
T Consensus 89 ~~~dvViIDEaQF~~~-----------------------v~el~~~l~~~gi~VI~~GL~~DF 128 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD-----------------------IVEFCEAMANAGKTVIVAALDGTF 128 (234)
T ss_dssp TTCSEEEESSGGGCTT-----------------------HHHHHHHHHHTTCEEEEECCSBCT
T ss_pred ccCCEEEEEchhhhhh-----------------------HHHHHHHHHhCCCEEEEEeccccc
Confidence 4589999999988741 111222223469999999887654
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=97.96 E-value=6.2e-05 Score=74.56 Aligned_cols=122 Identities=20% Similarity=0.232 Sum_probs=64.8
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
-+|+| +.|+||||+|||||++.++..+ +...++++....... .+| .........+.. ..
T Consensus 47 ~~p~g--vLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~~~----~~g-----------~~~~~~r~lf~~-A~ 105 (476)
T 2ce7_A 47 RMPKG--ILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFVEL----FVG-----------VGAARVRDLFAQ-AK 105 (476)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTTTC----CTT-----------HHHHHHHHHHHH-HH
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHHHH----Hhc-----------ccHHHHHHHHHH-HH
Confidence 45666 8899999999999999998866 445666664322110 001 011112222222 23
Q ss_pred cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 134 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
...+.+++||.+..+.+...-....++. ...+.+.+.|..+-..-...++.||.++|..+.++
T Consensus 106 ~~~p~ILfIDEid~l~~~r~~~~~g~~~---~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 106 AHAPCIVFIDEIDAVGRHRGAGLGGGHD---EREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HTCSEEEEEETGGGTCCC---------C---HHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred hcCCCEEEEechhhhhhhcccccCcCcH---HHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 3568899999999886422110000111 11122333333332211345788999998766543
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.96 E-value=7e-05 Score=70.44 Aligned_cols=80 Identities=21% Similarity=0.324 Sum_probs=52.3
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
|+..+..-+.|+||||+|||+|++.++..+. +..+++++....... .+ ..+ +..+..+-...
T Consensus 40 ~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l~~~----~~-----------g~~-~~~~~~lf~~a 101 (322)
T 1xwi_A 40 GKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVSK----WL-----------GES-EKLVKNLFQLA 101 (322)
T ss_dssp TTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSSCCS----SC-----------CSC-HHHHHHHHHHH
T ss_pred CCCCCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHHHhh----hh-----------hHH-HHHHHHHHHHH
Confidence 5566677899999999999999999988762 345666765432211 00 111 23333333333
Q ss_pred hcCCceEEEEecccccCC
Q 017792 133 RSGSVDVVVVDSVAALVP 150 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~ 150 (366)
....+.+++||.+..+.+
T Consensus 102 ~~~~~~vl~iDEid~l~~ 119 (322)
T 1xwi_A 102 RENKPSIIFIDEIDSLCG 119 (322)
T ss_dssp HHTSSEEEEEETTTGGGC
T ss_pred HhcCCcEEEeecHHHhcc
Confidence 445688999999999874
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=4.4e-06 Score=78.44 Aligned_cols=33 Identities=27% Similarity=0.216 Sum_probs=29.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG 87 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg 87 (366)
+++|++++|+||||||||||++.+++.+.+.+|
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G 119 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence 688999999999999999999999999877543
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.92 E-value=9.7e-06 Score=77.69 Aligned_cols=106 Identities=15% Similarity=0.200 Sum_probs=68.0
Q ss_pred CcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC--CeEEEEeCCCCCC--HHHHhhcccccCc
Q 017792 37 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG--GYCVFIDAEHALD--PSLAETIGVKTEN 112 (366)
Q Consensus 37 ~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g--g~vl~id~e~~~~--~~~~~~ig~~~~~ 112 (366)
+.+.||+..+|..+. +.+|+.++|+|++|+|||||+.+++..+...+ -.|+|+--.+..+ ..+.+.+- -
T Consensus 156 ~~~~tGiraID~~~p---i~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~----~ 228 (422)
T 3ice_A 156 STEDLTARVLDLASP---IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVK----G 228 (422)
T ss_dssp CTTHHHHHHHHHHSC---CBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCS----S
T ss_pred Ccccccceeeeeeee---ecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhC----e
Confidence 578899999999998 88999999999999999999999988876542 3466653222111 12222221 1
Q ss_pred ceec-CC-CCH-------HHHHHHHHHHHhcCCceEEEEecccccC
Q 017792 113 LLLA-QP-DCG-------EQALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 113 ~~~~-~~-~~~-------e~~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
..+. .. ..+ +-.+...+.+...+.--++++|+++.+.
T Consensus 229 ~vV~atadep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~A 274 (422)
T 3ice_A 229 EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLA 274 (422)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHHH
Confidence 1111 11 111 2223344455556677788899997553
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=5e-05 Score=70.68 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=52.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCCCCCCH------HHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHALDP------SLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e~~~~~------~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
.+|++++|+|+||+||||++..++..+.+ .|.+|.+++.+..... .+++..|+.. ....+..++...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~-----~~~~~~~~l~~al 177 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPL-----EVCYTKEEFQQAK 177 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCC-----CBCSSHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCe-----EecCCHHHHHHHH
Confidence 36899999999999999999999999986 5658899887643211 1223333321 1112344443333
Q ss_pred HHHHhcCCceEEEEec
Q 017792 129 DTLIRSGSVDVVVVDS 144 (366)
Q Consensus 129 ~~~~~~~~~~lvviDs 144 (366)
..+ .+++++++|.
T Consensus 178 ~~~---~~~dlvIiDT 190 (296)
T 2px0_A 178 ELF---SEYDHVFVDT 190 (296)
T ss_dssp HHG---GGSSEEEEEC
T ss_pred HHh---cCCCEEEEeC
Confidence 322 4689999993
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.90 E-value=5.7e-06 Score=72.63 Aligned_cols=29 Identities=34% Similarity=0.476 Sum_probs=25.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
+++|++++|+||||||||||++.+++.+.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 78999999999999999999999999874
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00037 Score=68.20 Aligned_cols=90 Identities=18% Similarity=0.152 Sum_probs=58.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH------HHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP------SLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~------~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
++.++.++|++|+||||++..++..+...|.+|++++.+..... .+.+..++..-.. .......+++.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~--~~~~dp~~i~~~al~ 176 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGN--PQEKDAIKLAKEGVD 176 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECC--TTCCCHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEec--CCCCCHHHHHHHHHH
Confidence 36799999999999999999999999888889999987643332 2344444432111 112234444333333
Q ss_pred HHhcCCceEEEEeccccc
Q 017792 131 LIRSGSVDVVVVDSVAAL 148 (366)
Q Consensus 131 ~~~~~~~~lvviDsl~~l 148 (366)
......+++++||....+
T Consensus 177 ~a~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 177 YFKSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHHHTTCSEEEEECCCCS
T ss_pred HHHhCCCCEEEEECCCcc
Confidence 334456899999987544
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.88 E-value=7.1e-06 Score=72.82 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=27.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 91 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~ 91 (366)
+++|++++|+||||||||||++.+++.+ + |.+.+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~ 53 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF 53 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE
Confidence 6799999999999999999999999977 4 55433
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.88 E-value=7.7e-06 Score=76.20 Aligned_cols=122 Identities=20% Similarity=0.265 Sum_probs=65.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
|++++..+.|+||||+|||+|++.++..+ +...++++... .....+|.. ......++..+ .
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~~~----l~~~~~g~~--------~~~~~~~f~~a----~ 105 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPE----LLTMWFGES--------EANVREIFDKA----R 105 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECHHH----HHHHHHTTC--------TTHHHHHHHHH----H
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEhHH----HHhhhcCch--------HHHHHHHHHHH----H
Confidence 68889999999999999999999998876 34556655311 111112211 11122333322 2
Q ss_pred cCCceEEEEecccccCCCCccC-CccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccc
Q 017792 134 SGSVDVVVVDSVAALVPKGELD-GEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKL 198 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~~~~l~-~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~ 198 (366)
...+.++++|.+..+.+...-. ...+... .+.+.+.|..+-......++.||.+++....+
T Consensus 106 ~~~p~il~iDEid~l~~~~~~~~~~~~~~~----~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 106 QAAPCVLFFDELDSIAKARGGNIGDGGGAA----DRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HTCSEEEEECSTTHHHHHHTTTTCCSSCSC----CHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred hcCCeEEEEEChHHHhhccCCCcCCcchHH----HHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 3457899999998876321110 0001110 01222333333221123577888888766543
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.87 E-value=6e-05 Score=69.28 Aligned_cols=76 Identities=30% Similarity=0.369 Sum_probs=46.4
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
-+++| ++|+||||||||||++.+++.+.. ..+++++........ + ..+..+..+-....
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~~~~~---~~i~i~g~~l~~~~~----~------------~~~~~i~~vf~~a~ 100 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVANESGL---NFISVKGPELLNMYV----G------------ESERAVRQVFQRAK 100 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHHHTTC---EEEEEETTTTCSSTT----H------------HHHHHHHHHHHHHH
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHHHcCC---CEEEEEcHHHHhhhh----h------------HHHHHHHHHHHHHH
Confidence 35566 999999999999999999887643 457777654322100 0 01111222222222
Q ss_pred cCCceEEEEecccccCC
Q 017792 134 SGSVDVVVVDSVAALVP 150 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~ 150 (366)
...+.++++|.+..+.+
T Consensus 101 ~~~p~i~~~Deid~~~~ 117 (274)
T 2x8a_A 101 NSAPCVIFFDEVDALCP 117 (274)
T ss_dssp HTCSEEEEEETCTTTCC
T ss_pred hcCCCeEeeehhhhhhc
Confidence 34567899999987653
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.87 E-value=9.4e-05 Score=66.65 Aligned_cols=78 Identities=21% Similarity=0.185 Sum_probs=44.0
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
|++...-+.|+||||+|||+++..++..+ +...++++....... +... ....+..+-....
T Consensus 35 g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~---------------~~~~-~~~~~~~~~~~a~ 95 (262)
T 2qz4_A 35 GAKVPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVEV---------------IGGL-GAARVRSLFKEAR 95 (262)
T ss_dssp -CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSSS---------------STTH-HHHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHhh---------------ccCh-hHHHHHHHHHHHH
Confidence 44555668999999999999999998865 455677765432210 0000 1112222222222
Q ss_pred cCCceEEEEecccccCC
Q 017792 134 SGSVDVVVVDSVAALVP 150 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~ 150 (366)
.....+++||.+..+.+
T Consensus 96 ~~~~~vl~iDeid~l~~ 112 (262)
T 2qz4_A 96 ARAPCIVYIDEIDAVGK 112 (262)
T ss_dssp HTCSEEEEEECC-----
T ss_pred hcCCeEEEEeCcchhhc
Confidence 34578999999998863
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=97.87 E-value=3.6e-06 Score=86.16 Aligned_cols=69 Identities=12% Similarity=0.137 Sum_probs=42.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCCC------CCCHHHHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEH------ALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e~------~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
++|+||||||||||+..+++...+ ..|. +++++.. .....+...+|+.+|+..+....++.+.+.....
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~-vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~ 123 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGI-VTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQN 123 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCe-EEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHH
Confidence 999999999999999999998766 3554 3333322 1112455678999988777766667766665443
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.5e-06 Score=78.44 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=30.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcc
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENL 113 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~ 113 (366)
.++|+||||||||||++.+++...+..|. ++++++........+.+++.+|+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~-i~~~g~~i~~~~~~~~i~~v~q~~ 56 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKAS-SWNREEKIPKTVEIKAIGHVIEEG 56 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-------------CCCCCSCCEEEESCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCc-cccCCcccCcceeeeeeEEEeecC
Confidence 47899999999999999999999888776 455554433223345567776643
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.2e-05 Score=70.69 Aligned_cols=32 Identities=34% Similarity=0.485 Sum_probs=28.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQG 86 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g 86 (366)
.++|++++|+||||||||||++.+++.+.+.|
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g 50 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQG 50 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 46899999999999999999999999988653
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=1.3e-05 Score=76.82 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=30.1
Q ss_pred CCcCC--CCEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 017792 53 GGLPK--GRVVEIYGPEASGKTTLALHVIAEAQRQG 86 (366)
Q Consensus 53 GGi~~--G~ii~I~G~~GsGKTTL~~~l~~~~~~~g 86 (366)
--+++ |+.++|+|+||||||||++.+++.+.+..
T Consensus 163 ~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 163 KEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp TTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred HHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 34566 99999999999999999999999988766
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.3e-05 Score=69.79 Aligned_cols=52 Identities=31% Similarity=0.381 Sum_probs=37.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCc
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN 112 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~ 112 (366)
++|++++|+|+|||||||+++.++..+ | .++++++..... ......|+.+++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~----g-~~~i~~d~~~~~~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET----G-LEFAEADAFHSPENIATMQRGIPLTD 80 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH----C-CEEEEGGGGSCHHHHHHHHTTCCCCH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh----C-CeEEcccccccHHHHHHHhcCCCCCC
Confidence 579999999999999999999998876 3 367776654432 222345666654
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=5.7e-05 Score=70.25 Aligned_cols=90 Identities=23% Similarity=0.294 Sum_probs=56.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHH------HHhhcccccCcceecCCCCHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS------LAETIGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~------~~~~ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+|+++.|+|++|+||||++..+++.+.+.++++++++.+...... +.+..++.. +.........++...+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~--~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV--LEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE--EECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEE--EEcCCCCCHHHHHHHHHH
Confidence 688999999999999999999999999888999988875432211 122222211 000112334444322222
Q ss_pred HHhcCCceEEEEeccccc
Q 017792 131 LIRSGSVDVVVVDSVAAL 148 (366)
Q Consensus 131 ~~~~~~~~lvviDsl~~l 148 (366)
......++++++|....+
T Consensus 175 ~~~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 175 KARLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHHHTCCEEEEECCCCS
T ss_pred HHHhCCCCEEEEeCCCCc
Confidence 222236899999987544
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0002 Score=65.99 Aligned_cols=76 Identities=22% Similarity=0.318 Sum_probs=49.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSG 135 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~ 135 (366)
.++..+.|+||||+|||||++.++..+ +...++++....... .....+.....+.......
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~----------------~~~~~~~~~~~~~~~~~~~ 112 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTSK----------------YVGDGEKLVRALFAVARHM 112 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSSS----------------SCSCHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHhhc----------------ccchHHHHHHHHHHHHHHc
Confidence 346789999999999999999998765 445566665332110 0112333333333334445
Q ss_pred CceEEEEecccccCC
Q 017792 136 SVDVVVVDSVAALVP 150 (366)
Q Consensus 136 ~~~lvviDsl~~l~~ 150 (366)
.+.++++|.+..+.+
T Consensus 113 ~~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 113 QPSIIFIDEVDSLLS 127 (297)
T ss_dssp CSEEEEEETGGGTSB
T ss_pred CCcEEEeccHHHhcc
Confidence 788999999998874
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=1.4e-05 Score=74.60 Aligned_cols=42 Identities=33% Similarity=0.535 Sum_probs=34.4
Q ss_pred HHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEE
Q 017792 44 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCV 90 (366)
Q Consensus 44 ~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl 90 (366)
+.|+.+.- .+++|++++|+||||||||||++.+++.+ .|.++
T Consensus 114 ~vL~~vsl--~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~ 155 (305)
T 2v9p_A 114 NALKLWLK--GIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL 155 (305)
T ss_dssp HHHHHHHH--TCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE
T ss_pred hhhccceE--EecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE
Confidence 34555443 59999999999999999999999999988 56654
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=5.1e-05 Score=65.95 Aligned_cols=110 Identities=17% Similarity=0.152 Sum_probs=70.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
..|++..|+|+.||||||.+++.+.++...+.+|+|+..+-... ..+..++|...+-..+. ..++++.. .
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~---~~~d~~~~----~- 89 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPAC---LLRDVAQE----A- 89 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEES---SGGGGHHH----H-
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecC---CHHHHHHh----c-
Confidence 35899999999999999999999999988888999997652211 12333344332222221 22333332 1
Q ss_pred cCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcc
Q 017792 134 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAK 197 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~ 197 (366)
...+++.||.++.+ +. ...++..|. +.|+.||+.....+-
T Consensus 90 -~~~DvIlIDEaQFf-k~------------------~ve~~~~L~----~~gk~VI~~GL~~DF 129 (195)
T 1w4r_A 90 -LGVAVIGIDEGQFF-PD------------------IVEFCEAMA----NAGKTVIVAALDGTF 129 (195)
T ss_dssp -HTCSEEEESSGGGC-TT------------------HHHHHHHHH----HTTCEEEEEEESBCT
T ss_pred -cCCCEEEEEchhhh-HH------------------HHHHHHHHH----HCCCeEEEEeccccc
Confidence 24799999999988 41 112333333 469999999887764
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=5.4e-05 Score=70.93 Aligned_cols=40 Identities=28% Similarity=0.360 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
..+..+.|+||+|+|||||+..++..+...+..++|++..
T Consensus 35 ~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 35 SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 3456799999999999999999999887777788898753
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.81 E-value=2.7e-06 Score=73.98 Aligned_cols=52 Identities=27% Similarity=0.291 Sum_probs=36.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCc
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTEN 112 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~ 112 (366)
|++++|+||||||||||+..+++.+. ..| +.+++..... ..+.+++|+.++.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G--i~~~g~~~~~~~~~~~~ig~~~~~ 53 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG--VPVDGFYTEEVRQGGRRIGFDVVT 53 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT--CCCEEEECCEEETTSSEEEEEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC--EEEcCEecchhHhhhceEEEEEEe
Confidence 68899999999999999999999988 655 3444322211 1245567776664
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=2.3e-05 Score=68.29 Aligned_cols=40 Identities=33% Similarity=0.504 Sum_probs=33.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
++|.++.|.|+|||||||+++.++..+...|..++|++++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 6899999999999999999999999887444444577754
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.78 E-value=3.1e-05 Score=67.61 Aligned_cols=41 Identities=29% Similarity=0.267 Sum_probs=35.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
.++|.+++|.|++|||||||+..++..+.+.++.+++++.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 46789999999999999999999999988778887777543
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=97.77 E-value=4.8e-05 Score=70.55 Aligned_cols=83 Identities=16% Similarity=0.190 Sum_probs=48.4
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
.|+++...+.|+||||+|||+|+..++..+ +..+++++..... ...+|.. +....+.+..+..+.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l~----~~~~g~~--------~~~i~~~f~~a~~~~ 95 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGELE----SGNAGEP--------AKLIRQRYREAAEII 95 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHHH----CC---HH--------HHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHhh----hccCchh--------HHHHHHHHHHHHHHH
Confidence 355666679999999999999999998877 4556666632110 0001110 001123333333344
Q ss_pred hcCCceEEEEecccccCC
Q 017792 133 RSGSVDVVVVDSVAALVP 150 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~ 150 (366)
+...+.++++|.+..+.+
T Consensus 96 ~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 96 RKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp TTSSCCCEEEECCC----
T ss_pred hcCCCeEEEEechhhhcC
Confidence 566788999999988774
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00013 Score=67.44 Aligned_cols=85 Identities=19% Similarity=0.218 Sum_probs=54.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH-HHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-SLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGS 136 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~-~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~ 136 (366)
...+.|+||||+||||+++.++..+...++.+++++....... ...+.+|..++....... ..+ ...+....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~---~~~----~~~~~~~~ 119 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEG---GQL----TEAVRRRP 119 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTC---CHH----HHHHHHCS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCcccccccc---chH----HHHHHhCC
Confidence 3479999999999999999999988777777888876544332 334445554433221111 111 12222334
Q ss_pred ceEEEEecccccC
Q 017792 137 VDVVVVDSVAALV 149 (366)
Q Consensus 137 ~~lvviDsl~~l~ 149 (366)
..++++|.+..+.
T Consensus 120 ~~vl~lDEi~~l~ 132 (311)
T 4fcw_A 120 YSVILFDAIEKAH 132 (311)
T ss_dssp SEEEEEETGGGSC
T ss_pred CeEEEEeChhhcC
Confidence 5799999997764
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00011 Score=71.76 Aligned_cols=89 Identities=25% Similarity=0.329 Sum_probs=57.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHH-------HHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS-------LAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~-------~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
++.++.++|++|+||||++..++..+.+.+++|++++.+. ..+. +.+..+++. +......+..+++....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~-~r~aa~~qL~~~~~~~gv~v--~~~~~~~~p~~i~~~~l 173 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT-QRPAAREQLRLLGEKVGVPV--LEVMDGESPESIRRRVE 173 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS-SCHHHHHHHHHHHHHHTCCE--EECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc-cCchhHHHHHHhcccCCccE--EecCCCCCHHHHHHHHH
Confidence 5789999999999999999999999998889999988753 3321 222333321 00011223444433222
Q ss_pred HHHhcCCceEEEEeccccc
Q 017792 130 TLIRSGSVDVVVVDSVAAL 148 (366)
Q Consensus 130 ~~~~~~~~~lvviDsl~~l 148 (366)
........++++||....+
T Consensus 174 ~~~~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 174 EKARLEARDLILVDTAGRL 192 (425)
T ss_dssp HHHHHTTCSEEEEECCCCS
T ss_pred HHHHHCCCCEEEEcCCCcc
Confidence 2232356899999987544
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.76 E-value=1.6e-05 Score=69.07 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=25.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+++|++++|+||||||||||++.+++.+
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4579999999999999999999998875
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00012 Score=76.71 Aligned_cols=123 Identities=21% Similarity=0.336 Sum_probs=71.0
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
-|+.+-.=++|+||||+|||+|++.++..+ +...+++++.+ +. +. ..-..+..+..+-...
T Consensus 233 ~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~~~~v~~~~-----l~---sk--------~~gese~~lr~lF~~A 293 (806)
T 3cf2_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPE-----IM---SK--------LAGESESNLRKAFEEA 293 (806)
T ss_dssp CCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCEEEEEEHHH-----HH---SS--------CTTHHHHHHHHHHHHH
T ss_pred cCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCeEEEEEhHH-----hh---cc--------cchHHHHHHHHHHHHH
Confidence 466665669999999999999999998765 45566665321 10 00 0011233333333334
Q ss_pred hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccc
Q 017792 133 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLST 200 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~ 200 (366)
+...+.+++||.+.++.+..+-.. ++. ..+.+.+.|..+-......++.||.++...+.++.
T Consensus 294 ~~~~PsIIfIDEiDal~~~r~~~~--~~~----~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ 355 (806)
T 3cf2_A 294 EKNAPAIIFIDELDAIAPKREKTH--GEV----ERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (806)
T ss_dssp TTSCSEEEEEESGGGTCCTTTTCC--CTT----HHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCT
T ss_pred HHcCCeEEEEehhcccccccCCCC--ChH----HHHHHHHHHHHHhcccccCCEEEEEecCChhhcCH
Confidence 556789999999999986432221 222 12333333333333223457778888776655543
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=3.1e-05 Score=66.03 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
++|.++.|.|++||||||++..++..+.+.|-.+++++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 679999999999999999999999888665556677764
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00014 Score=68.19 Aligned_cols=79 Identities=23% Similarity=0.359 Sum_probs=50.3
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
++..+..-+.|+||||+|||+|++.++..+ +..+++++.... ....+| ..+..+..+-...
T Consensus 46 ~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~l----~~~~~g------------~~~~~~~~~f~~a 106 (322)
T 3eie_A 46 GNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDL----VSKWMG------------ESEKLVKQLFAMA 106 (322)
T ss_dssp TTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHHH----HTTTGG------------GHHHHHHHHHHHH
T ss_pred cCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHHH----hhcccc------------hHHHHHHHHHHHH
Confidence 445556679999999999999999998775 455666653210 000011 1233333333334
Q ss_pred hcCCceEEEEecccccCC
Q 017792 133 RSGSVDVVVVDSVAALVP 150 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~ 150 (366)
....+.+++||.+..+.+
T Consensus 107 ~~~~~~vl~iDEid~l~~ 124 (322)
T 3eie_A 107 RENKPSIIFIDQVDALTG 124 (322)
T ss_dssp HHTSSEEEEEECGGGGSC
T ss_pred HhcCCeEEEechhhhhhc
Confidence 455778999999999874
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=2.9e-05 Score=67.91 Aligned_cols=29 Identities=45% Similarity=0.464 Sum_probs=25.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
++|.+++|.||||||||||++.+++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~ 32 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGE 32 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57899999999999999999999988753
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00038 Score=58.71 Aligned_cols=92 Identities=13% Similarity=0.141 Sum_probs=51.5
Q ss_pred hHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-------cCCeEEEEeCCCCCCHHHHhhcccccCccee
Q 017792 43 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-------QGGYCVFIDAEHALDPSLAETIGVKTENLLL 115 (366)
Q Consensus 43 ~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-------~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~ 115 (366)
+..|-..+. . ..+..+.|+||+|+|||+|+..++..+.. .+..+++++... ......+
T Consensus 31 ~~~l~~~l~-~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~------- 95 (195)
T 1jbk_A 31 IRRTIQVLQ-R--RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA-----LVAGAKY------- 95 (195)
T ss_dssp HHHHHHHHT-S--SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH-----HHTTTCS-------
T ss_pred HHHHHHHHh-c--CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH-----HhccCCc-------
Confidence 344444454 2 33456899999999999999999988764 244555654311 0000000
Q ss_pred cCCCCHHHHHHHHHHHHhcCCceEEEEecccccCC
Q 017792 116 AQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVP 150 (366)
Q Consensus 116 ~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~ 150 (366)
.......+...+..+.......+++||.+..+.+
T Consensus 96 -~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~ 129 (195)
T 1jbk_A 96 -RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVG 129 (195)
T ss_dssp -HHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT
T ss_pred -cccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhc
Confidence 0000111122222233345577999999998863
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.68 E-value=4.7e-05 Score=65.30 Aligned_cols=47 Identities=34% Similarity=0.350 Sum_probs=36.3
Q ss_pred HHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 45 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 45 ~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
.||+-.. ..+|.++.|.|++||||||++..++..+...++.+.++++
T Consensus 3 ~~~~~~~---~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 3 ALTTYKC---IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp -----CC---CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccccccc---cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 3555444 3578999999999999999999999998888888888874
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00036 Score=68.47 Aligned_cols=106 Identities=19% Similarity=0.178 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSG 135 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~--gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~ 135 (366)
+..+.|+||+|+|||||+..++..+... +..++|++.+... ..+...+. ......+. ... ..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~-~~~~~~~~----------~~~~~~~~----~~~-~~ 193 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL-NDLVDSMK----------EGKLNEFR----EKY-RK 193 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH-HHHHHHHH----------TTCHHHHH----HHH-TT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH-HHHHHHHH----------cccHHHHH----HHh-cC
Confidence 5679999999999999999999888665 6678888754311 11111110 00111111 111 12
Q ss_pred CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCC
Q 017792 136 SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVR 195 (366)
Q Consensus 136 ~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~ 195 (366)
..++++||.+..+.... . ... .|..+...+.+.++.||+++|..
T Consensus 194 ~~~vL~IDEi~~l~~~~-------~-----~q~----~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKT-------G-----VQT----ELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TCSEEEEECGGGGSSCH-------H-----HHH----HHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCEEEEeCcccccCCh-------H-----HHH----HHHHHHHHHHHCCCeEEEEECCC
Confidence 57899999998886210 0 111 23333333345688999998853
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=2.7e-05 Score=66.75 Aligned_cols=30 Identities=13% Similarity=0.309 Sum_probs=25.5
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
|-.+|++++|+||||||||||++.++....
T Consensus 1 ~~~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 1 GSHMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 446789999999999999999999988764
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00077 Score=59.91 Aligned_cols=44 Identities=25% Similarity=0.178 Sum_probs=36.4
Q ss_pred CCCE-EEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH
Q 017792 57 KGRV-VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP 100 (366)
Q Consensus 57 ~G~i-i~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~ 100 (366)
+|++ +.+.|++|+||||++..++..+...|..|++++.+..-..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~ 48 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRA 48 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCCh
Confidence 5665 7778999999999999999999888888888887754443
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=2.3e-05 Score=68.43 Aligned_cols=29 Identities=31% Similarity=0.488 Sum_probs=23.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
+++|++++|+||||||||||++.+++.+.
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35789999999999999999999998774
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00027 Score=67.28 Aligned_cols=79 Identities=23% Similarity=0.352 Sum_probs=48.4
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
++..+..-+.|+||+|+|||+|++.++..+ +..+++++.. .+... . ... .+..+..+....
T Consensus 79 ~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~-----~l~~~--------~--~g~-~~~~~~~~f~~a 139 (355)
T 2qp9_X 79 GNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSS-----DLVSK--------W--MGE-SEKLVKQLFAMA 139 (355)
T ss_dssp SSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHH-----HHHSC--------C------CHHHHHHHHHHH
T ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHH-----HHhhh--------h--cch-HHHHHHHHHHHH
Confidence 344555568899999999999999998876 3455665432 11100 0 011 122233232333
Q ss_pred hcCCceEEEEecccccCC
Q 017792 133 RSGSVDVVVVDSVAALVP 150 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~ 150 (366)
....+.+++||.+..+.+
T Consensus 140 ~~~~~~vl~iDEid~l~~ 157 (355)
T 2qp9_X 140 RENKPSIIFIDQVDALTG 157 (355)
T ss_dssp HHTSSEEEEEECGGGGTC
T ss_pred HHcCCeEEEEechHhhcc
Confidence 345688999999998874
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=97.61 E-value=7.5e-05 Score=73.45 Aligned_cols=55 Identities=29% Similarity=0.494 Sum_probs=46.1
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEe
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFID 93 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id 93 (366)
.+.+.||+..+|.+.. +-+|+.+.|+|++|+|||||+..++...... +.-++|..
T Consensus 132 ~e~l~TGir~ID~L~p---i~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~ 187 (473)
T 1sky_E 132 VEILETGIKVVDLLAP---YIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAG 187 (473)
T ss_dssp CCEECCSCHHHHHHSC---EETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred CccccccchHHHHHhh---hccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEee
Confidence 5679999999999987 7789999999999999999999999887653 44455543
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00021 Score=64.40 Aligned_cols=36 Identities=39% Similarity=0.506 Sum_probs=28.0
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
-+++| +.|+||||+|||||++.+++.+. ...+++++
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~ 82 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASG 82 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEH
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeH
Confidence 35667 89999999999999999988764 33456653
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=5.1e-05 Score=73.98 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
.+|.+++|+||||||||||+..+++.+.+..+.++++..
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed 203 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED 203 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecc
Confidence 578899999999999999999999998877787776653
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=4.2e-05 Score=68.86 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=38.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQAL 125 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l 125 (366)
-+++|.+++|.||||||||||++.+++.+ |. ++++ ...+.+++.++.. ++...+..+++
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~-~~~~-------~~~~~i~~v~~d~-~~~~l~~~~~~ 79 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELL----GQ-NEVE-------QRQRKVVILSQDR-FYKVLTAEQKA 79 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHH----TG-GGSC-------GGGCSEEEEEGGG-GBCCCCHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHh----ch-hccc-------ccCCceEEEeCCc-CccccCHhHhh
Confidence 36789999999999999999999998876 21 1122 2344566666553 44455555543
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.55 E-value=4.7e-05 Score=66.11 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=26.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
+++|.+++|+|+|||||||++..++..+.+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 578999999999999999999999887633
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.52 E-value=2.8e-05 Score=69.25 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=19.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHH-HHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVI-AEAQ 83 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~-~~~~ 83 (366)
+++|++++|+||||||||||++.++ +.+.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC----
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 5789999999999999999999998 7753
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.51 E-value=3.1e-05 Score=67.89 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=49.9
Q ss_pred HHHHHH-HHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 8 LQQALD-QITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 8 ~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+..|+. +.++.++.+.+-..-..+.-+.++.++. +..|-..+. |+|+...+.|+||||+||||+|..++..+
T Consensus 10 ~~~~i~~~~~~~~~~~~w~~I~~~l~yq~~~~~~f-~~~l~~~~~--~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 10 MSQWIRFRCSKIDEGGDWRPIVQFLRYQQIEFITF-LGALKSFLK--GTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHTSCSCCCSHHHHHHHHHTTCCHHHH-HHHHHHHHH--TCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHcCcCHHHH-HHHHHHHHh--cCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 345555 3666667665422211111234566666 777888887 69988889999999999999999998876
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0008 Score=66.06 Aligned_cols=80 Identities=20% Similarity=0.314 Sum_probs=49.8
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
|+..+..-+.|+||||+|||+|++.++..+. +..+++++....... .+|. .......++..+.
T Consensus 162 ~~~~~~~~vLL~GppGtGKT~lA~aia~~~~--~~~~~~v~~~~l~~~----~~g~--------~~~~~~~~f~~a~--- 224 (444)
T 2zan_A 162 GKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVSK----WLGE--------SEKLVKNLFQLAR--- 224 (444)
T ss_dssp GGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--SSEEEEECCC---------------------CCCTHHHHHHHHH---
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHHHcC--CCCEEEEeHHHHHhh----hcch--------HHHHHHHHHHHHH---
Confidence 4455667899999999999999999988762 445666665432211 1111 1122344444332
Q ss_pred hcCCceEEEEecccccCC
Q 017792 133 RSGSVDVVVVDSVAALVP 150 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~ 150 (366)
...+.+++||.+..+.+
T Consensus 225 -~~~~~vl~iDEid~l~~ 241 (444)
T 2zan_A 225 -ENKPSIIFIDEIDSLCG 241 (444)
T ss_dssp -HSCSEEEEESCTTTTCC
T ss_pred -HcCCeEEEEechHhhcc
Confidence 34678999999998874
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00019 Score=70.30 Aligned_cols=51 Identities=31% Similarity=0.322 Sum_probs=41.5
Q ss_pred HHHHhhCCCC---c--CCC--CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 45 ALDIALGTGG---L--PKG--RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 45 ~LD~~L~~GG---i--~~G--~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
.|..+++ +. + .++ .++.|+|++|+||||++..++..+...|.+|++++.+.
T Consensus 80 ~l~~ll~-~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 80 ELVKLLG-EEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp HHHHHHC-CSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred HHHHHhC-CCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 4666777 54 4 223 59999999999999999999999988888999998764
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.48 E-value=8.4e-05 Score=63.81 Aligned_cols=34 Identities=24% Similarity=0.432 Sum_probs=26.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
|++++|+||||||||||++.++. +.++. ++++++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~-~~i~~d 35 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNS-AYIEGD 35 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSE-EEEEHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCe-EEEccc
Confidence 67999999999999999999975 34453 667653
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=7.7e-05 Score=63.15 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=30.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 98 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~ 98 (366)
.+|.++.|+|+|||||||++..++..+ | .++++++...
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g-~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----H-AAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----T-CEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----C-cEEEeCcccc
Confidence 468899999999999999999998765 3 3677765543
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0003 Score=59.27 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
.+..+.|+||+|+|||+|+..++..+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3556899999999999999999988755
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=6.2e-05 Score=74.56 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=33.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
+++ ++++|+||||||||||++.+++.+.+..|. +++++..
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~-I~~~g~~ 66 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTL-LNFRNTT 66 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTT-CCCCCTT
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCE-EEECCEE
Confidence 678 999999999999999999999999888777 4555443
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0012 Score=60.80 Aligned_cols=39 Identities=28% Similarity=0.344 Sum_probs=30.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC----CeEEEEeC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQG----GYCVFIDA 94 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g----g~vl~id~ 94 (366)
+++.-+.|+||||+|||++++.++..+...+ +.+++++.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 4455799999999999999999998886543 35677764
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00039 Score=63.61 Aligned_cols=35 Identities=40% Similarity=0.530 Sum_probs=27.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
+++| +.|+||||||||||++.++..+. ...++++.
T Consensus 72 ~~~g--vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~ 106 (278)
T 1iy2_A 72 IPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASG 106 (278)
T ss_dssp CCCE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEH
T ss_pred CCCe--EEEECCCcChHHHHHHHHHHHcC---CCEEEecH
Confidence 5667 89999999999999999988764 33456553
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.44 E-value=9.7e-05 Score=63.04 Aligned_cols=38 Identities=29% Similarity=0.321 Sum_probs=28.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcC--CeEEEEeCCC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQG--GYCVFIDAEH 96 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~g--g~vl~id~e~ 96 (366)
+++.|+|++|||||||+..+++.+.+.+ ...+.+++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 5799999999999999999999998873 2346666543
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00085 Score=67.15 Aligned_cols=86 Identities=22% Similarity=0.215 Sum_probs=50.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHH-hhcccccCcceecCCCCHHHHHHHHH-HHHh
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLA-ETIGVKTENLLLAQPDCGEQALSLVD-TLIR 133 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~-~~ig~~~~~~~~~~~~~~e~~l~~~~-~~~~ 133 (366)
+....+.|+||+|+||||+++.++..+ +..+++++.......... ..+.-..+...+. .++.... ....
T Consensus 75 ~~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~ 145 (516)
T 1sxj_A 75 GVFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVRSKTLLNAGVKNALDNMSVV------GYFKHNEEAQNL 145 (516)
T ss_dssp TSCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCCCHHHHHHTGGGGTTBCCST------TTTTC----CCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCcchHHHHHHHHHHHhccccHH------HHHhhhhhhhhc
Confidence 355689999999999999999998876 567788877655443221 1222111110000 0000000 1112
Q ss_pred cCCceEEEEecccccCC
Q 017792 134 SGSVDVVVVDSVAALVP 150 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~ 150 (366)
.....+++||.+..+..
T Consensus 146 ~~~~~vliIDEid~l~~ 162 (516)
T 1sxj_A 146 NGKHFVIIMDEVDGMSG 162 (516)
T ss_dssp STTSEEEEECSGGGCCT
T ss_pred cCCCeEEEEECCCccch
Confidence 34578999999998863
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00077 Score=67.02 Aligned_cols=77 Identities=23% Similarity=0.410 Sum_probs=47.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
+++..-+.|+||||+|||++++.++..+ +..+++++... +... + .. ..+..+..+-.....
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~-----l~~~-------~---~g-~~~~~~~~~f~~A~~ 295 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPE-----IMSK-------L---AG-ESESNLRKAFEEAEK 295 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHH-----HHTS-------C---TT-HHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchH-----hhhh-------h---cc-hhHHHHHHHHHHHHh
Confidence 5566679999999999999999997664 56677776421 1100 0 00 011112111222234
Q ss_pred CCceEEEEecccccCC
Q 017792 135 GSVDVVVVDSVAALVP 150 (366)
Q Consensus 135 ~~~~lvviDsl~~l~~ 150 (366)
..+.++++|.+..+.+
T Consensus 296 ~~p~iLfLDEId~l~~ 311 (489)
T 3hu3_A 296 NAPAIIFIDELDAIAP 311 (489)
T ss_dssp TCSEEEEEESHHHHCB
T ss_pred cCCcEEEecchhhhcc
Confidence 5678999999998875
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00019 Score=59.14 Aligned_cols=38 Identities=21% Similarity=0.178 Sum_probs=29.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
.+.-+.|+||+|+|||+++..+.......+...+ ++..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~ 60 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YREL 60 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEEC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECC
Confidence 3455899999999999999998876655566655 6544
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00032 Score=65.88 Aligned_cols=37 Identities=24% Similarity=0.242 Sum_probs=30.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh--cCCeEEEEeCCC
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQR--QGGYCVFIDAEH 96 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~--~gg~vl~id~e~ 96 (366)
+++|.||||||||||+..+...+.. .++.+.+++.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 9999999999999999999988863 356677776654
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.43 E-value=1.5e-05 Score=74.55 Aligned_cols=70 Identities=13% Similarity=0.061 Sum_probs=37.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE--eCCCCCC-HHHHh-hcccccCcceecC----CCCHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI--DAEHALD-PSLAE-TIGVKTENLLLAQ----PDCGEQA 124 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~i--d~e~~~~-~~~~~-~ig~~~~~~~~~~----~~~~e~~ 124 (366)
+.+|++++|+|+||+|||||++.+++...+..|.+.+. .+.+... ..+.+ ..|+.+|.+.+.. ..+++++
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~e~l 247 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEEEEL 247 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCHHHH
Confidence 56789999999999999999999998887776764331 2222211 11111 2678888765543 3466554
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00023 Score=67.81 Aligned_cols=87 Identities=17% Similarity=0.191 Sum_probs=55.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhc--------CCeEEEEeCCCCC-CH-----HHHhhc-ccccCcceecCCCCHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQ--------GGYCVFIDAEHAL-DP-----SLAETI-GVKTENLLLAQPDCGE 122 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~--------gg~vl~id~e~~~-~~-----~~~~~i-g~~~~~~~~~~~~~~e 122 (366)
+..+.|+||+|+|||||+..++..+... +..++|++..... .. .+...+ |.... ....+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~ 120 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVP----KHGINLG 120 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCC----SSSSCTH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCC----CCCCCHH
Confidence 3489999999999999999999887654 6678888754322 21 112222 22111 1222345
Q ss_pred HHHHHHHHHHhcCCceEEEEecccccC
Q 017792 123 QALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 123 ~~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
+++..+...+..... +++||.+..+.
T Consensus 121 ~~~~~l~~~l~~~~~-vlilDEi~~l~ 146 (384)
T 2qby_B 121 EYIDKIKNGTRNIRA-IIYLDEVDTLV 146 (384)
T ss_dssp HHHHHHHHHHSSSCE-EEEEETTHHHH
T ss_pred HHHHHHHHHhccCCC-EEEEECHHHhc
Confidence 666666655555444 99999998775
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0013 Score=56.77 Aligned_cols=83 Identities=14% Similarity=0.150 Sum_probs=48.1
Q ss_pred hHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC--CeEEEEeCCCCCCHHHHhhcccccCcceecCCCC
Q 017792 43 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG--GYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120 (366)
Q Consensus 43 ~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g--g~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~ 120 (366)
+..|...+. .+-+ ..+.|+||+|+|||+|+..++..+...+ ...+.++..... .
T Consensus 26 ~~~l~~~l~-~~~~--~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~---------------------~ 81 (226)
T 2chg_A 26 IQRLKGYVE-RKNI--PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER---------------------G 81 (226)
T ss_dssp HHHHHHHHH-TTCC--CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTT---------------------C
T ss_pred HHHHHHHHh-CCCC--CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccccc---------------------C
Confidence 344555554 2211 2389999999999999999998775432 234444432211 1
Q ss_pred HHHHHHHHHHHHh-----cCCceEEEEecccccC
Q 017792 121 GEQALSLVDTLIR-----SGSVDVVVVDSVAALV 149 (366)
Q Consensus 121 ~e~~l~~~~~~~~-----~~~~~lvviDsl~~l~ 149 (366)
...+...+..... .....+++||.+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~ 115 (226)
T 2chg_A 82 IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT 115 (226)
T ss_dssp HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC
T ss_pred hHHHHHHHHHHhcccCCCccCceEEEEeChhhcC
Confidence 2222222222221 2457899999988775
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0019 Score=62.09 Aligned_cols=76 Identities=25% Similarity=0.353 Sum_probs=47.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSG 135 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~ 135 (366)
.++.-++|+||+|+|||+|+..++..+ +..+++++........ +| .. +..+..+.......
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~~----~g-----------~~-~~~~~~~~~~a~~~ 206 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLTSKY----VG-----------EG-EKLVRALFAVAREL 206 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC----------------------C-HHHHHHHHHHHHHS
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhhccc----cc-----------hH-HHHHHHHHHHHHhc
Confidence 345679999999999999999996654 5667777764432210 00 01 12222222233344
Q ss_pred CceEEEEecccccCC
Q 017792 136 SVDVVVVDSVAALVP 150 (366)
Q Consensus 136 ~~~lvviDsl~~l~~ 150 (366)
...+++||.+..+..
T Consensus 207 ~~~il~iDEid~l~~ 221 (389)
T 3vfd_A 207 QPSIIFIDQVDSLLC 221 (389)
T ss_dssp SSEEEEEETGGGGC-
T ss_pred CCeEEEEECchhhcc
Confidence 678999999998864
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.40 E-value=9.5e-05 Score=64.85 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
++|++++|+||||||||||+..++..+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999987764
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.40 E-value=3.8e-05 Score=73.26 Aligned_cols=70 Identities=16% Similarity=0.103 Sum_probs=42.8
Q ss_pred CChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEeCCCCCCHHHHhhcccccCcceecC
Q 017792 41 TGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQ 117 (366)
Q Consensus 41 TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~-~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~ 117 (366)
.|+..|...+ +|++++|+|+||+|||||++.+++... +..|.+.+..+... .......+++.+++..++.
T Consensus 204 ~gl~~L~~~~------~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~-~tt~~~~i~~v~q~~~l~d 274 (358)
T 2rcn_A 204 DGLKPLEEAL------TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQ-HTTTAARLYHFPHGGDVID 274 (358)
T ss_dssp BTHHHHHHHH------TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC--------------CCCEEEECTTSCEEEE
T ss_pred cCHHHHHHhc------CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCc-cceEEEEEEEECCCCEecC
Confidence 4677776654 568999999999999999999998877 66666444322211 1223345677766655443
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00087 Score=63.76 Aligned_cols=76 Identities=18% Similarity=0.318 Sum_probs=48.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSG 135 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~ 135 (366)
.+..-+.|+||+|+|||+|++.++..+ +..+++++....... .....+..+..+.......
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~----------------~~g~~~~~~~~~~~~a~~~ 175 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSK----------------WVGEGEKMVRALFAVARCQ 175 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCS----------------STTHHHHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhcc----------------ccchHHHHHHHHHHHHHhc
Confidence 345679999999999999999997765 456677765322110 0001222233333333345
Q ss_pred CceEEEEecccccCC
Q 017792 136 SVDVVVVDSVAALVP 150 (366)
Q Consensus 136 ~~~lvviDsl~~l~~ 150 (366)
...+++||.+..+.+
T Consensus 176 ~~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 176 QPAVIFIDEIDSLLS 190 (357)
T ss_dssp CSEEEEEETHHHHTB
T ss_pred CCeEEEEeCchhhhc
Confidence 678999999998864
|
| >3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00065 Score=65.07 Aligned_cols=105 Identities=18% Similarity=0.246 Sum_probs=66.7
Q ss_pred CcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCeEEEEeCCCCCCH--HHHhhc-ccccC
Q 017792 37 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDAEHALDP--SLAETI-GVKTE 111 (366)
Q Consensus 37 ~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~--gg~vl~id~e~~~~~--~~~~~i-g~~~~ 111 (366)
+.+.||+..+|.++. +-+|+-.+|+|++|+|||+|+.+++..+... +-.|+|+---+.... .+.+.+ |
T Consensus 157 e~~~tGiraID~l~P---igrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~~G---- 229 (427)
T 3l0o_A 157 DPKIYSTRLIDLFAP---IGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTNA---- 229 (427)
T ss_dssp STTCHHHHHHHHHSC---CBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSCCS----
T ss_pred cchhccchhhhhccc---ccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHhCC----
Confidence 578999999999998 7899999999999999999999998887653 335666543221110 111111 2
Q ss_pred cceecCC--CC-H------HHHHHHHHHHHhcCCceEEEEecccccC
Q 017792 112 NLLLAQP--DC-G------EQALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 112 ~~~~~~~--~~-~------e~~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
..+... .. . .-.+...+.+...+.--++++|+++.+.
T Consensus 230 -~VV~atadep~~~r~~~a~~altiAEyfrd~G~dVLil~DslTR~A 275 (427)
T 3l0o_A 230 -IVIAAPFDMPPDKQVKVAELTLEMAKRLVEFNYDVVILLDSLTRLA 275 (427)
T ss_dssp -EEEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred -eEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecccchHHH
Confidence 112211 11 1 2223344555556667788899997553
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0023 Score=59.90 Aligned_cols=96 Identities=16% Similarity=0.066 Sum_probs=56.1
Q ss_pred HHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-------CCeEEEEeCCCCCCH-----HHHhhc-ccccCc
Q 017792 46 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-------GGYCVFIDAEHALDP-----SLAETI-GVKTEN 112 (366)
Q Consensus 46 LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-------gg~vl~id~e~~~~~-----~~~~~i-g~~~~~ 112 (366)
|-..+. +| ++..+.|+||||+|||++++.++..+... .-.++++++....++ .+++.+ |. +
T Consensus 36 L~~~i~-~~--~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~---~ 109 (318)
T 3te6_A 36 IYDSLM-SS--QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKE---N 109 (318)
T ss_dssp HHHHHH-TT--CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCC---C
T ss_pred HHHHhc-CC--CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCC---C
Confidence 334444 44 45568999999999999999999988643 125788887665442 223333 21 1
Q ss_pred ceecCCCCHHHHHHHHHHH-HhcCCceEEEEecccccC
Q 017792 113 LLLAQPDCGEQALSLVDTL-IRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 113 ~~~~~~~~~e~~l~~~~~~-~~~~~~~lvviDsl~~l~ 149 (366)
.......+.+-..+... -.....-++++|.+..+.
T Consensus 110 --~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 110 --LCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp ----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred --CCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 11122233333333332 123456789999998775
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00062 Score=65.35 Aligned_cols=89 Identities=15% Similarity=0.139 Sum_probs=56.8
Q ss_pred CCCEEEE--EcCCCCcHHHHHHHHHHHHhhc------CCeEEEEeCCCCCCH-----HHHhhcccccCcceecCCCCHHH
Q 017792 57 KGRVVEI--YGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDP-----SLAETIGVKTENLLLAQPDCGEQ 123 (366)
Q Consensus 57 ~G~ii~I--~G~~GsGKTTL~~~l~~~~~~~------gg~vl~id~e~~~~~-----~~~~~ig~~~~~~~~~~~~~~e~ 123 (366)
.+..+.| +|++|+|||||+..++..+... +..++|++....... .+...++.... ....+..+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~ 124 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQ----VRGAPALD 124 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCC----CTTCCHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCC----CCCCCHHH
Confidence 4557888 9999999999999999887653 456788886433332 22333443211 11234556
Q ss_pred HHHHHHHHHh-cCCceEEEEecccccC
Q 017792 124 ALSLVDTLIR-SGSVDVVVVDSVAALV 149 (366)
Q Consensus 124 ~l~~~~~~~~-~~~~~lvviDsl~~l~ 149 (366)
++..+...+. .....+++||.+..+.
T Consensus 125 ~~~~l~~~l~~~~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 125 ILKALVDNLYVENHYLLVILDEFQSML 151 (412)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESTHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEEeCHHHHh
Confidence 6655554443 3457799999998875
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00048 Score=60.74 Aligned_cols=135 Identities=15% Similarity=0.096 Sum_probs=77.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC---CHHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~---~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
-..|.+..|+|+-||||||.++..+..+...+..++.+...... ......++|...+-..+... .+++..+
T Consensus 25 ~~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~---~di~~~i--- 98 (219)
T 3e2i_A 25 YHSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKA---SEIMTHD--- 98 (219)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSG---GGGGGSC---
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCH---HHHHHHH---
Confidence 35689999999999999997777778887777777777543221 12345566654443333222 2222221
Q ss_pred HhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeecc
Q 017792 132 IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTC 211 (366)
Q Consensus 132 ~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~ 211 (366)
....+.|.||..+.+.+ .+...+..|. ..|++||+..=.++--+. .|.+
T Consensus 99 --~~~~dvV~IDEaQFf~~------------------~~v~~l~~la----~~gi~Vi~~GLd~DF~~~-~F~~------ 147 (219)
T 3e2i_A 99 --LTNVDVIGIDEVQFFDD------------------EIVSIVEKLS----ADGHRVIVAGLDMDFRGE-PFEP------ 147 (219)
T ss_dssp --CTTCSEEEECCGGGSCT------------------HHHHHHHHHH----HTTCEEEEEEESBCTTSC-BCTT------
T ss_pred --hcCCCEEEEechhcCCH------------------HHHHHHHHHH----HCCCEEEEeecccccccC-CCcc------
Confidence 24688999999988752 1223444444 369999988665543221 1221
Q ss_pred CCceeeeeceEEEEEE
Q 017792 212 GGNALKFYASVRLNIK 227 (366)
Q Consensus 212 gG~~l~~~ad~~i~l~ 227 (366)
...+--+||.+..|+
T Consensus 148 -~~~Ll~~Ad~v~kl~ 162 (219)
T 3e2i_A 148 -MPKLMAVSEQVTKLQ 162 (219)
T ss_dssp -HHHHHHHCSEEEEEC
T ss_pred -HHHHHHhcceEEEee
Confidence 122445677776665
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00025 Score=68.10 Aligned_cols=35 Identities=40% Similarity=0.527 Sum_probs=29.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 91 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~ 91 (366)
++++|++++|+||||||||||+..+++.. ++.+++
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~ 199 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALN 199 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence 69999999999999999999999998754 555443
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00032 Score=61.39 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=23.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
..+.|+||+|+|||||+..++..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 38999999999999999999887754
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00069 Score=67.47 Aligned_cols=37 Identities=38% Similarity=0.495 Sum_probs=29.5
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
-+|+| +.|+||||+|||||++.++..+. ...+++++.
T Consensus 62 ~ip~G--vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~ 98 (499)
T 2dhr_A 62 RIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGS 98 (499)
T ss_dssp CCCSE--EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGG
T ss_pred CCCce--EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehh
Confidence 35667 89999999999999999988763 456777754
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0013 Score=64.29 Aligned_cols=99 Identities=21% Similarity=0.184 Sum_probs=62.2
Q ss_pred hHHHHHhhCCCC---c----CCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCHH------HHhhccc
Q 017792 43 SFALDIALGTGG---L----PKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPS------LAETIGV 108 (366)
Q Consensus 43 ~~~LD~~L~~GG---i----~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~~------~~~~ig~ 108 (366)
...|-.+|+ +. + .+..++.++|++|+||||++..++..+... |.+|++++.+...... +....++
T Consensus 79 ~~~l~~~l~-~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l 157 (433)
T 2xxa_A 79 RNELVAAMG-EENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGV 157 (433)
T ss_dssp HHHHHHHHC-SSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTC
T ss_pred HHHHHHHhc-cccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCe
Confidence 345556666 32 1 124689999999999999999999999988 8899999987533311 2223332
Q ss_pred ccCcceecCC---CCHHHHHHHHHHHHhcCCceEEEEecccc
Q 017792 109 KTENLLLAQP---DCGEQALSLVDTLIRSGSVDVVVVDSVAA 147 (366)
Q Consensus 109 ~~~~~~~~~~---~~~e~~l~~~~~~~~~~~~~lvviDsl~~ 147 (366)
+ ++.. .+..+++......+.....++++||....
T Consensus 158 ~-----v~~~~~~~dp~~i~~~~l~~~~~~~~D~VIIDTpG~ 194 (433)
T 2xxa_A 158 D-----FFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGR 194 (433)
T ss_dssp E-----ECCCCSSSCHHHHHHHHHHHHHHTTCSEEEEECCCC
T ss_pred e-----EEeCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCc
Confidence 2 2221 23445433222223334689999999543
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0023 Score=55.59 Aligned_cols=93 Identities=19% Similarity=0.270 Sum_probs=61.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC-CC---HHHHhhcccccCcc---eecCCC-------CH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD---PSLAETIGVKTENL---LLAQPD-------CG 121 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~-~~---~~~~~~ig~~~~~~---~~~~~~-------~~ 121 (366)
.+| .+.|++++|.||||.+.-++..+.-.|.+|+++.+-.. .. ....+.+++.+... +..... ..
T Consensus 27 ~~g-~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 27 ERG-IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCC-CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred cCc-eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 444 67788899999999999999999989999999976543 22 24455554322111 111111 12
Q ss_pred HHHHHHHHHHHhcCCceEEEEecccccC
Q 017792 122 EQALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 122 e~~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
...+..+...+.+..++++|+|.+....
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al 133 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMV 133 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccc
Confidence 2344556666777889999999998764
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00024 Score=62.27 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=33.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEeC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDA 94 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~-~~gg~vl~id~ 94 (366)
+++|.++.|.|++||||||++..++..+. ..|..++++++
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 56889999999999999999999998887 34545778764
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00011 Score=65.48 Aligned_cols=35 Identities=26% Similarity=0.100 Sum_probs=28.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 92 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~i 92 (366)
..++|.+++|.|++|||||||+..++.. ++.+.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~ 50 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLL 50 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEE
Confidence 4578999999999999999999888765 5665544
|
| >2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ... | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0011 Score=65.20 Aligned_cols=56 Identities=29% Similarity=0.549 Sum_probs=47.6
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEe
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFID 93 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id 93 (366)
..+.+.||+..+|.++. +-+|+-++|+|++|+|||+|+..++.+.... ++-++|.-
T Consensus 133 ~~e~l~TGir~ID~l~p---igkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~ 189 (482)
T 2ck3_D 133 EQEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 189 (482)
T ss_dssp CCCEECCSCHHHHHHSC---EETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEE
T ss_pred cCcCCccceEEEecccc---cccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEE
Confidence 35689999999999998 8899999999999999999999999987543 45566653
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00087 Score=63.11 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=23.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcC
Q 017792 61 VEIYGPEASGKTTLALHVIAEAQRQG 86 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~~~~g 86 (366)
+.|+||||+||||+++.++..+...+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 89999999999999999999876543
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0018 Score=64.52 Aligned_cols=102 Identities=18% Similarity=0.091 Sum_probs=60.2
Q ss_pred HHHHHhhCCC---Cc----CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH------HHHhhccccc
Q 017792 44 FALDIALGTG---GL----PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP------SLAETIGVKT 110 (366)
Q Consensus 44 ~~LD~~L~~G---Gi----~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~------~~~~~ig~~~ 110 (366)
.+|..+++ + ++ .+..++.|+|++|+||||++..++..+...|.++++++.+..... .+..+.++..
T Consensus 81 ~eL~~ll~-~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v 159 (504)
T 2j37_W 81 KELVKLVD-PGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 (504)
T ss_dssp HHHHHHHC-CCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHhc-cccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceE
Confidence 34667777 4 34 235589999999999999999999998887888899887543221 1122223221
Q ss_pred CcceecCCCCHHHHH-HHHHHHHhcCCceEEEEecccccC
Q 017792 111 ENLLLAQPDCGEQAL-SLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 111 ~~~~~~~~~~~e~~l-~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
-. ........+++ ..+..+ .....++++||....+.
T Consensus 160 ~~--~~~~~dp~~i~~~al~~~-~~~~~DvvIIDTpG~~~ 196 (504)
T 2j37_W 160 YG--SYTEMDPVIIASEGVEKF-KNENFEIIIVDTSGRHK 196 (504)
T ss_dssp EE--CCCCSCHHHHHHHHHHHH-HHTTCCEEEEEECCCCT
T ss_pred Ec--cCCCCCHHHHHHHHHHHH-HHCCCcEEEEeCCCCcc
Confidence 00 01122233332 222222 22467899999876553
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00019 Score=62.28 Aligned_cols=28 Identities=21% Similarity=0.090 Sum_probs=24.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+++|.++.|+|++||||||++..++..+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5688999999999999999999998776
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00018 Score=72.61 Aligned_cols=41 Identities=29% Similarity=0.404 Sum_probs=35.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC-eEEEEeCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFIDAE 95 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg-~vl~id~e 95 (366)
+++|+++.|+|+||||||||++.+++.+.+.+| .+.|++++
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD 407 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence 568999999999999999999999999887765 56678764
|
| >2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00074 Score=66.65 Aligned_cols=110 Identities=19% Similarity=0.316 Sum_probs=66.2
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhc---cccc
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETI---GVKT 110 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~i---g~~~ 110 (366)
.+.+.||+..+|.++. +-+|+-.+|+|++|+|||+|++..+.+....+..|+|.---+..+ ..+.+.+ +..-
T Consensus 143 ~epl~TGiraID~l~P---igrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~ 219 (502)
T 2qe7_A 143 HEPLQTGIKAIDSMIP---IGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVICIYVAIGQKQSTVAGVVETLRQHDALD 219 (502)
T ss_dssp CSBCCCSCHHHHHSSC---CBTTCBCEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEEESCCHHHHHHHHHHHHHTTCST
T ss_pred CCccccceeecccccc---cccCCEEEEECCCCCCchHHHHHHHHHhhcCCcEEEEEECCCcchHHHHHHHHHhhCCCcc
Confidence 4578999999999998 889999999999999999997755555444444567765332222 1222111 2111
Q ss_pred CcceecC-C-C-CHHHH------HHHHHHHHhcCCceEEEEeccccc
Q 017792 111 ENLLLAQ-P-D-CGEQA------LSLVDTLIRSGSVDVVVVDSVAAL 148 (366)
Q Consensus 111 ~~~~~~~-~-~-~~e~~------l~~~~~~~~~~~~~lvviDsl~~l 148 (366)
.-+.+.. . . ...+. +...+.+...+.--++++|+++.+
T Consensus 220 ~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~ 266 (502)
T 2qe7_A 220 YTIVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQ 266 (502)
T ss_dssp TEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHH
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHH
Confidence 1112221 1 1 12222 334444555566778899998754
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00022 Score=61.04 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=26.0
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
|++++.++.|.|++||||||++..++..+
T Consensus 1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 1 GMQTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCSCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 56788999999999999999999998765
|
| >2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00071 Score=66.89 Aligned_cols=110 Identities=21% Similarity=0.352 Sum_probs=66.1
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhc---cccc
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETI---GVKT 110 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~i---g~~~ 110 (366)
.+.+.||+..+|.++. +-+|+-.+|+|++|+|||+|++..+.+....+..|+|.---+... ..+.+.+ +..-
T Consensus 156 ~epl~TGiraID~l~P---igrGQR~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~ 232 (515)
T 2r9v_A 156 DTPLQTGIKAIDSMIP---IGRGQRELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVAIGQKKSAIARIIDKLRQYGAME 232 (515)
T ss_dssp CSEECCSCHHHHHHSC---EETTCBEEEEEETTSSHHHHHHHHHHTTTTTTEEEEEEEESCCHHHHHHHHHHHHHTTGGG
T ss_pred CcchhcCccccccccc---cccCCEEEEEcCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcc
Confidence 4678999999999998 889999999999999999997655544444444567764332221 1122111 1111
Q ss_pred Ccceec-CCC-C-HHH------HHHHHHHHHhcCCceEEEEeccccc
Q 017792 111 ENLLLA-QPD-C-GEQ------ALSLVDTLIRSGSVDVVVVDSVAAL 148 (366)
Q Consensus 111 ~~~~~~-~~~-~-~e~------~l~~~~~~~~~~~~~lvviDsl~~l 148 (366)
.-+.+. ..+ + ... .+...+.+...+.--++++|+++.+
T Consensus 233 rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr~ 279 (515)
T 2r9v_A 233 YTTVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSKH 279 (515)
T ss_dssp GEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHHH
Confidence 111121 111 1 222 2334444555566778899998754
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.001 Score=60.39 Aligned_cols=38 Identities=29% Similarity=0.217 Sum_probs=28.8
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
+.++..-+.|+||+|+|||+|+..++... +...++++.
T Consensus 60 ~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~ 97 (272)
T 1d2n_A 60 DRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICS 97 (272)
T ss_dssp SSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEEC
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeC
Confidence 34555679999999999999999998864 445555543
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00018 Score=60.56 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=26.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
.|.++.|.|+|||||||++..++..+. ..|+++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~-----~~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN-----MEFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT-----CEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEec
Confidence 467899999999999999999987653 256664
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00039 Score=60.13 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=32.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
..+.|+||+|+|||||+..++..+...+..++|++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 679999999999999999999988877788888865
|
| >1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00082 Score=66.30 Aligned_cols=55 Identities=24% Similarity=0.472 Sum_probs=47.5
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEe
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFID 93 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id 93 (366)
.+.+.||+..+|.++. +-+|+-++|+|++|+|||+|+..++.+.... ++.++|..
T Consensus 146 ~e~l~TGirvID~l~p---igkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~ 201 (498)
T 1fx0_B 146 LSIFETGIKVVNLLAP---YRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG 201 (498)
T ss_dssp CCCCCCSCTTHHHHSC---CCTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE
T ss_pred ccccccceeEeeeecc---cccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE
Confidence 5689999999999998 8899999999999999999999999987543 45667754
|
| >2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ... | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0011 Score=65.62 Aligned_cols=111 Identities=18% Similarity=0.335 Sum_probs=66.0
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHH-HHHHHHhh-------cCCeEEEEeCCCCCC--HHHHhh
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLAL-HVIAEAQR-------QGGYCVFIDAEHALD--PSLAET 105 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~-~l~~~~~~-------~gg~vl~id~e~~~~--~~~~~~ 105 (366)
.+.+.||+..+|.++. +-+|+-.+|+|++|+|||+|++ +++..... .+..|+|.---+..+ ..+.+.
T Consensus 143 ~epl~TGiraID~l~P---igrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~ 219 (510)
T 2ck3_A 143 REPMQTGIKAVDSLVP---IGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKR 219 (510)
T ss_dssp CSBCCCSCHHHHHHSC---CBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHH
T ss_pred Cccccccceeeccccc---cccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHH
Confidence 4578999999999998 8899999999999999999966 44444442 344577765332222 112211
Q ss_pred c---ccccCcceec-CC-CC-HHH------HHHHHHHHHhcCCceEEEEecccccC
Q 017792 106 I---GVKTENLLLA-QP-DC-GEQ------ALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 106 i---g~~~~~~~~~-~~-~~-~e~------~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
+ +..-.-+.+. .. .+ ..+ .+...+.+...+.--++++|+++.+.
T Consensus 220 ~~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A 275 (510)
T 2ck3_A 220 LTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQA 275 (510)
T ss_dssp HHHTTCGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHH
T ss_pred HHhcCCcccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHHH
Confidence 1 1111111121 11 11 222 23344445555667788999987553
|
| >3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00091 Score=65.95 Aligned_cols=110 Identities=18% Similarity=0.348 Sum_probs=66.7
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhc---cccc
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETI---GVKT 110 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~i---g~~~ 110 (366)
.+.+.||+..+|.++. +-+|+-.+|+|++|+|||+|++..+.+....+..|+|+---+... ..+.+.+ |...
T Consensus 143 ~epl~TGikaID~l~P---igrGQR~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~ 219 (513)
T 3oaa_A 143 DQPVQTGYKAVDSMIP---IGRGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHGALA 219 (513)
T ss_dssp CCBCCCSCHHHHHHSC---CBTTCBCEEEESSSSSHHHHHHHHHHTTSSSSCEEEEEEESCCHHHHHHHHHHHHHHSCST
T ss_pred Ccccccceeeeccccc---cccCCEEEeecCCCCCcchHHHHHHHhhccCCceEEEEEecCChHHHHHHHHHHhhcCccc
Confidence 4688999999999998 889999999999999999997655554443444577764322211 1222222 2111
Q ss_pred CcceecCC--C-CHHH------HHHHHHHHHhcCCceEEEEeccccc
Q 017792 111 ENLLLAQP--D-CGEQ------ALSLVDTLIRSGSVDVVVVDSVAAL 148 (366)
Q Consensus 111 ~~~~~~~~--~-~~e~------~l~~~~~~~~~~~~~lvviDsl~~l 148 (366)
.-+.+... . ...+ .+...+.+...+.--++++|+++.+
T Consensus 220 ~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 266 (513)
T 3oaa_A 220 NTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQ 266 (513)
T ss_dssp TEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHHH
Confidence 11122211 1 1222 2333444455667778899999754
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0037 Score=58.59 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=34.9
Q ss_pred ChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh---cCCeEEEEeCC
Q 017792 42 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR---QGGYCVFIDAE 95 (366)
Q Consensus 42 G~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~---~gg~vl~id~e 95 (366)
-+..|-..+. .|-++. +.|+||||+||||+++.++..+.. ....++.++..
T Consensus 45 ~~~~l~~~l~-~~~~~~--~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 45 AVTVLKKTLK-SANLPH--MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp THHHHHHHTT-CTTCCC--EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred HHHHHHHHHh-cCCCCE--EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 3456666665 343333 899999999999999999988753 23345556543
|
| >1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00036 Score=69.00 Aligned_cols=111 Identities=18% Similarity=0.272 Sum_probs=69.2
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhc---ccc-
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETI---GVK- 109 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~i---g~~- 109 (366)
.+.+.||+..+|.++. +-+|+-.+|+|++|+|||+|++..+.+....+..|+|.---+... ..+.+.+ +..
T Consensus 144 ~epl~TGiraID~l~P---igrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~ 220 (507)
T 1fx0_A 144 YEPLQTGLIAIDAMIP---VGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTNFQERGAME 220 (507)
T ss_dssp CSBCCCSCTTTTTTSC---CBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGG
T ss_pred CCcccccceecccccc---cccCCEEEEecCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCchHHHHHHHHHHhcCccc
Confidence 4578999999999998 889999999999999999997755554444455667765332222 1222221 111
Q ss_pred --------cCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccC
Q 017792 110 --------TENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 110 --------~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
.+.+...+.....-.+...+.+...+.--++++|+++.+.
T Consensus 221 rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A 268 (507)
T 1fx0_A 221 YTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQA 268 (507)
T ss_dssp SEEEEEECTTSCGGGTTHHHHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred cceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHHH
Confidence 1111111222234445555555556677888999987553
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00015 Score=67.63 Aligned_cols=60 Identities=12% Similarity=0.093 Sum_probs=38.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE--eCCCCCC-HHH--HhhcccccCccee
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI--DAEHALD-PSL--AETIGVKTENLLL 115 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~i--d~e~~~~-~~~--~~~ig~~~~~~~~ 115 (366)
+..|++++|+||||+|||||++.++ ...+..|.+.+- .+.+... ... ...+|+.+|.+.+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~ 226 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGF 226 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCC
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCc
Confidence 3457899999999999999999999 766667764431 3333322 111 1357888877644
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00043 Score=72.63 Aligned_cols=125 Identities=20% Similarity=0.236 Sum_probs=63.9
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
.|+++..-++++||||+|||.|++.++..+. ...+.++. ...+.+.+| .+ +..+..+-...
T Consensus 506 ~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~---~~f~~v~~----~~l~s~~vG-----------es-e~~vr~lF~~A 566 (806)
T 3cf2_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKG----PELLTMWFG-----------ES-EANVREIFDKA 566 (806)
T ss_dssp SCCCCCSCCEEESSTTSSHHHHHHHHHHTTT---CEEEECCH----HHHHTTTCS-----------SC-HHHHHHHHHHH
T ss_pred cCCCCCceEEEecCCCCCchHHHHHHHHHhC---CceEEecc----chhhccccc-----------hH-HHHHHHHHHHH
Confidence 5777766689999999999999999987763 33333221 011111122 11 33333333334
Q ss_pred hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 133 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
+...+.++++|.+.++.+...-.. ++ ..+...|.+.+.|..+-..-...++.||.++...+.++
T Consensus 567 r~~~P~IifiDEiDsl~~~R~~~~--~~-~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD 630 (806)
T 3cf2_A 567 RQAAPCVLFFDELDSIAKARGGNI--GD-GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630 (806)
T ss_dssp HTTCSEEEECSCGGGCC-----------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSC
T ss_pred HHcCCceeechhhhHHhhccCCCC--CC-CchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCC
Confidence 456789999999999985332110 00 00112244555555554322234555555555444433
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00029 Score=59.95 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=24.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
+.+| +++|+||||||||||+..+...+.
T Consensus 24 ~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 24 FSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp CCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 4466 999999999999999998887664
|
| >4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00012 Score=69.22 Aligned_cols=38 Identities=39% Similarity=0.474 Sum_probs=34.4
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHH
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLAL 76 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~ 76 (366)
...+|||+++||.+||-||+|.|.++.|.|+ |||+++.
T Consensus 18 ~~~~stG~~~lD~llghgGlp~g~~~li~e~---~~t~~~~ 55 (361)
T 4a8j_A 18 QPTTSTGSADLDSILGHMGLPLGNSVLVEEQ---STTEFHS 55 (361)
T ss_dssp CEEECCSCHHHHHHTTSSSEETTCEEEEEEC---SSCCTHH
T ss_pred CeeeccCCccHHHHhccCCccCCcEEEEeCC---CCCcHHH
Confidence 4689999999999997579999999999998 8999884
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00053 Score=61.14 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=31.8
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 91 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~ 91 (366)
.+.+|.++.|.|++||||||++..++..+.. +..++.
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 4568999999999999999999999998877 666543
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00018 Score=71.92 Aligned_cols=39 Identities=23% Similarity=0.194 Sum_probs=31.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
+++|.+++|+||||||||||++.+++.+.+..+ ++.+..
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~g-iitied 295 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMFIPPDAK-VVSIED 295 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCC-EEEEES
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCC-EEEEcC
Confidence 368999999999999999999999888866555 456654
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00011 Score=68.31 Aligned_cols=62 Identities=15% Similarity=0.086 Sum_probs=37.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE--eCCCCCC-H--HHHhhcccccCcceec
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI--DAEHALD-P--SLAETIGVKTENLLLA 116 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~i--d~e~~~~-~--~~~~~ig~~~~~~~~~ 116 (366)
+..|+++.|+||||||||||++.+++...+..|.+.+- ++.+... . ...+.+|+.+|.+.+.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~ 232 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFA 232 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSST
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCC
Confidence 44679999999999999999999998888777764431 3333221 1 1123578888876543
|
| >3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0029 Score=63.08 Aligned_cols=109 Identities=19% Similarity=0.261 Sum_probs=67.9
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhc-------
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETI------- 106 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~i------- 106 (366)
.+.+.||+..+|.++. +-+|+-.+|+|++|+|||+|+.+++... ....|+|+..-+..+ ..+.+.+
T Consensus 208 ~epl~TGirvID~l~P---igkGqr~~I~g~~g~GKT~L~~~ia~~~--~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~ 282 (588)
T 3mfy_A 208 EVPLITGQRVIDTFFP---QAKGGTAAIPGPAGSGKTVTQHQLAKWS--DAQVVIYIGCGERGNEMTDVLEEFPKLKDPK 282 (588)
T ss_dssp CSEECCSCHHHHHHSC---EETTCEEEECSCCSHHHHHHHHHHHHHS--SCSEEEEEECCSSSSHHHHHHHHTTTCEETT
T ss_pred CcccccCcchhhccCC---cccCCeEEeecCCCCCHHHHHHHHHhcc--CCCEEEEEEecccHHHHHHHHHHHHHhcccc
Confidence 4678899999999998 8899999999999999999998876542 334677765433333 2333332
Q ss_pred -cc-ccCc-ceecCCC--C-HH------HHHHHHHHHHhcCCceEEEEecccccC
Q 017792 107 -GV-KTEN-LLLAQPD--C-GE------QALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 107 -g~-~~~~-~~~~~~~--~-~e------~~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
|- ..++ +.+.... . .. -.+...+.+...+.--++++||++.+.
T Consensus 283 ~g~~~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR~A 337 (588)
T 3mfy_A 283 TGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWA 337 (588)
T ss_dssp TTEEGGGGEEEEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTTCC
T ss_pred cccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchHHHH
Confidence 11 1112 1222211 1 11 123334444455666788899998664
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00037 Score=60.78 Aligned_cols=28 Identities=7% Similarity=0.299 Sum_probs=24.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
.+|++++|+||+|||||||+..++....
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3689999999999999999999887653
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00038 Score=62.50 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++.++.|+|+||||||||++.++..+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999998554
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00031 Score=61.19 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=25.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
..+|.++.|+|||||||||++..++..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 5689999999999999999999998766
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00032 Score=61.09 Aligned_cols=38 Identities=32% Similarity=0.378 Sum_probs=29.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
-+++|.+++|+|++||||||++..++..+. .+.+++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D 54 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQD 54 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCC
Confidence 467899999999999999999998876542 24566644
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0005 Score=62.43 Aligned_cols=38 Identities=11% Similarity=0.154 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
++.++.|+|+|||||||++..++..+...|..+++++.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 46789999999999999999999887655666665664
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0048 Score=56.88 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=49.2
Q ss_pred hHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCeEEEEeCCCCCCHHHHhhcccccCcceecCCCC
Q 017792 43 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 120 (366)
Q Consensus 43 ~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~--gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~ 120 (366)
+..|...+. .|-.+. +.|+||+|+||||++..++..+... ...+++++.... ..
T Consensus 30 ~~~l~~~l~-~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~---------------------~~ 85 (323)
T 1sxj_B 30 IDRLQQIAK-DGNMPH--MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD---------------------RG 85 (323)
T ss_dssp HHHHHHHHH-SCCCCC--EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC---------------------CS
T ss_pred HHHHHHHHH-cCCCCe--EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc---------------------cC
Confidence 345555665 332222 8999999999999999999887432 223555553321 11
Q ss_pred HHHHHHHHHHHHh------cCCceEEEEecccccC
Q 017792 121 GEQALSLVDTLIR------SGSVDVVVVDSVAALV 149 (366)
Q Consensus 121 ~e~~l~~~~~~~~------~~~~~lvviDsl~~l~ 149 (366)
.+++...+..+.. .....+++||.+..+.
T Consensus 86 ~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~ 120 (323)
T 1sxj_B 86 IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT 120 (323)
T ss_dssp HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC
T ss_pred hHHHHHHHHHHHhccccCCCCCceEEEEECcccCC
Confidence 2333333332220 2347899999987775
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00079 Score=57.48 Aligned_cols=39 Identities=21% Similarity=0.098 Sum_probs=29.8
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 93 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id 93 (366)
...-.++.|+|++|||||||+..++..+...+..+..+.
T Consensus 3 ~~~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~ 41 (174)
T 1np6_A 3 KTMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (174)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEe
Confidence 344568999999999999999999998876665544444
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=9.9e-05 Score=71.79 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCe
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGY 88 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~ 88 (366)
+++|+||||||||||++.+++...+..|.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~Gs 99 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGA 99 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCce
Confidence 99999999999999999999987776665
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0016 Score=60.81 Aligned_cols=97 Identities=20% Similarity=0.167 Sum_probs=56.8
Q ss_pred hHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC------C-HH----HHhhccc---
Q 017792 43 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL------D-PS----LAETIGV--- 108 (366)
Q Consensus 43 ~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~------~-~~----~~~~ig~--- 108 (366)
+..|...+. .|.++.|+|+.|+|||||+.+++... + ++|++..... . .. +.+.++-
T Consensus 21 l~~L~~~l~-----~~~~v~i~G~~G~GKT~Ll~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 90 (350)
T 2qen_A 21 SRKLEESLE-----NYPLTLLLGIRRVGKSSLLRAFLNER----P-GILIDCRELYAERGHITREELIKELQSTISPFQK 90 (350)
T ss_dssp HHHHHHHHH-----HCSEEEEECCTTSSHHHHHHHHHHHS----S-EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHh-----cCCeEEEECCCcCCHHHHHHHHHHHc----C-cEEEEeecccccccCCCHHHHHHHHHHHHHHHHh
Confidence 344555554 24799999999999999999987664 2 7888764321 1 11 1121210
Q ss_pred ---------ccCccee-cCCCCHHHHHHHHHHHHhcCCceEEEEecccccC
Q 017792 109 ---------KTENLLL-AQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 109 ---------~~~~~~~-~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
....... .......+++..+.........-+++||.+..+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~ 141 (350)
T 2qen_A 91 FQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLR 141 (350)
T ss_dssp HHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGG
T ss_pred HhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHh
Confidence 0000000 0123566777666655543236789999998875
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00063 Score=57.93 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=24.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQ 85 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~ 85 (366)
|.++.|.|++||||||++..++..+...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 30 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKE 30 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 5789999999999999999998876543
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00056 Score=56.13 Aligned_cols=33 Identities=18% Similarity=-0.045 Sum_probs=24.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
+.-+.|+|++|+|||++++.+..... ..++++.
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~----~~~~~~~ 59 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT----PWVSPAR 59 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS----CEECCSS
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC----CeEEech
Confidence 34588999999999999888765432 4455543
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00066 Score=64.25 Aligned_cols=42 Identities=17% Similarity=0.117 Sum_probs=36.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
..+|.+++|+|+||+|||||+..++..+.+.++.+..++.+.
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 457899999999999999999999999988888888777654
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0026 Score=54.73 Aligned_cols=84 Identities=18% Similarity=0.259 Sum_probs=54.1
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCce
Q 017792 60 VVEIY-GPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVD 138 (366)
Q Consensus 60 ii~I~-G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~ 138 (366)
++.|+ +..|+||||++..++..+...|.+|+++|.+.... ....++....++.+..... +.+...+..+. ...+
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~--~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~--~~yD 77 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMS--LTNWSKAGKAAFDVFTAAS-EKDVYGIRKDL--ADYD 77 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCH--HHHHHTTSCCSSEEEECCS-HHHHHTHHHHT--TTSS
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCC--HHHHHhcCCCCCcEEecCc-HHHHHHHHHhc--CCCC
Confidence 45666 56889999999999999999888999999874332 2222222233333333222 44444454442 3589
Q ss_pred EEEEeccccc
Q 017792 139 VVVVDSVAAL 148 (366)
Q Consensus 139 lvviDsl~~l 148 (366)
.++||....+
T Consensus 78 ~viiD~~~~~ 87 (206)
T 4dzz_A 78 FAIVDGAGSL 87 (206)
T ss_dssp EEEEECCSSS
T ss_pred EEEEECCCCC
Confidence 9999986544
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00075 Score=58.47 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=28.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 93 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id 93 (366)
+|.++.|.|++||||||++..++..+...+ .++...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~~ 38 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLTE 38 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEec
Confidence 467899999999999999999998876544 554443
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00043 Score=62.56 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=24.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++|.+++|.||+||||||+++.++..+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999998554
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00071 Score=57.62 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 93 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id 93 (366)
++.|.|++||||||++..++..+...+-.+.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 6899999999999999999988765555566664
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0056 Score=56.87 Aligned_cols=47 Identities=17% Similarity=0.303 Sum_probs=32.9
Q ss_pred HHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 44 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 44 ~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
..|-.++..|.++ .++.+.||+|+|||+++..++..+ +..+++++..
T Consensus 36 ~~l~~~l~~~~~~--~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~ 82 (324)
T 3u61_B 36 ETFKSITSKGKIP--HIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGS 82 (324)
T ss_dssp HHHHHHHHTTCCC--SEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETT
T ss_pred HHHHHHHHcCCCC--eEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEccc
Confidence 3444455423333 478889999999999999997766 4567777753
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00079 Score=63.97 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=33.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
+.+.+++|+|+||+|||||+..+++...+.++++..+..+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeec
Confidence 4577999999999999999999999888888876666544
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.001 Score=56.43 Aligned_cols=37 Identities=32% Similarity=0.321 Sum_probs=31.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
.++.|+|++|||||||+..++..+...+.+|..+...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 4789999999999999999999888777666666643
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00035 Score=68.04 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=24.4
Q ss_pred cCCCCE--EEEEcCCCCcHHHHHHHHHHH
Q 017792 55 LPKGRV--VEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 55 i~~G~i--i~I~G~~GsGKTTL~~~l~~~ 81 (366)
+++|++ ++|+|+||||||||++.+++.
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 779999 999999999999999999876
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0086 Score=59.63 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=29.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--CC--eEEEEeCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GG--YCVFIDAE 95 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~--gg--~vl~id~e 95 (366)
+.++.-++|+|.+||||||+++.++..+... .+ .++.+|..
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 4567889999999999999999988755432 23 44556654
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00057 Score=58.15 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+|.++.|.|++||||||++..++..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999997655
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00078 Score=59.25 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+.+++|.|++||||||++..++..+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998765
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0014 Score=56.98 Aligned_cols=37 Identities=16% Similarity=0.343 Sum_probs=29.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 92 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~i 92 (366)
.+|.++.|.|++||||||++..++..+...+-.+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 3578999999999999999999998876555555443
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00077 Score=56.88 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+.++.|.|++||||||+++.++..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999987765
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00031 Score=71.24 Aligned_cols=37 Identities=24% Similarity=0.210 Sum_probs=32.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
+.++.|.|+||+||||++..++..+...+.++++...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 5799999999999999999999988888888777654
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0063 Score=59.69 Aligned_cols=69 Identities=23% Similarity=0.216 Sum_probs=42.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCce
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVD 138 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~ 138 (366)
..+.|+||||+|||||++.++..+. ...+.++...... ..+.+.+..+..........
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~---~~f~~l~a~~~~~-------------------~~ir~~~~~a~~~~~~~~~~ 108 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN---ADVERISAVTSGV-------------------KEIREAIERARQNRNAGRRT 108 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT---CEEEEEETTTCCH-------------------HHHHHHHHHHHHHHHTTCCE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC---CCeEEEEeccCCH-------------------HHHHHHHHHHHHhhhcCCCc
Confidence 4589999999999999999987763 3334444211100 01223333333333345678
Q ss_pred EEEEecccccC
Q 017792 139 VVVVDSVAALV 149 (366)
Q Consensus 139 lvviDsl~~l~ 149 (366)
+++||.+..+.
T Consensus 109 iLfIDEI~~l~ 119 (447)
T 3pvs_A 109 ILFVDEVHRFN 119 (447)
T ss_dssp EEEEETTTCC-
T ss_pred EEEEeChhhhC
Confidence 99999998775
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0023 Score=64.71 Aligned_cols=102 Identities=18% Similarity=0.148 Sum_probs=59.0
Q ss_pred hHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHH---h-hcCCeEEEEeCCCCCCHHHH-------hhcccccC
Q 017792 43 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA---Q-RQGGYCVFIDAEHALDPSLA-------ETIGVKTE 111 (366)
Q Consensus 43 ~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~---~-~~gg~vl~id~e~~~~~~~~-------~~ig~~~~ 111 (366)
+..|...|. .+-....++.|+|+.|.|||||+.+++... . .....++|++.......... ..++.. .
T Consensus 133 l~~L~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~-~ 210 (591)
T 1z6t_A 133 VNAIQQKLS-KLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQD-E 210 (591)
T ss_dssp HHHHHHHHT-TSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSS-C
T ss_pred HHHHHHHHh-cccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhccc-c
Confidence 345666665 222346799999999999999999987543 1 12245788775443222111 122210 0
Q ss_pred cceecCCCCHHHHHHHHHHHHhcC-CceEEEEeccc
Q 017792 112 NLLLAQPDCGEQALSLVDTLIRSG-SVDVVVVDSVA 146 (366)
Q Consensus 112 ~~~~~~~~~~e~~l~~~~~~~~~~-~~~lvviDsl~ 146 (366)
...-..+.+.+.....+...+... ..-++|+|.+.
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~ 246 (591)
T 1z6t_A 211 SFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW 246 (591)
T ss_dssp CSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEEC
T ss_pred ccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCC
Confidence 011123445667776666655443 56789999884
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0054 Score=54.43 Aligned_cols=92 Identities=18% Similarity=0.109 Sum_probs=50.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cC----CeEEEEeCCCCCCHHH----Hhhccccc--------Ccceec-
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR-QG----GYCVFIDAEHALDPSL----AETIGVKT--------ENLLLA- 116 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~g----g~vl~id~e~~~~~~~----~~~ig~~~--------~~~~~~- 116 (366)
+..|+.+.+.|++||||||++..++..... .+ ..+++........... +..++... ..-...
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 152 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILP 152 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccC
Confidence 345789999999999999987766654332 22 2566665432211111 11122111 000000
Q ss_pred -C-----CCCHHHHHHHHHHHHhcCCceEEEEeccccc
Q 017792 117 -Q-----PDCGEQALSLVDTLIRSGSVDVVVVDSVAAL 148 (366)
Q Consensus 117 -~-----~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l 148 (366)
. ..|...++..+... -.+++++|+|....+
T Consensus 153 ~~~~~Ivv~Tpg~l~~~l~~~--l~~~~~lVlDEah~~ 188 (235)
T 3llm_A 153 RPHASIMFCTVGVLLRKLEAG--IRGISHVIVDEIHER 188 (235)
T ss_dssp CSSSEEEEEEHHHHHHHHHHC--CTTCCEEEECCTTSC
T ss_pred CCCCeEEEECHHHHHHHHHhh--hcCCcEEEEECCccC
Confidence 0 12556666665542 356899999998753
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00092 Score=55.85 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++.|.|++||||||++..++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999987765
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00093 Score=57.85 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=28.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD 99 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~ 99 (366)
..++.|.|++||||||++..++..+ + ..+++.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l---g--~~~i~~d~~~~ 54 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC---G--YPFIEGDALHP 54 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH---T--CCEEEGGGGCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---C--CEEEeCCcCcc
Confidence 4689999999999999999998776 2 35666654443
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0011 Score=61.19 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=27.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
.+.++.|+|+|||||||++..++..+. +..++++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEec
Confidence 467999999999999999999976542 23467775
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00096 Score=61.73 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=27.8
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ 85 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~ 85 (366)
.-.++.+++|+|++|||||||+..++..+...
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 34567899999999999999999999988764
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.73 E-value=9.6e-05 Score=66.04 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=27.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeE
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYC 89 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~v 89 (366)
++++|+||||||||||+..+++.+.+..|.+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i 58 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLL 58 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeE
Confidence 5778999999999999999999988877764
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0017 Score=55.31 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=27.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 93 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id 93 (366)
++.|.|++||||||++..++..+...|-.++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6899999999999999999888765555555444
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0058 Score=57.67 Aligned_cols=39 Identities=23% Similarity=0.228 Sum_probs=27.9
Q ss_pred HHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 44 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 44 ~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
..|...+..|.++ ..+.|+||+|+||||++..++..+..
T Consensus 26 ~~L~~~l~~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 26 TALANGLSLGRIH--HAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp HHHHHHHHHTCCC--SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCCCC--eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3455555413332 36899999999999999999887753
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0019 Score=55.99 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=29.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEE
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCV 90 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl 90 (366)
...+|.++.|.|++||||||++..++..+...+-.+.
T Consensus 6 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~ 42 (212)
T 2wwf_A 6 DKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK 42 (212)
T ss_dssp CCBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred hhhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 3457889999999999999999999887765544443
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0017 Score=60.44 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=32.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEeC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDA 94 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~-~~gg~vl~id~ 94 (366)
+.-+.|+||+|+|||+|+..++..+. ..+..++|+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 57899999999999999999999888 77888888875
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0035 Score=64.68 Aligned_cols=90 Identities=19% Similarity=0.167 Sum_probs=50.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--cCCeEEEEeCCCCCC---HHHHhhcccccCcce---------ecCCCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR--QGGYCVFIDAEHALD---PSLAETIGVKTENLL---------LAQPDC 120 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~--~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~---------~~~~~~ 120 (366)
++++..++|+|++|+|||||+..++..... ..|.+ .++....+ ..+.+.+.+..+... +.....
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V--~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG 83 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV--EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPG 83 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG--GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCC
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee--cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCC
Confidence 567899999999999999999999876543 23332 22222211 233444555444322 211111
Q ss_pred HHHHHHHHHHHHhcCCceEEEEeccc
Q 017792 121 GEQALSLVDTLIRSGSVDVVVVDSVA 146 (366)
Q Consensus 121 ~e~~l~~~~~~~~~~~~~lvviDsl~ 146 (366)
-+++...+...++..+..++++|...
T Consensus 84 ~~~f~~~~~~~l~~ad~~ilVvD~~~ 109 (665)
T 2dy1_A 84 YGDFVGEIRGALEAADAALVAVSAEA 109 (665)
T ss_dssp SGGGHHHHHHHHHHCSEEEEEEETTT
T ss_pred ccchHHHHHHHHhhcCcEEEEEcCCc
Confidence 12233334444455677888898543
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00061 Score=59.31 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 93 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id 93 (366)
+++|.|++||||||++..++..+...+..+.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLA 35 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 7899999999999999999998876655555443
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0013 Score=56.30 Aligned_cols=27 Identities=41% Similarity=0.556 Sum_probs=23.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
.++|.++.|+|++||||||++..++..
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999999988765
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00069 Score=61.16 Aligned_cols=38 Identities=29% Similarity=0.325 Sum_probs=29.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
.++.++.|+|+|||||||++..++..+. ..+++++++.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~ 67 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDS 67 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHH
Confidence 4567999999999999999999987653 3356777653
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0021 Score=61.73 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=40.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIG 107 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig 107 (366)
...+.-+.|+|++|||||||++.++..+...++.++++|...... .+.+.+|
T Consensus 32 ~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~g 83 (392)
T 4ag6_A 32 DRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREYK-EMCRKLG 83 (392)
T ss_dssp TBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCSH-HHHHHTT
T ss_pred ccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCHH-HHHHHcC
Confidence 345667899999999999999999998888888888898765433 3344443
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.005 Score=65.37 Aligned_cols=84 Identities=20% Similarity=0.238 Sum_probs=48.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHH-HHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCc
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS-LAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSV 137 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~-~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~ 137 (366)
..+.|+||+|+|||++++.++..+...+...++++........ ..+-+|..+..+-.. ....+. ..+.....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~---~~g~l~----~~~~~~~~ 661 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYE---EGGQLT----EAVRRRPY 661 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC-----------------CHH----HHHHHCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCcc---ccchHH----HHHHhCCC
Confidence 3788999999999999999999887666778888876544321 122223221111000 011122 22223446
Q ss_pred eEEEEecccccC
Q 017792 138 DVVVVDSVAALV 149 (366)
Q Consensus 138 ~lvviDsl~~l~ 149 (366)
.++++|.+..+.
T Consensus 662 ~vl~lDEi~~l~ 673 (854)
T 1qvr_A 662 SVILFDEIEKAH 673 (854)
T ss_dssp EEEEESSGGGSC
T ss_pred eEEEEecccccC
Confidence 799999997664
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0059 Score=61.43 Aligned_cols=91 Identities=11% Similarity=0.110 Sum_probs=56.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH----HHhhcCCeEEEEeCCCCC--CH-----HHHhhcccccC--cceecCCCCHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIA----EAQRQGGYCVFIDAEHAL--DP-----SLAETIGVKTE--NLLLAQPDCGEQ 123 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~----~~~~~gg~vl~id~e~~~--~~-----~~~~~ig~~~~--~~~~~~~~~~e~ 123 (366)
...++.|+|..|.||||||.+++. .....-..++|++..... +. .+...++.... .+.-....+.++
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~ 230 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVV 230 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHH
Confidence 457999999999999999999985 233222457888765543 21 23444543321 111112234556
Q ss_pred HHHHHHHHHhcCCceEEEEecccc
Q 017792 124 ALSLVDTLIRSGSVDVVVVDSVAA 147 (366)
Q Consensus 124 ~l~~~~~~~~~~~~~lvviDsl~~ 147 (366)
+...+...+...+.-++|+|.+..
T Consensus 231 l~~~l~~~L~~~kr~LlVLDdv~~ 254 (549)
T 2a5y_B 231 LKRMICNALIDRPNTLFVFDDVVQ 254 (549)
T ss_dssp HHHHHHHHHTTSTTEEEEEEEECC
T ss_pred HHHHHHHHHcCCCcEEEEEECCCC
Confidence 667777666554367999998865
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0044 Score=57.50 Aligned_cols=42 Identities=21% Similarity=0.166 Sum_probs=33.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 98 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~ 98 (366)
.+.-+.|+|++|+|||+++..+.......+...++++.....
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~ 65 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALN 65 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCC
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCC
Confidence 445688999999999999999988776666777888775443
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0014 Score=56.00 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++.++.|.|++||||||++..++..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999999999997765
|
| >3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0015 Score=63.90 Aligned_cols=55 Identities=20% Similarity=0.246 Sum_probs=44.9
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC----eEEEEe
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG----YCVFID 93 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg----~vl~id 93 (366)
.+.+.||+..+|.++. +-+|+-..|+|++|+|||+|+.+++......+. .|+|.-
T Consensus 132 ~e~l~TGiraID~l~p---igrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~ 190 (465)
T 3vr4_D 132 DEFIQTGISAIDHLNT---LVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAA 190 (465)
T ss_dssp CCBCBCSCHHHHTTSC---CBTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEE
T ss_pred ccccccCceEEecccc---cccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEE
Confidence 4578999999999998 889999999999999999999888776654323 566653
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0015 Score=57.77 Aligned_cols=40 Identities=30% Similarity=0.416 Sum_probs=26.0
Q ss_pred cccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 38 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 38 ~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
-+|.|...-+ .-+++..++.|+|||||||+|.|..++..+
T Consensus 14 ~~p~~~~~~~-----~~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 14 LVPRGSHMTD-----QKLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp ---------------CCTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCCCccccc-----hhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455554433 345688899999999999999999998766
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.013 Score=54.71 Aligned_cols=64 Identities=20% Similarity=0.196 Sum_probs=40.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCce
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVD 138 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~ 138 (366)
..+.|+||+|+|||+|+..++..+ +...+.++..... ...++...+. ......
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~~---------------------~~~~~~~~~~---~~~~~~ 108 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMIE---------------------KSGDLAAILT---NLSEGD 108 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGCC---------------------SHHHHHHHHH---TCCTTC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhcc---------------------chhHHHHHHH---hccCCC
Confidence 358999999999999999996654 4445555532111 1222222222 234568
Q ss_pred EEEEecccccC
Q 017792 139 VVVVDSVAALV 149 (366)
Q Consensus 139 lvviDsl~~l~ 149 (366)
+++||.+..+.
T Consensus 109 vl~lDEi~~l~ 119 (338)
T 3pfi_A 109 ILFIDEIHRLS 119 (338)
T ss_dssp EEEEETGGGCC
T ss_pred EEEEechhhcC
Confidence 99999998775
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0013 Score=55.41 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=24.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
.++.|.|+|||||||++..++.. ..+ ..+++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~---~~~-~~~i~~ 34 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK---NPG-FYNINR 34 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STT-EEEECH
T ss_pred eEEEEecCCCCCHHHHHHHHHhh---cCC-cEEecH
Confidence 47899999999999999998762 122 456664
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0015 Score=55.30 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.++.++.|.|++||||||++..++..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999987665
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0016 Score=55.38 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+.++.|+|++||||||++..++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998765
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.022 Score=53.38 Aligned_cols=98 Identities=14% Similarity=0.057 Sum_probs=51.7
Q ss_pred HHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhc--ccccCcceecC-----
Q 017792 45 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETI--GVKTENLLLAQ----- 117 (366)
Q Consensus 45 ~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~i--g~~~~~~~~~~----- 117 (366)
.|-..+..|-++ ..+.++||+|+|||++++.++..+...... +.+.-....-.+.+ +..++ +....
T Consensus 13 ~l~~~i~~~~~~--~a~L~~G~~G~GKt~~a~~la~~l~~~~~~----~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 85 (334)
T 1a5t_A 13 KLVASYQAGRGH--HALLIQALPGMGDDALIYALSRYLLCQQPQ----GHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGK 85 (334)
T ss_dssp HHHHHHHTTCCC--SEEEEECCTTSCHHHHHHHHHHHHTCSSCB----TTBCCSCSHHHHHHHHTCCTT-EEEECCCTTC
T ss_pred HHHHHHHcCCcc--eeEEEECCCCchHHHHHHHHHHHHhCCCCC----CCCCCCCCHHHHHHhcCCCCC-EEEEeccccC
Confidence 444444313333 359999999999999999999887533211 00000010111111 11121 22222
Q ss_pred -CCCHHHHHHHHHHHHh---cCCceEEEEecccccC
Q 017792 118 -PDCGEQALSLVDTLIR---SGSVDVVVVDSVAALV 149 (366)
Q Consensus 118 -~~~~e~~l~~~~~~~~---~~~~~lvviDsl~~l~ 149 (366)
...++++.+.+..+.. .+..++++||.+..+.
T Consensus 86 ~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~ 121 (334)
T 1a5t_A 86 NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT 121 (334)
T ss_dssp SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC
T ss_pred CCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcC
Confidence 2345665555444322 2457899999998775
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0013 Score=61.81 Aligned_cols=24 Identities=42% Similarity=0.472 Sum_probs=22.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+.+.|+||||+|||||++.+++.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 579999999999999999999887
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0014 Score=55.75 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+.++.|.|++||||||++..++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999987655
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0012 Score=54.99 Aligned_cols=20 Identities=35% Similarity=0.473 Sum_probs=18.4
Q ss_pred CEEEEEcCCCCcHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHV 78 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l 78 (366)
.++.|.|++||||||++..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999988
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0011 Score=60.08 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=25.6
Q ss_pred cCC---CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 55 LPK---GRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 55 i~~---G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+.+ |+++.|+|++||||||+++.++..+
T Consensus 42 i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 42 VKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp THHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 567 9999999999999999999998866
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0048 Score=64.54 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=30.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
.+.|+||+|+|||++++.++..+...+..+++++..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s 558 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMS 558 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEech
Confidence 589999999999999999999886666778888753
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0016 Score=58.92 Aligned_cols=23 Identities=43% Similarity=0.774 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++.|+||||||||||+..++..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 78999999999999999998765
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0014 Score=56.84 Aligned_cols=21 Identities=38% Similarity=0.412 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
+++|.|++||||||++..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999876
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0012 Score=56.73 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+.+.++.|.|++||||||++..++..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998765
|
| >3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.005 Score=61.62 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=44.5
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 93 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id 93 (366)
.+.+.||+..+|.++. +-+|+-.+|+|++|+|||+|+.+++... ...-++|..
T Consensus 213 ~epl~TGirvID~l~P---igrGqr~~Ifgg~g~GKT~L~~~ia~~~--~~~v~V~~~ 265 (600)
T 3vr4_A 213 DVPMITGQRVIDTFFP---VTKGGAAAVPGPFGAGKTVVQHQIAKWS--DVDLVVYVG 265 (600)
T ss_dssp CSBCCCCCHHHHHHSC---CBTTCEEEEECCTTSCHHHHHHHHHHHS--SCSEEEEEE
T ss_pred CceecccchhhhccCC---ccCCCEEeeecCCCccHHHHHHHHHhcc--CCCEEEEEE
Confidence 5688999999999998 8899999999999999999999887653 234566654
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0015 Score=56.42 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
+++|.|++||||||++..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
|
| >1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0091 Score=53.64 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=35.0
Q ss_pred CCCEEEEE-cCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 57 KGRVVEIY-GPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 57 ~G~ii~I~-G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
.+.++.|+ +..|+||||++..++..+...|.+|+++|.+..
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 46 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ 46 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 45678887 568999999999999999988889999998753
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0021 Score=55.29 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+|.++.|.|++||||||++..++..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999987765
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.014 Score=53.92 Aligned_cols=66 Identities=20% Similarity=0.239 Sum_probs=42.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCc
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSV 137 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~ 137 (366)
...+.|+||+|+|||+|+..++..+ +..+++++...... ..++...+.. .....
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~---------------------~~~l~~~l~~--~~~~~ 91 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIEK---------------------PGDLAAILAN--SLEEG 91 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCCS---------------------HHHHHHHHTT--TCCTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccCC---------------------hHHHHHHHHH--hccCC
Confidence 3568899999999999999998766 34566665432211 1222222211 01356
Q ss_pred eEEEEecccccC
Q 017792 138 DVVVVDSVAALV 149 (366)
Q Consensus 138 ~lvviDsl~~l~ 149 (366)
.++++|.+..+.
T Consensus 92 ~~l~lDEi~~l~ 103 (324)
T 1hqc_A 92 DILFIDEIHRLS 103 (324)
T ss_dssp CEEEETTTTSCC
T ss_pred CEEEEECCcccc
Confidence 799999998765
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0015 Score=60.47 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=29.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 98 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~ 98 (366)
++-+++|.|++||||||++..++..+...+..+.+++.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 456899999999999999999988765445556778766543
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0017 Score=57.26 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=22.5
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+..++.++.|.|++||||||++..++..+
T Consensus 3 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 3 ASARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp ----CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34567899999999999999999987654
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0024 Score=55.12 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+.++.|.|++||||||++..++..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
|
| >2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.024 Score=56.64 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=29.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
...++.++|.|||||||++..++..+...+-.+..++.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~ 71 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNV 71 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecc
Confidence 34689999999999999999999877555544555553
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0024 Score=55.98 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+|.++.|.|++||||||++..++..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998765
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0029 Score=59.78 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=27.9
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
.|..+|..+.|+||||+|||+|++.++..+..
T Consensus 65 ~~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 65 EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46666889999999999999999999988753
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.002 Score=54.37 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++.|.|+|||||||++..++..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998765
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0014 Score=55.52 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=18.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++.++.|.|++||||||++..++..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56799999999999999999987654
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0041 Score=55.78 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=34.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
+.-++.+.|.+|+|||||+..++..+. .+.+++.++.+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTG 52 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSS
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 446899999999999999999999988 8888999987643
|
| >3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.018 Score=54.17 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=39.9
Q ss_pred HHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 45 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 45 ~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
.|+.++. . +.-.++.+.|..|+||||++..++..+...|.+|+.+|.+.
T Consensus 6 ~l~~~l~-~--~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~ 54 (334)
T 3iqw_A 6 TLQSILD-Q--RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDP 54 (334)
T ss_dssp SSHHHHH-C--TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCS
T ss_pred cHHHHhc-C--CCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 3455565 2 22468889999999999999999999998899999999873
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.00094 Score=57.77 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=24.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+++|..++|+|+||+|||||++.+++..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 6789999999999999999998886543
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0024 Score=54.83 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++.|.|++||||||++..++..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998766
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0041 Score=54.74 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=31.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 93 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id 93 (366)
.+|.++.|.|++||||||++..++..+...+-.++...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 46889999999999999999999988877666665443
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0023 Score=62.42 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=25.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
+++|++++|+||||||||||+..++..+..
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 446889999999999999999999887654
|
| >3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.03 Score=53.33 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=35.3
Q ss_pred CCCCEEEEEc-CCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 56 PKGRVVEIYG-PEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 56 ~~G~ii~I~G-~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
.+++++.|++ ..|+||||++..++..+...|.+|+++|.+
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 3567888886 799999999999999999888899999987
|
| >3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.002 Score=62.98 Aligned_cols=46 Identities=17% Similarity=0.282 Sum_probs=40.9
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
.+.+.||+..+|.++. +-+|+-..|+|++|+|||+|+.+++.....
T Consensus 128 ~e~l~TGiraID~l~p---igrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a 173 (464)
T 3gqb_B 128 EQFIQTGISTIDVMNT---LVRGQKLPIFSGSGLPANEIAAQIARQATV 173 (464)
T ss_dssp CCBCBCSCHHHHTTSC---CBTTCBCCEEEETTSCHHHHHHHHHHHCBC
T ss_pred cccccCcceeeecccc---cccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 5678999999999998 889999999999999999999888776543
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.003 Score=56.84 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=28.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEeCC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAE 95 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~-----gg~vl~id~e 95 (366)
-+++|.|++||||||++..++..+... +..+++++.+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D 64 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQD 64 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecC
Confidence 589999999999999999988765321 3345666654
|
| >3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.025 Score=50.38 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=33.3
Q ss_pred CCEEEEEc-CCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 58 GRVVEIYG-PEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 58 G~ii~I~G-~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
++++.|++ ..|+||||++..++..+...|.+|+++|.+.
T Consensus 2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 35666755 5889999999999999998888999999875
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0021 Score=65.56 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=32.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
+..|+.+.|+||||+|||||++.+++.+.+.....+++...
T Consensus 57 i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~ 97 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPN 97 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECC
T ss_pred ccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCC
Confidence 45678999999999999999999999887665444555443
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0032 Score=56.00 Aligned_cols=29 Identities=31% Similarity=0.365 Sum_probs=24.5
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
..++|.++.|.|++||||||++..++..+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45788999999999999999999887755
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0029 Score=52.31 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+++|+|||||||||++..+...+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999988877544
|
| >2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0028 Score=62.20 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=45.3
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc----CCeEEEEe
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ----GGYCVFID 93 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~----gg~vl~id 93 (366)
.+.+.||+..+|.++. +-+|+-++|+|++|+|||+|+.+++...... +..|+|.-
T Consensus 133 ~e~l~TGir~ID~l~p---igrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~ 191 (469)
T 2c61_A 133 KDFIQTGISTIDGTNT---LVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAA 191 (469)
T ss_dssp CSBCBCSCHHHHTTSC---CBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEE
T ss_pred ccccceeeEeeeeeec---cccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEE
Confidence 4678999999999998 8899999999999999999999888876532 12456643
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0026 Score=60.58 Aligned_cols=26 Identities=38% Similarity=0.649 Sum_probs=23.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
+++| +++|+|||||||||++..+...
T Consensus 24 ~~~g-~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 24 FPEG-VTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred EcCC-eEEEECCCCCChhHHHHHHHHh
Confidence 5578 9999999999999999988864
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0042 Score=58.97 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=34.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
...+++|+|++|+|||||+..++..+...+.+|..++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 3458999999999999999999999887788888888763
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.022 Score=59.50 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=47.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH-HHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCce
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-SLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVD 138 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~-~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~ 138 (366)
.+.|+||+|+|||++++.++..+ +..++.++.....+. ...+.+|..+. ....+.-..+...++.....
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~~~~~~~~~l~g~~~g-------~~g~~~~~~l~~~~~~~~~~ 559 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGAPPG-------YVGFDQGGLLTDAVIKHPHA 559 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCSSSSCCSSSCCCCSC-------SHHHHHTTHHHHHHHHCSSE
T ss_pred EEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhhcchhhHhhhcCCCCC-------CcCccccchHHHHHHhCCCc
Confidence 68899999999999999998877 456777775433221 11122232211 11111111122333445578
Q ss_pred EEEEecccccC
Q 017792 139 VVVVDSVAALV 149 (366)
Q Consensus 139 lvviDsl~~l~ 149 (366)
++++|.+..+.
T Consensus 560 vl~lDEi~~~~ 570 (758)
T 1r6b_X 560 VLLLDEIEKAH 570 (758)
T ss_dssp EEEEETGGGSC
T ss_pred EEEEeCccccC
Confidence 99999998764
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0028 Score=55.70 Aligned_cols=26 Identities=31% Similarity=0.201 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++.++.|.|++||||||++..++..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.014 Score=61.86 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=41.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh-------cCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHH-HHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQR-------QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALS-LVDTL 131 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~-------~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~-~~~~~ 131 (366)
-+.|+||||+|||+++..++..+.. .+..+++++...... |.. +. ...++.+. .+...
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-------g~~------~~-g~~~~~l~~~~~~~ 258 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-------GAK------YR-GEFEERLKAVIQEV 258 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------------------CHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------cCc------cc-hHHHHHHHHHHHHH
Confidence 4789999999999999999998754 245667766432111 000 00 11223222 23333
Q ss_pred HhcCCceEEEEecccccCC
Q 017792 132 IRSGSVDVVVVDSVAALVP 150 (366)
Q Consensus 132 ~~~~~~~lvviDsl~~l~~ 150 (366)
.......+++||.+..+.+
T Consensus 259 ~~~~~~~iL~IDEi~~l~~ 277 (854)
T 1qvr_A 259 VQSQGEVILFIDELHTVVG 277 (854)
T ss_dssp HTTCSSEEEEECCC-----
T ss_pred HhcCCCeEEEEecHHHHhc
Confidence 2333567999999998874
|
| >2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.012 Score=59.15 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=29.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhc----CCeEEEEeCCC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQ----GGYCVFIDAEH 96 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~----gg~vl~id~e~ 96 (366)
+--++|+|.+|||||++++.++..+... .-.++.+|...
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 3468999999999999999988876532 23566677653
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0023 Score=59.92 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+++|.|++|||||||++++++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 589999999999999999998865
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0027 Score=53.90 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.++.|.|++||||||++..++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999997765
|
| >3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0051 Score=61.33 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=44.8
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 93 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id 93 (366)
..+.+.||+..+|.++. +-+|+-.+|+|++|+|||+|+.+++... ...-++|..
T Consensus 201 ~~epl~TGirvID~l~P---igrGqr~~Ifg~~g~GKT~l~~~ia~~~--~~~v~V~~~ 254 (578)
T 3gqb_A 201 PNTPFLTGMRILDVLFP---VAMGGTAAIPGPFGSGKSVTQQSLAKWS--NADVVVYVG 254 (578)
T ss_dssp SCSEECCSCHHHHTTSC---EETTCEEEECCCTTSCHHHHHHHHHHHS--SCSEEEEEE
T ss_pred CCCcccccchhhhhccc---ccCCCEEeeeCCCCccHHHHHHHHHhcc--CCCEEEEEE
Confidence 35788999999999998 8899999999999999999999887653 234566654
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0026 Score=64.02 Aligned_cols=27 Identities=33% Similarity=0.524 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
+|.+++|+||||+|||||++.++..+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 789999999999999999999988774
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0032 Score=55.19 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+|..+.|.|++||||||++..++..+
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998766
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.024 Score=52.67 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=29.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
.++.|+|++|+|||||+.+++..+. ..++|++...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~---~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN---LPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT---CCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC---CCEEEEEchh
Confidence 5999999999999999999987763 3468888653
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0039 Score=56.28 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=32.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
+.-+.|+|++|+|||++++.++......+..+++++....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence 3568899999999999999998877665667888876543
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0035 Score=54.87 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=24.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
++.|.|||||||+|.|..++..+ .+.++++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-----g~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-----GFVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCeEEcHH
Confidence 57899999999999999998766 24567653
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.003 Score=54.41 Aligned_cols=24 Identities=42% Similarity=0.616 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+.++|+||+|+|||||+..++...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999887664
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0063 Score=54.43 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=30.6
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCe-EEEE
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY-CVFI 92 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~-vl~i 92 (366)
+.-.+|.++.|.|++||||||++..++..+...+-. +++.
T Consensus 22 ~~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 22 SNAMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp ----CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 445568899999999999999999999888776666 4444
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0018 Score=60.21 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHH-HhhcCC
Q 017792 61 VEIYGPEASGKTTLALHVIAE-AQRQGG 87 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~-~~~~gg 87 (366)
++|+|+||+|||||++.+++. ..+..+
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~~~~~~~g 48 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLTDLYPERV 48 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC--------
T ss_pred EEEECCCCCCHHHHHHHHhCCCccCCCC
Confidence 489999999999999998875 544444
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0039 Score=52.08 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+++.|.|++||||||++..++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999987765
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.025 Score=52.43 Aligned_cols=72 Identities=17% Similarity=0.119 Sum_probs=43.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh-
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR- 133 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~---gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~- 133 (366)
...+.++||+|+||||++..++..+... ...+++++.+. ....++++.+.+.....
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~--------------------~~~~id~ir~li~~~~~~ 77 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG--------------------ENIGIDDIRTIKDFLNYS 77 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS--------------------SCBCHHHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc--------------------CCCCHHHHHHHHHHHhhc
Confidence 3489999999999999999998753211 11233333211 01234444444433321
Q ss_pred --cCCceEEEEecccccC
Q 017792 134 --SGSVDVVVVDSVAALV 149 (366)
Q Consensus 134 --~~~~~lvviDsl~~l~ 149 (366)
.+..++++||.+..+.
T Consensus 78 p~~~~~kvviIdead~lt 95 (305)
T 2gno_A 78 PELYTRKYVIVHDCERMT 95 (305)
T ss_dssp CSSSSSEEEEETTGGGBC
T ss_pred cccCCceEEEeccHHHhC
Confidence 2357899999998875
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0037 Score=54.46 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+.|.|++||||||++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999987765
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0034 Score=54.15 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
..++.|.|++||||||++..++..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999887654
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0037 Score=53.06 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
..++.|.|++||||||++..++..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999987755
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0037 Score=55.84 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.-++.|.||+||||||++..++..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998766
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0043 Score=55.59 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=23.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.++.++.|.|++||||||++..++..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 366789999999999999999998665
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0038 Score=52.16 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.++.|.|++||||||++..++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999997765
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0052 Score=54.65 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=29.0
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc----CCeEEEEe
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ----GGYCVFID 93 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~----gg~vl~id 93 (366)
|-..+|.++.|.|++||||||++..++..+... +-.+++..
T Consensus 20 ~~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 20 GSMARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp ---CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred ccccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 345689999999999999999999999888765 66665443
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0079 Score=52.91 Aligned_cols=36 Identities=31% Similarity=0.369 Sum_probs=29.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC-eEEEE
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFI 92 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg-~vl~i 92 (366)
+|.++.|.|++||||||.+..++..+...+. .+++.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 4789999999999999999999988877665 44443
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0039 Score=53.32 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
.++|+|+||+|||||++.+++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 689999999999999999987653
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0045 Score=54.10 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
++.+++|.|++||||||++..++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998865
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.007 Score=55.45 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=27.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
.-+.|+||||+|||++++.++..+ +..+++++..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~ 84 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEAT 84 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcch
Confidence 458899999999999999998876 3456777653
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0044 Score=53.16 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
..+++|.|++||||||++..++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 458999999999999999988663
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0043 Score=54.12 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+.|.|++||||||++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999987654
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0076 Score=54.86 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=29.5
Q ss_pred HHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 46 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 46 LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
|...|. |..|+...+.|+||||+|||+|+..++..+.
T Consensus 93 l~~~l~-~~~~~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 93 FLGWAT-KKFGKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp HHHHHT-TCSTTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred HHHHHh-CCCCCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 455566 5557777899999999999999998887653
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0043 Score=53.25 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
.++|+|++|+|||||+..+++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0055 Score=50.95 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++.|.|++||||||++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999987755
|
| >1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.17 Score=40.01 Aligned_cols=86 Identities=21% Similarity=0.220 Sum_probs=71.4
Q ss_pred CCEEEEE-cCCCCcHHHHHHHHHHHHhh--cCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 58 GRVVEIY-GPEASGKTTLALHVIAEAQR--QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 58 G~ii~I~-G~~GsGKTTL~~~l~~~~~~--~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
+.+++|. -.+|.|=..|+.-++..+.. .++.++||..............|++++++.+.++.+..+.++.+++.++.
T Consensus 2 ~~l~Ell~~~~g~~e~~lLlp~L~~l~~~~~~r~ilwi~pp~~~~~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrs 81 (119)
T 1ofu_X 2 AAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRL 81 (119)
T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHHHTTCSSSSEEEEESCCTTSCHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHH
T ss_pred CceEEEeecCCCccHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhc
Confidence 3466664 45788877777777777765 67899999988777888888999999999999999999999999999999
Q ss_pred CCceEEEEe
Q 017792 135 GSVDVVVVD 143 (366)
Q Consensus 135 ~~~~lvviD 143 (366)
+....|+..
T Consensus 82 g~~~aVl~w 90 (119)
T 1ofu_X 82 GRSHTVVSW 90 (119)
T ss_dssp TCEEEEEEC
T ss_pred CCccEEEEC
Confidence 988887764
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0029 Score=57.10 Aligned_cols=75 Identities=23% Similarity=0.356 Sum_probs=43.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
.++| +.|+||||+|||+|+..++..+. ..+++++....... ..|... .....++..+. .
T Consensus 43 ~~~~--vll~G~~GtGKT~la~~la~~~~---~~~~~v~~~~~~~~----~~~~~~--------~~~~~~~~~a~----~ 101 (268)
T 2r62_A 43 IPKG--VLLVGPPGTGKTLLAKAVAGEAH---VPFFSMGGSSFIEM----FVGLGA--------SRVRDLFETAK----K 101 (268)
T ss_dssp CCSC--CCCBCSSCSSHHHHHHHHHHHHT---CCCCCCCSCTTTTS----CSSSCS--------SSSSTTHHHHH----H
T ss_pred CCce--EEEECCCCCcHHHHHHHHHHHhC---CCEEEechHHHHHh----hcchHH--------HHHHHHHHHHH----h
Confidence 4444 78999999999999999988763 33344443221110 011111 11112222222 2
Q ss_pred CCceEEEEecccccCC
Q 017792 135 GSVDVVVVDSVAALVP 150 (366)
Q Consensus 135 ~~~~lvviDsl~~l~~ 150 (366)
..+.++++|.+..+.+
T Consensus 102 ~~~~vl~iDEid~l~~ 117 (268)
T 2r62_A 102 QAPSIIFIDEIDAIGK 117 (268)
T ss_dssp SCSCEEEESCGGGTTC
T ss_pred cCCeEEEEeChhhhcc
Confidence 3578999999988864
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0064 Score=52.35 Aligned_cols=23 Identities=48% Similarity=0.664 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++.|.|++||||||++..++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999997765
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0073 Score=53.49 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++..+.|.|++||||||++..++..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998776
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0078 Score=53.36 Aligned_cols=40 Identities=25% Similarity=0.268 Sum_probs=32.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAE 95 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e 95 (366)
.+|.++.|.|++||||||++..++..+.. .+-.++++..+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tre 59 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTRE 59 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEES
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeC
Confidence 36889999999999999999999998877 66666653434
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0089 Score=56.38 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+++|+||+|||||||+..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 489999999999999999998765
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0068 Score=52.76 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+++|+|||||||||++..+...+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 499999999999999988776554
|
| >1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0048 Score=62.60 Aligned_cols=91 Identities=15% Similarity=0.101 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcCCCceEeccCC-CCC---CCCCcccCCh-----------------HHHHHhhCCC-CcCCCCEEEE
Q 017792 6 LALQQALDQITSSFGKGSIMWLGRS-VTP---RHVPVVSTGS-----------------FALDIALGTG-GLPKGRVVEI 63 (366)
Q Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~-~~~---~~~~~i~TG~-----------------~~LD~~L~~G-Gi~~G~ii~I 63 (366)
+...+++++|+..|+.-.+..+--. ... .....+.+++ +.||.+++ + +-....++.+
T Consensus 254 ~~~~~~l~~~~~~~~~~~i~~vPl~~~e~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~ 332 (589)
T 1ihu_A 254 EREQEALANLPADLAGLPTDTLFLQPVNMVGVSALSRLLSTQPVASPSSDEYLQQRPDIPSLSALVD-DIARNEHGLIML 332 (589)
T ss_dssp HHHHHHHHTCCHHHHTSCEEEEECCSSCCCSHHHHHHTTCSCC-----------CCCCCCCHHHHHH-HHHTTSCEEEEE
T ss_pred HHHHHHHHHHHHhccCCCEEEecCCCCCCCCHHHHHHHHhhhhccccccccccccccccchhhhhhh-hhhccCCeEEEE
Confidence 3455666777777765543322100 011 1133445555 56777665 3 2233457777
Q ss_pred EcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 64 ~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
.|.+|+||||++..++..+...|.+++++|.+..
T Consensus 333 ~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~ 366 (589)
T 1ihu_A 333 MGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA 366 (589)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred ecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCc
Confidence 8999999999999999999988989999998743
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0068 Score=53.41 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++.|.|++||||||++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0049 Score=53.64 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
.|..++|.||+|+|||||+..++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3677999999999999999888654
|
| >1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0096 Score=53.64 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=33.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
++.|.|..|+||||++..++..+...|.+|+++|.+..
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q 40 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCC
Confidence 56778999999999999999999988889999998743
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0073 Score=57.25 Aligned_cols=28 Identities=25% Similarity=0.270 Sum_probs=23.8
Q ss_pred CCCCE--EEEEcCCCCcHHHHHHHHHHHHh
Q 017792 56 PKGRV--VEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 56 ~~G~i--i~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
++|++ +.|+|++||||||+++.++..+.
T Consensus 20 ~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 20 EDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 45555 99999999999999999988764
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.065 Score=55.88 Aligned_cols=80 Identities=13% Similarity=0.137 Sum_probs=47.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhc-------CCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQ-------GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-------gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
.+.-+.|+||+|+|||+++..++..+... +..++.++...... +. ......++.+..+.
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~-------~~-------~~~g~~e~~l~~~~ 271 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA-------GT-------KYRGDFEKRFKALL 271 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C-------CC-------CCSSCHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc-------cc-------cccchHHHHHHHHH
Confidence 45678999999999999999999877542 22222222111000 00 01123444444443
Q ss_pred HHHhcCCceEEEEecccccCC
Q 017792 130 TLIRSGSVDVVVVDSVAALVP 150 (366)
Q Consensus 130 ~~~~~~~~~lvviDsl~~l~~ 150 (366)
..+......+++||.+..+.+
T Consensus 272 ~~~~~~~~~iL~IDEi~~l~~ 292 (758)
T 1r6b_X 272 KQLEQDTNSILFIDEIHTIIG 292 (758)
T ss_dssp HHHSSSSCEEEEETTTTTTTT
T ss_pred HHHHhcCCeEEEEechHHHhh
Confidence 444444568999999998874
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0077 Score=58.01 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=26.1
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
|=+++|..++|+|+||+|||||++.+++
T Consensus 15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 15 GRPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 5688899999999999999999999988
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0086 Score=58.80 Aligned_cols=40 Identities=30% Similarity=0.324 Sum_probs=30.1
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
|..++.-+.|+||||+|||+|++.++..+... ...++++.
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~~~-~~~~~~~~ 98 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQELGSK-VPFCPMVG 98 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT-SCEEEEEG
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC-ceEEEEeH
Confidence 55555668999999999999999998886432 44555554
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.013 Score=50.87 Aligned_cols=37 Identities=24% Similarity=0.158 Sum_probs=29.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
..+.|+|++|+|||||+..++...... .++..++.+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~ 67 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDV 67 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCC
Confidence 478999999999999999999876544 4566666543
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.008 Score=52.39 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+.|.|++||||||++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.011 Score=56.06 Aligned_cols=35 Identities=29% Similarity=0.250 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
++.-+.|+||||+|||++++.++..+ +...+.++.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~~ 84 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL---DVPFTMADA 84 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEech
Confidence 45568999999999999999998776 445555543
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.1 Score=51.22 Aligned_cols=35 Identities=17% Similarity=0.083 Sum_probs=26.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 92 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~i 92 (366)
..++.++|.+||||||++..++..+....-.+..+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~ 73 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREF 73 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEE
Confidence 45899999999999999999988765443333333
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0087 Score=61.45 Aligned_cols=39 Identities=28% Similarity=0.406 Sum_probs=32.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
...+..|.||||+|||+++.+++..+...+.+++....-
T Consensus 204 ~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 204 QKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp CSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 456999999999999999999998888888887776654
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.022 Score=55.79 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
.++|+|++|+|||||+..+++
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEE
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 799999999999999988854
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0063 Score=51.01 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
+|..++|+|++|+|||||+..++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999988653
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.014 Score=50.89 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=27.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 92 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~i 92 (366)
|.++.|-|..||||||++..++..+. .+..+++.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~ 35 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMT 35 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEe
Confidence 56899999999999999999988775 35565554
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0096 Score=51.44 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
...+++|+|++||||||++..++..+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999987753
|
| >3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.016 Score=51.16 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=34.8
Q ss_pred CCCEEEEEcC-CCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCC
Q 017792 57 KGRVVEIYGP-EASGKTTLALHVIAEAQRQ-GGYCVFIDAEHA 97 (366)
Q Consensus 57 ~G~ii~I~G~-~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~ 97 (366)
.++++.+++. .|+||||++..++..+... |.+|+++|.+..
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 4567777754 8999999999999999988 899999998754
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.012 Score=56.03 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=27.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
....+.|+||+|+|||++++.++..+ +..++.++.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~~ 105 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL---DIPIAISDA 105 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh---CCCEEEecc
Confidence 44568899999999999999998766 455666664
|
| >3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.044 Score=52.34 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=33.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
.++.+.|..|+||||++..++..+...|.+|+++|.
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 477889999999999999999999988999999998
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.05 Score=58.56 Aligned_cols=42 Identities=26% Similarity=0.224 Sum_probs=32.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH--h-hcCCeEEEEeCCCCCC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEA--Q-RQGGYCVFIDAEHALD 99 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~--~-~~gg~vl~id~e~~~~ 99 (366)
..++.|+|+.|.|||||+.+++... . .....++|++.....+
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d 194 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSS
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCC
Confidence 5799999999999999999998532 2 2344588988766554
|
| >3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.021 Score=52.04 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=36.1
Q ss_pred CCCEEEEEcC-CCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 57 KGRVVEIYGP-EASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 57 ~G~ii~I~G~-~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
+..++.|+++ +|+||||++..++..+...|.+|++||.+..
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~ 122 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMR 122 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4578989876 8999999999999999988899999998743
|
| >2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.014 Score=53.40 Aligned_cols=39 Identities=23% Similarity=0.410 Sum_probs=34.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
.++.|.|..|+||||++..++..+...|.+|+.+|.+..
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q 41 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK 41 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 367778999999999999999999988889999998754
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0087 Score=58.77 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCC-eEEEEeC
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFIDA 94 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg-~vl~id~ 94 (366)
.+.|.|++||||||++..++..+...+. .++.+..
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~ 82 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAP 82 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecC
Confidence 9999999999999999999998887765 5666654
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0088 Score=56.30 Aligned_cols=27 Identities=22% Similarity=0.473 Sum_probs=23.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.++.++.|+||+|||||||+..++..+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC
Confidence 456799999999999999999886644
|
| >3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.016 Score=54.04 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=37.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
+..-++++|+|.-|.||||++..++..+...|.+|+.+|.+.
T Consensus 45 i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dp 86 (314)
T 3fwy_A 45 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 86 (314)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CCCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 556689999999999999999999999999999999999874
|
| >3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.02 Score=52.92 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=36.1
Q ss_pred CCCEEEEEcC-CCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 57 KGRVVEIYGP-EASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 57 ~G~ii~I~G~-~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
++.++.|+++ +|+||||++..++..+...|.+|++||.+..
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r 144 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 144 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4578989887 7999999999999999988889999998753
|
| >3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.025 Score=53.50 Aligned_cols=48 Identities=17% Similarity=0.193 Sum_probs=40.2
Q ss_pred HHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCeEEEEeCC
Q 017792 45 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAE 95 (366)
Q Consensus 45 ~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~--~~gg~vl~id~e 95 (366)
.|+.++. . +.-+++.+.|..|+||||++..++..+. ..|.+|+.+|.+
T Consensus 8 ~L~~~l~-~--~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 8 TLESIVQ-H--DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp SSHHHHT-C--TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred hHHHHhc-C--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 4566666 2 2337999999999999999999999998 788899999997
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.015 Score=50.60 Aligned_cols=123 Identities=13% Similarity=0.070 Sum_probs=59.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEeC-CCCCCHHHHhhcccccCcceecCC-CCHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDA-EHALDPSLAETIGVKTENLLLAQP-DCGEQALSLVDTL 131 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~-----~~gg~vl~id~-e~~~~~~~~~~ig~~~~~~~~~~~-~~~e~~l~~~~~~ 131 (366)
-++.|.|+||||||+++..++.... ..|.+.+|+.. ++...... ............... ...+.+.+.+.
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~-~~~~~k~~~~~~~~~~~~~~~~~~~~~-- 82 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHT-YIETDAKKLPKSTDEQLSAHDMYEWIK-- 82 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCE-EEECCTTTCSSCCSSCEEGGGHHHHTT--
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCcccccc-ccchhhhhccccCcccccHHHHHHHhh--
Confidence 4899999999999999887755543 33414455443 22111000 000000000000000 01122222210
Q ss_pred HhcCCceEEEEecccccCCCC-ccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccc
Q 017792 132 IRSGSVDVVVVDSVAALVPKG-ELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKL 198 (366)
Q Consensus 132 ~~~~~~~lvviDsl~~l~~~~-~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~ 198 (366)
...+...+++||....+++.. +.. +.. | .+..+. .-++.+..||+++|..+.+
T Consensus 83 ~~~~~~~vliIDEAq~l~~~~~~~~----e~~-----r----ll~~l~-~~r~~~~~iil~tq~~~~l 136 (199)
T 2r2a_A 83 KPENIGSIVIVDEAQDVWPARSAGS----KIP-----E----NVQWLN-THRHQGIDIFVLTQGPKLL 136 (199)
T ss_dssp SGGGTTCEEEETTGGGTSBCCCTTC----CCC-----H----HHHGGG-GTTTTTCEEEEEESCGGGB
T ss_pred ccccCceEEEEEChhhhccCccccc----hhH-----H----HHHHHH-hcCcCCeEEEEECCCHHHH
Confidence 123457899999999986422 111 111 1 122222 1245688999999985543
|
| >3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.012 Score=52.04 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=33.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
+.|.|..|+||||++..++..+...|.+|+.+|.+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD 39 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5568999999999999999999988999999998764
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=95.23 E-value=0.012 Score=55.51 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+++|+|||||||||++-.++..+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 499999999999999988775543
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.011 Score=48.89 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
.++|+|++|+|||||+..+++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998753
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.018 Score=58.64 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
+|.++.|.|.+||||||++..++..+...+-.++++|.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 67899999999999999999999887665666666663
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.011 Score=50.15 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
.|.-++|.|++|+||||+++.++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 366799999999999999998865
|
| >1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.018 Score=55.96 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=32.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
.-+.|+|++|||||+++..++..+...+..++.+|...
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkg 91 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNG 91 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 46889999999999999888888888888888888654
|
| >1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.024 Score=49.78 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=32.5
Q ss_pred CEEEEEc-CCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 59 RVVEIYG-PEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 59 ~ii~I~G-~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
+++.|++ ..|+||||++..++..+...|.+|+++|.+.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 4566665 5899999999999999998888999999875
|
| >3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.023 Score=49.18 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 93 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id 93 (366)
++.|-|..||||||.+..++..+...|-.|++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5789999999999999999998888877776654
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.011 Score=54.21 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
.++.|.|+|||||||++..++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999998763
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.011 Score=54.22 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVI 79 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~ 79 (366)
..+++|.|++||||||++..++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999987
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.013 Score=49.28 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
.++|+|++|+|||||+..++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999998865
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.01 Score=57.60 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=25.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
...++.|+|+|||||||++..++..+ + ..+++.+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~----~-~~~i~~D 290 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA----G-YVHVNRD 290 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG----T-CEECCGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc----C-cEEEccc
Confidence 46899999999999999999886533 2 3556543
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.12 E-value=0.011 Score=55.22 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.++.|+||+|||||||+..++..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 489999999999999999997755
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.048 Score=57.16 Aligned_cols=92 Identities=14% Similarity=0.074 Sum_probs=49.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEeCCCCCCHH----HHhhcccccCcc-e-------ec----
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALDPS----LAETIGVKTENL-L-------LA---- 116 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~---gg~vl~id~e~~~~~~----~~~~ig~~~~~~-~-------~~---- 116 (366)
..|+.+.|+||+||||||++.+++...... +..++++......-.. +++.++...... . ..
T Consensus 107 ~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~ 186 (773)
T 2xau_A 107 QNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKT 186 (773)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTC
T ss_pred hCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCC
Confidence 357899999999999999777775544322 3446665432111111 122222211100 0 00
Q ss_pred --CCCCHHHHHHHHHHHHhcCCceEEEEecccc
Q 017792 117 --QPDCGEQALSLVDTLIRSGSVDVVVVDSVAA 147 (366)
Q Consensus 117 --~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~ 147 (366)
...|...++..+.....-.+++++|+|....
T Consensus 187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHE 219 (773)
T ss_dssp SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGG
T ss_pred CEEEECHHHHHHHHhhCccccCCCEEEecCccc
Confidence 0124555555444333345789999999974
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.031 Score=60.95 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=60.1
Q ss_pred hHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh----cCCeEEEEeCCCCCCHH-------HHhhcccccC
Q 017792 43 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR----QGGYCVFIDAEHALDPS-------LAETIGVKTE 111 (366)
Q Consensus 43 ~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~----~gg~vl~id~e~~~~~~-------~~~~ig~~~~ 111 (366)
+..|...|. .+=..-+++.|+|+.|.|||||+.+++..... ....++|++........ +...++....
T Consensus 133 ~~~l~~~l~-~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (1249)
T 3sfz_A 133 VHAIQQKLW-KLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEES 211 (1249)
T ss_dssp HHHHHHHHH-TTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHHh-hccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcc
Confidence 345555663 12234468999999999999999988765422 23467888876543321 1222222111
Q ss_pred cceecCCCCHHHHHHHHHHHHhcC-CceEEEEeccc
Q 017792 112 NLLLAQPDCGEQALSLVDTLIRSG-SVDVVVVDSVA 146 (366)
Q Consensus 112 ~~~~~~~~~~e~~l~~~~~~~~~~-~~~lvviDsl~ 146 (366)
..-..+...+++...+...+... +.-++|+|.+.
T Consensus 212 -~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~ 246 (1249)
T 3sfz_A 212 -FSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW 246 (1249)
T ss_dssp -TCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCC
T ss_pred -cccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCC
Confidence 11123446677777777665432 35688999875
|
| >2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.021 Score=52.27 Aligned_cols=50 Identities=18% Similarity=0.168 Sum_probs=39.8
Q ss_pred HHHHHhhCCCCcCCCCEEEEEc---CCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 44 FALDIALGTGGLPKGRVVEIYG---PEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 44 ~~LD~~L~~GGi~~G~ii~I~G---~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
..+-+.+. ..++++.|++ ..|+||||++..++..+...|.+|+.+|.+..
T Consensus 24 ~~~~r~~~----~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q 76 (298)
T 2oze_A 24 EELRRILS----NKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQ 76 (298)
T ss_dssp HHHHHHHH----HHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred HHHHHHhc----CCCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 44445554 2467788886 89999999999999999888889999998754
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=95.04 E-value=0.014 Score=54.36 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
..++.|+||+|||||||+..++..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999987664
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.014 Score=54.36 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+.++.|+||+|||||||+..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999987654
|
| >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.02 Score=51.51 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=33.8
Q ss_pred CCCEEEEE-cCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 57 KGRVVEIY-GPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 57 ~G~ii~I~-G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
+++++.|+ +..|+||||++..++..+. .|.+|+++|.+..
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~ 66 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ 66 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 45677775 5589999999999999999 8889999998754
|
| >3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.031 Score=51.34 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=35.4
Q ss_pred CCCEEEEEcC-CCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 57 KGRVVEIYGP-EASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 57 ~G~ii~I~G~-~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
+++++.|+++ +|.||||++..++..+...|.+|++||.+..
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~ 132 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMR 132 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence 4567878776 8999999999999999988889999998754
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.98 E-value=0.013 Score=52.03 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+|.++.|.|..||||||++..++..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999988766
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.018 Score=50.65 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=25.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
.+|.++.|.|++||||||++..++..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999999887754
|
| >3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.029 Score=52.35 Aligned_cols=38 Identities=26% Similarity=0.265 Sum_probs=34.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
.++...|..|+||||++..++..+...|.+|+.+|.+.
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 67888899999999999999999998899999999875
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.012 Score=49.72 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988763
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.027 Score=56.99 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-CeEEEEeCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQG-GYCVFIDAE 95 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g-g~vl~id~e 95 (366)
.|.++.|.|.+||||||++..+...+...| ..+++++++
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 467899999999999999999998877655 556777743
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=94.84 E-value=0.0095 Score=57.84 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=24.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
++.|..++|+|+||||||||+..+++.
T Consensus 154 lk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 154 LMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp ECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 567899999999999999999988765
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.03 Score=48.76 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=26.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 93 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id 93 (366)
..+.|+|++|+|||||+..++...... ..+..++
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~ 72 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIA 72 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEE
Confidence 478899999999999999999876543 3444444
|
| >2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.03 Score=56.33 Aligned_cols=38 Identities=26% Similarity=0.361 Sum_probs=32.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
+.++.|.|.+||||||++..+...+...|..+.+++.+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D 409 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD 409 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch
Confidence 67899999999999999999998877666677777743
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=94.71 E-value=0.029 Score=51.35 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=25.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcC--CeEEEEeC
Q 017792 61 VEIYGPEASGKTTLALHVIAEAQRQG--GYCVFIDA 94 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~~~~g--g~vl~id~ 94 (366)
+.|+||+|+|||+++..++..+...+ ..+++++.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 89999999999999999998874322 23445554
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.68 E-value=0.02 Score=52.65 Aligned_cols=37 Identities=30% Similarity=0.233 Sum_probs=27.0
Q ss_pred HHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 44 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 44 ~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
..|-..+. .|-.+ .+.|+||+|+||||++..++..+.
T Consensus 35 ~~l~~~l~-~~~~~--~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 35 KRLKHYVK-TGSMP--HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp HHHHHHHH-HTCCC--EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCC--eEEEECcCCCCHHHHHHHHHHHhc
Confidence 34555554 33222 389999999999999999998864
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=94.65 E-value=0.012 Score=54.38 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
+.+++|+|+||+|||||+..+++.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 348999999999999999998753
|
| >1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=94.64 E-value=0.041 Score=49.21 Aligned_cols=38 Identities=24% Similarity=0.390 Sum_probs=32.2
Q ss_pred CEEEE-EcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 59 RVVEI-YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 59 ~ii~I-~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
.++.| .+..|+||||++..++..+...|.+|+++|.+.
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 34555 567899999999999999998888999999875
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.02 Score=46.80 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999988753
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.021 Score=46.42 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999988753
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.021 Score=46.44 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999888753
|
| >3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.044 Score=51.76 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=36.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
+...++.+.|..|+||||++..++..+...|.+|+.+|.+.
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 44567778899999999999999999998899999999875
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.021 Score=49.66 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+.++.|.|++||||||++..++..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999887654
|
| >1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.045 Score=55.38 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=36.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
..+++.+.|..|+||||++..++..+...|.+|+++|.+.
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4578999999999999999999999998898999999885
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=94.49 E-value=0.022 Score=46.30 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-+.++|++|+|||||+..++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999988754
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.014 Score=56.59 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 017792 61 VEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
++|+|+||+|||||++.+++...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 59999999999999999987654
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.024 Score=46.17 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999888753
|
| >1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A | Back alignment and structure |
|---|
Probab=94.37 E-value=0.043 Score=47.75 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=29.9
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 60 VVEIYGP-EASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 60 ii~I~G~-~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
++.|++. .|+||||++..++..+...|.+|++++.
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 4566664 8999999999999999988889999873
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.024 Score=47.84 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
+.-.++|+|++|+|||||+..++..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3447899999999999999988764
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.31 E-value=0.026 Score=46.13 Aligned_cols=21 Identities=24% Similarity=0.567 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~ 81 (366)
++|+|++|+|||||+..++..
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999988754
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.026 Score=54.31 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.++.|.||+|||||||+..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998766
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.047 Score=47.44 Aligned_cols=37 Identities=30% Similarity=0.365 Sum_probs=31.1
Q ss_pred EEEE-EcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 60 VVEI-YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 60 ii~I-~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
++.+ .+..|+||||++..++..+...| +|+++|.+..
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q 39 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPN 39 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCC
Confidence 3444 57789999999999999999888 9999998754
|
| >2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.051 Score=51.49 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=40.8
Q ss_pred HHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCeEEEEeCCCC
Q 017792 44 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEHA 97 (366)
Q Consensus 44 ~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~--~~gg~vl~id~e~~ 97 (366)
|.|+.++. . +.-.++...|..|.||||++..++..+. ..|.+|+.+|.+..
T Consensus 7 ~~l~~l~~-~--~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 7 PNLHSLIT-S--TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA 59 (354)
T ss_dssp SSCHHHHT-C--SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred ccHHHHhc-C--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 34666665 2 2235777889999999999999999998 88889999998864
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.017 Score=53.74 Aligned_cols=34 Identities=15% Similarity=-0.040 Sum_probs=26.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
|.-+.|+||||+|||+|+..++..+ +..+..+..
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~---~~~~~~i~~ 79 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTM---DLDFHRIQF 79 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh---CCCeEEEec
Confidence 3468999999999999999998765 334455554
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.027 Score=53.57 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
.+++|+|+||+||||++-.+..
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4999999999999999888775
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=94.27 E-value=0.026 Score=46.26 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|++|+|||||+..++.
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 78999999999999998874
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.027 Score=46.73 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999888753
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.027 Score=46.12 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.027 Score=46.18 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999888754
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.027 Score=46.61 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988653
|
| >2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.048 Score=49.03 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=34.3
Q ss_pred CCEEEEE-cCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC
Q 017792 58 GRVVEIY-GPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 98 (366)
Q Consensus 58 G~ii~I~-G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~ 98 (366)
+.++.|+ +..|+||||++..++..+...|.+|+++|.+...
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG 59 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 5567766 5578999999999999999888899999987544
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.028 Score=45.84 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
-++|+|++|+|||||+..+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999998875
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.031 Score=49.71 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
-.+|.|+|||||||++..++..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999988766
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.027 Score=46.41 Aligned_cols=21 Identities=33% Similarity=0.370 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
-++|+|++|+|||||+..++.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 378999999999999988864
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=94.15 E-value=0.014 Score=52.54 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=22.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.++.++.|.|++||||||++..++..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999998886554
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.11 E-value=0.028 Score=46.03 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
-++|+|++|+|||||+..++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999988865
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.031 Score=45.69 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988753
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.029 Score=45.98 Aligned_cols=20 Identities=35% Similarity=0.343 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|++|+|||||+..++.
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999988853
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=94.03 E-value=0.034 Score=45.31 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~ 81 (366)
++|+|++|+|||||+..++..
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999988754
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.028 Score=54.86 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=22.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
++++ -+.|+||||+||||+++.++..+.
T Consensus 48 ~~~~-~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 48 VTPK-NILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp CCCC-CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cCCc-eEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3443 378999999999999999988763
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.032 Score=46.22 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999988764
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.034 Score=45.60 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
.--++|+|++|+|||||+..++.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34589999999999999998864
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.035 Score=54.65 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
..-+.|+||||+|||+++..++..+..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999999999988753
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.035 Score=46.52 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988753
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.033 Score=45.97 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
-++|+|++|+|||||+..++.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998874
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.044 Score=54.54 Aligned_cols=40 Identities=10% Similarity=0.260 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhh-cC-CeEEEEeCCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQR-QG-GYCVFIDAEH 96 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~g-g~vl~id~e~ 96 (366)
.|.++.|.|.+||||||+++.++..+.. .+ ..+.|+|++.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 5678999999999999999999998875 44 3456777654
|
| >2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.077 Score=49.60 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=35.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
..++.+.|..|+||||++..++..+...|.+|+++|.+..
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 4578888999999999999999999988889999998754
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.043 Score=45.37 Aligned_cols=24 Identities=38% Similarity=0.369 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
+.-.++|+|++|+|||||+..++.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 455789999999999999988864
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.035 Score=46.68 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999998754
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.86 E-value=0.026 Score=51.14 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
.++|+|++|+|||||+..+++.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998654
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.83 E-value=0.035 Score=47.94 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
-++|+|++|+|||||+..++...
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999887643
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.031 Score=45.67 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVI 79 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~ 79 (366)
++|+|++|+|||||+..++
T Consensus 5 i~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEESTTSSHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 7899999999999998875
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=93.82 E-value=0.063 Score=54.79 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=29.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAE 95 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e 95 (366)
+.++.|.||||+||||++..++..+.. .+.++++...-
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~t 233 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 233 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 458999999999999999988887765 45666666543
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.037 Score=45.70 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999988753
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.036 Score=46.71 Aligned_cols=22 Identities=18% Similarity=0.447 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.029 Score=49.61 Aligned_cols=22 Identities=14% Similarity=0.351 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..+++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5889999999999999988753
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.037 Score=46.25 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999988753
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=0.038 Score=45.97 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5889999999999999888753
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.038 Score=46.64 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+..++..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4889999999999999888763
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 366 | ||||
| d1xp8a1 | 268 | c.37.1.11 (A:15-282) RecA protein, ATPase-domain { | 1e-110 | |
| d1mo6a1 | 269 | c.37.1.11 (A:1-269) RecA protein, ATPase-domain {M | 1e-109 | |
| d1u94a1 | 263 | c.37.1.11 (A:6-268) RecA protein, ATPase-domain {E | 1e-104 | |
| d1szpa2 | 251 | c.37.1.11 (A:145-395) DNA repair protein Rad51, ca | 9e-36 | |
| d1v5wa_ | 258 | c.37.1.11 (A:) Meiotic recombination protein DMC1/ | 2e-34 | |
| d1pzna2 | 254 | c.37.1.11 (A:96-349) DNA repair protein Rad51, cat | 4e-32 | |
| d2i1qa2 | 258 | c.37.1.11 (A:65-322) DNA repair protein Rad51, cat | 2e-30 | |
| d1n0wa_ | 242 | c.37.1.11 (A:) DNA repair protein Rad51, catalytic | 5e-27 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 1e-20 | |
| d1tf7a2 | 242 | c.37.1.11 (A:256-497) Circadian clock protein KaiC | 3e-17 | |
| d1mo6a2 | 60 | d.48.1.1 (A:270-329) RecA protein, C-terminal doma | 2e-16 | |
| d1tf7a1 | 242 | c.37.1.11 (A:14-255) Circadian clock protein KaiC | 4e-16 | |
| d1u94a2 | 60 | d.48.1.1 (A:269-328) RecA protein, C-terminal doma | 4e-15 | |
| d1xp8a2 | 59 | d.48.1.1 (A:283-341) RecA protein, C-terminal doma | 6e-14 | |
| d1cr2a_ | 277 | c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), | 1e-04 | |
| d1okkd2 | 207 | c.37.1.10 (D:97-303) GTPase domain of the signal r | 0.002 |
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Score = 322 bits (826), Expect = e-110
Identities = 149/267 (55%), Positives = 197/267 (73%), Gaps = 4/267 (1%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
+ A++ A+ QI +FGKGSIM LG + + V VVSTGS +LD+ALG GG+P+GR+ EI
Sbjct: 4 RSKAIETAMSQIEKAFGKGSIMKLG-AESKLDVQVVSTGSLSLDLALGVGGIPRGRITEI 62
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+ GKTTLAL ++A+AQ+ GG C FIDAEHALDP A +GV T+ LL++QPD GEQ
Sbjct: 63 YGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQ 122
Query: 124 ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL +++ L+RSG++DVVVVDSVAAL P+ E++G+MGD+ +QARLMSQALRKL+ LS
Sbjct: 123 ALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSK 182
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIG-LVKKGEETIGSQ 242
+ T IFINQVR K+ G E T GG ALKFYASVRL++++IG K G + + +
Sbjct: 183 TGTAAIFINQVREKIGV--MYGNPETTTGGRALKFYASVRLDVRKIGQPTKVGNDAVANT 240
Query: 243 IAVKIVKNKLAPPFKTAQFELEFGKGI 269
+ +K VKNK+A PFK + L +GKG
Sbjct: 241 VKIKTVKNKVAAPFKEVELALVYGKGF 267
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 318 bits (815), Expect = e-109
Identities = 153/272 (56%), Positives = 206/272 (75%), Gaps = 6/272 (2%)
Query: 1 MSK---KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPK 57
M++ ++ AL+ A+ QI S+GKGS+M LG + + V+ TGS ALD+ALG GGLP+
Sbjct: 1 MTQTPDREKALELAVAQIEKSYGKGSVMRLG-DEARQPISVIPTGSIALDVALGIGGLPR 59
Query: 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQ 117
GRV+EIYGPE+SGKTT+ALH +A AQ GG FIDAEHALDP A+ +GV T++LL++Q
Sbjct: 60 GRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQ 119
Query: 118 PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 177
PD GEQAL + D LIRSG++D+VV+DSVAALVP+ EL+GEMGD+H+ +QARLMSQALRK+
Sbjct: 120 PDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKM 179
Query: 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEE 237
+ +L+ S T IFINQ+R K+ G E T GG ALKFYASVR++++R+ +K G
Sbjct: 180 TGALNNSGTTAIFINQLRDKIG--VMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTN 237
Query: 238 TIGSQIAVKIVKNKLAPPFKTAQFELEFGKGI 269
+G++ VK+VKNK PFK A+F++ +GKGI
Sbjct: 238 AVGNRTRVKVVKNKCLAPFKQAEFDILYGKGI 269
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Score = 306 bits (785), Expect = e-104
Identities = 165/266 (62%), Positives = 200/266 (75%), Gaps = 3/266 (1%)
Query: 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 63
K AL AL QI FGKGSIM LG V +STGS +LDIALG GGLP GR+VEI
Sbjct: 1 KQKALAAALGQIEKQFGKGSIMRLG-EDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 59
Query: 64 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 123
YGPE+SGKTTL L VIA AQR+G C FIDAEHALDP A +GV +NLL +QPD GEQ
Sbjct: 60 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 119
Query: 124 ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 183
AL + D L RSG+VDV+VVDSVAAL PK E++GE+GD+HM + AR+MSQA+RKL+ +L
Sbjct: 120 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 179
Query: 184 SQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243
S T+LIFINQ+R K+ G E T GGNALKFYASVRL+I+RIG VK+GE +GS+
Sbjct: 180 SNTLLIFINQIRMKIG--VMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 237
Query: 244 AVKIVKNKLAPPFKTAQFELEFGKGI 269
VK+VKNK+A PFK A+F++ +G+GI
Sbjct: 238 RVKVVKNKIAAPFKQAEFQILYGEGI 263
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 129 bits (323), Expect = 9e-36
Identities = 56/252 (22%), Positives = 99/252 (39%), Gaps = 34/252 (13%)
Query: 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA------QRQGGYC 89
+ ++TGS LD LG GG+ G + E++G +GK+ L + G C
Sbjct: 13 LICLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKC 71
Query: 90 VFIDAEHALDPSL----AETIGVKT----ENLLLAQPDCGEQALSLVDT---LIRSGSVD 138
++ID E P A+ G+ N+ A+ + L L+D ++
Sbjct: 72 LYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFS 131
Query: 139 VVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKL 198
++VVDSV AL G ++ + +++ +R L ++ NQV A++
Sbjct: 132 LIVVDSVMALYR----TDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQV 187
Query: 199 STFG-FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFK 257
F + GGN + ++ RL K+ G Q K+V + P +
Sbjct: 188 DGGMAFNPDPKKPTGGNIMAHSSTTRLGFKKGK---------GCQRLCKVVDSPCLPEAE 238
Query: 258 TAQFELEFGKGI 269
F + G+
Sbjct: 239 -CVFAIY-EDGV 248
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Score = 125 bits (314), Expect = 2e-34
Identities = 57/257 (22%), Positives = 101/257 (39%), Gaps = 36/257 (14%)
Query: 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG------ 87
+ V ++TGS D LG GG+ + E +G +GKT L+ + AQ G
Sbjct: 14 KMVFHITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGG 72
Query: 88 YCVFIDAEHALDPSLAETIGVK--------TENLLLAQPDCGEQALSLVDTLI-----RS 134
+FID E+ P I + +N+L A+ E + L+D + +
Sbjct: 73 KIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEA 132
Query: 135 GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 194
G ++++DS+ AL G +A + + ++Q L +L + NQ+
Sbjct: 133 GIFKLLIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 188
Query: 195 RAKL-STFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLA 253
A +T F + GG+ L ++ R+++++ G KI +
Sbjct: 189 TADPGATMTFQADPKKPIGGHILAHASTTRISLRKGR---------GELRIAKIYDSP-E 238
Query: 254 PPFKTAQFELEFGKGIS 270
P A F + GI
Sbjct: 239 MPENEATFAIT-AGGIG 254
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 119 bits (297), Expect = 4e-32
Identities = 56/256 (21%), Positives = 102/256 (39%), Gaps = 40/256 (15%)
Query: 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIA------EAQRQGGYC 89
+ +STGS +LD LG GG+ + E++G SGKT LA + E G
Sbjct: 15 IGRISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSV 73
Query: 90 VFIDAEHALDPSLAETIGVKT--------ENLLLAQPDCGEQALSLV--------DTLIR 133
++ID E+ P I +++ +A+ + LV + L
Sbjct: 74 IWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNT 133
Query: 134 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ 193
V +++VDS+ + +G +A + + +++ L L +L + NQ
Sbjct: 134 DRPVKLLIVDSLTSHFR----SEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQ 189
Query: 194 VRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLA 253
V+A+ F G GG+ L A++R+ +++ G + +++
Sbjct: 190 VQARPD--AFFGDPTRPIGGHILAHSATLRVYLRKGK---------GGKRIARLIDAPHL 238
Query: 254 PPFKTAQFELEFGKGI 269
P A F + KGI
Sbjct: 239 PE-GEAVFSIT-EKGI 252
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Score = 114 bits (286), Expect = 2e-30
Identities = 51/258 (19%), Positives = 85/258 (32%), Gaps = 38/258 (14%)
Query: 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR----------- 84
V +ST S LD LG GGL V E G SGKT + Q
Sbjct: 13 VWKLSTSSSELDSVLG-GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAV 71
Query: 85 -----QGGYCVFIDAEHALDPSLAETIGVK--------TENLLLAQPDCGEQALSLVDTL 131
V+ID E P + +N +A+ + + + +
Sbjct: 72 SKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKI 131
Query: 132 IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFI 191
+ V + + G +A + + + + + L+ L +++
Sbjct: 132 EDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVT 191
Query: 192 NQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNK 251
NQV AK F G E GG+ + A+ R +++ G + K+ +
Sbjct: 192 NQVSAKPDA--FFGMAEQAIGGHIVGHAATFRFFVRKGK---------GDKRVAKLYDSP 240
Query: 252 LAPPFKTAQFELEFGKGI 269
P A F + KGI
Sbjct: 241 HLPD-AEAIFRIT-EKGI 256
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 105 bits (261), Expect = 5e-27
Identities = 45/253 (17%), Positives = 82/253 (32%), Gaps = 34/253 (13%)
Query: 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95
+ ++TGS LD L GG+ G + E++G +GKT + + Q
Sbjct: 2 IIQITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKA 60
Query: 96 HALDPSLA-----------------ETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVD 138
+D + D Q L ++
Sbjct: 61 MYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYA 120
Query: 139 VVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKL 198
+++VDS AL G ++ + +++ LR L ++ NQV A++
Sbjct: 121 LLIVDSATALYR----TDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV 176
Query: 199 STFG-FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFK 257
F + GGN + ++ RL +++ G KI + P
Sbjct: 177 DGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR---------GETRICKIYDSP-CLPEA 226
Query: 258 TAQFELEFGKGIS 270
A F + G+
Sbjct: 227 EAMFAIN-ADGVG 238
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 88.6 bits (218), Expect = 1e-20
Identities = 34/249 (13%), Positives = 74/249 (29%), Gaps = 32/249 (12%)
Query: 52 TGGLPKGRVVEIYGPEASGKTTLALHVIA----------EAQRQGGYCVFIDAEH----- 96
+ G V + P +GK+ LAL + A + G +++ AE
Sbjct: 23 LPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAI 82
Query: 97 -----ALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPK 151
AL L+ + LL QP G + + +
Sbjct: 83 HHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLR 142
Query: 152 GELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTC 211
E + M+Q + ++ + + ++F++ + G G + +
Sbjct: 143 RFHIEEENASGP------MAQVIGRMEAIAADTGCSIVFLHHASKGAAMMGAGDQQQASR 196
Query: 212 GGNALKFYASVRLNIKRIG-----LVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFG 266
G + L + + + ++ + + K PF F G
Sbjct: 197 GSSVLVDNIRWQSYLSSMTSAEAEEWGVDDDQRRFFVRFGVSKANYGAPFADRWFRRHDG 256
Query: 267 KGISRESEI 275
G+ + + +
Sbjct: 257 -GVLKPAVL 264
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Score = 78.1 bits (191), Expect = 3e-17
Identities = 32/199 (16%), Positives = 56/199 (28%), Gaps = 7/199 (3%)
Query: 39 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 98
VS+G LD G GG K ++ G +GKT L + A + E +
Sbjct: 8 VSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESR 66
Query: 99 DPSL--AETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDG 156
L A + G+ E + A L ++ + P
Sbjct: 67 AQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQ---IIKSEINDFKPARIAID 123
Query: 157 EMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNAL 216
+ + Q + ++ + +F N + T +
Sbjct: 124 SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTII 183
Query: 217 KF-YASVRLNIKRIGLVKK 234
Y +R + R V K
Sbjct: 184 LLQYVEIRGEMSRAINVFK 202
|
| >d1mo6a2 d.48.1.1 (A:270-329) RecA protein, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 60 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Anti-LPS factor/recA domain superfamily: RecA protein, C-terminal domain family: RecA protein, C-terminal domain domain: RecA protein, C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 70.4 bits (173), Expect = 2e-16
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 270 SRESEIIDLALKHKFASKAGAMFTYNDRNFR-GKEAFKQFLVENESVREELVIKLREKL 327
SRE +ID+ + K+GA FTY GKE + FLVEN V +E+ K++EKL
Sbjct: 1 SREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENARNFLVENADVADEIEKKIKEKL 59
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Score = 75.0 bits (183), Expect = 4e-16
Identities = 35/240 (14%), Positives = 73/240 (30%), Gaps = 17/240 (7%)
Query: 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY-CVFIDA 94
+ + T D GGLP GR + G +GKT ++ + + VF+
Sbjct: 5 IAKMRTMIEGFDDISH-GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 63
Query: 95 EHALDPSL--AETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDV-VVVDSVAALVPK 151
E + A + G L+ A + G D+ +++ + + K
Sbjct: 64 EETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQK 123
Query: 152 GELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTC 211
D+ ++ + + + +F R K TE
Sbjct: 124 YRARRVSIDSVTSVFQQYDASS----------VVRRELFRLVARLKQIGATTVMTTERIE 173
Query: 212 GGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAP-PFKTAQFELEFGKGIS 270
+ Y + +++ E + ++I+K + F + GI+
Sbjct: 174 EYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTIT-DHGIN 232
|
| >d1u94a2 d.48.1.1 (A:269-328) RecA protein, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 60 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Anti-LPS factor/recA domain superfamily: RecA protein, C-terminal domain family: RecA protein, C-terminal domain domain: RecA protein, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 66.9 bits (164), Expect = 4e-15
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 270 SRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVIKLREKLV 328
+ E++DL +K K KAGA ++Y +GK +L +N +E+ K+RE L+
Sbjct: 1 NFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL 60
|
| >d1xp8a2 d.48.1.1 (A:283-341) RecA protein, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Length = 59 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Anti-LPS factor/recA domain superfamily: RecA protein, C-terminal domain family: RecA protein, C-terminal domain domain: RecA protein, C-terminal domain species: Deinococcus radiodurans [TaxId: 1299]
Score = 63.8 bits (156), Expect = 6e-14
Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 271 RESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVIKLREKL 327
+ S+++ LA KAG+ ++Y D +GKE ++ E + +E+ ++ +
Sbjct: 1 QLSDLVGLAADMDIIKKAGSFYSYGDERIGQGKEKTIAYIAERPEMEQEIRDRVMAAI 58
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Score = 40.8 bits (94), Expect = 1e-04
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 32 TPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 91
+ V ++ +G ++ T G G V+ + GK+T + G V
Sbjct: 11 SEESVGLLFSGCTGINDK--TLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG 68
Query: 92 I 92
+
Sbjct: 69 L 69
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Score = 36.6 bits (84), Expect = 0.002
Identities = 34/182 (18%), Positives = 60/182 (32%), Gaps = 7/182 (3%)
Query: 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI--DAEHALDPSLAETIGVKTENL 113
PKGRVV + G GKTT + Q G +F D A + G +
Sbjct: 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIP 63
Query: 114 LLAQPDCGEQALSLVD--TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS 171
++ P+ + A D +++ D++ VD+ L K L E+ A+
Sbjct: 64 VIQGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPE 123
Query: 172 QALRKL---SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKR 228
+ + L+ GG + ++++ IK
Sbjct: 124 EPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKF 183
Query: 229 IG 230
+G
Sbjct: 184 VG 185
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 366 | |||
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 100.0 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 100.0 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 100.0 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 99.93 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 99.93 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 99.93 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 99.92 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 99.91 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 99.9 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 99.9 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 99.86 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 99.77 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.72 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.72 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.72 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.71 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.71 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.7 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.7 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.67 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.67 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.66 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.65 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.63 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.62 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.61 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.58 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.57 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.49 | |
| d1u94a2 | 60 | RecA protein, C-terminal domain {Escherichia coli | 99.49 | |
| d1mo6a2 | 60 | RecA protein, C-terminal domain {Mycobacterium tub | 99.49 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.48 | |
| d1xp8a2 | 59 | RecA protein, C-terminal domain {Deinococcus radio | 99.46 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.31 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.27 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.53 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 98.36 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.28 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 98.23 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.18 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 98.12 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 98.12 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.07 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 97.96 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.92 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.9 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 97.81 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.72 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.71 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 97.69 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 97.67 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 97.65 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.63 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 97.57 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.54 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.53 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 97.49 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 97.48 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 97.48 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.43 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.4 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.39 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.36 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.3 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 97.29 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.29 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.29 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 97.28 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.25 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.19 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.19 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.18 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.1 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 97.1 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.07 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.06 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 97.06 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 97.05 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 97.05 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 97.05 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.04 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 97.02 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.02 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.98 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 96.95 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.94 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.94 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 96.93 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.9 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.84 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 96.83 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.82 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.81 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 96.81 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 96.79 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 96.77 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.73 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.73 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.72 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.71 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 96.69 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.67 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.66 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.66 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.63 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.62 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.59 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.58 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.57 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 96.56 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.55 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.53 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.44 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.43 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.42 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.41 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 96.38 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.38 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.38 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.38 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 96.34 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.32 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.31 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 96.29 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.27 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 96.24 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.24 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 96.2 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.12 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 96.12 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 96.07 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 96.06 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 96.04 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.03 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.0 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 95.93 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.9 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.87 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.86 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.83 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 95.78 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 95.77 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.77 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.76 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.74 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 95.61 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 95.56 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 95.5 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 95.48 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 95.46 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.45 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 95.41 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 95.39 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.38 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 95.29 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 95.25 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.25 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.24 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 95.17 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.04 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.01 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.0 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 94.95 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 94.94 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.93 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.93 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.88 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.87 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.87 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.86 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 94.83 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.72 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.71 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.68 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.64 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.63 | |
| d1ofux_ | 119 | Hypothetical protein PA3008 {Pseudomonas aeruginos | 94.56 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.54 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 94.53 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 94.5 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.49 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.48 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.46 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.44 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.41 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.36 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 94.36 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.26 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.26 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 94.23 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 94.21 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.21 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 94.2 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.15 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.12 | |
| d1g5ta_ | 157 | ATP:corrinoid adenosyltransferase CobA {Salmonella | 94.08 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 94.07 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 94.06 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.01 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 93.98 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 93.94 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.92 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.9 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.87 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 93.85 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.83 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.82 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 93.81 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.75 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.75 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.75 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.75 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 93.74 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.73 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 93.66 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.64 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 93.63 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 93.56 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.55 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 93.52 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 93.49 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 93.45 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 93.44 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.44 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 93.44 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 93.38 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 93.35 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.33 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 93.29 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 93.25 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.2 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.05 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 93.04 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.03 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.01 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 93.0 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.99 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.86 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.83 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.78 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.75 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.58 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.33 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 92.28 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 92.21 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 92.17 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 92.12 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.08 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.02 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 91.92 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.62 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 91.57 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 91.57 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 91.52 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 91.35 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.08 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 90.97 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 90.9 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 88.97 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 88.77 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 88.31 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.9 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.33 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 86.99 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 86.92 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 86.64 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 86.08 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.52 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 85.12 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 84.41 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 84.22 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 83.8 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 83.64 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 83.06 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 82.92 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 80.4 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 80.17 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 80.1 |
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00 E-value=1e-49 Score=366.47 Aligned_cols=267 Identities=56% Similarity=0.920 Sum_probs=225.3
Q ss_pred CchHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHH
Q 017792 1 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 1 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
.++|+++|+.++++|+|+||++++|.++.. ...++++||||++.||.+||.||+|.|++++|+||+||||||||++++.
T Consensus 1 ~~~~~~~~~~~~~~i~k~~g~~~~~~~~~~-~~~~~~~i~TGs~~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 1 AKERSKAIETAMSQIEKAFGKGSIMKLGAE-SKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTSSCCTTSC-CCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhCCcceEECCCc-CCCCCCeEcCCCHHHHHHhcCCCccCceEEEEecCCccchHHHHHHHHH
Confidence 367999999999999999999999999875 5678999999999999999669999999999999999999999999999
Q ss_pred HHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccch
Q 017792 81 EAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGD 160 (366)
Q Consensus 81 ~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~ 160 (366)
.+++.++.|+|+|+|..+++.+++++|++++++.+.++.+.|+.++.+..++....++++||||+.+++|+.+++++.++
T Consensus 80 ~aqk~g~~v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~~~~E~~~~~~~~l~~~~~~~liIiDSi~al~~r~e~~~~~~~ 159 (268)
T d1xp8a1 80 QAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGD 159 (268)
T ss_dssp HHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC------
T ss_pred HHHhCCCEEEEEECCccCCHHHHHHhCCCchhEEEEcCCCHHHHHHHHHHHHhcCCCcEEEEecccccccHHHHcccccc
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999988777
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEe-ceeecCcccc
Q 017792 161 AHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRI-GLVKKGEETI 239 (366)
Q Consensus 161 ~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~-~~~~~~~~~~ 239 (366)
.+.+.++|.+..++++|...+.++++++|+|||++.+++. ++++| .++.||+++.|+++.||.|++. +..+++++..
T Consensus 160 ~~~~~~a~~l~~~lr~l~~~~~~~~~~vi~tNQv~~~~g~-~~g~~-~~~~GG~al~~~ss~rl~l~k~~~~~k~~~~~i 237 (268)
T d1xp8a1 160 SLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGV-MYGNP-ETTTGGRALKFYASVRLDVRKIGQPTKVGNDAV 237 (268)
T ss_dssp --CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC-----------------CHHHHHHHCSEEEEEEEESCCC------C
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhcCCeEEEEeEEeecccc-ccCcc-eeecccchhhhceeEEEEEEecCcccccCCceE
Confidence 7777889999999999999999999999999999998775 24444 7889999999999999999876 3455667788
Q ss_pred ccEEEEEEEecCCCCCCCeeEEEEEeCCCCC
Q 017792 240 GSQIAVKIVKNKLAPPFKTAQFELEFGKGIS 270 (366)
Q Consensus 240 g~~~~l~v~K~r~~~~~~~~~~~i~~~~Gi~ 270 (366)
|++++++++|||++||++.+.|.|.|+.||+
T Consensus 238 G~~v~~kv~Knr~~~p~~~~~~~i~~~~GiD 268 (268)
T d1xp8a1 238 ANTVKIKTVKNKVAAPFKEVELALVYGKGFD 268 (268)
T ss_dssp EEEEEEEEEEESSSCCCCEEEEEEETTTEEC
T ss_pred EEEEEEEEEECCcCCCCCEEEEEEecCCCCC
Confidence 9999999999999999999999999999974
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=2.6e-49 Score=363.37 Aligned_cols=265 Identities=58% Similarity=0.962 Sum_probs=233.4
Q ss_pred chHHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 2 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
++|.++|+.|+++|+|+||++++|.+++. ....+++||||++.||.+||.||+|.|++++|+||+|+||||||++++..
T Consensus 5 ~~~~k~~~~~~~~i~k~~g~~~i~~~~~~-~~~~~~~i~TG~~~lD~~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 5 PDREKALELAVAQIEKSYGKGSVMRLGDE-ARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp STHHHHHHHHHHHHHHHHCTTSSCCTTCC-CCCCSCCBCCSCHHHHHHTSSSSBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCCcceEECCCc-cCCccceEccCCHHHHHhhccCCcccceeEEEecCCCcHHHHHHHHHHHH
Confidence 46889999999999999999999999974 56778999999999999997799999999999999999999999999999
Q ss_pred HhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchh
Q 017792 82 AQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDA 161 (366)
Q Consensus 82 ~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~ 161 (366)
++..++.|+|||+|+.+++.+++++|+++++++++++.+.|+.++.++.++....++++||||+.+++|+.+++++.++.
T Consensus 84 ~q~~g~~~vyIDtE~~~~~e~a~~~GvD~d~il~~~~~~~E~~~~~~~~l~~~~~~~liIiDSi~al~~~~E~e~~~~~~ 163 (269)
T d1mo6a1 84 AQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDS 163 (269)
T ss_dssp HHHTTCEEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTTCEEEEEEECSTTCCCHHHHC------
T ss_pred HhcCCCEEEEEECCccCCHHHHHHhCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEEEEecccccccHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888998887777
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCcccccc
Q 017792 162 HMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGS 241 (366)
Q Consensus 162 ~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~ 241 (366)
+.+.++|.+..++++|...+.++++++|+|||++.+++. .|++| .++.||+++.|+++.||.|.+.+.++++++..|+
T Consensus 164 ~~~~~a~~l~~~l~~l~~~~~~~~~~vi~~NQv~~~~~~-~~g~~-~~~~GG~al~~~ss~rl~l~k~~~~kdg~~~iG~ 241 (269)
T d1mo6a1 164 HVGLQARLMSQALRKMTGALNNSGTTAIFINQLRDKIGV-MFGSP-ETTTGGKALKFYASVRMDVRRVETLKDGTNAVGN 241 (269)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECC---------------CTTHHHHHHHCSEEEEEEEEECCBCSSSBCEE
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcCchhhhhheeeccCcc-ccCCc-eecccccceeeeeeEEEEEEecceeccCCceEEE
Confidence 777889999999999999999999999999999998875 25555 6889999999999999999998888899999999
Q ss_pred EEEEEEEecCCCCCCCeeEEEEEeCCCC
Q 017792 242 QIAVKIVKNKLAPPFKTAQFELEFGKGI 269 (366)
Q Consensus 242 ~~~l~v~K~r~~~~~~~~~~~i~~~~Gi 269 (366)
++.++++|||++||++.+.|.|+|+.||
T Consensus 242 ~~~~kv~Knr~~~p~~~a~f~I~~~~GI 269 (269)
T d1mo6a1 242 RTRVKVVKNKCLAPFKQAEFDILYGKGI 269 (269)
T ss_dssp EEEEEEEEESSSCSCEEEEEEEETTTEE
T ss_pred EEEEEEEECCCCCCCCEEEEEEEeCCcC
Confidence 9999999999999999999999999885
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.7e-49 Score=362.31 Aligned_cols=263 Identities=63% Similarity=1.002 Sum_probs=229.8
Q ss_pred HHHHHHHHHHHHHHhcCCCceEeccCCCCCCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 4 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
|++.|+.++++|+|+||++++|.+++. ...++++||||++.||.+||.||+|+|.+++|+||||+||||||++++..++
T Consensus 1 ~~~~~~~~~~~i~k~~g~~~~~~~~~~-~~~~~~~isTG~~~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q 79 (263)
T d1u94a1 1 KQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 79 (263)
T ss_dssp CHHHHHHHHHHHHHHHCTTSSCCTTCC-CBCCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhhCCcceEECCcc-cCCCCCeEccCCHHHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 567999999999999999999999985 5567899999999999999559999999999999999999999999999999
Q ss_pred hcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhH
Q 017792 84 RQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHM 163 (366)
Q Consensus 84 ~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~ 163 (366)
+.++.|+|+|+|+.+++.+++++|++++++++.++.+.|+.++.+..+.+...++++||||+.+++++.+++++.++.+.
T Consensus 80 ~~g~~~vyidtE~~~~~~~a~~~Gvd~d~v~~~~~~~~E~~~~~i~~l~~~~~~~liViDSi~al~~~~e~~~~~~~~~~ 159 (263)
T d1u94a1 80 REGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHM 159 (263)
T ss_dssp HTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------
T ss_pred cCCCEEEEEccccccCHHHHHHhCCCHHHEEEecCCCHHHHHHHHHHHHhcCCCCEEEEECccccccchhcccccccchH
Confidence 99999999999999999999999999999999999999999999999998889999999999999988888877777777
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEE
Q 017792 164 AMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQI 243 (366)
Q Consensus 164 ~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~ 243 (366)
+..++.+.+.+++|...+.++++++|++||++.+++. ++++| .+++||++|.|+++.||.|++....+++++..|+++
T Consensus 160 ~~~a~~l~~~~~~l~~~~~~~~~~vi~~NQv~~~~~~-~~g~~-~~~~GG~al~~~~~~rl~l~k~~~~k~g~~~iG~~~ 237 (263)
T d1u94a1 160 GLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV-MFGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 237 (263)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC----------------CTTCSHHHHHCSEEEEEEEEEEEESSSSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhhhccCceEEEEEEEEecccc-ccCCC-ccccccchhheeeEEEEEEEeccccccCCceeeeEE
Confidence 8889999999999999999999999999999988775 25555 688999999999999999999888888888889998
Q ss_pred EEEEEecCCCCCCCeeEEEEEeCCCC
Q 017792 244 AVKIVKNKLAPPFKTAQFELEFGKGI 269 (366)
Q Consensus 244 ~l~v~K~r~~~~~~~~~~~i~~~~Gi 269 (366)
+++++|||++||++.+.|.|+|+.||
T Consensus 238 r~~v~Knr~~~p~~~~~f~i~~~~GI 263 (263)
T d1u94a1 238 RVKVVKNKIAAPFKQAEFQILYGEGI 263 (263)
T ss_dssp EEEEEEESSBCSCCEEEEEEETTTEE
T ss_pred EEEEEeCCCCCCCCEEEEEEEcCCCC
Confidence 99999999999999999999999885
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.93 E-value=1.4e-25 Score=202.54 Aligned_cols=219 Identities=26% Similarity=0.419 Sum_probs=148.8
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCeEEEEeCCCCCCHHHHhhc-
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDPSLAETI- 106 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~------gg~vl~id~e~~~~~~~~~~i- 106 (366)
..+++||||++.||.+|+ ||+|+|++++|+|+||||||||+++++...+.. ++.++|++.+...+....+..
T Consensus 13 ~~i~ri~TGi~~LD~ll~-GGlp~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (254)
T d1pzna2 13 ATIGRISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIA 91 (254)
T ss_dssp HTCCEECCSCHHHHHHHT-SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHH
T ss_pred cCCCeECCCCHHHHHhhc-CCccCCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchhHHHHHHHHH
Confidence 357799999999999999 999999999999999999999999999988643 578999999988876544432
Q ss_pred ---ccccC----cceecCCCCHHHHHHHHHH--------HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHH
Q 017792 107 ---GVKTE----NLLLAQPDCGEQALSLVDT--------LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS 171 (366)
Q Consensus 107 ---g~~~~----~~~~~~~~~~e~~l~~~~~--------~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~ 171 (366)
+++++ ...+............+.. ......+.++++|++..++. .... .........+.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viDs~~~~~~-~~~~---~~~~~~~~~~~~~ 167 (254)
T d1pzna2 92 QNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR-SEYI---GRGALAERQQKLA 167 (254)
T ss_dssp HTTTCCHHHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHH-HHCC---STTTHHHHHHHHH
T ss_pred HhcCCChHHhhhhhhhhhhccchhHHHHHHhhhhhhHHHHhhccCceeEeecchhheee-hhhc---ccchhhhhHHHHH
Confidence 33322 1222233333333222211 22345678999999988762 2221 1222334455566
Q ss_pred HHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecC
Q 017792 172 QALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNK 251 (366)
Q Consensus 172 ~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r 251 (366)
..+..+.......++++++++|.+..... .......+.+|..|+|.+|.++.+++.+ +.++.+.|.|+|
T Consensus 168 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~l~~~~---------~~~R~~~v~K~R 236 (254)
T d1pzna2 168 KHLADLHRLANLYDIAVFVTNQVQARPDA--FFGDPTRPIGGHILAHSATLRVYLRKGK---------GGKRIARLIDAP 236 (254)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECC-----------------CCCCCTTCSEEEEEEECT---------TSEEEEEESCSS
T ss_pred HHHHHHHHHhhccceEEEecceEeeccCc--ccCCceeecCceeehhhceEEEEEEecC---------CCeEEEEEEECC
Confidence 66777776667789999999999887543 2233356789999999999999998752 234579999999
Q ss_pred CCCCCCeeEEEEEeCCCCC
Q 017792 252 LAPPFKTAQFELEFGKGIS 270 (366)
Q Consensus 252 ~~~~~~~~~~~i~~~~Gi~ 270 (366)
..|++ ..+|.|+ +.||.
T Consensus 237 ~~~~~-~~~f~It-~~Gi~ 253 (254)
T d1pzna2 237 HLPEG-EAVFSIT-EKGIE 253 (254)
T ss_dssp SSCCS-EEEEEEE-TTEEE
T ss_pred CCCCe-EEEEEEC-CCCcc
Confidence 88775 5789998 88874
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.6e-25 Score=202.01 Aligned_cols=222 Identities=26% Similarity=0.417 Sum_probs=152.0
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCeEEEEeCCCCCCHHHHhhc-
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDPSLAETI- 106 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~------gg~vl~id~e~~~~~~~~~~i- 106 (366)
..+.+||||++.||.+|+ ||+|+|++++|+|+||+|||+|+++++.+.+.. ...++|++.+..+...+...+
T Consensus 14 ~~~~ri~TGi~~LD~~lg-GGip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (258)
T d1v5wa_ 14 KMVFHITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIA 92 (258)
T ss_dssp GGCCCBCCSCHHHHHHTT-SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHH
T ss_pred cCCceecCCCHHHHHhhc-CCCcCCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHHHHHHHHH
Confidence 356799999999999999 999999999999999999999999999887643 236899999988875444333
Q ss_pred ---cccc----CcceecCCCCHHHHHHHHHHH-----HhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHH
Q 017792 107 ---GVKT----ENLLLAQPDCGEQALSLVDTL-----IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQAL 174 (366)
Q Consensus 107 ---g~~~----~~~~~~~~~~~e~~l~~~~~~-----~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L 174 (366)
+.+. .++.+..+.+.++.+..+..+ .+...++++++|++.++.. ..... ..........+...+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vid~~~~~~~-~~~~~---~~~~~~~~~~l~~~~ 168 (258)
T d1v5wa_ 93 DRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR-VDFSG---RGELAERQQKLAQML 168 (258)
T ss_dssp HHTTCCHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH-HHCCG---GGCHHHHHHHHHHHH
T ss_pred hhhcccchhhhhcccccccCcHHHHHHHHHHHHHHhhhhccCceEEEeeehhhhhh-ccccC---CcchhHHHHHHHHHH
Confidence 2221 355555666655555444332 2334578999999998862 22221 122334455666777
Q ss_pred HHHHHHhhhcCcEEEEEecCCccccccc-CCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCC
Q 017792 175 RKLSHSLSLSQTILIFINQVRAKLSTFG-FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLA 253 (366)
Q Consensus 175 ~~L~~~l~~~~~tVI~i~h~~~~~~~~~-~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~ 253 (366)
..|...+.++++++++++|.+...+... +......+.+|..|.|++|.++.+++.+ +..+.+++.|+|..
T Consensus 169 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~~~---------~~~R~l~i~K~r~~ 239 (258)
T d1v5wa_ 169 SRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGR---------GELRIAKIYDSPEM 239 (258)
T ss_dssp HHHHHHHHHHTCEEEEEECC-------------------CCTTTTSSSEEEEEEESS---------TTEEEEEEEECTTC
T ss_pred HHHHHHHHhcCCEEEEeeeEeecccccccccCCceeecccceehheeEEEEEEEEcC---------CCEEEEEEEeCCCC
Confidence 7888788889999999999988765432 3333356889999999999999998643 23447899999987
Q ss_pred CCCCeeEEEEEeCCCCCc
Q 017792 254 PPFKTAQFELEFGKGISR 271 (366)
Q Consensus 254 ~~~~~~~~~i~~~~Gi~~ 271 (366)
++ ..+.|.|+ +.||..
T Consensus 240 ~~-~~~~F~It-~~GI~~ 255 (258)
T d1v5wa_ 240 PE-NEATFAIT-AGGIGD 255 (258)
T ss_dssp CS-SCEEEEEE-TTEEEE
T ss_pred CC-cEEEEEEc-CCCccc
Confidence 65 45789998 888754
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=7e-26 Score=203.16 Aligned_cols=221 Identities=26% Similarity=0.433 Sum_probs=152.8
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEeCCCCCCHHH----H
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDPSL----A 103 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~------~gg~vl~id~e~~~~~~~----~ 103 (366)
..+.+||||++.||.+|+ ||+|+|++++|+|+||||||||+++++..++. .++.++|++.+......+ .
T Consensus 11 ~~~~~i~TGi~~LD~ll~-GGi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 89 (251)
T d1szpa2 11 SELICLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIA 89 (251)
T ss_dssp HSSCEECCSCHHHHHHHT-SSEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCGGGGHHHH
T ss_pred cCCCeecCCCHHHHhhhC-CCCcCCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHHHHHHHHHH
Confidence 357899999999999999 99999999999999999999999999887653 256899999998877533 2
Q ss_pred hhcccccC----cceecCC---CCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHH
Q 017792 104 ETIGVKTE----NLLLAQP---DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 176 (366)
Q Consensus 104 ~~ig~~~~----~~~~~~~---~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~ 176 (366)
..++++.. ++.+... ......+......+......++++|++..+.. ...... +. .....+.+...++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~-~~~~~~-~~--~~~~~~~~~~~~~~ 165 (251)
T d1szpa2 90 QRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR-TDFSGR-GE--LSARQMHLAKFMRA 165 (251)
T ss_dssp HHTCCCHHHHGGGEEEEECCSTTTHHHHHHHTHHHHHHSCEEEEEEETGGGGGS-CC------C--THHHHHHHHHHHHH
T ss_pred HhcCCchhhhhcceEEEeccchhHHHHHHHHHHHHhhccccceeeehhhhhhhh-hhhccc-cc--hhhHHHHHHHHHHH
Confidence 34444432 3333333 33445555555666667889999999988862 222211 11 11234445566667
Q ss_pred HHHHhhhcCcEEEEEecCCccccccc-CCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCC
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFG-FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPP 255 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~-~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~ 255 (366)
|.+.+...++++++++|.+...+... +......+.||.+|.|+++.||.+.+.+ +.++.+++.|+|..|+
T Consensus 166 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~l~~~~---------~~~r~l~i~K~r~~~~ 236 (251)
T d1szpa2 166 LQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPTGGNIMAHSSTTRLGFKKGK---------GCQRLCKVVDSPCLPE 236 (251)
T ss_dssp HHHHHHHHCCCEEEEEECC----------------CHHHHHHHHCSEEEEEEECS---------TTEEEEECCSCSSSCC
T ss_pred HHhhhhhcceEEEEEEEEEeccCccccccCcceeccCccchhhheeEEEEEEecC---------CcEEEEEEEECCCCCC
Confidence 77777788999999999988765432 2223356788999999999999998743 3455899999999887
Q ss_pred CCeeEEEEEeCCCCC
Q 017792 256 FKTAQFELEFGKGIS 270 (366)
Q Consensus 256 ~~~~~~~i~~~~Gi~ 270 (366)
.. ..|.|+ +.||.
T Consensus 237 ~~-~~f~It-~~Gi~ 249 (251)
T d1szpa2 237 AE-CVFAIY-EDGVG 249 (251)
T ss_dssp CC-CCEEEE-TTEEE
T ss_pred ee-EEEEEc-CCCcc
Confidence 54 689998 88875
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=99.92 E-value=1.1e-24 Score=195.97 Aligned_cols=207 Identities=17% Similarity=0.171 Sum_probs=154.9
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH--HHHhhcccccCc
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN 112 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~--~~~~~ig~~~~~ 112 (366)
+-.++|||++.||++|+ ||+|+|++++|+|+||+|||+||++++..+...+..++|++.|+.... ..+..++++.+.
T Consensus 4 ~~~ri~TG~~~LD~~l~-GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~~~~~~~~~~~~~~~~~~ 82 (242)
T d1tf7a2 4 SNVRVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEE 82 (242)
T ss_dssp CCCEECCSCHHHHHHTT-SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHH
T ss_pred CCCccCCCcHHHHHhhc-CCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccCCHHHHHHHHHHcCCChHH
Confidence 34579999999999999 999999999999999999999999999999998999999999987654 345556665432
Q ss_pred ------ceecC----CCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhh
Q 017792 113 ------LLLAQ----PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS 182 (366)
Q Consensus 113 ------~~~~~----~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~ 182 (366)
+.+.. .....+.+..+...+....+++++|||+..+.... .. ..+...+..|.+.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~------~~-------~~~~~~~~~l~~~~~ 149 (242)
T d1tf7a2 83 MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGV------SN-------NAFRQFVIGVTGYAK 149 (242)
T ss_dssp HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSS------CH-------HHHHHHHHHHHHHHH
T ss_pred HhhcCceEEEEeecchhhHHHHHHHHHHHHHhcCCceeeeecchhhhcCC------CH-------HHHHHHHHHHHHHHH
Confidence 12221 23567778888888888899999999999887311 11 123345556666667
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCC-CeeEE
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPF-KTAQF 261 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~-~~~~~ 261 (366)
+.++++++++|...... ....++..+.+++|.++.++... .+. ..++.+.+.|+|.+++. ...+|
T Consensus 150 ~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~~ad~vi~l~~~~---~~~---~~~R~i~v~K~R~~~~~~~~~~f 215 (242)
T d1tf7a2 150 QEEITGLFTNTSDQFMG--------AHSITDSHISTITDTIILLQYVE---IRG---EMSRAINVFKMRGSWHDKAIREF 215 (242)
T ss_dssp HTTCEEEEEEECSSSSC--------CCSSCSSCCTTTCSEEEEEEEEE---ETT---EEEEEEEEEEESSSCCCCBCEEE
T ss_pred HcCCeEEEEEeeEeecc--------ccccCCcceeeecceEEEEEEee---cCC---ceEEEEEEEecCCCCCCCeEEEE
Confidence 88999999999765422 22345566899999999998653 111 12347999999988754 45689
Q ss_pred EEEeCCCCC
Q 017792 262 ELEFGKGIS 270 (366)
Q Consensus 262 ~i~~~~Gi~ 270 (366)
.|+ +.|+.
T Consensus 216 ~I~-~~Gi~ 223 (242)
T d1tf7a2 216 MIS-DKGPD 223 (242)
T ss_dssp EEC-SSCEE
T ss_pred EEe-CCcEE
Confidence 998 78985
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.4e-23 Score=183.87 Aligned_cols=221 Identities=23% Similarity=0.349 Sum_probs=133.5
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC------CeEEEEeCCCCCCHHHHhhcccc
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG------GYCVFIDAEHALDPSLAETIGVK 109 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g------g~vl~id~e~~~~~~~~~~ig~~ 109 (366)
+.+||||++.||.+|+ ||+|+|++++|+||||+||||||++++..++..+ ....+++................
T Consensus 2 ~~ri~TG~~~LD~ll~-GGi~~G~v~~i~G~~GsGKT~l~l~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (242)
T d1n0wa_ 2 IIQITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAER 80 (242)
T ss_dssp CCEECCSCHHHHHHTT-TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHH
T ss_pred CCEEcCCCHHHHHhhc-CCCcCCEEEEEEeCCCCCHHHHHHHHHHHHHHhhccccccceehhhhhhhhhHHHHHHHHHhh
Confidence 6799999999999999 9999999999999999999999999999886542 24566666655543322221111
Q ss_pred c--------CcceecCCCCH---HHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHH
Q 017792 110 T--------ENLLLAQPDCG---EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLS 178 (366)
Q Consensus 110 ~--------~~~~~~~~~~~---e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~ 178 (366)
. .++........ .+...............++.+|++..+.... .... .............++.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~l~ 156 (242)
T d1n0wa_ 81 YGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTD-YSGR---GELSARQMHLARFLRMLL 156 (242)
T ss_dssp TTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-----------CHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhchhhhhhhhhhhhhhhhhhhheeecccceeeeehhh-hhcc---cchhhhHHHHHHHHHHHH
Confidence 1 12222222222 3333344444455667888899988776322 2211 112233344555666677
Q ss_pred HHhhhcCcEEEEEecCCccccccc-CCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecCCCCCCC
Q 017792 179 HSLSLSQTILIFINQVRAKLSTFG-FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFK 257 (366)
Q Consensus 179 ~~l~~~~~tVI~i~h~~~~~~~~~-~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r~~~~~~ 257 (366)
..+...++++++++|.+...+... ...+...+.+|..|.|++|.||.|++.+ +..+.++|.|+|..|+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~l~~~~---------~~~r~~~i~K~r~~~~~- 226 (242)
T d1n0wa_ 157 RLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR---------GETRICKIYDSPCLPEA- 226 (242)
T ss_dssp HHHHHHCCEEEEEC-------------------------CCTTCEEEEEEECS---------TTEEEEEECCBTTBSCE-
T ss_pred HhhhhcceeEEEEEEEeccccccceeecccccccchhhHHHhCcEEEEEEEcC---------CcEEEEEEEeCCCCCCe-
Confidence 777788999999999987655432 2333345778899999999999998642 23457999999988764
Q ss_pred eeEEEEEeCCCCCch
Q 017792 258 TAQFELEFGKGISRE 272 (366)
Q Consensus 258 ~~~~~i~~~~Gi~~~ 272 (366)
..+|.|. +.||...
T Consensus 227 ~~~f~I~-~~Gi~~~ 240 (242)
T d1n0wa_ 227 EAMFAIN-ADGVGDA 240 (242)
T ss_dssp EEEEEEE-TTEEECC
T ss_pred EEEEEEc-CCceEcC
Confidence 6789998 8897643
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=99.90 E-value=1.6e-23 Score=186.44 Aligned_cols=209 Identities=17% Similarity=0.204 Sum_probs=145.2
Q ss_pred CCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEeCCCCCCHH--HHhhcccc
Q 017792 33 PRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPS--LAETIGVK 109 (366)
Q Consensus 33 ~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id~e~~~~~~--~~~~ig~~ 109 (366)
.+.+++||||++.||.+|+ ||+|+|++++|+|+||+|||+|+++++...... +..++|++.|++.... ++...++.
T Consensus 2 ~~~~~~i~TGi~~LD~~l~-GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~ 80 (242)
T d1tf7a1 2 HQAIAKMRTMIEGFDDISH-GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWD 80 (242)
T ss_dssp CSSCCEECCCCTTHHHHTT-SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCC
T ss_pred CCCCCcccCCcHHHHHhhc-CCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHcCCC
Confidence 3678899999999999999 999999999999999999999999988765544 5678999998876532 23333332
Q ss_pred cCcc------------------eecCCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHH
Q 017792 110 TENL------------------LLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS 171 (366)
Q Consensus 110 ~~~~------------------~~~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~ 171 (366)
.+.. ..........+++.+...+...+++++++|++..+.... . .. ....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~--~----~~------~~~~ 148 (242)
T d1tf7a1 81 LAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY--D----AS------SVVR 148 (242)
T ss_dssp HHHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT--C----CH------HHHH
T ss_pred hHHHHHhcchhhhhhccchhhhhhhccccHHHHHHHHHHHHHhhccchhhhhHHHHHHHhc--c----Ch------hHHH
Confidence 2111 111122344566667777777789999999999887311 1 11 1122
Q ss_pred HHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEEEEEecC
Q 017792 172 QALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNK 251 (366)
Q Consensus 172 ~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l~v~K~r 251 (366)
..+..+...+++.++++++++|.....+. ..+...+.+.+|.++.++... .+. ..++.+.|.|+|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~d~i~~~~~~~---~~~---~~~r~l~v~K~R 213 (242)
T d1tf7a1 149 RELFRLVARLKQIGATTVMTTERIEEYGP---------IARYGVEEFVSDNVVILRNVL---EGE---RRRRTLEILKLR 213 (242)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECSSSSSC---------SSTTSCHHHHCSEEEEEEEEC---STT---CCEEEEEEEEET
T ss_pred HHHHHHHHHHHhcCCceEEeecccccccc---------cccCcceeeeccEEEEEEEee---eCC---eeEEEEEEEEcC
Confidence 34556666667889999999998776332 122234677899999887542 211 234579999999
Q ss_pred CCCCC-CeeEEEEEeCCCCC
Q 017792 252 LAPPF-KTAQFELEFGKGIS 270 (366)
Q Consensus 252 ~~~~~-~~~~~~i~~~~Gi~ 270 (366)
.++.. ....|+|. +.||.
T Consensus 214 ~~~~~~~~~~f~I~-~~Gi~ 232 (242)
T d1tf7a1 214 GTSHMKGEYPFTIT-DHGIN 232 (242)
T ss_dssp TSCCCCSEEEEEEE-TTEEE
T ss_pred CCCCCCeEEEEEEe-CCcEE
Confidence 87643 46679998 77875
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=99.90 E-value=1.8e-23 Score=187.28 Aligned_cols=219 Identities=27% Similarity=0.408 Sum_probs=152.8
Q ss_pred CCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc----------------CCeEEEEeCCCC
Q 017792 34 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ----------------GGYCVFIDAEHA 97 (366)
Q Consensus 34 ~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~----------------gg~vl~id~e~~ 97 (366)
....+||||++.||.+|+ ||+|+|++++|+|+||+|||||+++++..+... +.+++|++.+..
T Consensus 11 ~~~~~i~TG~~~LD~ll~-GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~ 89 (258)
T d2i1qa2 11 STVWKLSTSSSELDSVLG-GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 89 (258)
T ss_dssp TTCCEECCSCHHHHHHTT-SSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred CCCceecCCCHHHHHhcC-CCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCCceEEeecccchhcCceEEEEEecCC
Confidence 456799999999999999 999999999999999999999999999988643 346899999988
Q ss_pred CCHHH----Hhhcccc----cCcceecCCCCHHHHHHHH----HHHHhcCCceEEEEecccccCCCCccCCccchhhHHH
Q 017792 98 LDPSL----AETIGVK----TENLLLAQPDCGEQALSLV----DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAM 165 (366)
Q Consensus 98 ~~~~~----~~~ig~~----~~~~~~~~~~~~e~~l~~~----~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~ 165 (366)
.+... ....... ..++.+.......+....+ ..+.......++++|++..+.. ..... ......
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vid~i~~~~~-~~~~~---~~~~~~ 165 (258)
T d2i1qa2 90 FRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR-NEYTG---RGKLAE 165 (258)
T ss_dssp CCHHHHHHHHHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH-HHCCC---TTSHHH
T ss_pred cCHHHHHHHHhhcchhhhhhhhcceeeccCchhhHHHHHHHHHHHHHHhcccceeeeeEEEEeec-hhccc---cccchh
Confidence 77533 2233322 2344455555555544333 2334455678889999887752 22221 122223
Q ss_pred HHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCccccccEEEE
Q 017792 166 QARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAV 245 (366)
Q Consensus 166 ~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~~~g~~~~l 245 (366)
+...+.+.++.+.......++++++++|.+...+.. .. ....+.+|..|++.+|.++.+++.+ +.++.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~i~l~~~~---------~~~r~l 234 (258)
T d2i1qa2 166 RQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAF-FG-MAEQAIGGHIVGHAATFRFFVRKGK---------GDKRVA 234 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEEECEECC---------CCEESSHHHHHHHCSEEEEEEECS---------TTEEEE
T ss_pred hHHHHHHHHHHHHHhhhhcceEEEeecceEeccccc-cC-CcccccCcchhhhhceEEEEEEEcC---------CCEEEE
Confidence 344455566666666677899999999987765541 22 2245778899999999999998643 235589
Q ss_pred EEEecCCCCCCCeeEEEEEeCCCCC
Q 017792 246 KIVKNKLAPPFKTAQFELEFGKGIS 270 (366)
Q Consensus 246 ~v~K~r~~~~~~~~~~~i~~~~Gi~ 270 (366)
.+.|+|.+|++ ...|.|+ +.||.
T Consensus 235 ~v~K~R~~~~~-~~~f~I~-~~Gi~ 257 (258)
T d2i1qa2 235 KLYDSPHLPDA-EAIFRIT-EKGIQ 257 (258)
T ss_dssp EEEECSSSCCE-EEEEEEE-TTEEE
T ss_pred EEEECCCCCCc-eEEEEEC-CCCcc
Confidence 99999998775 5789998 88874
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=99.86 E-value=4.4e-21 Score=175.84 Aligned_cols=205 Identities=14% Similarity=0.185 Sum_probs=129.3
Q ss_pred CCCCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEeCCCCCCHHHHhh----cc
Q 017792 33 PRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHALDPSLAET----IG 107 (366)
Q Consensus 33 ~~~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~-~~gg~vl~id~e~~~~~~~~~~----ig 107 (366)
+....+|+||++.||.+++ |+.+|++++|.|+||+|||||+++++..+. ..+.+|+|++.|++......+. .+
T Consensus 12 ~~~~~~i~TG~~~lD~~~~--G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E~~~~~~~~r~~~~~~~ 89 (277)
T d1cr2a_ 12 EESVGLLFSGCTGINDKTL--GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNR 89 (277)
T ss_dssp CCCSCBCCCSCTTHHHHHC--SBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTT
T ss_pred CCCccccCCCchhHHHHhc--CCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeeccchhhHHhHHHHHhhc
Confidence 3566799999999999986 899999999999999999999999998765 4678999999998755321111 11
Q ss_pred ccc--------------------------Ccceec---CCCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCcc
Q 017792 108 VKT--------------------------ENLLLA---QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEM 158 (366)
Q Consensus 108 ~~~--------------------------~~~~~~---~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~ 158 (366)
+.. ..+.++ ...+.++++..+.......++++||||++..+.+...-.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvID~l~~l~~~~~~~--- 166 (277)
T d1cr2a_ 90 VRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGES--- 166 (277)
T ss_dssp CCGGGCHHHHHHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHHHHHHHHHHHHHTTCCSEEEEEEEEC-----------
T ss_pred CCchhhcccccchhhhHHHHHHHHHhhccceeeeeccccchhHHHHHHHhhhhhhccCcceEEEccccccccccccc---
Confidence 110 111222 245677888888877888889999999998776422111
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccccc--CCCC--eeeccCCceeeeeceEEEEEEEeceeec
Q 017792 159 GDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFG--FGGP--TEVTCGGNALKFYASVRLNIKRIGLVKK 234 (366)
Q Consensus 159 g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~--~~~~--~~~~~gG~~l~~~ad~~i~l~~~~~~~~ 234 (366)
... .....++..|+.+ +++++|+||+++|.++...... ...| .....|+..+.+.||.++.|.+.....
T Consensus 167 ~~~---~~~~~~~~~l~~l---A~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r~~~~~- 239 (277)
T d1cr2a_ 167 DER---KMIDNLMTKLKGF---AKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQGD- 239 (277)
T ss_dssp --C---HHHHHHHHHHHHH---HHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEECC-----
T ss_pred chh---HHHHHHHHHHHHH---hhhccccceeecccccccccccccccccchhhhcccccchhhhCcEEEEEEecCccC-
Confidence 111 1122233444444 4678999999999987633211 1111 124577888999999999998743211
Q ss_pred CccccccEEEEEEEecCCC
Q 017792 235 GEETIGSQIAVKIVKNKLA 253 (366)
Q Consensus 235 ~~~~~g~~~~l~v~K~r~~ 253 (366)
....+.+.+.|||+.
T Consensus 240 ----~~~~~~l~v~KnR~~ 254 (277)
T d1cr2a_ 240 ----MPNLVLVRILKCRFT 254 (277)
T ss_dssp ------CEEEEEEEEETTT
T ss_pred ----CCCeEEEEEEccCCC
Confidence 123457999999973
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=3e-18 Score=156.24 Aligned_cols=217 Identities=14% Similarity=0.232 Sum_probs=129.1
Q ss_pred cccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh----------cCCeEEEEeCCCCCCH--HHHhh
Q 017792 38 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR----------QGGYCVFIDAEHALDP--SLAET 105 (366)
Q Consensus 38 ~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~----------~gg~vl~id~e~~~~~--~~~~~ 105 (366)
.+..+-|.+|.+++ |+.+|+++.|+|++|+|||||+++++..+.. .++.|+|++.|..... .+...
T Consensus 11 ~~~~~~p~~d~li~--G~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~~~~~~~Rl~~ 88 (274)
T d1nlfa_ 11 AFAAAPPPLDYVLP--NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHA 88 (274)
T ss_dssp HHHSCCCCCCEEET--TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHH
T ss_pred HhcCCCCCHHHHhC--CccCCcEEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccchHHHHHHHHHH
Confidence 66778889999997 4556999999999999999999999987653 2457999999987543 12222
Q ss_pred ccccc---------CcceecC------CCCHHHHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHH
Q 017792 106 IGVKT---------ENLLLAQ------PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM 170 (366)
Q Consensus 106 ig~~~---------~~~~~~~------~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l 170 (366)
++... .++.+.. .....+.+..+... ...++++|||++..+.+..+ + + ...++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lvviD~l~~~~~~~~-~----~---~~~~~~- 157 (274)
T d1nlfa_ 89 LGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRA--AEGRRLMVLDTLRRFHIEEE-N----A---SGPMAQ- 157 (274)
T ss_dssp HHTTSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHHH--HTTCSEEEEECGGGGCCSCT-T----C---HHHHHH-
T ss_pred HhhccChhhhhcccccceeccccCccchhHHHHHHHHHHHh--ccCccEEecCchhhhccccc-c----c---hhhHHH-
Confidence 21111 1111111 11112223322222 24689999999998874221 1 1 122333
Q ss_pred HHHHHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceee-----cCccccccEEEE
Q 017792 171 SQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVK-----KGEETIGSQIAV 245 (366)
Q Consensus 171 ~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~-----~~~~~~g~~~~l 245 (366)
.+..|...+++++|+||+++|.++.-...+...+.....|+.+|.+.||.++.|.+...-. ...+..+..+.+
T Consensus 158 --~~~~l~~la~~~~~~vi~v~H~~K~~~~~~~~~~~~~~~Gssai~~~a~~v~~l~r~~~~~~~~~~~~~~~~~~~~~~ 235 (274)
T d1nlfa_ 158 --VIGRMEAIAADTGCSIVFLHHASKGAAMMGAGDQQQASRGSSVLVDNIRWQSYLSSMTSAEAEEWGVDDDQRRFFVRF 235 (274)
T ss_dssp --HHHHHHHHHHHHCCEEEEEEEC--------------------CTGGGCSCEEEEEECCHHHHHHTTCCTTSGGGEEEE
T ss_pred --HHHHHHHHhhcCCCceehhhhccccccccCCcccccccccHHHHHhhccEEEEEEecchhhhhhccCcccccCcEEEE
Confidence 3444444456789999999998875322111222234678899999999999999853211 122334556689
Q ss_pred EEEecCCCCCCCeeEEEEEeCCCCC
Q 017792 246 KIVKNKLAPPFKTAQFELEFGKGIS 270 (366)
Q Consensus 246 ~v~K~r~~~~~~~~~~~i~~~~Gi~ 270 (366)
.+.|||+++|+....|... +.|+.
T Consensus 236 ~v~K~~~~~~~~~~~~~~~-~~g~~ 259 (274)
T d1nlfa_ 236 GVSKANYGAPFADRWFRRH-DGGVL 259 (274)
T ss_dssp EEEECSSSSCCCCEEEEEC-GGGCE
T ss_pred EEEeeCCCCCCceEEEEEe-CCcCC
Confidence 9999999999877777665 44543
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.72 E-value=1.5e-18 Score=154.66 Aligned_cols=155 Identities=14% Similarity=0.181 Sum_probs=111.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHH-----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLV----- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~----- 128 (366)
+++|++++|+||||||||||++++++...+..|. +++++.+... +...+.+|+.+|+..+++..|+.+.+.+.
T Consensus 29 v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~-I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~ 107 (239)
T d1v43a3 29 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR-IYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKK 107 (239)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE-EEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--C
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCE-EEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHHHHcC
Confidence 7899999999999999999999999999888886 6777765433 23456799999999888888888876532
Q ss_pred ----------HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 ----------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ----------~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
..++...+ ++....-. ..++++ |++|+...||+++.. ++.+.
T Consensus 108 ~~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LSG--Gq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll 179 (239)
T d1v43a3 108 FPKDEIDKRVRWAAELLQ-----IEELLNRY-PAQLSG--GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI 179 (239)
T ss_dssp CCHHHHHHHHHHHHHHTT-----CGGGTTSC-TTTCCS--SCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcC-----ChhhhcCC-hhhCCH--HHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHH
Confidence 11222111 23333333 356666 899999999988654 66666
Q ss_pred HHh-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 179 HSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 179 ~~l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
..+ ++.|+|||+++|.... +..+||+++.|++++++..|+
T Consensus 180 ~~l~~~~g~tii~vTHd~~~------------------a~~~~dri~vm~~G~iv~~G~ 220 (239)
T d1v43a3 180 KKLQQKLKVTTIYVTHDQVE------------------AMTMGDRIAVMNRGQLLQIGS 220 (239)
T ss_dssp HHHHHHHTCEEEEEESCHHH------------------HHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHhcCCeEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEcC
Confidence 665 4569999999998765 667899999999998877765
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=4.4e-19 Score=157.60 Aligned_cols=160 Identities=17% Similarity=0.222 Sum_probs=93.0
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||++.+++...+.+|. ++++++...+ +...+.+|+++|+..+++..|+.+++.+......
T Consensus 23 i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~-I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~ 101 (232)
T d2awna2 23 IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD-LFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG 101 (232)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE-EEESSSCCTTSCGGGTCEEEECSSCCC------------------
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCE-EEECCEECCCCchhhceeeeeccccccccchhHHHHHHHHHHHcC
Confidence 7899999999999999999999999988888886 6777776543 2345679999999988888888777654322110
Q ss_pred cC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh-h
Q 017792 134 SG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-S 182 (366)
Q Consensus 134 ~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l-~ 182 (366)
.. -...+-+....... ..++++ |++|+...||+++.. ++.+...+ +
T Consensus 102 ~~~~~~~~~v~~~l~~~~l~~~~~~~-~~~LSG--GqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~ 178 (232)
T d2awna2 102 AKKEVINQRVNQVAEVLQLAHLLDRK-PKALSG--GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 178 (232)
T ss_dssp ---CHHHHHHHHHHHHC------------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 00 01112223332333 245666 888888888888764 55555444 5
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.|+|||+++|.... +..+||+++.|++++++..|+
T Consensus 179 ~~g~tii~vTHd~~~------------------a~~~~dri~vm~~G~iv~~G~ 214 (232)
T d2awna2 179 RLGRTMIYVTHDQVE------------------AMTLADKIVVLDAGRVAQVGK 214 (232)
T ss_dssp HSCCEEEEEESCHHH------------------HHHHCSEEEEEETTEEEEEEC
T ss_pred hcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEeC
Confidence 679999999998765 667899999999888776654
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.72 E-value=6.5e-19 Score=156.09 Aligned_cols=160 Identities=16% Similarity=0.195 Sum_probs=116.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
+++|++++|+||||||||||++.+++...+..|. +++++++..+ ....+.+|+.+|+..+++..|+.+.+.+......
T Consensus 23 i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~-I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~ 101 (229)
T d3d31a2 23 VESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR-ILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK 101 (229)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEE-EEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCE-EEEccEeccccchhHhcceeeccccccCccccHHHHHHHHHhhcc
Confidence 7899999999999999999999999998888887 6777766543 3446789999999999988999998876544322
Q ss_pred cCCce-------EEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh-hhcC
Q 017792 134 SGSVD-------VVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-SLSQ 185 (366)
Q Consensus 134 ~~~~~-------lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l-~~~~ 185 (366)
..... .+-+.....-. ..++++ |++|+...||+++.. ++++...+ ++.|
T Consensus 102 ~~~~~~~~~~l~~~~l~~~~~~~-~~~LSG--G~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g 178 (229)
T d3d31a2 102 IKDPKRVLDTARDLKIEHLLDRN-PLTLSG--GEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNK 178 (229)
T ss_dssp CCCHHHHHHHHHHTTCTTTTTSC-GGGSCH--HHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHhcchhhHhCC-hhhCCH--HHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCC
Confidence 11100 00011111111 244554 888888888887653 66666665 4579
Q ss_pred cEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 186 TILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 186 ~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+|||+++|.... +..+||+++.|++++++..|+
T Consensus 179 ~tii~vtHd~~~------------------~~~~~drv~vm~~G~iv~~g~ 211 (229)
T d3d31a2 179 LTVLHITHDQTE------------------ARIMADRIAVVMDGKLIQVGK 211 (229)
T ss_dssp CEEEEEESCHHH------------------HHHHCSEEEEESSSCEEEEEC
T ss_pred cEEEEEcCCHHH------------------HHHhCCEEEEEECCEEEEEcC
Confidence 999999998765 667899999999998877664
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.71 E-value=4.6e-18 Score=150.87 Aligned_cols=158 Identities=18% Similarity=0.238 Sum_probs=110.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HH----HHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PS----LAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~----~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++...+..|. +++++.+... .. +.+.+|+++|++.+++..|+.+.+.+
T Consensus 28 i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~-I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~ 106 (230)
T d1l2ta_ 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE-VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL 106 (230)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE-EEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHH
T ss_pred EcCCCEEEEECCCCCCcchhhHhccCCCCCCcce-eEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHHHHHhH
Confidence 7899999999999999999999998888887776 7777765433 12 24569999999988888899887655
Q ss_pred HHHHHhcCC-------------ceEEEE-ecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 128 VDTLIRSGS-------------VDVVVV-DSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 128 ~~~~~~~~~-------------~~lvvi-Dsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
-........ ..++-+ |.+.... ..++++ |++|+...||+++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-p~~LSG--GqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~ 183 (230)
T d1l2ta_ 107 PLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-PNQLSG--GQQQRVAIARALANNPPIILADQPTGALDSKTGEK 183 (230)
T ss_dssp HHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCC-hhhCCH--HHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHH
Confidence 332211000 000000 2222222 245665 899999999988764
Q ss_pred HHHHHHHh-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecC
Q 017792 174 LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 235 (366)
Q Consensus 174 L~~L~~~l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~ 235 (366)
+..+...+ ++.|+|||+++|..+. . .+||+++.|++++++.++
T Consensus 184 i~~~l~~l~~~~g~tii~vTHd~~~------------------a-~~~drv~~m~~G~Iv~~g 227 (230)
T d1l2ta_ 184 IMQLLKKLNEEDGKTVVVVTHDINV------------------A-RFGERIIYLKDGEVEREE 227 (230)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCHHH------------------H-TTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHhhCCEEEEECCCHHH------------------H-HhCCEEEEEECCEEEEec
Confidence 55555555 5679999999997542 3 479999999988776654
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=1.4e-18 Score=155.05 Aligned_cols=161 Identities=17% Similarity=0.208 Sum_probs=115.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---H---HHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---P---SLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~---~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++...+..|. +++++++... . .+++++|+++|+..++++.|+.+.+.+.
T Consensus 28 i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~-I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~ 106 (240)
T d3dhwc1 28 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS-VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP 106 (240)
T ss_dssp ECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEE-EEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCccccCCc-eEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHHH
Confidence 7899999999999999999999999988887776 6777765432 1 2346799999999888888988876653
Q ss_pred HHHHhcCC----------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHH
Q 017792 129 DTLIRSGS----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLS 178 (366)
Q Consensus 129 ~~~~~~~~----------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~ 178 (366)
..+..... ...+-++...... ..++++ |++|+...||+++.. ++.+.
T Consensus 107 l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~-~~~LSG--G~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l 183 (240)
T d3dhwc1 107 LELDNTPKDEVKRRVTELLSLVGLGDKHDSY-PSNLSG--GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL 183 (240)
T ss_dssp HHTTTCCTTHHHHHHHHHHHHHSTTTTTSSC-BSCCCH--HHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCH--HHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHH
Confidence 32211000 0011112222222 245665 899999999988764 55666
Q ss_pred HHh-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCcc
Q 017792 179 HSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEE 237 (366)
Q Consensus 179 ~~l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~~ 237 (366)
..+ ++.|+|||+++|.... +..+||+++.|++++++..|..
T Consensus 184 ~~l~~~~g~tvi~vTHdl~~------------------~~~~~dri~vl~~G~iv~~G~~ 225 (240)
T d3dhwc1 184 KDINRRLGLTILLITHEMDV------------------VKRICDCVAVISNGELIEQDTV 225 (240)
T ss_dssp HHHHHHHCCEEEEEBSCHHH------------------HHHHCSEEEEEETTEEEEEEET
T ss_pred HHHHhccCCEEEEEcCCHHH------------------HHHhCCEEEEEECCEEEEECCH
Confidence 555 4569999999998765 6678999999999887776643
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.70 E-value=1.2e-18 Score=155.46 Aligned_cols=160 Identities=16% Similarity=0.196 Sum_probs=115.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-------HHHHhhcccccCcceecCCCCHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENLLLAQPDCGEQALSL 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-------~~~~~~ig~~~~~~~~~~~~~~e~~l~~ 127 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... ..+.+.+|+.+|++.+++..|+.+.+.+
T Consensus 26 i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~-I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~ 104 (240)
T d1g2912 26 VKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ-IYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAF 104 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEE-EEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHH
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCE-EEECCEEecccchhhhcccccccceecccchhhcchhhhhHhhhh
Confidence 7899999999999999999999999998888786 5777654322 1235679999999998888899888766
Q ss_pred HHHHHhcC----------CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 VDTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 ~~~~~~~~----------~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
........ -...+-+.....-. ..++++ |++|+...||+++.. ++.+
T Consensus 105 ~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~-p~~LSG--GqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~ 181 (240)
T d1g2912 105 PLKLRKVPRQEIDQRVREVAELLGLTELLNRK-PRELSG--GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE 181 (240)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCC-GGGSCH--HHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHH
T ss_pred hHHHcCCCHHHHHHHHHHHHHHcCChhHhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHH
Confidence 43321100 00111122222222 355665 899999999988764 5665
Q ss_pred HHHh-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 178 SHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 178 ~~~l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
...+ ++.|+|||+++|.... +..+||+++.|++++++..|+
T Consensus 182 l~~l~~~~g~tvi~vTHd~~~------------------~~~~~drv~vm~~G~iv~~G~ 223 (240)
T d1g2912 182 LKKLQRQLGVTTIYVTHDQVE------------------AMTMGDRIAVMNRGVLQQVGS 223 (240)
T ss_dssp HHHHHHHHTCEEEEEESCHHH------------------HHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHhccCCEEEEEcCCHHH------------------HHHhCCEEEEEECCEEEEEcC
Confidence 5555 4569999999998765 667899999999888776654
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.70 E-value=1.8e-18 Score=154.24 Aligned_cols=155 Identities=19% Similarity=0.233 Sum_probs=114.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
+++|++++|+||||||||||++.+++...+..|. +++++..... ..+.+++|+++|+..+++..|+.+.+.+.
T Consensus 28 i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~-I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~ 106 (242)
T d1oxxk2 28 IENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE-LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFP 106 (242)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEE-EEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGG
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCce-EEECCEEeecCchhhcchhhccceEEeccccccccccHHHHhhhh
Confidence 7899999999999999999999999988888886 5666654311 23456799999999888888888876542
Q ss_pred ---------------HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 129 ---------------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 129 ---------------~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
..++.. +-++...... ..++++ |++|+...||+++..
T Consensus 107 l~~~~~~~~~~~~~v~~~l~~-----~gL~~~~~~~-p~~LSG--GqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~ 178 (242)
T d1oxxk2 107 LTNMKMSKEEIRKRVEEVAKI-----LDIHHVLNHF-PRELSG--AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS 178 (242)
T ss_dssp GTTSSCCHHHHHHHHHHHHHH-----TTCGGGTTSC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHH
T ss_pred hHhhcCCHHHHHHHHHHHHhh-----cChHhhhhCC-hhhCCH--HHHhHHHHHhHHhhcccceeecCCccCCCHHHHHH
Confidence 112111 1123333333 255665 889999999988764
Q ss_pred HHHHHHHh-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 LRKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 L~~L~~~l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
++++.+.+ ++.|+|||+++|..+. +..+||+++.|++++++..|+
T Consensus 179 i~~~i~~l~~~~g~tvi~vTHd~~~------------------~~~~~dri~vm~~G~iv~~g~ 224 (242)
T d1oxxk2 179 ARALVKEVQSRLGVTLLVVSHDPAD------------------IFAIADRVGVLVKGKLVQVGK 224 (242)
T ss_dssp HHHHHHHHHHHHCCEEEEEESCHHH------------------HHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHhccCCEEEEEECCHHH------------------HHHhCCEEEEEECCEEEEEcC
Confidence 66666665 5579999999998765 567899999999988777664
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.67 E-value=2.1e-17 Score=149.40 Aligned_cols=156 Identities=13% Similarity=0.171 Sum_probs=114.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC------------C----HHHHhhcccccCcceecCC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL------------D----PSLAETIGVKTENLLLAQP 118 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~------------~----~~~~~~ig~~~~~~~~~~~ 118 (366)
+++|++++|+||||||||||++.+++...+..|. +++++++.. . ..+.+++|+++|++.+++.
T Consensus 25 i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~-I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~ 103 (258)
T d1b0ua_ 25 ARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA-IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSH 103 (258)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCC-EEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechhhccc
Confidence 7799999999999999999999999988777776 677766532 1 2456789999999988888
Q ss_pred CCHHHHHHHHH----------------HHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH---------
Q 017792 119 DCGEQALSLVD----------------TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------- 173 (366)
Q Consensus 119 ~~~e~~l~~~~----------------~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------- 173 (366)
.++.+.+.... ..+..... .+....-. ..++++ |++|+...||+++..
T Consensus 104 ~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~-p~~LSG--G~~QRv~iAraL~~~P~llilDEP 176 (258)
T d1b0ua_ 104 MTVLENVMEAPIQVLGLSKHDARERALKYLAKVGI----DERAQGKY-PVHLSG--GQQQRVSIARALAMEPDVLLFDEP 176 (258)
T ss_dssp SCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC----CHHHHTSC-GGGSCH--HHHHHHHHHHHHHTCCSEEEEEST
T ss_pred hhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCC----chhhhccC-cccccH--HHHHHHHHHHHHhcCCCEEEeccc
Confidence 88877654321 11111111 12122222 245666 899999999988764
Q ss_pred -----------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 -----------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 -----------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++.+.+++.|+|||+++|.... +..+||+++.|++++++..|+
T Consensus 177 T~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~------------------~~~~adri~vm~~G~iv~~g~ 232 (258)
T d1b0ua_ 177 TSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF------------------ARHVSSHVIFLHQGKIEEEGD 232 (258)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHH------------------HHHHCSEEEEEETTEEEEEEC
T ss_pred cccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEcC
Confidence 667777777889999999998765 667899999999988777664
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.67 E-value=1.2e-17 Score=149.32 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=114.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++++... ....+.+|+.+|...+++..++.+.+.+...+.
T Consensus 25 v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~-i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~ 103 (238)
T d1vpla_ 25 IEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI-VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY 103 (238)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCE-EEECcEecccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhc
Confidence 7899999999999999999999999999888887 6666665433 355678999999988888888888776654432
Q ss_pred hcCCc----------eEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHhh
Q 017792 133 RSGSV----------DVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSLS 182 (366)
Q Consensus 133 ~~~~~----------~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l~ 182 (366)
..... +.+-++....-. -..+++ |++|+...||+++.. +..+.+.++
T Consensus 104 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~lSg--G~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~ 180 (238)
T d1vpla_ 104 ASSSSEIEEMVERATEIAGLGEKIKDR-VSTYSK--GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 180 (238)
T ss_dssp CCCHHHHHHHHHHHHHHHCCGGGGGSB-GGGCCH--HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHhhh-hhhCCH--HHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 11110 000011111111 233443 777777777776553 677777777
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.|.|||+++|..++ +..+||+++.|++++++..|+
T Consensus 181 ~~g~tii~~tH~l~~------------------~~~~~drv~vl~~G~iv~~g~ 216 (238)
T d1vpla_ 181 QEGLTILVSSHNMLE------------------VEFLCDRIALIHNGTIVETGT 216 (238)
T ss_dssp HTTCEEEEEECCHHH------------------HTTTCSEEEEEETTEEEEEEE
T ss_pred hcCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEcC
Confidence 789999999998876 566899999999888777654
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.66 E-value=5.8e-17 Score=146.41 Aligned_cols=161 Identities=17% Similarity=0.197 Sum_probs=111.9
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H-H-HHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-S-LAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~-~-~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
-+++|++++|+||||||||||++.+++.+.+..|. +++++++... + . ....+++.+|+..++...++.+.+.+..
T Consensus 26 ~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~ 104 (254)
T d1g6ha_ 26 SVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGR-VYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGE 104 (254)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE-EEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGG
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcE-EEECCEeccchhHHHHHHhcCCccCCccccCCCCeeeeeeeehh
Confidence 37899999999999999999999999998888786 6677665432 2 2 2334889999998888888887764311
Q ss_pred ---------HHHh-cCC-------------ceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH-------------
Q 017792 130 ---------TLIR-SGS-------------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA------------- 173 (366)
Q Consensus 130 ---------~~~~-~~~-------------~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~------------- 173 (366)
.+.. ... .+.+-++...... ...+++ |++|+...||+++..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~Qrv~iAraL~~~P~llilDEPt~gL 181 (254)
T d1g6ha_ 105 ICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK-AGELSG--GQMKLVEIGRALMTNPKMIVMDEPIAGV 181 (254)
T ss_dssp TSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB-GGGSCH--HHHHHHHHHHHHHTCCSEEEEESTTTTC
T ss_pred hhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCc-hhhCCc--HHHHHHHHHHHHHhCcCchhhcCCcccC
Confidence 0000 000 0000111111111 234554 888888888887654
Q ss_pred -------HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 -------LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 -------L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+..+...+++.|+|||+++|..+. +..+||+++.|++++++.+|.
T Consensus 182 D~~~~~~i~~~i~~l~~~g~til~vsHdl~~------------------~~~~~Drv~vm~~G~iv~~g~ 233 (254)
T d1g6ha_ 182 APGLAHDIFNHVLELKAKGITFLIIEHRLDI------------------VLNYIDHLYVMFNGQIIAEGR 233 (254)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEECSCCST------------------TGGGCSEEEEEETTEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCcHHH------------------HHHhCCEEEEEeCCEEEEEec
Confidence 667777777889999999998775 567899999999888776653
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.65 E-value=3e-17 Score=146.04 Aligned_cols=152 Identities=13% Similarity=0.140 Sum_probs=110.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHHHHHHH--------
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLV-------- 128 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~~-------- 128 (366)
+++++|+||||||||||++.+++...+..|. +++++.+... +...+++|+.+|+..+++..|+.+++.+.
T Consensus 24 ~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~-I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~~ 102 (240)
T d2onka1 24 RDYCVLLGPTGAGKSVFLELIAGIVKPDRGE-VRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVE 102 (240)
T ss_dssp SSEEEEECCTTSSHHHHHHHHHTSSCCSEEE-EEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHH
T ss_pred CEEEEEECCCCChHHHHHHHHHcCCCCCceE-EEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhcccCHHH
Confidence 4799999999999999999999999888786 6777765433 23456799999999888888988876542
Q ss_pred -----HHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh-h
Q 017792 129 -----DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL-S 182 (366)
Q Consensus 129 -----~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l-~ 182 (366)
..++... . ++...... ..++++ |++|+...||+++.. ++.+.+.+ +
T Consensus 103 ~~~~v~~~l~~~--g---l~~~~~~~-~~~LSG--G~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~ 174 (240)
T d2onka1 103 RDRRVREMAEKL--G---IAHLLDRK-PARLSG--GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR 174 (240)
T ss_dssp HHHHHHHHHHTT--T---CTTTTTCC-GGGSCH--HHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--C---cHhhhhCC-hhhCCH--HHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHH
Confidence 2222211 1 12333333 245665 899999999988754 55555555 4
Q ss_pred hcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 183 LSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 183 ~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.|+|||+++|..++ +..+||+++.|++++++..|+
T Consensus 175 ~~g~tvi~vtHd~~~------------------~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 175 EFDVPILHVTHDLIE------------------AAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHTCCEEEEESCHHH------------------HHHHCSEEEEEETTEEEEEEC
T ss_pred hcCCeEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEec
Confidence 569999999998765 667899999999887776654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.63 E-value=1.9e-17 Score=148.36 Aligned_cols=161 Identities=15% Similarity=0.231 Sum_probs=110.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhh--cccccCcceecCCCCHHHHHHHHHH
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAET--IGVKTENLLLAQPDCGEQALSLVDT 130 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~--ig~~~~~~~~~~~~~~e~~l~~~~~ 130 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++++... .....+ +++.+|+..+++..|+.+.+.....
T Consensus 29 i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~-I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~ 107 (240)
T d1ji0a_ 29 VPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGK-IIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAY 107 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE-EEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGT
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccE-EEecccccccccHHHHHHhcccccCcccccCCcccHHHHHHHHHH
Confidence 7899999999999999999999999999888887 6677765433 233333 6788898888888888776543211
Q ss_pred HHhcCC-----ce--EEEEecccccCC--CCccCCccchhhHHHHHHHHHHH--------------------HHHHHHHh
Q 017792 131 LIRSGS-----VD--VVVVDSVAALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LRKLSHSL 181 (366)
Q Consensus 131 ~~~~~~-----~~--lvviDsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L~~~l 181 (366)
...... .. +..+..+..... ..++++ |++|+...||+++.. ++++.+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSG--G~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l 185 (240)
T d1ji0a_ 108 NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSG--GEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKI 185 (240)
T ss_dssp TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCH--HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCH--HHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHH
Confidence 000000 00 000011111111 235555 888888888887654 77777777
Q ss_pred hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 182 SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 182 ~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
++.|+|||+++|.... +..+||+++.|++++++.+|+
T Consensus 186 ~~~g~til~~tH~l~~------------------~~~~~drv~vl~~G~iv~~g~ 222 (240)
T d1ji0a_ 186 NQEGTTILLVEQNALG------------------ALKVAHYGYVLETGQIVLEGK 222 (240)
T ss_dssp HHTTCCEEEEESCHHH------------------HHHHCSEEEEEETTEEEEEEE
T ss_pred HhCCCEEEEEeCCHHH------------------HHHhCCEEEEEECCEEEEEcC
Confidence 7889999999998765 567899999999988777654
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.62 E-value=9.8e-17 Score=143.75 Aligned_cols=158 Identities=18% Similarity=0.170 Sum_probs=105.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHH-----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALS----- 126 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~----- 126 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.+..+ ..+++++++++|++.++.. |+.+.+.
T Consensus 25 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~-I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~ 102 (242)
T d1mv5a_ 25 AQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE-ITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEG 102 (242)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSC-EEETTEESTTTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCE-EEECCEEeccccHHHHHhheEEEccccccCCc-chhhheeccccc
Confidence 7899999999999999999999999999988887 6677654332 4567889999999876643 4444321
Q ss_pred --------HHHHHHhcCCceEEEEecccccCC--CCccCCccchhhHHHHHHHHHHH--------------------HHH
Q 017792 127 --------LVDTLIRSGSVDVVVVDSVAALVP--KGELDGEMGDAHMAMQARLMSQA--------------------LRK 176 (366)
Q Consensus 127 --------~~~~~~~~~~~~lvviDsl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L~~ 176 (366)
................+.+..... ...+++ |++|+...||++... +.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSG--GqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~ 180 (242)
T d1mv5a_ 103 DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISG--GQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180 (242)
T ss_dssp CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCH--HHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHH
T ss_pred ccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCH--HHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHH
Confidence 111111111000000111111111 123454 899999999998875 555
Q ss_pred HHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 177 LSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 177 L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.+.+. .++|||+++|..+. +. .||+++.|++++++..|+
T Consensus 181 ~l~~l~-~~~Tvi~itH~l~~------------------~~-~~D~i~vl~~G~iv~~G~ 220 (242)
T d1mv5a_ 181 ALDSLM-KGRTTLVIAHRLST------------------IV-DADKIYFIEKGQITGSGK 220 (242)
T ss_dssp HHHHHH-TTSEEEEECCSHHH------------------HH-HCSEEEEEETTEECCCSC
T ss_pred HHHHHc-CCCEEEEEECCHHH------------------HH-hCCEEEEEECCEEEEECC
Confidence 555554 48999999996643 44 499999999988777765
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.61 E-value=3.2e-16 Score=141.31 Aligned_cols=157 Identities=17% Similarity=0.276 Sum_probs=103.9
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHH----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSL---- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~---- 127 (366)
|++|++++|+||||||||||++.+++.+.+..|. +++++.+... ..+++.+++.+|+..++... +.+.+.+
T Consensus 38 i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~-I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~t-i~~n~~~~~~~ 115 (253)
T d3b60a1 38 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH-ILMDGHDLREYTLASLRNQVALVSQNVHLFNDT-VANNIAYARTE 115 (253)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEE-EEETTEETTTBCHHHHHHTEEEECSSCCCCSSB-HHHHHHTTTTS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhcccCCCccE-EEECCcccchhhhhhhhheEEEEeeccccCCcc-hhhhhhhcCcc
Confidence 7899999999999999999999999999888776 7788765543 46778899999988765432 2222111
Q ss_pred ------HHHHHhcCCceEEEEe----cccccCCC--CccCCccchhhHHHHHHHHHHH--------------------HH
Q 017792 128 ------VDTLIRSGSVDVVVVD----SVAALVPK--GELDGEMGDAHMAMQARLMSQA--------------------LR 175 (366)
Q Consensus 128 ------~~~~~~~~~~~lvviD----sl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~--------------------L~ 175 (366)
+....+.....- .++ .+...... ..+++ |++|+...||+++.. +.
T Consensus 116 ~~~~~~i~~a~~~~~l~~-~i~~l~~gl~t~~~~~~~~LSG--GqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~ 192 (253)
T d3b60a1 116 EYSREQIEEAARMAYAMD-FINKMDNGLDTIIGENGVLLSG--GQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 192 (253)
T ss_dssp CCCHHHHHHHHHTTTCHH-HHHHSTTGGGSBCCTTSCSSCH--HHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhHHH-HHHhccccchhhhcCCCCCcCH--HHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHH
Confidence 111111111000 011 11122211 34554 899999999998765 44
Q ss_pred HHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 176 KLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 176 ~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
++...+. .++|||+|+|..+. +. .||+++.|++++++..|+
T Consensus 193 ~~l~~l~-~~~Tvi~itH~l~~------------------~~-~~D~v~vl~~G~Iv~~G~ 233 (253)
T d3b60a1 193 AALDELQ-KNRTSLVIAHRLST------------------IE-QADEIVVVEDGIIVERGT 233 (253)
T ss_dssp HHHHHHH-TTSEEEEECSCGGG------------------TT-TCSEEEEEETTEEEEEEC
T ss_pred HHHHHhc-cCCEEEEEECCHHH------------------HH-hCCEEEEEECCEEEEECC
Confidence 4444444 38999999997643 43 489999999887776654
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=4.5e-16 Score=139.15 Aligned_cols=154 Identities=21% Similarity=0.273 Sum_probs=103.2
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHH----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSL---- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~---- 127 (366)
+++|++++|+|+||||||||++.+++.+.+..|. +++++.+... ..+++++++++|+..++. .|+.+.+.+
T Consensus 26 i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~-I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~ 103 (241)
T d2pmka1 26 IKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ-VLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPG 103 (241)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE-EEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHCTTSTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCE-EEECCEEecccchhhhhceEEEEecccccCC-ccccccccccCcc
Confidence 7899999999999999999999999999888776 7788765433 467889999999987664 355554322
Q ss_pred ---------HHH-----HHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHH--------------------
Q 017792 128 ---------VDT-----LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA-------------------- 173 (366)
Q Consensus 128 ---------~~~-----~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~-------------------- 173 (366)
+.. .+...... .|....-. ...+++ |++|+...||++...
T Consensus 104 ~~~~~~~~~~~~~~~~~~i~~~~~~---~~t~i~~~-g~~LSG--Gq~QRvalARal~~~p~ililDEpts~LD~~~~~~ 177 (241)
T d2pmka1 104 MSVEKVIYAAKLAGAHDFISELREG---YNTIVGEQ-GAGLSG--GQRQRIAIARALVNNPKILIFDEATSALDYESEHV 177 (241)
T ss_dssp CCHHHHHHHHHHHTCHHHHTTSTTG---GGSBCSTT-TTCCCH--HHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHH
T ss_pred ccHHHHHHHHHHHhhHHHHHhhhcc---hhhhcCCC-CCccCH--HHHHHHhhhhhhhcccchhhhhCCccccCHHHHHH
Confidence 110 11110000 01111111 134444 889998889887654
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++...+. .++|||+++|..+. +. .||+++.|++++++..|+
T Consensus 178 i~~~l~~l~-~~~Tvi~itH~l~~------------------~~-~~D~i~vl~~G~Iv~~G~ 220 (241)
T d2pmka1 178 IMRNMHKIC-KGRTVIIIAHRLST------------------VK-NADRIIVMEKGKIVEQGK 220 (241)
T ss_dssp HHHHHHHHH-TTSEEEEECSSGGG------------------GT-TSSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHh-CCCEEEEEECCHHH------------------HH-hCCEEEEEECCEEEEECC
Confidence 444444443 38999999997653 33 489999999887766654
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=5.7e-16 Score=139.44 Aligned_cols=157 Identities=18% Similarity=0.248 Sum_probs=105.6
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHHH---
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV--- 128 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~~--- 128 (366)
+++|++++|+||||||||||++.+++.+.+..|. +++++.+... ..+++++++++|++.++. .|+.+.+.+.
T Consensus 37 i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~-I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~ 114 (251)
T d1jj7a_ 37 LRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ-LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQ 114 (251)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE-EEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCE-EEECCEecchhhhHHHHHHhhhccccccccC-cchhhhhhhhhcc
Confidence 7899999999999999999999999999888786 6788765432 457788999999987764 4665554321
Q ss_pred --------HHHHhcCCceEEEEe----cccccCC--CCccCCccchhhHHHHHHHHHHH--------------------H
Q 017792 129 --------DTLIRSGSVDVVVVD----SVAALVP--KGELDGEMGDAHMAMQARLMSQA--------------------L 174 (366)
Q Consensus 129 --------~~~~~~~~~~lvviD----sl~~l~~--~~~l~~~~g~~~~~~~ar~l~~~--------------------L 174 (366)
.......... ++. .+..... ...+++ |++|+...||++... +
T Consensus 115 ~~~~~~~~~~~~~~~~~~--~i~~l~~g~~~~i~~~~~~LSG--GqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i 190 (251)
T d1jj7a_ 115 KPTMEEITAAAVKSGAHS--FISGLPQGYDTEVDEAGSQLSG--GQRQAVALARALIRKPCVLILDDATSALDANSQLQV 190 (251)
T ss_dssp CCCHHHHHHHHHHHTCHH--HHHTSTTGGGCBCCSSCSSSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHH--HHHhccccchhhHhccCccCCh--hHceEEEEeeccccCCcEEEecCcCcccChhhHHHH
Confidence 0000000000 001 1111111 134555 899999999988654 4
Q ss_pred HHHHHHh-hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 175 RKLSHSL-SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 175 ~~L~~~l-~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
.++...+ ++.++|||+++|..+. +. .||+++.|++++++..|+
T Consensus 191 ~~~l~~l~~~~~~Tvi~itH~l~~------------------~~-~aDrI~vl~~G~iv~~Gt 234 (251)
T d1jj7a_ 191 EQLLYESPERYSRSVLLITQHLSL------------------VE-QADHILFLEGGAIREGGT 234 (251)
T ss_dssp HHHHHTCGGGGGCEEEEECSCHHH------------------HH-TCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHhhhcCCEEEEEeCCHHH------------------HH-hCCEEEEEECCEEEEECC
Confidence 4444433 3469999999997643 43 489999999888776654
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.49 E-value=2.4e-15 Score=135.45 Aligned_cols=158 Identities=20% Similarity=0.264 Sum_probs=103.5
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC---HHHHhhcccccCcceecCCCCHHHHHHH----
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSL---- 127 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~---~~~~~~ig~~~~~~~~~~~~~~e~~l~~---- 127 (366)
+++|++++|+|+||||||||++.+++.+.+..|. +++++.+... ..+++++++++|+..++. .|+.+++.+
T Consensus 41 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~-I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~~~ 118 (255)
T d2hyda1 41 IEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ-ILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGRPT 118 (255)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE-EEETTEEGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGCSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHhcCCccccc-cccCCEEcccCCHHHhhheeeeeeccccCCC-CCHHHHHhccCcC
Confidence 7899999999999999999999999988887776 6777654322 467889999999887654 355554322
Q ss_pred -----HHHHHhcCCceEEE---EecccccCCC--CccCCccchhhHHHHHHHHHHH--------------------HHHH
Q 017792 128 -----VDTLIRSGSVDVVV---VDSVAALVPK--GELDGEMGDAHMAMQARLMSQA--------------------LRKL 177 (366)
Q Consensus 128 -----~~~~~~~~~~~lvv---iDsl~~l~~~--~~l~~~~g~~~~~~~ar~l~~~--------------------L~~L 177 (366)
+...++.....-.+ -+.+...... ..+++ |++|+...||++.+. +.+.
T Consensus 119 ~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSg--Gq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~ 196 (255)
T d2hyda1 119 ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSG--GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA 196 (255)
T ss_dssp CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCH--HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCH--HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH
Confidence 11111111110000 0111111111 23444 899999999998764 4444
Q ss_pred HHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 178 SHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 178 ~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
...+. .+.|||+++|..+. +. .||+++.|++++++..|+
T Consensus 197 l~~l~-~~~TvI~itH~~~~------------------~~-~~D~ii~l~~G~iv~~G~ 235 (255)
T d2hyda1 197 LDVLS-KDRTTLIVAHRLST------------------IT-HADKIVVIENGHIVETGT 235 (255)
T ss_dssp HHHHT-TTSEEEEECSSGGG------------------TT-TCSEEEEEETTEEEEEEC
T ss_pred HHHHh-cCCEEEEEeCCHHH------------------HH-hCCEEEEEECCEEEEECC
Confidence 44444 38899999997653 33 489999999887766654
|
| >d1u94a2 d.48.1.1 (A:269-328) RecA protein, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Anti-LPS factor/recA domain superfamily: RecA protein, C-terminal domain family: RecA protein, C-terminal domain domain: RecA protein, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=2.2e-14 Score=98.34 Aligned_cols=57 Identities=33% Similarity=0.546 Sum_probs=55.1
Q ss_pred chhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHHHHHHHh
Q 017792 271 RESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVIKLREKL 327 (366)
Q Consensus 271 ~~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 327 (366)
+.++++++|.++++|.|+|+||+|+++++ ||+++++.||++||+++++|+.+||+++
T Consensus 2 ~~GellDlav~~~ii~KsGsWysy~~eklGQGre~~~~~L~enpel~~eie~~ire~l 59 (60)
T d1u94a2 2 FYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELL 59 (60)
T ss_dssp HHHHHHHHHHHTTSEECCTTCEEETTEEEESSHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHcCccccccceEEeCCccccchHHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999 9999999999999999999999999986
|
| >d1mo6a2 d.48.1.1 (A:270-329) RecA protein, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Anti-LPS factor/recA domain superfamily: RecA protein, C-terminal domain family: RecA protein, C-terminal domain domain: RecA protein, C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.49 E-value=2.2e-14 Score=98.27 Aligned_cols=58 Identities=43% Similarity=0.738 Sum_probs=55.4
Q ss_pred CchhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHHHHHHHh
Q 017792 270 SRESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVIKLREKL 327 (366)
Q Consensus 270 ~~~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 327 (366)
++.++++|+|.++++|.|+|+||+|+++++ ||+++++.||++||+++++|+.+||+++
T Consensus 1 Sr~gellDla~~~~ii~KsGaWysy~~ekiGQGre~a~~~L~enpel~~eie~~ir~~l 59 (60)
T d1mo6a2 1 SREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENARNFLVENADVADEIEKKIKEKL 59 (60)
T ss_dssp CHHHHHHHHHHTTTSSEESSSEEECSSSEEEESHHHHHHHHHHCHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHcChhhccCceeEECCchHHhHHHHHHHHHHHCHHHHHHHHHHHHHHc
Confidence 357899999999999999999999999999 9999999999999999999999999875
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=1.8e-14 Score=128.11 Aligned_cols=155 Identities=16% Similarity=0.164 Sum_probs=101.1
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC--C-HHHHhhcccccCcceecCCCCHHHHHHH---
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSL--- 127 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~--~-~~~~~~ig~~~~~~~~~~~~~~e~~l~~--- 127 (366)
-+++|++++|+||||||||||++.+++. .+..|. ++++++... . ..++...++.+++.......++.+.+..
T Consensus 21 ~I~~Gei~~iiG~nGaGKSTLl~~l~Gl-~~~~G~-I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 98 (231)
T d1l7vc_ 21 EVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGS-IQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH 98 (231)
T ss_dssp EEETTCEEECBCCTTSSHHHHHHHHHTS-CCCSSE-EEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCC-CCCceE-EEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHhhhccc
Confidence 4789999999999999999999999884 455565 667776432 2 3445556676665443333444443322
Q ss_pred -------HHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHH---------------------------H
Q 017792 128 -------VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ---------------------------A 173 (366)
Q Consensus 128 -------~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~---------------------------~ 173 (366)
+........ ++....-. ...+++ |++|+...||++.+ .
T Consensus 99 ~~~~~~~~~~~~~~~~-----l~~~~~~~-~~~LSg--G~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~ 170 (231)
T d1l7vc_ 99 DKTRTELLNDVAGALA-----LDDKLGRS-TNQLSG--GEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSA 170 (231)
T ss_dssp CTTCHHHHHHHHHHTT-----CTTTTTSB-GGGCCH--HHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHH
T ss_pred hhhHHHHHHHHHHhcC-----CHhHhCcC-hhhcCH--HHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHH
Confidence 111111111 11111111 234444 78888888888764 1
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 174 LRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 174 L~~L~~~l~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
+.++.+.+++.|+|||+++|..+. +..+||+++.|++++++..|+
T Consensus 171 i~~~i~~l~~~g~tii~vtHdl~~------------------~~~~~dri~vl~~G~iv~~G~ 215 (231)
T d1l7vc_ 171 LDKILSALCQQGLAIVMSSHDLNH------------------TLRHAHRAWLLKGGKMLASGR 215 (231)
T ss_dssp HHHHHHHHHHTTCEEEECCCCHHH------------------HHHHCSBCCBEETTEECCCSB
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHH------------------HHHHCCEEEEEECCEEEEECC
Confidence 677777777889999999998765 677899999999888777764
|
| >d1xp8a2 d.48.1.1 (A:283-341) RecA protein, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Anti-LPS factor/recA domain superfamily: RecA protein, C-terminal domain family: RecA protein, C-terminal domain domain: RecA protein, C-terminal domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=99.46 E-value=4e-14 Score=96.53 Aligned_cols=56 Identities=23% Similarity=0.480 Sum_probs=54.0
Q ss_pred hhhHHHHHHhcCcccccceeEEecCccc-ccHHHHHHHHhhCHHHHHHHHHHHHHHh
Q 017792 272 ESEIIDLALKHKFASKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVIKLREKL 327 (366)
Q Consensus 272 ~~~i~~~~~~~~~i~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 327 (366)
.++++|+|.++++|.++|+||+|+++++ ||+++++.||++||+++++|+.+|++++
T Consensus 2 ~gellDlav~~~ii~KsGaWysy~~e~iGQGre~a~~~L~enpel~~eie~~i~~~l 58 (59)
T d1xp8a2 2 LSDLVGLAADMDIIKKAGSFYSYGDERIGQGKEKTIAYIAERPEMEQEIRDRVMAAI 58 (59)
T ss_dssp HHHHHHHHHHTTSSEEETTEEESSSSEEEESHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcCceecccceEEECCEehhhhHHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999 9999999999999999999999999876
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.31 E-value=1.1e-13 Score=126.28 Aligned_cols=149 Identities=15% Similarity=0.213 Sum_probs=90.2
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHH------
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSL------ 127 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~------ 127 (366)
-+++|++++|+||||||||||++.+++.+.+..|. +.+++ +++|.+|...+++ .++.+.+.+
T Consensus 58 ~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~-I~~~g----------~i~~v~Q~~~l~~-~tv~eni~~~~~~~~ 125 (281)
T d1r0wa_ 58 NIEKGEMLAITGSTGSGKTSLLMLILGELEASEGI-IKHSG----------RVSFCSQFSWIMP-GTIKENIIFGVSYDE 125 (281)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEE-EECCS----------CEEEECSSCCCCS-EEHHHHHTTTSCCCH
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcE-EEECC----------EEEEEeccccccC-ceeeccccccccccc
Confidence 37899999999999999999999999999888775 45554 3677777665543 244443321
Q ss_pred --HHHHHhcCCceEEEEecc----cccCCC--CccCCccchhhHHHHHHHHHHH-----------------HHHHHHH-h
Q 017792 128 --VDTLIRSGSVDVVVVDSV----AALVPK--GELDGEMGDAHMAMQARLMSQA-----------------LRKLSHS-L 181 (366)
Q Consensus 128 --~~~~~~~~~~~lvviDsl----~~l~~~--~~l~~~~g~~~~~~~ar~l~~~-----------------L~~L~~~-l 181 (366)
............ .+..+ ...... ..+++ |++|+...||++++. -..+... +
T Consensus 126 ~~~~~~~~~~~~~~-~i~~l~~~~~~~~~~~~~~LSg--GqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~ 202 (281)
T d1r0wa_ 126 YRYKSVVKACQLQQ-DITKFAEQDNTVLGEGGVTLSG--GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 202 (281)
T ss_dssp HHHHHHHHHTTCHH-HHTTSTTGGGCEECTTCTTSCH--HHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHhHH-HHHhchhhhhhhhhhhccCCCH--HHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHH
Confidence 011111000000 00011 111111 23444 888888888887654 1223222 1
Q ss_pred --hhcCcEEEEEecCCcccccccCCCCeeeccCCceeeeeceEEEEEEEeceeecCc
Q 017792 182 --SLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGE 236 (366)
Q Consensus 182 --~~~~~tVI~i~h~~~~~~~~~~~~~~~~~~gG~~l~~~ad~~i~l~~~~~~~~~~ 236 (366)
...+.|+|+++|..+. + ..||+++.|++++++..|+
T Consensus 203 ~~~~~~~tvi~itH~~~~------------------l-~~aDrI~vl~~G~i~~~Gt 240 (281)
T d1r0wa_ 203 CKLMANKTRILVTSKMEH------------------L-RKADKILILHQGSSYFYGT 240 (281)
T ss_dssp CCCTTTSEEEEECSCHHH------------------H-HTCSEEEEEETTEEEEEEC
T ss_pred HHhhCCCEEEEEechHHH------------------H-HhCCEEEEEECCEEEEECC
Confidence 2358899999996542 3 3589999999887666553
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.27 E-value=1.4e-12 Score=113.19 Aligned_cols=75 Identities=24% Similarity=0.298 Sum_probs=60.7
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
-+++|++++|.||||||||||++.+++.+.+..|. +++++... ..+..++++.+++..+.+..++++.+.....+
T Consensus 23 ~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~-I~~~g~~i--~~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~ 97 (200)
T d1sgwa_ 23 TIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE-IIYNGVPI--TKVKGKIFFLPEEIIVPRKISVEDYLKAVASL 97 (200)
T ss_dssp EEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEETTEEG--GGGGGGEEEECSSCCCCTTSBHHHHHHHHHHH
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhcccccCCCE-EEECCEeh--hHhcCcEEEEeecccCCCCcCHHHHHHHHHHh
Confidence 47899999999999999999999999999988887 45565432 23456788999998888888898888776554
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.53 E-value=9.4e-08 Score=79.43 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=25.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCe
Q 017792 61 VEIYGPEASGKTTLALHVIAEAQRQGGY 88 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~~~~gg~ 88 (366)
++|.||||||||||++.+++.+.+..+.
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~ 30 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKRAIG 30 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEEE
T ss_pred EEEECCCCcHHHHHHHHHHhcCCCCcce
Confidence 7899999999999999999999887665
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=98.36 E-value=2.2e-06 Score=75.97 Aligned_cols=123 Identities=15% Similarity=0.084 Sum_probs=68.4
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhc
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~ 134 (366)
++..+-++|+||||||||+++..++..+ +-.+++++.....+. +...+.. .+..+-...+.
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~---~~~~~~i~~~~l~~~---------------~~g~~~~-~l~~~f~~A~~ 102 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEM---------------FVGVGAS-RVRDMFEQAKK 102 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSSTTS---------------CCCCCHH-HHHHHHHHHHT
T ss_pred CCCCCeEEeeCCCCCCccHHHHHHHHHc---CCCEEEEEhHHhhhc---------------chhHHHH-HHHHHHHHHHH
Confidence 3444558899999999999999998876 456777776543321 1112222 23222233445
Q ss_pred CCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 135 GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 135 ~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
..+.+++||.+..+.+...-....+.. ...+.+..+|..+-..-...++.||.++...+.++
T Consensus 103 ~~P~il~iDeiD~l~~~r~~~~~~~~~---~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~ld 164 (256)
T d1lv7a_ 103 AAPCIIFIDEIDAVGRQRGAGLGGGHD---EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 164 (256)
T ss_dssp TCSEEEEETTHHHHTCCCSTTSCCTTC---HHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSC
T ss_pred cCCEEEEEEChhhhCccCCCCCCCCcH---HHHHHHHHHHHHhhCCCCCCCEEEEEeCCCcccCC
Confidence 678899999998876432222111111 12233444444433221234567776776555543
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.28 E-value=8.5e-06 Score=69.69 Aligned_cols=92 Identities=20% Similarity=0.204 Sum_probs=61.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
+++.++.++||+|+||||.+..++..+...+.+|.++..+.... +.+++.+++.+-. ........+.+....
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~--~~~~~d~~~~~~~~~ 81 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQ--GPEGTDPAALAYDAV 81 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEEC--CCTTCCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceEEe--ccCCccHHHHHHHHH
Confidence 35789999999999999999999988887888889888764322 2456666654311 112233444443333
Q ss_pred HHHhcCCceEEEEecccccC
Q 017792 130 TLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 130 ~~~~~~~~~lvviDsl~~l~ 149 (366)
........++++||......
T Consensus 82 ~~~~~~~~d~ilIDTaGr~~ 101 (207)
T d1okkd2 82 QAMKARGYDLLFVDTAGRLH 101 (207)
T ss_dssp HHHHHHTCSEEEECCCCCCT
T ss_pred HHHHHCCCCEEEcCccccch
Confidence 33333467999999887654
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=98.23 E-value=1.2e-05 Score=68.87 Aligned_cols=92 Identities=22% Similarity=0.240 Sum_probs=64.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~ 129 (366)
....++.++||+|+||||.+-.++..+...+.+|.+++.+.... ..+++.+++.+. ....+....+......
T Consensus 8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~--~~~~~~~~~~~~~~~~ 85 (207)
T d1ls1a2 8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVL--EVMDGESPESIRRRVE 85 (207)
T ss_dssp CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEE--ECCTTCCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCCccc--cccccchhhHHHHHHH
Confidence 35678999999999999999999999988888999888754322 235666666432 1223445666655554
Q ss_pred HHHhcCCceEEEEecccccC
Q 017792 130 TLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 130 ~~~~~~~~~lvviDsl~~l~ 149 (366)
.+......++++||......
T Consensus 86 ~~~~~~~~d~vlIDTaGr~~ 105 (207)
T d1ls1a2 86 EKARLEARDLILVDTAGRLQ 105 (207)
T ss_dssp HHHHHHTCCEEEEECCCCSS
T ss_pred HHHhhccCcceeecccccch
Confidence 44445578999999887654
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.18 E-value=2.2e-05 Score=67.15 Aligned_cols=89 Identities=13% Similarity=0.131 Sum_probs=60.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
.++.++||+|+||||.+-.++..+...+.+|.++..+.... +.+++.+++.+. ....+.....++.......
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~--~~~~~~d~~~~l~~~~~~a 87 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVI--AQHTGADSASVIFDAIQAA 87 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEE--CCSTTCCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCccc--ccccCCCHHHHHHHHHHHH
Confidence 58999999999999999999988887788888888753322 245666676532 1223344555554444434
Q ss_pred hcCCceEEEEecccccC
Q 017792 133 RSGSVDVVVVDSVAALV 149 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~ 149 (366)
...+.++++||......
T Consensus 88 ~~~~~d~ilIDTaGr~~ 104 (211)
T d2qy9a2 88 KARNIDVLIADTAGRLQ 104 (211)
T ss_dssp HHTTCSEEEECCCCCGG
T ss_pred HHcCCCEEEeccCCCcc
Confidence 45678999999876543
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.12 E-value=4.1e-06 Score=74.56 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=69.2
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
.|+++..-+.|+||||+|||+|+..++..+ +-.+++++.- .+. + ......++.+..+-...
T Consensus 36 ~g~~~~~giLL~Gp~GtGKT~l~~ala~~~---~~~~~~~~~~-----~l~---~--------~~~~~~~~~l~~~f~~A 96 (265)
T d1r7ra3 36 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGP-----ELL---T--------MWFGESEANVREIFDKA 96 (265)
T ss_dssp CCCCCCCEEEEBCCTTSSHHHHHHHHHHHT---TCEEEEECHH-----HHH---T--------SCTTTHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEECCCCCcchhHHHHHHHHh---CCcEEEEEHH-----Hhh---h--------ccccchHHHHHHHHHHH
Confidence 578888889999999999999999998877 4455555421 111 1 01112233333333334
Q ss_pred hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 133 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
....+.++++|.+..+.....-.. ++. .....+.+...+..+.....+.++.||.+++..+.++
T Consensus 97 ~~~~p~il~ideid~l~~~~~~~~--~~~-~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 160 (265)
T d1r7ra3 97 RQAAPCVLFFDELDSIAKARGGNI--GDG-GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 160 (265)
T ss_dssp HHTCSEEEEESSGGGTCCHHHHCC--CTT-HHHHHHHHHHHHHTCC------CCEEEECCBSCTTTS
T ss_pred HhcCCcceeHHhhhhccccCCCcC--CCC-cHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCchhCC
Confidence 456789999999998874211111 111 1112222333333333223445788888888766544
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=98.12 E-value=5.3e-06 Score=73.10 Aligned_cols=78 Identities=22% Similarity=0.221 Sum_probs=48.4
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
|++.-.-++++||||+|||+|++.++..+ +..+++++... .....+| ..+..+..+-....
T Consensus 38 g~~~~~giLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~----l~~~~~g------------~~~~~l~~~f~~a~ 98 (247)
T d1ixza_ 38 GARIPKGVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSD----FVEMFVG------------VGAARVRDLFETAK 98 (247)
T ss_dssp TCCCCSEEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHH----HHHSCTT------------HHHHHHHHHHHHHT
T ss_pred CCCCCceEEEecCCCCChhHHHHHHHHHc---CCCEEEEEhHH----hhhcccc------------HHHHHHHHHHHHHH
Confidence 34433448999999999999999998765 45677776411 1111111 11223333333344
Q ss_pred cCCceEEEEecccccCC
Q 017792 134 SGSVDVVVVDSVAALVP 150 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~ 150 (366)
...+.++++|.+..+..
T Consensus 99 ~~~p~Ii~iDeid~l~~ 115 (247)
T d1ixza_ 99 RHAPCIVFIDEIDAVGR 115 (247)
T ss_dssp TSSSEEEEEETHHHHHC
T ss_pred HcCCEEEEEEChhhhCc
Confidence 56778999999988764
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.07 E-value=4.2e-05 Score=65.52 Aligned_cols=90 Identities=18% Similarity=0.124 Sum_probs=60.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
..++.++||+|+||||.+-.++..+...+.+|.++..+...- +.+++.+++.+- ....+......+......
T Consensus 11 p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~--~~~~~~d~~~~~~~~~~~ 88 (213)
T d1vmaa2 11 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVI--SHSEGADPAAVAFDAVAH 88 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEE--CCSTTCCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCcccc--ccCCCCcHHHHHHHHHHH
Confidence 458999999999999999999998888888888888754321 234555665431 112233445555444444
Q ss_pred HhcCCceEEEEecccccC
Q 017792 132 IRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 132 ~~~~~~~lvviDsl~~l~ 149 (366)
....+.++++||......
T Consensus 89 ~~~~~~d~ilIDTaGr~~ 106 (213)
T d1vmaa2 89 ALARNKDVVIIDTAGRLH 106 (213)
T ss_dssp HHHTTCSEEEEEECCCCS
T ss_pred HHHcCCCEEEEecccccc
Confidence 445578999999887554
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.96 E-value=1.5e-05 Score=70.43 Aligned_cols=122 Identities=21% Similarity=0.359 Sum_probs=65.0
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
.|+++-+-++|+||||||||+|+..++..+ +..+++++...... . .... .+..+..+-...
T Consensus 33 ~g~~~~~giLL~GppGtGKT~l~~ala~~~---~~~~~~i~~~~l~~----~-----------~~g~-~~~~l~~~f~~A 93 (258)
T d1e32a2 33 IGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMS----K-----------LAGE-SESNLRKAFEEA 93 (258)
T ss_dssp CCCCCCCEEEEECCTTSSHHHHHHHHHHHT---TCEEEEECHHHHTT----S-----------CTTH-HHHHHHHHHHHH
T ss_pred CCCCCCceeEEecCCCCCchHHHHHHHHHh---CCeEEEEEchhhcc----c-----------cccc-HHHHHHHHHHHH
Confidence 355555558999999999999999888765 44555554211000 0 0000 122222222233
Q ss_pred hcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcccc
Q 017792 133 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLS 199 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~ 199 (366)
....+.++++|.+..+.+...- +. ++. ..+.+...+..+.......++.||.+++....++
T Consensus 94 ~~~~p~il~iDeid~l~~~r~~-~~-~~~----~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld 154 (258)
T d1e32a2 94 EKNAPAIIFIDELDAIAPKREK-TH-GEV----ERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 154 (258)
T ss_dssp HHTCSEEEEESSGGGTCCHHHH-CC-CTT----HHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGSC
T ss_pred HhcCCeEEEehhhhhhccCCCC-CC-Cch----HHHHHHHhccccccccccCCccEEEeCCCccccc
Confidence 4567899999999998853211 11 111 1122222222222222334667777777665544
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.92 E-value=1.9e-05 Score=67.58 Aligned_cols=88 Identities=17% Similarity=0.133 Sum_probs=54.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC------HHHHhhcccccCcceecCCCCHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 131 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~------~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~ 131 (366)
..++.++||+|+||||++..++..+...+.+|.++..+...- +.+++.+|+.+.. ...+......+......
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~--~~~~~~~~~~~~~a~~~ 89 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYG--EPGEKDVVGIAKRGVEK 89 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEEC--CTTCCCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceee--cccchhhhHHHHHHHHH
Confidence 468999999999999999999988888888899988764322 2455666654311 12233344444333333
Q ss_pred HhcCCceEEEEecccc
Q 017792 132 IRSGSVDVVVVDSVAA 147 (366)
Q Consensus 132 ~~~~~~~lvviDsl~~ 147 (366)
....+.++++||....
T Consensus 90 ~~~~~~d~IlIDTaGr 105 (211)
T d1j8yf2 90 FLSEKMEIIIVDTAGR 105 (211)
T ss_dssp HHHTTCSEEEEECCCS
T ss_pred hhccCCceEEEecCCc
Confidence 3345789999997764
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.90 E-value=5.5e-06 Score=67.46 Aligned_cols=37 Identities=24% Similarity=0.228 Sum_probs=32.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
++.|+|++|||||||+.+++..+...|.++..+..+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~ 40 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 40 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEecccc
Confidence 7999999999999999999999998888777766543
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.81 E-value=3e-05 Score=66.47 Aligned_cols=101 Identities=21% Similarity=0.299 Sum_probs=65.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCceEE
Q 017792 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVV 140 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~lv 140 (366)
+.|+||+|+|||.|+..++..+...+..++|++...... .....+ ......+..+.+. ..+++
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~~~~~~~------~~dll 101 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ-AMVEHL----------KKGTINEFRNMYK------SVDLL 101 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH-HHHHHH----------HHTCHHHHHHHHH------TCSEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHH-HHHHHH----------HccchhhHHHHHh------hccch
Confidence 679999999999999999999988888899987532111 111110 0112233333322 58999
Q ss_pred EEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecC
Q 017792 141 VVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 194 (366)
Q Consensus 141 viDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~ 194 (366)
+||.+..+.. .. .....|..+...+.+.|..+|+++..
T Consensus 102 ~iDDi~~i~~---------~~-------~~~~~lf~lin~~~~~~~~iiits~~ 139 (213)
T d1l8qa2 102 LLDDVQFLSG---------KE-------RTQIEFFHIFNTLYLLEKQIILASDR 139 (213)
T ss_dssp EEECGGGGTT---------CH-------HHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred hhhhhhhhcC---------ch-------HHHHHHHHHHHHHhhccceEEEecCC
Confidence 9999988762 11 01123455555666789999998774
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=1.2e-05 Score=65.82 Aligned_cols=37 Identities=30% Similarity=0.220 Sum_probs=31.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
+.+.|+||||+|||||+.+++..+...+..+.++...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~ 38 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTE 38 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 4588999999999999999999999887766665543
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.71 E-value=2e-05 Score=64.42 Aligned_cols=37 Identities=32% Similarity=0.321 Sum_probs=32.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
+++.|+|.+|||||||+..++..+...|.+|..+..+
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d 38 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 38 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 4789999999999999999999999988888777544
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.69 E-value=2.7e-05 Score=69.18 Aligned_cols=56 Identities=29% Similarity=0.549 Sum_probs=48.0
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEe
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFID 93 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-gg~vl~id 93 (366)
..+.+.||+..+|.++. +-+|+-++|+|++|+|||+|+.+++.+.++. ..-++|..
T Consensus 48 i~~~l~TGIraID~l~p---igkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~~~ 104 (276)
T d2jdid3 48 EQEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 104 (276)
T ss_dssp CCCEECCSCHHHHHHSC---EETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEEEE
T ss_pred CCcccccCceeeeeecc---ccCCCEEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEEEE
Confidence 35689999999999998 8899999999999999999999999887654 45567764
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.67 E-value=6.6e-05 Score=65.75 Aligned_cols=75 Identities=27% Similarity=0.279 Sum_probs=44.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCce
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVD 138 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~ 138 (366)
.-++|+||||||||+|++.++..+ +..++.++.-... .|+ ...+..+.+..+-.......+.
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~-------~g~--------~~~~~~~~i~~if~~A~~~~p~ 102 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES---NFPFIKICSPDKM-------IGF--------SETAKCQAMKKIFDDAYKSQLS 102 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEECGGGC-------TTC--------CHHHHHHHHHHHHHHHHTSSEE
T ss_pred eEEEEECcCCCCHHHHHHHHhhcc---ccccccccccccc-------ccc--------cccchhhhhhhhhhhhhhcccc
Confidence 357899999999999999998765 3455555431100 010 0011112222222223445678
Q ss_pred EEEEecccccCCC
Q 017792 139 VVVVDSVAALVPK 151 (366)
Q Consensus 139 lvviDsl~~l~~~ 151 (366)
++++|.+..+.+.
T Consensus 103 il~iDEid~l~~~ 115 (246)
T d1d2na_ 103 CVVVDDIERLLDY 115 (246)
T ss_dssp EEEECCHHHHTTC
T ss_pred eeehhhhhhHhhh
Confidence 9999999888753
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=97.65 E-value=9e-05 Score=67.25 Aligned_cols=125 Identities=15% Similarity=0.082 Sum_probs=67.0
Q ss_pred hHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHH
Q 017792 43 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE 122 (366)
Q Consensus 43 ~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e 122 (366)
.|.+...|+ .-.|+| +++++||||+|||.|+..++..+...- ..+.+++.+... .+...+..
T Consensus 110 ~~~~~~~~~-~~~~~g-~~l~~G~pG~GKT~la~ala~~~~~~~-~~~~~~~~~~~~---------------~~~G~~e~ 171 (321)
T d1w44a_ 110 SPVVAEFGG-HRYASG-MVIVTGKGNSGKTPLVHALGEALGGKD-KYATVRFGEPLS---------------GYNTDFNV 171 (321)
T ss_dssp CCEEEEETT-EEEESE-EEEEECSSSSCHHHHHHHHHHHHHTTS-CCEEEEBSCSST---------------TCBCCHHH
T ss_pred chHHHHHhh-cccCCc-eEEEECCCCccHHHHHHHHHHHhcCCC-CeEEEEhhHhhh---------------cccchHHH
Confidence 455566665 334555 677799999999999999998874221 123344333221 01112222
Q ss_pred HHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEec
Q 017792 123 QALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ 193 (366)
Q Consensus 123 ~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h 193 (366)
.+...+... +. ..++++|.+.++.+...-.+. .+..-|.+.+.|..+-..-...++.||..+.
T Consensus 172 ~~~~~f~~a-~~--~~ilf~DEid~~~~~r~~~~~-----~~~~~r~v~~lL~e~dg~~~~~~v~viaatN 234 (321)
T d1w44a_ 172 FVDDIARAM-LQ--HRVIVIDSLKNVIGAAGGNTT-----SGGISRGAFDLLSDIGAMAASRGCVVIASLN 234 (321)
T ss_dssp HHHHHHHHH-HH--CSEEEEECCTTTC----------------CCHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHH-hh--ccEEEeehhhhhccccccCCC-----CCcchhhhhhhhhhccccccCCCeEEEEeCC
Confidence 222333332 22 469999999998753322111 1122245556666654444456888888876
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.63 E-value=0.00026 Score=59.24 Aligned_cols=36 Identities=17% Similarity=0.117 Sum_probs=29.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
.++.++|.|||||||++..++..+...+..+..++.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~ 38 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNV 38 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcc
Confidence 378999999999999999999888766666655553
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=97.57 E-value=3.1e-05 Score=68.96 Aligned_cols=111 Identities=19% Similarity=0.288 Sum_probs=71.4
Q ss_pred CCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC-CCCCC-HHHHhh---ccccc
Q 017792 36 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA-EHALD-PSLAET---IGVKT 110 (366)
Q Consensus 36 ~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~-e~~~~-~~~~~~---ig~~~ 110 (366)
.+.+.||+..+|.++. +-+|+-++|+|++|+|||+|+..++.........|+|..- |...+ ..+.+. -+...
T Consensus 48 ~~~l~TGi~~ID~l~p---ig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~~~iGer~~Ev~e~~~~~~~~~~~~ 124 (276)
T d1fx0a3 48 YEPLQTGLIAIDAMIP---VGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTNFQERGAME 124 (276)
T ss_dssp CSBCCCSCTTTTTTSC---CBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGG
T ss_pred CccccccceEEecccc---ccCCceEeeccCCCCChHHHHHHHHhhhcccCceeeeeeecchhHHHHHHHHhhccCCcce
Confidence 4578999999999998 8899999999999999999998877665555556677542 22211 111111 11111
Q ss_pred Cccee---------cCCCCHHHHHHHHHHHHhcCCceEEEEecccccC
Q 017792 111 ENLLL---------AQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 111 ~~~~~---------~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
.-+.+ .+....+-.+..++.+...+.-.++++||++.+.
T Consensus 125 ~tvvv~~tsd~p~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~A 172 (276)
T d1fx0a3 125 YTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQA 172 (276)
T ss_dssp SEEEEEECTTSCGGGTTHHHHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred eeeecccccCccHHHHHHHHHHHHHHHHHHHHcCCceeEEeeccHHHH
Confidence 11111 1222334455666666666777788899997664
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=2.5e-05 Score=64.90 Aligned_cols=40 Identities=30% Similarity=0.464 Sum_probs=32.6
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 93 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id 93 (366)
+|. +|.++.|+|+|||||||+++.++..+......+.+++
T Consensus 15 ~~~-~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~ 54 (195)
T d1x6va3 15 GGF-RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 54 (195)
T ss_dssp CSC-CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCC-CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchh
Confidence 566 7889999999999999999999988876655545544
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.53 E-value=2e-05 Score=64.33 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
.|+++.|.|+|||||||++..++.. .+...++++.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~---lg~~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH---hCCCEEEecH
Confidence 4789999999999999998877543 2556666664
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=97.49 E-value=7.9e-05 Score=66.47 Aligned_cols=109 Identities=15% Similarity=0.182 Sum_probs=64.7
Q ss_pred cccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-CeEEEEeCCCCCCHHHHhhcccccCcceec
Q 017792 38 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG-GYCVFIDAEHALDPSLAETIGVKTENLLLA 116 (366)
Q Consensus 38 ~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g-g~vl~id~e~~~~~~~~~~ig~~~~~~~~~ 116 (366)
...+|...+|.++. +.+|+-.+|+|++|+|||+|+.+++....... ..++++..-........+-.......+...
T Consensus 26 ~~~~~~r~ID~l~P---igrGQr~~I~g~~g~GKT~l~~~i~~~~~~~~~~~v~~~~~iger~~ev~~~~~~~~~~vv~~ 102 (289)
T d1xpua3 26 TEDLTARVLDLASP---IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVAS 102 (289)
T ss_dssp STHHHHHHHHHHSC---CBTTCEEEEEECSSSSHHHHHHHHHHHHHHHCTTSEEEEEEEEECHHHHHHHHHHCSSEEEEE
T ss_pred cccccceeeeeccc---ccCCCeeeEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEeeceeHHHHHhHHhhcceEEEec
Confidence 45678899999998 88999999999999999999999998886553 323332211111111111111111111111
Q ss_pred CC-CC-------HHHHHHHHHHHHhcCCceEEEEecccccC
Q 017792 117 QP-DC-------GEQALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 117 ~~-~~-------~e~~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
.. .+ ..-.+...+.+...+.--++++||++.+.
T Consensus 103 t~d~~~~~r~~~~~~a~~iAEyfrd~G~dVLli~Dsltr~A 143 (289)
T d1xpua3 103 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLA 143 (289)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEESCHHHHH
T ss_pred cCCCchhHHHHHHHHHHHHHHHHHHhccCceeecCcHHHHH
Confidence 11 11 22234445555566666788899997553
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.48 E-value=0.0011 Score=57.29 Aligned_cols=91 Identities=13% Similarity=0.095 Sum_probs=51.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcC-CeEEEEeCCCCCCH-HHHhhcccccCcceecCCCCHHHHHHHHHHHH-hcC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQG-GYCVFIDAEHALDP-SLAETIGVKTENLLLAQPDCGEQALSLVDTLI-RSG 135 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~g-g~vl~id~e~~~~~-~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~-~~~ 135 (366)
..+.|+||+|+||||+++.++..+.... -.++++........ .......................+...+.... ...
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERD 123 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhhhhhhhhhhhhHHhhhhhhhhhccchhHHHHHHHHHHhhcc
Confidence 3688999999999999999998886543 35566665444332 22222222111122223334555555444333 334
Q ss_pred CceEEEEecccccC
Q 017792 136 SVDVVVVDSVAALV 149 (366)
Q Consensus 136 ~~~lvviDsl~~l~ 149 (366)
.....++|.+..+.
T Consensus 124 ~~~~~~~~~~d~~~ 137 (276)
T d1fnna2 124 LYMFLVLDDAFNLA 137 (276)
T ss_dssp CCEEEEEETGGGSC
T ss_pred cccccchhHHHHhh
Confidence 55666677665543
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.48 E-value=0.0004 Score=60.02 Aligned_cols=42 Identities=31% Similarity=0.256 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP 100 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~ 100 (366)
.....+.|+||||+||||++..++..+ +..+.+++..+....
T Consensus 50 ~~~~~lll~GPpG~GKTt~a~~la~~~---~~~~~~~~~~~~~~~ 91 (253)
T d1sxja2 50 GVFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVRSK 91 (253)
T ss_dssp TSCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCCCH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH---Hhhhhccccccchhh
Confidence 344579999999999999999998765 456777776655443
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.43 E-value=5.2e-05 Score=61.73 Aligned_cols=32 Identities=28% Similarity=0.396 Sum_probs=27.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGG 87 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg 87 (366)
.+|.++.|+|+|||||||++..++..+.....
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~ 35 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGG 35 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 46889999999999999999999988865543
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.40 E-value=7.4e-05 Score=61.95 Aligned_cols=35 Identities=34% Similarity=0.337 Sum_probs=28.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
+++|.|++||||||||..+...+...+-.+..++.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~ 58 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccccceeccc
Confidence 68899999999999999999888776655555543
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.39 E-value=6.8e-05 Score=61.38 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=28.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 92 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~i 92 (366)
++++|.|++||||||++..++..+...+..+..+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 35 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMV 35 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 6899999999999999999998887666555444
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=0.00022 Score=61.82 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
.++++.|.|||.+||||++++++....
T Consensus 40 ~~~~~iiTGpN~~GKSt~lk~i~l~~~ 66 (234)
T d1wb9a2 40 QRRMLIITGPNMGGKSTYMRQTALIAL 66 (234)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEeccCchhhHHHHHHHHHHHH
Confidence 457899999999999999999987654
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.30 E-value=7.3e-05 Score=60.66 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=24.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
..+.++.|.|+|||||||++..++..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999998766
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.29 E-value=0.00024 Score=63.29 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=41.4
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
..+.+.||+..+|.++. +-+|+-++|+|++|+|||+|+..++.+..
T Consensus 48 i~e~l~TGIraID~l~p---ig~GQr~~If~~~g~GKt~ll~~~~~~~~ 93 (285)
T d2jdia3 48 VREPMQTGIKAVDSLVP---IGRGQRELIIGDRQTGKTSIAIDTIINQK 93 (285)
T ss_dssp CCSBCCCSCHHHHHHSC---CBTTCBCEEEESTTSSHHHHHHHHHHHTH
T ss_pred CCcccccCceEEecccC---ccCCCEEEeecCCCCChHHHHHHHHHhHH
Confidence 35688999999999998 88999999999999999999998887754
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.29 E-value=7e-05 Score=60.89 Aligned_cols=27 Identities=41% Similarity=0.561 Sum_probs=24.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
|+|-.+.|+|+|||||||++..++..+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 678899999999999999999987664
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.29 E-value=0.00031 Score=60.39 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
+++.|.|||.+||||++++++....
T Consensus 36 ~~~iiTGpN~~GKSt~lk~i~l~~i 60 (224)
T d1ewqa2 36 ELVLITGPNMAGKSTFLRQTALIAL 60 (224)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCccccchhhhhhHHHHH
Confidence 4899999999999999999886654
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=97.28 E-value=0.00012 Score=67.69 Aligned_cols=40 Identities=35% Similarity=0.475 Sum_probs=34.1
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
|+|++..++++||||+|||+|+..++..+ ++.++.++..+
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~---~~~~i~in~s~ 189 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVNLPL 189 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCSSCT
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEECcc
Confidence 89999999999999999999999998877 56666665443
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.25 E-value=7.4e-05 Score=59.48 Aligned_cols=32 Identities=31% Similarity=0.389 Sum_probs=23.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
.++.|+|+||||||||+..++... .+ +.+++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~-~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PG-FYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TT-EEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC---CC-CEEech
Confidence 478899999999999998875432 23 455553
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.19 E-value=8.3e-05 Score=60.05 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.++.|.|+|||||||++..++..+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 578999999999999999987654
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.19 E-value=7.9e-05 Score=60.82 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+.|+|.|++||||||||..++..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 568999999999999999998765
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.18 E-value=0.0001 Score=59.72 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+++.|.|+|||||||+++.++..+
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998776
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.10 E-value=0.00014 Score=58.86 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+.|.|+|||||||+|..++..+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999987655
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.10 E-value=0.0017 Score=55.68 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=24.6
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ 85 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~ 85 (366)
+..++. +.|+||+|+||||+++.++..+...
T Consensus 30 ~~~~~~--lll~Gp~G~GKTt~~~~la~~l~~~ 60 (252)
T d1sxje2 30 PRDLPH--LLLYGPNGTGKKTRCMALLESIFGP 60 (252)
T ss_dssp TTCCCC--EEEECSTTSSHHHHHHTHHHHHSCT
T ss_pred CCCCCe--EEEECCCCCCHHHHHHHHHHhhcCc
Confidence 344443 7799999999999999999887433
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.07 E-value=0.00015 Score=59.98 Aligned_cols=26 Identities=38% Similarity=0.563 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
|.++.|+||+||||||++..++....
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 89999999999999999998877654
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.06 E-value=0.0002 Score=59.52 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=27.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
|+|--+.|.|||||||||.|..++..+ + ..+++.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~----g-~~~i~~ 34 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF----C-VCHLAT 34 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH----T-CEEEEH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh----C-CeEEeH
Confidence 677778899999999999999987765 2 356664
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=97.06 E-value=0.0021 Score=50.74 Aligned_cols=114 Identities=12% Similarity=0.161 Sum_probs=69.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--HHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSG 135 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~ 135 (366)
|.+..|+||=.|||||-++..+..+...+.+|+.+....... .....+.|.......+ ....+++..+.......
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~~D~R~~~~i~s~~g~~~~~~~~---~~~~~~~~~~~~~~~~~ 78 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEV---ESAPEILNYIMSNSFND 78 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEE---SSTHHHHHHHHSTTSCT
T ss_pred cEEEEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEcccccccceEEcccCceeeeEEe---ccchhhHHHHHhhcccc
Confidence 789999999999999988888888887788888877543211 1111222322222222 23355555554332234
Q ss_pred CceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCc
Q 017792 136 SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRA 196 (366)
Q Consensus 136 ~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~ 196 (366)
..+++.||..+.+.. .+..+...+.+.|++|++..=..+
T Consensus 79 ~~dvI~IDE~QFf~d----------------------~i~~~~~~~~~~g~~Viv~GLd~D 117 (139)
T d2b8ta1 79 ETKVIGIDEVQFFDD----------------------RICEVANILAENGFVVIISGLDKN 117 (139)
T ss_dssp TCCEEEECSGGGSCT----------------------HHHHHHHHHHHTTCEEEEECCSBC
T ss_pred CcCEEEechhhhcch----------------------hHHHHHHHHHhcCceEEEEEeccc
Confidence 688999999987641 111222333457999888865544
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=97.05 E-value=0.00026 Score=58.04 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=28.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 93 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id 93 (366)
+++.|.|++||||||++..++..+...+-.+..+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~ 36 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 47889999999999999999988876666655554
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=0.0011 Score=56.02 Aligned_cols=92 Identities=17% Similarity=0.056 Sum_probs=49.1
Q ss_pred CCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHH-HHhhcccccCcceecC-----CCCHHHHHH
Q 017792 53 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS-LAETIGVKTENLLLAQ-----PDCGEQALS 126 (366)
Q Consensus 53 GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~-~~~~ig~~~~~~~~~~-----~~~~e~~l~ 126 (366)
|-+|.+ +.|+||+|+||||+++.++..+......... ....... ..-.-+..++-..+.. ....+++.+
T Consensus 21 ~~l~h~--lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~ir~ 95 (207)
T d1a5ta2 21 GRGHHA--LLIQALPGMGDDALIYALSRYLLCQQPQGHK---SCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVRE 95 (207)
T ss_dssp TCCCSE--EEEECCTTSCHHHHHHHHHHHHTCSSCBTTB---CCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHH
T ss_pred CCcCeE--EEEECCCCCcHHHHHHHHHHhcccccccccc---cccccchhhhhhhccccccchhhhhhcccccccchhhH
Confidence 444444 8899999999999999999887633221000 0011111 1111122222111211 123556555
Q ss_pred HHHHHH---hcCCceEEEEecccccC
Q 017792 127 LVDTLI---RSGSVDVVVVDSVAALV 149 (366)
Q Consensus 127 ~~~~~~---~~~~~~lvviDsl~~l~ 149 (366)
....+. ...+.+++++|.+..+.
T Consensus 96 l~~~~~~~~~~~~~kviIide~d~l~ 121 (207)
T d1a5ta2 96 VTEKLNEHARLGGAKVVWVTDAALLT 121 (207)
T ss_dssp HHHHTTSCCTTSSCEEEEESCGGGBC
T ss_pred HhhhhhhccccCccceEEechhhhhh
Confidence 444332 23467899999998886
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.05 E-value=0.0034 Score=49.10 Aligned_cols=39 Identities=28% Similarity=0.404 Sum_probs=34.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
+|.+..|+||=.|||||-+++.+..+...+..|+.+...
T Consensus 1 ~G~L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ikp~ 39 (133)
T d1xbta1 1 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 39 (133)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEET
T ss_pred CcEEEEEEecccCHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 689999999999999999999999888878888888754
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.04 E-value=0.00018 Score=59.93 Aligned_cols=33 Identities=33% Similarity=0.463 Sum_probs=25.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
+..++.|+|||||||||+|..++..+ + ..+++.
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~---g--~~~i~~ 37 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF---G--WVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH---C--CEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH---C--CceEch
Confidence 34689999999999999999997765 2 356654
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=0.00039 Score=59.01 Aligned_cols=39 Identities=15% Similarity=0.303 Sum_probs=34.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
.+|.+++|.|+.||||||++..++..+...|-.++++..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~ 39 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRF 39 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 378999999999999999999999988888878877664
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.02 E-value=0.00016 Score=57.61 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+.|.||+||||||+++.++..+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999998776
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.98 E-value=0.00018 Score=62.84 Aligned_cols=33 Identities=33% Similarity=0.473 Sum_probs=26.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
..+.|+||||||||||+..++..+. ...+.++.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~---~~~~~i~~ 65 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDN 65 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh---cceEEEec
Confidence 4588999999999999999988763 34556654
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=96.95 E-value=0.0001 Score=61.31 Aligned_cols=124 Identities=15% Similarity=0.196 Sum_probs=66.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccc----cCcceec-CCCCHHHHHHHHHHHHhc
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVK----TENLLLA-QPDCGEQALSLVDTLIRS 134 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~----~~~~~~~-~~~~~e~~l~~~~~~~~~ 134 (366)
++.|.|+..||||.+|-+++ ..+++++|+-+-..++..+.+++.-- +.+.... .+....+.+ .. ..
T Consensus 1 iiLVtGGarSGKS~~AE~l~----~~~~~~~YiAT~~~~D~em~~RI~~Hr~rR~~~w~tiE~~~~l~~~l---~~--~~ 71 (180)
T d1c9ka_ 1 MILVTGGARSGKSRHAEALI----GDAPQVLYIATSQILDDEMAARIQHHKDGRPAHWRTAECWRHLDTLI---TA--DL 71 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHH----CSCSSEEEEECCCC------CHHHHHHHTSCTTEEEECCSSCGGGTS---CT--TS
T ss_pred CEEEECCCCccHHHHHHHHH----hcCCCcEEEEccCCCCHHHHHHHHHHHhcCcCCCEEecccccHHHHH---Hh--hc
Confidence 57899999999999998764 34567899988777775544433211 1111111 111222111 10 12
Q ss_pred CCceEEEEecccccCCCCccC-----CccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEec
Q 017792 135 GSVDVVVVDSVAALVPKGELD-----GEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ 193 (366)
Q Consensus 135 ~~~~lvviDsl~~l~~~~~l~-----~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h 193 (366)
...+.+.+|.++.+.. +.+- ..+.+.........+...+..|...+++.+.++|+++.
T Consensus 72 ~~~~~vLlDclt~~l~-N~l~~~~~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~~~~~~ViVsn 134 (180)
T d1c9ka_ 72 APDDAILLECITTMVT-NLLFALGGENDPEQWDYAAMERAIDDEIQILIAACQRCPAKVVLVTN 134 (180)
T ss_dssp CTTCEEEEECHHHHHH-HHHHHC----CTTSCCHHHHHHHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred CcccchhhhhhhHHHH-HHHHhcccccchhhhhhhhHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 3567899999986652 2111 11111122223344556677777777777888888765
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.94 E-value=0.00019 Score=59.98 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=27.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
.++.++.|.|||||||||+|..++..+ + ..++++.
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~----g-~~~is~g 40 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY----G-YTHLSTG 40 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT----C-CEEEEHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh----C-CeeEecc
Confidence 467899999999999999999887654 2 3566653
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.94 E-value=0.0002 Score=58.92 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVI 79 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~ 79 (366)
|.-.++.++|+|||||||++..++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456799999999999999988774
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.00073 Score=58.27 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=27.0
Q ss_pred HHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 45 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 45 ~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
.|-..+..|-+|. .+.|+||+|+||||+++.++..+..
T Consensus 23 ~L~~~i~~~~~~~--~~Ll~Gp~G~GKtt~a~~~~~~l~~ 60 (239)
T d1njfa_ 23 ALANGLSLGRIHH--AYLFSGTRGVGKTSIARLLAKGLNC 60 (239)
T ss_dssp HHHHHHHTTCCCS--EEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCe--eEEEECCCCCcHHHHHHHHHHHhcC
Confidence 3444443234443 5789999999999999999887754
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.90 E-value=0.0004 Score=58.64 Aligned_cols=39 Identities=26% Similarity=0.295 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
+|.+|+|-|+.||||||++..+...+...|..++.+..+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~e 39 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTRE 39 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecC
Confidence 589999999999999999999998888776554444443
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.84 E-value=0.00029 Score=60.56 Aligned_cols=31 Identities=35% Similarity=0.365 Sum_probs=24.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
+.++||||+||||+++.++..+. .....+++
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~---~~~~~~~~ 68 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQ---TNIHVTSG 68 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHT---CCEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHhccC---CCcccccC
Confidence 78999999999999999988764 33455553
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.83 E-value=0.0039 Score=54.86 Aligned_cols=44 Identities=14% Similarity=0.214 Sum_probs=32.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhh----cCCeEEEEeCCCCCC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQR----QGGYCVFIDAEHALD 99 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~----~gg~vl~id~e~~~~ 99 (366)
+...++.|+|..|.||||||.+++..... .-..++|++.....+
T Consensus 42 ~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~ 89 (277)
T d2a5yb3 42 LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAP 89 (277)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCST
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCC
Confidence 44679999999999999999999876432 123578887554443
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.82 E-value=0.00041 Score=58.91 Aligned_cols=40 Identities=28% Similarity=0.351 Sum_probs=33.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEeCC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAE 95 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg~vl~id~e 95 (366)
.+|.++-|.|.|||||||++..+...+.. .+-.++++|++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD 62 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 62 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcch
Confidence 67889999999999999999999877754 35577888764
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.81 E-value=0.00032 Score=58.42 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=27.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
++-.++.|+|||||||||+|..++..+ ...|+++
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~~-----g~~~is~ 39 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKDY-----SFVHLSA 39 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS-----SCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh-----CCeEEeh
Confidence 445689999999999999999997755 2467764
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.81 E-value=0.00089 Score=58.17 Aligned_cols=86 Identities=15% Similarity=0.151 Sum_probs=48.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhc------CCeEEEEeCCCCCCHH-----HHhhcccccCcceecCCCCHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDPS-----LAETIGVKTENLLLAQPDCGEQALSLV 128 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~------gg~vl~id~e~~~~~~-----~~~~ig~~~~~~~~~~~~~~e~~l~~~ 128 (366)
++.|+||||+|||++++.++..+... ...++|++........ .....+... .....+.......+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l 123 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPI----QVRGAPALDILKAL 123 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCC----CCTTCCHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeeccccccchhhHHHHHhhhccccc----ccccchHHHHHHHH
Confidence 45567999999999999999887532 1345565544333321 111222211 12233444444444
Q ss_pred HHHH-hcCCceEEEEecccccC
Q 017792 129 DTLI-RSGSVDVVVVDSVAALV 149 (366)
Q Consensus 129 ~~~~-~~~~~~lvviDsl~~l~ 149 (366)
.... .......+++|.+..+.
T Consensus 124 ~~~~~~~~~~~~~iide~d~l~ 145 (287)
T d1w5sa2 124 VDNLYVENHYLLVILDEFQSML 145 (287)
T ss_dssp HHHHHHHTCEEEEEEESTHHHH
T ss_pred HHHHHhccCccccceeEEEEec
Confidence 4333 34456677888887775
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=96.79 E-value=0.0022 Score=49.33 Aligned_cols=40 Identities=25% Similarity=0.216 Sum_probs=29.3
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHH-HHHHhhcCCeEEEEeC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHV-IAEAQRQGGYCVFIDA 94 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l-~~~~~~~gg~vl~id~ 94 (366)
+.+|+.+.|.+|+|||||..+... +......+..++++..
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~p 44 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAP 44 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEES
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeeec
Confidence 457899999999999999766543 4455555666777664
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=96.77 E-value=0.0016 Score=58.93 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE--EeCCCCCC-------HHHHhhcccccCcceecCCC---CHHH-
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF--IDAEHALD-------PSLAETIGVKTENLLLAQPD---CGEQ- 123 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~--id~e~~~~-------~~~~~~ig~~~~~~~~~~~~---~~e~- 123 (366)
+.-+++|.|+||+|||||...++..+...+.++.. +|....+. ..+...++..+ +.++.... ....
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~-~~~ir~~~~~~~~gg~ 128 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDR-NAFIRPSPSSGTLGGV 128 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCT-TEEEECCCCCSSHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhccc-ceeeccccccccccch
Confidence 45679999999999999999999888776665444 44332221 22232333222 33332221 1222
Q ss_pred --HHHHHHHHHhcCCceEEEEecccccC
Q 017792 124 --ALSLVDTLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 124 --~l~~~~~~~~~~~~~lvviDsl~~l~ 149 (366)
.......++.....++++|..+....
T Consensus 129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq 156 (323)
T d2qm8a1 129 AAKTRETMLLCEAAGFDVILVETVGVGQ 156 (323)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSS
T ss_pred hHHHHHHHHhhccCCCCeEEEeehhhhh
Confidence 22222333445578999999987654
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.73 E-value=0.0017 Score=58.21 Aligned_cols=86 Identities=21% Similarity=0.183 Sum_probs=48.9
Q ss_pred HHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCeEEEEeCCCCCC-HHHHhhcccccCcceecCCCCHHH
Q 017792 47 DIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQ 123 (366)
Q Consensus 47 D~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~--gg~vl~id~e~~~~-~~~~~~ig~~~~~~~~~~~~~~e~ 123 (366)
...|+.-+-..-=+++|+|++|||||||+..+...+... +..|..++.+.-.. ......-+.. .+.-+......+.
T Consensus 69 ~~fl~~~~~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~~~~~l~~~~~~-~~~g~Pes~D~~~ 147 (308)
T d1sq5a_ 69 EQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHR 147 (308)
T ss_dssp HHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHH
T ss_pred HHHhcccCCCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeECCchHHHHhcCC-ccCCchHhhhHHH
Confidence 344552222233499999999999999999999888643 45677777665432 2222221211 1111112235666
Q ss_pred HHHHHHHHHh
Q 017792 124 ALSLVDTLIR 133 (366)
Q Consensus 124 ~l~~~~~~~~ 133 (366)
+...+..+..
T Consensus 148 L~~~L~~lk~ 157 (308)
T d1sq5a_ 148 LVKFVSDLKS 157 (308)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHc
Confidence 6776666543
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.73 E-value=0.00044 Score=57.34 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=24.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
++.|.|||||||||.|..++..+ | ..++++
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~---g--~~~i~~ 32 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY---G--YTHLSA 32 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---C--CEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CceEcH
Confidence 68999999999999999998765 2 356654
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.72 E-value=0.00093 Score=56.99 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=26.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
+++|.|++|||||||+..+..... .+..+..++.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~-~~~~~~ivn~ 35 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNL 35 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEEC
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh-hCCeEEEEec
Confidence 689999999999999999986554 4455666653
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.71 E-value=0.00044 Score=56.55 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+.|.|||||||||+|..++..+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999887766
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.69 E-value=0.0079 Score=50.15 Aligned_cols=73 Identities=16% Similarity=0.097 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC---eEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGG---YCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg---~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
.+.-+.++||+|+||||++..++..+..... .++++..+.. .-.++++.+....+..
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~--------------------~I~Id~IR~i~~~~~~ 73 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE--------------------NIGIDDIRTIKDFLNY 73 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS--------------------CBCHHHHHHHHHHHTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcC--------------------CCCHHHHHHHHHHHhh
Confidence 3567999999999999999999987654321 3555554311 1134555554433322
Q ss_pred ---cCCceEEEEecccccC
Q 017792 134 ---SGSVDVVVVDSVAALV 149 (366)
Q Consensus 134 ---~~~~~lvviDsl~~l~ 149 (366)
.+..++++||.+..|-
T Consensus 74 ~~~~~~~KviIId~ad~l~ 92 (198)
T d2gnoa2 74 SPELYTRKYVIVHDCERMT 92 (198)
T ss_dssp CCSSSSSEEEEETTGGGBC
T ss_pred CcccCCCEEEEEeCccccc
Confidence 3467899999998886
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.67 E-value=0.00046 Score=58.26 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
+++|.|++|||||||+..++..+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~ 28 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQ 28 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhch
Confidence 6899999999999999999887643
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.66 E-value=0.00052 Score=57.80 Aligned_cols=30 Identities=33% Similarity=0.515 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
+++|.|||||||||.+..++..+. ..|+++
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g-----l~~iSt 34 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ-----WHLLDS 34 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT-----CEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcEECH
Confidence 899999999999999999988772 356664
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.66 E-value=0.00048 Score=59.22 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 017792 61 VEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
+.++||||+||||+++.++..+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999988763
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.63 E-value=0.00091 Score=60.69 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
+.-+++|.|+||+|||||...++..+...|.+|..+..+
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavD 91 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 91 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCC
Confidence 466899999999999999999999888877766555443
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.62 E-value=0.00061 Score=55.99 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+.|.|||||||||++..++..+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998776
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.59 E-value=0.00059 Score=61.45 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=26.7
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
.|++ -++++||||||||.||++++..+. ...+.++.
T Consensus 47 ~~~~-~iLl~GPpG~GKT~lAkalA~~~~---~~~~~i~~ 82 (309)
T d1ofha_ 47 VTPK-NILMIGPTGVGKTEIARRLAKLAN---APFIKVEA 82 (309)
T ss_dssp CCCC-CEEEECCTTSSHHHHHHHHHHHHT---CCEEEEEG
T ss_pred CCCc-eEEEECCCCCCHHHHHHHHhhccc---cchhcccc
Confidence 3454 456899999999999999988763 44555554
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.58 E-value=0.00061 Score=55.90 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+.|.|||||||||+|..++..+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999998776
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.57 E-value=0.0006 Score=56.42 Aligned_cols=23 Identities=35% Similarity=0.274 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+.|.|||||||||+|..++..+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999999887665
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.56 E-value=0.00043 Score=61.62 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
+++|+|++||||||++..+...+...+-.++.++.+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Ds 42 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDA 42 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCC
Confidence 8999999999999999999998887777777887664
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.55 E-value=0.00075 Score=57.04 Aligned_cols=27 Identities=19% Similarity=0.425 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
.|.++.|+||+|+|||||+..++....
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 489999999999999999988877653
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.53 E-value=0.0083 Score=55.66 Aligned_cols=119 Identities=16% Similarity=0.227 Sum_probs=67.3
Q ss_pred HHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHH
Q 017792 45 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQA 124 (366)
Q Consensus 45 ~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~ 124 (366)
.|.+++. .+..++.|.||+||||||++..++..+......++ +-|++.+..+. ++....+.-....+ .
T Consensus 149 ~l~~l~~----~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~--tiEdPiE~~~~---~~~q~~v~~~~~~~---~ 216 (401)
T d1p9ra_ 149 NFRRLIK----RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNIL--TVEDPIEFDID---GIGQTQVNPRVDMT---F 216 (401)
T ss_dssp HHHHHHT----SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEE--EEESSCCSCCS---SSEEEECBGGGTBC---H
T ss_pred HHHHHHh----hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEE--EeccCcccccC---CCCeeeecCCcCCC---H
Confidence 3555665 34459999999999999999999888765555544 44444432110 11000000011122 2
Q ss_pred HHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCccccc
Q 017792 125 LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLST 200 (366)
Q Consensus 125 l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~~~~~~~ 200 (366)
...+...++ .++++++|..+.... -|++ ++ .+...|-.|+.+-|..+..+.
T Consensus 217 ~~~l~~~lR-~dPDvi~igEiRd~~----------------ta~~---a~-----~aa~tGhlV~tTlHa~~a~~~ 267 (401)
T d1p9ra_ 217 ARGLRAILR-QDPDVVMVGEIRDLE----------------TAQI---AV-----QASLTGHLVMSTLHTNTAVGA 267 (401)
T ss_dssp HHHHHHHGG-GCCSEEEESCCCSHH----------------HHHH---HH-----HHHHTTCEEEEEECCSSSHHH
T ss_pred HHHHHHHHh-hcCCEEEecCcCChH----------------HHHH---HH-----HHHhcCCeEEEEeccCchHhh
Confidence 333444443 479999987775432 1111 11 113469999999998876543
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.44 E-value=0.00088 Score=56.57 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
++.|-|||||||||.|..++..+. ..|+++
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg-----~~~ist 34 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG-----FTYLDT 34 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC-----CEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcEECH
Confidence 467889999999999999988872 356664
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.43 E-value=0.0007 Score=56.32 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=24.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
--+.|+|||||||||++..++..+ + ..+++.
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~---g--~~~is~ 37 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF---E--LKHLSS 37 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB---C--CEEEEH
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH---C--CeEEcH
Confidence 357788999999999999987754 2 456665
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.42 E-value=0.00086 Score=54.50 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=23.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
.+.|+|++||||||++..++..+ | +-|+|.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L---g--~~~id~ 33 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL---G--YEFVDT 33 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH---T--CEEEEH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---C--CCEEeh
Confidence 35688999999999999998766 2 246764
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.41 E-value=0.00086 Score=54.84 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+.|.|||||||||.+..++..+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999987655
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.38 E-value=0.002 Score=53.60 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=30.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
+|+|.|..||||||++..+...+...|-.|+++...
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P 37 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP 37 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence 688999999999999999999888777777776543
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.38 E-value=0.00098 Score=53.78 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+.|+|+|||||||+++.++..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6678999999999999998877
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.38 E-value=0.00092 Score=57.00 Aligned_cols=48 Identities=25% Similarity=0.190 Sum_probs=31.4
Q ss_pred HHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCeEEEEeC
Q 017792 44 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDA 94 (366)
Q Consensus 44 ~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~--gg~vl~id~ 94 (366)
..|-.++. .+-.+ .+.|+||||+||||+++.++..+... +..++.++.
T Consensus 34 ~~l~~~i~-~~~~~--~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n~ 83 (231)
T d1iqpa2 34 KRLKHYVK-TGSMP--HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 83 (231)
T ss_dssp HHHHHHHH-HTCCC--EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred HHHHHHHH-cCCCC--eEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEec
Confidence 34555554 33222 47899999999999999999877532 223455553
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.38 E-value=0.00097 Score=54.71 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=22.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 61 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
+.|.|||||||||++..++..+ + +.+++.
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~----g-~~~i~~ 33 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF----H-AAHLAT 33 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH----C-CEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHh----C-CceEec
Confidence 5688999999999999997765 2 356664
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=96.34 E-value=0.0047 Score=54.29 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=31.7
Q ss_pred cCCCCEEEEEcCCCCcHHH-HHHHHHHHHhhcCCeEEEEeC
Q 017792 55 LPKGRVVEIYGPEASGKTT-LALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTT-L~~~l~~~~~~~gg~vl~id~ 94 (366)
+.+|+.+.|.+|+|||||+ ++..++..+...+..++|+..
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi~P 46 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAP 46 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEEES
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 5689999999999999996 555666666666788888864
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.32 E-value=0.0011 Score=53.48 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+.|+|++||||||+++.++..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4466999999999999998766
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=96.29 E-value=0.0084 Score=47.22 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=53.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC--H-HHHhhcccccCcceecCCCCHHHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-SLAETIGVKTENLLLAQPDCGEQALSLVDTLI 132 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~--~-~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~ 132 (366)
..|.+..|+||=.|||||-+++.+..+...+..|+.+....... . ....+.|...+-+.+. +..++...+
T Consensus 5 ~~G~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~~~~D~Ry~~~~i~sh~g~~~~a~~~~---~~~~~~~~~---- 77 (141)
T d1xx6a1 5 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIK---NSREILKYF---- 77 (141)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEES---SSTHHHHHC----
T ss_pred cceeEEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEEeccccccccceeeecccceEEEEEec---chhhhhhhh----
Confidence 36899999999999999999999988888888888887543211 0 1122223222212221 122332221
Q ss_pred hcCCceEEEEecccccC
Q 017792 133 RSGSVDVVVVDSVAALV 149 (366)
Q Consensus 133 ~~~~~~lvviDsl~~l~ 149 (366)
....++|.||..+.+.
T Consensus 78 -~~~~dvI~IDE~QFf~ 93 (141)
T d1xx6a1 78 -EEDTEVIAIDEVQFFD 93 (141)
T ss_dssp -CTTCSEEEECSGGGSC
T ss_pred -cccccEEEEeehhhcc
Confidence 2368999999998764
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.27 E-value=0.0022 Score=54.50 Aligned_cols=38 Identities=26% Similarity=0.318 Sum_probs=29.0
Q ss_pred hHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 43 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 43 ~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
...|-.++. .+-.+. +.|+||+|+||||+++.++..+.
T Consensus 21 ~~~l~~~i~-~~~~~~--lll~Gp~G~GKTtl~~~i~~~l~ 58 (237)
T d1sxjd2 21 VTVLKKTLK-SANLPH--MLFYGPPGTGKTSTILALTKELY 58 (237)
T ss_dssp HHHHHHHTT-CTTCCC--EEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCCe--EEEECCCCCChHHHHHHHHHHHc
Confidence 456767776 333222 78999999999999999998864
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=96.24 E-value=0.0051 Score=53.61 Aligned_cols=53 Identities=19% Similarity=0.225 Sum_probs=36.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTE 111 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~ 111 (366)
..+++.+.|.-|+||||++..++..+...|.+|+++|.+.. ......+|....
T Consensus 19 ~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~--~~l~~~lg~~~~ 71 (279)
T d1ihua2 19 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA--AHLSMTLNGSLN 71 (279)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC-------------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC--CChHHHhCCccc
Confidence 35688888999999999999999999999999999999843 233334454433
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.24 E-value=0.0023 Score=55.17 Aligned_cols=43 Identities=16% Similarity=0.280 Sum_probs=31.4
Q ss_pred HHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 45 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 45 ~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
+|+++.. ..++++.|+||+|+|||+|+.+++... +....|++.
T Consensus 20 el~~l~~----~~~~~i~i~G~~G~GKTsLl~~~~~~~---~~~~~~i~~ 62 (283)
T d2fnaa2 20 EIEKLKG----LRAPITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDL 62 (283)
T ss_dssp HHHHHHH----TCSSEEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEG
T ss_pred HHHHHHh----ccCCEEEEEcCCCCcHHHHHHHHHHHC---CCCeEEEEe
Confidence 4555554 256799999999999999999987655 344566654
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.20 E-value=0.0019 Score=57.34 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=27.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEeCC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAE 95 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~---gg~vl~id~e 95 (366)
=+++|.|++|||||||+..+...+... .-.|+.++.+
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~D 67 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASID 67 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGG
T ss_pred EEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccC
Confidence 488999999999999999887776442 2246666644
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.12 E-value=0.0015 Score=54.20 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
.++|+||+|||||||+..++....
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHhCC
Confidence 377999999999999998877653
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.12 E-value=0.0023 Score=54.13 Aligned_cols=37 Identities=27% Similarity=0.476 Sum_probs=26.9
Q ss_pred HHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 44 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 44 ~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
..|...+..|-+|. +.|+||+|+||||++..++..+.
T Consensus 24 ~~L~~~i~~~~~~~---lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 24 TTVRKFVDEGKLPH---LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp HHHHHHHHTTCCCC---EEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCe---EEEECCCCCChhHHHHHHHHHhh
Confidence 34555554234432 77999999999999999998764
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.07 E-value=0.0017 Score=55.09 Aligned_cols=48 Identities=21% Similarity=0.074 Sum_probs=31.2
Q ss_pred HHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC--CeEEEEeC
Q 017792 44 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG--GYCVFIDA 94 (366)
Q Consensus 44 ~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~g--g~vl~id~ 94 (366)
..|-.++. .|-.+. +.|+||+|+||||++..++..+.... ..++.++.
T Consensus 25 ~~L~~~~~-~~~~~~--~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~ 74 (224)
T d1sxjb2 25 DRLQQIAK-DGNMPH--MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA 74 (224)
T ss_dssp HHHHHHHH-SCCCCC--EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT
T ss_pred HHHHHHHH-cCCCCe--EEEECCCCCCchhhHHHHHHHHhccccccccccccc
Confidence 44555554 332222 77999999999999999998775331 23445543
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.06 E-value=0.0035 Score=53.03 Aligned_cols=39 Identities=26% Similarity=0.481 Sum_probs=34.7
Q ss_pred CCEEEEE-cCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 58 GRVVEIY-GPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 58 G~ii~I~-G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
|+++.++ +..|+||||++..++..+...|.+|+++|.+.
T Consensus 2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~ 41 (237)
T d1g3qa_ 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 6788888 66999999999999999998888999999763
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=96.04 E-value=0.0055 Score=49.92 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|++.+|||||+.++++
T Consensus 8 IaiiG~~naGKSTL~n~L~~ 27 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTE 27 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHT
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 89999999999999998864
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.03 E-value=0.0017 Score=53.60 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
-++|+||+|||||||+..++....
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred eEEEECCCCCCHHHHHHHHHHhCC
Confidence 478999999999999999877654
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.0022 Score=52.70 Aligned_cols=25 Identities=12% Similarity=0.347 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.+++.|+||+|+|||||+..++...
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhC
Confidence 3689999999999999998876544
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=95.93 E-value=0.0031 Score=54.86 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=34.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
+.++|+|.-|+||||++..++..+...|.+|+.||.+.
T Consensus 2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 39 (269)
T d1cp2a_ 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 36789999999999999999999999999999999874
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.90 E-value=0.0019 Score=53.31 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHV 78 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l 78 (366)
+++|+|++||||||+|..+
T Consensus 5 IIgitG~~gSGKstva~~l 23 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALL 23 (191)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999998866
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.87 E-value=0.0019 Score=53.38 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|++|+|||||+..+.+
T Consensus 26 I~lvG~~n~GKSTLin~L~g 45 (195)
T d1svia_ 26 IALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHhcC
Confidence 99999999999999999974
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.86 E-value=0.0037 Score=53.30 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=29.8
Q ss_pred cCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 40 STGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 40 ~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
..|++.|-..|. |+.++++|+||+|||||++.+...
T Consensus 83 ~~g~~~L~~~l~------~kt~~~~G~SGVGKSTLiN~L~~~ 118 (225)
T d1u0la2 83 GMGIEELKEYLK------GKISTMAGLSGVGKSSLLNAINPG 118 (225)
T ss_dssp CTTHHHHHHHHS------SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred chhHhhHHHHhc------CCeEEEECCCCCCHHHHHHhhcch
Confidence 367788877774 579999999999999999888654
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.029 Score=48.89 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=52.5
Q ss_pred hHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-------CCeEEEEeCCCCCCHHHHhhcccccCccee
Q 017792 43 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-------GGYCVFIDAEHALDPSLAETIGVKTENLLL 115 (366)
Q Consensus 43 ~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~-------gg~vl~id~e~~~~~~~~~~ig~~~~~~~~ 115 (366)
+..|-.+|. . ....-+.|+||||+|||+++..++..+... +..++.++. ..+.-
T Consensus 27 i~~l~~iL~-r--~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~----------------~~lia 87 (268)
T d1r6bx2 27 LERAIQVLC-R--RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI----------------GSLLA 87 (268)
T ss_dssp HHHHHHHHT-S--SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC----------------C---C
T ss_pred HHHHHHHHh-c--CccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeee----------------chHhc
Confidence 444545554 1 223467899999999999999998877642 122222222 12111
Q ss_pred --cCCCCHHHHHHHHHHHHhcCCceEEEEecccccCC
Q 017792 116 --AQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVP 150 (366)
Q Consensus 116 --~~~~~~e~~l~~~~~~~~~~~~~lvviDsl~~l~~ 150 (366)
...-..++.+..+...+......+++||.+..++.
T Consensus 88 g~~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~ 124 (268)
T d1r6bx2 88 GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIG 124 (268)
T ss_dssp CCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTT
T ss_pred cCccchhHHHHHHHHHHHhhccCCceEEecchHHHhc
Confidence 01223455555444444455567889999999984
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=95.78 E-value=0.0034 Score=52.47 Aligned_cols=45 Identities=24% Similarity=0.363 Sum_probs=36.1
Q ss_pred CCCcccCChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 35 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 35 ~~~~i~TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.++.++. +..|=..|. |.|+-..+.|+||+++|||+|+..++..+
T Consensus 33 ~i~~~~F-l~~l~~~l~--~~PKkn~i~~~GP~~TGKS~f~~sl~~~l 77 (205)
T d1tuea_ 33 QIEFITF-LGALKSFLK--GTPKKNCLVFCGPANTGKSYFGMSFIHFI 77 (205)
T ss_dssp TCCHHHH-HHHHHHHHH--TCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CccHHHH-HHHHHHHHc--CCCCceEEEEECCCCccHHHHHHHHHHHh
Confidence 4555543 456666676 78999999999999999999999998876
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=95.77 E-value=0.0047 Score=51.40 Aligned_cols=35 Identities=17% Similarity=0.148 Sum_probs=32.0
Q ss_pred EEEEEcCC-CCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 60 VVEIYGPE-ASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 60 ii~I~G~~-GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
.+-|+|.. |+||||++..++..+...|.+|++++.
T Consensus 3 ~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~ 38 (224)
T d1byia_ 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECc
Confidence 56789995 999999999999999999999999985
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.77 E-value=0.0031 Score=50.78 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=26.1
Q ss_pred cCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 55 LPKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 55 i~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
.++|.++.|.|+=|||||||++.++..+.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 36899999999999999999999988774
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.76 E-value=0.0028 Score=49.86 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~ 81 (366)
++|+|++|+|||||+..++..
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999998654
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.61 E-value=0.0066 Score=51.13 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=32.7
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 60 VVEIY-GPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 60 ii~I~-G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
++.|+ |..|+||||++..++..+...|.+|+++|.+..
T Consensus 3 vIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~ 41 (232)
T d1hyqa_ 3 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT 41 (232)
T ss_dssp EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 45555 889999999999999999998999999998643
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=95.56 E-value=0.011 Score=49.43 Aligned_cols=89 Identities=16% Similarity=0.017 Sum_probs=45.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhc--CCeEEEEeCCCCCCHHHHhhcccccC---------cceecCCCCHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDAEHALDPSLAETIGVKTE---------NLLLAQPDCGEQALSLVD 129 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~~~~--gg~vl~id~e~~~~~~~~~~ig~~~~---------~~~~~~~~~~e~~l~~~~ 129 (366)
++|+|..++|||||+.++....... .+.+-+....+..+.++.+.+-++.. ++.+.+...-.++...+.
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~~~~~ 85 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMI 85 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhHHHHH
Confidence 7899999999999999987654322 12111111111112233333333221 112222211133333333
Q ss_pred HHHhcCCceEEEEecccccC
Q 017792 130 TLIRSGSVDVVVVDSVAALV 149 (366)
Q Consensus 130 ~~~~~~~~~lvviDsl~~l~ 149 (366)
.-++..+.-++|||....+.
T Consensus 86 ~~~~~aD~avlVvda~~Gv~ 105 (204)
T d2c78a3 86 TGAAQMDGAILVVSAADGPM 105 (204)
T ss_dssp HHHTTCSSEEEEEETTTCCC
T ss_pred HHHHHCCEEEEEEECCCCCc
Confidence 44455678899999865554
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=95.50 E-value=0.016 Score=49.49 Aligned_cols=72 Identities=10% Similarity=0.045 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHH----HhhcccccCccee-cCCCCHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSL----AETIGVKTENLLL-AQPDCGEQALSLV 128 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~----~~~ig~~~~~~~~-~~~~~~e~~l~~~ 128 (366)
.-....|+|..|||||-.+..++..+...|..++++-.+..+.+.. .++++....++.+ ....+..+-....
T Consensus 75 ~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~ 151 (233)
T d2eyqa3 75 LAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQIL 151 (233)
T ss_dssp SCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHH
T ss_pred CccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHH
Confidence 3457899999999999999999999988899999988766554433 3334433344443 3444554443333
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=95.48 E-value=0.0081 Score=52.49 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=35.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 97 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~ 97 (366)
+++.+.|.-|+||||++..++..+...|.+|+.+|.+..
T Consensus 9 ~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~ 47 (296)
T d1ihua1 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA 47 (296)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred eEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 588899999999999999999999999999999998743
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=95.46 E-value=0.0062 Score=56.59 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=32.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
-+.|+|++|||||+++..++..+...+..++.+|...
T Consensus 52 H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~kg 88 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNG 88 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred eEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCh
Confidence 3899999999999999988888888888888898754
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.45 E-value=0.00062 Score=55.87 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+++|+|+|||||||++..+...+
T Consensus 26 ~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 26 VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 78899999999999988887655
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=95.41 E-value=0.013 Score=52.56 Aligned_cols=83 Identities=18% Similarity=0.219 Sum_probs=46.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH-HHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCce
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-SLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVD 138 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~-~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~ 138 (366)
++.++||+|+|||.+++.++..+...+...+.++..+..+. ...+-+|-.+...- .+.-..+...++.....
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~~~~~~~~L~g~~~gyvG-------~~~~~~l~~~~~~~p~~ 127 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVG-------YEEGGQLTEAVRRRPYS 127 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC---------------------CHHHHHHHCSSE
T ss_pred EEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccccchhhhhhcCCCCCCcC-------cccCChHHHHHHhCCCc
Confidence 67899999999999999999888544456677776443332 22222332221111 11001122333345678
Q ss_pred EEEEecccccC
Q 017792 139 VVVVDSVAALV 149 (366)
Q Consensus 139 lvviDsl~~l~ 149 (366)
++++|.+...-
T Consensus 128 Vvl~DEieK~~ 138 (315)
T d1qvra3 128 VILFDEIEKAH 138 (315)
T ss_dssp EEEESSGGGSC
T ss_pred EEEEehHhhcC
Confidence 99999998775
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=95.39 E-value=0.0069 Score=53.25 Aligned_cols=38 Identities=24% Similarity=0.424 Sum_probs=34.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
+.++|.|.-|+||||++.+++..+...|.+|+.||.+.
T Consensus 3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~Dp 40 (289)
T d2afhe1 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCC
Confidence 35678999999999999999999998899999999874
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.38 E-value=0.0044 Score=52.34 Aligned_cols=28 Identities=29% Similarity=0.410 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
+|.+++|-|+.||||||++..++..+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 7999999999999999999988776653
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.25 E-value=0.0056 Score=56.22 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
.+.+++|+|+||||||+++-.+..
T Consensus 24 ~~~l~~i~G~NGsGKS~ileAi~~ 47 (427)
T d1w1wa_ 24 ESNFTSIIGPNGSGKSNMMDAISF 47 (427)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345999999999999999888764
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.25 E-value=0.0051 Score=48.23 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|++++|||||+..+..
T Consensus 3 I~liG~~nvGKSSLln~l~~ 22 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKN 22 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 67999999999999998865
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.24 E-value=0.0051 Score=48.61 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|++|+|||||+..++.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~ 27 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQV 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999998865
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.17 E-value=0.0055 Score=52.09 Aligned_cols=35 Identities=34% Similarity=0.438 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 96 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~ 96 (366)
++.|.|.-|||||||+++++.. ..+.++..|-.|.
T Consensus 5 v~iitGFLGaGKTTll~~lL~~--~~~~riaVI~Ne~ 39 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEF 39 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS--CCCCCEEEECSSC
T ss_pred EEEEeeCCCCCHHHHHHHHHhc--CCCCcEEEEEecc
Confidence 7899999999999999988764 3455677776553
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.04 E-value=0.0036 Score=56.53 Aligned_cols=80 Identities=15% Similarity=0.206 Sum_probs=45.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCCc
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSV 137 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~ 137 (366)
+.-++|+|++|||||||+..++..+.+ ..+++.+....... +...-.+ -++......+..+++.. .+ ...+
T Consensus 166 ~~nili~G~tgSGKTT~l~al~~~i~~-~~rivtiEd~~El~--l~~~~~~--~~~~~~~~~~~~~ll~~---~l-R~~p 236 (323)
T d1g6oa_ 166 GKNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIV--FKHHKNY--TQLFFGGNITSADCLKS---CL-RMRP 236 (323)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCT-TCCEEEEESSCCCC--CSSCSSE--EEEECBTTBCHHHHHHH---HT-TSCC
T ss_pred CCCEEEEeeccccchHHHHHHhhhccc-ccceeeccchhhhh--ccccccc--ceeccccchhHHHHHHH---Hh-ccCC
Confidence 455899999999999999888776654 55667664322111 0000000 01111223355555433 33 3578
Q ss_pred eEEEEeccc
Q 017792 138 DVVVVDSVA 146 (366)
Q Consensus 138 ~lvviDsl~ 146 (366)
+.+++..+.
T Consensus 237 d~iivgEiR 245 (323)
T d1g6oa_ 237 DRIILGELR 245 (323)
T ss_dssp SEEEESCCC
T ss_pred CcccCCccC
Confidence 999887764
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.01 E-value=0.0038 Score=51.40 Aligned_cols=25 Identities=36% Similarity=0.179 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
.-+++|.|+.||||||++..+...+
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999998876544
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.00 E-value=0.0061 Score=50.90 Aligned_cols=19 Identities=42% Similarity=0.471 Sum_probs=17.0
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHV 78 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l 78 (366)
+++|+|+.||||||+|..+
T Consensus 4 iIgITG~igSGKStv~~~l 22 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLF 22 (205)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999998755
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.95 E-value=0.0087 Score=52.59 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
-++|+|+.|+|||||+-+++...-
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g 31 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTG 31 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Confidence 589999999999999999876553
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.94 E-value=0.0044 Score=54.71 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
.+++|+|||||||||++..+..
T Consensus 25 ~lnvlvG~NgsGKS~iL~Ai~~ 46 (308)
T d1e69a_ 25 RVTAIVGPNGSGKSNIIDAIKW 46 (308)
T ss_dssp SEEEEECCTTTCSTHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3999999999999999776644
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.93 E-value=0.0071 Score=48.58 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
.++|+|++|+|||||+.++++
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~ 22 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVK 22 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999999875
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.93 E-value=0.0075 Score=49.34 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=19.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
|.-++|.|++|+||||+++.++.
T Consensus 14 g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 14 GLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHHH
Confidence 56689999999999999887653
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.88 E-value=0.0067 Score=50.78 Aligned_cols=19 Identities=37% Similarity=0.469 Sum_probs=17.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHV 78 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l 78 (366)
+++|+|.+||||||++..+
T Consensus 5 iIgitG~igSGKStv~~~l 23 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAF 23 (208)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHH
Confidence 7899999999999998765
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.87 E-value=0.0054 Score=49.31 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=19.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
+.--++|+|++|+|||||+..+..
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~ 35 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKD 35 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 334578999999999999888743
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.87 E-value=0.0078 Score=49.69 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
.++|+|++++|||||+..+++.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998753
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.86 E-value=0.0071 Score=49.52 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
|.-+.|.|++|+||||+++.++.
T Consensus 15 g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 15 GVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56689999999999999988753
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=94.83 E-value=0.018 Score=52.61 Aligned_cols=84 Identities=20% Similarity=0.256 Sum_probs=44.5
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHh
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 133 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~ 133 (366)
..|++. ++++||+|+|||-|++.++..+ +...+.+|.....+ .||.-... ...+.+++......+.
T Consensus 65 ~~p~~n-iLfiGPTGvGKTElAk~LA~~~---~~~~ir~D~s~~~e------~gyvg~dv----~~~i~~l~~~~~~~v~ 130 (364)
T d1um8a_ 65 ELSKSN-ILLIGPTGSGKTLMAQTLAKHL---DIPIAISDATSLTE------AGYVGEDV----ENILTRLLQASDWNVQ 130 (364)
T ss_dssp TCCCCC-EEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGGGCC--------------C----THHHHHHHHHTTTCHH
T ss_pred cCCCcc-eeeeCCCCccHHHHHHHHHhhc---ccceeehhhhhccc------chhhHhhh----ccchhhhhhhchhHHH
Confidence 678875 5678999999999999998764 34455666433222 12211000 0011222222111233
Q ss_pred cCCceEEEEecccccCCC
Q 017792 134 SGSVDVVVVDSVAALVPK 151 (366)
Q Consensus 134 ~~~~~lvviDsl~~l~~~ 151 (366)
.....++.+|.+....+.
T Consensus 131 ~~~~~iv~lDEieK~~~~ 148 (364)
T d1um8a_ 131 KAQKGIVFIDEIDKISRL 148 (364)
T ss_dssp HHTTSEEEEETGGGC---
T ss_pred Hhhcccchhhhhhhhccc
Confidence 345678899999877653
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.72 E-value=0.0076 Score=48.34 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=19.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
+.--++|+|.+|+|||||+.++..
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEEECCCCCCHHHHHHHHhc
Confidence 334588999999999999988754
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.71 E-value=0.0094 Score=49.43 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|++|+|||||+.++...
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999988763
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.68 E-value=0.0071 Score=47.84 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
-++|+|++++|||||+.++++
T Consensus 3 kI~lvG~~nvGKSsLin~l~~ 23 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAG 23 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999988864
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.64 E-value=0.0046 Score=52.41 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++++++|-|+.||||||++..++..+
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999887655
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.63 E-value=0.0065 Score=49.16 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
-++|+|+|++|||||+..+.+
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~ 22 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTG 22 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999988864
|
| >d1ofux_ c.37.1.22 (X:) Hypothetical protein PA3008 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Bacterial cell division inhibitor SulA domain: Hypothetical protein PA3008 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.56 E-value=0.33 Score=36.40 Aligned_cols=84 Identities=21% Similarity=0.219 Sum_probs=65.3
Q ss_pred EEEEEcCCCC-cHHHHHHHHHHHHhhc--CCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHHHHHHHHhcCC
Q 017792 60 VVEIYGPEAS-GKTTLALHVIAEAQRQ--GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGS 136 (366)
Q Consensus 60 ii~I~G~~Gs-GKTTL~~~l~~~~~~~--gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~~~~~~~~~~~ 136 (366)
++++.++... |=..|+.-+...+... +..++||+....+........|++++++.+.++.+..+.+..+++.++.+.
T Consensus 4 ~~el~~~~~~~~~l~LL~P~L~~l~~~~~~rwi~wI~Pp~~p~a~~L~~~Gi~~~rll~v~~~~~~d~lwa~EqaL~sg~ 83 (119)
T d1ofux_ 4 FSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGR 83 (119)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHHTTCSSSSEEEEESCCTTSCHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTC
T ss_pred cceecccCCcHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCccCHHHHHHcCCCCCeEEEEeCCChHHHHHHHHHHHhcCC
Confidence 4556555444 4355655555555432 356999999888888888999999999999999999999999999999988
Q ss_pred ceEEEEe
Q 017792 137 VDVVVVD 143 (366)
Q Consensus 137 ~~lvviD 143 (366)
+..|+..
T Consensus 84 ~~aVl~w 90 (119)
T d1ofux_ 84 SHTVVSW 90 (119)
T ss_dssp EEEEEEC
T ss_pred ccEEEEc
Confidence 8877754
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.54 E-value=0.0089 Score=47.55 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|++|+|||||+..+..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~ 24 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNG 24 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 68999999999999988743
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=94.53 E-value=0.017 Score=50.93 Aligned_cols=37 Identities=24% Similarity=0.140 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcC----CeEEEEeCCC
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQG----GYCVFIDAEH 96 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~g----g~vl~id~e~ 96 (366)
.+.|.|++||||||.+.+-+..+...+ ..++++....
T Consensus 26 ~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t~ 66 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTN 66 (318)
T ss_dssp CEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSH
T ss_pred CEEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEeccH
Confidence 367889999999998877655443322 4678877543
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.50 E-value=0.01 Score=47.20 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|++|+|||||+.+++.
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999998864
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.49 E-value=0.0093 Score=48.22 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
+++|+|.+|+|||||+..+++
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~ 27 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLG 27 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 799999999999999988864
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.48 E-value=0.011 Score=48.02 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
|.=+.|.|++|+||||+++.++..
T Consensus 15 g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 15 GVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHc
Confidence 566899999999999998776543
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.46 E-value=0.011 Score=47.12 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|++|+|||||+.++..
T Consensus 5 i~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 67899999999999988854
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.44 E-value=0.0094 Score=56.02 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeC
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 94 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~ 94 (366)
-++++||+|||||.|++.++..+ +-+.+.+|.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l---~VPFv~~da 82 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 82 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred cEEEECCCCCCHHHHHHHHHHHh---CCCEEEeec
Confidence 48899999999999999999876 344555553
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.41 E-value=0.011 Score=47.46 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|++|+|||||+.+++.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 68999999999999998865
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.36 E-value=0.01 Score=47.68 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
+++|+|.+++|||||+..+.+
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~ 27 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLG 27 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999999864
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=94.36 E-value=0.016 Score=50.73 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhc----CCeEEEEeCC
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQ----GGYCVFIDAE 95 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~----gg~vl~id~e 95 (366)
-+.|.|+|||||||.+...+..+... ...+++++.-
T Consensus 16 ~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~t 55 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFT 55 (306)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESS
T ss_pred CEEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeCc
Confidence 36788999999999876655444322 2468888754
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.26 E-value=0.0036 Score=53.61 Aligned_cols=37 Identities=14% Similarity=0.141 Sum_probs=26.8
Q ss_pred CChHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 41 TGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 41 TG~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
.|+..|-..| +|..+.++|++|+|||||++.+.....
T Consensus 86 ~gl~~L~~~l------~~~~~vl~G~SGVGKSSLiN~L~~~~~ 122 (231)
T d1t9ha2 86 DSLADIIPHF------QDKTTVFAGQSGVGKSSLLNAISPELG 122 (231)
T ss_dssp TTCTTTGGGG------TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred hHHHHHHHhh------ccceEEEECCCCccHHHHHHhhccHhH
Confidence 4565555544 457889999999999999998876543
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.26 E-value=0.047 Score=47.48 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
-++|+|+.|+|||||+-+++...
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~ 26 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKT 26 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHc
Confidence 57899999999999999886554
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=94.23 E-value=0.021 Score=49.75 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=30.7
Q ss_pred HHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017792 46 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 46 LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
|=..|. |+.|+-..+.|+||+++|||+|+..++..+
T Consensus 93 l~~~L~-~~~~k~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 93 FLGWAT-KKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHT-TCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHc-CCCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 333466 899999999999999999999998887766
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.21 E-value=0.011 Score=50.30 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=30.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
|+-+.|++|+|+|||+.+...+......+.+++|+..-
T Consensus 58 g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~Pt 95 (237)
T d1gkub1 58 KESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPT 95 (237)
T ss_dssp TCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESC
T ss_pred CCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEecc
Confidence 56788999999999988777666666667788888753
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.21 E-value=0.013 Score=46.82 Aligned_cols=21 Identities=24% Similarity=0.548 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~ 81 (366)
++|+|++|+|||||+.+++..
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.20 E-value=0.013 Score=47.08 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|++|+|||+|+..++.
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 67999999999999988764
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.15 E-value=0.0092 Score=48.48 Aligned_cols=19 Identities=37% Similarity=0.366 Sum_probs=17.0
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVI 79 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~ 79 (366)
++|+|++++|||||++.+.
T Consensus 4 VaiiG~~nvGKSSLin~L~ 22 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVS 22 (185)
T ss_dssp EEEESSTTSSHHHHHHHSE
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999988763
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.12 E-value=0.014 Score=46.71 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~ 81 (366)
++++|++|+|||||+..++..
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988653
|
| >d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: ATP:corrinoid adenosyltransferase CobA species: Salmonella typhimurium [TaxId: 90371]
Probab=94.08 E-value=0.47 Score=37.36 Aligned_cols=121 Identities=17% Similarity=0.184 Sum_probs=71.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC----HHHHhhcccccCcc---eecCCCC-------HH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENL---LLAQPDC-------GE 122 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~----~~~~~~ig~~~~~~---~~~~~~~-------~e 122 (366)
+|-+. |+=.+|=||||-|+-++..+.-.|.+|+++.+-.... ....+..++.+... ....... ..
T Consensus 2 kG~i~-vytG~GKGKTTAAlG~alRA~G~G~rV~ivQFlKg~~~~ge~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~ 80 (157)
T d1g5ta_ 2 RGIII-VFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 80 (157)
T ss_dssp CCCEE-EEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred CcEEE-EEeCCCCCcHHHHHHHHHHHhcCCCEEEEEEEecCCcccchhhhhcccCcEEEEecCCCcccCCChHHHHHHHH
Confidence 46444 5555799999999998888888888999988765332 12223333322110 1111111 22
Q ss_pred HHHHHHHHHHhcCCceEEEEecccccCCCCccCCccchhhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecC
Q 017792 123 QALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 194 (366)
Q Consensus 123 ~~l~~~~~~~~~~~~~lvviDsl~~l~~~~~l~~~~g~~~~~~~ar~l~~~L~~L~~~l~~~~~tVI~i~h~ 194 (366)
+.++.....+.++..+++|+|.+.......-++. ..+..+.+. +-.+.-||+|.+.
T Consensus 81 ~~~~~a~~~~~~~~~dllILDEi~~Ai~~gli~~---------------~~v~~ll~~-rp~~~evVlTGr~ 136 (157)
T d1g5ta_ 81 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPL---------------EEVISALNA-RPGHQTVIITGRG 136 (157)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCH---------------HHHHHHHHT-SCTTCEEEEECSS
T ss_pred HHHHHHHHHhhcCccCEEeHHHHHHHHHcCCCCH---------------HHHHHHHHh-CCCCCEEEEECCC
Confidence 3455566667788999999999987663222221 122233321 4468899999763
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=94.07 E-value=0.12 Score=47.31 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=38.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhc-------CCeEEEEeCCCCCCHHHHhhcccccCcceecCCCCHHHHHH-HHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQ-------GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALS-LVDTL 131 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~-------gg~vl~id~e~~~~~~~~~~ig~~~~~~~~~~~~~~e~~l~-~~~~~ 131 (366)
-.+|+|+||+|||+++..++..+... +..++.+|...... |. ...-..++-+. ++..+
T Consensus 45 n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~a-------g~-------~~~g~~e~r~~~i~~~~ 110 (387)
T d1qvra2 45 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-------GA-------KYRGEFEERLKAVIQEV 110 (387)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------------------CHHHHHHHHHHHH
T ss_pred CCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhc-------cc-------CcchhHHHHHHHHHHHh
Confidence 46789999999999998887766532 23343344321110 00 00112333333 33333
Q ss_pred HhcCCceEEEEecccccCC
Q 017792 132 IRSGSVDVVVVDSVAALVP 150 (366)
Q Consensus 132 ~~~~~~~lvviDsl~~l~~ 150 (366)
.......+++||.+..++.
T Consensus 111 ~~~~~~~ilfide~h~l~~ 129 (387)
T d1qvra2 111 VQSQGEVILFIDELHTVVG 129 (387)
T ss_dssp HTTCSSEEEEECCC-----
T ss_pred ccCCCceEEEeccHHHHhc
Confidence 3333456789999999984
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.06 E-value=0.015 Score=46.41 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~ 81 (366)
++|+|++|+|||+|+.+++..
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988653
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.01 E-value=0.014 Score=46.70 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
-++|+|.+|+|||+|+..++.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999998875
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.98 E-value=0.018 Score=51.41 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=45.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCCH-HHHhhcccccCcceecCCCCH-HHHHHHHHHHHhcCCc
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-SLAETIGVKTENLLLAQPDCG-EQALSLVDTLIRSGSV 137 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~~-~~~~~ig~~~~~~~~~~~~~~-e~~l~~~~~~~~~~~~ 137 (366)
.++++||+|+|||.|+++++..+ +...+.+|.-...+. ...+-+|-. +..+ ...-..+...+.....
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l---~~~~i~~d~s~~~~~~~~~~l~g~~--------~gy~g~~~~~~l~~~~~~~~~ 122 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGAP--------PGYVGFDQGGLLTDAVIKHPH 122 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCSSSSCCSSSCCCC--------SCSHHHHHTTHHHHHHHHCSS
T ss_pred EEEEECCCcchhHHHHHHHHhhc---cCCeeEeccccccchhhhhhhcccC--------CCccccccCChhhHHHHhCcc
Confidence 67899999999999999998876 345566664322211 111112211 1111 1111122223444567
Q ss_pred eEEEEecccccC
Q 017792 138 DVVVVDSVAALV 149 (366)
Q Consensus 138 ~lvviDsl~~l~ 149 (366)
.++.+|.+....
T Consensus 123 ~vvl~DeieKa~ 134 (315)
T d1r6bx3 123 AVLLLDEIEKAH 134 (315)
T ss_dssp EEEEEETGGGSC
T ss_pred chhhhccccccc
Confidence 899999998775
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=93.94 E-value=0.02 Score=52.16 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhh----cCCeEEEEe
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQR----QGGYCVFID 93 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~----~gg~vl~id 93 (366)
.+.++.|.|+||+||||++..++..+.. .+.+++...
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~A 202 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA 202 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEB
T ss_pred cCCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEec
Confidence 3679999999999999998777665543 233554444
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.92 E-value=0.015 Score=47.27 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|++|+|||||+..++.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 67999999999999888753
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.90 E-value=0.016 Score=46.08 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~ 81 (366)
++|+|++|+|||+|+.+++..
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999988653
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.87 E-value=0.017 Score=46.54 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|++|+|||||+..+..
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999988865
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.85 E-value=0.017 Score=47.77 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=31.2
Q ss_pred HHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 44 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 44 ~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
..++.++. | +-+.|.+|+|||||+.+...+......+++++|+...
T Consensus 32 ~ai~~l~~-~-----~~~il~apTGsGKT~~a~l~i~~~~~~~~~vl~l~P~ 77 (202)
T d2p6ra3 32 EAVEKVFS-G-----KNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPL 77 (202)
T ss_dssp HHHHHHTT-C-----SCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHHc-C-----CCEEEEcCCCCchhHHHHHHHHHHhhccCcceeeccc
Confidence 44666665 3 3467999999999987654444444456778888643
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.83 E-value=0.019 Score=45.89 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=18.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVI 79 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~ 79 (366)
=-++|+|++|+|||||+..+.
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~ 37 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLA 37 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 358899999999999988774
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.82 E-value=0.016 Score=46.29 Aligned_cols=20 Identities=30% Similarity=0.692 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|.+|+|||||+.+++.
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67999999999999888764
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.81 E-value=0.017 Score=45.99 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|.+|+|||+|+.+++.
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998865
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.75 E-value=0.017 Score=45.94 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
-++|+|++|+|||||+.+++.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998865
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.75 E-value=0.017 Score=46.20 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|++|+|||||+.+++.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998875
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.75 E-value=0.015 Score=47.10 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
-++|+|++|+|||||+..+++
T Consensus 10 kV~iiG~~~~GKSTLin~l~~ 30 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILN 30 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 378999999999999988764
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.75 E-value=0.018 Score=46.72 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|.+|+|||||+..++.
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999988864
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.74 E-value=0.018 Score=46.01 Aligned_cols=20 Identities=25% Similarity=0.634 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|++|+|||+|+.+++.
T Consensus 5 i~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67999999999999998875
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.73 E-value=0.018 Score=46.20 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|++|+|||||+.+++.
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999988865
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.66 E-value=0.019 Score=45.46 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~ 81 (366)
++|+|++|+|||||+.+++..
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999988653
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.64 E-value=0.019 Score=45.69 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++++|++|+|||||+.+++.
T Consensus 5 i~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999988864
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=93.63 E-value=0.0087 Score=53.77 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
=+.|.|+||+|||||++.++..+.
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCC
Confidence 378999999999999999998764
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.56 E-value=0.019 Score=45.97 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|.+|+|||||+.+++.
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998864
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.55 E-value=0.019 Score=47.09 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|++|+|||||+.+++.
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 78999999999999998874
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.52 E-value=0.07 Score=46.20 Aligned_cols=40 Identities=25% Similarity=0.222 Sum_probs=33.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCCC
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD 99 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~~ 99 (366)
...|.|..|||||-.+..++..+...|..|++.-.+....
T Consensus 106 ~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~Pt~~La 145 (264)
T d1gm5a3 106 NRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILA 145 (264)
T ss_dssp CCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHH
T ss_pred eeeeeccccccccHHHHHHHHHHHhcccceeEEeehHhhh
Confidence 4689999999999999999988888899999987665444
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.49 E-value=0.021 Score=45.44 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|.+|+|||||+..++.
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999998865
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.45 E-value=0.021 Score=45.89 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
-++|+|.+|+|||+|+.+++.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999988764
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.44 E-value=0.022 Score=45.48 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~ 81 (366)
++++|.+|+|||+|+.+++..
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999988753
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.44 E-value=0.014 Score=47.20 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVI 79 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~ 79 (366)
++|+|.+++|||||+..+.
T Consensus 4 VaivG~~nvGKSTLin~L~ 22 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMT 22 (180)
T ss_dssp EEEECCGGGCHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999988874
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.44 E-value=0.021 Score=45.19 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|.+|+|||+|+.+++.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999998865
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.38 E-value=0.022 Score=45.86 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~ 81 (366)
++|+|++|+|||+|+.+++..
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 678999999999999888653
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=93.35 E-value=0.022 Score=48.23 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
.+++|.|+.||||||++..+..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999888754
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.33 E-value=0.02 Score=48.41 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 59 RVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
.+++|-|.-||||||++..++..+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4899999999999999999987664
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.29 E-value=0.024 Score=45.24 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|++|+|||+|+.+++.
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998864
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.25 E-value=0.024 Score=45.13 Aligned_cols=21 Identities=24% Similarity=0.567 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~ 81 (366)
++|+|++|+|||+|+.+++..
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 678999999999999988654
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.20 E-value=0.023 Score=45.30 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|++|+|||+|+.++..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~ 23 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGG 23 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhC
Confidence 67999999999999988754
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.05 E-value=0.013 Score=47.07 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
-++|+|++++|||||++++..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~ 38 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTN 38 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999887743
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.04 E-value=0.028 Score=44.71 Aligned_cols=21 Identities=19% Similarity=0.483 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~ 81 (366)
++|+|.+|+|||+|+.+++..
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999988653
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.03 E-value=0.028 Score=45.24 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++++|.+|+|||||+.++..
T Consensus 10 i~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998865
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.01 E-value=0.0078 Score=47.53 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~ 81 (366)
++|+|++++|||||+..+.+.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999998764
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.00 E-value=0.028 Score=44.91 Aligned_cols=20 Identities=20% Similarity=0.466 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++++|++|+|||+|+..++.
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 56889999999999998875
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.99 E-value=0.028 Score=44.82 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|.+|+|||||+.+++.
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 7 VIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999998864
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.86 E-value=0.016 Score=46.49 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~ 80 (366)
-++|+|++|+|||||+.+++.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 477999999999999988753
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.83 E-value=0.029 Score=45.36 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=20.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
|+.=-++|+|.+|+|||+|+.+++.
T Consensus 3 p~~iKivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 3 PQAIKCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHHh
Confidence 4444588999999999999998865
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.78 E-value=0.019 Score=46.42 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=20.1
Q ss_pred CcCCCCEEEEEcCCCCcHHHHHHHH
Q 017792 54 GLPKGRVVEIYGPEASGKTTLALHV 78 (366)
Q Consensus 54 Gi~~G~ii~I~G~~GsGKTTL~~~l 78 (366)
|-.+-=-++|+|++|+|||||+.++
T Consensus 13 ~~~k~~KI~lvG~~~vGKTsLi~~l 37 (182)
T d1moza_ 13 GSNKELRILILGLDGAGKTTILYRL 37 (182)
T ss_dssp TCSSCEEEEEEEETTSSHHHHHHHT
T ss_pred CCCceEEEEEECCCCCCHHHHHHHH
Confidence 3444456889999999999998876
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.75 E-value=0.024 Score=49.00 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|.+|+|||||++.+++.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5889999999999999999763
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.58 E-value=0.032 Score=44.65 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|.+|+|||+|+..++.
T Consensus 6 v~lvG~~~vGKTsLi~~~~~ 25 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAG 25 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999888754
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.33 E-value=0.034 Score=45.22 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVI 79 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~ 79 (366)
++|+|.+|+|||||+.++.
T Consensus 5 ivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6799999999999999983
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.28 E-value=0.037 Score=44.85 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|.+|+|||+|+.+++.
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 78999999999999988764
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.21 E-value=0.041 Score=44.37 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++++|++|+|||||+.+++..
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999988653
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.17 E-value=0.039 Score=44.91 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~ 81 (366)
++|+|++|+|||+|+.+++..
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999888653
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.12 E-value=0.04 Score=44.44 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~ 81 (366)
++|+|.+|+|||+|+..++..
T Consensus 5 ivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999888653
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.08 E-value=0.023 Score=45.51 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=8.3
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|.+|+|||||+..++.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999988864
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.02 E-value=0.02 Score=45.81 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=17.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~ 81 (366)
++|+|++|+|||+|+.+++..
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 678999999999998877543
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=91.92 E-value=0.081 Score=43.01 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=25.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH-hhcCCeEEEEeCC
Q 017792 61 VEIYGPEASGKTTLALHVIAEA-QRQGGYCVFIDAE 95 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~-~~~gg~vl~id~e 95 (366)
+.|++|+|+|||..+..++... ...++.++|+...
T Consensus 26 ~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P~ 61 (200)
T d1wp9a1 26 CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (200)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred eEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEcCc
Confidence 5688999999998766555443 3446778888643
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.62 E-value=0.053 Score=45.39 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|.+|+|||||+.++...
T Consensus 8 KilllG~~~vGKTsll~~~~~~ 29 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRIL 29 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999998543
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.57 E-value=0.064 Score=44.24 Aligned_cols=39 Identities=13% Similarity=-0.011 Sum_probs=28.3
Q ss_pred hHHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 43 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 43 ~~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
+..|-.+|. =....-+.|+|+||+|||+++..++..+..
T Consensus 31 i~~l~~iL~---r~~k~n~lLvG~pGVGKTalv~~LA~ri~~ 69 (195)
T d1jbka_ 31 IRRTIQVLQ---RRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHHHHHHHT---SSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---ccCCCCeEEEecCCcccHHHHHHHHHHHHh
Confidence 344444554 223446889999999999999999887764
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.57 E-value=0.059 Score=45.35 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~ 82 (366)
+++|+|.+.+|||||+..+....
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhhc
Confidence 59999999999999999887754
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=91.52 E-value=0.1 Score=44.54 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=29.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCCCCC
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 98 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e~~~ 98 (366)
..-+.|.|++|+|||++|..+-..........+.++.....
T Consensus 23 ~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~~ 63 (247)
T d1ny5a2 23 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIP 63 (247)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSC
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhhh
Confidence 44589999999999999998876554445555666654443
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=91.35 E-value=0.053 Score=41.41 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=26.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
.-+...|.+|.|||||+++..+ +...+.+++++-..
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~~---~~~~~~~vli~~P~ 42 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPAA---YAAQGYKVLVLNPS 42 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHHH---HHTTTCCEEEEESC
T ss_pred CCCEEEEEeCCCCCHHHHHHHH---HHHcCCcEEEEcCh
Confidence 3567889999999999876444 34456777777654
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.08 E-value=0.064 Score=43.26 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~ 81 (366)
++|+|..|+|||+|+.++...
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999998654
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.97 E-value=0.062 Score=43.15 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh
Q 017792 61 VEIYGPEASGKTTLALHVIAEAQR 84 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~~~ 84 (366)
++|+|..|+|||+|+.++...--+
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~ 28 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEA 28 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhhCCCC
Confidence 689999999999999998755433
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=90.90 E-value=0.049 Score=48.88 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEe
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 93 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id 93 (366)
.|.|-|+-|+||||++..+...+...+..++++.
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~ 40 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIG 40 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEe
Confidence 3789999999999999999888776666766664
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.97 E-value=0.085 Score=48.46 Aligned_cols=20 Identities=25% Similarity=0.399 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|.+|+|||||.+.+.+
T Consensus 59 Iai~G~~n~GKSSLiNaL~G 78 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRG 78 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 89999999999999999876
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.77 E-value=0.43 Score=42.58 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++|+|.-++|||||+-.++...
T Consensus 20 I~iiGhvd~GKTTL~d~Ll~~~ 41 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLVQRA 41 (341)
T ss_dssp EEEECCGGGTHHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHC
Confidence 8999999999999999887554
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=88.31 E-value=0.12 Score=45.60 Aligned_cols=20 Identities=45% Similarity=0.718 Sum_probs=18.0
Q ss_pred CCCCEEEEEcCCCCcHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLA 75 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~ 75 (366)
..|++.+++|-+|+|||||.
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 46899999999999999985
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=87.90 E-value=0.12 Score=45.67 Aligned_cols=20 Identities=40% Similarity=0.672 Sum_probs=17.8
Q ss_pred CCCEEEEEcCCCCcHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLAL 76 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~ 76 (366)
.|++.+++|.+|+|||||..
T Consensus 13 ~~~valffGLSGTGKTTLs~ 32 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLST 32 (318)
T ss_dssp TCCEEEEEECTTSCHHHHTC
T ss_pred CCCEEEEEccCCCCcccccc
Confidence 57899999999999999854
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=87.33 E-value=0.15 Score=45.05 Aligned_cols=21 Identities=38% Similarity=0.635 Sum_probs=18.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHH
Q 017792 56 PKGRVVEIYGPEASGKTTLAL 76 (366)
Q Consensus 56 ~~G~ii~I~G~~GsGKTTL~~ 76 (366)
..|.+.+++|-+|+|||||..
T Consensus 12 ~~gd~alfFGLSGTGKTTLs~ 32 (323)
T d1ii2a1 12 KQGDVTVFFGLSGTGKTTLSA 32 (323)
T ss_dssp TTCCEEEEECCTTSSHHHHHC
T ss_pred CCCCEEEEEccCCCCccccee
Confidence 357899999999999999963
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=86.99 E-value=0.2 Score=44.74 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=24.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 017792 60 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 92 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~i 92 (366)
.|.|-|+-|+||||++..++..+...+ .++++
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~-~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGS-PTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSS-CEEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCC-CeEEE
Confidence 467889999999999998887765443 45555
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.92 E-value=0.29 Score=36.78 Aligned_cols=39 Identities=13% Similarity=0.321 Sum_probs=29.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCC-eEEEEeCC
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQR-QGG-YCVFIDAE 95 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~~-~gg-~vl~id~e 95 (366)
.|=.+.+.|-+||||+|++..+...+.. .|+ ++-.+++.
T Consensus 5 qgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ 45 (122)
T d1g8fa3 5 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN 45 (122)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCT
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCC
Confidence 4667888899999999999999888766 454 44445443
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.64 E-value=0.13 Score=44.67 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017792 59 RVVEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 59 ~ii~I~G~~GsGKTTL~~~l~~ 80 (366)
.++.|+||.++|||||+.++++
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~ 54 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAG 54 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 4899999999999999998864
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=85.52 E-value=0.34 Score=39.56 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhc
Q 017792 61 VEIYGPEASGKTTLALHVIAEAQRQ 85 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~~~~ 85 (366)
++|+|...+|||||+.++...+...
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~~~~~ 30 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKILAEG 30 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCcHHHHHHHHHHHHHHc
Confidence 7899999999999999997765443
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=85.12 E-value=0.34 Score=42.18 Aligned_cols=25 Identities=20% Similarity=0.196 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
.+=-++|+|.|.+|||||...+...
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCC
Confidence 3345999999999999999888864
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=84.41 E-value=0.2 Score=44.00 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++|+|.|.+|||||...+.+.-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 7899999999999999887653
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=84.22 E-value=0.29 Score=42.22 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017792 60 VVEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 60 ii~I~G~~GsGKTTL~~~l~~~ 81 (366)
-++|+|-|.+|||||...+...
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999998877654
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=83.64 E-value=0.28 Score=39.71 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIA 80 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~ 80 (366)
++|+|...+|||||+.++.+
T Consensus 8 IaiiGhvd~GKSTL~~~L~g 27 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTG 27 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHT
T ss_pred EEEEeccCCcHHHHHHHHHh
Confidence 68999999999999999865
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=83.06 E-value=0.24 Score=44.11 Aligned_cols=33 Identities=33% Similarity=0.358 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 017792 58 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 92 (366)
Q Consensus 58 G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~i 92 (366)
.-.|.|-|+-|+||||++..++..+.. ..++++
T Consensus 4 ~lrI~IEG~iGsGKTTl~~~La~~l~~--~~v~~~ 36 (329)
T d1e2ka_ 4 LLRVYIDGPHGMGKTTTTQLLVALGSR--DDIVYV 36 (329)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC------CCEEEE
T ss_pred ceEEEEECCcCCCHHHHHHHHHHHhCC--CCeEEe
Confidence 334789999999999999988765532 345554
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.92 E-value=0.6 Score=38.07 Aligned_cols=43 Identities=28% Similarity=0.182 Sum_probs=29.6
Q ss_pred HHHHHhhCCCCcCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEeCC
Q 017792 44 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 95 (366)
Q Consensus 44 ~~LD~~L~~GGi~~G~ii~I~G~~GsGKTTL~~~l~~~~~~~gg~vl~id~e 95 (366)
..++.++. + + -..|..|+|+|||..+..++..+ +.+++++...
T Consensus 77 eav~~~~~-~----~-~~ll~~~tG~GKT~~a~~~~~~~---~~~~Liv~p~ 119 (206)
T d2fz4a1 77 KALERWLV-D----K-RGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPT 119 (206)
T ss_dssp HHHHHHTT-T----S-EEEEEESSSTTHHHHHHHHHHHS---CSCEEEEESS
T ss_pred HHHHHHHh-C----C-CcEEEeCCCCCceehHHhHHHHh---cCceeEEEcc
Confidence 56676665 2 2 34688999999998877665443 5677887643
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=80.40 E-value=0.38 Score=41.81 Aligned_cols=21 Identities=19% Similarity=0.542 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAE 81 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~ 81 (366)
++|+|.-++|||||+..+++.
T Consensus 27 ivVvG~~ssGKSSliNaLlG~ 47 (306)
T d1jwyb_ 27 IVVVGSQSSGKSSVLENIVGR 47 (306)
T ss_dssp EEEEECSSSSHHHHHHHHHTS
T ss_pred EEEEeCCCCCHHHHHHHHhCC
Confidence 689999999999999999874
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.17 E-value=0.39 Score=41.50 Aligned_cols=22 Identities=14% Similarity=0.450 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 017792 61 VEIYGPEASGKTTLALHVIAEA 82 (366)
Q Consensus 61 i~I~G~~GsGKTTL~~~l~~~~ 82 (366)
++|+|.-+||||||+..+++.-
T Consensus 29 ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 29 IAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEcCCCCCHHHHHHHHhCCC
Confidence 7799999999999999998643
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=80.10 E-value=0.59 Score=45.67 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 017792 57 KGRVVEIYGPEASGKTTLALHVIAEAQ 83 (366)
Q Consensus 57 ~G~ii~I~G~~GsGKTTL~~~l~~~~~ 83 (366)
+.+.+.|.|++|||||+-+++++.-+.
T Consensus 85 ~~QsIiisGeSGsGKTe~~k~il~yL~ 111 (684)
T d1lkxa_ 85 ENQCVIISGESGAGKTEASKKIMQFLT 111 (684)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999998877664
|