Citrus Sinensis ID: 018556

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350----
MPAIHSSLSFYMKPLFLSNSSLFPRKFTVPKEYLLNPRSLCALSSASNQNGGRSGARSLSPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVESNLWGWTL
cccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHcccccccccccEEEEEEccccEEcccccccHHHHHHHHHHccccccccEEEEEcccccccccccccccccccccccEEcccccHHHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHcccccccHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccEEcccccccccEEEEEEccccccEEEc
cccccHcHHccccccHHHcccccccccccccHHccccHHHHHHHcccccccccccccccccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHccccEEEcccEccHHHHHHccHHHHHHHHcEEccccccEEEEcccccHHHHHHHHHccccccccEEEEEEcccEcccccccccHHHHHEccEEEEccccccHHHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEccccccccHHHccHHHHHHHHHcHHHHHHHcHHHHHHHHHHHHHHHHcccccEEEEcccHHcccHccccEEEEEEEccccccEEEc
mpaihsslsfymkplflsnsslfprkftvpkeyllnprslcalssasnqnggrsgarslspspvsddlqkidvnppkgtrdfppedmrLRNWLFHNFQEVsrlfgfeevdfpvleSEALFIRKAGEEIRDQLYCFEdrgnrrvalrpeltPSLARLVIQkgksvslplkwfavGQCWryermtrgrrrehYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRchsipehlfgkVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLFSLAEkfgysdwiqfdASVVRGLAYYTGIVFEgrkvesnlwgwtl
mpaihsslsfyMKPLFLSNSSLFPRKFTVPKEYLLNPRSLCALSSasnqnggrsgarslspspvsddlqkidvnppkgtrdfppEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIqkgksvslplkwfavgqCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRChsipehlfgkVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGivfegrkvesnlwgwtl
MPAIHSSLSFYMKPLFLSNSSLFPRKFTVPKEYLLNPRSLCALSSASNQNGGRSGARSLSPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWryermtrgrrrEHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVESNLWGWTL
*******LSFYMKPLFLSNSSLFPRKFTVPKEYLLNPRSLC**********************************************RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVESNLWGW**
*********FY*KPLFLSNSSLFP**FTV***********************************************KGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVESNLWGWTL
MPAIHSSLSFYMKPLFLSNSSLFPRKFTVPKEYLLNPRSLCALSS*********************DLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVESNLWGWTL
******SLSFYMKPLFLSNSSLFPRKFTVPKEYLLNPRSLCALSS*********************DLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVESNLWGWTL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPAIHSSLSFYMKPLFLSNSSLFPRKFTVPKEYLLNPRSLCALSSASNQNGGRSGARSLSPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVESNLWGWTL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query354 2.2.26 [Sep-21-2011]
B0SQQ4 437 Histidine--tRNA ligase OS yes no 0.757 0.613 0.402 3e-49
B0SH39 437 Histidine--tRNA ligase OS yes no 0.757 0.613 0.402 3e-49
Q5UXW4 435 Histidine--tRNA ligase OS yes no 0.734 0.597 0.365 1e-46
Q04X87 439 Histidine--tRNA ligase OS yes no 0.754 0.608 0.374 4e-46
Q04WC4 439 Histidine--tRNA ligase OS yes no 0.754 0.608 0.374 4e-46
P62371 439 Histidine--tRNA ligase OS yes no 0.754 0.608 0.370 3e-45
Q8F9Y3 439 Histidine--tRNA ligase OS yes no 0.754 0.608 0.370 3e-45
B1ZUW6 437 Histidine--tRNA ligase OS yes no 0.745 0.604 0.380 3e-44
Q9HLX5 426 Histidine--tRNA ligase OS yes no 0.751 0.624 0.362 1e-43
Q3IMP5 432 Histidine--tRNA ligase OS yes no 0.745 0.611 0.355 8e-43
>sp|B0SQQ4|SYH_LEPBP Histidine--tRNA ligase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=hisS PE=3 SV=1 Back     alignment and function desciption
 Score =  196 bits (497), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 115/286 (40%), Positives = 164/286 (57%), Gaps = 18/286 (6%)

Query: 69  QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI 128
           QK+     KGTRDF PEDMRLRN+LF   ++V R +G+EE D P++ES  L+  K GEEI
Sbjct: 4   QKLTTENYKGTRDFYPEDMRLRNYLFSVMKDVVRSYGYEEYDGPMVESLDLYRAKTGEEI 63

Query: 129 -RDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRR 187
              Q+Y F D+G+R VA+RPE+TP++AR+V +K + +  P++WF++   WRYE+   GR 
Sbjct: 64  VGKQIYNFIDKGDREVAIRPEMTPTVARMVAKKLRELPRPIRWFSIPNLWRYEQPGHGRL 123

Query: 188 REHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVL------ 241
           REH+Q N+D+ GV +  AE E++S         G   +     IS R +L E L      
Sbjct: 124 REHWQLNVDMFGVTSSRAELEILSLACDILFAFGAPKNSFKVTISHRSLLDEFLLDGLKV 183

Query: 242 ---RCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTEL 298
              + H + + L  K  I  D+   L    I ND  S+ +S+    +L    ++ SL ++
Sbjct: 184 SPNQAHEVSKILDKKNKITQDEYVALVTKTIPND--SSAVSKI---DLFLNATVNSLNQI 238

Query: 299 EG---EAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFE 341
            G   E +A +K LF   +  G SD I FD SVVRG  YYTG +FE
Sbjct: 239 PGIKEETLAAIKGLFEDIKTIGLSDIIHFDPSVVRGFDYYTGFIFE 284

Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) (taxid: 456481)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 1
>sp|B0SH39|SYH_LEPBA Histidine--tRNA ligase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=hisS PE=3 SV=1 Back     alignment and function description
>sp|Q5UXW4|SYH_HALMA Histidine--tRNA ligase OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=hisS PE=3 SV=1 Back     alignment and function description
>sp|Q04X87|SYH_LEPBL Histidine--tRNA ligase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=hisS PE=3 SV=1 Back     alignment and function description
>sp|Q04WC4|SYH_LEPBJ Histidine--tRNA ligase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=hisS PE=3 SV=1 Back     alignment and function description
>sp|P62371|SYH_LEPIC Histidine--tRNA ligase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) GN=hisS PE=3 SV=1 Back     alignment and function description
>sp|Q8F9Y3|SYH_LEPIN Histidine--tRNA ligase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) GN=hisS PE=3 SV=1 Back     alignment and function description
>sp|B1ZUW6|SYH_OPITP Histidine--tRNA ligase OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=hisS PE=3 SV=1 Back     alignment and function description
>sp|Q9HLX5|SYH_THEAC Histidine--tRNA ligase OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=hisS PE=1 SV=1 Back     alignment and function description
>sp|Q3IMP5|SYH_NATPD Histidine--tRNA ligase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=hisS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query354
449451054 507 PREDICTED: histidine--tRNA ligase-like [ 0.954 0.666 0.745 1e-148
225440069 554 PREDICTED: histidyl-tRNA synthetase-like 0.971 0.620 0.762 1e-148
449482410 507 PREDICTED: histidine--tRNA ligase-like [ 0.946 0.660 0.746 1e-147
255556918 503 histidyl-tRNA synthetase, putative [Rici 0.974 0.685 0.728 1e-146
297806295 486 histidyl-tRNA synthetase 1 [Arabidopsis 0.940 0.685 0.739 1e-145
356505252 501 PREDICTED: histidyl-tRNA synthetase-like 0.980 0.692 0.709 1e-142
15231337 486 Histidyl-tRNA synthetase 1 [Arabidopsis 0.935 0.681 0.732 1e-141
224068773441 predicted protein [Populus trichocarpa] 0.824 0.662 0.795 1e-136
297741644404 unnamed protein product [Vitis vinifera] 0.742 0.650 0.855 1e-129
297819142442 histidyl-tRNA synthetase 1 [Arabidopsis 0.867 0.694 0.689 1e-127
>gi|449451054|ref|XP_004143277.1| PREDICTED: histidine--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 264/354 (74%), Positives = 308/354 (87%), Gaps = 16/354 (4%)

Query: 5   HSSLSFYMKPLFLSNSSL---FPRKFTVPK-EYLLNPR---SLCALSSA-SNQNGGRSGA 56
             SL+  +KP   S+SSL      +F  PK  + LN     SL A+SSA S  +GG +G 
Sbjct: 12  QPSLNLRLKPFIFSSSSLAFSIILRFPFPKPSFFLNRNFHSSLTAVSSAQSVSDGGTTGG 71

Query: 57  RS--LSPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVL 114
           RS  LSP+P +++LQ+IDVNPPKGTRDFPPEDMRLRNWLF+NF+EVSR++GFEEVD+PVL
Sbjct: 72  RSGALSPAPTTEELQRIDVNPPKGTRDFPPEDMRLRNWLFNNFREVSRVYGFEEVDYPVL 131

Query: 115 ESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVG 174
           ESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKS+SLP+KWFA+G
Sbjct: 132 ESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSLSLPIKWFAIG 191

Query: 175 QCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSR 234
           QCWRYERMTRGRRREHYQWNMDI+GVP VTAEAEL+SSI+TFFK++GITASDVGF++SSR
Sbjct: 192 QCWRYERMTRGRRREHYQWNMDILGVPGVTAEAELLSSIVTFFKKVGITASDVGFKVSSR 251

Query: 235 KVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294
           KVLQ+VL+C+ IP+++FGKVCIIIDKIEK+PLD +K +LK  G+SE AIEELL+VLS+KS
Sbjct: 252 KVLQDVLKCYGIPQNMFGKVCIIIDKIEKIPLDEMKKELKVVGVSEDAIEELLQVLSVKS 311

Query: 295 LTELE------GEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEG 342
           LT+LE      GEA++DLK LFSLAEKFGYSDWIQFDAS+VRGLAYYTGIVFEG
Sbjct: 312 LTKLEEVLGGGGEALSDLKQLFSLAEKFGYSDWIQFDASIVRGLAYYTGIVFEG 365

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225440069|ref|XP_002277086.1| PREDICTED: histidyl-tRNA synthetase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449482410|ref|XP_004156273.1| PREDICTED: histidine--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255556918|ref|XP_002519492.1| histidyl-tRNA synthetase, putative [Ricinus communis] gi|223541355|gb|EEF42906.1| histidyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297806295|ref|XP_002871031.1| histidyl-tRNA synthetase 1 [Arabidopsis lyrata subsp. lyrata] gi|297316868|gb|EFH47290.1| histidyl-tRNA synthetase 1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356505252|ref|XP_003521406.1| PREDICTED: histidyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|15231337|ref|NP_190196.1| Histidyl-tRNA synthetase 1 [Arabidopsis thaliana] gi|3659909|gb|AAC61600.1| histidyl-tRNA synthetase [Arabidopsis thaliana] gi|7798998|emb|CAB90937.1| histidyl-tRNA synthetase [Arabidopsis thaliana] gi|15810389|gb|AAL07082.1| putative histidyl-tRNA synthetase [Arabidopsis thaliana] gi|21436315|gb|AAM51327.1| putative histidyl-tRNA synthetase [Arabidopsis thaliana] gi|332644592|gb|AEE78113.1| Histidyl-tRNA synthetase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224068773|ref|XP_002326196.1| predicted protein [Populus trichocarpa] gi|222833389|gb|EEE71866.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297741644|emb|CBI32776.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297819142|ref|XP_002877454.1| histidyl-tRNA synthetase 1 [Arabidopsis lyrata subsp. lyrata] gi|297323292|gb|EFH53713.1| histidyl-tRNA synthetase 1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query354
TAIR|locus:2075306 486 HRS1 "Histidyl-tRNA synthetase 0.935 0.681 0.704 1.7e-123
TAIR|locus:1009023403263 AT5G03406 [Arabidopsis thalian 0.728 0.980 0.683 9e-93
TIGR_CMR|BA_3376 425 BA_3376 "histidyl-tRNA synthet 0.754 0.628 0.288 1.7e-27
DICTYBASE|DDB_G0274159 481 hisS "histidine-tRNA ligase" [ 0.751 0.553 0.267 2.8e-24
ZFIN|ZDB-GENE-040912-152 520 hars "histidyl-tRNA synthetase 0.757 0.515 0.269 1.1e-23
UNIPROTKB|F1NEE7 501 HARS "Uncharacterized protein" 0.754 0.532 0.279 4.4e-23
UNIPROTKB|F1ND13 504 HARS "Uncharacterized protein" 0.754 0.529 0.279 4.5e-23
TAIR|locus:2075472 883 AT3G02760 [Arabidopsis thalian 0.734 0.294 0.284 8e-23
UNIPROTKB|E2QZ69 509 HARS "Uncharacterized protein" 0.754 0.524 0.280 1e-22
RGD|1310695 508 Hars "histidyl-tRNA synthetase 0.757 0.527 0.278 3.5e-22
TAIR|locus:2075306 HRS1 "Histidyl-tRNA synthetase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
 Identities = 250/355 (70%), Positives = 291/355 (81%)

Query:     1 MPAIH---SSLSFYMKPLFLSN--SSLFP-RKFTVPKEYLLNPRSLCALSSASNQNGGRS 54
             M AIH   + LS   +P+ L +  SS  P R+F++P+      R +CA   A+N  GGRS
Sbjct:     1 MRAIHIVTTRLSSSFRPILLLDLVSSCSPPRQFSIPR------RLICA---AAN-GGGRS 50

Query:    55 GARSLSPSPVSDDL-QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPV 113
             G+  ++P    +D  +KIDVNPPKGTRDFPPEDMRLRNWLF++F+EVSRL+G+EEVD+PV
Sbjct:    51 GS-IVAPLVTEEDFHKKIDVNPPKGTRDFPPEDMRLRNWLFNHFKEVSRLYGYEEVDYPV 109

Query:   114 LESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAV 173
             LE+EALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFA+
Sbjct:   110 LETEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAI 169

Query:   174 GQCWXXXXXXXXXXXEHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISS 233
             GQCW           EHYQWNMDIIGVP VTAEAELISSI+TFFKRIGITASDVGF++SS
Sbjct:   170 GQCWRYERMTRGRRREHYQWNMDIIGVPQVTAEAELISSIVTFFKRIGITASDVGFKVSS 229

Query:   234 RKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIK 293
             RKVLQE+L+ + +PE LFG+VCIIIDKIEK+P+D IK +L   G+SE AIE+LL+VLS+K
Sbjct:   230 RKVLQELLKKYGVPEDLFGRVCIIIDKIEKIPIDEIKKELGFTGISEDAIEQLLQVLSVK 289

Query:   294 SLTELE------GEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEG 342
             SL +LE      GEA+ADLK LFSLAEKFGYS+WIQFDASVVRGLAYYTGIVFEG
Sbjct:   290 SLDDLEDIIGGAGEAIADLKQLFSLAEKFGYSEWIQFDASVVRGLAYYTGIVFEG 344
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA
GO:0004821 "histidine-tRNA ligase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA
GO:0006427 "histidyl-tRNA aminoacylation" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
TAIR|locus:1009023403 AT5G03406 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3376 BA_3376 "histidyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0274159 hisS "histidine-tRNA ligase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040912-152 hars "histidyl-tRNA synthetase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NEE7 HARS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1ND13 HARS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
TAIR|locus:2075472 AT3G02760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E2QZ69 HARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1310695 Hars "histidyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.1.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query354
PLN02530 487 PLN02530, PLN02530, histidine-tRNA ligase 0.0
TIGR00442 397 TIGR00442, hisS, histidyl-tRNA synthetase 2e-76
COG0124 429 COG0124, HisS, Histidyl-tRNA synthetase [Translati 4e-75
cd00773261 cd00773, HisRS-like_core, Class II Histidinyl-tRNA 2e-73
PRK00037 412 PRK00037, hisS, histidyl-tRNA synthetase; Reviewed 3e-70
PRK12420 423 PRK12420, PRK12420, histidyl-tRNA synthetase; Prov 2e-46
TIGR00443313 TIGR00443, hisZ_biosyn_reg, ATP phosphoribosyltran 4e-41
COG3705 390 COG3705, HisZ, ATP phosphoribosyltransferase invol 1e-32
PLN02972 763 PLN02972, PLN02972, Histidyl-tRNA synthetase 7e-32
pfam00587171 pfam00587, tRNA-synt_2b, tRNA synthetase class II 8e-31
PRK12292 391 PRK12292, hisZ, ATP phosphoribosyltransferase regu 4e-30
pfam13393308 pfam13393, tRNA-synt_His, Histidyl-tRNA synthetase 4e-29
CHL00201 430 CHL00201, syh, histidine-tRNA synthetase; Provisio 1e-17
cd00768211 cd00768, class_II_aaRS-like_core, Class II tRNA am 1e-07
PRK12295 373 PRK12295, hisZ, ATP phosphoribosyltransferase regu 2e-06
cd00670235 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro 7e-06
PRK12293281 PRK12293, hisZ, ATP phosphoribosyltransferase regu 5e-04
COG0442 500 COG0442, ProS, Prolyl-tRNA synthetase [Translation 5e-04
TIGR00408 472 TIGR00408, proS_fam_I, prolyl-tRNA synthetase, fam 6e-04
pfam01409245 pfam01409, tRNA-synt_2d, tRNA synthetases class II 0.001
>gnl|CDD|178145 PLN02530, PLN02530, histidine-tRNA ligase Back     alignment and domain information 
 Score =  565 bits (1459), Expect = 0.0
 Identities = 231/346 (66%), Positives = 268/346 (77%), Gaps = 8/346 (2%)

Query: 3   AIHSSLSFYMKPLFLSNSSLFPRKFTVPKEYLLNPRSLCALSSASNQNGGRSGARSLSPS 62
           AI SS +  +    +   SL             +PR     +SA+   GGRSG  +  PS
Sbjct: 2   AIASSAT-RVSASAIRRPSLPLSSRCSFLLSASSPRGGRCAASAA-AGGGRSGGTTAPPS 59

Query: 63  PVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIR 122
              D   KIDVNPPKGTRDFPPEDMRLRNWLF +F+EVSRLFGFEEVD PVLESE L+IR
Sbjct: 60  VQEDGKPKIDVNPPKGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIR 119

Query: 123 KAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERM 182
           KAGEEI DQLY FED+G RRVALRPELTPSLARLV+QKGKS+SLPLKWFA+GQCWRYERM
Sbjct: 120 KAGEEITDQLYNFEDKGGRRVALRPELTPSLARLVLQKGKSLSLPLKWFAIGQCWRYERM 179

Query: 183 TRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLR 242
           TRGRRREHYQWNMDIIGVP V AEAEL+++I+TFFKR+GIT+SDVG ++SSRKVLQ VL+
Sbjct: 180 TRGRRREHYQWNMDIIGVPGVEAEAELLAAIVTFFKRVGITSSDVGIKVSSRKVLQAVLK 239

Query: 243 CHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELE--- 299
            + IPE  F  VC+I+DK+EKLP + I+ +L + G+SE AIE +L VLS+KSL +LE   
Sbjct: 240 SYGIPEESFAPVCVIVDKLEKLPREEIEKELDTLGVSEEAIEGILDVLSLKSLDDLEALL 299

Query: 300 ---GEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEG 342
               EAVADLK LFSLAE +GY DW+ FDASVVRGLAYYTGIVFEG
Sbjct: 300 GADSEAVADLKQLFSLAEAYGYQDWLVFDASVVRGLAYYTGIVFEG 345

Length = 487
>gnl|CDD|213530 TIGR00442, hisS, histidyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|223202 COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238396 cd00773, HisRS-like_core, Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>gnl|CDD|234586 PRK00037, hisS, histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237097 PRK12420, PRK12420, histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|232978 TIGR00443, hisZ_biosyn_reg, ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>gnl|CDD|226228 COG3705, HisZ, ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|215525 PLN02972, PLN02972, Histidyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G, H, P, S and T) Back     alignment and domain information
>gnl|CDD|237043 PRK12292, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>gnl|CDD|222097 pfam13393, tRNA-synt_His, Histidyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|164576 CHL00201, syh, histidine-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>gnl|CDD|183413 PRK12295, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>gnl|CDD|238359 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>gnl|CDD|183411 PRK12293, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>gnl|CDD|223519 COG0442, ProS, Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232961 TIGR00408, proS_fam_I, prolyl-tRNA synthetase, family I Back     alignment and domain information
>gnl|CDD|216483 pfam01409, tRNA-synt_2d, tRNA synthetases class II core domain (F) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 354
PLN02530 487 histidine-tRNA ligase 100.0
KOG1936 518 consensus Histidyl-tRNA synthetase [Translation, r 100.0
COG0124 429 HisS Histidyl-tRNA synthetase [Translation, riboso 100.0
PRK12420 423 histidyl-tRNA synthetase; Provisional 100.0
PRK12292 391 hisZ ATP phosphoribosyltransferase regulatory subu 100.0
PLN02972 763 Histidyl-tRNA synthetase 100.0
PRK12421392 ATP phosphoribosyltransferase regulatory subunit; 100.0
TIGR00443314 hisZ_biosyn_reg ATP phosphoribosyltransferase, reg 100.0
PF13393311 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI 100.0
PRK12295373 hisZ ATP phosphoribosyltransferase regulatory subu 100.0
TIGR00442 397 hisS histidyl-tRNA synthetase. This model finds a 100.0
CHL00201 430 syh histidine-tRNA synthetase; Provisional 100.0
PRK12293281 hisZ ATP phosphoribosyltransferase regulatory subu 100.0
cd00773261 HisRS-like_core Class II Histidinyl-tRNA synthetas 100.0
COG3705 390 HisZ ATP phosphoribosyltransferase involved in his 100.0
PRK00037 412 hisS histidyl-tRNA synthetase; Reviewed 100.0
PRK12294272 hisZ ATP phosphoribosyltransferase regulatory subu 100.0
PRK00413 638 thrS threonyl-tRNA synthetase; Reviewed 99.97
TIGR00418 563 thrS threonyl-tRNA synthetase. This model represen 99.94
PRK12305575 thrS threonyl-tRNA synthetase; Reviewed 99.94
PRK09194 565 prolyl-tRNA synthetase; Provisional 99.93
cd00779255 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla 99.93
TIGR00409 568 proS_fam_II prolyl-tRNA synthetase, family II. Pro 99.92
PRK14799 545 thrS threonyl-tRNA synthetase; Provisional 99.92
KOG1035 1351 consensus eIF-2alpha kinase GCN2 [Translation, rib 99.92
cd00771298 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class 99.92
PRK12444639 threonyl-tRNA synthetase; Reviewed 99.92
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 99.92
cd00772264 ProRS_core Prolyl-tRNA synthetase (ProRS) class II 99.9
PLN02908686 threonyl-tRNA synthetase 99.88
PRK12325 439 prolyl-tRNA synthetase; Provisional 99.87
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 99.86
PF00587173 tRNA-synt_2b: tRNA synthetase class II core domain 99.81
cd00778261 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) 99.8
TIGR02367453 PylS pyrrolysyl-tRNA synthetase. PylS is the archa 99.77
TIGR00408 472 proS_fam_I prolyl-tRNA synthetase, family I. Proly 99.75
PRK08661 477 prolyl-tRNA synthetase; Provisional 99.74
KOG2324 457 consensus Prolyl-tRNA synthetase [Translation, rib 99.68
PRK04172489 pheS phenylalanyl-tRNA synthetase subunit alpha; P 99.67
COG0442 500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 99.66
cd00770297 SerRS_core Seryl-tRNA synthetase (SerRS) class II 99.62
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 99.61
PRK09537417 pylS pyrolysyl-tRNA synthetase; Reviewed 99.61
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 99.57
PLN02837614 threonine-tRNA ligase 99.55
PRK04173456 glycyl-tRNA synthetase; Provisional 99.54
PRK03991 613 threonyl-tRNA synthetase; Validated 99.46
COG0441589 ThrS Threonyl-tRNA synthetase [Translation, riboso 99.37
TIGR00414418 serS seryl-tRNA synthetase. This model represents 99.37
PRK05431425 seryl-tRNA synthetase; Provisional 99.32
KOG1637560 consensus Threonyl-tRNA synthetase [Translation, r 99.24
PRK09350306 poxB regulator PoxA; Provisional 99.14
PRK00960517 seryl-tRNA synthetase; Provisional 99.12
PLN02678448 seryl-tRNA synthetase 99.01
TIGR00415520 serS_MJ seryl-tRNA synthetase, Methanococcus janna 98.98
TIGR00389 551 glyS_dimeric glycyl-tRNA synthetase, dimeric type. 98.93
cd00669269 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl 98.92
PRK14894 539 glycyl-tRNA synthetase; Provisional 98.92
COG0423 558 GRS1 Glycyl-tRNA synthetase (class II) [Translatio 98.91
PLN02320502 seryl-tRNA synthetase 98.82
PF01409247 tRNA-synt_2d: tRNA synthetases class II core domai 98.76
TIGR00468294 pheS phenylalanyl-tRNA synthetase, alpha subunit. 98.66
cd00496218 PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe 98.62
PLN02734 684 glycyl-tRNA synthetase 98.62
cd00777280 AspRS_core Asp tRNA synthetase (aspRS) class II co 98.52
PRK00488339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 98.49
cd00776322 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class 98.42
PLN02853492 Probable phenylalanyl-tRNA synthetase alpha chain 98.38
COG0172429 SerS Seryl-tRNA synthetase [Translation, ribosomal 98.35
TIGR00462304 genX lysyl-tRNA synthetase-like protein GenX. Many 98.25
COG0016335 PheS Phenylalanyl-tRNA synthetase alpha subunit [T 98.22
PF00152335 tRNA-synt_2: tRNA synthetases class II (D, K and N 98.12
TIGR00459 583 aspS_bact aspartyl-tRNA synthetase, bacterial type 98.1
cd00775329 LysRS_core Lys_tRNA synthetase (LysRS) class II co 98.07
PRK06462335 asparagine synthetase A; Reviewed 98.02
PRK00476 588 aspS aspartyl-tRNA synthetase; Validated 97.96
TIGR00458428 aspS_arch aspartyl-tRNA synthetase, archaeal type. 97.94
PLN02903 652 aminoacyl-tRNA ligase 97.92
COG2269322 Truncated, possibly inactive, lysyl-tRNA synthetas 97.89
PRK00484491 lysS lysyl-tRNA synthetase; Reviewed 97.89
PRK03932450 asnC asparaginyl-tRNA synthetase; Validated 97.89
PRK12820 706 bifunctional aspartyl-tRNA synthetase/aspartyl/glu 97.83
PLN02850530 aspartate-tRNA ligase 97.82
PRK12445505 lysyl-tRNA synthetase; Reviewed 97.81
PRK05159437 aspC aspartyl-tRNA synthetase; Provisional 97.81
PRK09616552 pheT phenylalanyl-tRNA synthetase subunit beta; Re 97.77
PTZ00385 659 lysyl-tRNA synthetase; Provisional 97.74
PTZ00417585 lysine-tRNA ligase; Provisional 97.73
COG0173 585 AspS Aspartyl-tRNA synthetase [Translation, riboso 97.72
PLN02502553 lysyl-tRNA synthetase 97.71
TIGR00499496 lysS_bact lysyl-tRNA synthetase, eukaryotic and no 97.64
KOG2509455 consensus Seryl-tRNA synthetase [Translation, ribo 97.63
PTZ00401550 aspartyl-tRNA synthetase; Provisional 97.61
TIGR00457453 asnS asparaginyl-tRNA synthetase. In a multiple se 97.61
TIGR00470 533 sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam 97.51
KOG2298 599 consensus Glycyl-tRNA synthetase and related class 97.48
KOG2784483 consensus Phenylalanyl-tRNA synthetase, beta subun 97.46
KOG2411 628 consensus Aspartyl-tRNA synthetase, mitochondrial 97.41
PTZ00425 586 asparagine-tRNA ligase; Provisional 97.4
cd00769198 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR 97.32
PRK029831094 lysS lysyl-tRNA synthetase; Provisional 97.31
PLN02603565 asparaginyl-tRNA synthetase 97.22
PLN02221 572 asparaginyl-tRNA synthetase 97.14
PLN02788402 phenylalanine-tRNA synthetase 97.12
PLN02532 633 asparagine-tRNA synthetase 97.09
COG0017435 AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl 97.02
KOG4163 551 consensus Prolyl-tRNA synthetase [Translation, rib 96.94
PRK07080317 hypothetical protein; Validated 96.57
COG1190502 LysU Lysyl-tRNA synthetase (class II) [Translation 96.56
TIGR00471551 pheT_arch phenylalanyl-tRNA synthetase, beta subun 96.46
PLN02265597 probable phenylalanyl-tRNA synthetase beta chain 95.71
KOG1885560 consensus Lysyl-tRNA synthetase (class II) [Transl 95.27
KOG0554446 consensus Asparaginyl-tRNA synthetase (mitochondri 94.33
TIGR00472798 pheT_bact phenylalanyl-tRNA synthetase, beta subun 93.87
TIGR00469 460 pheS_mito phenylalanyl-tRNA synthetase, mitochondr 93.77
PRK00629791 pheT phenylalanyl-tRNA synthetase subunit beta; Re 93.56
KOG0556533 consensus Aspartyl-tRNA synthetase [Translation, r 93.49
CHL00192704 syfB phenylalanyl-tRNA synthetase beta chain; Prov 92.89
PRK06253 529 O-phosphoseryl-tRNA synthetase; Reviewed 92.15
COG2024 536 Phenylalanyl-tRNA synthetase alpha subunit (archae 89.08
COG0072650 PheT Phenylalanyl-tRNA synthetase beta subunit [Tr 88.03
>PLN02530 histidine-tRNA ligase Back     alignment and domain information 
Probab=100.00  E-value=7.6e-62  Score=494.19  Aligned_cols=313  Identities=72%  Similarity=1.177  Sum_probs=279.8

Q ss_pred             chhhhcccccccCCCCCCcccCCCCCCCcccccccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccch
Q 018556           38 RSLCALSSASNQNGGRSGARSLSPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESE  117 (354)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~  117 (354)
                      .-.||+++++.  .+++++.+..++..++.+.+++.++|+|++|++|.++..++++++.++++|++|||++|+||+||++
T Consensus        37 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~D~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~  114 (487)
T PLN02530         37 GGRCAASAAAG--GGRSGGTTAPPSVQEDGKPKIDVNPPKGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESE  114 (487)
T ss_pred             ccchhhccccc--cccCCCCCCCCCCccccccccccCCCCCcCcCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchH
Confidence            34566655444  4555555555554467888888999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhhhhccccEEeecCCCCeEeeCCCCcHHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeE
Q 018556          118 ALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDI  197 (354)
Q Consensus       118 ~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei  197 (354)
                      ++|..+.|++..++||+|.|++|+.++||||+|+|+||+++++....+.|+|+||+|+|||+++++.||+|||+|+|+|+
T Consensus       115 el~~~~~g~~~~~~~y~f~D~~g~~l~LRpD~T~~iaR~~~~~~~~~~~P~r~~y~g~vfR~e~~q~gr~REf~Q~giEi  194 (487)
T PLN02530        115 ELYIRKAGEEITDQLYNFEDKGGRRVALRPELTPSLARLVLQKGKSLSLPLKWFAIGQCWRYERMTRGRRREHYQWNMDI  194 (487)
T ss_pred             HHhccccCcccccceEEEECCCCCEEecCCCCcHHHHHHHHhcccccCCCeEEEEEcCEEcCcCCCCCCccceEEcCeeE
Confidence            99988778878899999999999999999999999999999987656789999999999999999999999999999999


Q ss_pred             eccCChhhHHHHHHHHHHHHHHhcCCCCcEEEEeCCHHHHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHHHHcC
Q 018556          198 IGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAG  277 (354)
Q Consensus       198 ~g~~~~~aDaEvi~l~~e~l~~lgl~~~~~~i~lgh~~il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L~~~g  277 (354)
                      ||.+++.+|+|||.++.++|+.+|+++.+++|+|||+++++++|+.++++++.+..++.++|++++.+.+++++.|+..|
T Consensus       195 iG~~~~~aDaEvi~l~~~~l~~lgl~~~~~~i~i~~~~i~~~~l~~~~~~~~~~~~v~~~~d~l~k~~~~~l~~~L~~~~  274 (487)
T PLN02530        195 IGVPGVEAEAELLAAIVTFFKRVGITSSDVGIKVSSRKVLQAVLKSYGIPEESFAPVCVIVDKLEKLPREEIEKELDTLG  274 (487)
T ss_pred             eCCCCcchhHHHHHHHHHHHHHcCCCCCceEEEEcCHHHHHHHHHHcCCchhhHHHHHHHHHhhhhccHHHHHHHHHHcC
Confidence            99999999999999999999999997446999999999999999999999988899999999999999999999999999


Q ss_pred             CCHHHHHHHHHhhcCCChhhHH------HHHHHHHHHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECCCCccc
Q 018556          278 MSEAAIEELLRVLSIKSLTELE------GEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVESNLWG  351 (354)
Q Consensus       278 ~s~~~~~~L~~l~~~~~l~~l~------~~al~~L~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~~~~~~  351 (354)
                      ++.+.++.+++++.+..++.+.      .+++++|++++++|+.+|+++++.|||+++||++||||+|||+|+.++..++
T Consensus       275 ~~~~~~~~l~~l~~~~~~~~l~~~~~~~~~~l~~L~~l~~~l~~~g~~~~i~~Dl~lvrgldYYTGivFe~~~~~~~~~~  354 (487)
T PLN02530        275 VSEEAIEGILDVLSLKSLDDLEALLGADSEAVADLKQLFSLAEAYGYQDWLVFDASVVRGLAYYTGIVFEGFDRAGKLRA  354 (487)
T ss_pred             CCHHHHHHHHHHHhccCHHHHHHHhhhhHHHHHHHHHHHHHHHHcCCCccEEEecccccCccccCceEEEEEecCCCcce
Confidence            9999899888888766544332      4699999999999999999988999999999999999999999986555555


Q ss_pred             c
Q 018556          352 W  352 (354)
Q Consensus       352 ~  352 (354)
                      |
T Consensus       355 I  355 (487)
T PLN02530        355 I  355 (487)
T ss_pred             e
Confidence            4

>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12420 histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A Back     alignment and domain information
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>TIGR00442 hisS histidyl-tRNA synthetase Back     alignment and domain information
>CHL00201 syh histidine-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK09194 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>PRK12325 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes Back     alignment and domain information
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>TIGR02367 PylS pyrrolysyl-tRNA synthetase Back     alignment and domain information
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I Back     alignment and domain information
>PRK08661 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>PRK04173 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK03991 threonyl-tRNA synthetase; Validated Back     alignment and domain information
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00414 serS seryl-tRNA synthetase Back     alignment and domain information
>PRK05431 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09350 poxB regulator PoxA; Provisional Back     alignment and domain information
>PRK00960 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02678 seryl-tRNA synthetase Back     alignment and domain information
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family Back     alignment and domain information
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type Back     alignment and domain information
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>PRK14894 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02320 seryl-tRNA synthetase Back     alignment and domain information
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit Back     alignment and domain information
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain Back     alignment and domain information
>PLN02734 glycyl-tRNA synthetase Back     alignment and domain information
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain Back     alignment and domain information
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX Back     alignment and domain information
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>PRK06462 asparagine synthetase A; Reviewed Back     alignment and domain information
>PRK00476 aspS aspartyl-tRNA synthetase; Validated Back     alignment and domain information
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type Back     alignment and domain information
>PLN02903 aminoacyl-tRNA ligase Back     alignment and domain information
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>PLN02850 aspartate-tRNA ligase Back     alignment and domain information
>PRK12445 lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>PTZ00385 lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00417 lysine-tRNA ligase; Provisional Back     alignment and domain information
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02502 lysyl-tRNA synthetase Back     alignment and domain information
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00401 aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00457 asnS asparaginyl-tRNA synthetase Back     alignment and domain information
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase Back     alignment and domain information
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00425 asparagine-tRNA ligase; Provisional Back     alignment and domain information
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain Back     alignment and domain information
>PRK02983 lysS lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02603 asparaginyl-tRNA synthetase Back     alignment and domain information
>PLN02221 asparaginyl-tRNA synthetase Back     alignment and domain information
>PLN02788 phenylalanine-tRNA synthetase Back     alignment and domain information
>PLN02532 asparagine-tRNA synthetase Back     alignment and domain information
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK07080 hypothetical protein; Validated Back     alignment and domain information
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit Back     alignment and domain information
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain Back     alignment and domain information
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial Back     alignment and domain information
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial Back     alignment and domain information
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional Back     alignment and domain information
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query354
3hri_A 456 Histidyl-Trna Synthetase (Apo) From Trypanosoma Bru 2e-78
3hrk_A 456 Histidyl-Trna Synthetase From Trypanosoma Cruzi (Hi 8e-78
1wu7_A 434 Crystal Structure Of Histidyl-Trna Synthetase From 4e-38
4g85_A 517 Crystal Structure Of Human Hisrs Length = 517 3e-21
4g84_A 464 Crystal Structure Of Human Hisrs Length = 464 1e-20
1qe0_A 420 Crystal Structure Of Apo S. Aureus Histidyl-Trna Sy 1e-16
3od1_A 400 The Crystal Structure Of An Atp Phosphoribosyltrans 6e-16
3net_A 465 Crystal Structure Of Histidyl-Trna Synthetase From 7e-12
1adj_A 421 Histidyl-Trna Synthetase In Complex With Histidine 5e-11
2el9_A 431 Crystal Structure Of E.Coli Histidyl-Trna Synthetas 2e-09
4e51_A 467 Crystal Structure Of A Histidyl-Trna Synthetase His 5e-09
1kmm_A 424 Histidyl-Trna Synthetase Complexed With Histidyl-Ad 7e-09
1htt_A 423 Histidyl-Trna Synthetase Length = 423 7e-09
3rac_A373 Crystal Strucutre Of Histidine--Trna Ligase Subunit 2e-04
>pdb|3HRI|A Chain A, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei Length = 456 Back     alignment and structure 
Iteration: 1

 Score =  289 bits (739), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 138/296 (46%), Positives = 194/296 (65%), Gaps = 6/296 (2%)
Query: 60  SPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEAL 119
           +  P S  +  ++  P +G RDFPPE MRLR +LF  F   +R FGFEE D PVLESE L
Sbjct: 16  TQGPGSMQMNMVETEPVQGCRDFPPETMRLRKYLFDVFHSTARKFGFEEYDSPVLESEEL 75
Query: 120 FIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXX 179
           +IRKAGEEI +Q++ F  +G  RVALRPE+TPSLAR ++ KG+S+ LP KW+++ QCW  
Sbjct: 76  YIRKAGEEITEQMFNFITKGGHRVALRPEMTPSLARQLLAKGRSLLLPAKWYSIPQCWRY 135
Query: 180 XXXXXXXXXEHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQE 239
                    EHYQWNMDIIGV +V++E EL+ +  T  + +G+++ DVG +I+SRK+LQ 
Sbjct: 136 EAITRGRRREHYQWNMDIIGVKSVSSEVELVCAACTAMQSLGLSSKDVGVKINSRKILQT 195
Query: 240 VLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTEL- 298
           V+    +    F  VC+I+DK+EKLP + +   L + G+    ++ +   LS+K++ E+ 
Sbjct: 196 VVEQAGVSADKFAPVCVIVDKMEKLPREEVVAQLAAIGLESNVVDAITSTLSLKTIDEIA 255
Query: 299 -----EGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVESNL 349
                E EAV +L+   +  E +G+ DW+ FDASVVRGLAYYTGIVFEG   + N 
Sbjct: 256 QRIGEEHEAVRELRDFITQIEAYGFGDWVIFDASVVRGLAYYTGIVFEGFDRDGNF 311
>pdb|3HRK|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi (Histidyl-Adenylate Complex) Length = 456 Back     alignment and structure
>pdb|1WU7|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From Thermoplasma Acidophilum Length = 434 Back     alignment and structure
>pdb|4G85|A Chain A, Crystal Structure Of Human Hisrs Length = 517 Back     alignment and structure
>pdb|4G84|A Chain A, Crystal Structure Of Human Hisrs Length = 464 Back     alignment and structure
>pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Histidyl-Trna Synthetase Length = 420 Back     alignment and structure
>pdb|3OD1|A Chain A, The Crystal Structure Of An Atp Phosphoribosyltransferase Regulatory SubunitHISTIDYL-Trna Synthetase From Bacillus Halodurans C Length = 400 Back     alignment and structure
>pdb|3NET|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc Sp. Pcc 7120 Length = 465 Back     alignment and structure
>pdb|1ADJ|A Chain A, Histidyl-Trna Synthetase In Complex With Histidine Length = 421 Back     alignment and structure
>pdb|2EL9|A Chain A, Crystal Structure Of E.Coli Histidyl-Trna Synthetase Complexed With A Histidyl-Adenylate Analogue Length = 431 Back     alignment and structure
>pdb|4E51|A Chain A, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From Burkholderia Thailandensis Bound To Histidine Length = 467 Back     alignment and structure
>pdb|1KMM|A Chain A, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate Length = 424 Back     alignment and structure
>pdb|1HTT|A Chain A, Histidyl-Trna Synthetase Length = 423 Back     alignment and structure
>pdb|3RAC|A Chain A, Crystal Strucutre Of Histidine--Trna Ligase Subunit From Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius Dsm 446 Length = 373 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query354
3lc0_A 456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 1e-117
1wu7_A 434 Histidyl-tRNA synthetase; ligase, structural genom 1e-103
3net_A 465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 1e-101
3od1_A 400 ATP phosphoribosyltransferase regulatory subunit; 3e-90
3rac_A373 Histidine-tRNA ligase; structural genomics, PSI-bi 1e-77
1z7m_A344 ATP phosphoribosyltransferase regulatory subunit; 5e-61
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 3e-53
1usy_A275 ATP phosphoribosyltransferase regulatory subunit; 4e-52
1h4v_B 421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 3e-39
1htt_A 423 Histidyl-tRNA synthetase; complex (tRNA synthetase 8e-39
1qe0_A 420 Histidyl-tRNA synthetase; class II tRNA synthetase 1e-38
4e51_A 467 Histidine--tRNA ligase; seattle structural genomic 4e-37
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 7e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
2odr_D 685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 5e-04
2odr_C 701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 8e-04
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Length = 456 Back     alignment and structure
 Score =  347 bits (892), Expect = e-117
 Identities = 143/279 (51%), Positives = 195/279 (69%), Gaps = 6/279 (2%)

Query: 69  QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI 128
             ++  P +G RDFPPE MR R  LF  F   ++ FGFEE D PVLESE L+IRKAGEEI
Sbjct: 25  NMVETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEI 84

Query: 129 RDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRR 188
            +Q++ F  +G  RVALRPE+TPSLARL++ KG+S+ LP KW+++ QCWRYE +TRGRRR
Sbjct: 85  TEQMFNFITKGGHRVALRPEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAITRGRRR 144

Query: 189 EHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPE 248
           EHYQWNMDI+GV +V+AE EL+ +     + +G+++ DVG +++SRKVLQ V+    +  
Sbjct: 145 EHYQWNMDIVGVKSVSAEVELVCAACWAMRSLGLSSKDVGIKVNSRKVLQTVVEQAGVTS 204

Query: 249 HLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTEL------EGEA 302
             F  VC+I+DK+EK+P + ++  L   G+    ++ +   LS+KS+ E+      E EA
Sbjct: 205 DKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSIDEIAQRVGEEHEA 264

Query: 303 VADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFE 341
           V +L+  F   E +GY DW+ FDASVVRGLAYYTGIVFE
Sbjct: 265 VKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFE 303
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Length = 434 Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Length = 465 Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Length = 400 Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Length = 373 Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Length = 344 Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* Length = 290 Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Length = 275 Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Length = 421 Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Length = 423 Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Length = 420 Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Length = 467 Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Length = 288 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Length = 685 Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Length = 701 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query354
3lc0_A 456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 100.0
3od1_A 400 ATP phosphoribosyltransferase regulatory subunit; 100.0
3net_A 465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 100.0
3rac_A373 Histidine-tRNA ligase; structural genomics, PSI-bi 100.0
1z7m_A344 ATP phosphoribosyltransferase regulatory subunit; 100.0
4g85_A 517 Histidine-tRNA ligase, cytoplasmic; synthetase; 3. 100.0
4g84_A 464 Histidine--tRNA ligase, cytoplasmic; synthetase; 2 100.0
1wu7_A 434 Histidyl-tRNA synthetase; ligase, structural genom 100.0
4e51_A 467 Histidine--tRNA ligase; seattle structural genomic 100.0
1h4v_B 421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 100.0
1htt_A 423 Histidyl-tRNA synthetase; complex (tRNA synthetase 100.0
1usy_A275 ATP phosphoribosyltransferase regulatory subunit; 100.0
1qe0_A 420 Histidyl-tRNA synthetase; class II tRNA synthetase 100.0
2j3l_A 572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 99.97
3a32_A 471 Probable threonyl-tRNA synthetase 1; aeropyrum per 99.96
2i4l_A 458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 99.95
1evl_A401 Threonyl-tRNA synthetase; amino acid recognition, 99.94
1nyr_A645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 99.94
1hc7_A 477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 99.93
1nj8_A 459 Proline-tRNA synthetase, proline--tRNA ligase; cla 99.93
1qf6_A642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 99.91
1nj1_A 501 PROR, proline-tRNA synthetase, proline--tRNA ligas 99.89
3uh0_A 460 Threonyl-tRNA synthetase, mitochondrial; threonine 99.89
3ial_A 518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 99.87
4hvc_A 519 Bifunctional glutamate/proline--tRNA ligase; ligas 99.84
2zt5_A 693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 99.83
1ati_A 505 Glycyl-tRNA synthetase; protein biosynthesis, liga 99.81
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 99.8
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 99.76
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 99.73
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 99.73
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 99.68
3vbb_A522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 99.58
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 99.58
1wle_A501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 99.58
3lss_A484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 99.53
3qne_A485 Seryl-tRNA synthetase, cytoplasmic; amino acid bio 99.52
3err_A536 Fusion protein of microtubule binding domain from 99.5
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 99.36
1g5h_A454 Mitochondrial DNA polymerase accessory subunit; in 99.23
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 99.2
3mf2_A346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 99.14
1n9w_A422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 99.11
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 99.1
3ikl_A459 DNA polymerase subunit gamma-2, mitochondrial; tra 99.09
1eov_A487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 98.93
3a74_A493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 98.8
3l4g_A508 Phenylalanyl-tRNA synthetase alpha chain; aminoacy 98.75
1e1o_A504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 98.63
2du3_A 534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 98.62
3a5y_A345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 98.58
1b7y_A350 Phers, protein (phenylalanyl-tRNA synthetase); enz 98.53
2xgt_A435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 98.41
2du7_A 549 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 98.4
2rhq_A294 Phenylalanyl-tRNA synthetase alpha chain; heterote 98.33
3nem_A438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 98.27
2odr_B 648 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 98.26
2odr_A 665 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 98.25
2odr_D 685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 98.25
2odr_C 701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 98.23
3m4p_A456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 98.09
1l0w_A 580 Aspartyl-tRNA synthetase; space-grown crystal, dim 98.05
1c0a_A 585 Aspartyl tRNA synthetase; protein-RNA complex, lig 98.05
3ica_A213 Phenylalanyl-tRNA synthetase beta chain; APC61692. 98.02
3ig2_A213 Phenylalanyl-tRNA synthetase beta chain; phers, MC 98.02
3bju_A521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 98.0
4ex5_A529 Lysine--tRNA ligase; structural genomics, niaid, n 97.99
3l4g_B589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 97.88
3i7f_A548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 97.86
4ah6_A 617 Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo 97.82
2rhq_B795 Phenylalanyl-tRNA synthetase beta chain; heterotet 97.73
3pco_A327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 97.56
1b7y_B785 Phers, protein (phenylalanyl-tRNA synthetase); enz 97.32
3cmq_A415 Phenylalanyl-tRNA synthetase, mitochondrial; class 97.1
3pco_B795 Phenylalanyl-tRNA synthetase, beta chain; aminoacy 95.98
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Back     alignment and structure
Probab=100.00  E-value=9e-59  Score=466.93  Aligned_cols=288  Identities=50%  Similarity=0.926  Sum_probs=259.0

Q ss_pred             CcccccccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEe
Q 018556           65 SDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVA  144 (354)
Q Consensus        65 ~~~~~~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~  144 (354)
                      .+.+.|+.+++|+|++|++|.++++++++++.++++|++|||++|.||+||+.++|.+++|++..++||+|.|++|+.++
T Consensus        21 ~~~~~m~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~g~~l~  100 (456)
T 3lc0_A           21 SMQKNMVETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKGGHRVA  100 (456)
T ss_dssp             ----CCCCCSCSTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSSSCEEE
T ss_pred             chhhccccccCCCCCcccCHhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCCCCEEe
Confidence            35666788999999999999999999999999999999999999999999999999877788778899999999999999


Q ss_pred             eCCCCcHHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCC
Q 018556          145 LRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITA  224 (354)
Q Consensus       145 LRpD~T~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~  224 (354)
                      ||||+|+++||+++++....++|+|+||+|+|||+++|+.||+|||+|+|+|+||.+++.+|+|||.++.++++.+|+.+
T Consensus       101 LRpd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~lgl~~  180 (456)
T 3lc0_A          101 LRPEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSLGLSS  180 (456)
T ss_dssp             ECSCSHHHHHHHHHHSCTTCCSSEEEEECCEEECCCC-----CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHHTTCCT
T ss_pred             cCCcCHHHHHHHHHhcCcccCCCEEEEEeccEEecCCCCCCCccceEEEEEEEEcCCChHhhHHHHHHHHHHHHHcCCCC
Confidence            99999999999999987666789999999999999999999999999999999999999999999999999999999942


Q ss_pred             CcEEEEeCCHHHHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHHhhcCCChhhHH-----
Q 018556          225 SDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELE-----  299 (354)
Q Consensus       225 ~~~~i~lgh~~il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L~~~g~s~~~~~~L~~l~~~~~l~~l~-----  299 (354)
                      .+++|+|||+++++++|+.+|++++.+..++.++|++++.+++++++.|.+++++++.+++|+++++...++.+.     
T Consensus       181 ~~~~i~in~~~il~~~l~~~g~~~~~~~~v~~~idkl~~~~~~~~~~~L~~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~  260 (456)
T 3lc0_A          181 KDVGIKVNSRKVLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSIDEIAQRVGE  260 (456)
T ss_dssp             TTEEEEEEEHHHHHHHHHHTTCCGGGHHHHHHHHTTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHTCCSHHHHHHHHCT
T ss_pred             CceEEEEcCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCHHHHHHHHHHcCCCHHHHHHHHHHhccCCHHHHHHHHhH
Confidence            379999999999999999999999999999999999999999999999999999999999999988876654432     


Q ss_pred             -HHHHHHHHHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECCCCcccc
Q 018556          300 -GEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVESNLWGW  352 (354)
Q Consensus       300 -~~al~~L~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~~~~~~~  352 (354)
                       .+++++|++++++|+.+|+.+++.|||+++||++||||+|||+|.+++...+|
T Consensus       261 ~~~~~~~L~~l~~~l~~~gi~~~~~~D~~lvRgldYYTG~vFE~~~~~g~~~~I  314 (456)
T 3lc0_A          261 EHEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFEGFDREGKFRAL  314 (456)
T ss_dssp             TCHHHHHHHHHHHHHHHHTCGGGEEECTTCCCSCTTCCSEEEEEEETTSCSSCS
T ss_pred             HHHHHHHHHHHHHHHHHcCCCceEEEecCccCCccccCCeEEEEEECCCCcceE
Confidence             45799999999999999998889999999999999999999999876544444
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Back     alignment and structure
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} Back     alignment and structure
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Back     alignment and structure
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Back     alignment and structure
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Back     alignment and structure
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} Back     alignment and structure
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Back     alignment and structure
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Back     alignment and structure
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Back     alignment and structure
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Back     alignment and structure
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Back     alignment and structure
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Back     alignment and structure
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Back     alignment and structure
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Back     alignment and structure
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Back     alignment and structure
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Back     alignment and structure
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Back     alignment and structure
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Back     alignment and structure
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Back     alignment and structure
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} Back     alignment and structure
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} Back     alignment and structure
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Back     alignment and structure
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Back     alignment and structure
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Back     alignment and structure
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} Back     alignment and structure
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Back     alignment and structure
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Back     alignment and structure
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A Back     alignment and structure
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 354
d1kmma2322 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisR 6e-37
d1qe0a2325 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisR 1e-36
d1h4vb2324 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisR 3e-36
d1usya_275 d.104.1.1 (A:) ATP phosphoribosyltransferase regul 3e-36
d1wu7a2327 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisR 1e-35
d1z7ma1318 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase 2e-28
d1nj8a3268 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) 3e-06
d1hc7a2272 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) 0.003
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Length = 322 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Histidyl-tRNA synthetase (HisRS)
species: Escherichia coli [TaxId: 562]

 Score =  133 bits (335), Expect = 6e-37
 Identities = 61/274 (22%), Positives = 114/274 (41%), Gaps = 9/274 (3%)

Query: 72  DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---I 128
           ++   +G  D+ P +  +   +    + V   +G+ E+  P++E   LF R  GE    +
Sbjct: 1   NIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVV 60

Query: 129 RDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRR 188
             ++Y FEDR    + LRPE T    R  I+ G   +   + + +G  +R+ER  +GR R
Sbjct: 61  EKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYR 120

Query: 189 EHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPE 248
           + +Q   ++ G+     +AELI     +++ +GI+        S   +        ++  
Sbjct: 121 QFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVA 180

Query: 249 HLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKL 308
            L        +K+++     +  +      S+    + L   +      L+ E+      
Sbjct: 181 FL----EQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAG 236

Query: 309 LFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEG 342
           L  L E  G +  +     +VRGL YY   VFE 
Sbjct: 237 LCKLLESAGIAYTVNQ--RLVRGLDYYNRTVFEW 268
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Length = 325 Back     information, alignment and structure
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Length = 324 Back     information, alignment and structure
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} Length = 275 Back     information, alignment and structure
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 327 Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Length = 318 Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Length = 268 Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Length = 272 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query354
d1wu7a2327 Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop 100.0
d1z7ma1318 ATP phosphoribosyltransferase regulatory subunit H 100.0
d1h4vb2324 Histidyl-tRNA synthetase (HisRS) {Thermus thermoph 100.0
d1qe0a2325 Histidyl-tRNA synthetase (HisRS) {Staphylococcus a 100.0
d1kmma2322 Histidyl-tRNA synthetase (HisRS) {Escherichia coli 100.0
d1usya_275 ATP phosphoribosyltransferase regulatory subunit H 100.0
d1nj8a3268 Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc 99.71
d1qf6a4291 Threonyl-tRNA synthetase (ThrRS) {Escherichia coli 99.69
d1nyra4291 Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a 99.66
d1nj1a3265 Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth 99.63
d1b76a2331 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 99.6
d1hc7a2272 Prolyl-tRNA synthetase (ProRS) {Thermus thermophil 99.54
d1atia2394 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 99.01
d1g5ha2290 The aaRS-like accessory subunit of mitochondrial p 98.9
d1seta2311 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 98.74
d1jjca_266 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS 98.42
d1c0aa3346 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 98.33
d1e1oa2342 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 98.15
d1l0wa3356 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 98.14
d1nnha_293 Hypothetical protein PF1951 {Archaeon Pyrococcus f 98.09
d1b8aa2335 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 98.09
d1eova2353 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 98.04
d1n9wa2304 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 97.6
d1jjcb5207 Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, 96.43
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Histidyl-tRNA synthetase (HisRS)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=1.3e-51  Score=395.66  Aligned_cols=277  Identities=35%  Similarity=0.647  Sum_probs=246.8

Q ss_pred             ccCCCCCCCcCCChHHHHHHHHHHHHHHHHHHHCCCeEecCCcccchHHhhhhhhhhhccccEEeecCCCCeEeeCCCCc
Q 018556           71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELT  150 (354)
Q Consensus        71 ~~~~~p~G~~d~~p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~~~~~~~~g~~~~~~l~~f~D~~G~~l~LRpD~T  150 (354)
                      ++.++|+||+|++|+++..++++++.++++|++|||++|+||+||++++|..++|+...+++|+|.|++|+.++||||+|
T Consensus         2 ~~~~~~~G~~D~~p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~f~D~~g~~l~LRpD~T   81 (327)
T d1wu7a2           2 LQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLIPEAT   81 (327)
T ss_dssp             CCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTSCEEEECSCSH
T ss_pred             CCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCeEeECCccchHhhccccCchhHHHHHhhhhcccchhhccccccc
Confidence            56799999999999999999999999999999999999999999999999887788888999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCeEEEEecceeecCCCCCCcccceEEeeeeEeccCChhhHHHHHHHHHHHHHHhcCCCCcEEEE
Q 018556          151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFR  230 (354)
Q Consensus       151 ~~iaR~~a~~~~~~~~PlR~~y~g~VfR~e~~~~Gr~rEf~Q~g~Ei~g~~~~~aDaEvi~l~~e~l~~lgl~~~~~~i~  230 (354)
                      +|+||+++++. ..+.|.|+||+|+|||+++++.|+.|||+|+|+|+||.++..+|+|+|.++.++++.+|+. ..+.|+
T Consensus        82 ~~iar~~~~~~-~~~~p~k~~y~g~VfR~~~~~~g~~re~~Q~G~EiiG~~~~~~D~Eii~l~~~~l~~~~~~-~~~~i~  159 (327)
T d1wu7a2          82 PSTVRMVTSRK-DLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSPEADAEVIALASSILDRLGLQ-DIYEIR  159 (327)
T ss_dssp             HHHHHHHTTCT-TCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTTT-TSEEEE
T ss_pred             chhhhHhhhhh-hccccceeeccCcceeccccccCCcchhhhhhhhhcCCcchHHHHHHHHHHHHHHhccccc-cceeec
Confidence            99999998765 3578999999999999999999999999999999999999999999999999999999995 368899


Q ss_pred             eCCHHHHHHHHHHCCCChhhHhHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHHhhcCC-ChhhHH------HHHH
Q 018556          231 ISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIK-SLTELE------GEAV  303 (354)
Q Consensus       231 lgh~~il~~il~~~gl~~~~~~~v~~~ld~~~~~~~~~i~~~L~~~g~s~~~~~~L~~l~~~~-~l~~l~------~~al  303 (354)
                      +||+++++.+++.++.++  ...+...++++++...+++.+.|...+...+....+..+.... .++.+.      ..++
T Consensus       160 l~~~~i~~~~l~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~  237 (327)
T d1wu7a2         160 INSRKIMEEIIGGMTSSD--PFSVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTRGIDEMARITGKSSEEI  237 (327)
T ss_dssp             EEEHHHHHHHHHTTCSSC--HHHHHHHHHTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHHSCBCHHHHHHHTTCCCHHH
T ss_pred             ccchhhHHHHHHhhhhhH--HHHHHHHHHHHHhhccchhhhhhhhhhhhhHHHhhhhhhcccchhhhHHHhhhchhhhHH
Confidence            999999999999887655  4556778889998888888888988888888777777766543 233322      5678


Q ss_pred             HHHHHHHHHHHHcCCCceEEEecCCCCCCCCccceeEEEEECCCCcccc
Q 018556          304 ADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFEGRKVESNLWGW  352 (354)
Q Consensus       304 ~~L~~l~~~l~~~g~~~~i~~Dlslvr~l~YYTGivFe~~~~~~~~~~~  352 (354)
                      ++|..+.+.++.+|.. .|.||++++|+++||||+||++|++++..++|
T Consensus       238 ~~l~~l~~~l~~~~~~-~i~~D~~~~r~~~YYtGivFe~~~~~~~~~~i  285 (327)
T d1wu7a2         238 ARMAAVEDLLASYGVK-NVRYDFSIVRGLSYYTGIVFEAYDRSGQFRAI  285 (327)
T ss_dssp             HHHHHHHHHHHHTTCC-CCEECTTCCTTTTTCSSEEEEEEETTSSCSCS
T ss_pred             HHHHHHHHHHHhcCCc-ceeEccccCCCCCCcCCeEEEEEecCCCccee
Confidence            8999999999999985 58999999999999999999999987665554
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Back     information, alignment and structure
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure