Citrus Sinensis ID: 019339

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
MSDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK
ccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHcccHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccc
cccHHHHHHHHHHHHHHHHHHcHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcHHHHcHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccc
MSDLKSRFIEVYGVLKQellndpafefdhdsrQWVDRMldynvpggklnrglsvvDSYRLLkegkeltddeFFLSSALGWCIEWLQAYFLVLDdimdgshtrrgqpcwfrvpkvgmiaaNDGVLLRNHISRILKnhfrdkpyyvDLLDLFNEVEFQTASGQMIDLITTiegekdlskyslplhRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQvqddfldcfgspevigkvgtdiedykCSWLVVKALELCNEEQKKLVhenygkvdpACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK
MSDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYnvpggklnrglsvVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKlvhenygkvdpACVAKVKELYKTLDLEGAFVEYEKESYEKLTKsieahptkevQAVLKSFLAKIYKRQK
MSDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK
******RFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAH*TKEVQAVLKSFLAKIY****
***LKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQ*
MSDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK
*SDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQ*
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MSDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query342 2.2.26 [Sep-21-2011]
P49351342 Farnesyl pyrophosphate sy N/A no 1.0 1.0 0.824 1e-171
O64905341 Farnesyl pyrophosphate sy N/A no 0.991 0.994 0.824 1e-168
P49350343 Farnesyl pyrophosphate sy N/A no 0.994 0.991 0.821 1e-168
Q7XYS9346 Farnesyl diphosphate synt N/A no 0.991 0.979 0.820 1e-168
O24241342 Farnesyl pyrophosphate sy N/A no 0.994 0.994 0.815 1e-168
P49352342 Farnesyl pyrophosphate sy N/A no 1.0 1.0 0.809 1e-167
O24242342 Farnesyl pyrophosphate sy N/A no 0.994 0.994 0.800 1e-167
Q43315342 Farnesyl pyrophosphate sy yes no 1.0 1.0 0.795 1e-164
Q09152384 Farnesyl pyrophosphate sy no no 0.997 0.888 0.782 1e-162
Q7XYT0342 Farnesyl diphosphate synt N/A no 0.991 0.991 0.791 1e-161
>sp|P49351|FPPS1_LUPAL Farnesyl pyrophosphate synthase 1 OS=Lupinus albus GN=FPS1 PE=2 SV=1 Back     alignment and function desciption
 Score =  600 bits (1546), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 282/342 (82%), Positives = 309/342 (90%)

Query: 1   MSDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRL 60
           M+DL+S F+ VY VLK ELL+DPAFEF  DSRQW+DRMLDYNVPGGKLNRGLSV+DSYRL
Sbjct: 1   MADLRSTFLNVYSVLKSELLHDPAFEFSPDSRQWLDRMLDYNVPGGKLNRGLSVIDSYRL 60

Query: 61  LKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAAN 120
           LK+G EL DDE FL+SALGWCIEWLQAYFLVLDDIMD SHTRRGQPCWFRVPKVGMIAAN
Sbjct: 61  LKDGHELNDDEIFLASALGWCIEWLQAYFLVLDDIMDNSHTRRGQPCWFRVPKVGMIAAN 120

Query: 121 DGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSL 180
           DGVLLRNHI RILK HFR KPYY DLLDLFNEVEFQTASGQMIDLITT+EGEKDLSKY+L
Sbjct: 121 DGVLLRNHIPRILKKHFRGKPYYADLLDLFNEVEFQTASGQMIDLITTLEGEKDLSKYTL 180

Query: 181 PLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGS 240
            LHRRIVQYKTAYYSFYLPVACALLM GENLD H++VK+ILV MG YFQVQDD+LDCFG+
Sbjct: 181 SLHRRIVQYKTAYYSFYLPVACALLMVGENLDNHIDVKNILVDMGTYFQVQDDYLDCFGA 240

Query: 241 PEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLE 300
           PE IGK+GTDIED+KCSWLVVKALEL N+EQKK++++NYGK DPA VAKVK LY  L+L+
Sbjct: 241 PETIGKIGTDIEDFKCSWLVVKALELSNDEQKKVLYDNYGKPDPANVAKVKALYDELNLQ 300

Query: 301 GAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 342
           G F EYE +SYEKL  SIEAHP+K VQA+LKSFL KIYKRQK
Sbjct: 301 GVFTEYESKSYEKLVTSIEAHPSKAVQALLKSFLGKIYKRQK 342
Catalyzes the sequential condensation of isopentenyl pyrophosphate with the allylic pyrophosphates, dimethylallyl pyrophosphate, and then with the resultant geranylpyrophosphate to the ultimate product farnesyl pyrophosphate.
Lupinus albus (taxid: 3870)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 1
>sp|O64905|FPPS_HELAN Farnesyl pyrophosphate synthase OS=Helianthus annuus GN=FPS1 PE=2 SV=1 Back     alignment and function description
>sp|P49350|FPPS_ARTAN Farnesyl pyrophosphate synthase OS=Artemisia annua GN=FPS1 PE=2 SV=1 Back     alignment and function description
>sp|Q7XYS9|FPPS1_ARTSI Farnesyl diphosphate synthase 1 OS=Artemisia spiciformis GN=FDS-1 PE=1 SV=1 Back     alignment and function description
>sp|O24241|FPPS1_PARAR Farnesyl pyrophosphate synthase 1 OS=Parthenium argentatum GN=FPS1 PE=2 SV=1 Back     alignment and function description
>sp|P49352|FPPS2_LUPAL Farnesyl pyrophosphate synthase 2 OS=Lupinus albus GN=FPS2 PE=2 SV=1 Back     alignment and function description
>sp|O24242|FPPS2_PARAR Farnesyl pyrophosphate synthase 2 OS=Parthenium argentatum GN=FPS2 PE=2 SV=1 Back     alignment and function description
>sp|Q43315|FPPS2_ARATH Farnesyl pyrophosphate synthase 2 OS=Arabidopsis thaliana GN=FPS2 PE=2 SV=1 Back     alignment and function description
>sp|Q09152|FPPS1_ARATH Farnesyl pyrophosphate synthase 1, mitochondrial OS=Arabidopsis thaliana GN=FPS1 PE=2 SV=2 Back     alignment and function description
>sp|Q7XYT0|FPPS2_ARTSI Farnesyl diphosphate synthase 2 OS=Artemisia spiciformis GN=FDS-2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query342
14573639341 farnesyldiphosphate synthase [x Citrofor 0.997 1.0 0.982 0.0
68165941342 farnesyl diphosphate synthase [Panax gin 1.0 1.0 0.845 1e-173
55710092342 farnesyl diphosphate synthase [Centella 1.0 1.0 0.845 1e-173
118486658342 unknown [Populus trichocarpa] 1.0 1.0 0.842 1e-173
300119973342 farnesyl diphosphate synthase [Panax qui 1.0 1.0 0.842 1e-173
224089549342 predicted protein [Populus trichocarpa] 1.0 1.0 0.839 1e-172
225462001341 PREDICTED: farnesyl pyrophosphate syntha 0.997 1.0 0.847 1e-172
66735446343 farnesyl pyrophosphate synthase [Panax n 1.0 0.997 0.839 1e-171
300431229342 farnesyl diphosphate synthase [Aralia el 1.0 1.0 0.839 1e-171
22676905342 farnesyl diphosphate synthase [Hevea bra 1.0 1.0 0.839 1e-171
>gi|14573639|gb|AAK68152.1| farnesyldiphosphate synthase [x Citrofortunella microcarpa] Back     alignment and taxonomy information
 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/342 (98%), Positives = 338/342 (98%), Gaps = 1/342 (0%)

Query: 1   MSDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRL 60
           MSDLKSRFI+VYGVLKQELL DPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRL
Sbjct: 1   MSDLKSRFIDVYGVLKQELLYDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRL 60

Query: 61  LKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAAN 120
           LKEGK  TDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAAN
Sbjct: 61  LKEGKT-TDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAAN 119

Query: 121 DGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSL 180
           DGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSL
Sbjct: 120 DGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSL 179

Query: 181 PLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGS 240
           PLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGS
Sbjct: 180 PLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGS 239

Query: 241 PEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLE 300
           PEVIGKVGTDIEDYKCSWLVVKALELCNEEQK +VHENYGKVDPACVAKVKELYKTLDLE
Sbjct: 240 PEVIGKVGTDIEDYKCSWLVVKALELCNEEQKNVVHENYGKVDPACVAKVKELYKTLDLE 299

Query: 301 GAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 342
           GAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK
Sbjct: 300 GAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 341

Source: x Citrofortunella microcarpa

Species: x Citrofortunella microcarpa

Genus: x Citrofortunella

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|68165941|gb|AAY87903.1| farnesyl diphosphate synthase [Panax ginseng] Back     alignment and taxonomy information
>gi|55710092|gb|AAV58896.1| farnesyl diphosphate synthase [Centella asiatica] Back     alignment and taxonomy information
>gi|118486658|gb|ABK95166.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|300119973|gb|ADJ68004.1| farnesyl diphosphate synthase [Panax quinquefolius] Back     alignment and taxonomy information
>gi|224089549|ref|XP_002308751.1| predicted protein [Populus trichocarpa] gi|222854727|gb|EEE92274.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225462001|ref|XP_002272641.1| PREDICTED: farnesyl pyrophosphate synthase 1 [Vitis vinifera] gi|296089967|emb|CBI39786.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|66735446|gb|AAY53905.1| farnesyl pyrophosphate synthase [Panax notoginseng] Back     alignment and taxonomy information
>gi|300431229|gb|ADK12004.1| farnesyl diphosphate synthase [Aralia elata] Back     alignment and taxonomy information
>gi|22676905|gb|AAM98379.1| farnesyl diphosphate synthase [Hevea brasiliensis] gi|34013692|gb|AAQ56011.1| farnesyl diphosphate synthase [Hevea brasiliensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query342
TAIR|locus:2130654342 FPS2 "farnesyl diphosphate syn 1.0 1.0 0.795 2.9e-151
TAIR|locus:2160947384 FPS1 "farnesyl diphosphate syn 0.997 0.888 0.782 3e-149
SGD|S000003703352 ERG20 "Farnesyl pyrophosphate 0.988 0.960 0.505 6.7e-88
CGD|CAL0002030351 ERG20 [Candida albicans (taxid 1.0 0.974 0.504 6.9e-86
UNIPROTKB|Q59TD9351 ERG20 "Likely farnesyl diphosp 1.0 0.974 0.504 6.9e-86
DICTYBASE|DDB_G0278735382 fps "farnesyl diphosphate synt 0.967 0.866 0.479 1.3e-82
ZFIN|ZDB-GENE-050506-78359 fdps "farnesyl diphosphate syn 0.991 0.944 0.476 1.4e-80
UNIPROTKB|P08836367 FDPS "Farnesyl pyrophosphate s 0.891 0.831 0.506 1.8e-80
RGD|68953353 Fdps "farnesyl diphosphate syn 0.970 0.940 0.464 1.1e-78
MGI|MGI:104888353 Fdps "farnesyl diphosphate syn 0.970 0.940 0.464 4.8e-78
TAIR|locus:2130654 FPS2 "farnesyl diphosphate synthase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1476 (524.6 bits), Expect = 2.9e-151, P = 2.9e-151
 Identities = 272/342 (79%), Positives = 307/342 (89%)

Query:     1 MSDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRL 60
             M+DLKS F++VY VLK +LL DP+FEF H+SRQW++RMLDYNV GGKLNRGLSVVDSY+L
Sbjct:     1 MADLKSTFLDVYSVLKSDLLQDPSFEFTHESRQWLERMLDYNVRGGKLNRGLSVVDSYKL 60

Query:    61 LKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAAN 120
             LK+G++LT+ E FLS ALGWCIEWLQAYFLVLDDIMD S TRRGQPCWFR PKVGMIA N
Sbjct:    61 LKQGQDLTEKETFLSCALGWCIEWLQAYFLVLDDIMDNSVTRRGQPCWFRKPKVGMIAIN 120

Query:   121 DGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSL 180
             DG+LLRNHI RILK HFR+ PYYVDL+DLFNEVEFQTA GQMIDLITT +GEKDLSKYSL
Sbjct:   121 DGILLRNHIHRILKKHFREMPYYVDLVDLFNEVEFQTACGQMIDLITTFDGEKDLSKYSL 180

Query:   181 PLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGS 240
              +HRRIV+YKTAYYSFYLPVACALLMAGENL+ H +VK +LV MGIYFQVQDD+LDCF  
Sbjct:   181 QIHRRIVEYKTAYYSFYLPVACALLMAGENLENHTDVKTVLVDMGIYFQVQDDYLDCFAD 240

Query:   241 PEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLE 300
             PE +GK+GTDIED+KCSWLVVKALE C+EEQ K+++ENYGK +P+ VAKVK LYK LDLE
Sbjct:   241 PETLGKIGTDIEDFKCSWLVVKALERCSEEQTKILYENYGKAEPSNVAKVKALYKELDLE 300

Query:   301 GAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 342
             GAF+EYEKESYEKLTK IEAH +K +QAVLKSFLAKIYKRQK
Sbjct:   301 GAFMEYEKESYEKLTKLIEAHQSKAIQAVLKSFLAKIYKRQK 342
GO:0005737 "cytoplasm" evidence=ISM
GO:0045337 "farnesyl diphosphate biosynthetic process" evidence=IGI;ISS;IDA
GO:0005829 "cytosol" evidence=IDA
GO:0006084 "acetyl-CoA metabolic process" evidence=RCA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA
GO:0004161 "dimethylallyltranstransferase activity" evidence=IGI;IDA
GO:0004337 "geranyltranstransferase activity" evidence=IGI;IDA
TAIR|locus:2160947 FPS1 "farnesyl diphosphate synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
SGD|S000003703 ERG20 "Farnesyl pyrophosphate synthetase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0002030 ERG20 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59TD9 ERG20 "Likely farnesyl diphosphate synthetase" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278735 fps "farnesyl diphosphate synthase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050506-78 fdps "farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P08836 FDPS "Farnesyl pyrophosphate synthase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|68953 Fdps "farnesyl diphosphate synthase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:104888 Fdps "farnesyl diphosphate synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XYT0FPPS2_ARTSI2, ., 5, ., 1, ., 1, 00.79110.99120.9912N/Ano
P49350FPPS_ARTAN2, ., 5, ., 1, ., 10.82110.99410.9912N/Ano
P05369FPPS_RAT2, ., 5, ., 1, ., 10.46130.97070.9405yesno
P49349FPPS_KLULA2, ., 5, ., 1, ., 10.50141.00.9799yesno
Q09152FPPS1_ARATH2, ., 5, ., 1, ., 10.78290.99700.8880nono
P08836FPPS_CHICK2, ., 5, ., 1, ., 10.49680.91520.8528yesno
O24241FPPS1_PARAR2, ., 5, ., 1, ., 10.81520.99410.9941N/Ano
Q8WMY2FPPS_BOVIN2, ., 5, ., 1, ., 10.44570.98530.9546yesno
Q7XYS8CHRDS_ARTSI2, ., 5, ., 1, ., 6, 90.67150.99410.8629N/Ano
Q7XYS9FPPS1_ARTSI2, ., 5, ., 1, ., 1, 00.82050.99120.9797N/Ano
O24242FPPS2_PARAR2, ., 5, ., 1, ., 10.80050.99410.9941N/Ano
P08524FPPS_YEAST2, ., 5, ., 1, ., 10.50580.98830.9602yesno
Q43315FPPS2_ARATH2, ., 5, ., 1, ., 10.79531.01.0yesno
P49351FPPS1_LUPAL2, ., 5, ., 1, ., 10.82451.01.0N/Ano
O64905FPPS_HELAN2, ., 5, ., 1, ., 10.82400.99120.9941N/Ano
P49353FPPS_MAIZE2, ., 5, ., 1, ., 10.72940.99410.9714N/Ano
P49352FPPS2_LUPAL2, ., 5, ., 1, ., 10.80991.01.0N/Ano
P0C565CPPAS_TANCI2, ., 5, ., 1, ., 6, 70.69200.99410.8607N/Ano
Q920E5FPPS_MOUSE2, ., 5, ., 1, ., 10.46420.97070.9405yesno
O14230FPPS_SCHPO2, ., 5, ., 1, ., 10.44760.99120.9769yesno
Q9NH03FPS_DICDI2, ., 5, ., 1, ., 10.48400.95900.8586yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.5.1.100.994
4th Layer2.5.1.10.994
3rd Layer2.5.10.998

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00060040
SubName- Full=Putative uncharacterized protein; (342 aa)
(Populus trichocarpa)
Predicted Functional Partners:
IDI
SubName- Full=Putative chloroplast isopentenyl diphosphate isomerase; EC=5.3.3.2; Flags- Fragme [...] (234 aa)
   • •• 0.968
grail3.0106013901
diphosphomevalonate decarboxylase (EC-4.1.1.33) (417 aa)
   • •• 0.946
grail3.0090014401
diphosphomevalonate decarboxylase (EC-4.1.1.33) (417 aa)
   • •• 0.946
gw1.V.3639.1
hypothetical protein (287 aa)
     •• 0.919
fgenesh4_pm.C_LG_IX000553
hypothetical protein (234 aa)
     •• 0.911
gw1.I.925.1
hypothetical protein (242 aa)
     •• 0.908
estExt_fgenesh4_pg.C_LG_IV1345
hypothetical protein (413 aa)
   • •• 0.907
estExt_fgenesh4_pm.C_LG_IX0217
hypothetical protein (413 aa)
   • •• 0.907
estExt_fgenesh4_pg.C_280076
dimethylallyltranstransferase (321 aa)
     •• 0.904
grail3.0001025501
hypothetical protein (314 aa)
     •• 0.903

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
pfam00348260 pfam00348, polyprenyl_synt, Polyprenyl synthetase 4e-92
cd00685259 cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphat 4e-74
cd00867236 cd00867, Trans_IPPS, Trans-Isoprenyl Diphosphate S 2e-51
COG0142322 COG0142, IspA, Geranylgeranyl pyrophosphate syntha 5e-45
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 2e-31
PRK10581299 PRK10581, PRK10581, geranyltranstransferase; Provi 2e-06
CHL00151323 CHL00151, preA, prenyl transferase; Reviewed 1e-04
TIGR02749322 TIGR02749, prenyl_cyano, solanesyl diphosphate syn 0.004
>gnl|CDD|215873 pfam00348, polyprenyl_synt, Polyprenyl synthetase Back     alignment and domain information 
 Score =  275 bits (705), Expect = 4e-92
 Identities = 95/274 (34%), Positives = 135/274 (49%), Gaps = 16/274 (5%)

Query: 34  WVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLD 93
            +  ML Y + GGK  R L VV + R L         E      L   IE +    LV D
Sbjct: 1   LLAAMLYYLLAGGKRIRPLLVVLAARAL-------GVEPETLLYLACAIEMIHTASLVHD 53

Query: 94  DIMDGSHTRRGQP-CWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNE 152
           D+MD S  RRG+P C  +  + G I A D +L R      L  H R +P Y+ + +L N 
Sbjct: 54  DLMDNSDLRRGKPTCHKKFGEAGAILAGDALLSRAFQLLALLGHVRPEPKYILISELANA 113

Query: 153 VEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLD 212
           V  Q   GQ++DL T  +        +L  + RIV YKTA   FY  V    ++AG + +
Sbjct: 114 VGAQGEVGQLMDLETEGK------DITLEEYLRIVSYKTAAL-FYASVQLGAIVAGADEE 166

Query: 213 KHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNEEQ 271
              ++ D    +G+ FQ+QDD LD  G  E +GK VGTD+++ K +  V+ ALE   EEQ
Sbjct: 167 DEKDLYDFGRDLGLAFQIQDDILDLTGDTEELGKPVGTDLQEGKSTLPVLLALEGAREEQ 226

Query: 272 KKLVHENYGKVDPACVAKVKELYKTLDLEGAFVE 305
           +KL+ E Y +      A+   L K L+    ++E
Sbjct: 227 RKLLREAYEQKLSEAAAQGVALTKALEALAEYIE 260

Length = 260
>gnl|CDD|173833 cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>gnl|CDD|173836 cd00867, Trans_IPPS, Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>gnl|CDD|223220 COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|182567 PRK10581, PRK10581, geranyltranstransferase; Provisional Back     alignment and domain information
>gnl|CDD|164542 CHL00151, preA, prenyl transferase; Reviewed Back     alignment and domain information
>gnl|CDD|131796 TIGR02749, prenyl_cyano, solanesyl diphosphate synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 342
PRK10888323 octaprenyl diphosphate synthase; Provisional 100.0
TIGR02748319 GerC3_HepT heptaprenyl diphosphate synthase compon 100.0
COG0142322 IspA Geranylgeranyl pyrophosphate synthase [Coenzy 100.0
PLN02890422 geranyl diphosphate synthase 100.0
TIGR02749322 prenyl_cyano solanesyl diphosphate synthase. Membe 100.0
PLN02857416 octaprenyl-diphosphate synthase 100.0
CHL00151323 preA prenyl transferase; Reviewed 100.0
PRK10581299 geranyltranstransferase; Provisional 100.0
cd00685259 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase 100.0
PF00348260 polyprenyl_synt: Polyprenyl synthetase; InterPro: 100.0
KOG0711347 consensus Polyprenyl synthetase [Coenzyme transpor 100.0
KOG0776384 consensus Geranylgeranyl pyrophosphate synthase/Po 100.0
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 100.0
KOG0777322 consensus Geranylgeranyl pyrophosphate synthase/Po 100.0
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.88
cd00683265 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase 96.53
PLN02632334 phytoene synthase 95.7
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 95.4
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 95.06
PF07307212 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HE 95.02
TIGR01559336 squal_synth farnesyl-diphosphate farnesyltransfera 94.88
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 93.95
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 91.29
COG1562288 ERG9 Phytoene/squalene synthetase [Lipid metabolis 85.7
>PRK10888 octaprenyl diphosphate synthase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.4e-64  Score=477.78  Aligned_cols=292  Identities=20%  Similarity=0.244  Sum_probs=262.0

Q ss_pred             HHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcCcccccc
Q 019339           32 RQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFR  110 (342)
Q Consensus        32 ~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI~D~~~~RRg~p~~~~  110 (342)
                      .+.+.++..|.+ .+|||+||.+++++++++ |+   +++   .++++|+++|++|+||||||||||+|++|||+||+|.
T Consensus        29 ~~~l~~~~~~~~~~~GKrlRp~l~ll~~~~~-g~---~~~---~~~~~A~avEllH~asLiHDDI~D~s~~RRG~pt~~~  101 (323)
T PRK10888         29 VQLINQLGYYIISGGGKRIRPMIAVLAARAV-GY---QGN---AHVTIAALIEFIHTATLLHDDVVDESDMRRGKATANA  101 (323)
T ss_pred             chhHHHHHHHHHhCCCchHHHHHHHHHHHHc-CC---ChH---HHHHHHHHHHHHHHHHHHHcccccCCcccCCCCCHHH
Confidence            355888999998 999999999999999998 44   222   3568999999999999999999999999999999999


Q ss_pred             cccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcc
Q 019339          111 VPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYK  190 (342)
Q Consensus       111 ~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~K  190 (342)
                      +||+. ++++.|+++++.++..+.+..     ..++++.+++++..++.||.+|+.+..+.     ++++++|++|+.+|
T Consensus       102 ~~G~~-~Ail~GD~L~~~a~~~l~~~~-----~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~-----~~s~~~y~~~i~~K  170 (323)
T PRK10888        102 AFGNA-ASVLVGDFIYTRAFQMMTSLG-----SLKVLEVMSEAVNVIAEGEVLQLMNVNDP-----DITEENYMRVIYSK  170 (323)
T ss_pred             HhCcc-HHHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHHHHHHHHhccCC-----CCCHHHHHHHHHHH
Confidence            99987 455555556678888887641     36788899999999999999999875432     57999999999999


Q ss_pred             hhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-cccchhhccchHHHHHHHhhccH
Q 019339          191 TAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNE  269 (342)
Q Consensus       191 Tg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK-~~~Dl~~gk~Tlp~l~al~~~~~  269 (342)
                      ||+| |++||.+|++++|++++.++.+++||+++|+||||+||++||+++++.+|| .|+|+++||+|||++++++..++
T Consensus       171 Ta~l-f~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~Tlp~l~al~~~~~  249 (323)
T PRK10888        171 TARL-FEAAAQCSGILAGCTPEQEKGLQDYGRYLGTAFQLIDDLLDYSADGETLGKNVGDDLNEGKPTLPLLHAMHHGTP  249 (323)
T ss_pred             HHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHhhCCCchhhhhcCCchHHHHHHHHhCCH
Confidence            9999 999999999999999999999999999999999999999999999999999 89999999999999999999888


Q ss_pred             HHHHHHHHHhCCCC-hHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccC
Q 019339          270 EQKKLVHENYGKVD-PACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK  342 (342)
Q Consensus       270 ~~~~~l~~~~~~~~-~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~L~~l~~~~~~R~~  342 (342)
                      +.++.+..++++.+ +++++++.+++.++|+++++++++++|.++|++.|+.+|+++.++.|..+++++++|++
T Consensus       250 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~e~~~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~~  323 (323)
T PRK10888        250 EQAAMIRTAIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPDTPWREALIGLAHIAVQRDR  323 (323)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCcC
Confidence            88888988886653 56789999999999999999999999999999999999999999999999999999975

>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II Back     alignment and domain information
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>PLN02890 geranyl diphosphate synthase Back     alignment and domain information
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase Back     alignment and domain information
>PLN02857 octaprenyl-diphosphate synthase Back     alignment and domain information
>CHL00151 preA prenyl transferase; Reviewed Back     alignment and domain information
>PRK10581 geranyltranstransferase; Provisional Back     alignment and domain information
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms Back     alignment and domain information
>KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism] Back     alignment and domain information
>KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism] Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism] Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head Back     alignment and domain information
>PLN02632 phytoene synthase Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2 Back     alignment and domain information
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
1fps_A348 Crystal Structure Of Recombinant Farnesyl Diphospha 7e-87
1ubx_A367 Structure Of Farnesyl Pyrophosphate Synthetase Leng 1e-85
1ubv_A367 Structure Of Farnesyl Pyrophosphate Synthetase Leng 6e-85
3rye_A349 Human Fdps Synthase In Complex With A N-Methyl Pyri 1e-82
2f7m_F350 Crystal Structure Of Unliganded Human Fpps Length = 1e-82
1zw5_A355 X-Ray Structure Of Farnesyl Diphosphate Synthase Pr 1e-82
4h5d_F375 Crystal Structure Of Human Fpps In Complex With Ys_ 2e-82
1yq7_A374 Human Farnesyl Diphosphate Synthase Complexed With 2e-82
3b7l_A356 Human Farnesyl Diphosphate Synthase Complexed With 2e-82
2rah_A378 Human Fdps Synthase In Complex With Novel Inhibitor 2e-82
2qis_A374 Crystal Structure Of Human Farnesyl Pyrophosphate S 4e-82
3cp6_A376 Crystal Structure Of Human Farnesyl Diphosphate Syn 6e-82
3egt_A413 T. Brucei Farnesyl Diphosphate Synthase Complexed W 6e-62
2ewg_A390 T. Brucei Farnesyl Diphosphate Synthase Complexed W 7e-62
1yhk_A362 Trypanosoma Cruzi Farnesyl Diphosphate Synthase Len 2e-59
4e1e_A361 Crystal Structure Of Trypanosome Cruzi Farnesyl Dip 2e-59
4dzw_A362 Crystal Structure Of Trypanosome Cruzi Farnesyl Dip 2e-59
1yhm_A362 Structure Of The Complex Of Trypanosoma Cruzi Farne 1e-55
3cc9_A396 Crystal Structure Of Plasmodium Vivax Putative Poly 3e-52
3mav_A395 Crystal Structure Of Plasmodium Vivax Putative Farn 3e-52
2o1o_A368 Cryptosporidium Parvum Putative Polyprenyl Pyrophos 2e-25
1wmw_A330 Crystal Structure Of Geranulgeranyl Diphosphate Syn 3e-18
3lk5_A380 Crystal Structure Of Putative Geranylgeranyl Pyroph 1e-12
1wy0_A342 Crystal Structure Of Geranylgeranyl Pyrophosphate S 4e-09
3oyr_A345 Crystal Structure Of Polyprenyl Synthase From Caulo 1e-07
4f62_A317 Crystal Structure Of A Putative Farnesyl-Diphosphat 3e-07
3mzv_A341 Crystal Structure Of A Decaprenyl Diphosphate Synth 7e-07
1rtr_A301 Crystal Structure Of S. Aureus Farnesyl Pyrophospha 2e-05
1vg3_A299 Crystal Structure Of Octaprenyl Pyrophosphate Synth 2e-05
3uca_A324 Crystal Structure Of Isoprenoid Synthase (Target Ef 5e-05
4dhd_A358 Crystal Structure Of Isoprenoid Synthase A3msh1 (Ta 6e-05
3p8r_A302 Crystal Structure Of Polyprenyl Synthase From Vibri 6e-05
1v4k_A299 Crystal Structure Of Octaprenyl Pyrophosphate Synth 2e-04
1vg2_A299 Crystal Structure Of Octaprenyl Pyrophosphate Synth 2e-04
2azk_A289 Crystal Structure For The Mutant W136e Of Sulfolobu 2e-04
>pdb|1FPS|A Chain A, Crystal Structure Of Recombinant Farnesyl Diphosphate Synthase At 2.6 Angstroms Resolution Length = 348 Back     alignment and structure 
Iteration: 1

 Score =  317 bits (811), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 156/314 (49%), Positives = 213/314 (67%), Gaps = 1/314 (0%)
Query: 30  DSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYF 89
           D+   +  +L YN PGGK NRGL+VV +YR L    +   +    + A+GWCIE  QA+F
Sbjct: 35  DAVARLKEVLQYNAPGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIELFQAFF 94
Query: 90  LVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDL 149
           LV DDIMD S TRRGQ CW++   VG+ A ND  LL + + R+LK + R +PYYV LL+L
Sbjct: 95  LVADDIMDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLEL 154
Query: 150 FNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG- 208
           F +  +QT  GQM+DLIT    + DLS +S   ++ IV+YKTA+YSFYLPVA A+ M G 
Sbjct: 155 FLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGI 214
Query: 209 ENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCN 268
           ++ ++H   K IL++MG YFQ+QDD+LDCFG P + GKVGTDI+D KCSWLVV+ L+   
Sbjct: 215 DSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQRVT 274
Query: 269 EEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQA 328
            EQ++L+ +NYG+ +P  VAKVKELY+ + +  AF +YE+ SY +L + IE H  +  + 
Sbjct: 275 PEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRLPKE 334
Query: 329 VLKSFLAKIYKRQK 342
           +      KIYKRQK
Sbjct: 335 IFLGLAQKIYKRQK 348
>pdb|1UBX|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase Length = 367 Back     alignment and structure
>pdb|1UBV|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase Length = 367 Back     alignment and structure
>pdb|3RYE|A Chain A, Human Fdps Synthase In Complex With A N-Methyl Pyridinum Bisphosphonate Length = 349 Back     alignment and structure
>pdb|2F7M|F Chain F, Crystal Structure Of Unliganded Human Fpps Length = 350 Back     alignment and structure
>pdb|1ZW5|A Chain A, X-Ray Structure Of Farnesyl Diphosphate Synthase Protein Length = 355 Back     alignment and structure
>pdb|4H5D|F Chain F, Crystal Structure Of Human Fpps In Ternary Complex With Ys0470 And Inorganic Pyrophosphate Length = 375 Back     alignment and structure
>pdb|1YQ7|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With Risedronate Length = 374 Back     alignment and structure
>pdb|3B7L|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With Mg And Minodronate Length = 356 Back     alignment and structure
>pdb|2RAH|A Chain A, Human Fdps Synthase In Complex With Novel Inhibitor Length = 378 Back     alignment and structure
>pdb|2QIS|A Chain A, Crystal Structure Of Human Farnesyl Pyrophosphate Synthase T210s Mutant Bound To Risedronate Length = 374 Back     alignment and structure
>pdb|3CP6|A Chain A, Crystal Structure Of Human Farnesyl Diphosphate Synthase (T201a Mutant) Complexed With Mg And Biphosphonate Inhibitor Length = 376 Back     alignment and structure
>pdb|3EGT|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With Bisphosphonate Bph-722 Length = 413 Back     alignment and structure
>pdb|2EWG|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With Minodronate Length = 390 Back     alignment and structure
>pdb|1YHK|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Length = 362 Back     alignment and structure
>pdb|4E1E|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl Diphosphate Synthase In Complex With [2-(n-hexylamino)ethane-1,1-diyl]bisphosphonic Acid And Mg2+ Length = 361 Back     alignment and structure
>pdb|4DZW|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl Diphosphate Synthase In Complex With [2-(cyclohexylamino)ethane-1,1-diyl]bisphosphonic Acid And Mg2+ Length = 362 Back     alignment and structure
>pdb|1YHM|A Chain A, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl Disphosphate Synthase With Alendronate, Isopentenyl Diphosphate And Mg+2 Length = 362 Back     alignment and structure
>pdb|3CC9|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl Pyrophosphate Synthase In Complex With Geranylgeranyl Diphosphate Length = 396 Back     alignment and structure
>pdb|3MAV|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Farnesyl Pyrophosphate Synthase (Pv092040) Length = 395 Back     alignment and structure
>pdb|2O1O|A Chain A, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate Synthase (Cgd4_2550) In Complex With Risedronate. Length = 368 Back     alignment and structure
>pdb|1WMW|A Chain A, Crystal Structure Of Geranulgeranyl Diphosphate Synthase From Thermus Thermophilus Length = 330 Back     alignment and structure
>pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate Synthase From Corynebacterium Glutamicum Length = 380 Back     alignment and structure
>pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthetase From Pyrococcus Horikoshii Ot3 Length = 342 Back     alignment and structure
>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter Crescentus Cb15 Complexed With Calcium And Isoprenyl Diphosphate Length = 345 Back     alignment and structure
>pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate Synthase From Marinomonas Sp. Med121 (Target Efi-501980) Length = 317 Back     alignment and structure
>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase From Rhodobacter Capsulatus Length = 341 Back     alignment and structure
>pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate Synthase Length = 301 Back     alignment and structure
>pdb|1VG3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima A76yS77F MUTANT Length = 299 Back     alignment and structure
>pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target Efi-501974) From Clostridium Perfringens Length = 324 Back     alignment and structure
>pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target Efi-501992) From Pyrobaculum Calidifontis Length = 358 Back     alignment and structure
>pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio Cholerae Length = 302 Back     alignment and structure
>pdb|1V4K|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima S77f Mutant Length = 299 Back     alignment and structure
>pdb|1VG2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima A76y Mutant Length = 299 Back     alignment and structure
>pdb|2AZK|A Chain A, Crystal Structure For The Mutant W136e Of Sulfolobus Solfataricus Hexaprenyl Pyrophosphate Synthase Length = 289 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
1uby_A367 FPS, farnesyl diphosphate synthase; transferase, i 1e-155
2qis_A374 Farnesyl pyrophosphate synthetase; trans-prenyltra 1e-151
3dyh_A390 Farnesyl pyrophosphate synthase; protein-bisphosph 1e-146
1yhl_A362 Farnesyl pyrophosphate synthase; farnesyl diphosph 1e-145
2ihi_A395 Pyrophosphate synthase; PV092040, structural genom 1e-134
2her_A368 Fragment, farnesyl pyrophosphate synthase; farnesy 1e-129
3lk5_A380 Geranylgeranyl pyrophosphate synthase; structural 2e-35
1wmw_A330 Geranylgeranyl diphosphate synthetase; GGPP, preny 2e-28
3nf2_A352 Putative polyprenyl synthetase; isoprenyl diphosph 1e-19
4dhd_A358 Polyprenyl synthetase; isoprenoid synthesis, isopr 3e-19
1wy0_A342 Geranylgeranyl pyrophosphate synthetase; pyrococcu 8e-19
2e8v_A340 Geranylgeranyl pyrophosphate synthetase; prenyltra 9e-16
2q80_A301 Geranylgeranyl pyrophosphate synthetase; isoprenoi 3e-15
2azj_A289 Geranylgeranyl pyrophosphate synthetase; hexpps, t 1e-12
3oyr_A345 Trans-isoprenyl diphosphate synthase; isoprenyl sy 2e-10
3tc1_A315 Octaprenyl pyrophosphate synthase; all alpha-helic 4e-10
3mzv_A341 Decaprenyl diphosphate synthase; transferase, stru 5e-10
3pko_A334 Geranylgeranyl pyrophosphate synthase; isoprenyl d 7e-10
4fp4_A285 Polyprenyl synthetase; isoprenoid synthesis, isopr 2e-09
3aqb_B325 Component B of hexaprenyl diphosphate synthase; pr 2e-09
3rmg_A334 Octaprenyl-diphosphate synthase; structural genomi 3e-08
3lom_A313 Geranyltranstransferase; geranyltransferase, struc 4e-08
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 5e-08
3m0g_A297 Farnesyl diphosphate synthase; structural genomics 7e-08
3p8r_A302 Geranyltranstransferase; isoprenyl synthase, struc 9e-08
3uca_A324 Geranyltranstransferase; isoprenoid synthesis, iso 1e-07
3llw_A311 Geranyltranstransferase (ISPA); structural genomic 2e-07
3lsn_A304 Geranyltranstransferase; structural genomics, prot 3e-07
1rqj_A299 Geranyltranstransferase; bisphosphonate, isoprenyl 4e-07
3npk_A291 Geranyltranstransferase; isoprene biosynthesis, SG 5e-07
3ts7_A324 Geranyltranstransferase; isoprenoid synthesis, far 6e-07
3p8l_A302 Geranyltranstransferase; isoprenyl synthase, struc 9e-07
2h8o_A335 Geranyltranstransferase; geranyltransferase,agroba 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1rtr_A301 Geranyltranstransferase; 2.50A {Staphylococcus aur 2e-06
3apz_A348 Geranyl diphosphate synthase; prenyltransferase, a 2e-06
1v4e_A299 Octoprenyl-diphosphate synthase; trans-type prenyl 3e-06
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 4e-06
4f62_A317 Geranyltranstransferase; enzyme function initiativ 5e-06
2ftz_A284 Geranyltranstransferase; TM0161, structural GE joi 7e-06
3pde_A309 Farnesyl-diphosphate synthase; isoprenyl diphospha 9e-06
2j1p_A293 Geranylgeranyl pyrophosphate synthetase; transfera 6e-04
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A Length = 367 Back     alignment and structure
 Score =  439 bits (1130), Expect = e-155
 Identities = 157/344 (45%), Positives = 220/344 (63%), Gaps = 2/344 (0%)

Query: 1   MSDLKSRFIEVYGVLKQELLND-PAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYR 59
           +   +  F+  +  + ++L  D        D+   +  +L YN PGGK NRGL+VV +YR
Sbjct: 24  VEREREEFVGFFPQIVRDLTEDGIGHPEVGDAVARLKEVLQYNAPGGKCNRGLTVVAAYR 83

Query: 60  LLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAA 119
            L    +   +    + A+GWCIE  QA  LV DDIMD S TRRGQ CW++   VG+ A 
Sbjct: 84  ELSGPGQKDAESLRCALAVGWCIELFQAASLVADDIMDQSLTRRGQLCWYKKEGVGLDAI 143

Query: 120 NDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYS 179
           ND  LL + + R+LK + R +PYYV LL+LF +  +QT  GQM+DLIT    + DLS +S
Sbjct: 144 NDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFS 203

Query: 180 LPLHRRIVQYKTAYYSFYLPVACALLMAG-ENLDKHVEVKDILVQMGIYFQVQDDFLDCF 238
              ++ IV+YKTA+YSFYLPVA A+ M G ++ ++H   K IL++MG YFQ+QDD+LDCF
Sbjct: 204 EERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCF 263

Query: 239 GSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLD 298
           G P + G VGTDI+D KCSWLVV+ L+    EQ++L+ +NYG+ +P  VAKVKELY+ + 
Sbjct: 264 GDPALTGAVGTDIQDNKCSWLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVG 323

Query: 299 LEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 342
           +  AF +YE+ SY +L + IE H  +  + +      KIYKRQK
Sbjct: 324 MRAAFQQYEESSYRRLQELIEKHSNRLPKEIFLGLAQKIYKRQK 367
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ... Length = 374 Back     alignment and structure
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A* Length = 390 Back     alignment and structure
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A* Length = 362 Back     alignment and structure
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A* Length = 380 Back     alignment and structure
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus} Length = 330 Back     alignment and structure
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} Length = 352 Back     alignment and structure
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} Length = 358 Back     alignment and structure
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} Length = 342 Back     alignment and structure
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... Length = 340 Back     alignment and structure
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 Length = 301 Back     alignment and structure
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A Length = 289 Back     alignment and structure
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Length = 345 Back     alignment and structure
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori} Length = 315 Back     alignment and structure
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Length = 341 Back     alignment and structure
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A Length = 334 Back     alignment and structure
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis} Length = 285 Back     alignment and structure
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B* Length = 325 Back     alignment and structure
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Length = 334 Back     alignment and structure
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} Length = 313 Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Length = 360 Back     alignment and structure
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Length = 297 Back     alignment and structure
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} Length = 302 Back     alignment and structure
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens} Length = 324 Back     alignment and structure
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A* Length = 311 Back     alignment and structure
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* Length = 304 Back     alignment and structure
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A* Length = 299 Back     alignment and structure
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} Length = 291 Back     alignment and structure
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} Length = 324 Back     alignment and structure
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} Length = 302 Back     alignment and structure
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens} Length = 335 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Length = 301 Back     alignment and structure
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A* Length = 348 Back     alignment and structure
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A Length = 299 Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Length = 295 Back     alignment and structure
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} Length = 317 Back     alignment and structure
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} Length = 284 Back     alignment and structure
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* Length = 309 Back     alignment and structure
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A* Length = 293 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query342
1uby_A367 FPS, farnesyl diphosphate synthase; transferase, i 100.0
2ihi_A395 Pyrophosphate synthase; PV092040, structural genom 100.0
2qis_A374 Farnesyl pyrophosphate synthetase; trans-prenyltra 100.0
3dyh_A390 Farnesyl pyrophosphate synthase; protein-bisphosph 100.0
1yhl_A362 Farnesyl pyrophosphate synthase; farnesyl diphosph 100.0
3mav_A395 Farnesyl pyrophosphate synthase; PV092040, structu 100.0
3mzv_A341 Decaprenyl diphosphate synthase; transferase, stru 100.0
3rmg_A334 Octaprenyl-diphosphate synthase; structural genomi 100.0
3oyr_A345 Trans-isoprenyl diphosphate synthase; isoprenyl sy 100.0
1wy0_A342 Geranylgeranyl pyrophosphate synthetase; pyrococcu 100.0
2her_A368 Fragment, farnesyl pyrophosphate synthase; farnesy 100.0
3lk5_A380 Geranylgeranyl pyrophosphate synthase; structural 100.0
4dhd_A358 Polyprenyl synthetase; isoprenoid synthesis, isopr 100.0
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 100.0
3pko_A334 Geranylgeranyl pyrophosphate synthase; isoprenyl d 100.0
1wmw_A330 Geranylgeranyl diphosphate synthetase; GGPP, preny 100.0
3nf2_A352 Putative polyprenyl synthetase; isoprenyl diphosph 100.0
3aqb_B325 Component B of hexaprenyl diphosphate synthase; pr 100.0
3tc1_A315 Octaprenyl pyrophosphate synthase; all alpha-helic 100.0
3apz_A348 Geranyl diphosphate synthase; prenyltransferase, a 100.0
2e8v_A340 Geranylgeranyl pyrophosphate synthetase; prenyltra 100.0
2q58_A368 Fragment, farnesyl pyrophosphate synthase; farnesy 100.0
2q80_A301 Geranylgeranyl pyrophosphate synthetase; isoprenoi 100.0
1v4e_A299 Octoprenyl-diphosphate synthase; trans-type prenyl 100.0
3ts7_A324 Geranyltranstransferase; isoprenoid synthesis, far 100.0
4f62_A317 Geranyltranstransferase; enzyme function initiativ 100.0
1rtr_A301 Geranyltranstransferase; 2.50A {Staphylococcus aur 100.0
3lsn_A304 Geranyltranstransferase; structural genomics, prot 100.0
3pde_A309 Farnesyl-diphosphate synthase; isoprenyl diphospha 100.0
2h8o_A335 Geranyltranstransferase; geranyltransferase,agroba 100.0
3lom_A313 Geranyltranstransferase; geranyltransferase, struc 100.0
3uca_A324 Geranyltranstransferase; isoprenoid synthesis, iso 100.0
3p8r_A302 Geranyltranstransferase; isoprenyl synthase, struc 100.0
3p8l_A302 Geranyltranstransferase; isoprenyl synthase, struc 100.0
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 100.0
1rqj_A299 Geranyltranstransferase; bisphosphonate, isoprenyl 100.0
3m0g_A297 Farnesyl diphosphate synthase; structural genomics 100.0
3llw_A311 Geranyltranstransferase (ISPA); structural genomic 100.0
2ftz_A284 Geranyltranstransferase; TM0161, structural GE joi 100.0
3npk_A291 Geranyltranstransferase; isoprene biosynthesis, SG 100.0
2azj_A289 Geranylgeranyl pyrophosphate synthetase; hexpps, t 100.0
2j1p_A293 Geranylgeranyl pyrophosphate synthetase; transfera 100.0
4fp4_A285 Polyprenyl synthetase; isoprenoid synthesis, isopr 100.0
3kra_B274 Geranyl diphosphate synthase small subunit; prenyl 100.0
3qkc_B273 Geranyl diphosphate synthase small subunit; struct 100.0
3vj8_A343 Squalene synthase; farnesyl-diphosphate farnesyltr 94.26
4hd1_A294 Squalene synthase HPNC; MCSG, structural genomics, 94.12
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 93.96
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 85.73
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 80.07
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A Back     alignment and structure
Probab=100.00  E-value=1.1e-69  Score=521.44  Aligned_cols=338  Identities=47%  Similarity=0.818  Sum_probs=303.2

Q ss_pred             hHHHHHHHHHHHHHHHhCCC-CCCCCcchHHHHHHHhhcccCCCccchHHHHHHHHHHhhCCC-CCChHHHHHHHHHHHH
Q 019339            4 LKSRFIEVYGVLKQELLNDP-AFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGK-ELTDDEFFLSSALGWC   81 (342)
Q Consensus         4 ~~~~f~~~~~~l~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~GK~~Rp~l~~~~~~~~~~g~-~~~~~~~~~a~~lA~a   81 (342)
                      ++.+|+.+|+.+.+++.... ....++..++++.++++|...||||+||++|+++++++ ||. +.+++....+..+|++
T Consensus        27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~y~~~gGKrlRp~l~l~~~~~~-~~~~~~~~~~~~~~~~~A~a  105 (367)
T 1uby_A           27 EREEFVGFFPQIVRDLTEDGIGHPEVGDAVARLKEVLQYNAPGGKCNRGLTVVAAYREL-SGPGQKDAESLRCALAVGWC  105 (367)
T ss_dssp             HHHHHHHTHHHHHHHHHTTTSSCTTTHHHHHHHHHHHHHHSSSSCCHHHHHHHHHHHHH-CCGGGCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHhhhcCCCcchhHHHHHHHHHHh-CCCccCChhhHHHHHHHHHH
Confidence            46789999999999998743 33345566789999999999999999999999999999 441 1234434467889999


Q ss_pred             HHHHHHHHHHhhhhcCCCCCCcCcccccccccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHH
Q 019339           82 IEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQ  161 (342)
Q Consensus        82 ~EllH~asLihDDI~D~~~~RRg~p~~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ  161 (342)
                      +|+||+||||||||||+|++|||+||||++||++.+++||++++.+.++.++++...+.+...++++.+++++..++.||
T Consensus       106 iEliH~asLiHDDImD~s~~RRG~pt~h~~~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ  185 (367)
T 1uby_A          106 IELFQAASLVADDIMDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQ  185 (367)
T ss_dssp             HHHHHHHHHHHHHHHHTCCEETTEECGGGSTTTTTHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcccCCCCCCCCCCChhhccCcHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999875799999999988999998865444456889999999999999999


Q ss_pred             HHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 019339          162 MIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG-ENLDKHVEVKDILVQMGIYFQVQDDFLDCFGS  240 (342)
Q Consensus       162 ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~  240 (342)
                      .+|+.+...+..++..+++++|++|+.+|||+|||++||++|++++| ++++..+.+++||.++|+||||+||++|++++
T Consensus       186 ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd  265 (367)
T 1uby_A          186 MLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGD  265 (367)
T ss_dssp             HHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999875443444467999999999999999999999999999999 89999999999999999999999999999999


Q ss_pred             ccccCCcccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhc
Q 019339          241 PEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEA  320 (342)
Q Consensus       241 ~~~~GK~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~  320 (342)
                      ++.+||.|+|+++||+|||++++++.+++++++.|.+++++.++++++.++++++++|+.++++.+++.+.++|++.|+.
T Consensus       266 ~~~~GK~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~  345 (367)
T 1uby_A          266 PALTGAVGTDIQDNKCSWLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEK  345 (367)
T ss_dssp             TTCSSCCCCCSSSCCCCHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCchhhHHcCCchHHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999988778889999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHhhccC
Q 019339          321 HPTKEVQAVLKSFLAKIYKRQK  342 (342)
Q Consensus       321 lp~~~~~~~L~~l~~~~~~R~~  342 (342)
                      +|+++.++.|..+++++++|+|
T Consensus       346 lp~~~~k~~L~~l~~~i~~R~~  367 (367)
T 1uby_A          346 HSNRLPKEIFLGLAQKIYKRQK  367 (367)
T ss_dssp             HCSSSCTHHHHHHHHHHCCCCC
T ss_pred             CCCcHHHHHHHHHHHHHHhCcC
Confidence            9998899999999999999986
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ... Back     alignment and structure
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A* Back     alignment and structure
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A* Back     alignment and structure
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A* Back     alignment and structure
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Back     alignment and structure
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Back     alignment and structure
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A* Back     alignment and structure
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A* Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A Back     alignment and structure
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus} Back     alignment and structure
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} Back     alignment and structure
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B* Back     alignment and structure
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori} Back     alignment and structure
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A* Back     alignment and structure
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... Back     alignment and structure
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* Back     alignment and structure
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 Back     alignment and structure
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A Back     alignment and structure
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} Back     alignment and structure
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} Back     alignment and structure
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Back     alignment and structure
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* Back     alignment and structure
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* Back     alignment and structure
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens} Back     alignment and structure
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} Back     alignment and structure
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens} Back     alignment and structure
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1 Back     alignment and structure
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A* Back     alignment and structure
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Back     alignment and structure
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A* Back     alignment and structure
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} Back     alignment and structure
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} Back     alignment and structure
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A Back     alignment and structure
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A* Back     alignment and structure
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis} Back     alignment and structure
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B* Back     alignment and structure
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus} Back     alignment and structure
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A* Back     alignment and structure
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 342
d1fpsa_348 a.128.1.1 (A:) Farnesyl diphosphate synthase (gera 4e-63
d1rqja_299 a.128.1.1 (A:) Farnesyl diphosphate synthase (gera 4e-15
d2q80a1291 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate s 5e-15
d1v4ea_280 a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Th 6e-12
d1rtra_290 a.128.1.1 (A:) Farnesyl diphosphate synthase (gera 3e-11
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]} Length = 348 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Isoprenyl diphosphate synthases
domain: Farnesyl diphosphate synthase (geranyltranstransferase)
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  202 bits (514), Expect = 4e-63
 Identities = 156/340 (45%), Positives = 221/340 (65%), Gaps = 2/340 (0%)

Query: 5   KSRFIEVYGVLKQELLNDPAFEFD-HDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKE 63
           +  F+  +  + ++L  D     +  D+   +  +L YN PGGK NRGL+VV +YR L  
Sbjct: 9   REEFVGFFPQIVRDLTEDGIGHPEVGDAVARLKEVLQYNAPGGKCNRGLTVVAAYRELSG 68

Query: 64  GKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGV 123
             +   +    + A+GWCIE  QA+FLV DDIMD S TRRGQ CW++   VG+ A ND  
Sbjct: 69  PGQKDAESLRCALAVGWCIELFQAFFLVADDIMDQSLTRRGQLCWYKKEGVGLDAINDSF 128

Query: 124 LLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLH 183
           LL + + R+LK + R +PYYV LL+LF +  +QT  GQM+DLIT    + DLS +S   +
Sbjct: 129 LLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERY 188

Query: 184 RRIVQYKTAYYSFYLPV-ACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPE 242
           + IV+YKTA+YSFYLPV A   ++  ++ ++H   K IL++MG YFQ+QDD+LDCFG P 
Sbjct: 189 KAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPA 248

Query: 243 VIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGA 302
           + GKVGTDI+D KCSWLVV+ L+    EQ++L+ +NYG+ +P  VAKVKELY+ + +  A
Sbjct: 249 LTGKVGTDIQDNKCSWLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAA 308

Query: 303 FVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 342
           F +YE+ SY +L + IE H  +  + +      KIYKRQK
Sbjct: 309 FQQYEESSYRRLQELIEKHSNRLPKEIFLGLAQKIYKRQK 348
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} Length = 299 Back     information, alignment and structure
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} Length = 291 Back     information, alignment and structure
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]} Length = 280 Back     information, alignment and structure
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]} Length = 290 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query342
d1fpsa_348 Farnesyl diphosphate synthase (geranyltranstransfe 100.0
d2q80a1291 Geranylgeranyl pyrophosphate synthetase {Human (Ho 100.0
d1v4ea_280 Octoprenyl-diphosphate synthase {Thermotoga mariti 100.0
d1rqja_299 Farnesyl diphosphate synthase (geranyltranstransfe 100.0
d1rtra_290 Farnesyl diphosphate synthase (geranyltranstransfe 100.0
d1ezfa_333 Squalene synthase {Human (Homo sapiens) [TaxId: 96 95.18
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 84.42
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Isoprenyl diphosphate synthases
domain: Farnesyl diphosphate synthase (geranyltranstransferase)
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=4e-67  Score=500.10  Aligned_cols=338  Identities=46%  Similarity=0.806  Sum_probs=294.5

Q ss_pred             hhHHHHHHHHHHHHHHHhCCC-CCCCCcchHHHHHHHhhcccCCCccchHHHHHHHHHHhhCCC-CCChHHHHHHHHHHH
Q 019339            3 DLKSRFIEVYGVLKQELLNDP-AFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGK-ELTDDEFFLSSALGW   80 (342)
Q Consensus         3 ~~~~~f~~~~~~l~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~GK~~Rp~l~~~~~~~~~~g~-~~~~~~~~~a~~lA~   80 (342)
                      .++.+|.++|+.+-.++.... .-+.+.....++.++++|.+.||||+||++|+++++++ ||. ..+.+.+..++++|+
T Consensus         7 ~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~y~~~GGKrlRp~l~l~~~~~~-~~~~~~~~~~~~~~~~~A~   85 (348)
T d1fpsa_           7 REREEFVGFFPQIVRDLTEDGIGHPEVGDAVARLKEVLQYNAPGGKCNRGLTVVAAYREL-SGPGQKDAESLRCALAVGW   85 (348)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTTTTCTTTHHHHHHHHHHHHHHSSCSCCHHHHHHHHHHHHH-CCTTSCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCcccHhHHHHHHHHHHh-CCCcccchHHHHHHHHHHH
Confidence            467899999999999988732 22344556688999999999999999999999999999 442 233455667889999


Q ss_pred             HHHHHHHHHHHhhhhcCCCCCCcCcccccccccch-hhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhH
Q 019339           81 CIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTAS  159 (342)
Q Consensus        81 a~EllH~asLihDDI~D~~~~RRg~p~~~~~~g~~-~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (342)
                      ++|+||+||||||||||+|++|||+||||++||++ ++..||+++. ..++.++.+...+.+...++++.+++++..++.
T Consensus        86 avEliH~asLihDDi~D~~~~RRG~pt~~~~~g~~~ail~gd~ll~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (348)
T d1fpsa_          86 CIELFQAFFLVADDIMDQSLTRRGQLCWYKKEGVGLDAINDSFLLE-SSVYRVLKKYCRQRPYYVHLLELFLQTAYQTEL  164 (348)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCEETTEECTTTSTTTTTTHHHHHHHHH-HHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccccCCccccccchhhhhccccHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHHhhhhhhhHHHH
Confidence            99999999999999999999999999999999987 5566666543 345666666554555678899999999999999


Q ss_pred             HHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 019339          160 GQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACAL-LMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCF  238 (342)
Q Consensus       160 GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga-~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~  238 (342)
                      ||.+|+.+......+...+++++|++|+.+|||.|+|..++.+++ ++++.+++..+.++.||.++|+||||+||++|++
T Consensus       165 GQ~ldl~~~~~~~~~~~~~t~~~Y~~~i~~KTa~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~lGiaFQI~DDilD~~  244 (348)
T d1fpsa_         165 GQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCF  244 (348)
T ss_dssp             HHHHHHHHSCTTTCCSSSCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhhhccccccccccCHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhccccchhhccccccccchHHHHHHHHhhhh
Confidence            999999887665555556799999999999999886656655554 5667788889999999999999999999999999


Q ss_pred             CCccccCCcccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHh
Q 019339          239 GSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSI  318 (342)
Q Consensus       239 ~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l  318 (342)
                      ++++.+||.|+||++||+|||++++++.+++++++.|.+++++.+++++++++++++++|++++++++++.+.++|.+.+
T Consensus       245 gd~~~~GK~g~Dl~egK~Tlpii~al~~~~~~~r~~l~~~~~~~~~e~i~~v~~~i~~~g~~~~~~~~~~~~~~~a~~~l  324 (348)
T d1fpsa_         245 GDPALTGKVGTDIQDNKCSWLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELI  324 (348)
T ss_dssp             CCSSCCSSCSCCCSSCCCCHHHHHHHHTCCHHHHHHHHHHSSSSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhccCcccccccCCccHHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988888999999999999999999999999999999999


Q ss_pred             hcCCChHHHHHHHHHHHHHhhccC
Q 019339          319 EAHPTKEVQAVLKSFLAKIYKRQK  342 (342)
Q Consensus       319 ~~lp~~~~~~~L~~l~~~~~~R~~  342 (342)
                      +.+|++..++.|..+++++++|+|
T Consensus       325 ~~~~~~~~~~~L~~l~~~i~~R~k  348 (348)
T d1fpsa_         325 EKHSNRLPKEIFLGLAQKIYKRQK  348 (348)
T ss_dssp             TTTCSSSCTHHHHHHHHHHSCCCC
T ss_pred             HcCCCcHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999987
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure