Citrus Sinensis ID: 018193

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MSSSSDAAARSDSHAPLLRPRDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRRNTRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccccEEHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEcccHHHHHHHHEEEEEEHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHccccccHHHHcccccccccccccccccccccccccccccccccccccEEEccccccccEEccccccccccccHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHEEEEEHHHHHHEEHHHEHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccEEEEccccccccccccccEEcccccccccccccEcccccccEEEEEcccccccEEEEccccccccHHHHHHHHHHHccccHHHHHHccccccc
Coil and Loop (DISEMBL)
mssssdaaarsdshapllrprdpsvspnaarPATLALLLGRatgrghgpsmLVRETAARELEERradwgyskpvvALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRrntrrvrddemggedfrdvnndsedeeedgivyrtstrtsFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVagqegaseadlsilpkyrfevqnndeklgvgagkmvpietnggyvanerillpedaecciclssyedgtelhalpcnhhfhSTCIVKWLkmnatcplckynilkgneqv
Flexible Loop (DISEMBL)
mssssdaaarsdshapllrprdpsvspnaARPATLALLLGRatgrghgpsmLVRETAARELEerradwgyskPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMeyrrrntrrvrddemggedfrdvnndsedeeedgivyrtstrtsftkrCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV
Low Complexity Region (SEG)
MssssdaaarsdshaPLLRPRDPSVSPNaarpatlalllgratgrgHGPSMLVretaareleerraDWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYrrrntrrvrDDEMGGEDFRdvnndsedeeedGIVYRTSTRTSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLavvflafdvffaifCVVlacligialccclpciiailYAVAGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV
Disordered region (IsUnstruct)
***********************************ALLLG***********************RRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRR******************************IVYRTSTRTSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK*****
Disordered Region (DISOPRED)
********************************************************************GYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYR***************************************TSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAG**************************************************PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL******
Disordered Region (DISEMBL)
***************PLLRPRDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRRNTRRVRDDEMGGEDFRDVN*********GIVYRTSTRTSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV
Disordered Region (DISPRO)
************************************************PSMLV*********ERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRRNT*********************************TRTSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFEVQ*************V****N*******RILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSSSDAAARSDSHAPLLRPRDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRRNTRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	359	2.2.26 [Sep-21-2011]
Q8GUU2	359	E3 ubiquitin protein liga	no	no	0.972	0.972	0.668	1e-135
Q93Z92	390	E3 ubiquitin-protein liga	no	no	0.835	0.769	0.560	9e-85
Q9LN71	408	E3 ubiquitin-protein liga	no	no	0.866	0.762	0.511	2e-81
Q8LDB8	381	E3 ubiquitin-protein liga	no	no	0.855	0.805	0.546	3e-76
Q08CG8	448	RING finger protein 44 OS	yes	no	0.200	0.160	0.333	7e-11
Q6Y290	419	E3 ubiquitin-protein liga	yes	no	0.250	0.214	0.333	2e-10
Q8VEM1	419	E3 ubiquitin-protein liga	yes	no	0.250	0.214	0.333	2e-10
Q86XS8	419	E3 ubiquitin-protein liga	yes	no	0.250	0.214	0.333	3e-10
Q9H0F5	515	RING finger protein 38 OS	no	no	0.200	0.139	0.323	1e-09
Q7L0R7	432	RING finger protein 44 OS	no	no	0.200	0.166	0.323	1e-09

>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1 PE=2 SV=1

 Score =  480 bits (1236), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/359 (66%), Positives = 273/359 (76%), Gaps = 10/359 (2%)

Query: 2   SSSSDAAARSDSHAPLLRPRDPSVSPNA---ARPATLALLLGRATGRGHGPSMLVRETAA 58
           S SSD+ A  D HAPLLRPR      ++   ARP  LA+LLGR TG    PSMLVRETAA
Sbjct: 3   SYSSDSTAARDQHAPLLRPRHDGSFSSSSSSARPTALAVLLGRITGH-RAPSMLVRETAA 61

Query: 59  RELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLV 118
           R LEERR DWGYSKPVVA DI+WN+A V+ SA ML+ T+ ERP+  IR+WIC Y LQCL 
Sbjct: 62  RALEERRIDWGYSKPVVAADILWNAALVLASAVMLVGTVEERPNEPIRVWICVYGLQCLF 121

Query: 119 HVVLVWMEYRRRN-TRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESI 177
           HVVLVW EY RRN TRR RD E    +  ++  D E + +D      ST  SF KRCESI
Sbjct: 122 HVVLVWSEYWRRNSTRRARDLESYDHEDYNIEYDYEQDSDDN-----STTYSFVKRCESI 176

Query: 178 NTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALC 237
           NT+ SF+WWI+GFYWVV GGD LL  AP LYWL+V+FLA DVFFA+FCVVLACL+GIALC
Sbjct: 177 NTVISFIWWIIGFYWVVEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVVLACLVGIALC 236

Query: 238 CCLPCIIAILYAVAGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVAN 297
           CCLPCIIA+LYAVAG EG SEA+L +LP Y+F+  +++EK   G GKMVPI  NG  +A 
Sbjct: 237 CCLPCIIALLYAVAGTEGVSEAELGVLPLYKFKAFHSNEKNITGPGKMVPIPINGLCLAT 296

Query: 298 ERILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 356
           ER LL EDA+CCICLSSYEDG ELHALPCNHHFHSTCIVKWLKM ATCPLCKYNILKG 
Sbjct: 297 ERTLLAEDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNILKGT 355

Probable E3 ubiquitin-protein ligase required for embryo development.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1

 Score =  313 bits (803), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 172/307 (56%), Positives = 216/307 (70%), Gaps = 7/307 (2%)

Query: 49  PSMLVRETAARELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLW 108
           PSMLVRETAA +LEER++DW YSKPVV LDI+WN AFV +  A+LI++ +E+P+  +R+W
Sbjct: 84  PSMLVRETAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVW 143

Query: 109 ICGYALQCLVHVVLVWMEYRRRNTRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRT 168
           + GY +QC +H+  V +EYRRR  RR  +D  GG      N+ S+       +      +
Sbjct: 144 VVGYGIQCWLHMACVCVEYRRRRRRRHPEDG-GGSGL--TNSSSQQYVSLAQLEDRGETS 200

Query: 169 SFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVL 228
           +  K  ES NTM SF+WWI+GFYWV +GG  L   +P+LYWL ++FL FDVFF +FCV L
Sbjct: 201 NPAKHLESANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVAL 260

Query: 229 ACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPI 288
           AC+IG+A+CCCLPCIIAILYAVA QEGAS+ D+  +PK+RF    N EKL   +GK   I
Sbjct: 261 ACVIGLAVCCCLPCIIAILYAVADQEGASKNDIDQMPKFRFTKTGNVEKL---SGKARGI 317

Query: 289 ETNGGYVAN-ERILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPL 347
            T  G  +  ER L PEDAECCICL  YEDG EL  LPCNHHFH TCI KWL +N+ CPL
Sbjct: 318 MTECGTDSPIERSLSPEDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPL 377

Query: 348 CKYNILK 354
           CK+NILK
Sbjct: 378 CKFNILK 384

Mediates E2-dependent protein ubiquitination in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1

 Score =  303 bits (775), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 180/352 (51%), Positives = 227/352 (64%), Gaps = 41/352 (11%)

Query: 36  ALLLGRAT-GR-GHGPSMLVRETAARELEERRADWGYSKPVVALDIMWNSAFVIVSAAML 93
           A  L RA+ GR    PSMLVRE AA +LEER++DW YSKPVV LDI+WN AFV V+ A+L
Sbjct: 60  ARFLSRASSGRVMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNLAFVSVATAIL 119

Query: 94  IITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRRNTRR------------------- 134
           +++  E P   +R+W+ GYALQC++H+V V +EYRRRN RR                   
Sbjct: 120 VMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEYRRRNRRRTNRTTTTTPPRSRSSSSSS 179

Query: 135 ----VRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWWIVGF 190
               + ++ +G      V + S       + +  +  +S  K  ES NTM SF+WWI+GF
Sbjct: 180 SSSSLEEEALGSRRNSGVQDLS-------LGHLDTESSSVAKHLESANTMFSFIWWIIGF 232

Query: 191 YWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAV 250
           YWV +GG  L Q +PR+YWL++VFL FDVFF +FCV LAC+IGIA+CCCLPCIIA+LYAV
Sbjct: 233 YWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAV 292

Query: 251 AGQEGASEADLSILPKYRF------EVQNNDEKLGVGAGKMVPIETNGGYVANERILLPE 304
           A QEGAS+ D+  L K++F          NDE  G   G M    T+      E  LL E
Sbjct: 293 ADQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPI---EHTLLQE 349

Query: 305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 356
           DAECCICLS+YEDGTEL  LPC HHFH +C+ KWL +NATCPLCKYNILK +
Sbjct: 350 DAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNILKSS 401

Mediates E2-dependent protein ubiquitination in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2

 Score =  285 bits (729), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 178/326 (54%), Positives = 220/326 (67%), Gaps = 19/326 (5%)

Query: 49  PSMLVRETAARELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLW 108
           PSMLVRE AA +LEER++DW YSKPVV LD +WN AFV+V+ A+L+++ +E P+  +R+W
Sbjct: 49  PSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVVATAVLVLSSDENPNMPLRVW 108

Query: 109 ICGYALQCLVHVVLVWMEYRRRNTRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTR- 167
           I GY LQC++H+V V +EYRRRN+RR RD           ++ S DEEE   + R S   
Sbjct: 109 IIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSSSMDEEEGLGLSRNSDER 168

Query: 168 -----------TSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLA 216
                       SF K  ES NTM SF+WW++GFYWV SGG  L Q +P+LYWL +VFL 
Sbjct: 169 YLELGQLENENNSFAKHLESANTMISFIWWVIGFYWVSSGGQELAQGSPQLYWLCIVFLG 228

Query: 217 FDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFEVQNN-- 274
           FDVFF +FCV LAC+IGIA+CCCLPCIIA+LYAVA QEGAS+ D+  L K++F    +  
Sbjct: 229 FDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVAEQEGASKEDIDQLTKFKFRKVGDTM 288

Query: 275 ----DEKLGVGAGKMVPIETNGGYVANERILLPEDAECCICLSSYEDGTELHALPCNHHF 330
               DE+ G G    V  E  G     E  L  EDAECCICLS+YED TEL  LPC HHF
Sbjct: 289 KHTVDEEQGQGDSGGVMTEC-GTDSPVEHALPHEDAECCICLSAYEDETELRELPCGHHF 347

Query: 331 HSTCIVKWLKMNATCPLCKYNILKGN 356
           H  C+ KWL +NATCPLCKYNILK +
Sbjct: 348 HCGCVDKWLYINATCPLCKYNILKSS 373

Mediates E2-dependent protein ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 27/99 (27%)

Query: 251 AGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDAECCI 310
           A   G ++AD+  LP YRF ++N+                             E   C +
Sbjct: 366 AKPRGLTKADIEQLPSYRFNLENHQS---------------------------EQTLCVV 398

Query: 311 CLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCK 349
           C S +E    L  LPCNH FH+ C+ KWLK N TCP+C+
Sbjct: 399 CFSDFESRQLLRVLPCNHEFHAKCVDKWLKTNRTCPICR 437

Danio rerio (taxid: 7955)

>sp|Q6Y290|GOLI_RAT E3 ubiquitin-protein ligase RNF130 OS=Rattus norvegicus GN=Rnf130 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 44/90 (48%)

Query: 266 KYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDAECCICLSSYEDGTELHALP 325
           +Y      N  +LG  A K +   T       ++   P+   C +C+ SY+    +  LP
Sbjct: 222 RYTNARDRNQRRLGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRVLP 281

Query: 326 CNHHFHSTCIVKWLKMNATCPLCKYNILKG 355
           C H FH +C+  WL  + TCP+CK NILK 
Sbjct: 282 CKHVFHKSCVDPWLSEHCTCPMCKLNILKA 311

Acts as an E3 ubiquitin-protein ligase (By similarity). May have a role during the programmed cell death of hematopoietic cells.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8VEM1|GOLI_MOUSE E3 ubiquitin-protein ligase RNF130 OS=Mus musculus GN=Rnf130 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 44/90 (48%)

Query: 266 KYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDAECCICLSSYEDGTELHALP 325
           +Y      N  +LG  A K +   T       ++   P+   C +C+ SY+    +  LP
Sbjct: 222 RYTNARDRNQRRLGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRVLP 281

Query: 326 CNHHFHSTCIVKWLKMNATCPLCKYNILKG 355
           C H FH +C+  WL  + TCP+CK NILK 
Sbjct: 282 CKHVFHKSCVDPWLSEHCTCPMCKLNILKA 311

Acts as an E3 ubiquitin-protein ligase (By similarity). May have a role during the programmed cell death of hematopoietic cells.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q86XS8|GOLI_HUMAN E3 ubiquitin-protein ligase RNF130 OS=Homo sapiens GN=RNF130 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 44/90 (48%)

Query: 266 KYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDAECCICLSSYEDGTELHALP 325
           +Y      N  +LG  A K +   T       ++   P+   C +C+ SY+    +  LP
Sbjct: 222 RYTNARDRNQRRLGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRILP 281

Query: 326 CNHHFHSTCIVKWLKMNATCPLCKYNILKG 355
           C H FH +C+  WL  + TCP+CK NILK 
Sbjct: 282 CKHVFHKSCVDPWLSEHCTCPMCKLNILKA 311

May have a role during the programmed cell death of hematopoietic cells (By similarity). Acts as an E3 ubiquitin-protein ligase.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 27/99 (27%)

Query: 251 AGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDAECCI 310
           A   G ++AD+  LP YRF   N+                             E   C +
Sbjct: 433 AKPRGLTKADIEQLPSYRFNPNNHQS---------------------------EQTLCVV 465

Query: 311 CLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCK 349
           C+  +E    L  LPCNH FH+ C+ KWLK N TCP+C+
Sbjct: 466 CMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 504

Homo sapiens (taxid: 9606)

>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 27/99 (27%)

Query: 251 AGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDAECCI 310
           A   G ++AD+  LP YRF   ++                             E   C +
Sbjct: 350 AKPRGLTKADIEQLPSYRFNPDSHQS---------------------------EQTLCVV 382

Query: 311 CLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCK 349
           C S +E    L  LPCNH FH+ C+ KWLK N TCP+C+
Sbjct: 383 CFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICR 421

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
359472593	2299	PREDICTED: uncharacterized protein LOC10	0.952	0.148	0.795	1e-152
255570075	963	cleavage and polyadenylation specificity	0.947	0.353	0.756	1e-150
224101895	351	predicted protein [Populus trichocarpa]	0.969	0.991	0.752	1e-149
147769549	361	hypothetical protein VITISV_014258 [Viti	0.922	0.916	0.791	1e-144
356521151	352	PREDICTED: E3 ubiquitin protein ligase R	0.972	0.991	0.734	1e-141
356513054	334	PREDICTED: E3 ubiquitin protein ligase R	0.908	0.976	0.721	1e-140
297838553	344	hypothetical protein ARALYDRAFT_475916 [	0.952	0.994	0.674	1e-137
15220639	343	C3HC4-type RING finger domain-containing	0.949	0.994	0.679	1e-137
21536719	343	putative RING zinc finger protein [Arabi	0.949	0.994	0.676	1e-136
356513052	344	PREDICTED: E3 ubiquitin protein ligase R	0.935	0.976	0.724	1e-136

>gi|359472593|ref|XP_002281277.2| PREDICTED: uncharacterized protein LOC100261060 [Vitis vinifera]

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 276/347 (79%), Positives = 300/347 (86%), Gaps = 5/347 (1%)

Query: 15   APLLRPRDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELEERRADWGYSKPV 74
            APLLRPR    +  +ARP TLALL+GRATGR  GPSMLVRETAARELEERRADWGYSKPV
Sbjct: 1956 APLLRPRQ-GTAEQSARPTTLALLMGRATGR-RGPSMLVRETAARELEERRADWGYSKPV 2013

Query: 75   VALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRRNTRR 134
            VALD+MWN +FVIVS  MLI T  ERP+T IRLWICGYALQC VHVVLVW+EYRRRN RR
Sbjct: 2014 VALDMMWNMSFVIVSIVMLICTARERPNTPIRLWICGYALQCGVHVVLVWLEYRRRNRRR 2073

Query: 135  VRDDEMGGE-DFRDVN-NDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWWIVGFYW 192
            VRD+E   +    D + NDSEDE+ +        ++S TKRCES+NTMASFLWWIVGFYW
Sbjct: 2074 VRDEEQQQQPQHSDSDVNDSEDEDGNSSASGGFNQSSVTKRCESVNTMASFLWWIVGFYW 2133

Query: 193  VVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAG 252
            VVSGG+ LLQ APRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAG
Sbjct: 2134 VVSGGEALLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAG 2193

Query: 253  QEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDAECCICL 312
            QEGASEADLS+LP+YRFE  NN+EK GVGAG M+P ET+ GY+ANERILLPEDAECCICL
Sbjct: 2194 QEGASEADLSMLPRYRFEA-NNEEKSGVGAGTMIPTETSSGYLANERILLPEDAECCICL 2252

Query: 313  SSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 359
            SSYEDG ELHALPCNHHFHSTCI KWLKMNATCPLCKYNILKG+EQ+
Sbjct: 2253 SSYEDGAELHALPCNHHFHSTCIAKWLKMNATCPLCKYNILKGSEQI 2299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570075|ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus communis] gi|223534732|gb|EEF36424.1| cleavage and polyadenylation specificity factor, putative [Ricinus communis]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 271/358 (75%), Positives = 300/358 (83%), Gaps = 18/358 (5%)

Query: 14  HAPLLRPRDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELEERRADWGYSKP 73
           HAPLL PR       A R A+LA+LLGR TGR  GPSMLVRETAA ELEERRADWGYSKP
Sbjct: 612 HAPLLHPRQ-----EAPRAASLAMLLGRVTGR-RGPSMLVRETAALELEERRADWGYSKP 665

Query: 74  VVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRRNTR 133
           VVALD++WN+AFV+VS  MLI+++ E+P+T IR+WICGYALQCLVHVVLVW+EYRRRN+R
Sbjct: 666 VVALDMVWNTAFVVVSITMLILSVKEKPNTPIRIWICGYALQCLVHVVLVWIEYRRRNSR 725

Query: 134 RVRDDE----------MGGEDFRDVNNDSEDEEEDGI--VYRTSTRTSFTKRCESINTMA 181
           RVRD+E          + G+   +   + + E+EDG+     TS R+S  KRCES+NTMA
Sbjct: 726 RVRDEERQQQQQQQAEVEGQHEENEGENVDSEDEDGVDRASVTSNRSSVIKRCESVNTMA 785

Query: 182 SFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLP 241
           SFLWWIVGFYWVVSGGD LLQ AP LYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLP
Sbjct: 786 SFLWWIVGFYWVVSGGDELLQNAPHLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLP 845

Query: 242 CIIAILYAVAGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERIL 301
           CIIAILYAVAGQEGASEADLSILPKYRF++   +EK  VGAGKMVPIET+ GY+ANERIL
Sbjct: 846 CIIAILYAVAGQEGASEADLSILPKYRFQLTVEEEKPSVGAGKMVPIETSSGYLANERIL 905

Query: 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 359
           LPEDAECCICL  YEDG ELH LPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV
Sbjct: 906 LPEDAECCICLCPYEDGAELHTLPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 963

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101895|ref|XP_002312464.1| predicted protein [Populus trichocarpa] gi|222852284|gb|EEE89831.1| predicted protein [Populus trichocarpa]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 265/352 (75%), Positives = 300/352 (85%), Gaps = 4/352 (1%)

Query: 8   AARSDSHAPLLRPR-DPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELEERRA 66
           +  ++ HAPLLRPR DP  SP + R  TL+ LLGRATGR  GPSMLVRETAAREL+ERRA
Sbjct: 2   STENEPHAPLLRPRQDPPTSPTS-RQTTLSALLGRATGR-RGPSMLVRETAARELDERRA 59

Query: 67  DWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWME 126
           DWGYSKPVV+LD+MWN+AFV+VS  ML++T+ ERP+T IR+WICGYALQCLVHVVLVW+E
Sbjct: 60  DWGYSKPVVSLDMMWNAAFVVVSVTMLLVTVKERPNTPIRIWICGYALQCLVHVVLVWLE 119

Query: 127 YRRRNTRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWW 186
           YRRRNTRR RD E   +   + N    DEE+D   +  S R+S TKRCES+NTM SFLWW
Sbjct: 120 YRRRNTRRERDIESQQQSTEEENVPESDEEDDRASF-ISPRSSVTKRCESVNTMVSFLWW 178

Query: 187 IVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAI 246
           +VGFYWVVSGGD+LLQ AP LYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAI
Sbjct: 179 MVGFYWVVSGGDVLLQNAPHLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAI 238

Query: 247 LYAVAGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDA 306
           LYAVAGQEGASEADL  LPKY+F++  N+EK G+ AGKMVP+ET+  ++  ERILLPEDA
Sbjct: 239 LYAVAGQEGASEADLIQLPKYKFQMIRNEEKPGIEAGKMVPVETSSRFLGTERILLPEDA 298

Query: 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQ 358
           ECCICLS YEDG ELHALPCNHHFH+TCIVKWLKMNATCPLCK+NILKGNEQ
Sbjct: 299 ECCICLSPYEDGAELHALPCNHHFHATCIVKWLKMNATCPLCKFNILKGNEQ 350

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147769549|emb|CAN61404.1| hypothetical protein VITISV_014258 [Vitis vinifera]

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 266/336 (79%), Positives = 288/336 (85%), Gaps = 5/336 (1%)

Query: 15  APLLRPRDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELEERRADWGYSKPV 74
           APLLRPR    +  +ARP TLALL+GRATGR  GPSMLVRETAARELEERRADWGYSKPV
Sbjct: 12  APLLRPRQ-GTAEQSARPTTLALLMGRATGR-RGPSMLVRETAARELEERRADWGYSKPV 69

Query: 75  VALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRRNTRR 134
           VALD+MWN +FVIVS  MLI T  ERP+T IRLWICGYALQC VHVVLVW+EYRRR+ RR
Sbjct: 70  VALDMMWNMSFVIVSIVMLICTARERPNTPIRLWICGYALQCGVHVVLVWLEYRRRSRRR 129

Query: 135 VRDDEMGGE-DFRDVN-NDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWWIVGFYW 192
           VRD+E   +    D + NDSEDE+ +        ++S TKRCES+NTMASFLWWIVGFYW
Sbjct: 130 VRDEEQQQQPQHSDSDVNDSEDEDGNSSASGGFNQSSVTKRCESVNTMASFLWWIVGFYW 189

Query: 193 VVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAG 252
           VVSGG+ LLQ APRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAG
Sbjct: 190 VVSGGEALLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAG 249

Query: 253 QEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDAECCICL 312
           QEGASEADLS+LP+YRFE  NN+EK GVGAG M P ET+ GY+ANERILLPEDAECCICL
Sbjct: 250 QEGASEADLSMLPRYRFEA-NNEEKSGVGAGTMFPTETSSGYLANERILLPEDAECCICL 308

Query: 313 SSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLC 348
           SSYEDG ELHALPCNHHFHSTCI KWLKMNATCPLC
Sbjct: 309 SSYEDGAELHALPCNHHFHSTCIAKWLKMNATCPLC 344

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521151|ref|XP_003529221.1| PREDICTED: E3 ubiquitin protein ligase RIE1-like [Glycine max]

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 266/362 (73%), Positives = 296/362 (81%), Gaps = 13/362 (3%)

Query: 1   MSSSSDAAARS-DSHAPLLRP-RDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAA 58
           MSS + A+  + +SHAPLLRP  D S +P      TLALLLGRA  RG  PSMLVRETAA
Sbjct: 1   MSSQTAASMEAPESHAPLLRPLTDASRAPVP----TLALLLGRAGRRG--PSMLVRETAA 54

Query: 59  RELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLV 118
           RELEERRADWGYSKPVVALD+ WN AFV+V+A ML  T  ERP+T IR+WI GYALQCLV
Sbjct: 55  RELEERRADWGYSKPVVALDMSWNMAFVVVTAVMLACTTAERPNTPIRVWIVGYALQCLV 114

Query: 119 HVVLVWMEYRRRNTRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRT-STRTSFTKRCESI 177
           HV+LVW+EYRRR+ R    D   G+  RDV +D+   +ED    R  S+  SFTKRCE +
Sbjct: 115 HVLLVWLEYRRRSRR----DSHHGQRARDVESDAGSGDEDYSDDRDWSSGYSFTKRCELL 170

Query: 178 NTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALC 237
           NT  SFLWWIVGFYWVVSGG++LLQ APRLYWL VVFLAFDVFFAIFCVVLACLIGIALC
Sbjct: 171 NTGVSFLWWIVGFYWVVSGGNILLQDAPRLYWLVVVFLAFDVFFAIFCVVLACLIGIALC 230

Query: 238 CCLPCIIAILYAVAGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVAN 297
           CCLPCIIAILYAVAGQEGASEADLS+LPKYRF + ++++K   GAG MVPIET+  Y+AN
Sbjct: 231 CCLPCIIAILYAVAGQEGASEADLSMLPKYRFRILSDEDKPSGGAGSMVPIETSSAYLAN 290

Query: 298 ERILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNE 357
           ER LLPEDAECCICL SYEDG ELHALPCNHHFHS+CIVKWLKMNATCPLCKYNILKGNE
Sbjct: 291 ERTLLPEDAECCICLCSYEDGAELHALPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNE 350

Query: 358 QV 359
           QV
Sbjct: 351 QV 352

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513054|ref|XP_003525229.1| PREDICTED: E3 ubiquitin protein ligase RIE1-like isoform 2 [Glycine max]

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 251/348 (72%), Positives = 274/348 (78%), Gaps = 22/348 (6%)

Query: 12  DSHAPLLRPRDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELEERRADWGYS 71
            SHAPLL PR  +    AAR   LALLLGR   RGH  S +VRETAARELEERRADW YS
Sbjct: 9   QSHAPLLLPRPDA----AARLPILALLLGR---RGH--SAVVRETAARELEERRADWTYS 59

Query: 72  KPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRRN 131
           KPVVALDI WN AFV+VSA ML  T+ E P+T IR WICGYALQCLVHV LVW+EYRRRN
Sbjct: 60  KPVVALDITWNMAFVLVSAVMLACTVKENPNTPIRWWICGYALQCLVHVALVWLEYRRRN 119

Query: 132 TRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWWIVGFY 191
                ++      + DVN+  ED               FTKRC S+NTM S LWW+VGFY
Sbjct: 120 DAPRDEESAASLQYDDVNDSDED-------------ARFTKRCASLNTMISLLWWMVGFY 166

Query: 192 WVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVA 251
           WVVSGGD+LLQ APRLYWL+VVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVA
Sbjct: 167 WVVSGGDILLQDAPRLYWLSVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVA 226

Query: 252 GQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDAECCIC 311
           GQEGASE+DLSILPKYRF++ +N+E  G G G M+P+ET+ GY  NER L PEDAECCIC
Sbjct: 227 GQEGASESDLSILPKYRFQLLSNEETPGEGGGSMIPMETSNGYSVNERTLSPEDAECCIC 286

Query: 312 LSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 359
           +SSYEDG ELH LPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV
Sbjct: 287 ISSYEDGAELHVLPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 334

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838553|ref|XP_002887158.1| hypothetical protein ARALYDRAFT_475916 [Arabidopsis lyrata subsp. lyrata] gi|297332999|gb|EFH63417.1| hypothetical protein ARALYDRAFT_475916 [Arabidopsis lyrata subsp. lyrata]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 240/356 (67%), Positives = 280/356 (78%), Gaps = 14/356 (3%)

Query: 3   SSSDAAARSDSHAPLLRPRDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELE 62
           SS ++ + SDS  PLLR R  S      RP  +A+LLGRA+GR  G SM+VRETAA+ELE
Sbjct: 2   SSPESPSGSDSSTPLLRSRQSS----PRRPPVIAVLLGRASGR-RGASMVVRETAAQELE 56

Query: 63  ERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVL 122
           ERRADWGYSKPVVALD++WN+AFV+V+  ML++   E+P+  IR+WICGYA+QCLVHVVL
Sbjct: 57  ERRADWGYSKPVVALDMLWNTAFVVVAIVMLLVFKEEKPNVPIRVWICGYAIQCLVHVVL 116

Query: 123 VWMEYRRRNTRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMAS 182
           VW+E+R+RN R    D    +     N+DSEDE+ D        R   TK CES+NT+ S
Sbjct: 117 VWLEFRKRNARTRTGDLEAAQG--SGNHDSEDEDND-------ERILSTKTCESMNTIIS 167

Query: 183 FLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPC 242
           F+WWI GFYW+VSGGD+LLQ A  LYWL  +FLAFDVFFAIFCVVLACLIGIALCCCLPC
Sbjct: 168 FIWWIAGFYWLVSGGDILLQNATHLYWLTFIFLAFDVFFAIFCVVLACLIGIALCCCLPC 227

Query: 243 IIAILYAVAGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILL 302
           IIA+LYAVAGQEGASEADLSILPKYRF+  NNDEK   G GKM+P+E     +  ER+LL
Sbjct: 228 IIALLYAVAGQEGASEADLSILPKYRFQALNNDEKQSDGGGKMIPVEAGSENMGKERVLL 287

Query: 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQ 358
           PEDA+CCICLSSYEDG EL +L CNHHFHSTCIVKWLKMNATCPLCK+NILKGNEQ
Sbjct: 288 PEDADCCICLSSYEDGAELVSLSCNHHFHSTCIVKWLKMNATCPLCKFNILKGNEQ 343

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220639|ref|NP_176974.1| C3HC4-type RING finger domain-containing protein [Arabidopsis thaliana] gi|12324089|gb|AAG52017.1|AC012563_27 putative RING zinc finger protein; 27623-28978 [Arabidopsis thaliana] gi|90093276|gb|ABD85151.1| At1g68070 [Arabidopsis thaliana] gi|332196622|gb|AEE34743.1| C3HC4-type RING finger domain-containing protein [Arabidopsis thaliana]

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 242/356 (67%), Positives = 280/356 (78%), Gaps = 15/356 (4%)

Query: 3   SSSDAAARSDSHAPLLRPRDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELE 62
           SS ++ + SDS  PLLR R  S      R   +A+LL RA+GR  G SM+VRETAA+ELE
Sbjct: 2   SSPESPSGSDSSTPLLRSRQSS----PRRQPVIAVLLNRASGR-RGASMVVRETAAQELE 56

Query: 63  ERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVL 122
           ERRADWGYSKPVVALD++WN+AFV+V+  ML++   E+P+  IR+WICGYA+QCLVHVVL
Sbjct: 57  ERRADWGYSKPVVALDMLWNTAFVLVAIVMLLVFKEEKPNVPIRIWICGYAIQCLVHVVL 116

Query: 123 VWMEYRRRNTRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMAS 182
           VW+E+R+RN R    D    E  +  N DSEDE+ D        R   TK CES+NT+ S
Sbjct: 117 VWLEFRKRNARSRPGDL---EAAQATNQDSEDEDND-------ERFLSTKTCESMNTIIS 166

Query: 183 FLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPC 242
           F+WWIVGFYW+VSGGD+LLQ A  LYWL  VFLAFDVFFAIFCVVLACLIGIALCCCLPC
Sbjct: 167 FVWWIVGFYWLVSGGDILLQNATHLYWLTFVFLAFDVFFAIFCVVLACLIGIALCCCLPC 226

Query: 243 IIAILYAVAGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILL 302
           IIA+LYAVAGQEGASEADLSILPKYRF   NNDEK   G GKM+P++     + NER+LL
Sbjct: 227 IIALLYAVAGQEGASEADLSILPKYRFHTMNNDEKQSDGGGKMIPVDAASENLGNERVLL 286

Query: 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQ 358
           PEDA+CCICLSSYEDG EL +LPCNHHFHSTCIVKWLKMNATCPLCK+NILKGNEQ
Sbjct: 287 PEDADCCICLSSYEDGAELVSLPCNHHFHSTCIVKWLKMNATCPLCKFNILKGNEQ 342

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536719|gb|AAM61051.1| putative RING zinc finger protein [Arabidopsis thaliana]

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 241/356 (67%), Positives = 280/356 (78%), Gaps = 15/356 (4%)

Query: 3   SSSDAAARSDSHAPLLRPRDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELE 62
           SS ++ + SDS  PL+R R  S      R   +A+LL RA+GR  G SM+VRETAA+ELE
Sbjct: 2   SSPESPSGSDSSTPLIRSRQSS----PRRQPVIAVLLNRASGR-RGASMVVRETAAQELE 56

Query: 63  ERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVL 122
           ERRADWGYSKPVVALD++WN+AFV+V+  ML++   E+P+  IR+WICGYA+QCLVHVVL
Sbjct: 57  ERRADWGYSKPVVALDMLWNTAFVLVAIVMLLVFKEEKPNVPIRIWICGYAIQCLVHVVL 116

Query: 123 VWMEYRRRNTRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMAS 182
           VW+E+R+RN R    D    E  +  N DSEDE+ D        R   TK CES+NT+ S
Sbjct: 117 VWLEFRKRNARSRPGDL---EAAQATNQDSEDEDND-------ERFLSTKTCESMNTIIS 166

Query: 183 FLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPC 242
           F+WWIVGFYW+VSGGD+LLQ A  LYWL  VFLAFDVFFAIFCVVLACLIGIALCCCLPC
Sbjct: 167 FVWWIVGFYWLVSGGDILLQNATHLYWLTFVFLAFDVFFAIFCVVLACLIGIALCCCLPC 226

Query: 243 IIAILYAVAGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILL 302
           IIA+LYAVAGQEGASEADLSILPKYRF   NNDEK   G GKM+P++     + NER+LL
Sbjct: 227 IIALLYAVAGQEGASEADLSILPKYRFHTMNNDEKQSDGGGKMIPVDAASENLGNERVLL 286

Query: 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQ 358
           PEDA+CCICLSSYEDG EL +LPCNHHFHSTCIVKWLKMNATCPLCK+NILKGNEQ
Sbjct: 287 PEDADCCICLSSYEDGAELVSLPCNHHFHSTCIVKWLKMNATCPLCKFNILKGNEQ 342

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513052|ref|XP_003525228.1| PREDICTED: E3 ubiquitin protein ligase RIE1-like isoform 1 [Glycine max]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 252/348 (72%), Positives = 279/348 (80%), Gaps = 12/348 (3%)

Query: 12  DSHAPLLRPRDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELEERRADWGYS 71
            SHAPLL PR  +    AAR   LALLLGR   RGH  S +VRETAARELEERRADW YS
Sbjct: 9   QSHAPLLLPRPDA----AARLPILALLLGR---RGH--SAVVRETAARELEERRADWTYS 59

Query: 72  KPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRRN 131
           KPVVALDI WN AFV+VSA ML  T+ E P+T IR WICGYALQCLVHV LVW+EYRRRN
Sbjct: 60  KPVVALDITWNMAFVLVSAVMLACTVKENPNTPIRWWICGYALQCLVHVALVWLEYRRRN 119

Query: 132 TRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWWIVGFY 191
                 DE      +  + +  DE++ G    +S+ + FTKRC S+NTM S LWW+VGFY
Sbjct: 120 D--APRDEESAASLQYDDVNDSDEDDVG-TSGSSSSSGFTKRCASLNTMISLLWWMVGFY 176

Query: 192 WVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVA 251
           WVVSGGD+LLQ APRLYWL+VVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVA
Sbjct: 177 WVVSGGDILLQDAPRLYWLSVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVA 236

Query: 252 GQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDAECCIC 311
           GQEGASE+DLSILPKYRF++ +N+E  G G G M+P+ET+ GY  NER L PEDAECCIC
Sbjct: 237 GQEGASESDLSILPKYRFQLLSNEETPGEGGGSMIPMETSNGYSVNERTLSPEDAECCIC 296

Query: 312 LSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 359
           +SSYEDG ELH LPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV
Sbjct: 297 ISSYEDGAELHVLPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
TAIR|locus:2200301	343	AT1G68070 [Arabidopsis thalian	0.838	0.877	0.540	1.8e-87
TAIR|locus:1005452975	359	RIE1 "RING-finger protein for	0.930	0.930	0.514	3.3e-86
TAIR|locus:2195077	408	AT1G12760 [Arabidopsis thalian	0.518	0.455	0.471	2.6e-63
TAIR|locus:2139717	390	AT4G11680 [Arabidopsis thalian	0.849	0.782	0.431	1.8e-62
TAIR|locus:2098916	379	AT3G61180 [Arabidopsis thalian	0.844	0.799	0.403	2.2e-57
TAIR|locus:2015248	381	AT1G63170 [Arabidopsis thalian	0.523	0.493	0.466	1.6e-40
TAIR|locus:2125652	453	AT4G32600 [Arabidopsis thalian	0.281	0.222	0.403	1.2e-26
TAIR|locus:2034210	407	AT1G80400 [Arabidopsis thalian	0.259	0.228	0.41	3.8e-25
TAIR|locus:2133877	335	AT4G26580 [Arabidopsis thalian	0.133	0.143	0.479	2.1e-18
TAIR|locus:2161740	343	AT5G55970 [Arabidopsis thalian	0.222	0.233	0.35	1.7e-17

TAIR|locus:2200301 AT1G68070 [Arabidopsis thaliana (taxid:3702)]

 Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
 Identities = 168/311 (54%), Positives = 196/311 (63%)

Query:    48 GPSMLVXXXXXXXXXXXXXDWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRL 107
             G SM+V             DWGYSKPVVALD++WN+AFV+V+  ML++   E+P+  IR+
Sbjct:    42 GASMVVRETAAQELEERRADWGYSKPVVALDMLWNTAFVLVAIVMLLVFKEEKPNVPIRI 101

Query:   108 WICGYALQCLVHVVLVWMEYXXXXXXXXXDDEMGGEDFRXXXXXXXXXXXXGIVYRTSTR 167
             WICGYA+QCLVHVVLVW+E+          D    +                       R
Sbjct:   102 WICGYAIQCLVHVVLVWLEFRKRNARSRPGDLEAAQATNQDSEDED----------NDER 151

Query:   168 TSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLXXXXXXXXXXXXXXCVV 227
                TK CES+NT+ SF+WWIVGFYW+VSGGD+LLQ A  LYWL              CVV
Sbjct:   152 FLSTKTCESMNTIISFVWWIVGFYWLVSGGDILLQNATHLYWLTFVFLAFDVFFAIFCVV 211

Query:   228 XXXXXXXXXXXXXXXXXXXXYAVAGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVP 287
                                 YAVAGQEGASEADLSILPKYRF   NNDEK   G GKM+P
Sbjct:   212 LACLIGIALCCCLPCIIALLYAVAGQEGASEADLSILPKYRFHTMNNDEKQSDGGGKMIP 271

Query:   288 IETNGGYVANERILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPL 347
             ++     + NER+LLPEDA+CCICLSSYEDG EL +LPCNHHFHSTCIVKWLKMNATCPL
Sbjct:   272 VDAASENLGNERVLLPEDADCCICLSSYEDGAELVSLPCNHHFHSTCIVKWLKMNATCPL 331

Query:   348 CKYNILKGNEQ 358
             CK+NILKGNEQ
Sbjct:   332 CKFNILKGNEQ 342

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:1005452975 RIE1 "RING-finger protein for embryogenesis" [Arabidopsis thaliana (taxid:3702)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 177/344 (51%), Positives = 198/344 (57%)

Query:    16 PLLRPR-DPSVSPNXXXXXXXXXXXXXXXXXXH-GPSMLVXXXXXXXXXXXXXDWGYSKP 73
             PLLRPR D S S +                  H  PSMLV             DWGYSKP
Sbjct:    17 PLLRPRHDGSFSSSSSSARPTALAVLLGRITGHRAPSMLVRETAARALEERRIDWGYSKP 76

Query:    74 VVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYXXXXXX 133
             VVA DI+WN+A V+ SA ML+ T+ ERP+  IR+WIC Y LQCL HVVLVW EY      
Sbjct:    77 VVAADILWNAALVLASAVMLVGTVEERPNEPIRVWICVYGLQCLFHVVLVWSEYWRRNST 136

Query:   134 XXXDD--EMGGEDFRXXXXXXXXXXXXGIVYRTSTRTSFTKRCESINTMASFLWWIVGFY 191
                 D      ED+                   ST  SF KRCESINT+ SF+WWI+GFY
Sbjct:   137 RRARDLESYDHEDYNIEYDYEQDSDD------NSTTYSFVKRCESINTVISFIWWIIGFY 190

Query:   192 WVVSGGDLLLQAAPRLYWLXXXXXXXXXXXXXXCVVXXXXXXXXXXXXXXXXXXXXYAVA 251
             WVV GGD LL  AP LYWL              CVV                    YAVA
Sbjct:   191 WVVEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVVLACLVGIALCCCLPCIIALLYAVA 250

Query:   252 GQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDAECCIC 311
             G EG SEA+L +LP Y+F+  +++EK   G GKMVPI  NG  +A ER LL EDA+CCIC
Sbjct:   251 GTEGVSEAELGVLPLYKFKAFHSNEKNITGPGKMVPIPINGLCLATERTLLAEDADCCIC 310

Query:   312 LSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG 355
             LSSYEDG ELHALPCNHHFHSTCIVKWLKM ATCPLCKYNILKG
Sbjct:   311 LSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNILKG 354

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009790 "embryo development" evidence=IMP

TAIR|locus:2195077 AT1G12760 [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 2.6e-63, Sum P(2) = 2.6e-63
 Identities = 92/195 (47%), Positives = 108/195 (55%)

Query:   168 TSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLXXXXXXXXXXXXXXCVV 227
             +S  K  ES NTM SF+WWI+GFYWV +GG  L Q +PR+YWL              CV 
Sbjct:   210 SSVAKHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVA 269

Query:   228 XXXXXXXXXXXXXXXXXXXXYAVAGQEGASEADLSILPKYRFEV------QNNDEKLGVG 281
                                 YAVA QEGAS+ D+  L K++F          NDE  G  
Sbjct:   270 LACVIGIAVCCCLPCIIAVLYAVADQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTT 329

Query:   282 AGKMVPIETNGGYVANERILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM 341
              G M    T+      E  LL EDAECCICLS+YEDGTEL  LPC HHFH +C+ KWL +
Sbjct:   330 EGIMTECGTDSPI---EHTLLQEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYI 386

Query:   342 NATCPLCKYNILKGN 356
             NATCPLCKYNILK +
Sbjct:   387 NATCPLCKYNILKSS 401

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

TAIR|locus:2139717 AT4G11680 [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 135/313 (43%), Positives = 167/313 (53%)

Query:    49 PSMLVXXXXXXXXXXXXXDWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLW 108
             PSMLV             DW YSKPVV LDI+WN AFV +  A+LI++ +E+P+  +R+W
Sbjct:    84 PSMLVRETAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVW 143

Query:   109 ICGYALQCLVHVVLVWMEYXXXXXXXXXDDEMGGEDFRXXXXXXXXXXXXGIVYRTSTRT 168
             + GY +QC +H+  V +EY         +D  GG                 +  R  T  
Sbjct:   144 VVGYGIQCWLHMACVCVEYRRRRRRRHPED--GGGSGLTNSSSQQYVSLAQLEDRGETSN 201

Query:   169 SFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLXXXXXXXXXXXXXXCVVX 228
                K  ES NTM SF+WWI+GFYWV +GG  L   +P+LYWL              CV  
Sbjct:   202 P-AKHLESANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVAL 260

Query:   229 XXXXXXXXXXXXXXXXXXXYAVAGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPI 288
                                YAVA QEGAS+ D+  +PK+RF    N EKL   +GK   I
Sbjct:   261 ACVIGLAVCCCLPCIIAILYAVADQEGASKNDIDQMPKFRFTKTGNVEKL---SGKARGI 317

Query:   289 ETNGGYVAN-ERILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPL 347
              T  G  +  ER L PEDAECCICL  YEDG EL  LPCNHHFH TCI KWL +N+ CPL
Sbjct:   318 MTECGTDSPIERSLSPEDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPL 377

Query:   348 CKYNILKG-NEQV 359
             CK+NILK  N +V
Sbjct:   378 CKFNILKNANNEV 390

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2098916 AT3G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 129/320 (40%), Positives = 163/320 (50%)

Query:    49 PSMLVXXXXXXXXXXXXXDWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLW 108
             PS+ V              W YSKP++ LDI+WN  FVIVS A+L  + +E P   +RLW
Sbjct:    59 PSVRVREVAAEQLEERQSQWAYSKPIIVLDILWNFLFVIVSIAILGFSSDEDPDVPLRLW 118

Query:   109 ICGYALQCLVHVVLVWMEYXXXXXXXXXDDEMGGEDFRXXXXXXXXXXXXGI-VYRTSTR 167
             I GY +QCL HV  V  EY             G +               G  +  T   
Sbjct:   119 IIGYNVQCLFHVGCVIAEYKRRRVANSPPPS-GEDSSNHESLSGSEDESDGYSINNTDDD 177

Query:   168 ---TSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLXXXXXXXXXXXXXX 224
                TSFTK  ES NTM SF+WWI+GFYWV +  + L Q++P+LYWL              
Sbjct:   178 DHGTSFTKHLESANTMFSFVWWIIGFYWVTADTEALAQSSPQLYWLCVAFLAFDVMFVVI 237

Query:   225 CVVXXXXXXXXXXXXXXXXXXXXYAVAGQEGASEADLSILPKYRFEVQNNDEKLGVGAGK 284
             CV                     YA+A QEGA + ++  L K++F    N EK+    G+
Sbjct:   238 CVAVASLIGIAVCCCLPCIIAILYALADQEGAPDEEIERLLKFKFLTVKNSEKVN---GE 294

Query:   285 MVPIETNGGYVAN-------ERILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVK 337
             +   ET GG +         ER+LL EDAEC ICL +YEDG EL  LPC HHFHS C+ K
Sbjct:   295 IR--ETQGGIMTGLDTESQTERMLLSEDAECSICLCAYEDGVELRELPCRHHFHSLCVDK 352

Query:   338 WLKMNATCPLCKYNILKGNE 357
             WL++NATCPLCK+NILK  E
Sbjct:   353 WLRINATCPLCKFNILKNGE 372

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2015248 AT1G63170 [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 90/193 (46%), Positives = 106/193 (54%)

Query:   169 SFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLXXXXXXXXXXXXXXCVVX 228
             SF K  ES NTM SF+WW++GFYWV SGG  L Q +P+LYWL              CV  
Sbjct:   181 SFAKHLESANTMISFIWWVIGFYWVSSGGQELAQGSPQLYWLCIVFLGFDVFFVVFCVAL 240

Query:   229 XXXXXXXXXXXXXXXXXXXYAVAGQEGASEADLSILPKYRFEVQNNDEKLGV----GAGK 284
                                YAVA QEGAS+ D+  L K++F    +  K  V    G G 
Sbjct:   241 ACVIGIAVCCCLPCIIAVLYAVAEQEGASKEDIDQLTKFKFRKVGDTMKHTVDEEQGQGD 300

Query:   285 MVPIETNGGYVANERILLP-EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA 343
                + T  G  +     LP EDAECCICLS+YED TEL  LPC HHFH  C+ KWL +NA
Sbjct:   301 SGGVMTECGTDSPVEHALPHEDAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINA 360

Query:   344 TCPLCKYNILKGN 356
             TCPLCKYNILK +
Sbjct:   361 TCPLCKYNILKSS 373

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2125652 AT4G32600 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
 Identities = 44/109 (40%), Positives = 64/109 (58%)

Query:   255 GASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVA----NERILLPEDAECCI 310
             GA+   ++ LP ++F+++ +    G   G      + GG VA    NER +  EDA CCI
Sbjct:   310 GATPESINALPTHKFKLKKSRSN-GDDNGSST---SEGGVVAAGTDNERAISGEDAVCCI 365

Query:   311 CLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 359
             CL+ Y +  EL  LPC+H FH  C+ KWLK+NA+CPLCK  + + N  +
Sbjct:   366 CLAKYANNEELRELPCSHFFHKECVDKWLKINASCPLCKSEVGEKNSDL 414

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2034210 AT1G80400 [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 3.8e-25, Sum P(3) = 3.8e-25
 Identities = 41/100 (41%), Positives = 61/100 (61%)

Query:   255 GASEADLSILPKYRFEVQN-NDEKLGV-GAGKMVPIETNGGYVANERILLPEDAECCICL 312
             GA+   ++ LP YRF+ ++ ND +    G G  + + +       +R++  EDA CCICL
Sbjct:   305 GATAEAINALPVYRFKSKSRNDLEFSEEGEGGFLLLGSQ-----KKRLISGEDASCCICL 359

Query:   313 SSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352
             + Y D  ++  LPC+H FH  C+ KWLK+NATCPLCK  +
Sbjct:   360 TRYGDDEQVRELPCSHVFHVDCVDKWLKINATCPLCKNEV 399

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2133877 AT4G26580 [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 2.1e-18, Sum P(4) = 2.1e-18
 Identities = 23/48 (47%), Positives = 35/48 (72%)

Query:   305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352
             D ECCICL+ Y++  E+  LPC+H FH  C+ +WL++ + CPLCK ++
Sbjct:   286 DPECCICLAKYKEKEEVRKLPCSHRFHLKCVDQWLRIISCCPLCKQDL 333

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2161740 AT5G55970 [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
 Identities = 28/80 (35%), Positives = 50/80 (62%)

Query:   273 NNDEKLGVGAGKMVPIETNGGYVANERILLPEDAECCICLSSYEDGTELHALPCNHHFHS 332
             ++D+   + + K   I+ +     ++   + +D ECCICL+ Y+D  E+  LPC+H FHS
Sbjct:   262 SDDQISSLPSWKFKRIDDSASDSDSDSATVTDDPECCICLAKYKDKEEVRKLPCSHKFHS 321

Query:   333 TCIVKWLKMNATCPLCKYNI 352
              C+ +WL++ + CPLCK ++
Sbjct:   322 KCVDQWLRIISCCPLCKQDL 341

GO:0008270 "zinc ion binding" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030590001 SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (355 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	359
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	3e-15
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	1e-10
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	6e-09
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	1e-08
smart00184	40	smart00184, RING, Ring finger	2e-08
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	2e-08
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	4e-07
COG5219	1525	COG5219, COG5219, Uncharacterized conserved protei	7e-05
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	1e-04
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	3e-04
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	7e-04
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	0.001

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 68.6 bits (168), Expect = 3e-15
 Identities = 23/43 (53%), Positives = 29/43 (67%)

Query: 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCK 349
           EC ICL  +E G E+  LPC H FH  C+ KWL+ + TCPLC+
Sbjct: 2   ECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLCR 44

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 55.9 bits (135), Expect = 1e-10
 Identities = 23/47 (48%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK-MNATCPLCKYNI 352
           EC ICL  + +   L  LPC H F  +CI KWLK    TCPLC+  I
Sbjct: 1   ECPICLEEFREPVVL--LPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 51.0 bits (122), Expect = 6e-09
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKY 350
           E+ EC ICL    D   +   PC H F   CI+++LK  + CP+C+ 
Sbjct: 1   EELECPICLDLLRD--PVVLTPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 10/56 (17%)

Query: 304 EDAECCICLSSYEDGTELHALP----------CNHHFHSTCIVKWLKMNATCPLCK 349
           ED  C IC + ++        P          C H FH  CI +WLK   TCPLC+
Sbjct: 18  EDDVCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM-NATCPLC 348
           C ICL  Y    +   LPC H F  +CI KWL+  N TCP+C
Sbjct: 1   CPICLEEYL--KDPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWL-KMNATCPLCK 349
           EC IC+S++     L  LPC+H FH  C+ KWL   +  CP+C+
Sbjct: 325 ECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCR 368

Length = 374

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 45.9 bits (109), Expect = 4e-07
 Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLK-MNATCPLC 348
           C ICL   +D   +  LPC H F S CI+ WL+  N TCPLC
Sbjct: 1   CPICLEEPKDPVTI--LPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 44.7 bits (105), Expect = 7e-05
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 14/56 (25%)

Query: 307  ECCICLS--SYEDGTELHALP------CNHHFHSTCIVKWLKM--NATCPLCKYNI 352
            EC IC S     D +    LP      C + FH+ C+ KW      + CPLC+  I
Sbjct: 1471 ECAICYSVLDMVDRS----LPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522

Length = 1525

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 304 EDAECCICLSS-YE---DGTELHALP-CNHHFHSTCIVKWLKMNATCPLCK 349
           +D EC IC+   Y+          L  CNH F   CI  W K   TCP+C+
Sbjct: 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCR 223

Length = 238

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 307 ECCI-CLSSYEDGTELHAL--PCNHHFHSTCIVKWLKMNATCPLCK 349
             C  C      G E   +   CNH FH  CI +WL     CPL +
Sbjct: 32  GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDR 77

Length = 88

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 37.8 bits (88), Expect = 7e-04
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 13/68 (19%)

Query: 295 VANERILLPEDAECCICLSSYE----------DGTELHALPCNHHFHSTCIVKWLKMNAT 344
           VA      P D  C IC  S++          D   L    C H+FH  CI+KWL    +
Sbjct: 11  VATWTWDTPSDDVCGICRVSFDGTCPQCKFPGDDCPLVWGKCKHNFHMHCILKWLATETS 70

Query: 345 ---CPLCK 349
              CP+C+
Sbjct: 71  KGLCPMCR 78

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 324 LPCNHHFHSTCIVKWLKMNATCPLCK 349
           LPC H  H  C+  WL+   TCP+C+
Sbjct: 316 LPCGHILHLHCLKNWLERQQTCPICR 341

Length = 491

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	359
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.76
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.58
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.42
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.35
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.33
PHA02929	238	N1R/p28-like protein; Provisional	99.3
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.03
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	99.0
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.99
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.93
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.93
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.93
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.92
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.92
PHA02926	242	zinc finger-like protein; Provisional	98.76
PF14634	44	zf-RING_5: zinc-RING finger domain	98.76
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.73
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.72
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.72
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.67
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.67
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.66
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.62
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.48
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.48
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.4
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.35
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	98.29
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.23
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.17
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.16
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.13
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.06
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	97.89
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.86
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.86
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.81
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.77
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	97.74
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.64
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.54
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.54
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.51
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.29
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.23
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.07
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	97.06
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.05
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	96.95
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.89
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	96.72
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	96.63
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	96.48
PHA02862	156	5L protein; Provisional	96.45
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.42
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	96.4
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.33
PHA02825	162	LAP/PHD finger-like protein; Provisional	96.05
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	95.96
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	95.9
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.79
COG5152	259	Uncharacterized conserved protein, contains RING a	95.6
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	95.52
KOG1002	791	consensus Nucleotide excision repair protein RAD16	95.43
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	95.35
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	95.16
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	95.08
PHA03096	284	p28-like protein; Provisional	94.92
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	94.66
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	94.59
KOG3039	303	consensus Uncharacterized conserved protein [Funct	94.54
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	93.95
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	93.74
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	93.59
KOG2660	331	consensus Locus-specific chromosome binding protei	93.55
COG5222	427	Uncharacterized conserved protein, contains RING Z	93.36
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	92.29
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	92.22
KOG1940	276	consensus Zn-finger protein [General function pred	92.14
KOG1609	323	consensus Protein involved in mRNA turnover and st	91.62
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	91.16
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	90.78
COG5236	493	Uncharacterized conserved protein, contains RING Z	90.4
PF04641	260	Rtf2: Rtf2 RING-finger	89.02
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	88.54
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	88.49
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	88.43
KOG1001	674	consensus Helicase-like transcription factor HLTF/	88.35
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	87.84
KOG3053	293	consensus Uncharacterized conserved protein [Funct	87.26
KOG3002	299	consensus Zn finger protein [General function pred	85.87
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	85.73
KOG0298	1394	consensus DEAD box-containing helicase-like transc	84.48
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	84.28
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	84.14
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	83.34
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	83.05
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	82.53
COG5175	480	MOT2 Transcriptional repressor [Transcription]	81.83
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	81.65
KOG3899	381	consensus Uncharacterized conserved protein [Funct	81.6
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	80.41

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=8.4e-19  Score=169.90  Aligned_cols=78  Identities=35%  Similarity=0.779  Sum_probs=66.8

Q ss_pred             cCCCCCHHHhhcCCCceeeeccCcccccCCCCcccccccCCCccccccccCCCCccccccCCCccCCCceEEcCCCceeC
Q 018193          252 GQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDAECCICLSSYEDGTELHALPCNHHFH  331 (359)
Q Consensus       252 ~~~g~s~~~i~~Lp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH  331 (359)
                      +.++..+..++++|.+.|+...+++                          .. ..|+||||+|++||++|.|||+|.||
T Consensus       203 ~~~r~~k~~l~~~p~~~f~~~~~~~--------------------------~~-~~CaIClEdY~~GdklRiLPC~H~FH  255 (348)
T KOG4628|consen  203 RRNRLIKRLLKKLPVRTFTKGDDED--------------------------AT-DTCAICLEDYEKGDKLRILPCSHKFH  255 (348)
T ss_pred             hhhhhHHHHHhhCCcEEeccccccC--------------------------CC-ceEEEeecccccCCeeeEecCCCchh
Confidence            5567889999999999998755431                          11 58999999999999999999999999


Q ss_pred             hhhHHHhhhcCC-CCCcccccccCCC
Q 018193          332 STCIVKWLKMNA-TCPLCKYNILKGN  356 (359)
Q Consensus       332 ~~CId~WL~~~~-tCPlCR~~I~~~~  356 (359)
                      ..|||+||..+. .||+||+++.++.
T Consensus       256 ~~CIDpWL~~~r~~CPvCK~di~~~~  281 (348)
T KOG4628|consen  256 VNCIDPWLTQTRTFCPVCKRDIRTDS  281 (348)
T ss_pred             hccchhhHhhcCccCCCCCCcCCCCC
Confidence            999999998875 4999999998754

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.58  E-value=6.7e-16  Score=107.24  Aligned_cols=44  Identities=52%  Similarity=1.276  Sum_probs=40.9

Q ss_pred             ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCccc
Q 018193          306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCK  349 (359)
Q Consensus       306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR  349 (359)
                      ++|+||+++|++++.+..++|+|.||.+||.+|++.+.+||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            36999999999999999999999999999999999999999997

...

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=9.3e-14  Score=130.66  Aligned_cols=51  Identities=39%  Similarity=1.013  Sum_probs=47.5

Q ss_pred             CCccccccCCCccCCCceEEcCCCceeChhhHHHhhh-cCCCCCcccccccC
Q 018193          304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK-MNATCPLCKYNILK  354 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~-~~~tCPlCR~~I~~  354 (359)
                      .+.+|+|||++|-+++.++.|||+|.||..||++|+. .+..||+||.+|++
T Consensus       322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            3478999999999999999999999999999999997 78899999999875

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.35  E-value=5.7e-13  Score=102.69  Aligned_cols=45  Identities=49%  Similarity=1.061  Sum_probs=36.9

Q ss_pred             CccccccCCCccC----------CCceEEcCCCceeChhhHHHhhhcCCCCCccc
Q 018193          305 DAECCICLSSYED----------GTELHALPCNHHFHSTCIVKWLKMNATCPLCK  349 (359)
Q Consensus       305 ~~~C~ICL~~~~~----------~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR  349 (359)
                      ++.|+||++.|.+          +-.+...+|+|.||..||.+||+.+.+||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            4569999999942          23556668999999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=1.1e-12  Score=126.35  Aligned_cols=57  Identities=32%  Similarity=0.858  Sum_probs=47.5

Q ss_pred             cccccCCCCccccccCCC-ccCC---------CceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193          297 NERILLPEDAECCICLSS-YEDG---------TELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL  353 (359)
Q Consensus       297 ~~~~~~~~~~~C~ICL~~-~~~~---------~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~  353 (359)
                      .++++..+|..|.||+++ |+.+         ...++|||||+||..|++.|+++++|||.||.++.
T Consensus       279 t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i  345 (491)
T COG5243         279 TEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI  345 (491)
T ss_pred             hhhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence            344556778899999999 5543         24478999999999999999999999999999953

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.30  E-value=1.4e-12  Score=121.54  Aligned_cols=50  Identities=36%  Similarity=0.796  Sum_probs=41.9

Q ss_pred             CCccccccCCCccCCCc----eEE-cCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193          304 EDAECCICLSSYEDGTE----LHA-LPCNHHFHSTCIVKWLKMNATCPLCKYNIL  353 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~----lr~-LpC~H~FH~~CId~WL~~~~tCPlCR~~I~  353 (359)
                      .+.+|+||++.+.+++.    +.. ++|+|.||.+||++|++.+.+||+||.++.
T Consensus       173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~  227 (238)
T PHA02929        173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI  227 (238)
T ss_pred             CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence            45789999999876541    234 469999999999999999999999999875

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.03  E-value=2e-10  Score=103.30  Aligned_cols=50  Identities=34%  Similarity=0.753  Sum_probs=42.1

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc----------------CCCCCcccccccCC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM----------------NATCPLCKYNILKG  355 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~----------------~~tCPlCR~~I~~~  355 (359)
                      .++.+|+||++.++++   ..++|||.||..||.+|+..                ..+||+||.+|...
T Consensus        16 ~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~   81 (193)
T PLN03208         16 GGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA   81 (193)
T ss_pred             CCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence            4568899999998876   67899999999999999852                34799999998653

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=99.00  E-value=2.3e-10  Score=77.95  Aligned_cols=44  Identities=50%  Similarity=1.103  Sum_probs=37.1

Q ss_pred             cccccCCCccCCCceEEcCCCceeChhhHHHhhhc-CCCCCcccccc
Q 018193          307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM-NATCPLCKYNI  352 (359)
Q Consensus       307 ~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~-~~tCPlCR~~I  352 (359)
                      +|+||++.+  .+.+..++|+|.||..|+++|++. +..||.||..+
T Consensus         1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            499999998  344556669999999999999998 77899999864

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.99  E-value=2.3e-10  Score=81.47  Aligned_cols=46  Identities=39%  Similarity=0.875  Sum_probs=39.7

Q ss_pred             CccccccCCCccCCCceEEcCCCce-eChhhHHHhhhcCCCCCccccccc
Q 018193          305 DAECCICLSSYEDGTELHALPCNHH-FHSTCIVKWLKMNATCPLCKYNIL  353 (359)
Q Consensus       305 ~~~C~ICL~~~~~~~~lr~LpC~H~-FH~~CId~WL~~~~tCPlCR~~I~  353 (359)
                      +..|.||++...+   ...+||||. |+.+|+++|++.+.+||+||++|.
T Consensus         2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            4689999998654   588899999 999999999999999999999885

...

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=5.8e-10  Score=105.01  Aligned_cols=55  Identities=29%  Similarity=0.733  Sum_probs=47.3

Q ss_pred             ccccCCCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193          298 ERILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG  355 (359)
Q Consensus       298 ~~~~~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  355 (359)
                      +....+.+..|.+||+..+++   -.+||||+||..||..|+..++.||+||....+.
T Consensus       232 ~~~i~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ps  286 (293)
T KOG0317|consen  232 LSSIPEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQPS  286 (293)
T ss_pred             CccCCCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCCc
Confidence            334445667899999998877   7899999999999999999999999999987654

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.93  E-value=6.9e-10  Score=74.96  Aligned_cols=39  Identities=44%  Similarity=1.059  Sum_probs=33.8

Q ss_pred             ccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcc
Q 018193          308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLC  348 (359)
Q Consensus       308 C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlC  348 (359)
                      |+||++.+.+  .+..++|||.|+.+|+.+|++.+.+||.|
T Consensus         1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            8999998877  45788999999999999999999999998

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=2.4e-10  Score=119.13  Aligned_cols=56  Identities=34%  Similarity=0.816  Sum_probs=48.7

Q ss_pred             cCCCCccccccCCCccCCCc--eEEcCCCceeChhhHHHhhhcCCCCCcccccccCCC
Q 018193          301 LLPEDAECCICLSSYEDGTE--LHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN  356 (359)
Q Consensus       301 ~~~~~~~C~ICL~~~~~~~~--lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  356 (359)
                      ....+..|+||++++..+.+  .++|||+|+||..|+.+|+++.++||+||..+..++
T Consensus       287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~  344 (543)
T KOG0802|consen  287 LALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDYV  344 (543)
T ss_pred             hhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhccc
Confidence            44567899999999988665  689999999999999999999999999999665543

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.92  E-value=6.5e-10  Score=87.24  Aligned_cols=51  Identities=35%  Similarity=0.863  Sum_probs=40.1

Q ss_pred             CCCccccccCCCcc--------CCC--ceEEcCCCceeChhhHHHhhhc---CCCCCccccccc
Q 018193          303 PEDAECCICLSSYE--------DGT--ELHALPCNHHFHSTCIVKWLKM---NATCPLCKYNIL  353 (359)
Q Consensus       303 ~~~~~C~ICL~~~~--------~~~--~lr~LpC~H~FH~~CId~WL~~---~~tCPlCR~~I~  353 (359)
                      .+|+.|.||...|+        .|+  .+..-.|+|.||..||.+|+..   +++||+||++..
T Consensus        19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            34778999999997        222  3444459999999999999975   568999999764

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=8e-10  Score=101.24  Aligned_cols=51  Identities=29%  Similarity=0.633  Sum_probs=42.9

Q ss_pred             cCCCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcC---CCCCcccccccC
Q 018193          301 LLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN---ATCPLCKYNILK  354 (359)
Q Consensus       301 ~~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~---~tCPlCR~~I~~  354 (359)
                      ......+|.|||+.=+|+   ..+.|||.||..||.+||..+   +.||+||..|..
T Consensus        43 ~~~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~   96 (230)
T KOG0823|consen   43 RDGGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI   96 (230)
T ss_pred             CCCCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence            345668999999987776   778899999999999999864   468999998864

>PHA02926 zinc finger-like protein; Provisional

Probab=98.76  E-value=3.4e-09  Score=96.65  Aligned_cols=51  Identities=31%  Similarity=0.739  Sum_probs=38.3

Q ss_pred             CCCccccccCCCccCC-----CceEEc-CCCceeChhhHHHhhhcC------CCCCccccccc
Q 018193          303 PEDAECCICLSSYEDG-----TELHAL-PCNHHFHSTCIVKWLKMN------ATCPLCKYNIL  353 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~-----~~lr~L-pC~H~FH~~CId~WL~~~------~tCPlCR~~I~  353 (359)
                      +.+.+|+|||+..-+.     .....| +|+|.||..||++|.+.+      .+||+||..+.
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            4568999999986332     123355 599999999999999753      35999998653

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.76  E-value=4.7e-09  Score=72.81  Aligned_cols=44  Identities=27%  Similarity=0.769  Sum_probs=39.7

Q ss_pred             cccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccc
Q 018193          307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKY  350 (359)
Q Consensus       307 ~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~  350 (359)
                      .|.||+++|.+....+.++|||+|+..|+++.......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            49999999977778899999999999999999977779999985

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.73  E-value=6.4e-09  Score=70.69  Aligned_cols=39  Identities=49%  Similarity=1.185  Sum_probs=34.5

Q ss_pred             ccccCCCccCCCceEEcCCCceeChhhHHHhhh--cCCCCCcc
Q 018193          308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLK--MNATCPLC  348 (359)
Q Consensus       308 C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~--~~~tCPlC  348 (359)
                      |+||++.++++.  ..++|+|.|+..||.+|++  ....||+|
T Consensus         1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCC--EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999988774  5889999999999999998  45589998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=1.5e-08  Score=101.15  Aligned_cols=51  Identities=25%  Similarity=0.867  Sum_probs=40.8

Q ss_pred             CCccccccCCCccC--------------CCceEEcCCCceeChhhHHHhhh-cCCCCCcccccccC
Q 018193          304 EDAECCICLSSYED--------------GTELHALPCNHHFHSTCIVKWLK-MNATCPLCKYNILK  354 (359)
Q Consensus       304 ~~~~C~ICL~~~~~--------------~~~lr~LpC~H~FH~~CId~WL~-~~~tCPlCR~~I~~  354 (359)
                      ...+|+|||.+++-              ......+||+|+||..|+.+|+. .+-.||.||.+++.
T Consensus       570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            34679999999861              11234569999999999999999 66699999999864

>smart00184 RING Ring finger

Probab=98.72  E-value=7.8e-09  Score=67.88  Aligned_cols=38  Identities=53%  Similarity=1.162  Sum_probs=33.0

Q ss_pred             ccccCCCccCCCceEEcCCCceeChhhHHHhhh-cCCCCCcc
Q 018193          308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLK-MNATCPLC  348 (359)
Q Consensus       308 C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~-~~~tCPlC  348 (359)
                      |+||++.   .+....++|+|.||..|+++|++ .+.+||+|
T Consensus         1 C~iC~~~---~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEE---LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccC---CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            7899988   34568899999999999999998 66789998

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=1e-08  Score=90.44  Aligned_cols=50  Identities=34%  Similarity=0.665  Sum_probs=42.6

Q ss_pred             CccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193          305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG  355 (359)
Q Consensus       305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  355 (359)
                      ..-|+|||+.|++... .-+.|||+||++||+.-++....||+|++.|...
T Consensus       131 ~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k  180 (187)
T KOG0320|consen  131 TYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK  180 (187)
T ss_pred             ccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence            3679999999987643 3467999999999999999999999999877653

>smart00504 Ubox Modified RING finger domain

Probab=98.67  E-value=2.2e-08  Score=74.13  Aligned_cols=46  Identities=26%  Similarity=0.427  Sum_probs=41.5

Q ss_pred             ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193          306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK  354 (359)
Q Consensus       306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~  354 (359)
                      ..|+||.+-++++   ..+||||.|...||.+|++.+.+||.|+.++..
T Consensus         2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~   47 (63)
T smart00504        2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH   47 (63)
T ss_pred             cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence            4699999999987   678999999999999999999999999988744

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=1.4e-08  Score=94.76  Aligned_cols=51  Identities=33%  Similarity=0.734  Sum_probs=43.7

Q ss_pred             CCCccccccCCCccCCC-------ceEEcCCCceeChhhHHHhh--hcCCCCCccccccc
Q 018193          303 PEDAECCICLSSYEDGT-------ELHALPCNHHFHSTCIVKWL--KMNATCPLCKYNIL  353 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~-------~lr~LpC~H~FH~~CId~WL--~~~~tCPlCR~~I~  353 (359)
                      .+|..|+||=..+...+       ...+|.|+|.||..||+.|.  ..++|||-||..+.
T Consensus       222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd  281 (328)
T KOG1734|consen  222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD  281 (328)
T ss_pred             CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence            46778999999987655       77899999999999999996  56889999998664

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.62  E-value=2.1e-08  Score=68.92  Aligned_cols=38  Identities=39%  Similarity=0.982  Sum_probs=30.5

Q ss_pred             ccccCCCccCCCceEEcCCCceeChhhHHHhhhcC----CCCCcc
Q 018193          308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN----ATCPLC  348 (359)
Q Consensus       308 C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~----~tCPlC  348 (359)
                      |+||++-|.++   ..|+|||.|+..||.+|.+..    ..||.|
T Consensus         1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999998   889999999999999999764    369988

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.48  E-value=6.8e-08  Score=96.39  Aligned_cols=50  Identities=28%  Similarity=0.630  Sum_probs=43.7

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG  355 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  355 (359)
                      .....|+||++.|.+.   ..++|+|.||..||..|+.....||+||..+...
T Consensus        24 e~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~   73 (397)
T TIGR00599        24 DTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES   73 (397)
T ss_pred             ccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence            4557899999999876   5789999999999999999888999999987653

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.48  E-value=8.2e-08  Score=68.24  Aligned_cols=42  Identities=31%  Similarity=0.816  Sum_probs=33.7

Q ss_pred             cccccCCCccCCCceEEcCCC-----ceeChhhHHHhhhcC--CCCCccc
Q 018193          307 ECCICLSSYEDGTELHALPCN-----HHFHSTCIVKWLKMN--ATCPLCK  349 (359)
Q Consensus       307 ~C~ICL~~~~~~~~lr~LpC~-----H~FH~~CId~WL~~~--~tCPlCR  349 (359)
                      .|-||++ .+++++....||.     |.+|.+|+++|+..+  .+||+|+
T Consensus         1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4899999 4445555688985     999999999999654  4899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.40  E-value=1.7e-07  Score=72.12  Aligned_cols=48  Identities=35%  Similarity=0.844  Sum_probs=36.3

Q ss_pred             ccccccCCCc-----------cCCCceEEc--CCCceeChhhHHHhhhcCCCCCccccccc
Q 018193          306 AECCICLSSY-----------EDGTELHAL--PCNHHFHSTCIVKWLKMNATCPLCKYNIL  353 (359)
Q Consensus       306 ~~C~ICL~~~-----------~~~~~lr~L--pC~H~FH~~CId~WL~~~~tCPlCR~~I~  353 (359)
                      +.|+||...|           ..+++....  -|+|.||..||.+||..++.||++|+...
T Consensus        21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~   81 (88)
T COG5194          21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV   81 (88)
T ss_pred             chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence            4566666554           345554333  39999999999999999999999998653

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=8.4e-08  Score=73.12  Aligned_cols=50  Identities=34%  Similarity=0.921  Sum_probs=37.4

Q ss_pred             CCCccccccCCCcc--------CCCceEEc--CCCceeChhhHHHhhhc---CCCCCcccccc
Q 018193          303 PEDAECCICLSSYE--------DGTELHAL--PCNHHFHSTCIVKWLKM---NATCPLCKYNI  352 (359)
Q Consensus       303 ~~~~~C~ICL~~~~--------~~~~lr~L--pC~H~FH~~CId~WL~~---~~tCPlCR~~I  352 (359)
                      ..++.|.||...|+        .++....+  -|.|.||..||.+|+..   ++.||+||+..
T Consensus        18 ~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~   80 (84)
T KOG1493|consen   18 APDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW   80 (84)
T ss_pred             CCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence            34558999999997        23332222  39999999999999965   44799999865

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=98.29  E-value=2e-07  Score=71.20  Aligned_cols=49  Identities=33%  Similarity=0.773  Sum_probs=23.9

Q ss_pred             CccccccCCCccCCCceEEc-----CCCceeChhhHHHhhhc-----------CCCCCccccccc
Q 018193          305 DAECCICLSSYEDGTELHAL-----PCNHHFHSTCIVKWLKM-----------NATCPLCKYNIL  353 (359)
Q Consensus       305 ~~~C~ICL~~~~~~~~lr~L-----pC~H~FH~~CId~WL~~-----------~~tCPlCR~~I~  353 (359)
                      +.+|.||.+...+++++..+     .|++.||..|+.+||..           ..+||.|+.+|.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            35799999987744433222     38999999999999963           136999999874

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.23  E-value=7.7e-07  Score=61.48  Aligned_cols=38  Identities=34%  Similarity=0.794  Sum_probs=22.8

Q ss_pred             ccccCCCccCCC-ceEEcCCCceeChhhHHHhhhcCC----CCC
Q 018193          308 CCICLSSYEDGT-ELHALPCNHHFHSTCIVKWLKMNA----TCP  346 (359)
Q Consensus       308 C~ICL~~~~~~~-~lr~LpC~H~FH~~CId~WL~~~~----tCP  346 (359)
                      |+||.+ |.+++ .-+.|+|||.|..+||+++++.+.    +||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 86544 457899999999999999998542    577

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.17  E-value=3.6e-07  Score=97.16  Aligned_cols=50  Identities=36%  Similarity=0.973  Sum_probs=39.4

Q ss_pred             cCCCCccccccCCCcc-CCCceEEcC------CCceeChhhHHHhhhcC--CCCCccccccc
Q 018193          301 LLPEDAECCICLSSYE-DGTELHALP------CNHHFHSTCIVKWLKMN--ATCPLCKYNIL  353 (359)
Q Consensus       301 ~~~~~~~C~ICL~~~~-~~~~lr~Lp------C~H~FH~~CId~WL~~~--~tCPlCR~~I~  353 (359)
                      ..+...||+||..-.. .+   |.||      |.|.||..|+.+|++.+  .+||+||..|+
T Consensus      1465 ~fsG~eECaICYsvL~~vd---r~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1465 KFSGHEECAICYSVLDMVD---RSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             hcCCcchhhHHHHHHHHHh---ccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            3455679999998775 22   4554      78999999999999864  58999998875

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=8.2e-07  Score=83.00  Aligned_cols=51  Identities=31%  Similarity=0.783  Sum_probs=43.1

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHH-hhhcCCC-CCcccccccCCC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVK-WLKMNAT-CPLCKYNILKGN  356 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~-WL~~~~t-CPlCR~~I~~~~  356 (359)
                      ..|..|.||++..+..   ..+||||+|+..||-. |-+.+.. ||+||+.+..++
T Consensus       213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~  265 (271)
T COG5574         213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK  265 (271)
T ss_pred             ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence            3467899999987776   7889999999999999 9877776 999998776543

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=1.4e-06  Score=88.11  Aligned_cols=49  Identities=29%  Similarity=0.721  Sum_probs=40.0

Q ss_pred             CccccccCCCccCCCceEEcCCCceeChhhHHHhhhcC-----CCCCcccccccCCC
Q 018193          305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN-----ATCPLCKYNILKGN  356 (359)
Q Consensus       305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~-----~tCPlCR~~I~~~~  356 (359)
                      +..|+|||+...-+   ..+.|||+||..||-+.+...     ..||+|+..|..+|
T Consensus       186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd  239 (513)
T KOG2164|consen  186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD  239 (513)
T ss_pred             CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence            78999999986665   445599999999999988654     37999999886643

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.06  E-value=2e-06  Score=66.14  Aligned_cols=48  Identities=23%  Similarity=0.459  Sum_probs=38.7

Q ss_pred             CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc-CCCCCcccccccC
Q 018193          304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM-NATCPLCKYNILK  354 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~-~~tCPlCR~~I~~  354 (359)
                      +...|+||.+-+.++   ..+||||.|-..||.+|++. +.+||+|+.++..
T Consensus         3 ~~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~   51 (73)
T PF04564_consen    3 DEFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE   51 (73)
T ss_dssp             GGGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred             cccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence            446799999999998   78899999999999999998 8899999988765

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=5.3e-06  Score=66.95  Aligned_cols=47  Identities=36%  Similarity=0.767  Sum_probs=34.7

Q ss_pred             CccccccCCCcc------------CCCceEEc--CCCceeChhhHHHhhhcCCCCCccccc
Q 018193          305 DAECCICLSSYE------------DGTELHAL--PCNHHFHSTCIVKWLKMNATCPLCKYN  351 (359)
Q Consensus       305 ~~~C~ICL~~~~------------~~~~lr~L--pC~H~FH~~CId~WL~~~~tCPlCR~~  351 (359)
                      -+.|+||..-+-            ..++...-  -|+|-||..||.+||+.++.||||.++
T Consensus        46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~e  106 (114)
T KOG2930|consen   46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKE  106 (114)
T ss_pred             echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence            356999874331            22333222  499999999999999999999999764

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.86  E-value=5.5e-06  Score=82.47  Aligned_cols=49  Identities=35%  Similarity=0.980  Sum_probs=39.6

Q ss_pred             CCCccccccCCCccCCC-ceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193          303 PEDAECCICLSSYEDGT-ELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL  353 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~-~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~  353 (359)
                      -|-..|++||+.+.+.. .++...|+|-||..|+.+|-  ..+||+||+-..
T Consensus       173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~  222 (493)
T KOG0804|consen  173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS  222 (493)
T ss_pred             ccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence            45578999999997654 45666799999999999994  568999998544

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.86  E-value=3e-06  Score=80.43  Aligned_cols=52  Identities=27%  Similarity=0.802  Sum_probs=44.8

Q ss_pred             ccccccCCCccCCCceEEcCCCceeChhhHHHhhh-----------------------cCCCCCcccccccCCCC
Q 018193          306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK-----------------------MNATCPLCKYNILKGNE  357 (359)
Q Consensus       306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~-----------------------~~~tCPlCR~~I~~~~~  357 (359)
                      .+|.|||..|.++++..+++|.|.||..|+.+.|.                       ....||+||..|..+.+
T Consensus       116 gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~  190 (368)
T KOG4445|consen  116 GQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEEN  190 (368)
T ss_pred             CceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccc
Confidence            57999999999999999999999999999998873                       13369999999876554

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.81  E-value=2.9e-06  Score=88.99  Aligned_cols=49  Identities=27%  Similarity=0.519  Sum_probs=44.4

Q ss_pred             ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193          306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK  354 (359)
Q Consensus       306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~  354 (359)
                      ..|++|+..+.++...-..+|+|.||..||+.|-+.-+|||+||..+.+
T Consensus       124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence            4699999999999888888899999999999999999999999986643

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=7.5e-06  Score=76.53  Aligned_cols=45  Identities=31%  Similarity=0.839  Sum_probs=40.3

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccc
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKY  350 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~  350 (359)
                      .+...|+||++.|.+.   +.+||+|.|+..|+..+......||.||.
T Consensus        11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             cccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence            4567899999999998   89999999999999999885568999993

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=97.74  E-value=8.2e-06  Score=78.64  Aligned_cols=46  Identities=33%  Similarity=0.784  Sum_probs=42.4

Q ss_pred             ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193          306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK  354 (359)
Q Consensus       306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~  354 (359)
                      ..|.||.+=|..+   ..+||+|-||.-||.+.|..+..||+|+.++.+
T Consensus        24 LRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E   69 (442)
T KOG0287|consen   24 LRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE   69 (442)
T ss_pred             HHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccch
Confidence            5699999999887   888999999999999999999999999988765

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=3.7e-05  Score=74.97  Aligned_cols=49  Identities=35%  Similarity=0.718  Sum_probs=41.2

Q ss_pred             CCCccccccCCCccCCCceEEcCCCce-eChhhHHHhhhcCCCCCcccccccC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHH-FHSTCIVKWLKMNATCPLCKYNILK  354 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~-FH~~CId~WL~~~~tCPlCR~~I~~  354 (359)
                      ++..+|.|||++-.+-   ..|||.|. .|..|-+.---.++.||+||++|..
T Consensus       288 ~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  288 ESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE  337 (349)
T ss_pred             cCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence            5578999999987765   89999996 6889998876678889999998854

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.54  E-value=3.6e-05  Score=72.91  Aligned_cols=45  Identities=29%  Similarity=0.613  Sum_probs=40.6

Q ss_pred             ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193          306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL  353 (359)
Q Consensus       306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~  353 (359)
                      ..|-||-+-|..+   ..++|||-||.-||..-|..+.-||+||.+..
T Consensus        26 lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~   70 (391)
T COG5432          26 LRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDPC   70 (391)
T ss_pred             HHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccHH
Confidence            4699999988877   77889999999999999999999999998754

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=3.5e-05  Score=75.82  Aligned_cols=50  Identities=34%  Similarity=0.911  Sum_probs=38.7

Q ss_pred             CCCccccccCCCccCCC----ceEEcC-CCceeChhhHHHhh--hc-----CCCCCcccccc
Q 018193          303 PEDAECCICLSSYEDGT----ELHALP-CNHHFHSTCIVKWL--KM-----NATCPLCKYNI  352 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~----~lr~Lp-C~H~FH~~CId~WL--~~-----~~tCPlCR~~I  352 (359)
                      ..+.+|.||++..-+..    ....|| |+|.|+..||++|-  ++     +..||.||...
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s  220 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS  220 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence            45689999999876543    123456 99999999999998  33     46799999754

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=1e-05  Score=78.55  Aligned_cols=51  Identities=31%  Similarity=0.619  Sum_probs=42.1

Q ss_pred             CCCccccccCCCccCCCceEEcC-CCceeChhhHHHhhhc-CCCCCcccccccCCC
Q 018193          303 PEDAECCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKM-NATCPLCKYNILKGN  356 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~Lp-C~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~  356 (359)
                      ..+..|+|||+-+...   +..+ |.|-||.+||.+-++. +++||.||+.+..+.
T Consensus        41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr   93 (381)
T KOG0311|consen   41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR   93 (381)
T ss_pred             hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence            3457899999988765   5555 9999999999999976 669999999887653

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.29  E-value=6.1e-05  Score=73.93  Aligned_cols=46  Identities=37%  Similarity=0.837  Sum_probs=39.5

Q ss_pred             CccccccCCCcc-CCCceEEcCCCceeChhhHHHhhhcCC--CCCcccc
Q 018193          305 DAECCICLSSYE-DGTELHALPCNHHFHSTCIVKWLKMNA--TCPLCKY  350 (359)
Q Consensus       305 ~~~C~ICL~~~~-~~~~lr~LpC~H~FH~~CId~WL~~~~--tCPlCR~  350 (359)
                      +.-|..|=+.|. .++.+-.|||.|+||..|+.+.|.++.  +||.||+
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            346999999985 556788999999999999999998876  7999983

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.23  E-value=0.00012  Score=54.46  Aligned_cols=49  Identities=27%  Similarity=0.624  Sum_probs=23.8

Q ss_pred             ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCCCCC
Q 018193          306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQ  358 (359)
Q Consensus       306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~  358 (359)
                      ..|++|.+-++++  +-.-.|.|.|++.||..-+.  ..||+|+.+--..|-+
T Consensus         8 LrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~   56 (65)
T PF14835_consen    8 LRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQ   56 (65)
T ss_dssp             TS-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS--
T ss_pred             cCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHH
Confidence            4699999987766  23345999999999988544  4599999887555543

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.00025  Score=71.18  Aligned_cols=49  Identities=29%  Similarity=0.797  Sum_probs=43.6

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK  354 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~  354 (359)
                      ..+.+|+||+..+.+.   ..+||||.|+..||++=+.++..||+||.++.+
T Consensus        82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCccccccccc
Confidence            5678999999988877   677999999999999988888899999998874

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=97.06  E-value=0.00017  Score=61.55  Aligned_cols=36  Identities=19%  Similarity=0.509  Sum_probs=32.0

Q ss_pred             CCccccccCCCccCCCceEEcCCC------ceeChhhHHHhh
Q 018193          304 EDAECCICLSSYEDGTELHALPCN------HHFHSTCIVKWL  339 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr~LpC~------H~FH~~CId~WL  339 (359)
                      ...||.||++.+.+++.+..++|+      |.||.+|+.+|=
T Consensus        25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~   66 (134)
T PF05883_consen   25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR   66 (134)
T ss_pred             cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence            357899999999997788888887      999999999994

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.00011  Score=52.81  Aligned_cols=46  Identities=26%  Similarity=0.571  Sum_probs=32.7

Q ss_pred             CccccccCCCccCCCceEEcCCCce-eChhhH-HHhhhcCCCCCccccccc
Q 018193          305 DAECCICLSSYEDGTELHALPCNHH-FHSTCI-VKWLKMNATCPLCKYNIL  353 (359)
Q Consensus       305 ~~~C~ICL~~~~~~~~lr~LpC~H~-FH~~CI-d~WL~~~~tCPlCR~~I~  353 (359)
                      ++||.||++.-.+.   ....|||. .+-+|- +.|-..+.+||+||++|.
T Consensus         7 ~dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    7 SDECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             ccceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            47899999875554   33459996 345564 445447889999999874

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=96.95  E-value=0.00044  Score=76.82  Aligned_cols=52  Identities=31%  Similarity=0.656  Sum_probs=43.2

Q ss_pred             CCCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcC----------CCCCccccccc
Q 018193          302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN----------ATCPLCKYNIL  353 (359)
Q Consensus       302 ~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~----------~tCPlCR~~I~  353 (359)
                      ...|+.|-||+.+--......+|.|+|+||.+|...-|++.          -.||+|+.+|.
T Consensus      3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred             cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence            34567899999988788888999999999999998777542          27999998874

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.89  E-value=0.0005  Score=69.23  Aligned_cols=52  Identities=27%  Similarity=0.715  Sum_probs=44.1

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCCC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN  356 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  356 (359)
                      .++..|+||.....++-..  +.|||.|+..|+.+|+..++.||.|+..+...+
T Consensus        19 ~~~l~C~~C~~vl~~p~~~--~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~   70 (391)
T KOG0297|consen   19 DENLLCPICMSVLRDPVQT--TTCGHRFCAGCLLESLSNHQKCPVCRQELTQAE   70 (391)
T ss_pred             cccccCccccccccCCCCC--CCCCCcccccccchhhccCcCCcccccccchhh
Confidence            5567899999999988322  579999999999999999999999988776543

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=96.72  E-value=0.00055  Score=67.56  Aligned_cols=45  Identities=29%  Similarity=0.853  Sum_probs=37.1

Q ss_pred             cccccCCCccCCCceEEcCCCceeChhhHHHhhhc--CCCCCcccccccC
Q 018193          307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM--NATCPLCKYNILK  354 (359)
Q Consensus       307 ~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~--~~tCPlCR~~I~~  354 (359)
                      -|-||-+.   +..++.=||||..|..|+..|-..  .++||.||.+|..
T Consensus       371 LCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG  417 (563)
T KOG1785|consen  371 LCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG  417 (563)
T ss_pred             HHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence            59999775   445678899999999999999743  6799999998753

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.63  E-value=0.00084  Score=58.75  Aligned_cols=38  Identities=34%  Similarity=0.757  Sum_probs=33.5

Q ss_pred             ccccccCCCCccccccCCCccCCCceEEcCCCceeChh
Q 018193          296 ANERILLPEDAECCICLSSYEDGTELHALPCNHHFHST  333 (359)
Q Consensus       296 ~~~~~~~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~  333 (359)
                      -+++++..+.-||.|||++++.++.+..|||-.+||+.
T Consensus       168 YNdDVL~ddkGECvICLEdL~~GdtIARLPCLCIYHK~  205 (205)
T KOG0801|consen  168 YNDDVLKDDKGECVICLEDLEAGDTIARLPCLCIYHKQ  205 (205)
T ss_pred             cccchhcccCCcEEEEhhhccCCCceeccceEEEeecC
Confidence            35667777778999999999999999999999999974

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=96.48  E-value=0.0019  Score=45.42  Aligned_cols=40  Identities=33%  Similarity=0.937  Sum_probs=27.8

Q ss_pred             ccccCCCccCCCceEEcCCC-----ceeChhhHHHhhhc--CCCCCcc
Q 018193          308 CCICLSSYEDGTELHALPCN-----HHFHSTCIVKWLKM--NATCPLC  348 (359)
Q Consensus       308 C~ICL~~~~~~~~lr~LpC~-----H~FH~~CId~WL~~--~~tCPlC  348 (359)
                      |-||+++-++++ .-..||+     -..|.+|+.+|+..  +.+|++|
T Consensus         1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            679999877665 3446764     48999999999974  4579988

>PHA02862 5L protein; Provisional

Probab=96.45  E-value=0.0017  Score=55.95  Aligned_cols=43  Identities=26%  Similarity=0.675  Sum_probs=33.3

Q ss_pred             ccccccCCCccCCCceEEcCCC-----ceeChhhHHHhhhcC--CCCCcccccc
Q 018193          306 AECCICLSSYEDGTELHALPCN-----HHFHSTCIVKWLKMN--ATCPLCKYNI  352 (359)
Q Consensus       306 ~~C~ICL~~~~~~~~lr~LpC~-----H~FH~~CId~WL~~~--~tCPlCR~~I  352 (359)
                      +.|=||.++-+++    .-||.     ..-|.+|+.+|++.+  .+||+||.+.
T Consensus         3 diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY   52 (156)
T PHA02862          3 DICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY   52 (156)
T ss_pred             CEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence            5799999985433    35754     789999999999754  4799999764

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.42  E-value=0.0018  Score=47.43  Aligned_cols=41  Identities=27%  Similarity=0.734  Sum_probs=28.6

Q ss_pred             CccccccCCCccCCCceEEcCCCceeChhhHHHhhhc--CCCCCc
Q 018193          305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM--NATCPL  347 (359)
Q Consensus       305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~--~~tCPl  347 (359)
                      +..|+|.+..|+++  ++...|+|.|-++.|.+|++.  ...||.
T Consensus        11 ~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   11 SLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             -SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             ccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            35799999998865  566789999999999999954  347998

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.40  E-value=0.0025  Score=58.64  Aligned_cols=53  Identities=25%  Similarity=0.580  Sum_probs=43.0

Q ss_pred             CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc--------CCCCCcccccccCCCC
Q 018193          304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM--------NATCPLCKYNILKGNE  357 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~--------~~tCPlCR~~I~~~~~  357 (359)
                      .+..|..|-...+.+|.+| |-|-|.||.+|+++|--.        .-.||.|-.+|++..+
T Consensus        49 Y~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~N  109 (299)
T KOG3970|consen   49 YNPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPIN  109 (299)
T ss_pred             CCCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcc
Confidence            3456999999999888755 679999999999999743        2369999999987544

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.33  E-value=0.00088  Score=71.07  Aligned_cols=49  Identities=20%  Similarity=0.586  Sum_probs=39.4

Q ss_pred             CccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC-CCCcccccccCCC
Q 018193          305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA-TCPLCKYNILKGN  356 (359)
Q Consensus       305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~-tCPlCR~~I~~~~  356 (359)
                      -..|+.|-....+-   ..+.|+|.||.+||.+-+...+ .||.|-.++...|
T Consensus       643 ~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD  692 (698)
T KOG0978|consen  643 LLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND  692 (698)
T ss_pred             ceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence            35799999776664   4555999999999999997655 7999998887654

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=96.05  E-value=0.0044  Score=54.32  Aligned_cols=46  Identities=26%  Similarity=0.712  Sum_probs=34.1

Q ss_pred             CCCccccccCCCccCCCceEEcCCC--c---eeChhhHHHhhhcC--CCCCcccccc
Q 018193          303 PEDAECCICLSSYEDGTELHALPCN--H---HFHSTCIVKWLKMN--ATCPLCKYNI  352 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~--H---~FH~~CId~WL~~~--~tCPlCR~~I  352 (359)
                      ..+.+|=||.++..  ++  .-||.  .   .-|.+|+.+|+..+  .+||+|+++.
T Consensus         6 ~~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y   58 (162)
T PHA02825          6 LMDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY   58 (162)
T ss_pred             CCCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence            45678999998843  22  24754  4   67999999999764  4799998754

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=95.96  E-value=0.0039  Score=50.53  Aligned_cols=36  Identities=25%  Similarity=0.756  Sum_probs=29.7

Q ss_pred             cCCCCccccccCCCccCCCceEEcCCCceeChhhHHH
Q 018193          301 LLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVK  337 (359)
Q Consensus       301 ~~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~  337 (359)
                      ...++..|++|-..+.. ......||||+||..|+++
T Consensus        74 ~i~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~r  109 (109)
T PF10367_consen   74 VITESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIKR  109 (109)
T ss_pred             EECCCCCccCcCCcCCC-ceEEEeCCCeEEecccccC
Confidence            34556789999999977 5678889999999999863

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.90  E-value=0.0032  Score=62.64  Aligned_cols=47  Identities=28%  Similarity=0.716  Sum_probs=39.1

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcC--------CCCCccc
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN--------ATCPLCK  349 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~--------~tCPlCR  349 (359)
                      ....+|+||+++.....-...|||+|+|++.|+...+.+.        -.||-|+
T Consensus       182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~  236 (445)
T KOG1814|consen  182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK  236 (445)
T ss_pred             hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence            3456899999998887889999999999999999999642        2688764

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.79  E-value=0.0043  Score=43.77  Aligned_cols=43  Identities=21%  Similarity=0.595  Sum_probs=21.3

Q ss_pred             ccccCCCccCCCceEEcC--CCceeChhhHHHhhh-cCCCCCccccc
Q 018193          308 CCICLSSYEDGTELHALP--CNHHFHSTCIVKWLK-MNATCPLCKYN  351 (359)
Q Consensus       308 C~ICL~~~~~~~~lr~Lp--C~H~FH~~CId~WL~-~~~tCPlCR~~  351 (359)
                      |++|.+++... ....+|  |++..+..|...-++ .++.||-||.+
T Consensus         1 cp~C~e~~d~~-d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~   46 (48)
T PF14570_consen    1 CPLCDEELDET-DKDFYPCECGFQICRFCYHDILENEGGRCPGCREP   46 (48)
T ss_dssp             -TTTS-B--CC-CTT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred             CCCcccccccC-CCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence            78999998332 234455  889999999777775 47799999975

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.60  E-value=0.0036  Score=56.55  Aligned_cols=42  Identities=29%  Similarity=0.670  Sum_probs=37.7

Q ss_pred             cccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCccccc
Q 018193          307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYN  351 (359)
Q Consensus       307 ~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~  351 (359)
                      .|.||-.+|+.+   ..+.|||+||..|.-+=++...+|-.|-+.
T Consensus       198 ~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~  239 (259)
T COG5152         198 LCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKA  239 (259)
T ss_pred             eehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchh
Confidence            699999999987   677899999999999988888999999654

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=95.52  E-value=0.0053  Score=65.86  Aligned_cols=50  Identities=32%  Similarity=0.765  Sum_probs=38.9

Q ss_pred             cCCCCccccccCCCccCCCceEEc-CCCceeChhhHHHhhhcCC-------CCCcccc
Q 018193          301 LLPEDAECCICLSSYEDGTELHAL-PCNHHFHSTCIVKWLKMNA-------TCPLCKY  350 (359)
Q Consensus       301 ~~~~~~~C~ICL~~~~~~~~lr~L-pC~H~FH~~CId~WL~~~~-------tCPlCR~  350 (359)
                      +..+..+|.||.+.+...+.+--- .|-|+||..||.+|-+...       .||.|+.
T Consensus       187 l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs  244 (950)
T KOG1952|consen  187 LSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS  244 (950)
T ss_pred             HhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence            445678999999999877665433 3889999999999986421       5999984

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=95.43  E-value=0.005  Score=62.94  Aligned_cols=48  Identities=31%  Similarity=0.748  Sum_probs=38.1

Q ss_pred             CCccccccCCCccCCCceEEcCCCceeChhhHHHhhh-----cCCCCCcccccccC
Q 018193          304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK-----MNATCPLCKYNILK  354 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~-----~~~tCPlCR~~I~~  354 (359)
                      +..+|.+|-+.-++.   .+..|.|.||.-||.++..     .+.|||.|...+.-
T Consensus       535 ~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi  587 (791)
T KOG1002|consen  535 GEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI  587 (791)
T ss_pred             CceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence            456899998875554   6778999999999998874     35699999877643

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.35  E-value=0.013  Score=57.54  Aligned_cols=44  Identities=27%  Similarity=0.654  Sum_probs=33.0

Q ss_pred             CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193          304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL  353 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~  353 (359)
                      -...|.||+++..+   ...+||||.-+  |..-- +...+||+||+.|.
T Consensus       304 ~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~  347 (355)
T KOG1571|consen  304 QPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR  347 (355)
T ss_pred             CCCceEEecCCccc---eeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence            34579999998776   48899999965  66554 33445999998774

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.16  E-value=0.00093  Score=65.80  Aligned_cols=51  Identities=25%  Similarity=0.606  Sum_probs=45.6

Q ss_pred             CccccccCCCccCC-CceEEcCCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193          305 DAECCICLSSYEDG-TELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG  355 (359)
Q Consensus       305 ~~~C~ICL~~~~~~-~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  355 (359)
                      ...|+||..+|..+ +.+..+-|||.+|.+||.+||.....||.|++.+...
T Consensus       196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~  247 (465)
T KOG0827|consen  196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKN  247 (465)
T ss_pred             HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence            35699999999888 7888899999999999999999988999999988653

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.08  E-value=0.024  Score=53.75  Aligned_cols=50  Identities=28%  Similarity=0.438  Sum_probs=37.9

Q ss_pred             CCCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc--CCCCCccccccc
Q 018193          302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM--NATCPLCKYNIL  353 (359)
Q Consensus       302 ~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~--~~tCPlCR~~I~  353 (359)
                      ...+.+|++|-+.=..  .-...+|+|+||-.||.+=+.-  +-+||.|-.++.
T Consensus       236 ~t~~~~C~~Cg~~Pti--P~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  236 GTSDTECPVCGEPPTI--PHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             ccCCceeeccCCCCCC--CeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            3567899999776332  3345569999999999987654  359999988765

>PHA03096 p28-like protein; Provisional

Probab=94.92  E-value=0.0096  Score=57.44  Aligned_cols=44  Identities=27%  Similarity=0.514  Sum_probs=32.3

Q ss_pred             ccccccCCCccCC----CceEEcC-CCceeChhhHHHhhhcCC---CCCccc
Q 018193          306 AECCICLSSYEDG----TELHALP-CNHHFHSTCIVKWLKMNA---TCPLCK  349 (359)
Q Consensus       306 ~~C~ICL~~~~~~----~~lr~Lp-C~H~FH~~CId~WL~~~~---tCPlCR  349 (359)
                      .+|.||++.....    ..-..|+ |.|.|+..||..|-..+.   +||.||
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~  230 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR  230 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence            7899999987643    2334677 999999999999986432   455544

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.66  E-value=0.018  Score=55.12  Aligned_cols=44  Identities=23%  Similarity=0.538  Sum_probs=39.2

Q ss_pred             ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccc
Q 018193          306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI  352 (359)
Q Consensus       306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I  352 (359)
                      ..|-||...|..+   ..+.|+|.|+..|--+=++....|++|-+.+
T Consensus       242 f~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t  285 (313)
T KOG1813|consen  242 FKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQT  285 (313)
T ss_pred             ccccccccccccc---hhhcCCceeehhhhccccccCCcceeccccc
Confidence            3599999999988   7788999999999999889899999997754

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=94.59  E-value=0.056  Score=52.54  Aligned_cols=47  Identities=26%  Similarity=0.585  Sum_probs=37.1

Q ss_pred             ccCCCCccccccCCCccCCCceEEcC-CCceeChhhHHHhhhcCCCCCccc
Q 018193          300 ILLPEDAECCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKMNATCPLCK  349 (359)
Q Consensus       300 ~~~~~~~~C~ICL~~~~~~~~lr~Lp-C~H~FH~~CId~WL~~~~tCPlCR  349 (359)
                      .+..+...|++|+.+-.++.   .+. -|-+||-.||-+.++.++.||+=-
T Consensus       295 ~l~~~~~~CpvClk~r~Npt---vl~vSGyVfCY~Ci~~Yv~~~~~CPVT~  342 (357)
T KOG0826|consen  295 LLPPDREVCPVCLKKRQNPT---VLEVSGYVFCYPCIFSYVVNYGHCPVTG  342 (357)
T ss_pred             cCCCccccChhHHhccCCCc---eEEecceEEeHHHHHHHHHhcCCCCccC
Confidence            34456678999999976652   333 489999999999999999999843

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.54  E-value=0.039  Score=51.63  Aligned_cols=53  Identities=13%  Similarity=0.262  Sum_probs=46.7

Q ss_pred             CCccccccCCCccCCCceEEcC-CCceeChhhHHHhhhcCCCCCcccccccCCC
Q 018193          304 EDAECCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKMNATCPLCKYNILKGN  356 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr~Lp-C~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  356 (359)
                      ....|+||.+.+.+...+..|. |||+|..+|+++-++....||+|-.++-+.|
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd  273 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD  273 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence            5578999999999998888775 9999999999999999999999988776544

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.95  E-value=0.032  Score=55.58  Aligned_cols=33  Identities=42%  Similarity=0.946  Sum_probs=25.8

Q ss_pred             CceEEcCCCceeChhhHHHhhhc--CCCCCccccc
Q 018193          319 TELHALPCNHHFHSTCIVKWLKM--NATCPLCKYN  351 (359)
Q Consensus       319 ~~lr~LpC~H~FH~~CId~WL~~--~~tCPlCR~~  351 (359)
                      .-+..|.|+|.|-.+||++||.+  ...||.|+..
T Consensus        20 hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k   54 (463)
T KOG1645|consen   20 HRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK   54 (463)
T ss_pred             eEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence            34566779999999999999952  2369999754

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=93.74  E-value=0.042  Score=39.78  Aligned_cols=47  Identities=26%  Similarity=0.574  Sum_probs=34.5

Q ss_pred             ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCCCC
Q 018193          306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNE  357 (359)
Q Consensus       306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~  357 (359)
                      ..|..|...   +..-..+||+|+-...|.+-  .+-+-||.|.+++..++.
T Consensus         8 ~~~~~~~~~---~~~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~~~   54 (55)
T PF14447_consen    8 QPCVFCGFV---GTKGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFDDP   54 (55)
T ss_pred             eeEEEcccc---ccccccccccceeeccccCh--hhccCCCCCCCcccCCCC
Confidence            345555544   23347899999999999765  567789999999877654

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.59  E-value=0.04  Score=53.95  Aligned_cols=48  Identities=29%  Similarity=0.591  Sum_probs=41.3

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL  353 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~  353 (359)
                      .||..|+||...=-..   ...||+|.=|..||.+=|.+++.|=.||..+.
T Consensus       420 sEd~lCpICyA~pi~A---vf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~  467 (489)
T KOG4692|consen  420 SEDNLCPICYAGPINA---VFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI  467 (489)
T ss_pred             cccccCcceecccchh---hccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence            5778899998763333   67799999999999999999999999998776

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=93.55  E-value=0.019  Score=55.72  Aligned_cols=49  Identities=33%  Similarity=0.657  Sum_probs=39.2

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL  353 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~  353 (359)
                      .....|.+|-.=|.|...  ..-|-|-||+.||-+.|..+.+||.|...|-
T Consensus        13 n~~itC~LC~GYliDATT--I~eCLHTFCkSCivk~l~~~~~CP~C~i~ih   61 (331)
T KOG2660|consen   13 NPHITCRLCGGYLIDATT--ITECLHTFCKSCIVKYLEESKYCPTCDIVIH   61 (331)
T ss_pred             ccceehhhccceeecchh--HHHHHHHHHHHHHHHHHHHhccCCccceecc
Confidence            455789999776666632  2249999999999999999999999977554

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.36  E-value=0.033  Score=53.40  Aligned_cols=44  Identities=27%  Similarity=0.656  Sum_probs=34.2

Q ss_pred             ccccccCCCccCCCceEEcC-CCceeChhhHHHhhhc-CCCCCccc-ccc
Q 018193          306 AECCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKM-NATCPLCK-YNI  352 (359)
Q Consensus       306 ~~C~ICL~~~~~~~~lr~Lp-C~H~FH~~CId~WL~~-~~tCPlCR-~~I  352 (359)
                      ..|+.|-.-..+.   ..+| |+|.|+.+||..-|.. ...||.|. ++|
T Consensus       275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdv  321 (427)
T COG5222         275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDV  321 (427)
T ss_pred             ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCcccccc
Confidence            5699998877666   5557 8999999999988754 55899994 444

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=92.29  E-value=0.069  Score=36.78  Aligned_cols=41  Identities=27%  Similarity=0.734  Sum_probs=22.2

Q ss_pred             ccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC--CCCcc
Q 018193          308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA--TCPLC  348 (359)
Q Consensus       308 C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~--tCPlC  348 (359)
                      |.+|-+-.-.|+.-..-.|+=.+|..|++++++...  +||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            456665555553322234888999999999998766  79988

; PDB: 3NW0_A 2CT0_A.

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=92.22  E-value=0.14  Score=44.94  Aligned_cols=37  Identities=30%  Similarity=0.600  Sum_probs=23.4

Q ss_pred             CCccccccCCCccCCCceE---------EcCCC-ceeChhhHHHhhh
Q 018193          304 EDAECCICLSSYEDGTELH---------ALPCN-HHFHSTCIVKWLK  340 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr---------~LpC~-H~FH~~CId~WL~  340 (359)
                      |+..|+|||+-=-+..-+.         -.=|+ -.=|..|+|+.-+
T Consensus         1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK   47 (162)
T ss_pred             CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence            4678999998654442111         11154 4468999999864

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=92.14  E-value=0.054  Score=51.90  Aligned_cols=45  Identities=29%  Similarity=0.584  Sum_probs=38.4

Q ss_pred             ccccccCCCccCCC-ceEEcCCCceeChhhHHHhhhcCCCCCcccc
Q 018193          306 AECCICLSSYEDGT-ELHALPCNHHFHSTCIVKWLKMNATCPLCKY  350 (359)
Q Consensus       306 ~~C~ICL~~~~~~~-~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~  350 (359)
                      ..|+||.+.+-+.. .+..++|+|.-|..|...-...+-+||+|.+
T Consensus       159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence            34999998876655 4578899999999999999888899999988

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=91.62  E-value=0.12  Score=49.85  Aligned_cols=49  Identities=33%  Similarity=0.744  Sum_probs=37.7

Q ss_pred             CccccccCCCccCCCc-eEEcCCC-----ceeChhhHHHhhh--cCCCCCccccccc
Q 018193          305 DAECCICLSSYEDGTE-LHALPCN-----HHFHSTCIVKWLK--MNATCPLCKYNIL  353 (359)
Q Consensus       305 ~~~C~ICL~~~~~~~~-lr~LpC~-----H~FH~~CId~WL~--~~~tCPlCR~~I~  353 (359)
                      +..|-||.++.+.... .-+.||.     +..|..|+++|+.  .+.+|..|+....
T Consensus        78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~  134 (323)
T KOG1609|consen   78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI  134 (323)
T ss_pred             CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence            5789999998765432 4566765     7889999999998  4557999987554

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.16  E-value=0.051  Score=52.03  Aligned_cols=43  Identities=26%  Similarity=0.658  Sum_probs=31.3

Q ss_pred             CccccccCCCccCCCceEEcCCCcee-ChhhHHHhhhcCCCCCcccccccC
Q 018193          305 DAECCICLSSYEDGTELHALPCNHHF-HSTCIVKWLKMNATCPLCKYNILK  354 (359)
Q Consensus       305 ~~~C~ICL~~~~~~~~lr~LpC~H~F-H~~CId~WL~~~~tCPlCR~~I~~  354 (359)
                      +.-|.||++.-   -....|+|||.- +.+|=.    +-+.||+||+-|.+
T Consensus       300 ~~LC~ICmDaP---~DCvfLeCGHmVtCt~CGk----rm~eCPICRqyi~r  343 (350)
T KOG4275|consen  300 RRLCAICMDAP---RDCVFLECGHMVTCTKCGK----RMNECPICRQYIVR  343 (350)
T ss_pred             HHHHHHHhcCC---cceEEeecCcEEeehhhcc----ccccCchHHHHHHH
Confidence            66799999874   445899999975 344532    23489999987754

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.78  E-value=0.14  Score=45.75  Aligned_cols=32  Identities=31%  Similarity=0.869  Sum_probs=25.8

Q ss_pred             EcCCCceeChhhHHHhhhc-----------CCCCCcccccccC
Q 018193          323 ALPCNHHFHSTCIVKWLKM-----------NATCPLCKYNILK  354 (359)
Q Consensus       323 ~LpC~H~FH~~CId~WL~~-----------~~tCPlCR~~I~~  354 (359)
                      ...||.-||.-|+..||+.           -..||.|-.+|.-
T Consensus       187 N~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial  229 (234)
T KOG3268|consen  187 NIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL  229 (234)
T ss_pred             ccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence            4469999999999999963           2369999988853

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=90.40  E-value=0.2  Score=49.16  Aligned_cols=49  Identities=33%  Similarity=0.653  Sum_probs=37.0

Q ss_pred             ccCCCCccccccCCCccCCCceEEcCCCceeChhhHHH--hhhcCCCCCccccc
Q 018193          300 ILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVK--WLKMNATCPLCKYN  351 (359)
Q Consensus       300 ~~~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~--WL~~~~tCPlCR~~  351 (359)
                      ...++...|.||-....   ..-.+||+|..+--|--+  -|.....||+||..
T Consensus        56 dtDEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE  106 (493)
T COG5236          56 DTDEENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYMQKGCPLCRTE  106 (493)
T ss_pred             ccccccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence            33455667999987753   347899999999999654  35668899999974

>PF04641 Rtf2: Rtf2 RING-finger

Probab=89.02  E-value=0.47  Score=45.20  Aligned_cols=51  Identities=18%  Similarity=0.426  Sum_probs=40.6

Q ss_pred             CCCccccccCCCccCCCceEEc-CCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193          303 PEDAECCICLSSYEDGTELHAL-PCNHHFHSTCIVKWLKMNATCPLCKYNILK  354 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~L-pC~H~FH~~CId~WL~~~~tCPlCR~~I~~  354 (359)
                      .....|+|...+|........| ||||+|-..+|++- +....||+|-.++..
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~  162 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTE  162 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCcccc
Confidence            4456899999999766665555 79999999999997 345689999887664

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.54  E-value=0.16  Score=55.02  Aligned_cols=42  Identities=21%  Similarity=0.695  Sum_probs=32.4

Q ss_pred             ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccc
Q 018193          306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI  352 (359)
Q Consensus       306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I  352 (359)
                      ..|..|--..+-+  ..-.-|+|.||..|+.   .....||-|+.+.
T Consensus       841 skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~  882 (933)
T KOG2114|consen  841 SKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPEL  882 (933)
T ss_pred             eeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchhh
Confidence            4799998876554  2344599999999999   5566899998744

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.49  E-value=0.19  Score=35.26  Aligned_cols=33  Identities=21%  Similarity=0.597  Sum_probs=23.5

Q ss_pred             EcCCC-ceeChhhHHHhhhcCCCCCcccccccCC
Q 018193          323 ALPCN-HHFHSTCIVKWLKMNATCPLCKYNILKG  355 (359)
Q Consensus       323 ~LpC~-H~FH~~CId~WL~~~~tCPlCR~~I~~~  355 (359)
                      ...|+ |..+..|+..-|.++..||+|+.+++..
T Consensus        15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk   48 (50)
T PF03854_consen   15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK   48 (50)
T ss_dssp             EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred             eeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence            33586 9999999999999999999999998764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.43  E-value=0.19  Score=54.62  Aligned_cols=38  Identities=24%  Similarity=0.621  Sum_probs=29.9

Q ss_pred             cCCCCccccccCCCccCCCceEEcCCCceeChhhHHHhh
Q 018193          301 LLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWL  339 (359)
Q Consensus       301 ~~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL  339 (359)
                      ..+.++.|.+|...+... .-..-||||.||.+||.+=.
T Consensus       813 v~ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  813 VLEPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV  850 (911)
T ss_pred             EecCccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence            335567899998887654 55777999999999998765

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=88.35  E-value=0.18  Score=54.28  Aligned_cols=45  Identities=31%  Similarity=0.703  Sum_probs=36.1

Q ss_pred             ccccccCCCccCCCceEEcCCCceeChhhHHHhhhc--CCCCCcccccccC
Q 018193          306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM--NATCPLCKYNILK  354 (359)
Q Consensus       306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~--~~tCPlCR~~I~~  354 (359)
                      ..|.||++    .+.....+|+|.|+.+|+.+-+..  .+.||+||..+..
T Consensus       455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~  501 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE  501 (674)
T ss_pred             cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence            78999999    445577889999999999888754  3469999986643

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.84  E-value=0.23  Score=52.26  Aligned_cols=50  Identities=30%  Similarity=0.797  Sum_probs=41.4

Q ss_pred             ccCCCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCCC
Q 018193          300 ILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN  356 (359)
Q Consensus       300 ~~~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  356 (359)
                      ...+...+|.||+.+.    ..+..+|.   |..|+.+|+..+..||+|+..+..++
T Consensus       474 ~l~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~  523 (543)
T KOG0802|consen  474 QLREPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDD  523 (543)
T ss_pred             hhhcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhccc
Confidence            4445567899999998    45788899   99999999999999999988766544

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.26  E-value=0.22  Score=47.04  Aligned_cols=49  Identities=27%  Similarity=0.786  Sum_probs=34.9

Q ss_pred             CCccccccCCCccCCCce-EEcCC-----CceeChhhHHHhhhcCC--------CCCcccccc
Q 018193          304 EDAECCICLSSYEDGTEL-HALPC-----NHHFHSTCIVKWLKMNA--------TCPLCKYNI  352 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~l-r~LpC-----~H~FH~~CId~WL~~~~--------tCPlCR~~I  352 (359)
                      .+..|=||+..=+|+..- -.=||     +|..|..|+..|+..++        +||-|+.+-
T Consensus        19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY   81 (293)
T KOG3053|consen   19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY   81 (293)
T ss_pred             cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence            345688999986665322 12365     39999999999995432        699998753

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=85.87  E-value=0.49  Score=46.11  Aligned_cols=45  Identities=24%  Similarity=0.632  Sum_probs=35.6

Q ss_pred             CCCccccccCCCccCCCceEEcCC--CceeChhhHHHhhhcCCCCCcccccccC
Q 018193          303 PEDAECCICLSSYEDGTELHALPC--NHHFHSTCIVKWLKMNATCPLCKYNILK  354 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC--~H~FH~~CId~WL~~~~tCPlCR~~I~~  354 (359)
                      .+-.+|+||.+.+..+    ...|  ||.-+..|=.   +.+..||.||.++.+
T Consensus        46 ~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~   92 (299)
T KOG3002|consen   46 LDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRT---KVSNKCPTCRLPIGN   92 (299)
T ss_pred             hhhccCchhhccCccc----ceecCCCcEehhhhhh---hhcccCCcccccccc
Confidence            3457899999998875    5567  5888888854   568899999998874

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=85.73  E-value=0.27  Score=47.63  Aligned_cols=44  Identities=25%  Similarity=0.544  Sum_probs=29.8

Q ss_pred             ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193          306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL  353 (359)
Q Consensus       306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~  353 (359)
                      -.|--|=-.+  .-.-|..||.|+||.+|-..  ...+.||+|-..|.
T Consensus        91 HfCd~Cd~PI--~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vq  134 (389)
T KOG2932|consen   91 HFCDRCDFPI--AIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQ  134 (389)
T ss_pred             EeecccCCcc--eeeecccccchhhhhhhhhc--CccccCcCcccHHH
Confidence            3455563333  23347889999999999654  34568999976654

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=84.48  E-value=0.23  Score=56.07  Aligned_cols=46  Identities=28%  Similarity=0.596  Sum_probs=38.2

Q ss_pred             CccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccc
Q 018193          305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI  352 (359)
Q Consensus       305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I  352 (359)
                      ...|.||++......  ...-|+|.+++.|...|+..+..||.|+...
T Consensus      1153 ~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred             ccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence            358999999887332  3456999999999999999999999998643

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=84.28  E-value=0.61  Score=46.47  Aligned_cols=28  Identities=25%  Similarity=0.825  Sum_probs=20.8

Q ss_pred             CCceeChhhHHHhhhc-------------CCCCCccccccc
Q 018193          326 CNHHFHSTCIVKWLKM-------------NATCPLCKYNIL  353 (359)
Q Consensus       326 C~H~FH~~CId~WL~~-------------~~tCPlCR~~I~  353 (359)
                      |.-..|.+|+.+|+-.             +.+||+||+.+.
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC  351 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC  351 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence            3455678999999832             448999999764

They are purported to be transmembrane protein-precursors but their function is unknown.

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=84.14  E-value=0.62  Score=50.36  Aligned_cols=49  Identities=24%  Similarity=0.796  Sum_probs=36.3

Q ss_pred             CCCccccccCCCccCCCceEEcCCC-----ceeChhhHHHhhhcCC--CCCcccccc
Q 018193          303 PEDAECCICLSSYEDGTELHALPCN-----HHFHSTCIVKWLKMNA--TCPLCKYNI  352 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~-----H~FH~~CId~WL~~~~--tCPlCR~~I  352 (359)
                      +++..|-||..+=..++++- =||.     ...|.+|+-+|+.-++  .|-+|++++
T Consensus        10 ~d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~   65 (1175)
T COG5183          10 EDKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY   65 (1175)
T ss_pred             ccchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence            34578999998755554432 2554     6789999999998665  599999865

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.34  E-value=0.25  Score=51.95  Aligned_cols=43  Identities=33%  Similarity=0.635  Sum_probs=33.3

Q ss_pred             ccccccCCCccCCC-ceEEcCCCceeChhhHHHhhhcCCCCCccccc
Q 018193          306 AECCICLSSYEDGT-ELHALPCNHHFHSTCIVKWLKMNATCPLCKYN  351 (359)
Q Consensus       306 ~~C~ICL~~~~~~~-~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~  351 (359)
                      ..|.||+..|.... +-+-|-|||.-|..|+.+  ..|++|| |+++
T Consensus        12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~--lyn~scp-~~~D   55 (861)
T KOG3161|consen   12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQL--LYNASCP-TKRD   55 (861)
T ss_pred             hhchHHHHHHHHHhcCcccccccchHHHHHHHh--HhhccCC-CCcc
Confidence            56999998887653 335556999999999987  5678999 7664

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=83.05  E-value=0.28  Score=52.38  Aligned_cols=49  Identities=35%  Similarity=0.683  Sum_probs=39.7

Q ss_pred             CccccccCCCccCCCceEEcCCCceeChhhHHHhhhc---CCCCCcccccccCCC
Q 018193          305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM---NATCPLCKYNILKGN  356 (359)
Q Consensus       305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~---~~tCPlCR~~I~~~~  356 (359)
                      ..+|.||+..|.++   ..+.|.|.|...|+-.=|..   ...||+|+..+.+..
T Consensus        21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s   72 (684)
T KOG4362|consen   21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRS   72 (684)
T ss_pred             hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhh
Confidence            46899999999887   56779999999998876644   347999998876644

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=82.53  E-value=0.71  Score=49.61  Aligned_cols=25  Identities=28%  Similarity=0.907  Sum_probs=22.6

Q ss_pred             EcCCCceeChhhHHHhhhcCCCCCc
Q 018193          323 ALPCNHHFHSTCIVKWLKMNATCPL  347 (359)
Q Consensus       323 ~LpC~H~FH~~CId~WL~~~~tCPl  347 (359)
                      ...|+|+-|..|...|+++...||.
T Consensus      1045 Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             hccccccccHHHHHHHHhcCCcCCC
Confidence            3459999999999999999999996

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=81.83  E-value=0.8  Score=44.91  Aligned_cols=53  Identities=19%  Similarity=0.526  Sum_probs=34.9

Q ss_pred             CCCccccccCCCccCCCc-eEEcCCCceeChhhHHHhh-hcCCCCCcccccccCC
Q 018193          303 PEDAECCICLSSYEDGTE-LHALPCNHHFHSTCIVKWL-KMNATCPLCKYNILKG  355 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~-lr~LpC~H~FH~~CId~WL-~~~~tCPlCR~~I~~~  355 (359)
                      .+++-|+.|++.+.-.++ ..--|||...|.-|-..-- .-+..||-||+.-.++
T Consensus        12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de   66 (480)
T COG5175          12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE   66 (480)
T ss_pred             cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence            344559999999876554 3334588777777733322 2367999999865443

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.65  E-value=1.2  Score=41.02  Aligned_cols=40  Identities=25%  Similarity=0.603  Sum_probs=28.2

Q ss_pred             ccccCCCccCCCceEEcCCCce-eChhhHHHhhhcCCCCCcccccccC
Q 018193          308 CCICLSSYEDGTELHALPCNHH-FHSTCIVKWLKMNATCPLCKYNILK  354 (359)
Q Consensus       308 C~ICL~~~~~~~~lr~LpC~H~-FH~~CId~WL~~~~tCPlCR~~I~~  354 (359)
                      |-.|-+   .+..+-.|||.|+ ++..|=+.    -.+||+|+.....
T Consensus       161 Cr~C~~---~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s  201 (207)
T KOG1100|consen  161 CRKCGE---REATVLLLPCRHLCLCGICDES----LRICPICRSPKTS  201 (207)
T ss_pred             ceecCc---CCceEEeecccceEeccccccc----CccCCCCcChhhc
Confidence            666755   4666889999865 66678554    3459999986654

>KOG3899 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.60  E-value=0.62  Score=44.78  Aligned_cols=28  Identities=25%  Similarity=0.764  Sum_probs=21.7

Q ss_pred             CCceeChhhHHHhh-------------hcCCCCCccccccc
Q 018193          326 CNHHFHSTCIVKWL-------------KMNATCPLCKYNIL  353 (359)
Q Consensus       326 C~H~FH~~CId~WL-------------~~~~tCPlCR~~I~  353 (359)
                      |.-..|.+|+.+|+             +.+.+||+||+++.
T Consensus       325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc  365 (381)
T KOG3899|consen  325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC  365 (381)
T ss_pred             cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence            44667789999988             23668999999864

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=80.41  E-value=2.1  Score=30.99  Aligned_cols=43  Identities=26%  Similarity=0.726  Sum_probs=33.2

Q ss_pred             CccccccCCCccCCCceEEcC-CCceeChhhHHHhhhcCCCCCc--cccc
Q 018193          305 DAECCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKMNATCPL--CKYN  351 (359)
Q Consensus       305 ~~~C~ICL~~~~~~~~lr~Lp-C~H~FH~~CId~WL~~~~tCPl--CR~~  351 (359)
                      ...|.+|-+.|.+++.+.+-| |+-.+|..|-++    ...|-.  |..+
T Consensus         5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~   50 (54)
T PF14446_consen    5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG   50 (54)
T ss_pred             CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence            356999999999888888888 999999999544    555644  5443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	359
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		7e-10
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		3e-08
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		1e-07
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		2e-07
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		3e-07
2ecn_A	70	Solution Structure Of The Ring Domain Of The Human		3e-06
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		2e-05
1chc_A	68	Structure Of The C3hc4 Domain By 1h-Nuclear Magneti		8e-04

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCK 349
           E   C +C+  +E    L  LPCNH FH+ C+ KWLK N TCP+C+
Sbjct: 22  EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 67

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352
           +C ICLS  E+G ++  LPC H FH  C+ +WL  N  CP+C+ +I
Sbjct: 16  KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354
           C +CL  ++   EL   PC H FH  C++KWL++   CPLC   +L+
Sbjct: 18  CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 356
           EC +C   Y  G  +  LPCNH FH +CIV WL+ + +CP+C+ ++   N
Sbjct: 17  ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 302 LPEDAECCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKMNATCPLCKYNIL 353
           + +  EC +CL+  EDG E   LP C H FH+ C+  WL  ++TCPLC+  ++
Sbjct: 2   MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54

>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring Finger Protein 141 Length = 70

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNE 357
           L ++ ECCIC+    DG     LPC H F   CI KW   +  CP+C+  +   NE
Sbjct: 12  LTDEEECCICM----DGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCK 349
           C IC S Y  G     LPC+H+FH  C+  WL+ + TCP+C+
Sbjct: 43  CPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84

>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic Resonance Spectroscopy; A New Structural Class Of Zinc- Finger Length = 68

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 308 CCICLSSYEDGTELH-ALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352
           C ICL   ED +    ALPC H F   CI +W++ N TCPLCK  +
Sbjct: 8   CPICL---EDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	359
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	4e-26
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	5e-26
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	7e-25
2ect_A	78	Ring finger protein 126; metal binding protein, st	1e-21
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	3e-21
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	3e-21
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	3e-20
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	3e-16
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	8e-16
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	6e-14
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	2e-12
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	3e-12
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	9e-12
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	2e-11
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	6e-11
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	2e-10
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	3e-10
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	4e-10
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	5e-10
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	2e-09
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	3e-09
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	8e-09
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	1e-08
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	1e-08
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	3e-08
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	5e-05
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	6e-08
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	2e-07
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	2e-06
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	3e-06
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	5e-06
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	6e-06
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	6e-06
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	1e-05
1z6u_A	150	NP95-like ring finger protein isoform B; structura	1e-05
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	2e-05
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	2e-05
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	6e-05
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	8e-05
3nw0_A	238	Non-structural maintenance of chromosomes element	1e-04
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	1e-04
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	2e-04
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	2e-04
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	2e-04
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	3e-04
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	6e-04
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	6e-04
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	8e-04

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 98.6 bits (246), Expect = 4e-26
 Identities = 22/53 (41%), Positives = 30/53 (56%)

Query: 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG 355
            E   C +C+  +E    L  LPCNH FH+ C+ KWLK N TCP+C+ +    
Sbjct: 21  SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 98.3 bits (245), Expect = 5e-26
 Identities = 19/55 (34%), Positives = 29/55 (52%)

Query: 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQ 358
               C +CL  ++   EL   PC H FH  C++KWL++   CPLC   +L+  + 
Sbjct: 14  LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQL 68

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 95.1 bits (237), Expect = 7e-25
 Identities = 21/49 (42%), Positives = 31/49 (63%)

Query: 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352
            + +C ICLS  E+G ++  LPC H FH  C+ +WL  N  CP+C+ +I
Sbjct: 13  TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 86.7 bits (215), Expect = 1e-21
 Identities = 21/57 (36%), Positives = 32/57 (56%)

Query: 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQ 358
           +    EC +C   Y  G  +  LPCNH FH +CIV WL+ + +CP+C+ ++   N  
Sbjct: 12  VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 85.9 bits (213), Expect = 3e-21
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 295 VANERILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352
           V  +   + ++  C IC S Y  G     LPC+H+FH  C+  WL+ + TCP+C+   
Sbjct: 30  VTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 87

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 85.1 bits (211), Expect = 3e-21
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 359
           L ++ ECCIC+    DG     LPC H F   CI KW   +  CP+C+  +   NE  
Sbjct: 12  LTDEEECCICM----DGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESS 65

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 82.2 bits (204), Expect = 3e-20
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 304 EDAECCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKMNATCPLCKYNIL 353
           +  EC +CL+  EDG E   LP C H FH+ C+  WL  ++TCPLC+  ++
Sbjct: 4   DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 71.7 bits (176), Expect = 3e-16
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352
               C ICL    + +   ALPC H F   CI +W++ N TCPLCK  +
Sbjct: 4   VAERCPICLEDPSNYS--MALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 70.0 bits (172), Expect = 8e-16
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 305 DAECCICLSSYEDGTEL-HALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352
            + C ICL        + H LPC H  H TC  + LK    CPLC    
Sbjct: 5   SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 65.3 bits (159), Expect = 6e-14
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 304 EDAECCICLSSYED----GTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352
               C IC+  Y +    G  + +  C H F S C+   LK   TCP C+  I
Sbjct: 14  GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 60.9 bits (148), Expect = 2e-12
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 304 EDAECCICLSSYED----GTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 356
               C IC+  Y +    G  + +  C H F S C+   LK   TCP C+  I    
Sbjct: 2   AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 60.6 bits (147), Expect = 3e-12
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 307 ECCICLSSYED----GTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 356
            C IC+  Y +    G  + +  C H F S C+   LK   TCP C+  I    
Sbjct: 12  SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 64.9 bits (157), Expect = 9e-12
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 16/65 (24%)

Query: 304 EDAECCICLSSYEDGTEL-----HALPCNHHFHSTCIVKWLK-----------MNATCPL 347
           E+  C IC +   DG E+         C    H+ C+ +W K               CP 
Sbjct: 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF 366

Query: 348 CKYNI 352
           CK  +
Sbjct: 367 CKAKL 371

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 58.4 bits (141), Expect = 2e-11
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 303 PEDAECCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKMNATCPLC 348
                C  C +  +    +     CNH FH+ C+  W+K N  CPLC
Sbjct: 24  QVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLC 70

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 56.7 bits (137), Expect = 6e-11
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354
           L     C IC     D T +    C H F  +CIV+    +  CP C   + +
Sbjct: 12  LTPYILCSICKGYLIDATTI--TECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 55.2 bits (133), Expect = 2e-10
 Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 296 ANERILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352
           +          EC ICL +        +LPC H F   C+     +   C LC+  I
Sbjct: 6   SGNTAPSLTVPECAICLQTCVHPV---SLPCKHVFCYLCVKGASWLGKRCALCRQEI 59

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 55.2 bits (133), Expect = 3e-10
 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCK 349
               C IC  ++++        C H+F  +C ++  +    C +C 
Sbjct: 14  IPFRCFICRQAFQNPV---VTKCRHYFCESCALEHFRATPRCYICD 56

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 55.6 bits (133), Expect = 4e-10
 Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 22/81 (27%)

Query: 298 ERILLPEDAECCICL------SSYEDGTELHA---------LPCNHHFHSTCIVKWLK-- 340
           E + +  + +C IC+      S Y D T+  A           C+H FH  C++      
Sbjct: 18  EELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNG 77

Query: 341 ---MNATCPLCK--YNILKGN 356
               +  CP CK  Y    G 
Sbjct: 78  NKDGSLQCPSCKTIYGEKTGT 98

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 55.3 bits (133), Expect = 5e-10
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWL-KMNATCPLCK 349
           + E   C IC+    D        C+     +CI +WL +  A CP C+
Sbjct: 19  IAEVFRCFICMEKLRDARLC--PHCSKLCCFSCIRRWLTEQRAQCPHCR 65

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 53.7 bits (129), Expect = 2e-09
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 356
           L     C +C   + D T +  + C H F  TCIV++L+ +  CP+C   + K  
Sbjct: 12  LNPHLMCVLCGGYFIDATTI--IECLHSFCKTCIVRYLETSKYCPICDVQVHKTR 64

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 54.3 bits (130), Expect = 3e-09
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 294 YVANERILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCK 349
            +++   +L  + +C IC   + +      L C H F S CI +W+K    CP+C+
Sbjct: 53  VLSHMNDVLENELQCIICSEYFIEAV---TLNCAHSFCSYCINEWMKRKIECPICR 105

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 52.2 bits (124), Expect = 8e-09
 Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 15/60 (25%)

Query: 304 EDAECCICLSSY---------------EDGTELHALPCNHHFHSTCIVKWLKMNATCPLC 348
               C IC +                  +   +    CNH FH  CI +WLK    CPL 
Sbjct: 47  VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 106

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 51.4 bits (122), Expect = 1e-08
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 308 CCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKMNATCPLC 348
           C    +S        A   CNH FH  CI +WLK    CPL 
Sbjct: 54  CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 95

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 50.3 bits (120), Expect = 1e-08
 Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 5/54 (9%)

Query: 299 RILLPEDA-ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM--NATCPLCK 349
           R   P+    C IC S    G       C    H  C+ K+ +      CP C 
Sbjct: 8   RETYPDAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCN 59

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 50.9 bits (121), Expect = 3e-08
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 304 EDAECCICLSSYEDGTELH----ALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352
               C IC+  Y +  +      +  C H F S C+   LK   TCP C+  I
Sbjct: 6   GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 41.7 bits (97), Expect = 5e-05
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 303 PEDAECCICLSSYEDGTE----LHALPCNHHFHSTCIVKWLKMNATCPLCK 349
                C IC+  Y +  +    + +  C H F S C+   LK   TCP C+
Sbjct: 70  SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 120

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 49.0 bits (117), Expect = 6e-08
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 356
           + +   C IC   +     +    C+H++ S CI K+L     CP C   + + +
Sbjct: 19  IDDLLRCGICFEYFNIAMII--PQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 51.3 bits (122), Expect = 2e-07
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWL-KMNATCPLCKYNILK 354
               C IC  + +D       PC H   ++C+  W       CP C+  I  
Sbjct: 331 TFQLCKICAENDKDVK---IEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK-MNATCPLCKYNILK 354
           + +  +C  C              C H F  +C+   L   +  C  C+ +I+K
Sbjct: 12  VEDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 288 IETNGGYVANERILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK-MNATCP 346
           +E   GY       L    EC ICL +  +  +    PC H F   CI+K ++     CP
Sbjct: 1   MEEIQGYDVEFDPPLESKYECPICLMALREAVQT---PCGHRFCKACIIKSIRDAGHKCP 57

Query: 347 LCKYNILKGN 356
           +    +L+  
Sbjct: 58  VDNEILLENQ 67

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 43.4 bits (102), Expect = 5e-06
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 9/56 (16%)

Query: 303 PEDAECC-ICLSSYEDGTELHALPCN-----HHFHSTCIVKWL--KMNATCPLCKY 350
           P   + C IC    +D + L   PC+     H  H  C+ +W+       C LCKY
Sbjct: 12  PSSQDICRICHCEGDDESPLIT-PCHCTGSLHFVHQACLQQWIKSSDTRCCELCKY 66

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 44.1 bits (104), Expect = 6e-06
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 295 VANERILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWL-KMNATCPLCK 349
           +  + I    + +C IC+    +      LPCNH     C    + K +  CP C+
Sbjct: 5   LPKDAIPSLSECQCGICMEILVEPV---TLPCNHTLCKPCFQSTVEKASLCCPFCR 57

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 43.8 bits (103), Expect = 6e-06
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK-MNATCPLCKYNILKGN 356
             +   C IC     D  E     C H F   CI++ LK M + CP C+Y     +
Sbjct: 20  FVKSISCQICEHILADPVETS---CKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 4/49 (8%)

Query: 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA-TCPLCK 349
           + E  +C  C              C H+    C+ +  +    +CP C+
Sbjct: 49  VEETFQCICCQELVFRPI---TTVCQHNVCKDCLDRSFRAQVFSCPACR 94

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA-TCPLCKYNI 352
           L +   C  C              C H+    C+ +  K    +CP C++++
Sbjct: 75  LEQSFMCVCCQELVYQPVTT---ECFHNVCKDCLQRSFKAQVFSCPACRHDL 123

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 287 PIETNGGYVANERILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK-MNATC 345
              T+G  +      L  +  C ICL   ++        C H F + CI+  L+  N  C
Sbjct: 36  EAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTT--KECLHRFCADCIITALRSGNKEC 93

Query: 346 PLCKYNILK 354
           P C+  ++ 
Sbjct: 94  PTCRKKLVS 102

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 288 IETNGGYVANERILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK-MNATCP 346
           +E   GY       L    EC ICL +  +       PC H F   CI+K ++     CP
Sbjct: 1   MEEIQGYDVEFDPPLESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCP 57

Query: 347 LCKYNI 352
           +    +
Sbjct: 58  VDNEIL 63

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 41.0 bits (96), Expect = 6e-05
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCK 349
           L +   C  C +   +   L    C H F S C+   +     CP+C 
Sbjct: 19  LEKLLRCSRCTNILREPVCL--GGCEHIFCSNCVSDCIGTG--CPVCY 62

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 40.1 bits (94), Expect = 8e-05
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 295 VANERILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN--ATCPLCK 349
           + +E   +P++  C IC     D   +    C + +   CI   L  +   TCP C 
Sbjct: 3   LGSEDDPIPDELLCLICKDIMTDAVVIPC--CGNSYCDECIRTALLESDEHTCPTCH 57

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 4/45 (8%)

Query: 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM--NATCPLCK 349
            C IC S    G       C    H  C+ K+ +      CP C 
Sbjct: 182 ICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCN 224

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 4/50 (8%)

Query: 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK-MNATCPLCKY 350
           L     C  C +      +     C H + S C+   L      C  C +
Sbjct: 28  LEAKYLCSACRNVLRRPFQA---QCGHRYCSFCLASILSSGPQNCAACVH 74

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWL---KMNATCPLCKYNILKGN 356
           + +  EC ICL       E  +  C+H F   C++K L   K  + CPLCK +I K +
Sbjct: 18  MQKILECPICLELI---KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 296 ANERILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWL--KMNATCPLCK 349
           + E   +P++  C IC     D   +    C + +   CI   L      TCP C 
Sbjct: 6   SGEDDPIPDELLCLICKDIMTDAVVIP--CCGNSYCDECIRTALLESDEHTCPTCH 59

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN---ATCPLCKYNILKGN 356
           L E+  C ICL       +   + C H+F   CI +  + +     CPLCK ++ K  
Sbjct: 17  LQEEVICPICLDIL---QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Length = 60

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 11/56 (19%)

Query: 303 PEDAECC-ICLSSYEDGTELHALPCN-----HHFHSTCIVKWLKM--NATCPLCKY 350
            ED   C IC    E G E     C       + H +C+  WL +  N  C +C  
Sbjct: 3   DEDVPVCWICNE--ELGNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGV 55

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 36.9 bits (85), Expect = 6e-04
 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 3/56 (5%)

Query: 304 EDAECCICLSSYEDGTELHAL--PCNHHFHSTCIVKWLKMN-ATCPLCKYNILKGN 356
           +D  C  C ++      L  +   C H    +C+          CP C   + K N
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 307 ECCICLSSYEDGTELHALPCNHHFH-STCIVKWLKMNATCPLCKYNI 352
            C +C     DG  +H     H      C  +  K  A+CP+CK  I
Sbjct: 9   PCSLCEKRPRDGNIIH-GRTGHLVTCFHCARRLKKAGASCPICKKEI 54

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 302 LPEDAECCICLSSYEDGTEL-HALPCNHHFHSTCIVKWLKMNA---TCPLCK 349
           L E  EC IC+ S+ +       L C H     C+ K L  +     CP C 
Sbjct: 12  LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCS 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	359
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.71
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.69
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.61
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.58
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.58
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.57
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.52
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.5
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.47
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.45
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.45
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.45
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.43
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.43
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.41
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.38
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.37
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.37
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.33
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.33
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.32
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.3
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.3
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.28
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.27
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.23
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.23
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.23
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.22
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.2
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.19
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.18
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.18
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.17
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.16
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.16
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.16
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.16
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.11
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.08
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.07
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.06
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.05
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.01
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.99
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.97
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.95
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.94
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.9
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.88
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.86
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.86
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.86
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.86
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.85
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.84
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.82
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.8
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.78
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.75
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.63
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.61
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.58
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.54
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.51
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.45
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.39
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.32
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.31
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.06
3nw0_A	238	Non-structural maintenance of chromosomes element	97.85
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.69
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	94.43
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	94.12
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	93.97
1we9_A	64	PHD finger family protein; structural genomics, PH	91.83
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	89.31
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	89.26
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	88.8
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	88.76
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	87.81
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	86.37
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	85.66
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	83.9
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	83.79
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	83.72
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	83.1
2lv9_A	98	Histone-lysine N-methyltransferase MLL5; zinc fing	82.07
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	80.69
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	80.54
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	80.26

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.71  E-value=8.1e-18  Score=133.57  Aligned_cols=78  Identities=29%  Similarity=0.680  Sum_probs=66.2

Q ss_pred             hcCCCCCHHHhhcCCCceeeeccCcccccCCCCcccccccCCCccccccccCCCCccccccCCCccCCCceEEcCCCcee
Q 018193          251 AGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDAECCICLSSYEDGTELHALPCNHHF  330 (359)
Q Consensus       251 ~~~~g~s~~~i~~Lp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~C~ICL~~~~~~~~lr~LpC~H~F  330 (359)
                      ....|++++.++.||.+.+......                          ..++.+|+||+++|.+++.++.|||+|.|
T Consensus        12 ~~~~~~s~~~i~~lp~~~~~~~~~~--------------------------~~~~~~C~IC~~~~~~~~~~~~l~C~H~F   65 (91)
T 2l0b_A           12 VANPPASKESIDALPEILVTEDHGA--------------------------VGQEMCCPICCSEYVKGDVATELPCHHYF   65 (91)
T ss_dssp             SCCCCCCHHHHHTSCEEECCTTCSS--------------------------SSSCSEETTTTEECCTTCEEEEETTTEEE
T ss_pred             cCCCCCCHHHHHhCCCeeecccccc--------------------------cCCCCCCcccChhhcCCCcEEecCCCChH
Confidence            3467899999999998776643211                          13457899999999999999999999999


Q ss_pred             ChhhHHHhhhcCCCCCcccccccC
Q 018193          331 HSTCIVKWLKMNATCPLCKYNILK  354 (359)
Q Consensus       331 H~~CId~WL~~~~tCPlCR~~I~~  354 (359)
                      |..||++|++.+.+||+||+.+..
T Consensus        66 h~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           66 HKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             EHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             HHHHHHHHHHcCCcCcCcCccCCC
Confidence            999999999999999999998864

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=8.1e-18  Score=128.44  Aligned_cols=53  Identities=42%  Similarity=1.010  Sum_probs=48.9

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG  355 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  355 (359)
                      .++.+|+||+++|.+++.++.+||+|.||..||++|++.+.+||+||+++.+.
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS   73 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence            34578999999999999999999999999999999999999999999998764

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.61  E-value=5e-16  Score=111.09  Aligned_cols=51  Identities=43%  Similarity=1.102  Sum_probs=47.1

Q ss_pred             CCCccccccCCCccCCCceEEcC-CCceeChhhHHHhhhcCCCCCccccccc
Q 018193          303 PEDAECCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKMNATCPLCKYNIL  353 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~Lp-C~H~FH~~CId~WL~~~~tCPlCR~~I~  353 (359)
                      +++.+|+||+++|++++.+..+| |+|.||..||++|++.+.+||+||+++.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            35678999999999999999998 9999999999999999999999999874

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.58  E-value=2e-15  Score=113.05  Aligned_cols=54  Identities=39%  Similarity=0.962  Sum_probs=49.1

Q ss_pred             CCCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193          302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG  355 (359)
Q Consensus       302 ~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  355 (359)
                      ..++.+|+||++.|..++.++.+||+|.||..||.+|++.+.+||+||+.+...
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   64 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ   64 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred             CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence            345678999999999989999999999999999999999999999999988653

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=1.9e-15  Score=114.69  Aligned_cols=54  Identities=35%  Similarity=0.934  Sum_probs=49.4

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCCC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN  356 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  356 (359)
                      .++.+|+||++.|.+++.++.|||+|.||..||++|++.+.+||+||+++.+-.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~   66 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA   66 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred             CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence            456789999999999999999999999999999999999999999999987643

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.57  E-value=2.1e-15  Score=115.56  Aligned_cols=54  Identities=39%  Similarity=0.972  Sum_probs=49.6

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCCC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN  356 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  356 (359)
                      .++.+|+||++.|.+++.++.+||+|.||..||.+|++.+.+||+||+.+...+
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   66 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN   66 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred             CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence            456789999999999999999999999999999999999999999999987654

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=6e-15  Score=114.53  Aligned_cols=51  Identities=35%  Similarity=0.795  Sum_probs=42.9

Q ss_pred             CCccccccCCCccC-----------CCceEEcC-CCceeChhhHHHhhhcCCCCCcccccccC
Q 018193          304 EDAECCICLSSYED-----------GTELHALP-CNHHFHSTCIVKWLKMNATCPLCKYNILK  354 (359)
Q Consensus       304 ~~~~C~ICL~~~~~-----------~~~lr~Lp-C~H~FH~~CId~WL~~~~tCPlCR~~I~~  354 (359)
                      ++.+|+||+++|++           ++.++.++ |+|.||.+||++||+.+.+||+||+++..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence            45678888888864           45566776 99999999999999999999999998754

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.50  E-value=1.5e-14  Score=103.18  Aligned_cols=50  Identities=36%  Similarity=0.719  Sum_probs=44.2

Q ss_pred             CCccccccCCCccCC-CceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193          304 EDAECCICLSSYEDG-TELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL  353 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~-~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~  353 (359)
                      ++.+|+||+++|.++ +.+..+||+|.||..||++|++.+.+||+||+++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            457899999999664 45788999999999999999999999999999874

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.47  E-value=1.6e-14  Score=108.37  Aligned_cols=54  Identities=30%  Similarity=0.633  Sum_probs=47.5

Q ss_pred             CCCccccccCCCccCC----CceEEcCCCceeChhhHHHhhhcCCCCCcccccccCCC
Q 018193          303 PEDAECCICLSSYEDG----TELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN  356 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~----~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  356 (359)
                      .++.+|+||++.|.+.    +....++|||.||..||++|++.+.+||+||+++...+
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR   65 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence            4567899999999763    56688999999999999999999999999999987654

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=4.9e-14  Score=104.83  Aligned_cols=53  Identities=30%  Similarity=0.636  Sum_probs=46.0

Q ss_pred             CCCCccccccCCCccCC----CceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193          302 LPEDAECCICLSSYEDG----TELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK  354 (359)
Q Consensus       302 ~~~~~~C~ICL~~~~~~----~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~  354 (359)
                      ..++.+|+||++.|.+.    +.+..++|+|.||..||++|++.+.+||+||.++.+
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            35667899999999864    455789999999999999999999999999998864

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.45  E-value=5.4e-14  Score=115.40  Aligned_cols=51  Identities=24%  Similarity=0.562  Sum_probs=42.8

Q ss_pred             CCccccccCCCccCCC---------------ceEEcCCCceeChhhHHHhh-----hcCCCCCcccccccC
Q 018193          304 EDAECCICLSSYEDGT---------------ELHALPCNHHFHSTCIVKWL-----KMNATCPLCKYNILK  354 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~---------------~lr~LpC~H~FH~~CId~WL-----~~~~tCPlCR~~I~~  354 (359)
                      .+.+|+||+++|.++.               .++.++|+|.||..||++|+     +.+.+||+||+.+..
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            4568999999997653               45588999999999999999     457799999998754

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.45  E-value=4.5e-14  Score=115.36  Aligned_cols=50  Identities=34%  Similarity=0.626  Sum_probs=43.7

Q ss_pred             CCCccccccCCCccCC---------------CceEEcCCCceeChhhHHHhhhcCCCCCcccccc
Q 018193          303 PEDAECCICLSSYEDG---------------TELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI  352 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~---------------~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I  352 (359)
                      .++..|+||++.|++.               ..++.++|+|.||..||++||+.+.+||+||+++
T Consensus        35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~   99 (106)
T 3dpl_R           35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW   99 (106)
T ss_dssp             SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred             CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence            3567899999999865               1367889999999999999999999999999985

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.43  E-value=3.6e-14  Score=104.05  Aligned_cols=53  Identities=30%  Similarity=0.629  Sum_probs=46.3

Q ss_pred             CCccccccCCCccCC----CceEEcCCCceeChhhHHHhhhcCCCCCcccccccCCC
Q 018193          304 EDAECCICLSSYEDG----TELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN  356 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~----~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  356 (359)
                      ++.+|+||++.|.++    +.+..++|||.||.+||++|++.+.+||+||.++...+
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   58 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR   58 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence            457899999999764    55688899999999999999999999999999987653

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=8.9e-14  Score=107.90  Aligned_cols=53  Identities=32%  Similarity=0.825  Sum_probs=45.2

Q ss_pred             CCCCccccccCCCccCCCceEEcCCC-----ceeChhhHHHhhhcCC--CCCcccccccCC
Q 018193          302 LPEDAECCICLSSYEDGTELHALPCN-----HHFHSTCIVKWLKMNA--TCPLCKYNILKG  355 (359)
Q Consensus       302 ~~~~~~C~ICL~~~~~~~~lr~LpC~-----H~FH~~CId~WL~~~~--tCPlCR~~I~~~  355 (359)
                      ..++.+|.||+++|++++.+ .+||+     |.||.+||++||+.+.  +||+||+++.-.
T Consensus        12 ~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~   71 (80)
T 2d8s_A           12 PSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME   71 (80)
T ss_dssp             CTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred             CCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence            34567899999999988776 58997     9999999999998764  899999988643

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=9.4e-14  Score=104.11  Aligned_cols=51  Identities=39%  Similarity=1.036  Sum_probs=45.6

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCCCC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNE  357 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~  357 (359)
                      .++.+|+||++.+.+    ..+||+|.||..||++|++.+.+||+||+++...+.
T Consensus        13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   63 (70)
T 2ecn_A           13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE   63 (70)
T ss_dssp             CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred             CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence            456789999999877    788999999999999999999999999999886554

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.38  E-value=2.3e-13  Score=101.34  Aligned_cols=50  Identities=40%  Similarity=0.866  Sum_probs=43.7

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK  354 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~  354 (359)
                      .++.+|+||++.+.++  ...+||+|.||..||++|++.+.+||+||+++..
T Consensus         3 ~~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            3 TVAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            3457899999998753  4789999999999999999999999999998754

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=4.6e-13  Score=101.11  Aligned_cols=51  Identities=25%  Similarity=0.608  Sum_probs=44.4

Q ss_pred             CCCccccccCCCccCCCceEEc-CCCceeChhhHHHhhhcCCCCCcccccccCCC
Q 018193          303 PEDAECCICLSSYEDGTELHAL-PCNHHFHSTCIVKWLKMNATCPLCKYNILKGN  356 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~L-pC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  356 (359)
                      .++..|+||++.+.+.   ..+ +|+|.||..||++|++.+.+||+||..+...+
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~   64 (72)
T 2djb_A           13 TPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ   64 (72)
T ss_dssp             CGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred             CCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence            4567899999999875   454 99999999999999999999999999987654

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=2.7e-13  Score=102.08  Aligned_cols=49  Identities=31%  Similarity=0.647  Sum_probs=43.8

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK  354 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~  354 (359)
                      .++.+|+||++.+.+.   ..+||+|.||..||++|++.+.+||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence            4567899999999775   778999999999999999999999999998864

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=9.8e-13  Score=102.48  Aligned_cols=54  Identities=30%  Similarity=0.594  Sum_probs=46.6

Q ss_pred             CCCCccccccCCCccCCCc-eEEcCCCceeChhhHHHhhhcC---CCCCcccccccCC
Q 018193          302 LPEDAECCICLSSYEDGTE-LHALPCNHHFHSTCIVKWLKMN---ATCPLCKYNILKG  355 (359)
Q Consensus       302 ~~~~~~C~ICL~~~~~~~~-lr~LpC~H~FH~~CId~WL~~~---~tCPlCR~~I~~~  355 (359)
                      ..++.+|+||++.|.+++. .+.++|||.||..||++|++.+   .+||+||..+...
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            3556789999999998765 6888999999999999999886   7999999987654

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.33  E-value=1.4e-12  Score=99.15  Aligned_cols=52  Identities=29%  Similarity=0.672  Sum_probs=44.7

Q ss_pred             CCCccccccCCCccCCCceEEcC-CCceeChhhHHHhhhcC--CCCCcccccccCCCC
Q 018193          303 PEDAECCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKMN--ATCPLCKYNILKGNE  357 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~Lp-C~H~FH~~CId~WL~~~--~tCPlCR~~I~~~~~  357 (359)
                      .++..|+||++.|.++   ..+| |+|.||..||++|++.+  .+||+||+++...+.
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~   67 (74)
T 2yur_A           13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA   67 (74)
T ss_dssp             CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred             CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence            4567899999999876   6799 99999999999999876  689999998766543

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.32  E-value=1.6e-13  Score=113.97  Aligned_cols=50  Identities=34%  Similarity=0.629  Sum_probs=1.5

Q ss_pred             CCCccccccCCCccCC-------------C--ceEEcCCCceeChhhHHHhhhcCCCCCcccccc
Q 018193          303 PEDAECCICLSSYEDG-------------T--ELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI  352 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~-------------~--~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I  352 (359)
                      .+++.|+||+++|++.             +  .+..++|+|.||..||++||+.+.+||+||+++
T Consensus        46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~  110 (117)
T 4a0k_B           46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW  110 (117)
T ss_dssp             CCC--------------------------------------------------------------
T ss_pred             CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence            3567899999999762             2  233458999999999999999999999999985

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=1.5e-12  Score=100.36  Aligned_cols=48  Identities=19%  Similarity=0.551  Sum_probs=43.0

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL  353 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~  353 (359)
                      .++..|+||++.|.+.   ..+||+|.||..||.+|++.+.+||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           13 EIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            4567899999999775   56899999999999999999999999999875

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=2.5e-12  Score=96.87  Aligned_cols=51  Identities=31%  Similarity=0.643  Sum_probs=43.8

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhh---cCCCCCcccccccCCC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK---MNATCPLCKYNILKGN  356 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~---~~~tCPlCR~~I~~~~  356 (359)
                      .++..|+||++.|.+.   ..+||+|.||..||.+|++   .+.+||+||.++..++
T Consensus        18 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   71 (73)
T 2ysl_A           18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA   71 (73)
T ss_dssp             CCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred             ccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence            5567899999999865   6779999999999999997   4568999999987654

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=2e-12  Score=95.79  Aligned_cols=51  Identities=22%  Similarity=0.546  Sum_probs=43.5

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhh-hcCCCCCcccccccCCC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWL-KMNATCPLCKYNILKGN  356 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL-~~~~tCPlCR~~I~~~~  356 (359)
                      .++..|+||++.+.++   ..++|||.||..||.+|+ +.+.+||+||.++..++
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   64 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK   64 (66)
T ss_dssp             CCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred             CcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence            4567899999999877   347999999999999999 45679999999987653

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=3.1e-12  Score=97.64  Aligned_cols=55  Identities=24%  Similarity=0.495  Sum_probs=45.5

Q ss_pred             CCCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcC--CCCCcccccccCCCCC
Q 018193          302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN--ATCPLCKYNILKGNEQ  358 (359)
Q Consensus       302 ~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~--~tCPlCR~~I~~~~~~  358 (359)
                      .+...+|+||.+.+..++...  .|+|.||..||++||+.+  .+||+||++...+..+
T Consensus        12 ~~~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~   68 (74)
T 2ct0_A           12 PDAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK   68 (74)
T ss_dssp             SSSSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCC
T ss_pred             cCCCCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCC
Confidence            345578999999998775433  799999999999999987  7999999988765544

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.23  E-value=2e-12  Score=109.93  Aligned_cols=48  Identities=33%  Similarity=0.886  Sum_probs=42.9

Q ss_pred             CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193          304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK  354 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~  354 (359)
                      ++..|+||++.|.++   ..+||||.||..||.+|++.+.+||+||.++..
T Consensus        52 ~~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           52 NELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKS   99 (138)
T ss_dssp             HHSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred             ccCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence            345799999999875   678999999999999999999999999998854

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=7.6e-12  Score=96.42  Aligned_cols=50  Identities=28%  Similarity=0.686  Sum_probs=43.9

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc------CCCCCcccccccCC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM------NATCPLCKYNILKG  355 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~------~~tCPlCR~~I~~~  355 (359)
                      .++.+|+||++.|.+.   ..+||+|.||..||.+|++.      +.+||+||..+...
T Consensus        17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecv_A           17 KEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE   72 (85)
T ss_dssp             CCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred             cCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence            4567899999999876   56799999999999999987      77999999988754

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.23  E-value=1e-11  Score=95.73  Aligned_cols=50  Identities=30%  Similarity=0.688  Sum_probs=44.0

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc------CCCCCcccccccCC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM------NATCPLCKYNILKG  355 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~------~~tCPlCR~~I~~~  355 (359)
                      .++..|+||++.|.++   ..+||+|.||..||.+|++.      +.+||+||..+..+
T Consensus        17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecw_A           17 KEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG   72 (85)
T ss_dssp             CTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred             ccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence            4567899999999887   57899999999999999987      67899999988654

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.22  E-value=3.6e-12  Score=106.21  Aligned_cols=53  Identities=30%  Similarity=0.643  Sum_probs=46.5

Q ss_pred             CCCccccccCCCccCC----CceEEcCCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193          303 PEDAECCICLSSYEDG----TELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG  355 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~----~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  355 (359)
                      .++.+|+||++.|.++    +....++|||.||.+||++|++.+.+||+||+.+...
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   61 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK   61 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence            4567899999999764    5668899999999999999999999999999988654

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.20  E-value=9.3e-12  Score=95.08  Aligned_cols=50  Identities=28%  Similarity=0.558  Sum_probs=43.9

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc-CCCCCcccccccCC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM-NATCPLCKYNILKG  355 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~  355 (359)
                      .++..|+||++.|.++   ..++|||.||..||.+|++. +.+||+||.++...
T Consensus         6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             cccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence            4567899999999876   66799999999999999987 78999999988654

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=2.3e-11  Score=89.12  Aligned_cols=44  Identities=34%  Similarity=0.727  Sum_probs=38.3

Q ss_pred             CCCCccccccCCCccCCCceEEcCCCceeChhhHHHhhh---cCCCCCcc
Q 018193          302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK---MNATCPLC  348 (359)
Q Consensus       302 ~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~---~~~tCPlC  348 (359)
                      ..++..|+||++.|.+.   ..+||||.||..||.+|++   .+.+||+|
T Consensus        17 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             CccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            35667899999999876   6789999999999999998   45689998

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.18  E-value=4.3e-12  Score=102.10  Aligned_cols=50  Identities=28%  Similarity=0.665  Sum_probs=43.1

Q ss_pred             CCCccccccCCCccCCCceEE-cCCCceeChhhHHHhhhcC-CCCCcccccccCC
Q 018193          303 PEDAECCICLSSYEDGTELHA-LPCNHHFHSTCIVKWLKMN-ATCPLCKYNILKG  355 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~-LpC~H~FH~~CId~WL~~~-~tCPlCR~~I~~~  355 (359)
                      .++..|+||++.|.++   .. ++|||.||..||.+|++.+ .+||+||.++...
T Consensus        20 ~~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~   71 (100)
T 3lrq_A           20 AEVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR   71 (100)
T ss_dssp             HHHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             CCCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence            4557899999999864   55 8999999999999999988 6999999988653

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.18  E-value=4e-12  Score=97.10  Aligned_cols=50  Identities=28%  Similarity=0.608  Sum_probs=43.2

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc-------CCCCCcccccccCC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM-------NATCPLCKYNILKG  355 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~-------~~tCPlCR~~I~~~  355 (359)
                      .++..|+||++.|.+.   ..+||||.||..||.+|++.       +.+||+||..+...
T Consensus        10 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~   66 (79)
T 2egp_A           10 QEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE   66 (79)
T ss_dssp             CCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred             ccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence            4567899999999876   45899999999999999987       66899999988653

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.17  E-value=1.8e-11  Score=96.35  Aligned_cols=50  Identities=30%  Similarity=0.697  Sum_probs=43.1

Q ss_pred             cCCCCccccccCCCccCCCceEEcC-CCceeChhhHHHhhhcC--CCCCccccccc
Q 018193          301 LLPEDAECCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKMN--ATCPLCKYNIL  353 (359)
Q Consensus       301 ~~~~~~~C~ICL~~~~~~~~lr~Lp-C~H~FH~~CId~WL~~~--~tCPlCR~~I~  353 (359)
                      ...++..|+||++.|.++   ..+| |||.||..||.+|+..+  .+||+||..+.
T Consensus         9 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A            9 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CCCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             cCCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            345678999999999877   6889 99999999999999754  58999999874

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=1.6e-11  Score=88.14  Aligned_cols=43  Identities=30%  Similarity=0.950  Sum_probs=37.2

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhh---hcCCCCCcc
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWL---KMNATCPLC  348 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL---~~~~tCPlC  348 (359)
                      .++..|+||++.+.++   ..++|+|.||..||++|+   +.+.+||+|
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            4567899999999887   558999999999999995   456789998

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.16  E-value=9e-12  Score=103.79  Aligned_cols=54  Identities=30%  Similarity=0.633  Sum_probs=46.7

Q ss_pred             CCCccccccCCCccCC----CceEEcCCCceeChhhHHHhhhcCCCCCcccccccCCC
Q 018193          303 PEDAECCICLSSYEDG----TELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN  356 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~----~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  356 (359)
                      +++.+|+||++.|++.    .....++|||.||..||++|++.+.+||+||.++.+++
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~  127 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR  127 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence            4567899999999763    45578899999999999999999999999999987653

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.16  E-value=1.4e-11  Score=90.88  Aligned_cols=53  Identities=23%  Similarity=0.522  Sum_probs=42.9

Q ss_pred             CCccccccCC-CccCCCce-EEcCCCceeChhhHHHhhhc-CCCCCcccccccCCC
Q 018193          304 EDAECCICLS-SYEDGTEL-HALPCNHHFHSTCIVKWLKM-NATCPLCKYNILKGN  356 (359)
Q Consensus       304 ~~~~C~ICL~-~~~~~~~l-r~LpC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~  356 (359)
                      ++..|+||++ .|.++... ..++|||.||..||++|+.. +.+||+||..+.+++
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   57 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence            3567999999 77776543 46799999999999999765 468999999987654

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.16  E-value=7.9e-12  Score=99.99  Aligned_cols=48  Identities=27%  Similarity=0.731  Sum_probs=42.2

Q ss_pred             CCccccccCCCccCCCceEEc-CCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193          304 EDAECCICLSSYEDGTELHAL-PCNHHFHSTCIVKWLKMNATCPLCKYNILK  354 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr~L-pC~H~FH~~CId~WL~~~~tCPlCR~~I~~  354 (359)
                      ++..|+||++.|.++   ..+ +|||.||..||.+|++.+.+||+||..+..
T Consensus        21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            456899999999875   455 899999999999999999999999998864

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.11  E-value=2.4e-11  Score=98.71  Aligned_cols=51  Identities=29%  Similarity=0.729  Sum_probs=43.3

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG  355 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  355 (359)
                      .++..|+||++.|.++  +..++|||.||..||.+|++.+.+||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           13 NPHLMCVLCGGYFIDA--TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             GGGTBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             CCcCCCccCChHHhCc--CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            3457899999999764  33349999999999999999999999999988753

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.08  E-value=3.5e-11  Score=100.19  Aligned_cols=48  Identities=21%  Similarity=0.607  Sum_probs=42.0

Q ss_pred             CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC-CCCcccccccC
Q 018193          304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA-TCPLCKYNILK  354 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~-tCPlCR~~I~~  354 (359)
                      ++..|+||++.|.++   ..+||||.||..||.+|++.+. +||+||.++..
T Consensus        51 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           51 ETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             cCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            446899999999876   6789999999999999998655 99999999865

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.07  E-value=5.2e-11  Score=103.96  Aligned_cols=49  Identities=29%  Similarity=0.752  Sum_probs=41.6

Q ss_pred             CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc-CCCCCcccccccC
Q 018193          304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM-NATCPLCKYNILK  354 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~-~~tCPlCR~~I~~  354 (359)
                      ++..|+||++.|.+.  +..+||||.||..||++|++. +.+||+||..+..
T Consensus        53 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           53 SELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HHHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            456899999999874  344599999999999999997 7799999998853

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.06  E-value=5.5e-11  Score=98.27  Aligned_cols=50  Identities=30%  Similarity=0.697  Sum_probs=43.5

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC-CCCcccccccCC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA-TCPLCKYNILKG  355 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~-tCPlCR~~I~~~  355 (359)
                      .++..|+||++.+.++   ..++|||.||..||.+|++.+. +||+||.++...
T Consensus        16 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (118)
T 3hct_A           16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (118)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence            4557899999999876   6689999999999999998766 999999988653

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.05  E-value=7.3e-11  Score=95.98  Aligned_cols=48  Identities=38%  Similarity=0.767  Sum_probs=41.6

Q ss_pred             CccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC---CCCcccccccCC
Q 018193          305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA---TCPLCKYNILKG  355 (359)
Q Consensus       305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~---tCPlCR~~I~~~  355 (359)
                      +..|+||++.|.++   ..+||||.||..||.+|+..+.   +||+||.++...
T Consensus        21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   71 (112)
T 1jm7_A           21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR   71 (112)
T ss_dssp             HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred             CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence            45799999999876   4579999999999999998764   899999988754

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.01  E-value=4.1e-11  Score=98.39  Aligned_cols=48  Identities=25%  Similarity=0.719  Sum_probs=42.1

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc-CCCCCccccccc
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM-NATCPLCKYNIL  353 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~-~~tCPlCR~~I~  353 (359)
                      .++..|+||++.|.+.   ..+||||.||..||.+|++. +.+||+||..+.
T Consensus        13 ~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   61 (115)
T 3l11_A           13 LSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS   61 (115)
T ss_dssp             HHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred             CCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence            3457899999999876   67899999999999999977 668999999875

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.99  E-value=9.6e-11  Score=96.29  Aligned_cols=49  Identities=31%  Similarity=0.729  Sum_probs=42.6

Q ss_pred             CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc-CCCCCcccccccCC
Q 018193          304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM-NATCPLCKYNILKG  355 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~  355 (359)
                      ++..|+||++.+.++   ..++|||.||..||++|++. +.+||+||.++...
T Consensus        22 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   71 (116)
T 1rmd_A           22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT   71 (116)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence            356899999999876   56899999999999999987 77999999988653

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.97  E-value=1.6e-10  Score=99.85  Aligned_cols=49  Identities=18%  Similarity=0.508  Sum_probs=42.8

Q ss_pred             CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC-CCCcccccccCC
Q 018193          304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA-TCPLCKYNILKG  355 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~-tCPlCR~~I~~~  355 (359)
                      ++..|+||++.|.++   ..+||+|.||..||.+|++.+. +||+||.++...
T Consensus        77 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           77 QSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             cCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            346899999999876   5689999999999999998765 899999998765

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.95  E-value=2.3e-10  Score=82.19  Aligned_cols=49  Identities=24%  Similarity=0.512  Sum_probs=41.4

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCCCC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNE  357 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~  357 (359)
                      .++..|+||++.|.+.   +.|||+|.||..||.+|   +.+||+||+.+...+.
T Consensus         4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~   52 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGAD   52 (56)
T ss_dssp             CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred             ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEeecCCc
Confidence            3457899999999886   67899999999999985   6789999998875543

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.94  E-value=2.6e-10  Score=84.31  Aligned_cols=47  Identities=30%  Similarity=0.545  Sum_probs=40.2

Q ss_pred             CCccccccCCCccCCCceEEc--CCCce-eChhhHHHhhhcCCCCCccccccc
Q 018193          304 EDAECCICLSSYEDGTELHAL--PCNHH-FHSTCIVKWLKMNATCPLCKYNIL  353 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr~L--pC~H~-FH~~CId~WL~~~~tCPlCR~~I~  353 (359)
                      ++.+|.||++...+.   ..+  ||||. |+.+|+++|.+.+.+||+||++|.
T Consensus         7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            456899999987664   444  99999 789999999999999999999885

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.90  E-value=8.9e-10  Score=84.81  Aligned_cols=53  Identities=19%  Similarity=0.452  Sum_probs=41.4

Q ss_pred             CCCccccccCCCccCCCceEEc--CCCceeChhhHHHhhh-cCCCCCcccccccCCC
Q 018193          303 PEDAECCICLSSYEDGTELHAL--PCNHHFHSTCIVKWLK-MNATCPLCKYNILKGN  356 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~L--pC~H~FH~~CId~WL~-~~~tCPlCR~~I~~~~  356 (359)
                      +++.+|+||++.+...+. ..+  +|||.||..|+.++.+ .+..||.||+.+.+.+
T Consensus         9 ~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~   64 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP   64 (78)
T ss_dssp             CCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred             ccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence            566789999999864332 344  4999999999999875 3568999999887644

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.88  E-value=8.9e-10  Score=108.43  Aligned_cols=47  Identities=28%  Similarity=0.724  Sum_probs=41.8

Q ss_pred             CccccccCCCccCCCceEEcCCCceeChhhHHHhhh-cCCCCCcccccccC
Q 018193          305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK-MNATCPLCKYNILK  354 (359)
Q Consensus       305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~-~~~tCPlCR~~I~~  354 (359)
                      ..+|+||++.+.+.   ..+||||.||..|+.+|+. .+.+||+||.++..
T Consensus       332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG  379 (389)
T ss_dssp             SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred             CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence            36899999998664   7899999999999999998 78899999998865

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.86  E-value=5.2e-10  Score=107.64  Aligned_cols=51  Identities=31%  Similarity=0.772  Sum_probs=41.2

Q ss_pred             CCCccccccCCCccCCCceE-----EcCCCceeChhhHHHhhhcC-----------CCCCccccccc
Q 018193          303 PEDAECCICLSSYEDGTELH-----ALPCNHHFHSTCIVKWLKMN-----------ATCPLCKYNIL  353 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr-----~LpC~H~FH~~CId~WL~~~-----------~tCPlCR~~I~  353 (359)
                      ....+|+||++.+.++.++.     ..+|+|.||..||.+||+..           ++||.||++|.
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            45678999999998854443     34699999999999999753           57999999875

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.86  E-value=3e-09  Score=85.69  Aligned_cols=50  Identities=16%  Similarity=0.231  Sum_probs=45.4

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG  355 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  355 (359)
                      +++..|+||++-|.++   ..+||||.|+..||.+|+..+.+||.||.++...
T Consensus        27 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~   76 (100)
T 2kre_A           27 PDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES   76 (100)
T ss_dssp             STTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred             cHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence            5678899999999998   7889999999999999999899999999988653

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.86  E-value=5.9e-10  Score=95.24  Aligned_cols=48  Identities=19%  Similarity=0.474  Sum_probs=42.2

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC-CCCccccccc
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA-TCPLCKYNIL  353 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~-tCPlCR~~I~  353 (359)
                      +++..|+||++.+.++   ..++|||.||..||.+|++.+. +||+||.++.
T Consensus        29 ~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~   77 (141)
T 3knv_A           29 EAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGI   77 (141)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred             CcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence            4567899999999887   6689999999999999998765 8999999764

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.86  E-value=1.5e-09  Score=84.67  Aligned_cols=49  Identities=16%  Similarity=0.216  Sum_probs=44.7

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK  354 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~  354 (359)
                      .++..|+||++-|.++   ..++|||.|+..||.+|+..+.+||.||.++..
T Consensus        12 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~   60 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE   60 (85)
T ss_dssp             CTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             chheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence            5678899999999998   788999999999999999999999999998754

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.85  E-value=7.9e-10  Score=81.45  Aligned_cols=48  Identities=27%  Similarity=0.503  Sum_probs=39.8

Q ss_pred             CccccccCCCccCCCceEEcCCCce-eChhhHHHhhhcCCCCCccccccc
Q 018193          305 DAECCICLSSYEDGTELHALPCNHH-FHSTCIVKWLKMNATCPLCKYNIL  353 (359)
Q Consensus       305 ~~~C~ICL~~~~~~~~lr~LpC~H~-FH~~CId~WL~~~~tCPlCR~~I~  353 (359)
                      +.+|.||++...+.. +..+||||. |+.+|+.+|.+.+.+||+||++|.
T Consensus         7 ~~~C~IC~~~~~~~~-~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            7 LKPCSLCEKRPRDGN-IIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GSBCTTTSSSBSCEE-EEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             CCCCcccCCcCCCeE-EEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            467999999866541 223499998 999999999998899999999885

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.84  E-value=7.3e-10  Score=91.32  Aligned_cols=48  Identities=23%  Similarity=0.546  Sum_probs=41.6

Q ss_pred             CCCccccccCCCccCCCceEEc-CCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193          303 PEDAECCICLSSYEDGTELHAL-PCNHHFHSTCIVKWLKMNATCPLCKYNILKG  355 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~L-pC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  355 (359)
                      .++..|+||++.|.++   ..+ +|||.||..||.+|+.  .+||+||..+...
T Consensus        20 ~~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~   68 (117)
T 1jm7_B           20 EKLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ   68 (117)
T ss_dssp             HHTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred             hhCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence            3467899999999876   566 8999999999999998  8899999988543

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.82  E-value=2.3e-09  Score=86.00  Aligned_cols=50  Identities=16%  Similarity=0.113  Sum_probs=45.3

Q ss_pred             CCCccccccCCCccCCCceEEcCCC-ceeChhhHHHhhhcCCCCCcccccccCC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCN-HHFHSTCIVKWLKMNATCPLCKYNILKG  355 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~-H~FH~~CId~WL~~~~tCPlCR~~I~~~  355 (359)
                      +++..|+||++-|.++   ..++|| |.|+..||.+|+..+.+||+||.++...
T Consensus        20 p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~   70 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             cHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence            5678899999999998   778999 9999999999999999999999988653

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.80  E-value=1.8e-09  Score=78.95  Aligned_cols=48  Identities=27%  Similarity=0.703  Sum_probs=37.8

Q ss_pred             CCCccccccCCCccCCCceEEcCCC--c---eeChhhHHHhhhc--CCCCCccccccc
Q 018193          303 PEDAECCICLSSYEDGTELHALPCN--H---HFHSTCIVKWLKM--NATCPLCKYNIL  353 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~--H---~FH~~CId~WL~~--~~tCPlCR~~I~  353 (359)
                      ++...|.||+++.  ++++ .+||.  |   .||..|+++|+..  +.+||+||+++.
T Consensus         4 ~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            3457899999983  3344 68965  4   9999999999975  678999998764

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.78  E-value=1.1e-09  Score=83.21  Aligned_cols=44  Identities=27%  Similarity=0.542  Sum_probs=38.3

Q ss_pred             CCccccccCCCccCCCceEEcCCCce-eChhhHHHhhhcCCCCCcccccccC
Q 018193          304 EDAECCICLSSYEDGTELHALPCNHH-FHSTCIVKWLKMNATCPLCKYNILK  354 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr~LpC~H~-FH~~CId~WL~~~~tCPlCR~~I~~  354 (359)
                      ++..|+||++.+.+.   ..+||||. |+..|+.+|    .+||+||.++.+
T Consensus        23 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           23 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVITF   67 (74)
T ss_dssp             HHTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred             cCCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence            456899999987664   77899999 999999999    889999998864

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.75  E-value=2.8e-09  Score=93.28  Aligned_cols=50  Identities=30%  Similarity=0.697  Sum_probs=43.2

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC-CCCcccccccCC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA-TCPLCKYNILKG  355 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~-tCPlCR~~I~~~  355 (359)
                      .++..|+||++.+.++   ..++|||.|+..||.+|++.+. +||+||.++..+
T Consensus        16 ~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (170)
T 3hcs_A           16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (170)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence            4567899999999876   6689999999999999998754 999999988653

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.63  E-value=3.1e-08  Score=74.06  Aligned_cols=47  Identities=21%  Similarity=0.634  Sum_probs=38.9

Q ss_pred             cCCCCccccccCCCccCCCceEEcCCCce-eChhhHHHhhhcCCCCCcccccccC
Q 018193          301 LLPEDAECCICLSSYEDGTELHALPCNHH-FHSTCIVKWLKMNATCPLCKYNILK  354 (359)
Q Consensus       301 ~~~~~~~C~ICL~~~~~~~~lr~LpC~H~-FH~~CId~WL~~~~tCPlCR~~I~~  354 (359)
                      ...++..|.||++...+   +..+||+|. |+..|+..    ..+||+||.+|..
T Consensus        11 ~~~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           11 SEENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE   58 (68)
T ss_dssp             SCCCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred             cCCCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence            33556789999998765   488999999 99999984    5789999998864

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.61  E-value=2e-08  Score=93.58  Aligned_cols=49  Identities=12%  Similarity=0.144  Sum_probs=43.1

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC-CCCcccccccC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA-TCPLCKYNILK  354 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~-tCPlCR~~I~~  354 (359)
                      ++...|+||++-|.++   ..+||||.|+..||.+|+..+. +||+||.++..
T Consensus       206 ~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          206 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence            4667899999999988   7899999999999999998754 59999998854

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=1.7e-08  Score=80.15  Aligned_cols=46  Identities=22%  Similarity=0.480  Sum_probs=39.6

Q ss_pred             CCCccccccCCCccCCCceEEcC-CCceeChhhHHHhhhcC------CCCCc--cccc
Q 018193          303 PEDAECCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKMN------ATCPL--CKYN  351 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~Lp-C~H~FH~~CId~WL~~~------~tCPl--CR~~  351 (359)
                      .++..|+||++-|.++   ..+| |||.|+..||.+|+..+      .+||+  |+..
T Consensus         5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            4567899999999987   6786 99999999999999864      48999  9865

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.54  E-value=2.5e-08  Score=75.69  Aligned_cols=45  Identities=27%  Similarity=0.524  Sum_probs=37.4

Q ss_pred             CCccccccCCCccCCCceEEcCCCce-eChhhHHHhhhcCCCCCcccccccCC
Q 018193          304 EDAECCICLSSYEDGTELHALPCNHH-FHSTCIVKWLKMNATCPLCKYNILKG  355 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr~LpC~H~-FH~~CId~WL~~~~tCPlCR~~I~~~  355 (359)
                      ++.+|+||++.+.+.   ..+||||. |+..|+.+    ..+||+||.++...
T Consensus        24 ~~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~   69 (75)
T 2ecg_A           24 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK   69 (75)
T ss_dssp             HHHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred             CCCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence            456799999998765   67899999 99999965    47899999988653

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.51  E-value=3.7e-08  Score=77.86  Aligned_cols=48  Identities=21%  Similarity=0.618  Sum_probs=40.5

Q ss_pred             CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc--------CCCCCc--cccc
Q 018193          304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM--------NATCPL--CKYN  351 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~--------~~tCPl--CR~~  351 (359)
                      +..+|+||++++.+++.+...+|+|.|+.+|+.++++.        ..+||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            35689999999988777666789999999999999964        237999  9987

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.45  E-value=3.2e-08  Score=76.08  Aligned_cols=44  Identities=23%  Similarity=0.675  Sum_probs=37.0

Q ss_pred             CCccccccCCCccCCCceEEcCCCce-eChhhHHHhhhcCCCCCcccccccC
Q 018193          304 EDAECCICLSSYEDGTELHALPCNHH-FHSTCIVKWLKMNATCPLCKYNILK  354 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr~LpC~H~-FH~~CId~WL~~~~tCPlCR~~I~~  354 (359)
                      ++..|.||++.+.+.   ..+||||. |+..|+.+|    ..||+||.++..
T Consensus        17 ~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~   61 (79)
T 2yho_A           17 EAMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVEH   61 (79)
T ss_dssp             HHTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred             CCCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence            346899999987654   78899999 999999987    389999998754

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.39  E-value=1.2e-07  Score=83.93  Aligned_cols=50  Identities=12%  Similarity=0.141  Sum_probs=43.4

Q ss_pred             CCCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcC-CCCCcccccccC
Q 018193          302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN-ATCPLCKYNILK  354 (359)
Q Consensus       302 ~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~-~tCPlCR~~I~~  354 (359)
                      .++...|+||++-|.++   ..+||||.|...||.+|+..+ .+||.|+.++..
T Consensus       103 ip~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          103 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CcHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            35667899999999987   778999999999999999874 479999998754

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.32  E-value=1.8e-07  Score=91.11  Aligned_cols=45  Identities=24%  Similarity=0.620  Sum_probs=39.1

Q ss_pred             CCCccccccCCCccCCCceEEcCCCce-eChhhHHHhhhcCCCCCcccccccC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHH-FHSTCIVKWLKMNATCPLCKYNILK  354 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~-FH~~CId~WL~~~~tCPlCR~~I~~  354 (359)
                      .++..|+||++.+.+.   ..+||||. ||..|+.+|    ..||+||.++..
T Consensus       293 ~~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~  338 (345)
T 3t6p_A          293 QEERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIKG  338 (345)
T ss_dssp             HTTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred             cCCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence            4567899999998765   77899999 999999998    789999998854

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.31  E-value=1.9e-07  Score=68.35  Aligned_cols=47  Identities=11%  Similarity=0.101  Sum_probs=41.7

Q ss_pred             ccccccCCCccCCCceEEc-CCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193          306 AECCICLSSYEDGTELHAL-PCNHHFHSTCIVKWLKMNATCPLCKYNILKG  355 (359)
Q Consensus       306 ~~C~ICL~~~~~~~~lr~L-pC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  355 (359)
                      ..|+||++-++++   ..+ +|||.|-..||.+|++.+.+||+++.++...
T Consensus         4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~   51 (61)
T 2bay_A            4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE   51 (61)
T ss_dssp             CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence            5699999999976   666 8999999999999999999999999987543

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.06  E-value=1.3e-06  Score=81.52  Aligned_cols=50  Identities=28%  Similarity=0.503  Sum_probs=41.1

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcC--CCCCc--ccccccC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN--ATCPL--CKYNILK  354 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~--~tCPl--CR~~I~~  354 (359)
                      ..+..|+||++-|.++  ++.+.|||.|+..||.+|++.+  .+||.  ||..+..
T Consensus       179 ~~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~  232 (267)
T 3htk_C          179 KIELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM  232 (267)
T ss_dssp             BCCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred             ceeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence            3457899999999776  3446899999999999999865  47999  9987754

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.85  E-value=8.2e-06  Score=75.41  Aligned_cols=52  Identities=27%  Similarity=0.546  Sum_probs=41.8

Q ss_pred             CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC--CCCcccccccCCCC
Q 018193          304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA--TCPLCKYNILKGNE  357 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~--tCPlCR~~I~~~~~  357 (359)
                      ...+|.||.+-...+....  .|+|.||..|+++|++.+.  +||.|+.+......
T Consensus       179 ~i~~C~iC~~iv~~g~~C~--~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~  232 (238)
T 3nw0_A          179 AVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP  232 (238)
T ss_dssp             TCCBCTTTCSBCSSCEECS--SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred             CCCcCcchhhHHhCCcccC--ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence            4678999999988773332  3999999999999998765  89999998765543

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.69  E-value=1.9e-05  Score=62.80  Aligned_cols=45  Identities=24%  Similarity=0.544  Sum_probs=36.4

Q ss_pred             ccccCCCccCCCceEEcCCCceeChhhHHHhhhc-CCCCCcccccccC
Q 018193          308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM-NATCPLCKYNILK  354 (359)
Q Consensus       308 C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~-~~tCPlCR~~I~~  354 (359)
                      |.+|--.+.  ...|.+||+|.|+-+|+..|.++ .++||.|+.+|.+
T Consensus         4 C~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            4 CDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             CTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             cCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            666655543  35689999999999999999855 6799999998864

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=94.43  E-value=0.048  Score=40.02  Aligned_cols=47  Identities=21%  Similarity=0.448  Sum_probs=34.2

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC----CCCcccccc
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA----TCPLCKYNI  352 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~----tCPlCR~~I  352 (359)
                      ..+..|.||-+   .++.+.-=.|...||..|++..|....    .||.|+..-
T Consensus        10 ~~~~~C~vC~~---~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~   60 (66)
T 2lri_C           10 APGARCGVCGD---GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV   60 (66)
T ss_dssp             CTTCCCTTTSC---CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred             CCCCCcCCCCC---CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence            34577999974   344333334899999999999986543    699998654

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=94.12  E-value=0.033  Score=43.64  Aligned_cols=36  Identities=14%  Similarity=0.370  Sum_probs=28.7

Q ss_pred             CCccccccCCCccCCCceEEcCCCceeChhhHHH-hh
Q 018193          304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVK-WL  339 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~-WL  339 (359)
                      ++..|.||+++|..+....-++|+|.|+..|+.. |-
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~   38 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP   38 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence            4568999998865554555699999999999998 54

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=91.83  E-value=0.07  Score=38.48  Aligned_cols=49  Identities=22%  Similarity=0.464  Sum_probs=34.5

Q ss_pred             CCCccccccCCCccCCCceEE-cCCCceeChhhHHHhhh-----cCCCCCccccc
Q 018193          303 PEDAECCICLSSYEDGTELHA-LPCNHHFHSTCIVKWLK-----MNATCPLCKYN  351 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~-LpC~H~FH~~CId~WL~-----~~~tCPlCR~~  351 (359)
                      .++..|+||...|.++..... -.|...||..|+.---.     ..-.||.|+..
T Consensus         4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k   58 (64)
T 1we9_A            4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence            455679999999875544333 34999999999975432     23479999653

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}

Probab=89.31  E-value=0.092  Score=37.48  Aligned_cols=52  Identities=31%  Similarity=0.630  Sum_probs=36.7

Q ss_pred             CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC----CCCcccccccCCCCC
Q 018193          304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA----TCPLCKYNILKGNEQ  358 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~----tCPlCR~~I~~~~~~  358 (359)
                      ++..|.+|-..   ++.+.--.|...||..|+++=+....    .||.|+....+.++-
T Consensus         4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~~~~   59 (60)
T 2puy_A            4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKKEEA   59 (60)
T ss_dssp             CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHHTTTT
T ss_pred             CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhchhcc
Confidence            46789999874   44333335899999999997654322    599998877666553

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=89.26  E-value=0.25  Score=37.88  Aligned_cols=36  Identities=19%  Similarity=0.544  Sum_probs=24.4

Q ss_pred             CCCCccccccCCCccCCCceEEcCCCceeChhhHHHh
Q 018193          302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKW  338 (359)
Q Consensus       302 ~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~W  338 (359)
                      ...|..|.||- .+..++.+.-=-|+-.||..|+.+-
T Consensus        12 ~~~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~   47 (89)
T 1wil_A           12 VVNDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred             CCCCcccCccc-cccccceeccccccccccHhhcccc
Confidence            35678899984 4444432222228899999999995

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=88.80  E-value=0.16  Score=37.72  Aligned_cols=53  Identities=19%  Similarity=0.341  Sum_probs=35.7

Q ss_pred             CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc----CCCCCcccccccCCC
Q 018193          304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM----NATCPLCKYNILKGN  356 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~----~~tCPlCR~~I~~~~  356 (359)
                      ++..|.||-.....+.-+.-=.|.-.||..|+..-...    .-.||.|+..+.+..
T Consensus        17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~k   73 (75)
T 2k16_A           17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKDK   73 (75)
T ss_dssp             EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSCC
T ss_pred             CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhcc
Confidence            34569999887643223332348999999999865543    236999988776543

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=88.76  E-value=0.31  Score=34.91  Aligned_cols=46  Identities=20%  Similarity=0.549  Sum_probs=32.3

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcC----CCCCccccc
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN----ATCPLCKYN  351 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~----~tCPlCR~~  351 (359)
                      .++..|.||-..   ++.+.--.|...||..|++.=+...    =.||.|+..
T Consensus         9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~   58 (61)
T 2l5u_A            9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE   58 (61)
T ss_dssp             CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred             CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence            456789999863   4333333488999999999865432    269999763

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=87.81  E-value=0.2  Score=35.89  Aligned_cols=50  Identities=28%  Similarity=0.544  Sum_probs=34.1

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC----CCCcccccccCC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA----TCPLCKYNILKG  355 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~----tCPlCR~~I~~~  355 (359)
                      .++..|.||-+.   ++.+.--.|...||..|++.=|....    .||.|+....++
T Consensus         7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~k~   60 (61)
T 1mm2_A            7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKG   60 (61)
T ss_dssp             SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCTT
T ss_pred             CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchhcC
Confidence            346679999752   33322224889999999997654322    599998876654

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=86.37  E-value=0.44  Score=32.55  Aligned_cols=44  Identities=30%  Similarity=0.591  Sum_probs=30.0

Q ss_pred             cccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC----CCCcccc
Q 018193          307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA----TCPLCKY  350 (359)
Q Consensus       307 ~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~----tCPlCR~  350 (359)
                      .|.||...-+.++.+.--.|...||..|++.=+....    .||.|+.
T Consensus         2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~   49 (51)
T 1f62_A            2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence            5889987644444444445999999999986444322    5999975

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=85.66  E-value=0.48  Score=37.79  Aligned_cols=47  Identities=26%  Similarity=0.606  Sum_probs=31.6

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc----CCCCCccc
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM----NATCPLCK  349 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~----~~tCPlCR  349 (359)
                      .++..|.||.+.=+..+.+.--.|...||..|++..+..    .-.||.|+
T Consensus         5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~   55 (111)
T 2ysm_A            5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK   55 (111)
T ss_dssp             CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred             CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence            466789999886333333444459999999999987742    12466553

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.90  E-value=0.3  Score=34.25  Aligned_cols=45  Identities=29%  Similarity=0.616  Sum_probs=31.3

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC----CCCcccc
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA----TCPLCKY  350 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~----tCPlCR~  350 (359)
                      .++..|.+|-..   ++.+.--.|...||..|+++=|....    .||.|+.
T Consensus         7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~   55 (56)
T 2yql_A            7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD   55 (56)
T ss_dssp             SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred             CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence            456789999874   43333335889999999997654322    5988854

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*

Probab=83.79  E-value=0.67  Score=31.91  Aligned_cols=43  Identities=19%  Similarity=0.386  Sum_probs=30.0

Q ss_pred             cccccCCCccCCCceEE-c-CCCceeChhhHHHhh----hcCCCCCccc
Q 018193          307 ECCICLSSYEDGTELHA-L-PCNHHFHSTCIVKWL----KMNATCPLCK  349 (359)
Q Consensus       307 ~C~ICL~~~~~~~~lr~-L-pC~H~FH~~CId~WL----~~~~tCPlCR  349 (359)
                      .|++|...|.+++.... - .|...||..|+.---    ..+-.||.|+
T Consensus         4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~   52 (52)
T 2kgg_A            4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA   52 (52)
T ss_dssp             SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred             cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence            58899999876554333 3 488899999987432    2455799985

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.72  E-value=0.32  Score=37.86  Aligned_cols=49  Identities=24%  Similarity=0.524  Sum_probs=33.2

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC----CCCccccc
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA----TCPLCKYN  351 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~----tCPlCR~~  351 (359)
                      .++..|.||...-..++.+.-=.|...||..|+++=|....    .||.|+..
T Consensus        14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~   66 (92)
T 2e6r_A           14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA   66 (92)
T ss_dssp             CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred             cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence            45667999998754333333334999999999985443322    49999753

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A

Probab=83.10  E-value=0.52  Score=34.19  Aligned_cols=46  Identities=24%  Similarity=0.584  Sum_probs=32.2

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC----CCCccccc
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA----TCPLCKYN  351 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~----tCPlCR~~  351 (359)
                      .++..|.||-..   ++.+.-=.|...||..|++.=|....    .||.|+..
T Consensus         6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~   55 (66)
T 1xwh_A            6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA   55 (66)
T ss_dssp             SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred             CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence            456789999863   43333334889999999997654322    59999754

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=82.07  E-value=0.91  Score=35.58  Aligned_cols=46  Identities=24%  Similarity=0.417  Sum_probs=31.1

Q ss_pred             CccccccCCCccCCCceEEcCCCceeChhhHHHhhhc---CCCCCcccc
Q 018193          305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM---NATCPLCKY  350 (359)
Q Consensus       305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~---~~tCPlCR~  350 (359)
                      +..-+||-...+++..+.-=.|.-.||..|+..=+..   .-.||.|+.
T Consensus        27 d~vrCiC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~   75 (98)
T 2lv9_A           27 DVTRCICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP   75 (98)
T ss_dssp             CBCCCTTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred             CCEEeECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence            3333399888776654444459999999999753322   236999974

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=80.69  E-value=1.6  Score=33.77  Aligned_cols=47  Identities=23%  Similarity=0.513  Sum_probs=33.1

Q ss_pred             CCCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC----CCCccccc
Q 018193          302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA----TCPLCKYN  351 (359)
Q Consensus       302 ~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~----tCPlCR~~  351 (359)
                      ..++..|.+|...   ++-+.--.|.-.||..|+++=|....    .||.|+..
T Consensus        22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~   72 (88)
T 1fp0_A           22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL   72 (88)
T ss_dssp             SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred             CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence            3566789999864   44333334889999999987665422    59999754

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=80.54  E-value=1.6  Score=32.66  Aligned_cols=46  Identities=22%  Similarity=0.481  Sum_probs=30.6

Q ss_pred             ccccccCCCccCCCc-eEEcCCCceeChhhHHHhhh-----cCCCCCccccc
Q 018193          306 AECCICLSSYEDGTE-LHALPCNHHFHSTCIVKWLK-----MNATCPLCKYN  351 (359)
Q Consensus       306 ~~C~ICL~~~~~~~~-lr~LpC~H~FH~~CId~WL~-----~~~tCPlCR~~  351 (359)
                      ...+||-..+.++.. +.--.|...||..|+.-=-.     ..-.||.|+..
T Consensus        12 ~~~C~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~   63 (79)
T 1wep_A           12 PVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV   63 (79)
T ss_dssp             CCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred             ccEEEcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence            344499998864443 33334999999999963221     23479999864

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}

Probab=80.26  E-value=0.61  Score=35.92  Aligned_cols=54  Identities=24%  Similarity=0.411  Sum_probs=34.0

Q ss_pred             cCCCCccccccCCCcc-CCCceEEc-CCCceeChhhHHHhhhc--CCCCCcccccccC
Q 018193          301 LLPEDAECCICLSSYE-DGTELHAL-PCNHHFHSTCIVKWLKM--NATCPLCKYNILK  354 (359)
Q Consensus       301 ~~~~~~~C~ICL~~~~-~~~~lr~L-pC~H~FH~~CId~WL~~--~~tCPlCR~~I~~  354 (359)
                      ...++..|.||...-. +++.+..- .|.-.||..|+..=+.-  .=-||.|+.....
T Consensus        21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~   78 (88)
T 2l43_A           21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR   78 (88)
T ss_dssp             CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred             cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence            3456788999997642 22232222 38899999999854311  1259999765443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	359
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	9e-18
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	1e-13
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	5e-11
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	7e-11
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	7e-10
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	1e-08
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	4e-08
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	8e-08
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	8e-08
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	1e-07
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	9e-07
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	1e-06
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	5e-05
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	9e-04

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 74.1 bits (182), Expect = 9e-18
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 302 LPEDAECCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKMNATCPLCKYNIL 353
           + +  EC +CL+  EDG E   LP C H FH+ C+  WL  ++TCPLC+  ++
Sbjct: 2   MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 63.4 bits (154), Expect = 1e-13
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352
            C ICL    + +   ALPC H F   CI +W++ N TCPLCK  +
Sbjct: 7   RCPICLEDPSNYS--MALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (135), Expect = 5e-11
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN-ATCPLCKYNI 352
               C IC  + +D       PC H   ++C+  W +     CP C+  I
Sbjct: 22  TFQLCKICAENDKDVKIE---PCGHLMCTSCLTSWQESEGQGCPFCRCEI 68

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (134), Expect = 7e-11
 Identities = 17/61 (27%), Positives = 20/61 (32%), Gaps = 15/61 (24%)

Query: 304 EDAECCICLSSYEDGT---------------ELHALPCNHHFHSTCIVKWLKMNATCPLC 348
               C IC +   D                  +    CNH FH  CI +WLK    CPL 
Sbjct: 20  VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 79

Query: 349 K 349
            
Sbjct: 80  N 80

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 7e-10
 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 3/56 (5%)

Query: 304 EDAECCICLSSYEDGTELHAL--PCNHHFHSTCIVKWLKMN-ATCPLCKYNILKGN 356
           +D  C  C ++      L  +   C H    +C+          CP C   + K N
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (116), Expect = 1e-08
 Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 6/49 (12%)

Query: 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352
           +   C  C +  +       LPC H   S C+         CP+C+   
Sbjct: 5   QFLRCQQCQAEAKCPK---LLPCLHTLCSGCLEAS---GMQCPICQAPW 47

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.9 bits (115), Expect = 4e-08
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 22/82 (26%)

Query: 298 ERILLPEDAECCICLSSYEDGTELHA---------------LPCNHHFHSTCIVKWLK-- 340
           E + +  + +C IC+      +                     C+H FH  C++      
Sbjct: 18  EELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNG 77

Query: 341 ---MNATCPLCK--YNILKGNE 357
               +  CP CK  Y    G +
Sbjct: 78  NKDGSLQCPSCKTIYGEKTGTQ 99

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 46.4 bits (109), Expect = 8e-08
 Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 4/53 (7%)

Query: 304 EDAECCICLSSYEDGTEL--HALPCNHHFHSTCIVKWLK--MNATCPLCKYNI 352
           +   C IC     +             + H +C+  WL    N  C +C    
Sbjct: 5   DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (113), Expect = 8e-08
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWL---KMNATCPLCKYNILKGN 356
           + +  EC ICL   ++        C+H F   C++K L   K  + CPLCK +I K +
Sbjct: 18  MQKILECPICLELIKEPVST---KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 1e-07
 Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 2/45 (4%)

Query: 307 ECCICLSSYEDG-TELHALPCNHHFHSTCIVKWLKM-NATCPLCK 349
           EC +C+   E          C +     C  +     N  CP C+
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACR 46

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 9e-07
 Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 8/55 (14%)

Query: 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM--------NATCPLCKY 350
             + C +CL  Y          C   F + C+ +++++          +CP    
Sbjct: 4   GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC 58

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.7 bits (103), Expect = 1e-06
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK-MNATCPLCKYNI 352
             +   C IC     D  E     C H F   CI++ LK M + CP C+Y  
Sbjct: 20  FVKSISCQICEHILADPVETS---CKHLFCRICILRCLKVMGSYCPSCRYPC 68

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 5e-05
 Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 4/55 (7%)

Query: 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 356
           L +   C  C +   +   L    C H F S C+   +     CP+C       +
Sbjct: 19  LEKLLRCSRCTNILREPVCL--GGCEHIFCSNCVSDCIGT--GCPVCYTPAWIQD 69

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 35.4 bits (81), Expect = 9e-04
 Identities = 11/53 (20%), Positives = 15/53 (28%), Gaps = 3/53 (5%)

Query: 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354
            PE   C I L   +D   +        +  + I KWL             L 
Sbjct: 5   FPEYFRCPISLELMKDPVIVS---TGQTYERSSIQKWLDAGHKTCPKSQETLL 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	359
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.73
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.51
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.48
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.46
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.44
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.43
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.39
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.21
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.21
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.12
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.12
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.11
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.95
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.9
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.88
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.69
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.5
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	93.6
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	92.88
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	91.08
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	89.58
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	88.59
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	86.33
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	86.23
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	86.23
d1weea_	72	PHD finger protein At1g33420 {Thale cress (Arabido	84.98
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	84.06
d1wewa_	78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	83.95

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.73  E-value=7.3e-19  Score=125.39  Aligned_cols=51  Identities=43%  Similarity=1.102  Sum_probs=47.0

Q ss_pred             CCCccccccCCCccCCCceEEcC-CCceeChhhHHHhhhcCCCCCccccccc
Q 018193          303 PEDAECCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKMNATCPLCKYNIL  353 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~Lp-C~H~FH~~CId~WL~~~~tCPlCR~~I~  353 (359)
                      +++.+|+||+++|++++.++.+| |+|.||.+||++|++++++||+||++|.
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            45678999999999999999886 9999999999999999999999999875

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.51  E-value=4.2e-15  Score=109.98  Aligned_cols=49  Identities=41%  Similarity=0.883  Sum_probs=42.9

Q ss_pred             CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193          304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK  354 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~  354 (359)
                      ..++|+||++.+.++  .+.+||+|.||.+||.+|++.+.+||+||+++.+
T Consensus         4 ~~d~C~IC~~~~~~~--~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~   52 (68)
T d1chca_           4 VAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCccCCcCccCC--cEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchHh
Confidence            346799999999753  5779999999999999999999999999998743

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.1e-14  Score=113.20  Aligned_cols=50  Identities=34%  Similarity=0.625  Sum_probs=42.4

Q ss_pred             CCccccccCCCccCCC---------------ceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193          304 EDAECCICLSSYEDGT---------------ELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL  353 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~---------------~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~  353 (359)
                      .+++|+||++++.+..               .+..++|+|.||..||++||+.+.+||+||++..
T Consensus        20 ~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          20 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            3456999999886533               3678899999999999999999999999999764

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.5e-15  Score=104.18  Aligned_cols=49  Identities=20%  Similarity=0.476  Sum_probs=41.8

Q ss_pred             cccccCCCccCCCc-eEEcCCCceeChhhHHHhhhc-CCCCCcccccccCC
Q 018193          307 ECCICLSSYEDGTE-LHALPCNHHFHSTCIVKWLKM-NATCPLCKYNILKG  355 (359)
Q Consensus       307 ~C~ICL~~~~~~~~-lr~LpC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~  355 (359)
                      +|+||+++|++++. +..++|||.||.+|+++|++. +.+||+||+++.++
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~d   52 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED   52 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSCC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCCC
Confidence            79999999987765 456689999999999999986 45799999988653

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=2.8e-14  Score=115.60  Aligned_cols=52  Identities=23%  Similarity=0.502  Sum_probs=41.8

Q ss_pred             CCCccccccCCCccC---------------CCceEEcCCCceeChhhHHHhhhcC-----CCCCcccccccC
Q 018193          303 PEDAECCICLSSYED---------------GTELHALPCNHHFHSTCIVKWLKMN-----ATCPLCKYNILK  354 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~---------------~~~lr~LpC~H~FH~~CId~WL~~~-----~tCPlCR~~I~~  354 (359)
                      ..+.+|+||++++.+               ...++.++|+|.||.+||++||+.+     .+||+||+.+..
T Consensus        23 ~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             cccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            345689999998853               3346788999999999999999754     389999987744

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.2e-14  Score=104.25  Aligned_cols=53  Identities=23%  Similarity=0.492  Sum_probs=43.0

Q ss_pred             CCccccccCCCccCC--CceEEcCCCceeChhhHHHhhhc-CCCCCcccccccCCC
Q 018193          304 EDAECCICLSSYEDG--TELHALPCNHHFHSTCIVKWLKM-NATCPLCKYNILKGN  356 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~--~~lr~LpC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~  356 (359)
                      ++..|+||++++..+  ..+..++|||.||.+||.+|++. +.+||+||+++.+.+
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~   57 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccccc
Confidence            457899999986433  34567789999999999999965 568999999987655

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.1e-13  Score=105.18  Aligned_cols=49  Identities=27%  Similarity=0.732  Sum_probs=42.2

Q ss_pred             CccccccCCCccCCCceEEcCCCceeChhhHHHhhhc-CCCCCcccccccCCC
Q 018193          305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM-NATCPLCKYNILKGN  356 (359)
Q Consensus       305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~  356 (359)
                      ...|+||++.+.+   .+.+||||.||.+||++||+. +.+||+||.+|...+
T Consensus        23 ~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          23 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             TTBCTTTSSSBCC---EECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred             CCCCccCCCcCCC---eEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence            4579999998876   488999999999999999974 578999999997654

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.21  E-value=1.4e-12  Score=92.48  Aligned_cols=46  Identities=13%  Similarity=0.167  Sum_probs=41.1

Q ss_pred             cccccCCCccCCCceEEcC-CCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193          307 ECCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKMNATCPLCKYNILKG  355 (359)
Q Consensus       307 ~C~ICL~~~~~~~~lr~Lp-C~H~FH~~CId~WL~~~~tCPlCR~~I~~~  355 (359)
                      .|+||++.++++   ..++ |||.||.+||.+||+.+.+||+||+++..+
T Consensus         2 ~C~Ic~~~~~~P---v~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~   48 (56)
T d2baya1           2 LCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE   48 (56)
T ss_dssp             CCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             CCccCCchHHhc---CccCCCCCcccHHHHHHHHhhccCCCccCCcCCHH
Confidence            599999999876   5665 999999999999999999999999988654

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.1e-12  Score=93.03  Aligned_cols=47  Identities=26%  Similarity=0.549  Sum_probs=40.5

Q ss_pred             CccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCCCC
Q 018193          305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNE  357 (359)
Q Consensus       305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~  357 (359)
                      ..+|+||++.|.++   +.+||||.||..||++|   +.+||+||+++..+.+
T Consensus         6 ~l~C~IC~~~~~~p---~~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~   52 (56)
T d1bora_           6 FLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGAD   52 (56)
T ss_dssp             CSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred             CCCCcccCcccCCC---EEecCCCHHhHHHHHcC---CCcCcCCCCcccCCCC
Confidence            35899999999876   67899999999999887   7789999999976543

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.12  E-value=9.1e-12  Score=89.35  Aligned_cols=48  Identities=23%  Similarity=0.612  Sum_probs=37.9

Q ss_pred             CCCccccccCCCccCCCceEEcCC-----CceeChhhHHHhhh--cCCCCCccccccc
Q 018193          303 PEDAECCICLSSYEDGTELHALPC-----NHHFHSTCIVKWLK--MNATCPLCKYNIL  353 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC-----~H~FH~~CId~WL~--~~~tCPlCR~~I~  353 (359)
                      ++...|.||+++++++   ...||     +|.||..||++|++  .+.+||+||+++.
T Consensus         4 ed~~~C~IC~~~~~~~---~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNE---RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCC---CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCc---eeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            4567899999998765   33444     59999999999995  4568999998763

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=1.1e-11  Score=95.50  Aligned_cols=49  Identities=31%  Similarity=0.718  Sum_probs=42.0

Q ss_pred             CccccccCCCccCCCceEEcCCCceeChhhHHHhhhcC-CCCCcccccccCCC
Q 018193          305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN-ATCPLCKYNILKGN  356 (359)
Q Consensus       305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~-~tCPlCR~~I~~~~  356 (359)
                      ...|+||++.+.+.   ..++|||.|+..||.+|++.+ .+||.||.++.+.+
T Consensus        23 ~l~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~   72 (86)
T d1rmda2          23 SISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD   72 (86)
T ss_dssp             HTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             CcCCccCCcchhcc---eecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhh
Confidence            35799999999876   789999999999999999754 58999999886543

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.3e-11  Score=98.00  Aligned_cols=49  Identities=37%  Similarity=0.758  Sum_probs=41.4

Q ss_pred             CccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC---CCCcccccccCCC
Q 018193          305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA---TCPLCKYNILKGN  356 (359)
Q Consensus       305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~---tCPlCR~~I~~~~  356 (359)
                      ..+|+||++.|+++   ..+||||.||..||.+|++.+.   +||+||.++...+
T Consensus        21 ~l~CpIC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   72 (103)
T d1jm7a_          21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS   72 (103)
T ss_dssp             HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred             CcCCCccCchhCCe---EEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhh
Confidence            35799999999876   5689999999999999997653   7999999886543

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=9e-11  Score=92.00  Aligned_cols=49  Identities=20%  Similarity=0.502  Sum_probs=39.7

Q ss_pred             CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCCC
Q 018193          304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN  356 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  356 (359)
                      +...|+||++.|.++  +...+|||.||..||.+|+.  .+||.||.++...+
T Consensus        21 ~~l~C~IC~~~~~~p--v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~   69 (97)
T d1jm7b_          21 KLLRCSRCTNILREP--VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD   69 (97)
T ss_dssp             HTTSCSSSCSCCSSC--BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred             hcCCCccCCchhhcC--ceeCCCCCchhHHHHHHHHh--ccccccCCcCchhh
Confidence            346899999999876  23347999999999999984  46999999876543

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=4.1e-10  Score=85.04  Aligned_cols=50  Identities=12%  Similarity=0.144  Sum_probs=43.5

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc-CCCCCcccccccCC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM-NATCPLCKYNILKG  355 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~  355 (359)
                      +++..|+||++-|.++   ..++|||.|+..||.+|+.. +.+||.||.++...
T Consensus         5 P~~l~CpIc~~l~~dP---v~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~   55 (80)
T d2c2la2           5 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE   55 (80)
T ss_dssp             CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred             CccccCcCcCchhhhh---cccCCcCeecHHHHHHHHhcCCccCCCcccccccc
Confidence            5678899999999887   67899999999999999975 55899999987643

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.88  E-value=5.3e-10  Score=83.96  Aligned_cols=50  Identities=28%  Similarity=0.553  Sum_probs=43.8

Q ss_pred             CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcC-CCCCcccccccCC
Q 018193          303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN-ATCPLCKYNILKG  355 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~-~tCPlCR~~I~~~  355 (359)
                      +++..|+||++-|.++   ..++|||.|+..||.+|++.+ .+||.|+.++...
T Consensus         6 P~~l~CpIc~~~m~dP---V~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~   56 (78)
T d1t1ha_           6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             CccCCCcCcCchhhCc---eEccCCCcchHHHHHHHHHHCCCCCCcccccCCcc
Confidence            4678899999999987   678999999999999999875 5799999988654

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=7.7e-09  Score=81.05  Aligned_cols=51  Identities=16%  Similarity=0.103  Sum_probs=45.0

Q ss_pred             CCCCccccccCCCccCCCceEEcCCC-ceeChhhHHHhhhcCCCCCcccccccCC
Q 018193          302 LPEDAECCICLSSYEDGTELHALPCN-HHFHSTCIVKWLKMNATCPLCKYNILKG  355 (359)
Q Consensus       302 ~~~~~~C~ICL~~~~~~~~lr~LpC~-H~FH~~CId~WL~~~~tCPlCR~~I~~~  355 (359)
                      .+++..|+||++-|.++   ..+||+ |.|...||.+||+.+.+||+|+.++...
T Consensus        19 ~P~~f~CPI~~~lm~dP---V~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~   70 (98)
T d1wgma_          19 ACDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             CCTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             CcHHhCCcCchhHHHHH---HhcccccchhhHHHHHHHHHhcCCcccccccccch
Confidence            45678999999999998   788866 5799999999999999999999988654

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.8e-08  Score=77.78  Aligned_cols=45  Identities=20%  Similarity=0.576  Sum_probs=37.4

Q ss_pred             CccccccCCCccCCCceEEcCCCceeChhhHHHhhhcC--------CCCCccc
Q 018193          305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN--------ATCPLCK  349 (359)
Q Consensus       305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~--------~tCPlCR  349 (359)
                      ..+|+||++++..++.+..++|+|.||.+|+..|++.+        -+||.|+
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~   57 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA   57 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence            46899999999887777777899999999999999531        2699854

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.60  E-value=0.019  Score=37.98  Aligned_cols=44  Identities=30%  Similarity=0.591  Sum_probs=31.0

Q ss_pred             cccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC----CCCcccc
Q 018193          307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA----TCPLCKY  350 (359)
Q Consensus       307 ~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~----tCPlCR~  350 (359)
                      .|.||-..-++++.+.-=.|+..||..|++.-+....    .||.||.
T Consensus         2 ~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCCCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            5888976654443333334899999999998875433    5999985

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.88  E-value=0.016  Score=40.27  Aligned_cols=49  Identities=22%  Similarity=0.491  Sum_probs=34.8

Q ss_pred             CCCccccccCCCccCCCceEEc-CCCceeChhhHHHhh---h--cCCCCCccccc
Q 018193          303 PEDAECCICLSSYEDGTELHAL-PCNHHFHSTCIVKWL---K--MNATCPLCKYN  351 (359)
Q Consensus       303 ~~~~~C~ICL~~~~~~~~lr~L-pC~H~FH~~CId~WL---~--~~~tCPlCR~~  351 (359)
                      .++..|.+|...+++++....= .|+..||..|++.=.   .  .+-.||.|+..
T Consensus         4 ~~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~   58 (64)
T d1we9a_           4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCc
Confidence            3456899999998887664433 499999999997321   1  13379999754

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.08  E-value=0.083  Score=37.19  Aligned_cols=46  Identities=24%  Similarity=0.501  Sum_probs=31.0

Q ss_pred             CccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC----CCCccccccc
Q 018193          305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA----TCPLCKYNIL  353 (359)
Q Consensus       305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~----tCPlCR~~I~  353 (359)
                      ...|.||..   .++.+.-=.|...||..|++..+....    .||.|+..-.
T Consensus         7 c~~C~~C~~---~~~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~   56 (70)
T d1fp0a1           7 ATICRVCQK---PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD   56 (70)
T ss_dssp             SSCCSSSCS---SSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred             CCCCCCCCC---cCEEEECCCCChhhccccCCCCcCcCCCCCEECcCCcCcCc
Confidence            456777753   344333334899999999998875543    5999976443

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.58  E-value=0.06  Score=36.85  Aligned_cols=49  Identities=29%  Similarity=0.560  Sum_probs=33.3

Q ss_pred             CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC----CCCcccccccCC
Q 018193          304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA----TCPLCKYNILKG  355 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~----tCPlCR~~I~~~  355 (359)
                      ++..|.+|.+   .++.+.-=.|.-.||..|++.-+....    .||.|+..-.++
T Consensus         8 ~~~~C~~C~~---~g~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~~kg   60 (61)
T d1mm2a_           8 HMEFCRVCKD---GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKG   60 (61)
T ss_dssp             SCSSCTTTCC---CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCTT
T ss_pred             CcCCCcCCCC---CCeEEEeCCCCccCchhhcCCCcCcCCCCcEECCCCcCcccCC
Confidence            3456999974   343222224889999999987765422    699998776654

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.59  E-value=0.13  Score=36.35  Aligned_cols=45  Identities=24%  Similarity=0.645  Sum_probs=26.8

Q ss_pred             CCccccccCCCccCCCceEEc--CCC-ceeChhhHHHhhhcC----CCCCccccc
Q 018193          304 EDAECCICLSSYEDGTELHAL--PCN-HHFHSTCIVKWLKMN----ATCPLCKYN  351 (359)
Q Consensus       304 ~~~~C~ICL~~~~~~~~lr~L--pC~-H~FH~~CId~WL~~~----~tCPlCR~~  351 (359)
                      ++..++||..... ++.+..-  .|. ..||..|+.  |...    -.||.|+..
T Consensus        14 ~e~~~CiC~~~~~-~~~i~c~~~~C~~~wfH~~Cvg--l~~~p~~~w~C~~C~~~   65 (71)
T d1wesa_          14 NEPTYCLCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD   65 (71)
T ss_dssp             SSCCCSTTCCCCC-SSEECCSCTTCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred             CCCCEEEeCCCCC-CCEEEEECCCCCCcCccCccCC--CCcCCCCcEECcCCccc
Confidence            3345669987643 2322222  244 579999995  3332    269999864

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.33  E-value=0.055  Score=39.70  Aligned_cols=48  Identities=19%  Similarity=0.471  Sum_probs=31.2

Q ss_pred             CccccccCCCccC-CCceEEc-CCCceeChhhHHHhhh-----c---CCCCCcccccc
Q 018193          305 DAECCICLSSYED-GTELHAL-PCNHHFHSTCIVKWLK-----M---NATCPLCKYNI  352 (359)
Q Consensus       305 ~~~C~ICL~~~~~-~~~lr~L-pC~H~FH~~CId~WL~-----~---~~tCPlCR~~I  352 (359)
                      +..|.||.....+ +..+..= .|+..||..|++..+.     .   .=.||.|+...
T Consensus        16 ~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~~   73 (88)
T d1weva_          16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM   73 (88)
T ss_dssp             CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred             cCCccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCchH
Confidence            4579999865433 2233322 3889999999886542     1   22699997644

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.23  E-value=0.18  Score=36.65  Aligned_cols=33  Identities=24%  Similarity=0.746  Sum_probs=26.5

Q ss_pred             CCCCccccccCCCccCCCceEEcC---CCceeChhhHHHh
Q 018193          302 LPEDAECCICLSSYEDGTELHALP---CNHHFHSTCIVKW  338 (359)
Q Consensus       302 ~~~~~~C~ICL~~~~~~~~lr~Lp---C~H~FH~~CId~W  338 (359)
                      ..+|..|.|| +.|..++.   +|   |+-+||..|+.+-
T Consensus        12 v~~D~mC~vC-~v~t~~~l---~pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_          12 VVNDEMCDVC-EVWTAESL---FPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCSCCCTTT-CCCCSSCC---SSCSSSSSCCCHHHHHHH
T ss_pred             CCcCcccccc-Ccccccce---ecceeecchhhHHHHHHh
Confidence            3567889999 77777743   46   7899999999986

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.23  E-value=0.54  Score=33.47  Aligned_cols=48  Identities=21%  Similarity=0.425  Sum_probs=32.2

Q ss_pred             CccccccCCCccCCCceEEc-CCCceeChhhHHH--hh-hc--CCCCCcccccc
Q 018193          305 DAECCICLSSYEDGTELHAL-PCNHHFHSTCIVK--WL-KM--NATCPLCKYNI  352 (359)
Q Consensus       305 ~~~C~ICL~~~~~~~~lr~L-pC~H~FH~~CId~--WL-~~--~~tCPlCR~~I  352 (359)
                      ...|+||...+.+++....= .|+-.||..|+.-  .- ..  +-.||.|+..-
T Consensus        11 ~pv~CiC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~   64 (79)
T d1wepa_          11 VPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF   64 (79)
T ss_dssp             CCCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred             CCeEeECCCccCCCCcEEECCCCCCcEeccccCcchhcCCCCCEEECccCcCCc
Confidence            34677999887766543333 4999999999952  21 11  24799998643

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.98  E-value=0.14  Score=35.91  Aligned_cols=44  Identities=25%  Similarity=0.412  Sum_probs=29.8

Q ss_pred             cccccCCCccCCCceEE-cCCCceeChhhHHHhh----hcCCCCCccccc
Q 018193          307 ECCICLSSYEDGTELHA-LPCNHHFHSTCIVKWL----KMNATCPLCKYN  351 (359)
Q Consensus       307 ~C~ICL~~~~~~~~lr~-LpC~H~FH~~CId~WL----~~~~tCPlCR~~  351 (359)
                      .| ||...+++++.+.. -.|...||..|+..=.    ...-.||.|+..
T Consensus        18 ~C-~C~~~~~~~~~mv~Cd~C~~w~H~~C~g~~~~~~~~~~~~C~~C~~~   66 (72)
T d1weea_          18 DC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL   66 (72)
T ss_dssp             CC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred             Ee-eCCCCcCCCCeEEEeCCCCCcCchhhcCCccccCCCCcEECcCCcCc
Confidence            35 89887777664333 3499999999986422    123479999754

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.06  E-value=0.39  Score=33.72  Aligned_cols=46  Identities=24%  Similarity=0.535  Sum_probs=29.9

Q ss_pred             CccccccCCCccCCCceEEcCCCceeChhhHH----Hh--h---hcCCCCCccccc
Q 018193          305 DAECCICLSSYEDGTELHALPCNHHFHSTCIV----KW--L---KMNATCPLCKYN  351 (359)
Q Consensus       305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId----~W--L---~~~~tCPlCR~~  351 (359)
                      ...| ||-..+.+++.+.-=.|.=.||..|+.    .-  .   ..+-.||.|+..
T Consensus        16 ~~~C-iC~~~~~~~~mi~Cd~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~~~   70 (76)
T d1wema_          16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL   70 (76)
T ss_dssp             CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred             cCEE-ECCCccCCCeEEEECCCCCcCCccccCCCcccccccCCCCCcEECCCCcCc
Confidence            3446 898877655444433489999999983    11  1   224589999754

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.95  E-value=0.47  Score=33.70  Aligned_cols=45  Identities=20%  Similarity=0.525  Sum_probs=29.8

Q ss_pred             ccccccCCCccCCCceEEc---CCCceeChhhHHH----hhh-----cCCCCCcccccc
Q 018193          306 AECCICLSSYEDGTELHAL---PCNHHFHSTCIVK----WLK-----MNATCPLCKYNI  352 (359)
Q Consensus       306 ~~C~ICL~~~~~~~~lr~L---pC~H~FH~~CId~----WL~-----~~~tCPlCR~~I  352 (359)
                      ..| ||-....++..+ ..   .|...||..|+.-    .-.     .+-.||.|+..-
T Consensus        17 ~~C-~C~~~~~~~~~i-~c~c~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C~~~~   73 (78)
T d1wewa_          17 VRC-VCGNSLETDSMI-QCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS   73 (78)
T ss_dssp             CCC-SSCCCCCCSCEE-ECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred             cEe-ECCCccCCCcEE-EEeCCCCCcCCCccccCccccccccccCCCCEEECCCCcCcC
Confidence            345 999887765444 45   3999999999842    111     124799997543