Citrus Sinensis ID: 018985

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVSLCS
cccccEEEEEEcccccEEEEEEEEEcccccccccccccccccccccccccEEEcccccccEEEEEccccEEEEEEccEEEEEEEEccccccccccccccccccccEEEcccccEEEEccccEEEEEEcccEEEEEcccccccccccccccEEccEEEEccccccEEEEEcccccEEEEEccccEEEEEcccccccccccccccEEccEEEcccccccEEEEEcccccEEEEEccccEEEEEcccccccccccccccccEEEcccccccccEEEEEcccccEEEEEccccEEEEEccccccccccccccccccEEccccccccccEEEEEcccccEEEEEccccEEEcc
cccccEEEEEEcccEEEEEEccccccccccccccccccccEEEccccccccEEEEccccEEEEEEccccEEEEEEEccccEEEEEcccccccccccccccccccccHHHcccEEEEEEcccEEEEEEccEEEEEcccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccHHHHHccccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccHHHHHHccccEEEEEEEcccEEEEEEcccEEEEcc
madryrlfsieelpSHLIFEILTSGRLSAVDLAHLELtsktfggshglypqkFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHssdivetsagnmqitTGRYHTLLisnssvfscgsslcgvlghgpettqcvsftrinfpsaaHVVQVSASENHAAFVlqsgqvftcgdnssfccghrdtnrpifrPRLVEalkgvpckqvtaglnFTGFLTIRGHvhtcgsnthgqlghgdtldrptpksiapleevgsvvqiaagpSYMLAVTGNgvvysfgsgsnfclghgeqhdelqPRAIQTFRRKGIHVVRVSAGDEHVVALdssgyvslcs
MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVrvsagdehvvaldssgyvslcs
MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVSLCS
****YRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQL***************PLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYV****
*****RL**IEELPSHLIFEILTSGRLSAVDLAH***************PQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRF**S*****DIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVSLCS
MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVSLCS
*ADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVSLCS
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MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVSLCS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query348 2.2.26 [Sep-21-2011]
Q15751 4861 Probable E3 ubiquitin-pro yes no 0.637 0.045 0.310 1e-20
Q15034 1050 Probable E3 ubiquitin-pro no no 0.626 0.207 0.288 4e-18
Q9UII4 1024 E3 ISG15--protein ligase no no 0.568 0.193 0.336 8e-18
Q9VR91 4912 Probable E3 ubiquitin-pro yes no 0.632 0.044 0.331 9e-18
Q9FN03 440 Ultraviolet-B receptor UV no no 0.637 0.504 0.310 1e-17
O95714 4834 E3 ubiquitin-protein liga no no 0.635 0.045 0.320 4e-17
Q4U2R1 4836 E3 ubiquitin-protein liga no no 0.635 0.045 0.320 4e-17
Q6PAV2 1057 Probable E3 ubiquitin-pro no no 0.695 0.228 0.305 4e-17
F2Z461 1003 E3 ISG15--protein ligase no no 0.626 0.217 0.306 1e-16
Q5PQN1 1057 Probable E3 ubiquitin-pro no no 0.574 0.189 0.330 9e-15
>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 Back     alignment and function desciption
 Score =  100 bits (250), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 124/235 (52%), Gaps = 13/235 (5%)

Query: 116 ITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS--- 171
           I  G+Y T +IS + SV +CG    G LG G    Q  +  ++ F     + +VS+S   
Sbjct: 408 IEAGQYCTFVISTDGSVRACGKGSYGRLGLGDSNNQS-TLKKLTFEPHRSIKKVSSSKGS 466

Query: 172 ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEA-LKGVPCKQVTAGLNFTGF 230
           + H       G+VF+ GD      GH +++   + P+L++  L+G     V+AG   +  
Sbjct: 467 DGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQKY-PKLIQGPLQGKVVVCVSAGYRHSAA 525

Query: 231 LTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNG-V 289
           +T  G ++T G    G+LGHGD+  R  P  +  +  VG   +++ G S+ +A++ +G  
Sbjct: 526 VTEDGELYTWGEGDFGRLGHGDSNSRNIPTLVKDISNVG---EVSCGSSHTIALSKDGRT 582

Query: 290 VYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYV 344
           V+SFG G N  LGHG+ +   +P+ I+    +G+ + +V AG +  +AL S+G V
Sbjct: 583 VWSFGGGDNGKLGHGDTNRVYKPKVIEAL--QGMFIRKVCAGSQSSLALTSTGQV 635
Involved in membrane trafficking via some guanine nucleotide exchange factor (GEF) activity and its ability to bind clathrin. Acts as a GEF for Arf and Rab, by exchanging bound GDP for free GTP. Binds phosphatidylinositol 4,5-bisphosphate, which is required for GEF activity. May also act as a E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 Back     alignment and function description
>sp|Q9UII4|HERC5_HUMAN E3 ISG15--protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=2 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function description
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description
>sp|F2Z461|HERC6_MOUSE E3 ISG15--protein ligase Herc6 OS=Mus musculus GN=Herc6 PE=2 SV=1 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query348
255575340 497 Ran GTPase binding protein, putative [Ri 0.928 0.649 0.816 1e-164
224114984 478 predicted protein [Populus trichocarpa] 0.959 0.698 0.811 1e-161
224128193 492 predicted protein [Populus trichocarpa] 0.922 0.652 0.808 1e-161
147820281 511 hypothetical protein VITISV_023540 [Viti 0.821 0.559 0.796 1e-159
225461391 492 PREDICTED: probable E3 ubiquitin-protein 0.821 0.581 0.796 1e-158
356549747 485 PREDICTED: probable E3 ubiquitin-protein 0.979 0.703 0.790 1e-155
255646519 485 unknown [Glycine max] 0.979 0.703 0.787 1e-155
356544020 485 PREDICTED: probable E3 ubiquitin-protein 0.979 0.703 0.781 1e-153
297830122 488 regulator of chromosome condensation fam 0.974 0.694 0.732 1e-147
18400769 488 regulator of chromosome condensation rep 0.977 0.696 0.738 1e-147
>gi|255575340|ref|XP_002528573.1| Ran GTPase binding protein, putative [Ricinus communis] gi|223532017|gb|EEF33828.1| Ran GTPase binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 281/344 (81%), Positives = 306/344 (88%)

Query: 1   MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLA 60
           MAD+YRL SI+ELPSHLI EIL +GRLSA DL  LELTSKTFGGSHGLYP KF+SLVD A
Sbjct: 1   MADKYRLVSIDELPSHLILEILMTGRLSATDLVCLELTSKTFGGSHGLYPHKFKSLVDFA 60

Query: 61  ASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGR 120
           A QLCA HS+Y GM  N Q ELL+RC GNWKRVLRFL +VE SS +VETSAGNMQITTGR
Sbjct: 61  AFQLCASHSVYTGMLWNAQKELLDRCGGNWKRVLRFLLAVEESSGMVETSAGNMQITTGR 120

Query: 121 YHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQ 180
           YHTLLISNSSV+SCGSSLCGVLGHGPETTQCVSF+RI FPS A VVQVSAS NHAA++L+
Sbjct: 121 YHTLLISNSSVYSCGSSLCGVLGHGPETTQCVSFSRITFPSLARVVQVSASHNHAAYILE 180

Query: 181 SGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTC 240
           SG+VFTCGDNSSFCCGH+DT+RPIFRPR VEALKGVPCKQV AGLNFT FLT  GHV++C
Sbjct: 181 SGEVFTCGDNSSFCCGHQDTSRPIFRPRFVEALKGVPCKQVAAGLNFTVFLTRTGHVYSC 240

Query: 241 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFC 300
           G+NTHGQLGHGDTLDRPTPK I   E +GSV QIAAGPSY+LAVT +GVVYSFGSGSNFC
Sbjct: 241 GTNTHGQLGHGDTLDRPTPKIIESFEGIGSVAQIAAGPSYVLAVTDSGVVYSFGSGSNFC 300

Query: 301 LGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYV 344
           LGHGEQH+E  PRAIQTFRRK +HVVRVSAGDEHVVALDSSG+V
Sbjct: 301 LGHGEQHNEFHPRAIQTFRRKNLHVVRVSAGDEHVVALDSSGFV 344

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224114984|ref|XP_002316910.1| predicted protein [Populus trichocarpa] gi|222859975|gb|EEE97522.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224128193|ref|XP_002329104.1| predicted protein [Populus trichocarpa] gi|222869773|gb|EEF06904.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147820281|emb|CAN60415.1| hypothetical protein VITISV_023540 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225461391|ref|XP_002284809.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2 [Vitis vinifera] gi|302143037|emb|CBI20332.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356549747|ref|XP_003543252.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|255646519|gb|ACU23737.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356544020|ref|XP_003540454.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine max] Back     alignment and taxonomy information
>gi|297830122|ref|XP_002882943.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata] gi|297328783|gb|EFH59202.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18400769|ref|NP_566512.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] gi|42572455|ref|NP_974323.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] gi|7021728|gb|AAF35409.1| unknown protein [Arabidopsis thaliana] gi|15795108|dbj|BAB02372.1| unnamed protein product [Arabidopsis thaliana] gi|23297250|gb|AAN12924.1| unknown protein [Arabidopsis thaliana] gi|332642152|gb|AEE75673.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] gi|332642153|gb|AEE75674.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query348
TAIR|locus:2090136 488 AT3G15430 "AT3G15430" [Arabido 0.988 0.704 0.738 2.8e-137
TAIR|locus:2092190 532 AT3G26100 [Arabidopsis thalian 0.939 0.614 0.336 6.5e-35
RGD|1306366 1203 Herc1 "HECT and RLD domain con 0.637 0.184 0.310 6.4e-23
UNIPROTKB|J9NWD8 4118 HERC1 "Uncharacterized protein 0.646 0.054 0.310 1.3e-22
UNIPROTKB|F1MNS0 4857 HERC1 "Uncharacterized protein 0.637 0.045 0.310 3.4e-22
UNIPROTKB|F1S098 4859 HERC1 "Uncharacterized protein 0.637 0.045 0.310 3.4e-22
UNIPROTKB|Q15751 4861 HERC1 "Probable E3 ubiquitin-p 0.637 0.045 0.310 3.4e-22
UNIPROTKB|E2QYQ5 4863 HERC1 "Uncharacterized protein 0.637 0.045 0.305 2.4e-21
UNIPROTKB|E1C4H7 4863 HERC1 "Uncharacterized protein 0.637 0.045 0.310 3.4e-22
UNIPROTKB|F1NCH3 1048 HERC4 "Uncharacterized protein 0.646 0.214 0.306 9e-21
TAIR|locus:2090136 AT3G15430 "AT3G15430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1344 (478.2 bits), Expect = 2.8e-137, P = 2.8e-137
 Identities = 254/344 (73%), Positives = 282/344 (81%)

Query:     1 MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLA 60
             MADR  L S E+LPSHLI E+LTSGRLSAVDL  LELTSK FGGSHG YP KFRSL D A
Sbjct:     1 MADRNCLISFEDLPSHLILEVLTSGRLSAVDLLSLELTSKVFGGSHGFYPLKFRSLADYA 60

Query:    61 ASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGR 120
             ASQLC++H +Y GM    Q EL   C GNWKR+  FLQSVE SSD+VETS G MQI TG+
Sbjct:    61 ASQLCSMHPVYVGMGLTTQKELFANCEGNWKRLFSFLQSVEQSSDMVETSQGKMQIATGK 120

Query:   121 YHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQ 180
             YHTLLI+NS V+SCG SL GVL HG ETTQCV+FT I FP  A V QVSA++NH+AFVLQ
Sbjct:   121 YHTLLINNSKVYSCGVSLSGVLAHGSETTQCVAFTPIEFPFPAQVAQVSATQNHSAFVLQ 180

Query:   181 SGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTC 240
             SGQV TCGDNSS CCGH DT+RPIFRP+LVEALKG PCKQV AGL+FT FL+  GH +TC
Sbjct:   181 SGQVLTCGDNSSHCCGHLDTSRPIFRPKLVEALKGTPCKQVAAGLHFTVFLSREGHAYTC 240

Query:   241 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFC 300
             GSNTHGQLGHGDTLDRP PK +  L+ +G VVQIAAGPSY+LAVT +G VYSFGSGSNFC
Sbjct:   241 GSNTHGQLGHGDTLDRPVPKVVEFLKTIGPVVQIAAGPSYVLAVTQDGSVYSFGSGSNFC 300

Query:   301 LGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYV 344
             LGHGEQ DELQPR IQ F+RKGIH++RVSAGDEH VALDS+G V
Sbjct:   301 LGHGEQQDELQPRVIQAFKRKGIHILRVSAGDEHAVALDSNGRV 344
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0008536 "Ran GTPase binding" evidence=ISS
GO:0006486 "protein glycosylation" evidence=RCA
TAIR|locus:2092190 AT3G26100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1306366 Herc1 "HECT and RLD domain containing E3 ubiquitin protein ligase family member 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|J9NWD8 HERC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MNS0 HERC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S098 HERC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q15751 HERC1 "Probable E3 ubiquitin-protein ligase HERC1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYQ5 HERC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1C4H7 HERC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NCH3 HERC4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-20
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-14
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 7e-12
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-10
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 5e-09
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 5e-08
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 6e-07
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-05
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 3e-04
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 7e-04
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 0.002
pfam0064648 pfam00646, F-box, F-box domain 0.002
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 0.004
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 0.004
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score = 91.1 bits (226), Expect = 3e-20
 Identities = 74/340 (21%), Positives = 128/340 (37%), Gaps = 34/340 (10%)

Query: 3   DRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELT-SKTFGGSHGLYPQKFRSLVDLAA 61
           D   L                +  +   D   LE T  K  GGS      +    V LA 
Sbjct: 132 DDGALGRDIHKDICDQ-----NNDIIDFDDYELESTPFKVPGGSSAKSHLRV---VKLAC 183

Query: 62  SQ--LCALHS---IYA-GMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQ 115
                  L +   +Y+ G  R  ++   +  N   K  ++F         IV       Q
Sbjct: 184 GWEISVILTADGRVYSWGTFRCGELGQGSYKNSQ-KTSIQFTPLKVPKKAIV-------Q 235

Query: 116 ITTGRYHTLLISN-SSVFSCGSSLCGVLGHGP-ETTQCVSFTRINFPSAAHVVQVSASEN 173
           +  G  H + ++N   V+  GS+  G LG    E  + V      F +  ++  V+  ++
Sbjct: 236 LAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPF-AIRNIKYVACGKD 294

Query: 174 HAAFVLQSGQVFTCGDNSSFCCGHRDTNRP---IFRPRLVEALKGVPCKQVTAGLNFTGF 230
           H+  + + G+++  G N     G            +P   + L GV    ++AG + +  
Sbjct: 295 HSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLI 354

Query: 231 LTIRGHVHTCGSNTHGQLGHGD--TLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNG 288
           L   G ++  G    GQLG  +  T+D  TP     L     + Q+A G  + +A T +G
Sbjct: 355 LRKDGTLYAFGRGDRGQLGIQEEITIDVSTPT---KLSVAIKLEQVACGTHHNIARTDDG 411

Query: 289 VVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRV 328
            VYS+G G +  LG+G +  ++    +        H + +
Sbjct: 412 SVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGHNIIL 451

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 348
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184 476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427 443 consensus Uncharacterized conserved protein, conta 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.95
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.94
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.9
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.9
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.38
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.35
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.25
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.23
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.22
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.12
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 95.86
KOG3669 705 consensus Uncharacterized conserved protein, conta 95.51
KOG3669 705 consensus Uncharacterized conserved protein, conta 95.14
KOG0315311 consensus G-protein beta subunit-like protein (con 93.71
PHA03098534 kelch-like protein; Provisional 90.04
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 89.52
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 89.47
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 88.14
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 86.5
smart0025641 FBOX A Receptor for Ubiquitination Targets. 85.67
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 85.47
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 84.82
PF07569 219 Hira: TUP1-like enhancer of split; InterPro: IPR01 84.63
KOG0315 311 consensus G-protein beta subunit-like protein (con 83.36
KOG0646 476 consensus WD40 repeat protein [General function pr 83.0
PHA02713557 hypothetical protein; Provisional 82.21
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=8.5e-41  Score=307.16  Aligned_cols=275  Identities=24%  Similarity=0.322  Sum_probs=214.1

Q ss_pred             ccceeeeeecccccceeeecc-----cCCcccccccccccccccccccC------CCCcEEEEecCCeEEEE-ECCeEEE
Q 018985           66 ALHSIYAGMSRNVQIELLNRC-----NGNWKRVLRFLQSVEHSSDIVET------SAGNMQITTGRYHTLLI-SNSSVFS  133 (348)
Q Consensus        66 ~~~~~~~~~g~n~~g~l~~~~-----~~~~~~~~~~~~~~~~~p~~~~~------~~~i~~ia~G~~h~~~l-~~G~vy~  133 (348)
                      .++.+|+ ||.|.+|+|+...     ..+-+....-....+..|..++.      ..++++++||.+++++| ++|+||+
T Consensus       121 ~Dg~lys-wG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~  199 (476)
T COG5184         121 HDGNLYS-WGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYS  199 (476)
T ss_pred             CCCCEEE-eccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEE
Confidence            4678999 9999999998633     11111111112224455667766      44799999999999999 9999999


Q ss_pred             EeCCCCCcccCCCCCc---eeeceEEeecCCCCcEEEEEecCCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEe
Q 018985          134 CGSSLCGVLGHGPETT---QCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLV  210 (348)
Q Consensus       134 wG~n~~gqlG~~~~~~---~~~~~~~v~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v  210 (348)
                      ||.+..+.++.+....   ....++|+.++ ...|+++++|.+|.++|+++|+||+||+|.+||||....++ ...+.++
T Consensus       200 ~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~-~~~~~lv  277 (476)
T COG5184         200 WGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSER-LKLVVLV  277 (476)
T ss_pred             ecCccccccccccccccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhh-ccccccc
Confidence            9999888888774333   12446666666 56899999999999999999999999999999999887764 3333333


Q ss_pred             cc-cCCCceeEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCC----CCCceEecCCCCCCCEEEEEecCceeEEEE
Q 018985          211 EA-LKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD----RPTPKSIAPLEEVGSVVQIAAGPSYMLAVT  285 (348)
Q Consensus       211 ~~-~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~----~~~p~~v~~~~~~~~v~~Ia~G~~~s~~lt  285 (348)
                      .. +.-..|++|+||.+|++||+++|+||+||.|.+||||.++...    ...|.....+.. ..|..|++|..|+++|.
T Consensus       278 ~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~-~~i~~is~ge~H~l~L~  356 (476)
T COG5184         278 GDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSG-VTICSISAGESHSLILR  356 (476)
T ss_pred             CChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCC-ceEEEEecCcceEEEEe
Confidence            22 2223479999999999999999999999999999999983322    233444444433 46899999999999999


Q ss_pred             cCCcEEEEeCCCCCccCCCC--CCCeeeeEEeeccccCCCcEEEEEecCceeEEEecCCcEEEeC
Q 018985          286 GNGVVYSFGSGSNFCLGHGE--QHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVSLCS  348 (348)
Q Consensus       286 ~~g~vy~wG~n~~gqLG~~~--~~~~~~P~~v~~~~~~~~~v~~i~~G~~ht~al~~~G~v~~wG  348 (348)
                      .+|.||+||+++.+|||..+  +.....|+++...    .++.+|+||..|+++.+.+|.||+||
T Consensus       357 ~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~----~~~~~v~~gt~~~~~~t~~gsvy~wG  417 (476)
T COG5184         357 KDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVA----IKLEQVACGTHHNIARTDDGSVYSWG  417 (476)
T ss_pred             cCceEEEecCCccccccCcccceeecCCccccccc----cceEEEEecCccceeeccCCceEEec
Confidence            99999999999999999988  4555566666532    26999999999999999999999998

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 7e-19
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 7e-19
4dnv_A 370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 8e-19
4dnu_A 372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 3e-18
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 7e-18
3kci_A 389 The Third Rld Domain Of Herc2 Length = 389 3e-05
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 1e-08
3mvd_K 423 Crystal Structure Of The Chromatin Factor Rcc1 In C 5e-07
1i2m_B 402 Ran-Rcc1-So4 Complex Length = 402 4e-08
1i2m_B 402 Ran-Rcc1-So4 Complex Length = 402 9e-07
1a12_A 413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 5e-08
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 1e-06
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 6e-07
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure 
Iteration: 1

 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 115/229 (50%), Gaps = 7/229 (3%)
Query: 116 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
           I+ G  H++ L+S   V S G    G LGHG +     S T+++      +V V+   +H
Sbjct: 9   ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 67
Query: 175 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 233
                QSG +V++ G       GH +++  +F P  ++AL G+  KQ+  G +    +T+
Sbjct: 68  TVAYSQSGMEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Query: 234 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
            G V + G N +GQLG GDT D   P+ I   E +  +  +AAG  +  AVT +G +Y +
Sbjct: 127 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYGW 185
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSG 342
           G G    LG G++ D L P  + +    G  +  V+ G  H +++  SG
Sbjct: 186 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTISVSYSG 232
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-63
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 5e-54
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-45
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-40
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-18
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-63
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 7e-59
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 7e-56
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 5e-55
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-48
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 2e-53
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-51
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 1e-50
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 2e-43
3of7_A473 Regulator of chromosome condensation; beta-propell 4e-50
3of7_A 473 Regulator of chromosome condensation; beta-propell 1e-49
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-45
3of7_A 473 Regulator of chromosome condensation; beta-propell 3e-41
3of7_A473 Regulator of chromosome condensation; beta-propell 2e-30
3mvd_K423 Regulator of chromosome condensation; protein-DNA 7e-50
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-48
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 3e-47
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 2e-45
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 1e-42
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-06
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-20
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-19
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-16
3qhy_B 282 Beta-lactamase inhibitory protein II; enyzme-inhib 4e-13
3qhy_B 282 Beta-lactamase inhibitory protein II; enyzme-inhib 4e-13
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
 Score =  206 bits (526), Expect = 2e-63
 Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 7/232 (3%)

Query: 115 QITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN 173
            I+ G  H++ + S   V S G    G LGHG +     S T+++      +V V+   +
Sbjct: 20  IISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGAD 78

Query: 174 HAAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLT 232
           H     QSG +V++ G       GH   +  +F P  ++AL G+  KQ+  G +    +T
Sbjct: 79  HTVAYSQSGMEVYSWGWGDFGRLGH-GNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVT 137

Query: 233 IRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 292
           + G V + G N +GQLG GDT D   P+ I   E +  +  +AAG  +  AVT +G +Y 
Sbjct: 138 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYG 196

Query: 293 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYV 344
           +G G    LG G++ D L P  + +    G  +  V+ G  H +++  SG +
Sbjct: 197 WGWGRYGNLGLGDRTDRLVPERVTST--GGEKMSMVACGWRHTISVSYSGAL 246
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query348
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A 473 Regulator of chromosome condensation; beta-propell 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
2ovr_B 445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 97.64
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.45
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.61
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 96.43
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.32
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 94.89
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 93.82
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 93.07
1p22_A 435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 91.36
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 90.15
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 89.52
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 88.15
4g56_B357 MGC81050 protein; protein arginine methyltransfera 87.18
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 85.35
1suu_A312 DNA gyrase subunit A; topoisomerase,DNA gyrase, be 80.21
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
Probab=100.00  E-value=4.4e-56  Score=425.15  Aligned_cols=304  Identities=23%  Similarity=0.259  Sum_probs=253.0

Q ss_pred             hCCCCchhhhhhccccccccCCCCCCCcccccchhhHHHHHh--ccc-eeeeeecccccceeeecccCCccccccccccc
Q 018985           24 SGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLC--ALH-SIYAGMSRNVQIELLNRCNGNWKRVLRFLQSV  100 (348)
Q Consensus        24 ~~~l~~~~l~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~g~n~~g~l~~~~~~~~~~~~~~~~~~  100 (348)
                      .|||+.++.... .+|+.++.   +...++.++.....+.++  .++ .+|. ||.|..|||+.....   .        
T Consensus        45 ~GqLG~g~~~~~-~~P~~v~~---l~~~~i~~va~G~~ht~al~~~gg~v~~-wG~n~~GqLG~g~~~---~--------  108 (406)
T 4d9s_A           45 DGQLGHGDAEDR-PSPTQLSA---LDGHQIVSVTCGADHTVAYSQSGMEVYS-WGWGDFGRLGHGNSS---D--------  108 (406)
T ss_dssp             TSTTCSSSCCCE-EEEEECGG---GTTSCEEEEEECSSEEEEEETTTTEEEE-EECCGGGTTCSSSCC---C--------
T ss_pred             CCCCCCCCcccC-cCCEEecc---cCCCCEEEEEeCcceEEEEECCCCEEEE-EcCCCCcCCCCCCCC---c--------
Confidence            366766654432 34544431   222344444444444432  344 8999 999999999853221   1        


Q ss_pred             cccccccc--CCCCcEEEEecCCeEEEE-ECCeEEEEeCCCCCcccCCCCCceeeceEEeecCCCCcEEEEEecCCeeEE
Q 018985          101 EHSSDIVE--TSAGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAF  177 (348)
Q Consensus       101 ~~~p~~~~--~~~~i~~ia~G~~h~~~l-~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~v~~~~~~~i~~ia~G~~h~~~  177 (348)
                      ...|.+++  ...+|++|+||..|+++| ++|+||+||.|.+||||.+.... ...|+++..+...+|++|+||.+|+++
T Consensus       109 ~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~-~~~p~~v~~~~~~~i~~va~G~~hs~a  187 (406)
T 4d9s_A          109 LFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTED-SLVPQKIQAFEGIRIKMVAAGAEHTAA  187 (406)
T ss_dssp             EEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCC-EEEEEECGGGTTCCEEEEEECSSEEEE
T ss_pred             cccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCC-cccceEecccCCCcEEEEecCCCeEEE
Confidence            11233333  344799999999999999 99999999999999999998766 566777777667799999999999999


Q ss_pred             EEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCCceeEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCCC
Q 018985          178 VLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRP  257 (348)
Q Consensus       178 lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqLG~~~~~~~~  257 (348)
                      |+++|+||+||.|.+||||.++... ...|+++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.++.....
T Consensus       188 lt~~G~v~~wG~n~~GqlG~g~~~~-~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~  266 (406)
T 4d9s_A          188 VTEDGDLYGWGWGRYGNLGLGDRTD-RLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHL  266 (406)
T ss_dssp             EETTSCEEEEECCTTSTTCSSSSCC-EEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEE
T ss_pred             EeCCCCEEEeeCCCCCCCCCCCCCC-cCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCcc
Confidence            9999999999999999999988764 788999998888899999999999999999999999999999999999988889


Q ss_pred             CceEecCCCCCCCEEEEEecCceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecCceeEE
Q 018985          258 TPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVA  337 (348)
Q Consensus       258 ~p~~v~~~~~~~~v~~Ia~G~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~~ht~a  337 (348)
                      .|++++.+.. .+|++|+||.+|++||+++|+||+||.|.+||||.++..+...|++|..+.  ..+|++|+||.+|++|
T Consensus       267 ~p~~v~~~~~-~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~--~~~v~~va~G~~hs~a  343 (406)
T 4d9s_A          267 IPHKLEALSN-SFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPD--DQKVVQVSCGWRHTLA  343 (406)
T ss_dssp             EEEECGGGTT-SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGG--GCCEEEEEECSSEEEE
T ss_pred             ccEEecccCC-CCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccC--CCcEEEEEeCCCeEEE
Confidence            9999998765 579999999999999999999999999999999999999999999998764  3479999999999999


Q ss_pred             EecCCcEEEeC
Q 018985          338 LDSSGYVSLCS  348 (348)
Q Consensus       338 l~~~G~v~~wG  348 (348)
                      |+++|+||+||
T Consensus       344 lt~~G~v~~wG  354 (406)
T 4d9s_A          344 VTERNNVFAWG  354 (406)
T ss_dssp             EETTSCEEEEE
T ss_pred             EeCCCCEEEec
Confidence            99999999998
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 348
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-21
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-20
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-16
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 3e-06
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 3e-04
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.9 bits (229), Expect = 1e-21
 Identities = 44/200 (22%), Positives = 75/200 (37%), Gaps = 5/200 (2%)

Query: 148 TTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRP 207
             +CV                         +   G V+  G ++    G   T       
Sbjct: 205 VPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQ 264

Query: 208 RLVEALKGVPC-KQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGD-TLDRPTPKSIAPL 265
            L             + G + T  +   G  ++ G   +G+LG G+   ++  P  I+ L
Sbjct: 265 NLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL 324

Query: 266 EEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHV 325
               +V  +A G S   AVT +G V+++G G+N+ LG G+  D   P  +   + +   V
Sbjct: 325 P---AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVV 381

Query: 326 VRVSAGDEHVVALDSSGYVS 345
           + VS+G +H V L      S
Sbjct: 382 LSVSSGGQHTVLLVKDKEQS 401
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query348
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_ 401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 99.97
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 96.46
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 96.23
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 95.1
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 92.93
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 92.03
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 90.83
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 87.24
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 80.27
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-46  Score=351.63  Aligned_cols=263  Identities=25%  Similarity=0.277  Sum_probs=199.7

Q ss_pred             ccceeeeeecccccceeeecccCCcccccccccccccccccccCCCCcEEEEecCCeEEEE-ECCeEEEEeCCCCCcccC
Q 018985           66 ALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGH  144 (348)
Q Consensus        66 ~~~~~~~~~g~n~~g~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~ia~G~~h~~~l-~~G~vy~wG~n~~gqlG~  144 (348)
                      .++++|. ||.|..|||+.....          .....|.+++...+|++|+||..|++|| ++|+||+||.|.+||||+
T Consensus        13 ~~G~vy~-wG~n~~GqLG~g~~~----------~~~~~P~~v~~~~~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~   81 (401)
T d1a12a_          13 EPGLVLT-LGQGDVGQLGLGENV----------MERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGR   81 (401)
T ss_dssp             CCBEEEE-EEECTTSTTCSCTTC----------CEEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCS
T ss_pred             CCCEEEE-EeCCCCCCCCCCCCC----------ceeccCEEeCCCCCeEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCc
Confidence            4689999 999999999953111          1134577788888999999999999999 999999999999999999


Q ss_pred             CCCCceeeceEEeecCCCCcEEEEEecCCeeEEEEcCCcEEEEECCCCCcccCCCCCCceeecEEecccCCC--------
Q 018985          145 GPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGV--------  216 (348)
Q Consensus       145 ~~~~~~~~~~~~v~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~--------  216 (348)
                      +.... ...|.+..+....+|++|+||..|+++++++|+||+||.+..++.+..........+..+......        
T Consensus        82 g~~~~-~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g  160 (401)
T d1a12a_          82 DTSVE-GSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASG  160 (401)
T ss_dssp             CCCST-TGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEEC
T ss_pred             ccccc-cccccccccccccceeeecccccceeeccccccceeccccccccccccccCCccccceeeeeccCCceeEEEec
Confidence            87665 345566666667799999999999999999999999998876665543322112222222222222        


Q ss_pred             ------------------------------------------------------------ceeEEEecCCeEEEEEcCCc
Q 018985          217 ------------------------------------------------------------PCKQVTAGLNFTGFLTIRGH  236 (348)
Q Consensus       217 ------------------------------------------------------------~i~~i~~G~~hs~~lt~~G~  236 (348)
                                                                                  +|.+|+||..|+++|+++|+
T Consensus       161 ~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~  240 (401)
T d1a12a_         161 NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH  240 (401)
T ss_dssp             SSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCC
T ss_pred             ccceeeeecCCcccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEecCCeEEEEecCCe
Confidence                                                                        35556666666666665555


Q ss_pred             EEEEeCCCCCCcCCCCCC-------------------------------------------------------CCCCceE
Q 018985          237 VHTCGSNTHGQLGHGDTL-------------------------------------------------------DRPTPKS  261 (348)
Q Consensus       237 v~~wG~n~~gqLG~~~~~-------------------------------------------------------~~~~p~~  261 (348)
                      ||+||.|.+|++|.....                                                       ....|++
T Consensus       241 v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~  320 (401)
T d1a12a_         241 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTL  320 (401)
T ss_dssp             EEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEE
T ss_pred             EeeecccceecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCcccccccCCEE
Confidence            555555555555533211                                                       1123555


Q ss_pred             ecCCCCCCCEEEEEecCceeEEEEcCCcEEEEeCCCCCccCCCCCCCeeeeEEeeccccCCCcEEEEEecCceeEEEecC
Q 018985          262 IAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSS  341 (348)
Q Consensus       262 v~~~~~~~~v~~Ia~G~~~s~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~~~v~~i~~G~~ht~al~~~  341 (348)
                      |+.+   .+|++|+||.+|++||+++|+||+||.|.+||||+++..+...|++|.....++.+|++|+||.+||++|++|
T Consensus       321 i~~~---~~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~~~~~~v~~v~~G~~hs~~l~~d  397 (401)
T d1a12a_         321 ISRL---PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKD  397 (401)
T ss_dssp             CCSS---SSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEE
T ss_pred             cCCC---CCeEEEEeeCCEEEEEeCCCeEEEEecCCCCCCCCCCCCCEecCEEeeccCCCCCEEEEEEEccceEEEEEEC
Confidence            5544   4799999999999999999999999999999999999999999999987766777899999999999999999


Q ss_pred             Cc
Q 018985          342 GY  343 (348)
Q Consensus       342 G~  343 (348)
                      |+
T Consensus       398 ~~  399 (401)
T d1a12a_         398 KE  399 (401)
T ss_dssp             CS
T ss_pred             Cc
Confidence            86
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure