Citrus Sinensis ID: 019500

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Protein Sequence
MARQVSSRVVRSLYMSSEICCGQSRSFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGLTK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHccccccccccccccccccccEEEEcccccEEEccccccHHHHHHHHHHHHcccEEcccccccccEEEccccccccHHHHHHHHcccEEEEEEccccHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHcccccEEEcccccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccccEEEEEcccccHHHHHHHHHHcccEEcccHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHccccccEEEEEccccHHHHHHHHHHHHHccEEEEEEcccccccEEccEEEEccHHHHHHHHcccEEEEcccHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHccccccEEEcccccEEEEcccEEEEcccHHHccEEEEEEEEccHHHHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHHcccccEEEEEEccccccccccccccEEEEccccccccccccccHHHHHHHHHHcccEEcccHHHHHHHHHHHccHccccc
Coil and Loop (DISEMBL)
MARQVSSRVVRSLYMSseiccgqsrsfttapppapavfvdknTRVICQgitgkngtfhtEQAIEygtkmvggvtpkkggtehlglpvFNTVAEAKAETKANasaiyvpppFAAAAILEAMEAELDLVVCItegipqhdMVRVKAALNnqsktrlvgpncpgvikpgeckigimpgyihkpgrigivsrsgtlTYEAVFQTTAVGlgqstcvgiggdpfngtnfvdCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAgltappgrrmghagvDVYTIFGSAivsggkgtaQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGLTK
Flexible Loop (DISEMBL)
marqvssrvvRSLYMSSEICCGQSRSFTTAPPPAPAVFVDKNTRVICQGItgkngtfhteqAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALnnqsktrlvgpncpgviKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREagvtvvespakigAAMLEVFKQRGLTK
Low Complexity Region (SEG)
MARQVSSRVVRSLYMSSEICCGQSRSFTTapppapaVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFaaaaileameaeldlVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTegiiligeiggtaeeDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGLTK
Disordered region (IsUnstruct)
**********RSLYMSSEICCGQSRSFTTA**PAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF*******
Disordered Region (DISOPRED)
*******************************PPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRG***
Disordered Region (DISEMBL)
**********RSLYMSSEICCGQSRSFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGLTK
Disordered Region (DISPRO)
***************************TTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQR****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARQVSSRVVRSLYMSSEICCGQSRSFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGLTK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	340	2.2.26 [Sep-21-2011]
Q8LAD2	341	Succinyl-CoA ligase [ADP-	yes	no	0.908	0.906	0.871	1e-160
Q8GTQ9	332	Succinyl-CoA ligase [ADP-	N/A	no	0.961	0.984	0.830	1e-159
P68209	347	Succinyl-CoA ligase [ADP-	no	no	0.970	0.951	0.783	1e-157
Q6DQL1	337	Succinyl-CoA ligase [ADP-	N/A	no	0.961	0.970	0.827	1e-154
Q6ZL94	331	Probable succinyl-CoA lig	yes	no	0.873	0.897	0.882	1e-150
Q4ULQ8	292	Succinyl-CoA ligase [ADP-	yes	no	0.852	0.993	0.69	1e-116
Q1RH56	291	Succinyl-CoA ligase [ADP-	yes	no	0.85	0.993	0.685	1e-115
Q9AKE1	292	Succinyl-CoA ligase [ADP-	yes	no	0.852	0.993	0.676	1e-114
Q92I22	292	Succinyl-CoA ligase [ADP-	yes	no	0.852	0.993	0.68	1e-113
O08371	292	Succinyl-CoA ligase [ADP-	yes	no	0.852	0.993	0.673	1e-113

>sp|Q8LAD2|SUCA2_ARATH Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=At5g23250 PE=1 SV=2

 Score =  565 bits (1456), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 277/318 (87%), Positives = 294/318 (92%), Gaps = 9/318 (2%)

Query: 23  QSRSFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH 82
           QSRSF T PPP  AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEH
Sbjct: 33  QSRSFGTTPPPPAAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEH 92

Query: 83  LGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRV 142
           LGLPVFNTVAEAKAETKANAS IYVP PFAAAAI+E + AELDL+VCITEGIPQHDMVRV
Sbjct: 93  LGLPVFNTVAEAKAETKANASVIYVPAPFAAAAIMEGLAAELDLIVCITEGIPQHDMVRV 152

Query: 143 KAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTA 202
           KAALN+QSKTRL+GPNCPG+IKPGECKIGIMPGYIHKPG+IGIVSRSGTLTYEAVFQTTA
Sbjct: 153 KAALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTA 212

Query: 203 VGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGT 262
           VGLGQSTCVGIGGDPFNGTNFVDC+ KF  DPQTEGI+LIGEIGGTAEEDAAALIKE+GT
Sbjct: 213 VGLGQSTCVGIGGDPFNGTNFVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIKENGT 272

Query: 263 EKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESP 322
           +KP+VAFIAGLTAPPGRRMGHAG         AIVSGGKGTAQDKIK+LR+AGV VVESP
Sbjct: 273 DKPVVAFIAGLTAPPGRRMGHAG---------AIVSGGKGTAQDKIKSLRDAGVKVVESP 323

Query: 323 AKIGAAMLEVFKQRGLTK 340
           AKIGAAM E+F++RGL K
Sbjct: 324 AKIGAAMFELFQERGLLK 341

Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 5

>sp|Q8GTQ9|SUCA1_SOLLC Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial OS=Solanum lycopersicum GN=SCOA PE=1 SV=1

 Score =  562 bits (1448), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 284/342 (83%), Positives = 301/342 (88%), Gaps = 15/342 (4%)

Query: 1   MARQVSSRVVR-SLYMSS---EICCGQSRSFTTAPPPAPAVFVDKNTRVICQGITGKNGT 56
           MARQ +  +   S  +SS      C +   +  A PPA  VFVDKNTRVICQGITGKNGT
Sbjct: 1   MARQATKLIANLSKKLSSSNPHTRCSEQTVWIGAAPPA--VFVDKNTRVICQGITGKNGT 58

Query: 57  FHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI 116
           FHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTV EAKAETKANAS IYVPPPFAAAAI
Sbjct: 59  FHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVEEAKAETKANASVIYVPPPFAAAAI 118

Query: 117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGY 176
           +E +EAELDL+VCITEGIPQHDMVRVKAAL  QS+TRL+GPNCPG+IKPGECKIGIMPGY
Sbjct: 119 MEGLEAELDLIVCITEGIPQHDMVRVKAALKKQSRTRLIGPNCPGIIKPGECKIGIMPGY 178

Query: 177 IHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQT 236
           IHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDC+ KFIADPQT
Sbjct: 179 IHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFIADPQT 238

Query: 237 EGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAI 296
           EGI+LIGEIGGTAEEDAAALIKESGT+KP+VAFIAGLTAPPGRRMGHAG         AI
Sbjct: 239 EGIVLIGEIGGTAEEDAAALIKESGTQKPVVAFIAGLTAPPGRRMGHAG---------AI 289

Query: 297 VSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGL 338
           VSGGKGTAQDKIK L+EAGVTV ESPAKIG +MLEVFKQRGL
Sbjct: 290 VSGGKGTAQDKIKALKEAGVTVCESPAKIGVSMLEVFKQRGL 331

Solanum lycopersicum (taxid: 4081)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|P68209|SUCA1_ARATH Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08300 PE=1 SV=1

 Score =  556 bits (1432), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 279/356 (78%), Positives = 304/356 (85%), Gaps = 26/356 (7%)

Query: 1   MARQVSSRVVRSLYMSSEICCG----------------QSRSFTTAPPPAPAVFVDKNTR 44
           M+RQV+ R++ SL   +  C                  QSRSF + P P  AVFVDKNTR
Sbjct: 1   MSRQVA-RLIGSLSSKARRCSTGGSEVFPSCQSLTSLTQSRSFASDPHPPAAVFVDKNTR 59

Query: 45  VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASA 104
           V+CQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEHLGLPVFN+VAEAKA+TKANAS 
Sbjct: 60  VLCQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNSVAEAKADTKANASV 119

Query: 105 IYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK 164
           IYVP PFAAAAI+E +EAELDL+VCITEGIPQHDMVRVK ALN+QSKTRL+GPNCPG+IK
Sbjct: 120 IYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMVRVKHALNSQSKTRLIGPNCPGIIK 179

Query: 165 PGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFV 224
           PGECKIGIMPGYIHKPG+IGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFV
Sbjct: 180 PGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFV 239

Query: 225 DCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHA 284
           DC+ KF  DPQTEGI+LIGEIGGTAEEDAAALIK SGTEKP+VAFIAGLTAPPGRRMGHA
Sbjct: 240 DCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIKASGTEKPVVAFIAGLTAPPGRRMGHA 299

Query: 285 GVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGLTK 340
           G         AIVSGGKGTAQDKIK+L +AGV VVESPAKIG+AM E+F++RGL K
Sbjct: 300 G---------AIVSGGKGTAQDKIKSLNDAGVKVVESPAKIGSAMYELFQERGLLK 346

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|Q6DQL1|SUCA2_SOLLC Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial OS=Solanum lycopersicum PE=1 SV=1

 Score =  543 bits (1399), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 287/347 (82%), Positives = 306/347 (88%), Gaps = 20/347 (5%)

Query: 1   MARQVSSRVVRSLY---------MSSEICCGQSRSFTTAPPPAPAVFVDKNTRVICQGIT 51
           MARQ ++R++ +L          MS+     Q R F + PPP PAVFVDKNTRVICQGIT
Sbjct: 1   MARQ-ATRLISNLSTKLNPSSPTMSASPLWHQYRYFGSPPPP-PAVFVDKNTRVICQGIT 58

Query: 52  GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF 111
           GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK ETKANAS +YVPPPF
Sbjct: 59  GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKVETKANASVVYVPPPF 118

Query: 112 AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIG 171
           AAAAI+EAMEAELDLVVCITEGIPQHDMVRVKAAL  Q +TRL+GPNCPG+IKPGECKIG
Sbjct: 119 AAAAIMEAMEAELDLVVCITEGIPQHDMVRVKAALKKQLRTRLIGPNCPGIIKPGECKIG 178

Query: 172 IMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFI 231
           IMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDC+ +FI
Sbjct: 179 IMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLERFI 238

Query: 232 ADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGVDVYTI 291
           ADPQTEGI+LIGEIGGTAEEDAAALIKESGT+KP+VAFIAGLTAPPGRRMGHAG      
Sbjct: 239 ADPQTEGIVLIGEIGGTAEEDAAALIKESGTQKPVVAFIAGLTAPPGRRMGHAG------ 292

Query: 292 FGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGL 338
              AIVSGGKGTAQDKIK L+EAGVTV ESPAKIG  ML+VFKQRGL
Sbjct: 293 ---AIVSGGKGTAQDKIKALKEAGVTVCESPAKIGVTMLDVFKQRGL 336

Solanum lycopersicum (taxid: 4081)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|Q6ZL94|SUCA_ORYSJ Probable succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=Os07g0577700 PE=1 SV=1

 Score =  531 bits (1368), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 270/306 (88%), Positives = 287/306 (93%), Gaps = 9/306 (2%)

Query: 33  PAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVA 92
           P+PAVFVDK+TRVICQGITGKNGTFHTEQAIEYGT MVGGVTPKKGGTEHLGLPVFN+VA
Sbjct: 33  PSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTTMVGGVTPKKGGTEHLGLPVFNSVA 92

Query: 93  EAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKT 152
           EAKAETKANAS IYVPPPFAAAAI+EAMEAELDLVVCITEGIPQHDMV+VKAALN QSKT
Sbjct: 93  EAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVKVKAALNKQSKT 152

Query: 153 RLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVG 212
           RL+GPNCPG+IKPGECKIGIMPGYIHKPGR+GIVSRSGTLTYEAVFQTTAVGLGQSTCVG
Sbjct: 153 RLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTAVGLGQSTCVG 212

Query: 213 IGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAG 272
           IGGDPFNGTNFVDC+ KF+ DPQTEGI+LIGEIGGTAEEDAAA I+ES T+KP+VAFIAG
Sbjct: 213 IGGDPFNGTNFVDCLEKFVDDPQTEGIVLIGEIGGTAEEDAAAFIQESKTQKPVVAFIAG 272

Query: 273 LTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEV 332
           LTAPPGRRMGHAG         AIVSGGKGTAQDKIK LREAGVTVVESPAKIG+ M E+
Sbjct: 273 LTAPPGRRMGHAG---------AIVSGGKGTAQDKIKALREAGVTVVESPAKIGSTMFEI 323

Query: 333 FKQRGL 338
           FKQRG+
Sbjct: 324 FKQRGM 329

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|Q4ULQ8|SUCD_RICFE Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=sucD PE=3 SV=1

 Score =  417 bits (1072), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/300 (69%), Positives = 244/300 (81%), Gaps = 10/300 (3%)

Query: 36  AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
           A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG  HL LPV+NTV EAK
Sbjct: 2   AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLDLPVYNTVHEAK 61

Query: 96  AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
           A+T ANAS IYVPP FAA +ILEA++AE+++VVCITEGIP  DMV+VK AL   SKTRL+
Sbjct: 62  AKTGANASVIYVPPGFAADSILEAIDAEIEVVVCITEGIPVLDMVKVKRALVG-SKTRLI 120

Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
           GPNCPGVI PGECKIGIMPG+IHK G IGIVSRSGTLTYEAV QTTAVGLGQSTCVGIGG
Sbjct: 121 GPNCPGVITPGECKIGIMPGHIHKRGTIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGG 180

Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
           DP NGTNFVDC+  F+ D +T+ II+IGEIGG AEEDAA  IK+S  +KPIV+FIAG+TA
Sbjct: 181 DPVNGTNFVDCIDMFLKDDETKAIIMIGEIGGNAEEDAAEFIKQSKIKKPIVSFIAGITA 240

Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
           PPG+RMGHAG         AI++GGKG+A+DK++ L+ AGVT+  SPA IG  M ++  +
Sbjct: 241 PPGKRMGHAG---------AIIAGGKGSAEDKLEALQSAGVTITRSPADIGKTMFDLLNK 291

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|Q1RH56|SUCD_RICBR Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia bellii (strain RML369-C) GN=sucD PE=3 SV=1

 Score =  416 bits (1068), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/299 (68%), Positives = 243/299 (81%), Gaps = 10/299 (3%)

Query: 36  AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
           A+ V+K T+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGG  HL LP++NTV EAK
Sbjct: 2   AILVNKKTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGKTHLDLPIYNTVHEAK 61

Query: 96  AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
           A+T ANAS IYVPPPFAA +ILEA++A +++VVCITEGIP  DMVRVK AL   S+TRL+
Sbjct: 62  AKTGANASVIYVPPPFAADSILEAIDAGIEIVVCITEGIPVLDMVRVKRALVG-SRTRLI 120

Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
           GPNCPG+I P ECKIGIMPG+IH+ G IGIVSRSGTLTYEAV QTTAVGLGQSTCVGIGG
Sbjct: 121 GPNCPGIITPDECKIGIMPGHIHRKGSIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGG 180

Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
           DP NGTNFVDC+  F+ D +T+ II+IGEIGG AEE+AA  IK S  +KPIV+FIAG+TA
Sbjct: 181 DPVNGTNFVDCIDMFLQDDETKAIIMIGEIGGDAEENAADFIKHSKIKKPIVSFIAGITA 240

Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 334
           PPG+RMGHAG         AI++GGKG+A+DK++ L+ AGVT+  SPA IG  ML++  
Sbjct: 241 PPGKRMGHAG---------AIIAGGKGSAEDKLEALQSAGVTITRSPADIGKTMLDLLN 290

Rickettsia bellii (strain RML369-C) (taxid: 336407)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|Q9AKE1|SUCD_RICTY Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=sucD PE=3 SV=1

 Score =  410 bits (1054), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/300 (67%), Positives = 244/300 (81%), Gaps = 10/300 (3%)

Query: 36  AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
           A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG  HL LPV+NTV EAK
Sbjct: 2   AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLNLPVYNTVHEAK 61

Query: 96  AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
           A+T ANAS IYVPP FAA +ILEA++A++++VVCITEGIP  DMV+VK AL   SKTRL+
Sbjct: 62  AKTDANASVIYVPPGFAADSILEAIDAKIEVVVCITEGIPVLDMVKVKRALIG-SKTRLI 120

Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
           GPNCPGVI PGECKIGIMPG+IHK G IGIVSRSGTLTYEAV QTTAVGLGQSTC+GIGG
Sbjct: 121 GPNCPGVITPGECKIGIMPGHIHKTGIIGIVSRSGTLTYEAVAQTTAVGLGQSTCIGIGG 180

Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
           DP NGT+FV+C+  F+ D +T+ II+IGEIGG AEEDAA  IK+S  +KPIV+FIAG+TA
Sbjct: 181 DPVNGTSFVECIEMFLQDDETKAIIMIGEIGGNAEEDAADFIKQSKIKKPIVSFIAGITA 240

Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
           P  +RMGHAG         AI+SGGKG+A+DK++ L+ AGVT+ +SPA IG  ML++  +
Sbjct: 241 PSDKRMGHAG---------AIISGGKGSAKDKLEALQSAGVTITKSPADIGKTMLDLLNK 291

Rickettsia typhi (strain ATCC VR-144 / Wilmington) (taxid: 257363)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|Q92I22|SUCD_RICCN Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=sucD PE=3 SV=1

 Score =  408 bits (1049), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/300 (68%), Positives = 241/300 (80%), Gaps = 10/300 (3%)

Query: 36  AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
           A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG  HL LPV+NTV EAK
Sbjct: 2   AILINKKTQVICQGFTGLQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLDLPVYNTVHEAK 61

Query: 96  AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
           A+T ANAS IYVPP FAA +ILEA++AE+++VVCITEGIP  DMV+VK AL   SKTRL+
Sbjct: 62  AKTGANASVIYVPPGFAADSILEAIDAEIEVVVCITEGIPVLDMVKVKRALVG-SKTRLI 120

Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
           GPNCPGVI PGECKIGIMPG+IHK G IGIVSRSGTLTYEAV QTTAVGLGQSTC+GIGG
Sbjct: 121 GPNCPGVITPGECKIGIMPGHIHKRGTIGIVSRSGTLTYEAVAQTTAVGLGQSTCIGIGG 180

Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
           DP NGTNFVDC+  F+ D +T+ II+IGEIGG AEEDAA  IK+S  +KPIV+FIAG+TA
Sbjct: 181 DPVNGTNFVDCIEMFLKDDETKAIIMIGEIGGNAEEDAAEFIKQSKIKKPIVSFIAGITA 240

Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
           PPG+RMGHAG         AI+ G  G+A+DK++ L+ AGV +  SPA IG  ML++  +
Sbjct: 241 PPGKRMGHAG---------AIIVGRTGSAEDKLEALQSAGVIITRSPADIGKTMLDLLNK 291

Rickettsia conorii (strain ATCC VR-613 / Malish 7) (taxid: 272944)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|O08371|SUCD_RICPR Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia prowazekii (strain Madrid E) GN=sucD PE=3 SV=1

 Score =  408 bits (1049), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/300 (67%), Positives = 242/300 (80%), Gaps = 10/300 (3%)

Query: 36  AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
           A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG  HL LPV+NTV EAK
Sbjct: 2   AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLNLPVYNTVHEAK 61

Query: 96  AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
           A+T ANAS IYVPP FAA +ILEA++A++++VVCITEGIP  DM++VK AL   SKTRL+
Sbjct: 62  AKTGANASVIYVPPGFAADSILEAIDAKIEVVVCITEGIPVLDMIKVKRALIG-SKTRLI 120

Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
           GPNCPGVI PGECKIGIMPG+IHK G IGIVSRSGTLTYEAV QTTA GLGQSTCVGIGG
Sbjct: 121 GPNCPGVITPGECKIGIMPGHIHKIGDIGIVSRSGTLTYEAVAQTTAAGLGQSTCVGIGG 180

Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
           DP NGT+FVDC+  F+ D +T+ II+IGEIGG+AEEDAA  IK+S  +KPIV+FIAG+TA
Sbjct: 181 DPVNGTSFVDCIEMFLQDDETKAIIMIGEIGGSAEEDAADFIKQSKIKKPIVSFIAGITA 240

Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
           P  +RMGHAG         AI+SGGKG+A+DK++ L+ AGV +  SPA IG  ML++  +
Sbjct: 241 PADKRMGHAG---------AIISGGKGSAEDKVEVLQSAGVIITRSPADIGKTMLDLLNK 291

Rickettsia prowazekii (strain Madrid E) (taxid: 272947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
TAIR|locus:2166756	341	AT5G23250 [Arabidopsis thalian	0.970	0.967	0.735	4e-129
UNIPROTKB|Q8GTQ9	332	SCOA "Succinyl-CoA ligase [ADP	0.861	0.882	0.814	2.8e-128
UNIPROTKB|Q6DQL1	337	Q6DQL1 "Succinyl-CoA ligase [A	0.861	0.869	0.804	4.2e-127
TAIR|locus:2150773	347	AT5G08300 [Arabidopsis thalian	0.908	0.890	0.761	7.8e-126
DICTYBASE|DDB_G0289325	315	scsA "succinate-CoA ligase (GD	0.855	0.923	0.626	8.2e-99
RGD|619821	346	Suclg1 "succinate-CoA ligase,	0.855	0.841	0.623	2.8e-98
MGI|MGI:1927234	346	Suclg1 "succinate-CoA ligase,	0.855	0.841	0.617	3.2e-97
UNIPROTKB|F1MZ38	346	SUCLG1 "Succinyl-CoA ligase [A	0.879	0.864	0.611	1.1e-96
UNIPROTKB|Q58DR8	346	SUCLG1 "Succinyl-CoA ligase [A	0.879	0.864	0.611	1.4e-96
UNIPROTKB|E2R0Y5	346	SUCLG1 "Uncharacterized protei	0.861	0.846	0.619	1.8e-96

TAIR|locus:2166756 AT5G23250 [Arabidopsis thaliana (taxid:3702)]

 Score = 1267 (451.1 bits), Expect = 4.0e-129, P = 4.0e-129
 Identities = 258/351 (73%), Positives = 276/351 (78%)

Query:     1 MARQVSSRVVRSLYMSSEICCG-----------QSRSFTTXXXXXXXVFVDKNTRVICQG 49
             M+RQV+ R++ SL  S   C G           QSRSF T       VFVDKNTRVICQG
Sbjct:     1 MSRQVT-RLLGSLRHSGGGCSGSSKVCSLTSLVQSRSFGTTPPPPAAVFVDKNTRVICQG 59

Query:    50 ITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP 109
             ITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEHLGLPVFNTVAEAKAETKANAS IYVP 
Sbjct:    60 ITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPA 119

Query:   110 PFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECK 169
             PF               +VCITEGIPQHDMVRVKAALN+QSKTRL+GPNCPG+IKPGECK
Sbjct:   120 PFAAAAIMEGLAAELDLIVCITEGIPQHDMVRVKAALNSQSKTRLIGPNCPGIIKPGECK 179

Query:   170 IGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTK 229
             IGIMPGYIHKPG+IGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDC+ K
Sbjct:   180 IGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEK 239

Query:   230 FIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGVDVY 289
             F  DPQT               DAAALIKE+GT+KP+VAFIAGLTAPPGRRMGHAG    
Sbjct:   240 FFVDPQTEGIVLIGEIGGTAEEDAAALIKENGTDKPVVAFIAGLTAPPGRRMGHAG---- 295

Query:   290 TIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGLTK 340
                  AIVSGGKGTAQDKIK+LR+AGV VVESPAKIGAAM E+F++RGL K
Sbjct:   296 -----AIVSGGKGTAQDKIKSLRDAGVKVVESPAKIGAAMFELFQERGLLK 341

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003878 "ATP citrate synthase activity" evidence=IEA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA

GO:0004776 "succinate-CoA ligase (GDP-forming) activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0005507 "copper ion binding" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

UNIPROTKB|Q8GTQ9 SCOA "Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial" [Solanum lycopersicum (taxid:4081)]

 Score = 1259 (448.2 bits), Expect = 2.8e-128, P = 2.8e-128
 Identities = 246/302 (81%), Positives = 255/302 (84%)

Query:    37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
             VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTV EAKA
Sbjct:    39 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVEEAKA 98

Query:    97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
             ETKANAS IYVPPPF               +VCITEGIPQHDMVRVKAAL  QS+TRL+G
Sbjct:    99 ETKANASVIYVPPPFAAAAIMEGLEAELDLIVCITEGIPQHDMVRVKAALKKQSRTRLIG 158

Query:   157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
             PNCPG+IKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD
Sbjct:   159 PNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 218

Query:   217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
             PFNGTNFVDC+ KFIADPQT               DAAALIKESGT+KP+VAFIAGLTAP
Sbjct:   219 PFNGTNFVDCLEKFIADPQTEGIVLIGEIGGTAEEDAAALIKESGTQKPVVAFIAGLTAP 278

Query:   277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQR 336
             PGRRMGHAG         AIVSGGKGTAQDKIK L+EAGVTV ESPAKIG +MLEVFKQR
Sbjct:   279 PGRRMGHAG---------AIVSGGKGTAQDKIKALKEAGVTVCESPAKIGVSMLEVFKQR 329

Query:   337 GL 338
             GL
Sbjct:   330 GL 331

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IDA

GO:0006104 "succinyl-CoA metabolic process" evidence=IDA

GO:0006105 "succinate metabolic process" evidence=IDA

UNIPROTKB|Q6DQL1 Q6DQL1 "Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial" [Solanum lycopersicum (taxid:4081)]

 Score = 1248 (444.4 bits), Expect = 4.2e-127, P = 4.2e-127
 Identities = 243/302 (80%), Positives = 253/302 (83%)

Query:    37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
             VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 
Sbjct:    44 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKV 103

Query:    97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
             ETKANAS +YVPPPF               VVCITEGIPQHDMVRVKAAL  Q +TRL+G
Sbjct:   104 ETKANASVVYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVRVKAALKKQLRTRLIG 163

Query:   157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
             PNCPG+IKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD
Sbjct:   164 PNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 223

Query:   217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
             PFNGTNFVDC+ +FIADPQT               DAAALIKESGT+KP+VAFIAGLTAP
Sbjct:   224 PFNGTNFVDCLERFIADPQTEGIVLIGEIGGTAEEDAAALIKESGTQKPVVAFIAGLTAP 283

Query:   277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQR 336
             PGRRMGHAG         AIVSGGKGTAQDKIK L+EAGVTV ESPAKIG  ML+VFKQR
Sbjct:   284 PGRRMGHAG---------AIVSGGKGTAQDKIKALKEAGVTVCESPAKIGVTMLDVFKQR 334

Query:   337 GL 338
             GL
Sbjct:   335 GL 336

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IDA

GO:0006104 "succinyl-CoA metabolic process" evidence=IDA

GO:0006105 "succinate metabolic process" evidence=IDA

TAIR|locus:2150773 AT5G08300 [Arabidopsis thaliana (taxid:3702)]

 Score = 1236 (440.2 bits), Expect = 7.8e-126, P = 7.8e-126
 Identities = 242/318 (76%), Positives = 259/318 (81%)

Query:    23 QSRSFTTXXXXXXXVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH 82
             QSRSF +       VFVDKNTRV+CQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEH
Sbjct:    38 QSRSFASDPHPPAAVFVDKNTRVLCQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEH 97

Query:    83 LGLPVFNTVAEAKAETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRV 142
             LGLPVFN+VAEAKA+TKANAS IYVP PF               +VCITEGIPQHDMVRV
Sbjct:    98 LGLPVFNSVAEAKADTKANASVIYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMVRV 157

Query:   143 KAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTA 202
             K ALN+QSKTRL+GPNCPG+IKPGECKIGIMPGYIHKPG+IGIVSRSGTLTYEAVFQTTA
Sbjct:   158 KHALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTA 217

Query:   203 VGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGT 262
             VGLGQSTCVGIGGDPFNGTNFVDC+ KF  DPQT               DAAALIK SGT
Sbjct:   218 VGLGQSTCVGIGGDPFNGTNFVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIKASGT 277

Query:   263 EKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESP 322
             EKP+VAFIAGLTAPPGRRMGHAG         AIVSGGKGTAQDKIK+L +AGV VVESP
Sbjct:   278 EKPVVAFIAGLTAPPGRRMGHAG---------AIVSGGKGTAQDKIKSLNDAGVKVVESP 328

Query:   323 AKIGAAMLEVFKQRGLTK 340
             AKIG+AM E+F++RGL K
Sbjct:   329 AKIGSAMYELFQERGLLK 346

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003878 "ATP citrate synthase activity" evidence=IEA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA

GO:0004776 "succinate-CoA ligase (GDP-forming) activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0046872 "metal ion binding" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

DICTYBASE|DDB_G0289325 scsA "succinate-CoA ligase (GDP-forming) alpha subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
 Identities = 188/300 (62%), Positives = 222/300 (74%)

Query:    37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
             V ++K+T+VICQG TG  GTFH++QAIEYGT MVGGV+P KGG +HL LPVFNTV EAK 
Sbjct:    22 VLINKHTKVICQGFTGNQGTFHSKQAIEYGTNMVGGVSPGKGGQKHLDLPVFNTVKEAKE 81

Query:    97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
              T ANA+ IYVPPP                VVCITEGIPQ DMV+VK  LN Q+KTRL+G
Sbjct:    82 ATGANATVIYVPPPHAAAAIKEAIDAEMELVVCITEGIPQQDMVKVKYLLNKQNKTRLIG 141

Query:   157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
             PNCPG+IKPGECKIGIMPG+IHKPG+IGIVSRSGTLTYEAV QTTAVGLGQSTC+GIGGD
Sbjct:   142 PNCPGIIKPGECKIGIMPGHIHKPGKIGIVSRSGTLTYEAVAQTTAVGLGQSTCIGIGGD 201

Query:   217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
             PFNGTNF+DC+  F  DPQT               +AA  + ++ T+KP+V+FIAGL+AP
Sbjct:   202 PFNGTNFIDCLKMFTQDPQTEGIILIGEIGGEAEEEAAQWLIDNPTDKPVVSFIAGLSAP 261

Query:   277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQR 336
             PGRRMGHAG         AI+SGGKG A  KI+ L+ AGVTV  SPAK+G  +L+   ++
Sbjct:   262 PGRRMGHAG---------AIISGGKGDANSKIEALKAAGVTVTFSPAKLGETILQKMNEK 312

GO:0016020 "membrane" evidence=IDA

GO:0006104 "succinyl-CoA metabolic process" evidence=TAS

GO:0004776 "succinate-CoA ligase (GDP-forming) activity" evidence=IEA;IDA

GO:0048037 "cofactor binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA

GO:0003878 "ATP citrate synthase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

RGD|619821 Suclg1 "succinate-CoA ligase, alpha subunit" [Rattus norvegicus (taxid:10116)]

 Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
 Identities = 189/303 (62%), Positives = 222/303 (73%)

Query:    37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
             +++DKNT+VICQG TGK GTFH++QA+EYGTK+VGG TP KGG +HLGLPVFNTV EAK 
Sbjct:    50 IYIDKNTKVICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGKKHLGLPVFNTVKEAKE 109

Query:    97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
             +T A AS IYVPPPF               VVCITEGIPQ DMVRVK  L  Q KTRL+G
Sbjct:   110 KTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHKLTRQGKTRLIG 169

Query:   157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
             PNCPG+I PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS C+GIGGD
Sbjct:   170 PNCPGIINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCIGIGGD 229

Query:   217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKE--SGTE-KPIVAFIAGL 273
             PFNGTNF+DC+  F+ DP T               +AA  +KE  SG + KP+V+FIAG+
Sbjct:   230 PFNGTNFIDCLDVFLKDPATEGIVLIGEIGGHAEENAAEFLKEHNSGPKAKPVVSFIAGI 289

Query:   274 TAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 333
             TAPPGRRMGHAG         AI++GGKG A++KI  L+ AGV V  SPA++G  M + F
Sbjct:   290 TAPPGRRMGHAG---------AIIAGGKGGAKEKISALQSAGVIVSMSPAQLGTCMYKEF 340

Query:   334 KQR 336
             ++R
Sbjct:   341 EKR 343

GO:0003878 "ATP citrate synthase activity" evidence=IEA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IDA

GO:0004776 "succinate-CoA ligase (GDP-forming) activity" evidence=IDA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006099 "tricarboxylic acid cycle" evidence=IEA;IDA

GO:0006104 "succinyl-CoA metabolic process" evidence=IDA

GO:0006105 "succinate metabolic process" evidence=IDA

GO:0019003 "GDP binding" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0045244 "succinate-CoA ligase complex (GDP-forming)" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IDA

GO:0048037 "cofactor binding" evidence=IEA

MGI|MGI:1927234 Suclg1 "succinate-CoA ligase, GDP-forming, alpha subunit" [Mus musculus (taxid:10090)]

 Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
 Identities = 187/303 (61%), Positives = 222/303 (73%)

Query:    37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
             +++DKNT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG +HLGLPVFNTV EAK 
Sbjct:    50 IYIDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQKHLGLPVFNTVKEAKE 109

Query:    97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
             +T A AS IYVPPPF               VVCITEGIPQ DMVRVK  L  Q  TRL+G
Sbjct:   110 KTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHRLTRQGTTRLIG 169

Query:   157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
             PNCPGVI PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS C+GIGGD
Sbjct:   170 PNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCIGIGGD 229

Query:   217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKE--SGTE-KPIVAFIAGL 273
             PFNGT+F+DC+  F+ DP T               +AAA +KE  SG + KP+V+FIAG+
Sbjct:   230 PFNGTDFIDCLEVFLNDPATEGIILIGEIGGHAEENAAAFLKEHNSGPKAKPVVSFIAGI 289

Query:   274 TAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 333
             TAPPGRRMGHAG         AI++GGKG A++KI  L+ AGV V  SPA++G  + + F
Sbjct:   290 TAPPGRRMGHAG---------AIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEF 340

Query:   334 KQR 336
             ++R
Sbjct:   341 EKR 343

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003878 "ATP citrate synthase activity" evidence=IEA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=ISO

GO:0004776 "succinate-CoA ligase (GDP-forming) activity" evidence=ISO

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006099 "tricarboxylic acid cycle" evidence=ISO

GO:0006104 "succinyl-CoA metabolic process" evidence=ISO

GO:0006105 "succinate metabolic process" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0019003 "GDP binding" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045244 "succinate-CoA ligase complex (GDP-forming)" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0048037 "cofactor binding" evidence=IEA

UNIPROTKB|F1MZ38 SUCLG1 "Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
 Identities = 192/314 (61%), Positives = 224/314 (71%)

Query:    26 SFTTXXXXXXXVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGL 85
             S+TT       ++VD+NT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG  HLGL
Sbjct:    42 SYTTSRKH---LYVDRNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGKTHLGL 98

Query:    86 PVFNTVAEAKAETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAA 145
             PVFNTV EAK +T A AS IYVPPPF               VVCITEGIPQ DMVRVK  
Sbjct:    99 PVFNTVKEAKEQTGATASVIYVPPPFAAAAIDEAIEAEVSLVVCITEGIPQQDMVRVKHK 158

Query:   146 LNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGL 205
             L  Q KTRLVGPNCPGVI PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGL
Sbjct:   159 LLRQGKTRLVGPNCPGVINPGECKIGIMPGHIHKKGRVGIVSRSGTLTYEAVHQTTQVGL 218

Query:   206 GQSTCVGIGGDPFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKE--SGTE 263
             GQS CVGIGGDPFNGT+F DC+  F+ DP T               +AA  +K+  SG +
Sbjct:   219 GQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPK 278

Query:   264 -KPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESP 322
              KP+V+FIAGLTAPPGRRMGHAG         AI++GGKG A++KI  L+ AGV V  SP
Sbjct:   279 AKPVVSFIAGLTAPPGRRMGHAG---------AIIAGGKGGAKEKIAALQSAGVVVSMSP 329

Query:   323 AKIGAAMLEVFKQR 336
             A++G  M + F++R
Sbjct:   330 AQLGTTMYKEFEKR 343

GO:0005886 "plasma membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA

GO:0003878 "ATP citrate synthase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q58DR8 SUCLG1 "Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 960 (343.0 bits), Expect = 1.4e-96, P = 1.4e-96
 Identities = 192/314 (61%), Positives = 224/314 (71%)

Query:    26 SFTTXXXXXXXVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGL 85
             S+TT       ++VD+NT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG  HLGL
Sbjct:    42 SYTTSRKH---LYVDRNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGKTHLGL 98

Query:    86 PVFNTVAEAKAETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAA 145
             PVFNTV EAK +T A AS IYVPPPF               VVCITEGIPQ DMVRVK  
Sbjct:    99 PVFNTVKEAKEQTGATASVIYVPPPFAVAAIDEAIEAEVSLVVCITEGIPQQDMVRVKHK 158

Query:   146 LNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGL 205
             L  Q KTRLVGPNCPGVI PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGL
Sbjct:   159 LLRQGKTRLVGPNCPGVINPGECKIGIMPGHIHKKGRVGIVSRSGTLTYEAVHQTTQVGL 218

Query:   206 GQSTCVGIGGDPFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKE--SGTE 263
             GQS CVGIGGDPFNGT+F DC+  F+ DP T               +AA  +K+  SG +
Sbjct:   219 GQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPK 278

Query:   264 -KPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESP 322
              KP+V+FIAGLTAPPGRRMGHAG         AI++GGKG A++KI  L+ AGV V  SP
Sbjct:   279 AKPVVSFIAGLTAPPGRRMGHAG---------AIIAGGKGGAKEKIAALQSAGVVVSMSP 329

Query:   323 AKIGAAMLEVFKQR 336
             A++G  M + F++R
Sbjct:   330 AQLGTTMYKEFEKR 343

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004776 "succinate-CoA ligase (GDP-forming) activity" evidence=IEA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0003878 "ATP citrate synthase activity" evidence=IEA

UNIPROTKB|E2R0Y5 SUCLG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 959 (342.6 bits), Expect = 1.8e-96, P = 1.8e-96
 Identities = 189/305 (61%), Positives = 222/305 (72%)

Query:    37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
             ++VDKNT+VICQG TGK GTFH++QA++YGT++VGG TP KGG  HLGLPVFNTV EAK 
Sbjct:    50 LYVDKNTKVICQGFTGKQGTFHSQQALDYGTQLVGGTTPGKGGKTHLGLPVFNTVKEAKE 109

Query:    97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
             ET A AS IYVPPPF               VVCITEGIPQ DMVRVK  L  Q KTRL+G
Sbjct:   110 ETGATASVIYVPPPFAAAAINEAVEAEVPLVVCITEGIPQQDMVRVKHKLLRQGKTRLIG 169

Query:   157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
             PNCPG+I PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS CVGIGGD
Sbjct:   170 PNCPGIINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGD 229

Query:   217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKE--SGTE-KPIVAFIAGL 273
             PFNGT+F+DC+  F+ DP T               +AA  +K+  SG + KP+V+FIAGL
Sbjct:   230 PFNGTDFIDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKAKPVVSFIAGL 289

Query:   274 TAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 333
             TAPPGRRMGHAG         AI++GGKG A++KI  L+ AGV V  SPA++G  + + F
Sbjct:   290 TAPPGRRMGHAG---------AIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEF 340

Query:   334 KQRGL 338
             ++R L
Sbjct:   341 EKRKL 345

GO:0005886 "plasma membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA

GO:0003878 "ATP citrate synthase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P68209	SUCA1_ARATH	6, ., 2, ., 1, ., 5	0.7837	0.9705	0.9510	no	no
Q9WUM5	SUCA_MOUSE	6, ., 2, ., 1, ., 5	0.6819	0.8617	0.8468	yes	no
Q1RH56	SUCD_RICBR	6, ., 2, ., 1, ., 5	0.6856	0.85	0.9931	yes	no
Q8CPH4	SUCD_STAES	6, ., 2, ., 1, ., 5	0.5973	0.8588	0.9668	yes	no
O08371	SUCD_RICPR	6, ., 2, ., 1, ., 5	0.6733	0.8529	0.9931	yes	no
P80865	SUCD_BACSU	6, ., 2, ., 1, ., 5	0.6336	0.8588	0.9733	yes	no
Q6ZL94	SUCA_ORYSJ	6, ., 2, ., 1, ., 5	0.8823	0.8735	0.8972	yes	no
Q8GTQ9	SUCA1_SOLLC	6, ., 2, ., 1, ., 5	0.8304	0.9617	0.9849	N/A	no
Q51567	SUCD_PSEAE	6, ., 2, ., 1, ., 5	0.6397	0.8411	0.9694	yes	no
Q8NX01	SUCD_STAAW	6, ., 2, ., 1, ., 5	0.6138	0.8588	0.9668	yes	no
Q5HPU4	SUCD_STAEQ	6, ., 2, ., 1, ., 5	0.6006	0.8588	0.9668	yes	no
Q9YGD2	SUCA_COLLI	6, ., 2, ., 1, ., 5	0.6819	0.8617	0.9575	N/A	no
Q6DQL1	SUCA2_SOLLC	6, ., 2, ., 1, ., 5	0.8270	0.9617	0.9703	N/A	no
P0AGE9	SUCD_ECOLI	6, ., 2, ., 1, ., 5	0.6421	0.8470	0.9965	N/A	no
O19069	SUCA_PIG	6, ., 2, ., 1, ., 5	0.6885	0.8617	0.8468	yes	no
P53400	SUCA2_TRIVA	6, ., 2, ., 1, ., 4	0.5718	0.8588	0.9449	N/A	no
P53401	SUCA3_TRIVA	6, ., 2, ., 1, ., 4	0.5686	0.8588	0.9449	N/A	no
P66866	SUCD_STAAM	6, ., 2, ., 1, ., 5	0.6138	0.8588	0.9668	yes	no
O13750	SUCA_SCHPO	6, ., 2, ., 1, ., 5	0.6279	0.8470	0.8700	yes	no
P53596	SUCA_CAEEL	6, ., 2, ., 1, ., 5	0.6744	0.8411	0.8881	yes	no
Q8LAD2	SUCA2_ARATH	6, ., 2, ., 1, ., 5	0.8710	0.9088	0.9061	yes	no
Q7U0Z0	SUCD_MYCBO	6, ., 2, ., 1, ., 5	0.4707	0.8411	0.9438	yes	no
P13086	SUCA_RAT	6, ., 2, ., 1, ., 5	0.6852	0.8617	0.8468	yes	no
P53597	SUCA_HUMAN	6, ., 2, ., 1, ., 5	0.6885	0.8617	0.8468	yes	no
P71558	SUCD_MYCTU	6, ., 2, ., 1, ., 5	0.4707	0.8411	0.9438	yes	no
Q5HGI6	SUCD_STAAC	6, ., 2, ., 1, ., 5	0.6138	0.8588	0.9668	yes	no
Q58DR8	SUCA_BOVIN	6, ., 2, ., 1, ., 5	0.6740	0.8852	0.8699	yes	no
Q92I22	SUCD_RICCN	6, ., 2, ., 1, ., 5	0.68	0.8529	0.9931	yes	no
O26663	SUCD_METTH	6, ., 2, ., 1, ., 5	0.5363	0.8117	0.9419	yes	no
P45102	SUCD_HAEIN	6, ., 2, ., 1, ., 5	0.6153	0.8470	0.9829	yes	no
P53598	SUCA_YEAST	6, ., 2, ., 1, ., 5	0.5427	0.8470	0.8753	yes	no
O28098	SUCD2_ARCFU	6, ., 2, ., 1, ., 5	0.5268	0.8411	0.9965	yes	no
Q6GHI9	SUCD_STAAR	6, ., 2, ., 1, ., 5	0.6138	0.8588	0.9668	yes	no
P53591	SUCD_COXBU	6, ., 2, ., 1, ., 5	0.625	0.8411	0.9727	yes	no
P09143	SUCD_THETH	6, ., 2, ., 1, ., 5	0.5259	0.8176	0.9652	yes	no
Q9P727	SUCA_NEUCR	6, ., 2, ., 1, ., 5	0.6168	0.8970	0.9159	N/A	no
P36967	SUCA_DICDI	6, ., 2, ., 1, ., 5	0.6923	0.8794	0.9492	yes	no
Q4ULQ8	SUCD_RICFE	6, ., 2, ., 1, ., 5	0.69	0.8529	0.9931	yes	no
Q9AKE1	SUCD_RICTY	6, ., 2, ., 1, ., 5	0.6766	0.8529	0.9931	yes	no
P0AGF0	SUCD_ECOL6	6, ., 2, ., 1, ., 5	0.6421	0.8470	0.9965	yes	no
P0AGF1	SUCD_ECO57	6, ., 2, ., 1, ., 5	0.6421	0.8470	0.9965	N/A	no
O67547	SUCD_AQUAE	6, ., 2, ., 1, ., 5	0.5766	0.85	0.9475	yes	no
Q6G9W7	SUCD_STAAS	6, ., 2, ., 1, ., 5	0.6138	0.8588	0.9668	yes	no
Q58643	SUCD_METJA	6, ., 2, ., 1, ., 5	0.4948	0.8147	0.9421	yes	no
P99070	SUCD_STAAN	6, ., 2, ., 1, ., 5	0.6138	0.8588	0.9668	yes	no
P53399	SUCA1_TRIVA	6, ., 2, ., 1, ., 4	0.5718	0.8588	0.9449	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.998
4th Layer	6.2.1.5	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	340
PLN00125	300	PLN00125, PLN00125, Succinyl-CoA ligase [GDP-formi	0.0
PTZ00187	317	PTZ00187, PTZ00187, succinyl-CoA synthetase alpha	0.0
PRK05678	291	PRK05678, PRK05678, succinyl-CoA synthetase subuni	0.0
COG0074	293	COG0074, SucD, Succinyl-CoA synthetase, alpha subu	1e-165
TIGR01019	286	TIGR01019, sucCoAalpha, succinyl-CoA synthetase, a	1e-158
pfam02629	96	pfam02629, CoA_binding, CoA binding domain	4e-33
pfam00549	128	pfam00549, Ligase_CoA, CoA-ligase	2e-32
smart00881	100	smart00881, CoA_binding, CoA binding domain	6e-31
PLN02522	608	PLN02522, PLN02522, ATP citrate (pro-S)-lyase	1e-28
COG1042	598	COG1042, COG1042, Acyl-CoA synthetase (NDP forming	8e-09
TIGR02717	447	TIGR02717, AcCoA-syn-alpha, acetyl coenzyme A synt	3e-08
pfam13607	138	pfam13607, Succ_CoA_lig, Succinyl-CoA ligase like	1e-07
PRK06091	555	PRK06091, PRK06091, membrane protein FdrA; Validat	7e-04
cd07022	214	cd07022, S49_Sppa_36K_type, Signal peptide peptida	0.002

>gnl|CDD|215066 PLN00125, PLN00125, Succinyl-CoA ligase [GDP-forming] subunit alpha

 Score =  542 bits (1397), Expect = 0.0
 Identities = 283/308 (91%), Positives = 289/308 (93%), Gaps = 9/308 (2%)

Query: 31  PPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT 90
             P PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT
Sbjct: 1   ASPPPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT 60

Query: 91  VAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQS 150
           VAEAKAETKANAS IYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALN QS
Sbjct: 61  VAEAKAETKANASVIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQS 120

Query: 151 KTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTC 210
           KTRL+GPNCPG+IKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTC
Sbjct: 121 KTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTC 180

Query: 211 VGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFI 270
           VGIGGDPFNGTNFVDC+ KF+ DPQTEGIILIGEIGGTAEEDAAA IKESGTEKP+VAFI
Sbjct: 181 VGIGGDPFNGTNFVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGTEKPVVAFI 240

Query: 271 AGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAML 330
           AGLTAPPGRRMGHAG         AIVSGGKGTAQDKIK LREAGVTVVESPAKIG AML
Sbjct: 241 AGLTAPPGRRMGHAG---------AIVSGGKGTAQDKIKALREAGVTVVESPAKIGVAML 291

Query: 331 EVFKQRGL 338
           EVFK+RGL
Sbjct: 292 EVFKERGL 299

Length = 300

>gnl|CDD|240307 PTZ00187, PTZ00187, succinyl-CoA synthetase alpha subunit; Provisional

 Score =  533 bits (1375), Expect = 0.0
 Identities = 232/318 (72%), Positives = 267/318 (83%), Gaps = 15/318 (4%)

Query: 22  GQSRSFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE 81
            ++RS T+AP     V+V+KNT+VICQGITGK GTFHTEQAIEYGTKMVGGV PKK GT 
Sbjct: 13  FRARSSTSAP----RVWVNKNTKVICQGITGKQGTFHTEQAIEYGTKMVGGVNPKKAGTT 68

Query: 82  HL--GLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDM 139
           HL  GLPVF TV EAK  T A+AS IYVPPP AA+AI+EA+EAE+ LVVCITEGIPQHDM
Sbjct: 69  HLKHGLPVFATVKEAKKATGADASVIYVPPPHAASAIIEAIEAEIPLVVCITEGIPQHDM 128

Query: 140 VRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQ 199
           V+VK AL +Q+KTRL+GPNCPG+IKPGECKIGIMPG+IHK G+IGIVSRSGTLTYEAV Q
Sbjct: 129 VKVKHALLSQNKTRLIGPNCPGIIKPGECKIGIMPGHIHKKGKIGIVSRSGTLTYEAVAQ 188

Query: 200 TTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKE 259
           TTAVGLGQSTCVGIGGDPFNGTNF+DC+  F+ DP+TEGIILIGEIGGTAEE+AA  IK 
Sbjct: 189 TTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKN 248

Query: 260 SGTEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVV 319
           +  +KP+V+FIAG+TAPPGRRMGHAG         AI+SGGKGTA  KI+ L  AGV VV
Sbjct: 249 NPIKKPVVSFIAGITAPPGRRMGHAG---------AIISGGKGTAPGKIEALEAAGVRVV 299

Query: 320 ESPAKIGAAMLEVFKQRG 337
           +SPA++G  MLEV K++G
Sbjct: 300 KSPAQLGKTMLEVMKKKG 317

Length = 317

>gnl|CDD|180194 PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated

 Score =  503 bits (1299), Expect = 0.0
 Identities = 197/301 (65%), Positives = 237/301 (78%), Gaps = 11/301 (3%)

Query: 36  AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
           ++ ++K+T+VI QGITGK GTFHTEQ + YGT +VGGVTP KGGT  LGLPVFNTVAEA 
Sbjct: 2   SILINKDTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAV 61

Query: 96  AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
             T ANAS IYVPPPFAA AILEA++A +DL+VCITEGIP  DM+ VKA L  + KTRL+
Sbjct: 62  EATGANASVIYVPPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLE-RKKTRLI 120

Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
           GPNCPG+I PGECKIGIMPG+IHK GR+G+VSRSGTLTYEAV Q T +G GQSTCVGIGG
Sbjct: 121 GPNCPGIITPGECKIGIMPGHIHKKGRVGVVSRSGTLTYEAVAQLTDLGFGQSTCVGIGG 180

Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
           DP NGTNF+D +  F  DP+TE I++IGEIGG+AEE+AA  IK + T KP+V +IAG+TA
Sbjct: 181 DPINGTNFIDVLEAFEEDPETEAIVMIGEIGGSAEEEAAEYIKANVT-KPVVGYIAGVTA 239

Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
           PPG+RMGHAG         AI+SGGKGTA++K + L  AGV V  +P++IG  + EV K 
Sbjct: 240 PPGKRMGHAG---------AIISGGKGTAEEKKEALEAAGVKVARTPSEIGELLKEVLKG 290

Query: 336 R 336
            
Sbjct: 291 L 291

Length = 291

>gnl|CDD|223152 COG0074, SucD, Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

 Score =  460 bits (1187), Expect = e-165
 Identities = 195/302 (64%), Positives = 230/302 (76%), Gaps = 10/302 (3%)

Query: 36  AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
           ++ ++K+T+VI QGITGK GTFHTEQ + YGTK+VGGVTP KGG   LGLPVFNTV EA 
Sbjct: 2   SILLNKDTKVIVQGITGKQGTFHTEQMLAYGTKIVGGVTPGKGGQTILGLPVFNTVEEAV 61

Query: 96  AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
            ET ANAS I+VPPPFAA AILEA++A + LVV ITEGIP  DM+ +K     +  TRL+
Sbjct: 62  KETGANASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAR-EKGTRLI 120

Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
           GPNCPG+I PGECKIGIMPG I+KPG IGIVSRSGTLTYEAV Q T  GLGQST +GIGG
Sbjct: 121 GPNCPGIITPGECKIGIMPGNIYKPGNIGIVSRSGTLTYEAVSQLTEAGLGQSTAIGIGG 180

Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
           DP  GT+F+D +  F ADP+TE I++IGEIGG AEE+AA  IK + T KP+VA+IAG TA
Sbjct: 181 DPIPGTSFIDALEMFEADPETEAIVMIGEIGGPAEEEAAEYIKANATRKPVVAYIAGRTA 240

Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
           P G+RMGHAG         AIVSGGKGTA+ KI  L  AGV V E+PA++G  +LEV K 
Sbjct: 241 PEGKRMGHAG---------AIVSGGKGTAESKIAALEAAGVKVAETPAELGELLLEVLKG 291

Query: 336 RG 337
           R 
Sbjct: 292 RQ 293

Length = 293

>gnl|CDD|130091 TIGR01019, sucCoAalpha, succinyl-CoA synthetase, alpha subunit

 Score =  444 bits (1144), Expect = e-158
 Identities = 191/296 (64%), Positives = 233/296 (78%), Gaps = 11/296 (3%)

Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + +DK+T+VI QGITG  G+FHTEQ + YGT +VGGVTP KGGT  LGLPVF++V EA  
Sbjct: 1   ILLDKDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVE 60

Query: 97  ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
           ET ANAS I+VP PFAA AI EA++A ++L+VCITEGIP HDM++VK  +   S TRL+G
Sbjct: 61  ETGANASVIFVPAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEE-SGTRLIG 119

Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PNCPG+I PGECKIGIMPG+IHKPG +GIVSRSGTLTYEAV Q T  G GQSTCVGIGGD
Sbjct: 120 PNCPGIITPGECKIGIMPGHIHKPGNVGIVSRSGTLTYEAVHQLTKAGFGQSTCVGIGGD 179

Query: 217 PFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAP 276
           P NGT+F+D +  F  DP+TE I++IGEIGG+AEE+AA  IK++ + KP+V FIAG TAP
Sbjct: 180 PVNGTSFIDVLEAFEKDPETEAIVMIGEIGGSAEEEAADFIKQNMS-KPVVGFIAGATAP 238

Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEV 332
           PG+RMGHAG         AI+SGGKGTA+ KI+ L  AGVTVV+SP+ IG  + E+
Sbjct: 239 PGKRMGHAG---------AIISGGKGTAESKIEALEAAGVTVVKSPSDIGELLAEI 285

This model describes succinyl-CoA synthetase alpha subunits but does not discriminate between GTP-specific and ATP-specific reactions. The model is designated as subfamily rather than equivalog for that reason. ATP citrate lyases appear to form an outgroup [Energy metabolism, TCA cycle]. Length = 286

>gnl|CDD|202320 pfam02629, CoA_binding, CoA binding domain

 Score =  118 bits (297), Expect = 4e-33
 Identities = 42/96 (43%), Positives = 58/96 (60%), Gaps = 2/96 (2%)

Query: 40  DKNTRVICQGITGKN--GTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAE 97
           DK+T+V   G  G    G +H  Q + YG KMV GV P+KGGTE  G+PV+ +V E + +
Sbjct: 1   DKDTKVAVIGAGGLGIQGLYHFIQLLGYGIKMVFGVNPRKGGTEVGGIPVYKSVDELEED 60

Query: 98  TKANASAIYVPPPFAAAAILEAMEAELDLVVCITEG 133
           T  + + I VP PFA  AI E ++A +  +V IT G
Sbjct: 61  TGVDVAVITVPAPFAQEAIDELVDAGIKGIVNITPG 96

This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases. Length = 96

>gnl|CDD|215988 pfam00549, Ligase_CoA, CoA-ligase

 Score =  116 bits (294), Expect = 2e-32
 Identities = 40/136 (29%), Positives = 56/136 (41%), Gaps = 14/136 (10%)

Query: 186 VSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEI 245
           +   GTL  EA+      G G    + +GGD F  T  +D +    ADP+ + I+L   +
Sbjct: 1   LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL 60

Query: 246 G-GTAEEDAAALIKE----SGTEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGG 300
           G G  E+ A  L+K        E P+VA + G  A P  R   A          A+   G
Sbjct: 61  GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGREEQAK---------ALAESG 111

Query: 301 KGTAQDKIKTLREAGV 316
              A    + LR AG 
Sbjct: 112 VLIASSNNQALRAAGA 127

This family includes the CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate CoA ligase and ATP-citrate lyase. Some members of the family utilise ATP others use GTP. Length = 128

>gnl|CDD|214881 smart00881, CoA_binding, CoA binding domain

 Score =  112 bits (282), Expect = 6e-31
 Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 3/100 (3%)

Query: 38  FVDKNTRVICQGITGKNGTFHTEQAI---EYGTKMVGGVTPKKGGTEHLGLPVFNTVAEA 94
            ++ NT V   G +G  G+F         EYGTK VGGV P K G +  G+PV+++VAEA
Sbjct: 1   LLNPNTSVAVVGASGNLGSFGLAVMRNLLEYGTKFVGGVYPGKVGPKVDGVPVYDSVAEA 60

Query: 95  KAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGI 134
             ET  + + I+VP   A  AI EA+EA +  +V ITEGI
Sbjct: 61  PEETGVDVAVIFVPAEAAPDAIDEAIEAGIKGIVVITEGI 100

This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases. Length = 100

>gnl|CDD|178137 PLN02522, PLN02522, ATP citrate (pro-S)-lyase

 Score =  116 bits (291), Expect = 1e-28
 Identities = 83/270 (30%), Positives = 132/270 (48%), Gaps = 23/270 (8%)

Query: 79  GTEHLGLPVFNTVAEA-KAETKANASAIYVPPPFAAAAILEAMEAE-LDLVVCITEGIPQ 136
           G E + +PV  ++  A KA   A+    +     AAA+ +EA++   + +V  I EG+P+
Sbjct: 57  GQEEIAIPVHGSIEAACKAHPTADVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPE 116

Query: 137 HDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYI--------HKPGRIGIVSR 188
            D  ++ A     +K  ++GP   G I+ G  KIG   G +        ++PG +G VS+
Sbjct: 117 SDTKQLIAYARANNKV-VIGPATVGGIQAGAFKIGDTAGTLDNIIQCKLYRPGSVGFVSK 175

Query: 189 SGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGT 248
           SG ++ E       V  G    + IGGD F G+   D V +F   PQ + I+++GE+GG 
Sbjct: 176 SGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGR 235

Query: 249 AEEDAAALIKESGTEKPIVAFIAGLTA---PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQ 305
            E      +K+    KP+VA+++G  A       + GHAG         A   G   +AQ
Sbjct: 236 DEYSLVEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAG---------AKSGGDMESAQ 286

Query: 306 DKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
            K K L++AG  V  S   + AA+ E F++
Sbjct: 287 AKNKALKDAGAIVPTSFEALEAAIKETFEK 316

Length = 608

>gnl|CDD|223972 COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion]

 Score = 56.6 bits (137), Expect = 8e-09
 Identities = 63/270 (23%), Positives = 104/270 (38%), Gaps = 34/270 (12%)

Query: 63  IEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEA 122
           +EYG   +  V PK    E LG+  + +VA+       + + I VP       + E  E 
Sbjct: 34  LEYGQGKIYPVNPKYD--EVLGVKAYTSVADLPDA--PDLAVIVVPAKVVPEIVHELGEK 89

Query: 123 ELDLVVCITEGIPQ-----HDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIM---- 173
            +   + I+ G  +      ++ +       +   R++GPNC G+I P    IG+     
Sbjct: 90  GVKGAIVISAGFREAGEEGMELEKELVEAARKYGMRIIGPNCLGLINP---IIGLNATFD 146

Query: 174 PGYIH-KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIA 232
           P +   + G    VS+SG +++  +      G+G S  V +G          D +     
Sbjct: 147 PVFGLGRGGGGAFVSQSGAVSFAILDWANEDGMGFSIKVSLGNAADRD--ESDLLEYLAD 204

Query: 233 DPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRM-GHAGVDVYTI 291
           DP+T+ I L  E      +   A        KPI+A  AG +    +    H G    ++
Sbjct: 205 DPRTKAIGLYIEGVKDGRKFLNAARAAERK-KPIIALKAGRSEAGAKAAASHTG----SL 259

Query: 292 FGSAIVSGGKGTAQDKIKTLREAGVTVVES 321
            GS                 ++AGV  VES
Sbjct: 260 AGSDEAYDA---------AFKQAGVIRVES 280

Length = 598

>gnl|CDD|131764 TIGR02717, AcCoA-syn-alpha, acetyl coenzyme A synthetase (ADP forming), alpha domain

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 56/218 (25%), Positives = 86/218 (39%), Gaps = 13/218 (5%)

Query: 63  IEYGTK-MVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAME 121
           IE G K  +  V PK G  E LG+  + +V E       + + I VP  +    + E  E
Sbjct: 31  IEGGYKGKIYPVNPKAG--EILGVKAYPSVLEIPDPV--DLAVIVVPAKYVPQVVEECGE 86

Query: 122 AELDLVVCITEG-----IPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGY 176
             +   V IT G         ++ +    +  +   RL+GPNC G+I             
Sbjct: 87  KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGPNCLGIINTHIKLNATFAPT 146

Query: 177 IHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQT 236
           + K G I  +S+SG L    +      G+G S  V +G       +  D +     DP T
Sbjct: 147 MPKKGGIAFISQSGALLTALLDWAEKNGVGFSYFVSLGNKA--DIDESDLLEYLADDPDT 204

Query: 237 EGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLT 274
           + I+L  E G           +E   +KPIV   +G +
Sbjct: 205 KVILLYLE-GIKDGRKFLKTAREISKKKPIVVLKSGTS 241

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference , one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. Length = 447

>gnl|CDD|205785 pfam13607, Succ_CoA_lig, Succinyl-CoA ligase like flavodoxin domain

 Score = 50.1 bits (121), Expect = 1e-07
 Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 35/153 (22%)

Query: 180 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNG--TNFVDCVTKFIADPQTE 237
           PG + +VS+SG L    +      G+G S  V +G    N    +F D +     DP+T 
Sbjct: 1   PGGVALVSQSGALGAALLDWAARRGIGFSHFVSLG----NEADVDFADLLDYLADDPETR 56

Query: 238 GIIL-IGEIGGTAEEDAAALI---KESGTEKPIVAFIAGLTAPPGRRMG--HAG--VDVY 289
            I+L +  I      D    +   + +  +KP+V   +G +   G R    H G      
Sbjct: 57  VILLYLEGIR-----DGRRFLRAARRAARKKPVVVLKSGRS-EAGARAAASHTGALAGSD 110

Query: 290 TIFGSAIVSGGKGTAQDKIKTLREAGVTVVESP 322
            ++ +A                R+AGV  V+  
Sbjct: 111 AVYDAA---------------FRQAGVIRVDDL 128

This domain contains the catalytic domain from Succinyl-CoA ligase alpha subunit and other related enzymes. A conserved histidine is involved in phosphoryl transfer. Length = 138

>gnl|CDD|180395 PRK06091, PRK06091, membrane protein FdrA; Validated

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 21/192 (10%)

Query: 100 ANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV-GPN 158
           AN + I V   +AA    +A++  L+ V+  ++ +   D +R+K     + K  LV GP+
Sbjct: 118 ANLALISVAGEYAAELAEQALDRNLN-VMMFSDNVTLEDEIRLKT--RAREKGLLVMGPD 174

Query: 159 CPGVIKPGECKIGIMP---GYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
           C      G   I   P     +   G IG++  SGT   E   Q    G G +  +G+GG
Sbjct: 175 C------GTAMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGG 228

Query: 216 DPFN----GTNFVDCVTKFIADPQTEGIILIGEIGGTA-EEDAAALIKESGTEKPIVAFI 270
              +    G + +  +    AD ++E I  + +    A        +K +G  KP+VA  
Sbjct: 229 RDLSAEVGGISALTALEMLSADEKSEVIAFVSKPPAEAVRLKIINAMKATG--KPVVALF 286

Query: 271 AGLTAPPGRRMG 282
            G T P   R  
Sbjct: 287 LGYT-PAVARDE 297

Length = 555

>gnl|CDD|132933 cd07022, S49_Sppa_36K_type, Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 7/50 (14%)

Query: 231 IADPQTEGIILI-----GEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
           +ADP    I+L      GE+ G  E   A  I+ +   KPIVAF+ GL A
Sbjct: 38  LADPDVRAIVLDIDSPGGEVAGVFE--LADAIRAARAGKPIVAFVNGLAA 85

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. Length = 214

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	340
PTZ00187	317	succinyl-CoA synthetase alpha subunit; Provisional	100.0
PLN00125	300	Succinyl-CoA ligase [GDP-forming] subunit alpha	100.0
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	100.0
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	100.0
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	100.0
COG0074	293	SucD Succinyl-CoA synthetase, alpha subunit [Energ	100.0
KOG1255	329	consensus Succinyl-CoA synthetase, alpha subunit [	100.0
PLN02522	608	ATP citrate (pro-S)-lyase	100.0
COG1042	598	Acyl-CoA synthetase (NDP forming) [Energy producti	100.0
PRK06091	555	membrane protein FdrA; Validated	100.0
PF13607	138	Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin	100.0
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	99.9
COG1832	140	Predicted CoA-binding protein [General function pr	99.78
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	99.53
KOG1254	600	consensus ATP-citrate lyase [Energy production and	99.47
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	99.42
TIGR00036	266	dapB dihydrodipicolinate reductase.	99.28
PLN02775	286	Probable dihydrodipicolinate reductase	99.21
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	99.21
COG2344	211	AT-rich DNA-binding protein [General function pred	99.21
PRK00048	257	dihydrodipicolinate reductase; Provisional	99.08
TIGR02130	275	dapB_plant dihydrodipicolinate reductase. This nar	99.05
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	98.96
PF00549	153	Ligase_CoA: CoA-ligase; InterPro: IPR005811 This e	98.93
PRK11579	346	putative oxidoreductase; Provisional	98.59
PRK13303	265	L-aspartate dehydrogenase; Provisional	98.5
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.48
COG0673	342	MviM Predicted dehydrogenases and related proteins	98.47
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.38
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.34
PRK10206	344	putative oxidoreductase; Provisional	98.33
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	98.22
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	98.12
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	98.09
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	97.87
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.85
PRK05479	330	ketol-acid reductoisomerase; Provisional	97.69
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	97.67
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.65
TIGR03855	229	NAD_NadX aspartate dehydrogenase. Members of this	97.65
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	97.6
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	97.58
PRK06270	341	homoserine dehydrogenase; Provisional	97.58
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	97.57
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	97.56
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.51
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	97.49
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	97.49
PRK06349	426	homoserine dehydrogenase; Provisional	97.48
PRK08300	302	acetaldehyde dehydrogenase; Validated	97.47
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.46
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.45
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.41
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	97.41
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.36
PRK07680	273	late competence protein ComER; Validated	97.35
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.34
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	97.34
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	97.31
PLN02256	304	arogenate dehydrogenase	97.3
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.29
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	97.28
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.28
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.26
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	97.25
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.25
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	97.25
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	97.2
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.19
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.17
PRK00696	388	sucC succinyl-CoA synthetase subunit beta; Provisi	97.16
TIGR01016	386	sucCoAbeta succinyl-CoA synthetase, beta subunit.	97.15
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	97.11
PRK15059	292	tartronate semialdehyde reductase; Provisional	97.08
PRK13403	335	ketol-acid reductoisomerase; Provisional	97.07
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	97.06
PRK08374	336	homoserine dehydrogenase; Provisional	97.05
PRK06091	555	membrane protein FdrA; Validated	97.04
PLN02688	266	pyrroline-5-carboxylate reductase	97.0
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	96.98
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	96.97
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	96.95
PLN02712	667	arogenate dehydrogenase	96.94
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	96.91
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.89
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	96.88
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	96.81
PRK08655	437	prephenate dehydrogenase; Provisional	96.8
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.79
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.78
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	96.78
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	96.77
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.74
PLN02712	667	arogenate dehydrogenase	96.7
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.67
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	96.64
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	96.64
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	96.59
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.55
PRK06545	359	prephenate dehydrogenase; Validated	96.54
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	96.54
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	96.49
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	96.48
PRK08507	275	prephenate dehydrogenase; Validated	96.43
PLN02383	344	aspartate semialdehyde dehydrogenase	96.4
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	96.4
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	96.37
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	96.35
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	96.33
PRK14046	392	malate--CoA ligase subunit beta; Provisional	96.29
PRK07417	279	arogenate dehydrogenase; Reviewed	96.25
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	96.25
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.22
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	96.2
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.19
PRK06444	197	prephenate dehydrogenase; Provisional	96.13
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	96.12
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	96.09
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	96.08
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	95.97
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	95.95
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.94
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.91
PRK08818	370	prephenate dehydrogenase; Provisional	95.86
PRK06392	326	homoserine dehydrogenase; Provisional	95.83
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	95.83
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	95.79
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	95.76
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	95.73
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	95.68
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	95.67
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.63
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.58
PLN02858	1378	fructose-bisphosphate aldolase	95.57
TIGR03025	445	EPS_sugtrans exopolysaccharide biosynthesis polypr	95.52
TIGR03023	451	WcaJ_sugtrans Undecaprenyl-phosphate glucose phosp	95.5
PRK15204	476	undecaprenyl-phosphate galactose phosphotransferas	95.49
PRK06436	303	glycerate dehydrogenase; Provisional	95.49
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.45
PRK08605	332	D-lactate dehydrogenase; Validated	95.43
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	95.41
PRK05225	487	ketol-acid reductoisomerase; Validated	95.38
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	95.35
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.34
PRK07574	385	formate dehydrogenase; Provisional	95.33
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	95.32
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	95.29
TIGR03022	456	WbaP_sugtrans Undecaprenyl-phosphate galactose pho	95.18
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.16
PLN00124	422	succinyl-CoA ligase [GDP-forming] subunit beta; Pr	95.15
PRK12480	330	D-lactate dehydrogenase; Provisional	95.11
CHL00194	317	ycf39 Ycf39; Provisional	95.1
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.04
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	95.01
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	94.96
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	94.96
PRK10124	463	putative UDP-glucose lipid carrier transferase; Pr	94.91
PLN02858	1378	fructose-bisphosphate aldolase	94.89
PLN03139	386	formate dehydrogenase; Provisional	94.88
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	94.86
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.85
PRK13243	333	glyoxylate reductase; Reviewed	94.83
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	94.8
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	94.51
PLN00016	378	RNA-binding protein; Provisional	94.45
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	94.42
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	94.31
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	94.26
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	94.17
PF13727	175	CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.	94.16
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	94.13
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	94.08
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	94.03
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.01
KOG0409	327	consensus Predicted dehydrogenase [General functio	93.95
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	93.93
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	93.91
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.9
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	93.89
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	93.83
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	93.8
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	93.7
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	93.65
TIGR03013	442	EpsB_2 sugar transferase, PEP-CTERM system associa	93.63
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	93.59
PRK05865	854	hypothetical protein; Provisional	93.58
COG2910	211	Putative NADH-flavin reductase [General function p	93.55
COG0045	387	SucC Succinyl-CoA synthetase, beta subunit [Energy	93.52
PRK06932	314	glycerate dehydrogenase; Provisional	93.48
PRK06719	157	precorrin-2 dehydrogenase; Validated	93.46
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	93.43
PRK08306	296	dipicolinate synthase subunit A; Reviewed	93.39
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	93.37
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	93.27
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	93.27
PRK08955	334	glyceraldehyde-3-phosphate dehydrogenase; Validate	93.2
PLN02695	370	GDP-D-mannose-3',5'-epimerase	93.1
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	92.94
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	92.86
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	92.78
COG0565	242	LasT rRNA methylase [Translation, ribosomal struct	92.77
PF02593	217	dTMP_synthase: Thymidylate synthase; InterPro: IPR	92.77
COG4693	361	PchG Oxidoreductase (NAD-binding), involved in sid	92.5
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	92.42
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	92.38
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	92.33
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	92.31
COG4569	310	MhpF Acetaldehyde dehydrogenase (acetylating) [Sec	92.22
PRK10675	338	UDP-galactose-4-epimerase; Provisional	91.92
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	91.74
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	91.67
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	91.65
PLN03209	576	translocon at the inner envelope of chloroplast su	91.62
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	91.62
PLN02928	347	oxidoreductase family protein	91.62
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	91.6
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	91.6
COG0569	225	TrkA K+ transport systems, NAD-binding component [	91.58
PLN02214	342	cinnamoyl-CoA reductase	91.56
COG1810	224	Uncharacterized protein conserved in archaea [Func	91.56
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	91.55
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	91.55
COG3268	382	Uncharacterized conserved protein [Function unknow	91.5
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	91.48
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	91.47
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	91.33
PRK06813	346	homoserine dehydrogenase; Validated	91.3
PTZ00023	337	glyceraldehyde-3-phosphate dehydrogenase; Provisio	91.24
PRK08223	287	hypothetical protein; Validated	91.13
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	90.96
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	90.94
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	90.93
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	90.93
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	90.89
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	90.7
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	90.68
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	90.67
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	90.65
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	90.63
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	90.63
PRK12320	699	hypothetical protein; Provisional	90.61
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	90.61
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	90.57
PRK07403	337	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	90.55
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	90.36
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	90.31
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	90.26
PLN02240	352	UDP-glucose 4-epimerase	90.23
PRK05562	223	precorrin-2 dehydrogenase; Provisional	89.9
PTZ00434	361	cytosolic glyceraldehyde 3-phosphate dehydrogenase	89.86
COG2185	143	Sbm Methylmalonyl-CoA mutase, C-terminal domain/su	89.81
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	89.78
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	89.7
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	89.66
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	89.62
PLN02235	423	ATP citrate (pro-S)-lyase	89.44
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	89.41
PRK07729	343	glyceraldehyde-3-phosphate dehydrogenase; Validate	89.39
PRK08618	325	ornithine cyclodeaminase; Validated	89.37
PRK09414	445	glutamate dehydrogenase; Provisional	89.29
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	89.2
PLN02896	353	cinnamyl-alcohol dehydrogenase	89.01
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	88.99
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	88.94
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	88.88
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	88.84
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.75
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	88.73
PLN02583	297	cinnamoyl-CoA reductase	88.55
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	88.53
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	88.41
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	88.38
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.35
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	88.29
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	88.24
PRK08328	231	hypothetical protein; Provisional	88.14
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	88.11
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	88.05
PF00289	110	CPSase_L_chain: Carbamoyl-phosphate synthase L cha	88.0
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	87.94
PRK06487	317	glycerate dehydrogenase; Provisional	87.91
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	87.89
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	87.8
PLN02166	436	dTDP-glucose 4,6-dehydratase	87.73
PLN02494	477	adenosylhomocysteinase	87.7
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	87.6
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	87.55
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	87.45
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	87.43
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	87.41
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	87.35
PRK06046	326	alanine dehydrogenase; Validated	87.22
COG3804	350	Uncharacterized conserved protein related to dihyd	87.19
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	87.07
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	87.02
PRK14031	444	glutamate dehydrogenase; Provisional	86.86
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	86.86
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	86.7
PF07755	301	DUF1611: Protein of unknown function (DUF1611); In	86.67
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	86.65
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	86.63
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	86.58
COG1171	347	IlvA Threonine dehydratase [Amino acid transport a	86.56
PTZ00117	319	malate dehydrogenase; Provisional	86.48
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	86.42
TIGR00640	132	acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal	86.42
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	86.4
COG0460	333	ThrA Homoserine dehydrogenase [Amino acid transpor	86.29
TIGR01501	134	MthylAspMutase methylaspartate mutase, S subunit.	86.16
PRK04148	134	hypothetical protein; Provisional	86.14
PRK15425	331	gapA glyceraldehyde-3-phosphate dehydrogenase A; P	86.09
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	85.83
PRK10949	618	protease 4; Provisional	85.69
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	85.66
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	85.65
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	85.51
PRK15116	268	sulfur acceptor protein CsdL; Provisional	85.5
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	85.46
PRK14851	679	hypothetical protein; Provisional	85.41
PRK10433	228	putative RNA methyltransferase; Provisional	85.3
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	85.03
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	85.01
cd06379	377	PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/	84.99
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	84.83
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	84.61
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	84.5
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	84.33
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	84.24
PRK06179	270	short chain dehydrogenase; Provisional	84.21
PLN02237	442	glyceraldehyde-3-phosphate dehydrogenase B	84.16
PLN02778	298	3,5-epimerase/4-reductase	83.61
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	83.54
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	83.49
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	83.41
PRK08057	248	cobalt-precorrin-6x reductase; Reviewed	83.31
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	83.25
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	83.23
PRK14852	989	hypothetical protein; Provisional	83.08
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	82.88
PLN02206	442	UDP-glucuronate decarboxylase	82.87
PTZ00082	321	L-lactate dehydrogenase; Provisional	82.81
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	82.54
PRK10538	248	malonic semialdehyde reductase; Provisional	82.53
PRK10949	618	protease 4; Provisional	82.52
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	82.18
cd02071	122	MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin	82.16
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	82.06
PRK10669	558	putative cation:proton antiport protein; Provision	82.04
PRK14030	445	glutamate dehydrogenase; Provisional	82.03
PLN02650	351	dihydroflavonol-4-reductase	82.0
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	81.95
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	81.81
PRK09291	257	short chain dehydrogenase; Provisional	81.64
PTZ00353	342	glycosomal glyceraldehyde-3-phosphate dehydrogenas	81.27
COG1184	301	GCD2 Translation initiation factor 2B subunit, eIF	81.14
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	81.12
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	81.08
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	81.06
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	81.01
cd02072	128	Glm_B12_BD B12 binding domain of glutamate mutase	81.01
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	80.96
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	80.82
PLN02306	386	hydroxypyruvate reductase	80.76
PLN02427	386	UDP-apiose/xylose synthase	80.32
PRK06223	307	malate dehydrogenase; Reviewed	80.06

>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional

Probab=100.00  E-value=1.8e-72  Score=538.86  Aligned_cols=300  Identities=76%  Similarity=1.219  Sum_probs=280.7

Q ss_pred             CCCCCCCCCcccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceec--CcccccCHHHhhccCCCcE
Q 019500           25 RSFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL--GLPVFNTVAEAKAETKANA  102 (340)
Q Consensus        25 ~~~~~~~~~l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~--G~p~y~sl~dip~~~~vDl  102 (340)
                      .-|++|   +.++|.+++++|+|+|.+|+.|++|.+.+++||.++|++|||+++|++++  |+|||+|++|+++++++|+
T Consensus        15 ~~~~~~---~~~i~~~~~t~v~vqGitg~~g~~h~~~~~~ygt~iv~GV~Pgkgg~~v~~~Gvpvy~sv~ea~~~~~~D~   91 (317)
T PTZ00187         15 ARSSTS---APRVWVNKNTKVICQGITGKQGTFHTEQAIEYGTKMVGGVNPKKAGTTHLKHGLPVFATVKEAKKATGADA   91 (317)
T ss_pred             HHHhcc---CccEEEcCCCeEEEecCCChHHHHHHHHHHHhCCcEEEEECCCCCCceEecCCccccCCHHHHhcccCCCE
Confidence            357888   89999999999999999999999999999999999999999999889999  9999999999998666999


Q ss_pred             EEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCCCCCCCc
Q 019500          103 SAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGR  182 (340)
Q Consensus       103 avi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~~~~~~~~~~~~~~~G~  182 (340)
                      ++|++|+..++++++||+++|++.++++|+||++.++.++++++++++|+|++||||+|++||....++++|...++||+
T Consensus        92 avI~VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~rliGPNc~Gii~p~~~~~gi~p~~~~~~G~  171 (317)
T PTZ00187         92 SVIYVPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNKTRLIGPNCPGIIKPGECKIGIMPGHIHKKGK  171 (317)
T ss_pred             EEEecCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCCCEEECCCCceEEcchhhccccCCcCCCCCCC
Confidence            99999999999999999999999999999999999988887766457999999999999999985445666766678999


Q ss_pred             EEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCC
Q 019500          183 IGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGT  262 (340)
Q Consensus       183 valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~  262 (340)
                      ||+|||||++++++++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|+||+|.+|++++++++|+++.++
T Consensus       172 VgiVSqSGtl~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi~~~~~  251 (317)
T PTZ00187        172 IGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKNNPI  251 (317)
T ss_pred             EEEEeCCHHHHHHHHHHHHHcCCCEEEEEEeCCCCCCCCCHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHHHhhcC
Confidence            99999999999999999999999999999999998889999999999999999999999999999999999999998667


Q ss_pred             CCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHHHHHHHHHHHhc
Q 019500          263 EKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQR  336 (340)
Q Consensus       263 ~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el~~~~~~~~~~~  336 (340)
                      +||||+||+|||++.|+++||||         ||++++.|+++.++++|+|+|++++++++||.++++..++++
T Consensus       252 ~KPVVa~~aGrsap~G~r~gHaG---------Ai~~~~~G~~~~k~aal~qaGv~v~~~~~el~~~~~~~~~~~  316 (317)
T PTZ00187        252 KKPVVSFIAGITAPPGRRMGHAG---------AIISGGKGTAPGKIEALEAAGVRVVKSPAQLGKTMLEVMKKK  316 (317)
T ss_pred             CCcEEEEEecCCCCCCCcccchh---------hhhccCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHhc
Confidence            99999999999985599999999         999888899999999999999999999999999999988765

>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha

Probab=100.00  E-value=7.4e-72  Score=532.70  Aligned_cols=293  Identities=93%  Similarity=1.366  Sum_probs=268.3

Q ss_pred             cccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500           36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        36 ~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~  115 (340)
                      .+|.+++.+|+|+|.+++.|+.+.+.+++||.+++++|||++.+++++|+|||+|++|+|++.+||++++++|++.++++
T Consensus         6 ~~~~~~~~~v~~~gi~~~~~~~~~~~~~~ygt~~~~gV~p~~~~~~i~G~~~y~sv~dlp~~~~~DlAvI~vPa~~v~~a   85 (300)
T PLN00125          6 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAA   85 (300)
T ss_pred             eEEecCCCeEEEecCCCHHHHHHHHHHHHhCCcEEEEECCCCCCceEcCeeccCCHHHHhhccCCCEEEEecCHHHHHHH
Confidence            77878889999999999999999999999999999999999766899999999999999984348999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCCCCCCcEEEEecChHHHH
Q 019500          116 ILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYIHKPGRIGIVSRSGTLTY  194 (340)
Q Consensus       116 v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~-~~~~~~~~~~~~~~G~valvSQSG~l~~  194 (340)
                      ++||+++|+|.++|+|+||+|.+++++...++|++|+|++||||+|++||. +++.++.+ ..+++|+||||||||+++.
T Consensus        86 l~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~girviGPNc~Gii~~~~~~~~~~~~-~~~~~G~ValiSQSG~l~~  164 (300)
T PLN00125         86 ILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPG-YIHKPGRIGIVSRSGTLTY  164 (300)
T ss_pred             HHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCCEEECCCCceeecccccceeecCC-CCCCCCcEEEEeCCccHHH
Confidence            999999999999999999999886555544448999999999999999998 66655533 3467999999999999999


Q ss_pred             HHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEeCCC
Q 019500          195 EAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLT  274 (340)
Q Consensus       195 ~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvvlk~Grs  274 (340)
                      ++++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|+||+|++|+.++|+++|+++++++||||+||+|||
T Consensus       165 ~l~~~~~~~giG~S~~VS~Gn~~~adv~~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~aa~~~KPVV~lk~Grs  244 (300)
T PLN00125        165 EAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGTEKPVVAFIAGLT  244 (300)
T ss_pred             HHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHHHhcCCCCEEEEEecCC
Confidence            99999999999999999999994449999999999999999999999999988889999999999988999999999999


Q ss_pred             CCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHHHHHHHHHHHhcCC
Q 019500          275 APPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGL  338 (340)
Q Consensus       275 ~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el~~~~~~~~~~~~~  338 (340)
                      ++.|+++||||         ||++++.|++++|+++|+|+|+++++|++||+++++.+++..||
T Consensus       245 ~~~g~~~sHTG---------ala~~~~G~~~~~~a~~rq~Gvi~v~~~~el~~~~~~~~~~~~~  299 (300)
T PLN00125        245 APPGRRMGHAG---------AIVSGGKGTAQDKIKALREAGVTVVESPAKIGVAMLEVFKERGL  299 (300)
T ss_pred             CCCCCCccchh---------hhhcCCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHhccC
Confidence            83388899999         99756668999999999999999999999999999999988776

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=100.00  E-value=1.3e-71  Score=530.08  Aligned_cols=289  Identities=65%  Similarity=1.071  Sum_probs=261.5

Q ss_pred             cccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500           36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        36 ~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~  115 (340)
                      +++.+++++|+|+|.+++.|+.+.++|+++||+.++||||+..+++++|+|||+|++|+|++.+||++++++|++.++++
T Consensus         2 ~~~~~~~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~~v~~~   81 (291)
T PRK05678          2 SILINKDTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPPPFAADA   81 (291)
T ss_pred             ceEecCCCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCHHHHHHH
Confidence            35667788999999999999999999999999988899999212899999999999999983239999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCCCCCCcEEEEecChHHHH
Q 019500          116 ILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYIHKPGRIGIVSRSGTLTY  194 (340)
Q Consensus       116 v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~-~~~~~~~~~~~~~~G~valvSQSG~l~~  194 (340)
                      +++|+++|+|.++|+|+||++++.+++.+.+ +++|+|++||||+|++||. +++.+| +...+++|+||+|||||+++.
T Consensus        82 l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a-~~~girvlGPNc~Gi~~~~~~~~~~~-~~~~~~~G~valiSQSGal~~  159 (291)
T PRK05678         82 ILEAIDAGIDLIVCITEGIPVLDMLEVKAYL-ERKKTRLIGPNCPGIITPGECKIGIM-PGHIHKKGRVGVVSRSGTLTY  159 (291)
T ss_pred             HHHHHHCCCCEEEEECCCCCHHHHHHHHHHH-HHcCCEEECCCCCcccccccceeeec-CCCCCCCCCEEEEeccHHHHH
Confidence            9999999999999999999987767888876 8999999999999999998 655555 333467999999999999999


Q ss_pred             HHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEeCCC
Q 019500          195 EAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLT  274 (340)
Q Consensus       195 ~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvvlk~Grs  274 (340)
                      ++++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|++|+|+++++.+++++|+++. ++||||+||+|||
T Consensus       160 ~~~~~~~~~giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~a~~~~~~~-~~KPVV~lk~Grs  238 (291)
T PRK05678        160 EAVAQLTDLGFGQSTCVGIGGDPINGTNFIDVLEAFEEDPETEAIVMIGEIGGSAEEEAAEYIKAN-VTKPVVGYIAGVT  238 (291)
T ss_pred             HHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCcHHHHHHHHHHHc-CCCCEEEEEecCC
Confidence            999999999999999999999964479999999999999999999999999888888889998865 6899999999999


Q ss_pred             CCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHHHHHHHHHHHhc
Q 019500          275 APPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQR  336 (340)
Q Consensus       275 ~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el~~~~~~~~~~~  336 (340)
                      ++.|+++||||         ||++++.|++.+|+++|+|+|+++++|++||+|+++++++.|
T Consensus       239 ~~~g~~~sHTG---------ala~~~~g~~~~~~a~~~q~Gvi~v~~~~el~~~~~~~~~~~  291 (291)
T PRK05678        239 APPGKRMGHAG---------AIISGGKGTAEEKKEALEAAGVKVARTPSEIGELLKEVLKGL  291 (291)
T ss_pred             CCCCCcccchh---------hhccCCCCCHHHHHHHHHHCCCeECCCHHHHHHHHHHHHccC
Confidence            94388899999         998777899999999999999999999999999999988643

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=100.00  E-value=4.4e-71  Score=525.19  Aligned_cols=282  Identities=65%  Similarity=1.065  Sum_probs=258.3

Q ss_pred             CcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHH
Q 019500           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (340)
Q Consensus        39 ~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e  118 (340)
                      .+++.+|+|+|.+++.|+.+.++|+.+||+++++|||++.+++++|+|||+|++|+|++.+||++++++|++.+++++++
T Consensus         3 ~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~~~l~e   82 (286)
T TIGR01019         3 LDKDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAPFAADAIFE   82 (286)
T ss_pred             ecCCCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHHHHHHHHHH
Confidence            45678999999999999999999999999999999999444899999999999999984238999999999999999999


Q ss_pred             HHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCCCCCCcEEEEecChHHHHHHH
Q 019500          119 AMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYIHKPGRIGIVSRSGTLTYEAV  197 (340)
Q Consensus       119 a~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~-~~~~~~~~~~~~~~G~valvSQSG~l~~~~~  197 (340)
                      |.++|+|.++|+|+||+|.+++++.+++ +++|+|++||||+|++||. +++.+|.+ ..++||+||+|||||+++.+++
T Consensus        83 ~~~~Gvk~avIis~Gf~e~~~~~l~~~a-~~~girilGPNc~Giin~~~~~~~~~~~-~~~~~G~ValiSQSG~l~~~~~  160 (286)
T TIGR01019        83 AIDAGIELIVCITEGIPVHDMLKVKRYM-EESGTRLIGPNCPGIITPGECKIGIMPG-HIHKPGNVGIVSRSGTLTYEAV  160 (286)
T ss_pred             HHHCCCCEEEEECCCCCHHHHHHHHHHH-HHcCCEEECCCCceEEcccccceeeccc-cCCCCCcEEEEeccHHHHHHHH
Confidence            9999999999999999998777888876 8999999999999999998 77777644 3467999999999999999999


Q ss_pred             HHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEeCCCCCC
Q 019500          198 FQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPP  277 (340)
Q Consensus       198 ~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvvlk~Grs~~~  277 (340)
                      +|++++|+|||++||+||+++.|+++.|+|+||.+||+|++|++|+|+++++++++++|++++ ++||||++|+|||++.
T Consensus       161 ~~a~~~giG~S~~Vs~Gn~a~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~~~~~~~~~-~~KPVV~lk~Grs~~~  239 (286)
T TIGR01019       161 HQLTKAGFGQSTCVGIGGDPVNGTSFIDVLEAFEKDPETEAIVMIGEIGGSAEEEAADFIKQN-MSKPVVGFIAGATAPP  239 (286)
T ss_pred             HHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCchHHHHHHHHHhc-CCCCEEEEEecCCCCc
Confidence            999999999999999999974479999999999999999999999999998888999998874 6899999999999833


Q ss_pred             CCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHHHHHHHHH
Q 019500          278 GRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEV  332 (340)
Q Consensus       278 g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el~~~~~~~  332 (340)
                      |+++||||         ||+++..|++++|+++|||+|+++++|++||+|.+++.
T Consensus       240 g~~~sHTG---------ala~~~~g~~~~~~aa~rqaGvi~v~~~~el~d~l~~~  285 (286)
T TIGR01019       240 GKRMGHAG---------AIISGGKGTAESKIEALEAAGVTVVKSPSDIGELLAEI  285 (286)
T ss_pred             cccccchh---------hhhcCCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHh
Confidence            88899999         99866668999999999999999999999999999864

ATP citrate lyases appear to form an outgroup.

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=100.00  E-value=1.2e-66  Score=523.89  Aligned_cols=272  Identities=26%  Similarity=0.369  Sum_probs=248.9

Q ss_pred             cccccCcCCeEEEEeCCCC---CcchHHHHHHHHcCCe-EEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           34 APAVFVDKNTRVICQGITG---KNGTFHTEQAIEYGTK-MVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        34 l~~lf~p~~iaViVvGasg---k~G~~v~~~l~~~G~~-vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      |++||.|++|+|+  |+|.   ++|+.+.++|+++||+ .+|||||++  +++.|+|||+|++|+|+  .+|++++++|+
T Consensus         1 l~~l~~p~siavv--GaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~--~~i~G~~~~~sl~~lp~--~~Dlavi~vp~   74 (447)
T TIGR02717         1 LEHLFNPKSVAVI--GASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKA--GEILGVKAYPSVLEIPD--PVDLAVIVVPA   74 (447)
T ss_pred             CccccCCCEEEEE--ccCCCCCchHHHHHHHHHhCCCCCcEEEECCCC--CccCCccccCCHHHCCC--CCCEEEEecCH
Confidence            5689999998777  9985   5688899999999996 678999998  79999999999999997  59999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhh------HHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCCCCCCc
Q 019500          110 PFAAAAILEAMEAELDLVVCITEGIPQHD------MVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYIHKPGR  182 (340)
Q Consensus       110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~------~~~l~~~aar~~girviGPNc~Gi~~p~-~~~~~~~~~~~~~~G~  182 (340)
                      +.+++++++|.++|+|.+||+|+||+|.+      .+++.+++ |++|+|++||||+|++||. +++.+|.+. .+++|+
T Consensus        75 ~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a-~~~girvlGPnc~G~~~~~~~l~~~~~~~-~~~~G~  152 (447)
T TIGR02717        75 KYVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIA-RKYGMRLLGPNCLGIINTHIKLNATFAPT-MPKKGG  152 (447)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHH-HHcCCEEEecCeeeEecCCCCeeeecCCC-CCCCCC
Confidence            99999999999999999999999999854      24566665 8999999999999999999 888887554 467999


Q ss_pred             EEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-
Q 019500          183 IGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-  261 (340)
Q Consensus       183 valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-  261 (340)
                      ||+|||||+++.++++|+.++|+|||++||+||++  |+++.|+|+||.+||+|++|++|+|+    ++|+++|++++| 
T Consensus       153 valvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~--d~~~~d~l~~l~~D~~t~~I~ly~E~----~~~~~~f~~aa~~  226 (447)
T TIGR02717       153 IAFISQSGALLTALLDWAEKNGVGFSYFVSLGNKA--DIDESDLLEYLADDPDTKVILLYLEG----IKDGRKFLKTARE  226 (447)
T ss_pred             EEEEechHHHHHHHHHHHHhcCCCcceEEECCchh--hCCHHHHHHHHhhCCCCCEEEEEecC----CCCHHHHHHHHHH
Confidence            99999999999999999999999999999999998  99999999999999999999999998    678899999876 


Q ss_pred             --CCCCEEEEEeCCCCCCCCc--ccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHHHHHHHHHH
Q 019500          262 --TEKPIVAFIAGLTAPPGRR--MGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF  333 (340)
Q Consensus       262 --~~KPVvvlk~Grs~~~g~~--~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el~~~~~~~~  333 (340)
                        ++||||+||+|||+. |++  +||||         |++    |++++|+++|+|+|+++++|++||+++++.+-
T Consensus       227 a~~~KPVv~~k~Grs~~-g~~aa~sHtg---------ala----g~~~~~~a~~~~~Gv~~~~~~~el~~~~~~l~  288 (447)
T TIGR02717       227 ISKKKPIVVLKSGTSEA-GAKAASSHTG---------ALA----GSDEAYDAAFKQAGVIRADSIEELFDLARLLS  288 (447)
T ss_pred             HcCCCCEEEEecCCChh-hhhhhhhccc---------ccc----ChHHHHHHHHHHCCeEEeCCHHHHHHHHHHHh
Confidence              689999999999998 776  69999         998    99999999999999999999999999998633

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=100.00  E-value=2e-55  Score=408.68  Aligned_cols=290  Identities=67%  Similarity=1.076  Sum_probs=277.4

Q ss_pred             cccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500           36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        36 ~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~  115 (340)
                      ++|.+++++|+|+|.++++|++|.+.++++|++++++|+|+++|.++.|+|+|.+++|..+++..|+.+||+|+.++.+.
T Consensus         2 ~il~~k~tkvivqGitg~~gtfh~~~~l~yGt~~V~GvtPgkgG~~~~g~PVf~tV~EA~~~~~a~~svI~Vp~~~aada   81 (293)
T COG0074           2 SILLNKDTKVIVQGITGKQGTFHTEQMLAYGTKIVGGVTPGKGGQTILGLPVFNTVEEAVKETGANASVIFVPPPFAADA   81 (293)
T ss_pred             ceeecCCCeEEEeccccccchHHHHHHHHhCCceeecccCCCCceEEcCccHHHHHHHHHHhhCCCEEEEecCcHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999988789999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCCCCCCCcEEEEecChHHHHH
Q 019500          116 ILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYE  195 (340)
Q Consensus       116 v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~~~~~~~~~~~~~~~G~valvSQSG~l~~~  195 (340)
                      +.||+++|++.++++|.|++..|+.++.+.+ ++.|++++||||.|++.|..+.++++|...++||+|++||.||+++++
T Consensus        82 i~EAida~i~liv~ITEgIP~~D~~~~~~~a-~~~g~~iiGPncpGiI~Pg~~kiGimp~~i~~~G~IGiVSrSGTLTyE  160 (293)
T COG0074          82 ILEAIDAGIKLVVIITEGIPVLDMLELKRYA-REKGTRLIGPNCPGIITPGECKIGIMPGNIYKPGNIGIVSRSGTLTYE  160 (293)
T ss_pred             HHHHHhCCCcEEEEEeCCCCHHHHHHHHHHH-HhcCCEEECCCCCccCcCCcceeeechhhhccCCceEEEecCcchHHH
Confidence            9999999999999999999999999988887 888999999999999999978899999988999999999999999999


Q ss_pred             HHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCC
Q 019500          196 AVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIAGLT  274 (340)
Q Consensus       196 ~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvvlk~Grs  274 (340)
                      +..+..+.|+|+|+.|++|++.+.++++.|+|+.|.+||+|++|+|..|.+|+.+..+++|+++ . .+||||+|-+||+
T Consensus       161 ~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGEiGG~aEe~AA~~i~~-~~~~KPVVa~iaG~t  239 (293)
T COG0074         161 AVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGEIGGPAEEEAAEYIKA-NATRKPVVAYIAGRT  239 (293)
T ss_pred             HHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEecCCCcHHHHHHHHHHH-hccCCCEEEEEeccC
Confidence            9999999999999999999999999999999999999999999999999999999999999998 5 4599999999999


Q ss_pred             CCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHHHHHHHHHHHhc
Q 019500          275 APPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQR  336 (340)
Q Consensus       275 ~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el~~~~~~~~~~~  336 (340)
                      +++|+|++|+|         |+++++.|+++.+.++|+.+|+.+++++.++.++++.+++.+
T Consensus       240 ap~gkrmGhaG---------aiv~~~~gta~~Ki~al~~aGv~v~etp~~l~~~l~~vl~~~  292 (293)
T COG0074         240 APEGKRMGHAG---------AIVSGGKGTAESKIAALEAAGVKVAETPAELGELLLEVLKGR  292 (293)
T ss_pred             CCccchhhhhh---------hhhcCCCccHHHHHHHHHHcCCeecCCHHHHHHHHHHHhhcc
Confidence            99999999999         999999999999999999999999999999999999888654

>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=100.00  E-value=7.4e-54  Score=388.21  Aligned_cols=311  Identities=73%  Similarity=1.174  Sum_probs=292.7

Q ss_pred             ccccccCCCCCCCCCCCCcccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhh
Q 019500           16 SSEICCGQSRSFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK   95 (340)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip   95 (340)
                      +.-+|--.+..|+.|   ...|+.++.++|+++|.+||.|++|.+..++||.++|.+|||+.+|.+..|+|+|.|++|..
T Consensus        15 ~~~~~~~~~s~y~~T---~~nl~ink~TkVi~QGfTGKqgTFHs~q~~eYgTk~VgG~~pkK~Gt~HLG~PVF~sV~eA~   91 (329)
T KOG1255|consen   15 SLGILRVFKSLYNKT---ISNLKINKDTKVICQGFTGKQGTFHSQQALEYGTKVVGGVNPKKGGTTHLGLPVFNSVAEAK   91 (329)
T ss_pred             Ccchhhhhcchhhhh---hhceeecCCceEEEecccCCccceeHHHHHHhCCceeeccCCCcCcccccCchhhhhHHHHH
Confidence            444554446689999   67899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCCC
Q 019500           96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPG  175 (340)
Q Consensus        96 ~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~~~~~~~~~~  175 (340)
                      ++..+|.-+|++||..+..+++|++++-++.+|++|+|+++.|+.++...+.++.+.|++||||.||++|..+.++++|.
T Consensus        92 ~~t~a~AsvIyVPpp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L~~Q~KtRLvGPNCPGII~p~qckIGImPg  171 (329)
T KOG1255|consen   92 KETGADASVIYVPPPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHALNSQSKTRLVGPNCPGIINPGQCKIGIMPG  171 (329)
T ss_pred             HhhCCCceEEEeCChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHHHHHhhcccceecCCCCCCccCccceeeccccc
Confidence            88889999999999999999999999999999999999999999998877667888999999999999999999999999


Q ss_pred             CCCCCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHH
Q 019500          176 YIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAA  255 (340)
Q Consensus       176 ~~~~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~  255 (340)
                      ...++|.|++||+||+|.++...+..+.|+|.|.+|.+|++++.+++|-|+|+.|.+||+|+.|+|..|.+|..++++++
T Consensus       172 ~Ihk~G~IGIVSRSGTLTYEaVhQTT~vglGQslcvGiGGDpFnGT~FID~L~vFl~D~~t~GIiliGEIGG~AEe~AA~  251 (329)
T KOG1255|consen  172 HIHKRGKIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTNFIDCLEVFLEDPETEGIILIGEIGGSAEEEAAE  251 (329)
T ss_pred             ccccCCeeEEEecCCceeehhhhhhccccccceeEEeecCCCCCCccHHHHHHHHhcCcccceEEEEeccCChhhHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhC---CCCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHHHHHHHHH
Q 019500          256 LIKESG---TEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEV  332 (340)
Q Consensus       256 f~~a~r---~~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el~~~~~~~  332 (340)
                      |+++..   ..||||-+.+|.++++|+|++|+|         |+.++++|.+..+.++|+.+||++++++..|..++...
T Consensus       252 flk~~nSg~~~kPVvsFIAG~tAppGrRMGHaG---------AIisGgkg~A~dKi~aL~~agV~vt~sPa~lG~~~~~~  322 (329)
T KOG1255|consen  252 FLKEYNSGSTAKPVVSFIAGVTAPPGRRMGHAG---------AIISGGKGTAKDKIAALRDAGVVVTESPAKLGSAMLEE  322 (329)
T ss_pred             HHHHhccCCCCCceeEEeecccCCCcccccccc---------eeeeCCCccHHHHHHHHHhcCeEEEcCHHHHHHHHHHH
Confidence            999843   789999999999999999999999         99999999999999999999999999999999988877


Q ss_pred             HHhcCC
Q 019500          333 FKQRGL  338 (340)
Q Consensus       333 ~~~~~~  338 (340)
                      |.++.|
T Consensus       323 ~~~~kl  328 (329)
T KOG1255|consen  323 FLKLKL  328 (329)
T ss_pred             HHhccC
Confidence            776654

>PLN02522 ATP citrate (pro-S)-lyase

Probab=100.00  E-value=1.1e-53  Score=438.16  Aligned_cols=283  Identities=28%  Similarity=0.458  Sum_probs=235.7

Q ss_pred             cccCcCCeEEEEeCCCCCcchHHHHHHHHcCC-------eEEEeeCCCCC-------CceecCcccccCHHHhhccC-CC
Q 019500           36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGT-------KMVGGVTPKKG-------GTEHLGLPVFNTVAEAKAET-KA  100 (340)
Q Consensus        36 ~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~-------~vv~~VnP~~~-------g~~i~G~p~y~sl~dip~~~-~v  100 (340)
                      .+|.++ ++-++.|.    ....++.|+++.|       .+.+.|+|..+       |+++.|+|+|++++|..+++ ++
T Consensus         5 ~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iPVf~tv~eA~~~~~~~   79 (608)
T PLN02522          5 QLFSRT-TQALFYNY----KQLPVQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHGSIEAACKAHPTA   79 (608)
T ss_pred             eeecCC-ceeEEEcC----cHHHHHhhhccceeccCCCCeeEEEEcCCCCcceeEecCCEeeCccccchHHHHHHhCCCC
Confidence            456554 45555664    5667788888765       25556888542       34578999999999999765 68


Q ss_pred             cEEEEecChhhHHHH-HHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCC-----
Q 019500          101 NASAIYVPPPFAAAA-ILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMP-----  174 (340)
Q Consensus       101 Dlavi~vp~~~v~~~-v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~~~~~~~~~-----  174 (340)
                      |+.++|+|+..+.+. +++|.++|+|.+||+|+||+|.+++++.+.+ +++|+|++||||+|++||..++++.++     
T Consensus        80 ~~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~A-r~~g~rlIGPNc~Gii~p~~~kig~~~~~~~~  158 (608)
T PLN02522         80 DVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYA-RANNKVVIGPATVGGIQAGAFKIGDTAGTLDN  158 (608)
T ss_pred             cEEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHH-HHcCCEEECCCCCeeEccCccccccccccccc
Confidence            999999999887765 5555567999999999999999988888887 899999999999999999743333222     


Q ss_pred             ---CCCCCCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHH
Q 019500          175 ---GYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEE  251 (340)
Q Consensus       175 ---~~~~~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~  251 (340)
                         +..++||+||+|||||++++++++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|++|+|.+   .+
T Consensus       159 ~~~~~~~~pG~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiG---g~  235 (608)
T PLN02522        159 IIQCKLYRPGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELG---GR  235 (608)
T ss_pred             ccCcCCCCCCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecC---ch
Confidence               233579999999999999999999999999999999999999977899999999999999999999999943   46


Q ss_pred             HHHHHHHHhC---CCCCEEEEEeCCCCC---CCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHH
Q 019500          252 DAAALIKESG---TEKPIVAFIAGLTAP---PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKI  325 (340)
Q Consensus       252 ~~~~f~~a~r---~~KPVvvlk~Grs~~---~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el  325 (340)
                      ++++|+++++   ++||||++|+|||++   .++++||||         |+++++.+++++++++|+|+|+++++|++||
T Consensus       236 ~e~~f~ea~~~a~~~KPVVa~kaGrsa~~~~~~aa~gHtG---------Aiag~~~~ta~~k~aAlr~aGv~vv~s~~El  306 (608)
T PLN02522        236 DEYSLVEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAG---------AKSGGDMESAQAKNKALKDAGAIVPTSFEAL  306 (608)
T ss_pred             hHHHHHHHHHHhcCCCCEEEEeccCCCccCcccccccccc---------ccccCCCccHHHHHHHHHHCCCeEeCCHHHH
Confidence            7778887665   789999999999994   255689999         9985555666999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 019500          326 GAAMLEVFKQR  336 (340)
Q Consensus       326 ~~~~~~~~~~~  336 (340)
                      +++++.++++|
T Consensus       307 ~~~~~~~~~~~  317 (608)
T PLN02522        307 EAAIKETFEKL  317 (608)
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]

Probab=100.00  E-value=1.5e-53  Score=438.28  Aligned_cols=274  Identities=25%  Similarity=0.371  Sum_probs=250.2

Q ss_pred             CCcccccCcCCeEEEEeCCCCC---cchHHHHHHHHcCCe-EEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEec
Q 019500           32 PPAPAVFVDKNTRVICQGITGK---NGTFHTEQAIEYGTK-MVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYV  107 (340)
Q Consensus        32 ~~l~~lf~p~~iaViVvGasgk---~G~~v~~~l~~~G~~-vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~v  107 (340)
                      .+|++||.|++++|+  |+|++   .|+.+.+||+++| + .+|||||++  +++.|++||+++.++|+  .+|+++++|
T Consensus         2 ~~l~~~~~p~svavi--gas~~~~~vg~~i~~nL~~~g-~g~i~PVnp~~--~~v~G~~ay~s~~~lp~--~~dlav~~v   74 (598)
T COG1042           2 RDLERLFAPKSIAVI--GASERPGKLGYEILRNLLEYG-QGKIYPVNPKY--DEVLGVKAYTSVADLPD--APDLAVIVV   74 (598)
T ss_pred             CchhhhhCCceEEEe--eccCCcchhHHHHHHHHHhcC-CCceEecCccc--cccccccccchHhhCCC--CCCeeEEEe
Confidence            358999999999877  99976   4677889999988 5 777999999  79999999999999998  599999999


Q ss_pred             ChhhHHHHHHHHHHcCCcEEEEecCCCChhhH------HHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCCC-C
Q 019500          108 PPPFAAAAILEAMEAELDLVVCITEGIPQHDM------VRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYIH-K  179 (340)
Q Consensus       108 p~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~------~~l~~~aar~~girviGPNc~Gi~~p~-~~~~~~~~~~~~-~  179 (340)
                      |+..+++++++|.++|++.+|++++||.|...      .++.+ +++++++|++||||+|++++. ++|.+|.|.... .
T Consensus        75 ~~~~~~~i~~~~~~kGv~~~i~is~gf~e~~~~~~~~e~~~~~-~a~~~~~rligPn~~G~~~~~~glna~f~p~~~~~~  153 (598)
T COG1042          75 PAKVVPEIVHELGEKGVKGAIVISAGFREAGEEGMELEKELVE-AARKYGMRIIGPNCLGLINPIIGLNATFDPVFGLGR  153 (598)
T ss_pred             chhhhHHHHHHhhccCCceEEEechhhhHHhhhHhHHHHHHHH-HHHhcCceEeccccccccccccccccccCccccccc
Confidence            99999999999999999999999999987532      23334 458999999999999999999 999999886432 2


Q ss_pred             CCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHH
Q 019500          180 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKE  259 (340)
Q Consensus       180 ~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a  259 (340)
                      +|+++|+||||+++..+++|+.+.++|||+++|.||++  |+++.|+++||.+|+.|++|.||+|+    .+|+++|+++
T Consensus       154 ~g~~afvsqsgav~~~il~~~~~~~~g~s~~vs~gn~a--d~~~~d~~~~~~~D~~tk~i~Ly~E~----~~~~r~fl~~  227 (598)
T COG1042         154 GGGGAFVSQSGAVSFAILDWANEDGMGFSIKVSLGNAA--DRDESDLLEYLADDPRTKAIGLYIEG----VKDGRKFLNA  227 (598)
T ss_pred             CCCeEEEEechHHHHhccchhhhcCCceeEEEeecchh--hcCchHhHHHHhhCccceEEEEEecc----chhHHHHHHH
Confidence            89999999999999999999999999999999999998  99999999999999999999999998    6799999998


Q ss_pred             hC---CCCCEEEEEeCCCCCCCCc--ccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHHHHHHHHHH
Q 019500          260 SG---TEKPIVAFIAGLTAPPGRR--MGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF  333 (340)
Q Consensus       260 ~r---~~KPVvvlk~Grs~~~g~~--~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el~~~~~~~~  333 (340)
                      ++   ++||+|++|+||+.. +++  .||||         +|+    |++.+|+++|+|+|++++++++||+|+++++.
T Consensus       228 a~~~~~~kpii~lk~gr~~~-~akAa~shTg---------sla----g~~~~y~Aa~~~agvir~~~~~elf~~~k~l~  292 (598)
T COG1042         228 ARAAERKKPIIALKAGRSEA-GAKAAASHTG---------SLA----GSDEAYDAAFKQAGVIRVESIEELFDAAKALS  292 (598)
T ss_pred             HHHHhcCCCEEEEeccCCHH-HHHHHhcccc---------ccc----ccchhhHHHHHhhCceeccChHHHHHHHHHhc
Confidence            87   789999999999999 776  59999         998    99999999999999999999999999999754

>PRK06091 membrane protein FdrA; Validated

Probab=100.00  E-value=5e-40  Score=332.01  Aligned_cols=204  Identities=22%  Similarity=0.328  Sum_probs=176.0

Q ss_pred             cCcccccCHH-HhhccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCC
Q 019500           83 LGLPVFNTVA-EAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG  161 (340)
Q Consensus        83 ~G~p~y~sl~-dip~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~G  161 (340)
                      .++++|++.. ++|+   +|+++|++|++.+++++++|+++| +.++|+|+||+.+..+++.+++ +++|+|++|||| |
T Consensus       103 ~~~~t~~~a~~~lpe---~DLAvIsVPa~~v~~al~ea~~~G-~~viI~S~gfg~~~E~~L~e~A-r~~GlrvmGPNC-G  176 (555)
T PRK06091        103 TQVRRWDSACQKLPD---ANLALISVAGEYAAELAEQALDRN-LNVMMFSDNVTLEDEIRLKTRA-REKGLLVMGPDC-G  176 (555)
T ss_pred             cccccHHHHHhcCCC---CCEEEEecCHHHHHHHHHHHHHcC-CeEEEEcCCCCHHHHHHHHHHH-HHcCCEEECCCC-h
Confidence            3455555533 3443   699999999999999999999999 5678999999877788888887 899999999999 7


Q ss_pred             cccCCCcccccCCCCCCCCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCC----CCCCHHHHHHHhhcCCCcc
Q 019500          162 VIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPF----NGTNFVDCVTKFIADPQTE  237 (340)
Q Consensus       162 i~~p~~~~~~~~~~~~~~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~----~dv~~~d~l~~l~~Dp~T~  237 (340)
                      +.|..+++++|.+.  ++||+||+|||||+++.++++|+.++|+|||++||+||+.+    .|+++.|+|+||.+||+|+
T Consensus       177 ~~~i~gl~lsF~~~--~~~G~IgiVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~Tk  254 (555)
T PRK06091        177 TAMIAGTPLAFANV--MPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSE  254 (555)
T ss_pred             hhhhcCCcccccCC--CCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCc
Confidence            66645777777543  46999999999999999999999999999999999999932    3889999999999999999


Q ss_pred             EEEEEE----ccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHH
Q 019500          238 GIILIG----EIGGTAEEDAAALIKESG-TEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLR  312 (340)
Q Consensus       238 ~I~ly~----E~~g~~~~~~~~f~~a~r-~~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~  312 (340)
                      +|++|+    |+    ++  ++|+++++ .+||||++|+||++.                         |.        +
T Consensus       255 vIvly~kppaE~----v~--~~fl~aar~~~KPVVvlk~Grs~~-------------------------g~--------~  295 (555)
T PRK06091        255 VIAFVSKPPAEA----VR--LKIINAMKATGKPVVALFLGYTPA-------------------------VA--------R  295 (555)
T ss_pred             EEEEEEecCchH----HH--HHHHHHHhhCCCCEEEEEecCCch-------------------------hh--------h
Confidence            999999    65    45  49999887 799999999999887                         22        8


Q ss_pred             HcCCeecCCHHHHHHHHHHHH
Q 019500          313 EAGVTVVESPAKIGAAMLEVF  333 (340)
Q Consensus       313 qaGvv~v~~~~el~~~~~~~~  333 (340)
                      |+|+++++|++|+++.+..+.
T Consensus       296 q~GVi~a~tleEl~~~A~~la  316 (555)
T PRK06091        296 DENVWFASTLDEAARLACLLS  316 (555)
T ss_pred             cCCeEEeCCHHHHHHHHHHHh
Confidence            999999999999999998654

>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A

Probab=100.00  E-value=5.6e-41  Score=287.62  Aligned_cols=132  Identities=29%  Similarity=0.439  Sum_probs=95.5

Q ss_pred             CCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHH
Q 019500          180 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKE  259 (340)
Q Consensus       180 ~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a  259 (340)
                      ||+||+|||||+++.+++++++++|+|||++||+||++  |+++.|+|+||.+||+|++|++|+|+    ++|+++|+++
T Consensus         1 ~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~--dv~~~d~l~~~~~D~~t~~I~ly~E~----~~d~~~f~~~   74 (138)
T PF13607_consen    1 PGGVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEA--DVDFADLLEYLAEDPDTRVIVLYLEG----IGDGRRFLEA   74 (138)
T ss_dssp             E-SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-S--SS-HHHHHHHHCT-SS--EEEEEES------S-HHHHHHH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccc--cCCHHHHHHHHhcCCCCCEEEEEccC----CCCHHHHHHH
Confidence            69999999999999999999999999999999999998  99999999999999999999999998    6678999987


Q ss_pred             hC---CCCCEEEEEeCCCCCCCCc--ccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHHHHHHHH
Q 019500          260 SG---TEKPIVAFIAGLTAPPGRR--MGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLE  331 (340)
Q Consensus       260 ~r---~~KPVvvlk~Grs~~~g~~--~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el~~~~~~  331 (340)
                      ++   +.||||+||+|||+. |++  .||||         +++    |++++|+++|+|+|+++++|++||++++++
T Consensus        75 ~~~a~~~KPVv~lk~Grt~~-g~~aa~sHTg---------sla----g~~~~~~a~~~~aGv~~v~~~~el~~~~~~  137 (138)
T PF13607_consen   75 ARRAARRKPVVVLKAGRTEA-GARAAASHTG---------SLA----GDDAVYDAALRQAGVVRVDDLDELLDAAKA  137 (138)
T ss_dssp             HHHHCCCS-EEEEE-----------------------------------HHHHHHHHHHCTEEEESSHHHHHHHHCC
T ss_pred             HHHHhcCCCEEEEeCCCchh-hhhhhhccCC---------ccc----CcHHHHHHHHHHcCceEECCHHHHHHHHHh
Confidence            75   569999999999999 776  69999         998    999999999999999999999999999864

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=99.90  E-value=8.7e-24  Score=176.24  Aligned_cols=111  Identities=25%  Similarity=0.410  Sum_probs=83.5

Q ss_pred             EEEeCCCC---CcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHH
Q 019500           45 VICQGITG---KNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAME  121 (340)
Q Consensus        45 ViVvGasg---k~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~  121 (340)
                      |+|+|+|.   ++|+.+.++|++.||+++ +|||++  ++++|+++|+|++|+|+  ++|++++++|++.+++++++|.+
T Consensus         3 iAVvGaS~~~~~~g~~v~~~l~~~G~~v~-~Vnp~~--~~i~G~~~y~sl~e~p~--~iDlavv~~~~~~~~~~v~~~~~   77 (116)
T PF13380_consen    3 IAVVGASDNPGKFGYRVLRNLKAAGYEVY-PVNPKG--GEILGIKCYPSLAEIPE--PIDLAVVCVPPDKVPEIVDEAAA   77 (116)
T ss_dssp             EEEET--SSTTSHHHHHHHHHHHTT-EEE-EESTTC--SEETTEE-BSSGGGCSS--T-SEEEE-S-HHHHHHHHHHHHH
T ss_pred             EEEEcccCCCCChHHHHHHHHHhCCCEEE-EECCCc--eEECcEEeeccccCCCC--CCCEEEEEcCHHHHHHHHHHHHH
Confidence            34559985   567888999999999865 999999  89999999999999766  69999999999999999999999


Q ss_pred             cCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccC
Q 019500          122 AELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKP  165 (340)
Q Consensus       122 ~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p  165 (340)
                      +|++.+| +.+|   +..+++.+.+ +++|++++||||+|+++|
T Consensus        78 ~g~~~v~-~~~g---~~~~~~~~~a-~~~gi~vigp~C~gv~~~  116 (116)
T PF13380_consen   78 LGVKAVW-LQPG---AESEELIEAA-REAGIRVIGPNCLGVVNP  116 (116)
T ss_dssp             HT-SEEE-E-TT---S--HHHHHHH-HHTT-EEEESS-HHHHHT
T ss_pred             cCCCEEE-EEcc---hHHHHHHHHH-HHcCCEEEeCCcceEEcC
Confidence            9999976 5555   2334455555 789999999999999886

>COG1832 Predicted CoA-binding protein [General function prediction only]

Probab=99.78  E-value=2.7e-19  Score=151.05  Aligned_cols=122  Identities=20%  Similarity=0.281  Sum_probs=102.3

Q ss_pred             cccccC-cCCeEEEEeCCCCC---cchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           34 APAVFV-DKNTRVICQGITGK---NGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        34 l~~lf~-p~~iaViVvGasgk---~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      +..+|. -+.|+|  +|+|.+   .++.+.+.|.+.||+++ ||||+..|++++|.++|+||+|+|+  ++|++.+|.++
T Consensus         9 i~~iL~~~K~IAv--VG~S~~P~r~sy~V~kyL~~~GY~Vi-PVNP~~~~~eiLG~k~y~sL~dIpe--~IDiVdvFR~~   83 (140)
T COG1832           9 IAEILKSAKTIAV--VGASDKPDRPSYRVAKYLQQKGYRVI-PVNPKLAGEEILGEKVYPSLADIPE--PIDIVDVFRRS   83 (140)
T ss_pred             HHHHHHhCceEEE--EecCCCCCccHHHHHHHHHHCCCEEE-eeCcccchHHhcCchhhhcHHhCCC--CCcEEEEecCh
Confidence            666664 455554  599975   46788999999999988 9999887789999999999999997  69999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccC
Q 019500          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKP  165 (340)
Q Consensus       110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p  165 (340)
                      +.++++++++++.|+|.+ |++.|...++..+..    +++|+.++-..|+.+--+
T Consensus        84 e~~~~i~~eal~~~~kv~-W~QlGi~n~ea~~~~----~~aG~~vV~nrCi~~E~~  134 (140)
T COG1832          84 EAAPEVAREALEKGAKVV-WLQLGIRNEEAAEKA----RDAGLDVVMDRCIMIEHP  134 (140)
T ss_pred             hhhHHHHHHHHhhCCCeE-EEecCcCCHHHHHHH----HHhCcHHHHHhhHHHHHh
Confidence            999999999999999885 599998665544332    678999999999987544

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=99.53  E-value=1e-13  Score=111.64  Aligned_cols=93  Identities=30%  Similarity=0.327  Sum_probs=77.7

Q ss_pred             cCCeEEEEeCCCCCcchHHHHH-HHHcCCe--EEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           40 DKNTRVICQGITGKNGTFHTEQ-AIEYGTK--MVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~-l~~~G~~--vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      ++..+|+|+|+ |+.|+..+.. ....||+  .++.+||+..|+++.|+|+|++++++.+..++|++++++|++.+++++
T Consensus         1 nk~~~v~ivGa-g~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~~a~~~~   79 (96)
T PF02629_consen    1 NKKTNVIIVGA-GNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAEAAQEVA   79 (96)
T ss_dssp             CTTEEEEEETT-TSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HHHHHHHH
T ss_pred             CCCCeEEEECC-CCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHHHHHHHH
Confidence            36788999999 8888876643 3344665  555799998889999999999999999854599999999999999999


Q ss_pred             HHHHHcCCcEEEEecCC
Q 019500          117 LEAMEAELDLVVCITEG  133 (340)
Q Consensus       117 ~ea~~~Gvk~vvi~t~G  133 (340)
                      +++++.|+|.+|+||+|
T Consensus        80 ~~~~~~gIk~i~nft~~   96 (96)
T PF02629_consen   80 DELVEAGIKGIVNFTPG   96 (96)
T ss_dssp             HHHHHTT-SEEEEESSS
T ss_pred             HHHHHcCCCEEEEeCCC
Confidence            99999999999999986

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>KOG1254 consensus ATP-citrate lyase [Energy production and conversion]

Probab=99.47  E-value=4.1e-13  Score=133.05  Aligned_cols=237  Identities=29%  Similarity=0.486  Sum_probs=187.4

Q ss_pred             cccccCHHHhhcc-CCCcEEEEecChhhHHHHHHHHHHcC-CcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCc
Q 019500           85 LPVFNTVAEAKAE-TKANASAIYVPPPFAAAAILEAMEAE-LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGV  162 (340)
Q Consensus        85 ~p~y~sl~dip~~-~~vDlavi~vp~~~v~~~v~ea~~~G-vk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi  162 (340)
                      +|+|+++.+...+ ...|+.+=+.....+.+--.++.+.| ++.+-++.+|.+|.+..++...+ ++.+.-++||-+.|.
T Consensus        55 IPv~~t~~~a~~~hp~~dv~~~faS~rsv~k~~m~~~k~~ki~lvAiiAegvpe~~~~kl~~~a-~~k~~~iiGPaTvgg  133 (600)
T KOG1254|consen   55 IPVEKTMENALVEHPEADVEPWFASTRSVAKPDMLALKRGKIGLVAIIAEGVPEADTRKLRAGA-EVKGVGIIGPATVGG  133 (600)
T ss_pred             eechhhHHHHHhcCcccceeechhhhhhhhcchHHHhhcCcceEEEEEecCCcHHHHHHHHhcc-ccccceEEeeeeecc
Confidence            6889876665543 24677777777777777777888876 88888899999998877766544 778889999999999


Q ss_pred             ccCC--Cc-ccc-----cCCCCCCCCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCC
Q 019500          163 IKPG--EC-KIG-----IMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADP  234 (340)
Q Consensus       163 ~~p~--~~-~~~-----~~~~~~~~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp  234 (340)
                      +-|.  +. |.+     .......+||.+++||.||++..++.+.-.+.=.|...-+.+|++.+.+.++.|-+--+.+||
T Consensus       134 VePg~fkignt~g~~dnil~~klyR~Gsv~~vS~sGGmsnE~nn~isrtt~g~~egiaiggd~~pgSTl~dhi~r~q~~~  213 (600)
T KOG1254|consen  134 VEPGVFKIGNTGGMMDNILNSKLYRPGSVIYVSRSGGMSNELNNIISRTTDGPYEGIAIGGDRYPGSTLIDHIPREQHDP  213 (600)
T ss_pred             ccCCccccCCCCcchhhhhhhcccCCccEEEEecCCCcchhhhhhhhheeccceeeeeccCCCccCchHhhhhhhhhccC
Confidence            9887  22 111     122345899999999999999999988777777899999999999999999999999999999


Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHh---CCCCCEEEEEeCCCCC---CCCcccccCcccccccccceecCCCCcHHHHH
Q 019500          235 QTEGIILIGEIGGTAEEDAAALIKES---GTEKPIVAFIAGLTAP---PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKI  308 (340)
Q Consensus       235 ~T~~I~ly~E~~g~~~~~~~~f~~a~---r~~KPVvvlk~Grs~~---~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~  308 (340)
                      .++-|++..|.+|+-+   =.|+++.   +..||+|++-.|..+.   ...++.|.|         +-+-.....+.++.
T Consensus       214 ~vk~Iv~Lgevgg~~e---y~~~e~~k~g~~tkPlVaw~~gtcA~~F~~evqfghag---------taa~~~~eka~akn  281 (600)
T KOG1254|consen  214 LVKFIVVLGEVGGDEE---YTFLEANKEGKITKPLVAWCIGTCADMFPLEVQFGHAG---------TAAFKNGEKAAAKN  281 (600)
T ss_pred             hhheEEeehhhcccce---eehhhhhhcCCccCCEEEEecCccccccchhhhccccc---------hhhhcchhhhhhcc
Confidence            9999999999877533   3566665   3899999999997553   134579988         65422324566788


Q ss_pred             HHHHHcCCeecCCHHHHHHHHHHHHH
Q 019500          309 KTLREAGVTVVESPAKIGAAMLEVFK  334 (340)
Q Consensus       309 a~~~qaGvv~v~~~~el~~~~~~~~~  334 (340)
                      ++++.+|+.+-+++++|.+..+..++
T Consensus       282 ~al~~ag~~vpesf~~l~~~i~~~~e  307 (600)
T KOG1254|consen  282 QALRDAGATVPESFDALGADIQETYE  307 (600)
T ss_pred             hhhhhccccCccchhhhhhhhccchh
Confidence            99999999999999999988877665

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=99.42  E-value=1.2e-12  Score=110.24  Aligned_cols=110  Identities=26%  Similarity=0.379  Sum_probs=86.8

Q ss_pred             eEEEEeCCCCCcchHHHHHHHH-cCCeEEEeeCCCC---CCce--------ecCcccccCHHHhhccCCCcEEEEecChh
Q 019500           43 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKK---GGTE--------HLGLPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~-~G~~vv~~VnP~~---~g~~--------i~G~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      ++|+|+|++||||+.+.+.+.+ .++++++.++++.   .|+.        -.|+++|.+++++.+.  +|++|+|+.|+
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~--~DVvIDfT~p~   78 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE--ADVVIDFTNPD   78 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH---SEEEEES-HH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc--CCEEEEcCChH
Confidence            5789999999999999999988 5899998887765   2232        3578999999999984  99999999999


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      .+.+.++.|.++|++. |+.|+||++++.+++.+++ ++  +. ++.||
T Consensus        79 ~~~~~~~~~~~~g~~~-ViGTTG~~~~~~~~l~~~a-~~--~~vl~a~N  123 (124)
T PF01113_consen   79 AVYDNLEYALKHGVPL-VIGTTGFSDEQIDELEELA-KK--IPVLIAPN  123 (124)
T ss_dssp             HHHHHHHHHHHHT-EE-EEE-SSSHHHHHHHHHHHT-TT--SEEEE-SS
T ss_pred             HhHHHHHHHHhCCCCE-EEECCCCCHHHHHHHHHHh-cc--CCEEEeCC
Confidence            9999999999999987 5699999999888888765 33  44 66777

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=99.28  E-value=3.8e-11  Score=113.72  Aligned_cols=118  Identities=21%  Similarity=0.315  Sum_probs=95.3

Q ss_pred             eEEEEeCCCCCcchHHHHHHHH-cCCeEEEeeC-CCC--CCc---ee-----cCcccccCHHHhhccCCCcEEEEecChh
Q 019500           43 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVT-PKK--GGT---EH-----LGLPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~-~G~~vv~~Vn-P~~--~g~---~i-----~G~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      ++|+|+|++|+||+.+++.+.+ .++++++.++ +..  .+.   ++     .|+++|.+++++..  .+|++|+|+||+
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~--~~DvVIdfT~p~   79 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVET--DPDVLIDFTTPE   79 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcC--CCCEEEECCChH
Confidence            6889999889999999999887 4899998888 321  111   11     46889999999932  599999999999


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccCC-CCccc
Q 019500          111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPNC-PGVIK  164 (340)
Q Consensus       111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPNc-~Gi~~  164 (340)
                      .+.+.++.|+++|++. ++.|+|+++++.+++.+++ +++|+. +++||. +|+..
T Consensus        80 ~~~~~~~~al~~g~~v-Vigttg~~~e~~~~l~~aA-~~~g~~v~~a~NfSlGv~l  133 (266)
T TIGR00036        80 GVLNHLKFALEHGVRL-VVGTTGFSEEDKQELADLA-EKAGIAAVIAPNFSIGVNL  133 (266)
T ss_pred             HHHHHHHHHHHCCCCE-EEECCCCCHHHHHHHHHHH-hcCCccEEEECcccHHHHH
Confidence            9999999999999887 5588999998888888876 777776 667886 66543

>PLN02775 Probable dihydrodipicolinate reductase

Probab=99.21  E-value=1.1e-10  Score=111.21  Aligned_cols=118  Identities=17%  Similarity=0.179  Sum_probs=95.9

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce----ec--Ccccc--cCHHHhhccC---CCc-EEEEecCh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE----HL--GLPVF--NTVAEAKAET---KAN-ASAIYVPP  109 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~----i~--G~p~y--~sl~dip~~~---~vD-lavi~vp~  109 (340)
                      .++|+|.|++||||+.+++.+.+.+++++..++++..|++    +.  ++++|  .+++++.+..   .+| ++|+|+.|
T Consensus        11 ~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT~P   90 (286)
T PLN02775         11 AIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNLIVVDYTLP   90 (286)
T ss_pred             CCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhccCCCEEEEECCCh
Confidence            4789999999999999999988889999988998775543    32  68899  8999988543   589 89999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccCC-CCccc
Q 019500          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPNC-PGVIK  164 (340)
Q Consensus       110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPNc-~Gi~~  164 (340)
                      +.+.++++.|+++|++. |+.|+||++++.+++.    ++.++. ++.||. +|+..
T Consensus        91 ~a~~~~~~~~~~~g~~~-VvGTTG~~~e~l~~~~----~~~~i~vv~apNfSiGv~l  142 (286)
T PLN02775         91 DAVNDNAELYCKNGLPF-VMGTTGGDRDRLLKDV----EESGVYAVIAPQMGKQVVA  142 (286)
T ss_pred             HHHHHHHHHHHHCCCCE-EEECCCCCHHHHHHHH----hcCCccEEEECcccHHHHH
Confidence            99999999999999998 5699999988665443    334554 778886 67653

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=99.21  E-value=1.1e-10  Score=109.33  Aligned_cols=117  Identities=22%  Similarity=0.313  Sum_probs=94.1

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCC-----------CceecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKG-----------GTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~-----------g~~i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      +++|+|+|++||||+.+.+.+.+. ++++++.++....           |....|+|+.+++.....  ++|++|+|+.|
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~--~~DV~IDFT~P   79 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKA--DADVLIDFTTP   79 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhccc--CCCEEEECCCc
Confidence            578999999999999999998876 6888877765431           124568999998666554  69999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCC-CCcc
Q 019500          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC-PGVI  163 (340)
Q Consensus       110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc-~Gi~  163 (340)
                      +.+.+.++.|.++|++. ||.|+||++++.+++.+++ ++-+ -|+.||. +|+.
T Consensus        80 ~~~~~~l~~~~~~~~~l-VIGTTGf~~e~~~~l~~~a-~~v~-vv~a~NfSiGvn  131 (266)
T COG0289          80 EATLENLEFALEHGKPL-VIGTTGFTEEQLEKLREAA-EKVP-VVIAPNFSLGVN  131 (266)
T ss_pred             hhhHHHHHHHHHcCCCe-EEECCCCCHHHHHHHHHHH-hhCC-EEEeccchHHHH
Confidence            99999999999999887 6699999999999888876 4432 3667885 6654

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=99.21  E-value=2.2e-11  Score=108.36  Aligned_cols=105  Identities=23%  Similarity=0.319  Sum_probs=88.8

Q ss_pred             CCCCCCCCccccc-----CcCCeEEEEeCCCCCcchHHHH--HHHHcCCeEEEe--eCCCCCCceecCccccc--CHHHh
Q 019500           26 SFTTAPPPAPAVF-----VDKNTRVICQGITGKNGTFHTE--QAIEYGTKMVGG--VTPKKGGTEHLGLPVFN--TVAEA   94 (340)
Q Consensus        26 ~~~~~~~~l~~lf-----~p~~iaViVvGasgk~G~~v~~--~l~~~G~~vv~~--VnP~~~g~~i~G~p~y~--sl~di   94 (340)
                      +|+.+.  |..+|     ..+.++|+++|+ |++|++++.  ...+.+++++..  +||+.-|.++.++|+|.  +|++.
T Consensus        65 GYnV~~--L~~ff~~~Lg~~~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~  141 (211)
T COG2344          65 GYNVKY--LRDFFDDLLGQDKTTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKF  141 (211)
T ss_pred             CccHHH--HHHHHHHHhCCCcceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHH
Confidence            455554  77766     457899999999 999999775  466789987754  78888789999999997  57777


Q ss_pred             hccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCC
Q 019500           95 KAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEG  133 (340)
Q Consensus        95 p~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~G  133 (340)
                      ..+.++|+++++||++.++++.+.++++|||++|.||+.
T Consensus       142 v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtPv  180 (211)
T COG2344         142 VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTPV  180 (211)
T ss_pred             HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccce
Confidence            766689999999999999999999999999999999985

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=99.08  E-value=1.2e-09  Score=103.05  Aligned_cols=116  Identities=20%  Similarity=0.256  Sum_probs=91.6

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCc---eecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e  118 (340)
                      ++|+|+|++|+||+.+++.+.+. ++++++.+++.....   ...|++.|.+++++.+  ++|++++|+||+.+.+.++.
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~--~~DvVid~t~p~~~~~~~~~   79 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLA--DADVLIDFTTPEATLENLEF   79 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhcc--CCCEEEECCCHHHHHHHHHH
Confidence            57889999999999999988874 788887777654111   2346788999999886  59999999999999999999


Q ss_pred             HHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCC-CCcc
Q 019500          119 AMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC-PGVI  163 (340)
Q Consensus       119 a~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc-~Gi~  163 (340)
                      |+++|++.+ +.|+|+++++..++.+++ ++.+ .++.||+ +|+.
T Consensus        80 al~~G~~vv-igttG~s~~~~~~l~~aa-~~~~-v~~s~n~s~g~~  122 (257)
T PRK00048         80 ALEHGKPLV-IGTTGFTEEQLAELEEAA-KKIP-VVIAPNFSIGVN  122 (257)
T ss_pred             HHHcCCCEE-EECCCCCHHHHHHHHHHh-cCCC-EEEECcchHHHH
Confidence            999999985 579999999988888743 4444 3555665 5544

>TIGR02130 dapB_plant dihydrodipicolinate reductase

Probab=99.05  E-value=1.3e-09  Score=103.36  Aligned_cols=116  Identities=16%  Similarity=0.194  Sum_probs=94.0

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEe-eCCCCCCce---ec--Cccc------ccCHHHhhccCCCc-EEEEecCh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGTE---HL--GLPV------FNTVAEAKAETKAN-ASAIYVPP  109 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~-VnP~~~g~~---i~--G~p~------y~sl~dip~~~~vD-lavi~vp~  109 (340)
                      ++|+|.|++||||+.+++.+.+.+++++.. ++++..+++   +.  ++|+      |.+++++.+. .+| ++|+|+.|
T Consensus         1 ~~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~-~~d~VvIDFT~P   79 (275)
T TIGR02130         1 IQIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAK-YPELICIDYTHP   79 (275)
T ss_pred             CeEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhh-cCCEEEEECCCh
Confidence            478899999999999999988889998866 887764332   22  6888      8899999863 488 99999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCc-EEEccCC-CCccc
Q 019500          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKT-RLVGPNC-PGVIK  164 (340)
Q Consensus       110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gi-rviGPNc-~Gi~~  164 (340)
                      +.+.+.++.|.++|++. |+.|+|+++++.+++.+.    .++ .++.||. +|+..
T Consensus        80 ~~~~~n~~~~~~~gv~~-ViGTTG~~~~~~~~l~~~----~~i~~l~apNfSiGv~l  131 (275)
T TIGR02130        80 SAVNDNAAFYGKHGIPF-VMGTTGGDREALAKLVAD----AKHPAVIAPNMAKQIVA  131 (275)
T ss_pred             HHHHHHHHHHHHCCCCE-EEcCCCCCHHHHHHHHHh----cCCCEEEECcccHHHHH
Confidence            99999999999999998 569999999988777543    234 4778886 67653

This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=98.96  E-value=3.8e-09  Score=86.88  Aligned_cols=109  Identities=22%  Similarity=0.293  Sum_probs=85.2

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc--CCeEEEeeCCCCCC-c---eecCcccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~--G~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      ++|.|+|+ |.+|+.+.+.+.+.  ++++++.++|+... +   +-.|+++|.|++++.+..++|+++|++|+..+.+.+
T Consensus         1 i~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~   79 (120)
T PF01408_consen    1 IRVGIIGA-GSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIA   79 (120)
T ss_dssp             EEEEEEST-SHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHH
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHH
Confidence            47888899 88999998887775  56788888887521 1   247999999999999866799999999999999999


Q ss_pred             HHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE
Q 019500          117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR  153 (340)
Q Consensus       117 ~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir  153 (340)
                      ++|+++|++.++=-.-..+.++.+++.+.+ +++|..
T Consensus        80 ~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a-~~~~~~  115 (120)
T PF01408_consen   80 KKALEAGKHVLVEKPLALTLEEAEELVEAA-KEKGVK  115 (120)
T ss_dssp             HHHHHTTSEEEEESSSSSSHHHHHHHHHHH-HHHTSC
T ss_pred             HHHHHcCCEEEEEcCCcCCHHHHHHHHHHH-HHhCCE
Confidence            999999996533222245667788888876 566654

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6

Probab=98.93  E-value=7.3e-09  Score=90.45  Aligned_cols=121  Identities=36%  Similarity=0.486  Sum_probs=96.6

Q ss_pred             EecChHHHHHHHHHHHhC--------------CCCceEEeecCCCCCC---------CCCHHHHHHHhhcCCCccEEEEE
Q 019500          186 VSRSGTLTYEAVFQTTAV--------------GLGQSTCVGIGGDPFN---------GTNFVDCVTKFIADPQTEGIILI  242 (340)
Q Consensus       186 vSQSG~l~~~~~~~~~~~--------------giG~S~~vs~Gn~a~~---------dv~~~d~l~~l~~Dp~T~~I~ly  242 (340)
                      ++.||+|+++.++...+.              +.+.+.++-+|.+.++         .....|.|+.+.+||+|++|++-
T Consensus         1 l~~GgtL~~Ea~~~i~~~~~~~~sn~~~~~~~g~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~vIlvd   80 (153)
T PF00549_consen    1 LYNGGTLAMEAMDLISDALGDVYSNFKLANPLGGGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVKVILVD   80 (153)
T ss_dssp             EESSHHHHHHHHHHHHHTTT------GCCEEETCTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTESEEEEE
T ss_pred             CcCcHHHHHHHHHHHHHhhccccccccccccCCCCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCccEEEEE
Confidence            578999999999999999              9999999999999865         67899999999999999999999


Q ss_pred             EccC-CCcHHHHHHHHHHhC------CCCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcC
Q 019500          243 GEIG-GTAEEDAAALIKESG------TEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAG  315 (340)
Q Consensus       243 ~E~~-g~~~~~~~~f~~a~r------~~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaG  315 (340)
                      +|.+ |..+.-+..++++.+      +.||||+.-.|+.+.++.++.|.+                        +|+++|
T Consensus        81 ~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~dpq~~~~~~~------------------------~L~~~G  136 (153)
T PF00549_consen   81 IVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNADPQGRMGQAG------------------------ALEDAG  136 (153)
T ss_dssp             EESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCHTTSCHHHHH------------------------HHHCTT
T ss_pred             eccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeecCCCCCcHHHHH------------------------HHHhCC
Confidence            9987 777677778888765      478999999998887444444433                        455666


Q ss_pred             CeecCCHHHHHHHHH
Q 019500          316 VTVVESPAKIGAAML  330 (340)
Q Consensus       316 vv~v~~~~el~~~~~  330 (340)
                      +..+.+-++-..++.
T Consensus       137 ~~v~~s~~~A~~~A~  151 (153)
T PF00549_consen  137 VIVAESNAQAARAAG  151 (153)
T ss_dssp             CSCHHHHHHHHHHHT
T ss_pred             CcccccHHHHHHHcC
Confidence            666666655554443

2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....

>PRK11579 putative oxidoreductase; Provisional

Probab=98.59  E-value=4.7e-07  Score=88.50  Aligned_cols=111  Identities=15%  Similarity=0.106  Sum_probs=83.7

Q ss_pred             CeEEEEeCCCCCcch-HHHHHHHHc-CCeEEEeeCCCCC--CceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHH
Q 019500           42 NTRVICQGITGKNGT-FHTEQAIEY-GTKMVGGVTPKKG--GTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAIL  117 (340)
Q Consensus        42 ~iaViVvGasgk~G~-~v~~~l~~~-G~~vv~~VnP~~~--g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~  117 (340)
                      .++|.|+|+ |.+|+ .+...+.+. ++++++.++++..  .....+.++|.+++++.+..++|+++|++|+..+.+.+.
T Consensus         4 ~irvgiiG~-G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~   82 (346)
T PRK11579          4 KIRVGLIGY-GYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAK   82 (346)
T ss_pred             cceEEEECC-CHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH
Confidence            578999999 88887 466766664 7888878877641  112346789999999987557999999999999999999


Q ss_pred             HHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEE
Q 019500          118 EAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL  154 (340)
Q Consensus       118 ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girv  154 (340)
                      +|+++|.+.++=-.-..+.++.+++.+++ +++|+.+
T Consensus        83 ~al~aGkhVl~EKPla~t~~ea~~l~~~a-~~~g~~l  118 (346)
T PRK11579         83 AALEAGKHVVVDKPFTVTLSQARELDALA-KSAGRVL  118 (346)
T ss_pred             HHHHCCCeEEEeCCCCCCHHHHHHHHHHH-HHhCCEE
Confidence            99999987643222245566777887776 6777664

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=98.50  E-value=6.5e-07  Score=84.81  Aligned_cols=116  Identities=15%  Similarity=0.149  Sum_probs=84.7

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCc---e-e-cCcccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT---E-H-LGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~---~-i-~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      ++|.|+|+ |++|+.+++.+.+. +.++++.+++....+   + . .+.++|.+++++ . .++|++++|+|+..+.+.+
T Consensus         2 ~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l-~-~~~DvVve~t~~~~~~e~~   78 (265)
T PRK13303          2 MKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDAL-P-QRPDLVVECAGHAALKEHV   78 (265)
T ss_pred             cEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHh-c-cCCCEEEECCCHHHHHHHH
Confidence            57889999 99999999998876 667665554432101   1 1 267899999999 4 3699999999999999999


Q ss_pred             HHHHHcCCcEEEEecCC-CChhh-HHHHHHHHhccCCcE-EEccCCCCcc
Q 019500          117 LEAMEAELDLVVCITEG-IPQHD-MVRVKAALNNQSKTR-LVGPNCPGVI  163 (340)
Q Consensus       117 ~ea~~~Gvk~vvi~t~G-f~e~~-~~~l~~~aar~~gir-viGPNc~Gi~  163 (340)
                      .+|+++|++.+ +.++| +++.+ ..+|.+.+ +++|.+ .+-|.+.|.+
T Consensus        79 ~~aL~aGk~Vv-i~s~~Al~d~~~~~~L~~~A-~~~g~~l~v~sga~gg~  126 (265)
T PRK13303         79 VPILKAGIDCA-VISVGALADEALRERLEQAA-EAGGARLHLLSGAIGGI  126 (265)
T ss_pred             HHHHHcCCCEE-EeChHHhcCHHHHHHHHHHH-HHCCCEEEEeChHhhCH
Confidence            99999998874 46766 55444 45666665 677766 4445555544

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.48  E-value=8.5e-07  Score=83.98  Aligned_cols=108  Identities=7%  Similarity=0.106  Sum_probs=82.8

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc--CCeEEEeeCCCCCC-c---eecCcccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~--G~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      ++|.|+|+ |++|+.+++.+.+.  ++++++.+|++... +   +..|.+.|.+++++..  ++|++++|+|++.+.+.+
T Consensus         2 mrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~--~~DvVvi~a~~~~~~~~~   78 (265)
T PRK13304          2 LKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVE--DVDLVVECASVNAVEEVV   78 (265)
T ss_pred             CEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhc--CCCEEEEcCChHHHHHHH
Confidence            47888898 99999999988875  57778778876410 1   2346788999999974  699999999999999999


Q ss_pred             HHHHHcCCcEEEEecCCC--ChhhHHHHHHHHhccCCcEEE
Q 019500          117 LEAMEAELDLVVCITEGI--PQHDMVRVKAALNNQSKTRLV  155 (340)
Q Consensus       117 ~ea~~~Gvk~vvi~t~Gf--~e~~~~~l~~~aar~~girvi  155 (340)
                      ++++++|.+. ++.+.|.  .++..+++.+++ +++|.++.
T Consensus        79 ~~al~~Gk~V-vv~s~gAl~d~~~~~~L~~aA-~~~g~~l~  117 (265)
T PRK13304         79 PKSLENGKDV-IIMSVGALADKELFLKLYKLA-KENNCKIY  117 (265)
T ss_pred             HHHHHcCCCE-EEEchHHhcCHHHHHHHHHHH-HHcCCEEE
Confidence            9999999876 4466653  334456677765 77887764

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=98.47  E-value=9e-07  Score=85.32  Aligned_cols=117  Identities=21%  Similarity=0.267  Sum_probs=85.2

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcC--CeEEEeeCCCCCC-c---eecCcc-cccCHHHhhccCCCcEEEEecChhhHH
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPKKGG-T---EHLGLP-VFNTVAEAKAETKANASAIYVPPPFAA  113 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G--~~vv~~VnP~~~g-~---~i~G~p-~y~sl~dip~~~~vDlavi~vp~~~v~  113 (340)
                      +.++|.|+|+.+-.+..+...+.+.+  +.+++.++++... +   +-.|++ +|.|++++.+..++|+++|++|+..+.
T Consensus         2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~   81 (342)
T COG0673           2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHA   81 (342)
T ss_pred             CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhH
Confidence            46788999994344566888888764  5788887776521 1   246775 999999999876699999999999999


Q ss_pred             HHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          114 AAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       114 ~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      +.+.+|+++|.+.++=-.-..+.+|.++|.+++ +++|+. .+|-|
T Consensus        82 e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a-~~~~~~l~v~~~  126 (342)
T COG0673          82 ELALAALEAGKHVLCEKPLALTLEEAEELVELA-RKAGVKLMVGFN  126 (342)
T ss_pred             HHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHH-HHcCCceeeehh
Confidence            999999999997633111134556777788776 566654 55555

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.38  E-value=1.2e-06  Score=80.24  Aligned_cols=114  Identities=18%  Similarity=0.223  Sum_probs=82.0

Q ss_pred             ccccCCCCCCCCCC--CCccccc-CcCCeEEEEeCCCCCcchHHHHHH--HHcCCeEEEeeCC--CCCCceecCccccc-
Q 019500           18 EICCGQSRSFTTAP--PPAPAVF-VDKNTRVICQGITGKNGTFHTEQA--IEYGTKMVGGVTP--KKGGTEHLGLPVFN-   89 (340)
Q Consensus        18 ~~~~~~~~~~~~~~--~~l~~lf-~p~~iaViVvGasgk~G~~v~~~l--~~~G~~vv~~VnP--~~~g~~i~G~p~y~-   89 (340)
                      |.---+...|+...  ..++.+| ..+..+|+|+|+ |.+|..+.+.+  .+.|+++++.+++  ...+..+.|+|++. 
T Consensus        57 ~~~G~~~~gy~v~~l~~~~~~~l~~~~~~rV~IIGa-G~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~  135 (213)
T PRK05472         57 GEFGKRGVGYNVEELLEFIEKILGLDRTWNVALVGA-GNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHI  135 (213)
T ss_pred             HhcCCCCCCeeHHHHHHHHHHHhCCCCCcEEEEECC-CHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCH
Confidence            43334455566543  1144555 234578999999 99998888753  2468998876654  44445677888764 


Q ss_pred             -CHHHhhccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500           90 -TVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus        90 -sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                       ++.++..++++|.+++++|.....++.+.+.++|++.+|.+++
T Consensus       136 ~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p  179 (213)
T PRK05472        136 DELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAP  179 (213)
T ss_pred             HHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCc
Confidence             5666655457999999999999999999999999999998875

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.34  E-value=2.9e-06  Score=80.70  Aligned_cols=112  Identities=13%  Similarity=0.108  Sum_probs=82.4

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHH--cCCeEEEeeCCCCCC-c---eecC-cccccCHHHhhccCCCcEEEEecChhhHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIE--YGTKMVGGVTPKKGG-T---EHLG-LPVFNTVAEAKAETKANASAIYVPPPFAAA  114 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~--~G~~vv~~VnP~~~g-~---~i~G-~p~y~sl~dip~~~~vDlavi~vp~~~v~~  114 (340)
                      .++|.|+|+ |++|+.+++++.+  .++++++..++.... +   +-.| .+.|.+++++..  ++|++++++|.+.+.+
T Consensus         6 ~irIGIIG~-G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~--~~D~Vvi~tp~~~h~e   82 (271)
T PRK13302          6 ELRVAIAGL-GAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLAT--HADIVVEAAPASVLRA   82 (271)
T ss_pred             eeEEEEECc-cHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhc--CCCEEEECCCcHHHHH
Confidence            467888899 9999999999987  378877666765410 1   1234 467899999976  5999999999999999


Q ss_pred             HHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEE-EccCC
Q 019500          115 AILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL-VGPNC  159 (340)
Q Consensus       115 ~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girv-iGPNc  159 (340)
                      ..++++++|.+.+ +.+.|- -.+.+++.+.+ +++|.++ ++|..
T Consensus        83 ~~~~aL~aGk~Vi-~~s~ga-l~~~~~L~~~A-~~~g~~l~v~sGa  125 (271)
T PRK13302         83 IVEPVLAAGKKAI-VLSVGA-LLRNEDLIDLA-RQNGGQIIVPTGA  125 (271)
T ss_pred             HHHHHHHcCCcEE-Eecchh-HHhHHHHHHHH-HHcCCEEEEcchH
Confidence            9999999998764 455442 12445666665 6788775 55443

>PRK10206 putative oxidoreductase; Provisional

Probab=98.33  E-value=3.1e-06  Score=83.00  Aligned_cols=111  Identities=9%  Similarity=-0.000  Sum_probs=79.8

Q ss_pred             CeEEEEeCCCCCcc-hHHHHHHHH--cCCeEEEeeCCCCCC----ceecCcccccCHHHhhccCCCcEEEEecChhhHHH
Q 019500           42 NTRVICQGITGKNG-TFHTEQAIE--YGTKMVGGVTPKKGG----TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA  114 (340)
Q Consensus        42 ~iaViVvGasgk~G-~~v~~~l~~--~G~~vv~~VnP~~~g----~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~  114 (340)
                      +++|.|+|+ |.++ +.+...+.+  .++++++.++++...    ++..+.+.|.+++++.+..++|+++|++|+..+.+
T Consensus         1 ~irvgiiG~-G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~   79 (344)
T PRK10206          1 VINCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFE   79 (344)
T ss_pred             CeEEEEECC-CHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHH
Confidence            467888999 7654 446665543  367888777764310    12335789999999997657999999999999999


Q ss_pred             HHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEE
Q 019500          115 AILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL  154 (340)
Q Consensus       115 ~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girv  154 (340)
                      .+.+|+++|.+.++=-.-..+.++.+++.+++ +++|+.+
T Consensus        80 ~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a-~~~~~~l  118 (344)
T PRK10206         80 YAKRALEAGKNVLVEKPFTPTLAEAKELFALA-KSKGLTV  118 (344)
T ss_pred             HHHHHHHcCCcEEEecCCcCCHHHHHHHHHHH-HHhCCEE
Confidence            99999999977533111234556777787776 6777664

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=98.22  E-value=6.3e-06  Score=81.00  Aligned_cols=108  Identities=13%  Similarity=0.193  Sum_probs=81.3

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHc--CCeEEEeeCCCCCC-c---eecCcccccCHHHhhccCCCcEEEEec----Chh
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYV----PPP  110 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~--G~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~~~~vDlavi~v----p~~  110 (340)
                      +.++|+|+|+  .+|+.+++.+.+.  ++++++.++++... +   +-+|+|.|.+++|+++  ++|+++|++    |+.
T Consensus         2 ~~~rVgViG~--~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~--d~Di~~V~ipt~~P~~   77 (343)
T TIGR01761         2 DVQSVVVCGT--RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPD--DIDIACVVVRSAIVGG   77 (343)
T ss_pred             CCcEEEEEeH--HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhc--CCCEEEEEeCCCCCCc
Confidence            4578889998  5799999888774  58898888876421 1   2468999999999996  477777776    457


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEE
Q 019500          111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (340)
Q Consensus       111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi  155 (340)
                      .+.+++.+|+++|++.++  ---+..++.+++.+++ +++|+.+.
T Consensus        78 ~H~e~a~~aL~aGkHVL~--EKPla~~Ea~el~~~A-~~~g~~l~  119 (343)
T TIGR01761        78 QGSALARALLARGIHVLQ--EHPLHPRDIQDLLRLA-ERQGRRYL  119 (343)
T ss_pred             cHHHHHHHHHhCCCeEEE--cCCCCHHHHHHHHHHH-HHcCCEEE
Confidence            889999999999987632  2235556777888776 67787755

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=98.12  E-value=0.00027  Score=71.88  Aligned_cols=251  Identities=14%  Similarity=0.128  Sum_probs=146.3

Q ss_pred             EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecC----hhhHHHHHHHHH
Q 019500           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVP----PPFAAAAILEAM  120 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp----~~~v~~~v~ea~  120 (340)
                      |.++.=||.++..+...+.+.|+..-+.|+-..  +-.  +..-+-++-+.+..+.++++++.-    +....++++.+.
T Consensus       153 valvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn--~~d--~~~~d~l~~l~~D~~t~~I~ly~E~~~~~~~f~~aa~~a~  228 (447)
T TIGR02717       153 IAFISQSGALLTALLDWAEKNGVGFSYFVSLGN--KAD--IDESDLLEYLADDPDTKVILLYLEGIKDGRKFLKTAREIS  228 (447)
T ss_pred             EEEEechHHHHHHHHHHHHhcCCCcceEEECCc--hhh--CCHHHHHHHHhhCCCCCEEEEEecCCCCHHHHHHHHHHHc
Confidence            444487887777777777776554333454432  111  111111222223235788888865    345556666664


Q ss_pred             HcCCcEEEEecCCCChhhH-------------HHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCCCCCCCcEEEEe
Q 019500          121 EAELDLVVCITEGIPQHDM-------------VRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVS  187 (340)
Q Consensus       121 ~~Gvk~vvi~t~Gf~e~~~-------------~~l~~~aar~~girviGPNc~Gi~~p~~~~~~~~~~~~~~~G~valvS  187 (340)
                      + +.+ +|++-+|-++.+.             .+..+.+.++.|+..+ .+.--+++..   ..+.....++-.+||+||
T Consensus       229 ~-~KP-Vv~~k~Grs~~g~~aa~sHtgalag~~~~~~a~~~~~Gv~~~-~~~~el~~~~---~~l~~~~~~~g~rvaivs  302 (447)
T TIGR02717       229 K-KKP-IVVLKSGTSEAGAKAASSHTGALAGSDEAYDAAFKQAGVIRA-DSIEELFDLA---RLLSNQPLPKGNRVAIIT  302 (447)
T ss_pred             C-CCC-EEEEecCCChhhhhhhhhccccccChHHHHHHHHHHCCeEEe-CCHHHHHHHH---HHHhcCCCCCCCeEEEEE
Confidence            4 544 5667777655432             1233333377776655 2211222211   111111224556799999


Q ss_pred             cChHHHHHHHHHHHhCCCCceE---------------EeecCCCCC-----CCCCHHHHHHHhhcCCCccEEEEEEccC-
Q 019500          188 RSGTLTYEAVFQTTAVGLGQST---------------CVGIGGDPF-----NGTNFVDCVTKFIADPQTEGIILIGEIG-  246 (340)
Q Consensus       188 QSG~l~~~~~~~~~~~giG~S~---------------~vs~Gn~a~-----~dv~~~d~l~~l~~Dp~T~~I~ly~E~~-  246 (340)
                      -||+.+..+.|.+.+.|+-+-.               ..+.+|-.+     ..-.+.+.|+.+.+||++.+|++.+-.. 
T Consensus       303 ~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~lp~~~~~~NPlDl~~~~~~~~~~~al~~l~~dp~vd~Vlv~~~~~~  382 (447)
T TIGR02717       303 NAGGPGVIATDACEENGLELAELSEATKNKLRNILPPEASIKNPVDVLGDATPERYAKALKTVAEDENVDGVVVVLTPTA  382 (447)
T ss_pred             CCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhCccccccCCCEecCCCCCHHHHHHHHHHHHcCCCCCEEEEEccCCc
Confidence            9999999999999999987652               345666431     1224678999999999999998654311 


Q ss_pred             -CCcHHHHHHHHHHhC-C-CCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHH
Q 019500          247 -GTAEEDAAALIKESG-T-EKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPA  323 (340)
Q Consensus       247 -g~~~~~~~~f~~a~r-~-~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~  323 (340)
                       .....-.+.+.++.+ . +|||++.-.|.                            ...+.....|+++|+...++++
T Consensus       383 ~~~~~~~a~~l~~~~~~~~~KPvv~~~~gg----------------------------~~~~~~~~~L~~~Gip~f~~p~  434 (447)
T TIGR02717       383 MTDPEEVAKGIIEGAKKSNEKPVVAGFMGG----------------------------KSVDPAKRILEENGIPNYTFPE  434 (447)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCcEEEEecCC----------------------------ccHHHHHHHHHhCCCCccCCHH
Confidence             111223344444444 3 89997764331                            1223446668899999999999


Q ss_pred             HHHHHHHHHH
Q 019500          324 KIGAAMLEVF  333 (340)
Q Consensus       324 el~~~~~~~~  333 (340)
                      +-..++..++
T Consensus       435 ~A~~al~~~~  444 (447)
T TIGR02717       435 RAVKALSALY  444 (447)
T ss_pred             HHHHHHHHHH
Confidence            9887776544

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=98.09  E-value=1.5e-05  Score=77.70  Aligned_cols=118  Identities=12%  Similarity=0.119  Sum_probs=80.5

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCceecCccccc--CHHHhhccCCCcEEEEecChhhHHHHHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFN--TVAEAKAETKANASAIYVPPPFAAAAILE  118 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~i~G~p~y~--sl~dip~~~~vDlavi~vp~~~v~~~v~e  118 (340)
                      +++|+|+|. |++|+.+.+.+.+. ++++++.++++..+.--.+.++|.  +..++..  ++|++++|+|+....+.+..
T Consensus         3 kIRVgIVG~-GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~--~iDVViIctPs~th~~~~~~   79 (324)
T TIGR01921         3 KIRAAIVGY-GNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLD--DVDVLILCMGSATDIPEQAP   79 (324)
T ss_pred             CcEEEEEee-cHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhcc--CCCEEEEcCCCccCHHHHHH
Confidence            589999999 99999999988775 789887777663111112234444  5555543  69999999999999999999


Q ss_pred             HHHcCCcEEEEecCCCCh-hhHHHHHHHHhcc-CCcEEEccC-CCCcc
Q 019500          119 AMEAELDLVVCITEGIPQ-HDMVRVKAALNNQ-SKTRLVGPN-CPGVI  163 (340)
Q Consensus       119 a~~~Gvk~vvi~t~Gf~e-~~~~~l~~~aar~-~girviGPN-c~Gi~  163 (340)
                      ++++|++.+.-+-..... +..+++.+++ ++ .++.+++-. =.|++
T Consensus        80 ~L~aG~NVV~s~~~h~~~p~~~~~ld~AA-k~~g~vsvi~~GwDPG~~  126 (324)
T TIGR01921        80 YFAQFANTVDSFDNHRDIPRHRQVMDAAA-KAAGNVSVISTGWDPGMF  126 (324)
T ss_pred             HHHcCCCEEECCCcccCCHHHHHHHHHHH-HHcCCEEEEECCCCcChH
Confidence            999999985433222221 2244555554 54 688898822 24544

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=97.87  E-value=6.2e-05  Score=83.18  Aligned_cols=118  Identities=14%  Similarity=0.156  Sum_probs=81.8

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHc-CCe------------EEEeeCCCCCC-ce----ecC---ccc-ccCHHHhhcc-
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEY-GTK------------MVGGVTPKKGG-TE----HLG---LPV-FNTVAEAKAE-   97 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~-G~~------------vv~~VnP~~~g-~~----i~G---~p~-y~sl~dip~~-   97 (340)
                      ++-+|+|+|+ |++|+.+++.|.+. +++            ++...++.... ++    ..+   +++ |.+.+++.+. 
T Consensus       568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v  646 (1042)
T PLN02819        568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYV  646 (1042)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhh
Confidence            3556778899 99999999999875 333            35556654310 11    113   445 6677777641 


Q ss_pred             CCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCC
Q 019500           98 TKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG  166 (340)
Q Consensus        98 ~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~  166 (340)
                      .++|+||+++|+..+.++++.|+++|++.+   +..+..+++.++.+.+ +++|+.++ |.| | ++|+
T Consensus       647 ~~~DaVIsalP~~~H~~VAkaAieaGkHvv---~eky~~~e~~~L~e~A-k~AGV~~m-~e~-G-lDPG  708 (1042)
T PLN02819        647 SQVDVVISLLPASCHAVVAKACIELKKHLV---TASYVSEEMSALDSKA-KEAGITIL-CEM-G-LDPG  708 (1042)
T ss_pred             cCCCEEEECCCchhhHHHHHHHHHcCCCEE---ECcCCHHHHHHHHHHH-HHcCCEEE-ECC-c-cCHH
Confidence            259999999999999999999999999873   3336666677777776 77888876 333 3 5554

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.85  E-value=4.3e-05  Score=66.90  Aligned_cols=108  Identities=16%  Similarity=0.195  Sum_probs=71.7

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccCCCcEEEEecCh-hhHHHHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPP-PFAAAAILE  118 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~~vDlavi~vp~-~~v~~~v~e  118 (340)
                      .+|.++|. |+||+.++++|.+.||++. ..|+.... ++  -.|.....|++|+.+  ..|++++++|. +.+.+++..
T Consensus         2 ~~Ig~IGl-G~mG~~~a~~L~~~g~~v~-~~d~~~~~~~~~~~~g~~~~~s~~e~~~--~~dvvi~~v~~~~~v~~v~~~   77 (163)
T PF03446_consen    2 MKIGFIGL-GNMGSAMARNLAKAGYEVT-VYDRSPEKAEALAEAGAEVADSPAEAAE--QADVVILCVPDDDAVEAVLFG   77 (163)
T ss_dssp             BEEEEE---SHHHHHHHHHHHHTTTEEE-EEESSHHHHHHHHHTTEEEESSHHHHHH--HBSEEEE-SSSHHHHHHHHHC
T ss_pred             CEEEEEch-HHHHHHHHHHHHhcCCeEE-eeccchhhhhhhHHhhhhhhhhhhhHhh--cccceEeecccchhhhhhhhh
Confidence            45777799 9999999999999999954 44544210 11  257889999999987  48999999998 555666666


Q ss_pred             --HHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEE
Q 019500          119 --AMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (340)
Q Consensus       119 --a~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi  155 (340)
                        .... .-..++|-++-.+.+..+++.+.+ ++.|++++
T Consensus        78 ~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~-~~~g~~~v  116 (163)
T PF03446_consen   78 ENILAGLRPGKIIIDMSTISPETSRELAERL-AAKGVRYV  116 (163)
T ss_dssp             TTHGGGS-TTEEEEE-SS--HHHHHHHHHHH-HHTTEEEE
T ss_pred             hHHhhccccceEEEecCCcchhhhhhhhhhh-hhccceee
Confidence              4443 345556556666666667777666 56777766

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=97.69  E-value=0.00023  Score=69.63  Aligned_cols=119  Identities=24%  Similarity=0.265  Sum_probs=76.8

Q ss_pred             ccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc---eecCcccccCHHHhhccCCCcEEEEecChhhHH
Q 019500           37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAA  113 (340)
Q Consensus        37 lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~  113 (340)
                      .+..++  |.|+|. |++|+.++++|++.|++++....+.....   +-.|+.+. +++++.+  ..|++++++|+....
T Consensus        14 ~L~gkt--IgIIG~-GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~--~ADVVvLaVPd~~~~   87 (330)
T PRK05479         14 LIKGKK--VAIIGY-GSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAK--WADVIMILLPDEVQA   87 (330)
T ss_pred             hhCCCE--EEEEee-HHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHh--cCCEEEEcCCHHHHH
Confidence            344555  455599 99999999999999998664333322101   12466655 7888876  589999999999888


Q ss_pred             HHH-HHHHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCccc
Q 019500          114 AAI-LEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK  164 (340)
Q Consensus       114 ~~v-~ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~  164 (340)
                      +++ ++.... .-..+++++.||+-....   ........+-.+-||+.|-..
T Consensus        88 ~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~---~~p~~~~~Vi~vaPn~Pg~~v  137 (330)
T PRK05479         88 EVYEEEIEPNLKEGAALAFAHGFNIHFGQ---IVPPADVDVIMVAPKGPGHLV  137 (330)
T ss_pred             HHHHHHHHhcCCCCCEEEECCCCChhhce---eccCCCCcEEEeCCCCCchhh
Confidence            887 444433 223466899999754322   111123345555699887643

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=97.67  E-value=0.00022  Score=70.10  Aligned_cols=93  Identities=13%  Similarity=0.139  Sum_probs=67.9

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCceec---C-cc-----cccCHHHhhccCCCcEEEEecChhh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL---G-LP-----VFNTVAEAKAETKANASAIYVPPPF  111 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~i~---G-~p-----~y~sl~dip~~~~vDlavi~vp~~~  111 (340)
                      +++|+|+|++|.+|+.+++.+.+. ++++++.++++..++.+.   + ++     .|.++++... .++|++++|+|...
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~-~~vD~Vf~alP~~~   80 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEIL-AGADVVFLALPHGV   80 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHh-cCCCEEEECCCcHH
Confidence            367888899999999999999886 678777777543333221   1 22     3545544322 25999999999999


Q ss_pred             HHHHHHHHHHcCCcEEEEecCCCCh
Q 019500          112 AAAAILEAMEAELDLVVCITEGIPQ  136 (340)
Q Consensus       112 v~~~v~ea~~~Gvk~vvi~t~Gf~e  136 (340)
                      +.+.+.++.++|++. |-.++.|.-
T Consensus        81 ~~~~v~~a~~aG~~V-ID~S~~fR~  104 (343)
T PRK00436         81 SMDLAPQLLEAGVKV-IDLSADFRL  104 (343)
T ss_pred             HHHHHHHHHhCCCEE-EECCcccCC
Confidence            999999999999765 677877753

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.65  E-value=0.00047  Score=63.74  Aligned_cols=111  Identities=13%  Similarity=0.156  Sum_probs=74.6

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCC---eEEEeeCCC-CC-Cce---ecCcccccCHHHhhccCCCcEEEEecChhhHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPK-KG-GTE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAA  113 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~---~vv~~VnP~-~~-g~~---i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~  113 (340)
                      .++|.|+|+ |++|+.+++.+.+.+.   +.++.++++ .. .+.   -.|++.+.+.+++.+  +.|++++++|+..+.
T Consensus         4 ~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~DiViiavp~~~~~   80 (245)
T PRK07634          4 KHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVT--SVDTIVLAMPPSAHE   80 (245)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHh--cCCEEEEecCHHHHH
Confidence            457788898 9999999998887653   324455542 10 011   246777888888775  589999999999999


Q ss_pred             HHHHHHHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccC
Q 019500          114 AAILEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN  158 (340)
Q Consensus       114 ~~v~ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPN  158 (340)
                      +++++.... .-+.+|-++.|++.+.   |++.......+-..+||
T Consensus        81 ~v~~~l~~~~~~~~vis~~~gi~~~~---l~~~~~~~~~v~r~~Pn  123 (245)
T PRK07634         81 ELLAELSPLLSNQLVVTVAAGIGPSY---LEERLPKGTPVAWIMPN  123 (245)
T ss_pred             HHHHHHHhhccCCEEEEECCCCCHHH---HHHHcCCCCeEEEECCc
Confidence            999887642 2256677778987554   33332112234457887

>TIGR03855 NAD_NadX aspartate dehydrogenase

Probab=97.65  E-value=0.00022  Score=66.33  Aligned_cols=95  Identities=11%  Similarity=0.133  Sum_probs=69.5

Q ss_pred             CCeEEEeeCCCCCC-c---eecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCC-CCh-hhH
Q 019500           66 GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEG-IPQ-HDM  139 (340)
Q Consensus        66 G~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~G-f~e-~~~  139 (340)
                      ++++++..||+... +   +..|.++|.+++++..+ ++|++++++|+..+.+...+++++|.+.++ .+.| +.+ ++.
T Consensus         1 ~~eLvaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~-~vDaVviatp~~~H~e~a~~aL~aGkhVl~-~s~gAlad~e~~   78 (229)
T TIGR03855         1 NFEIAAVYDRNPKDAKELAERCGAKIVSDFDEFLPE-DVDIVVEAASQEAVKEYAEKILKNGKDLLI-MSVGALADRELR   78 (229)
T ss_pred             CeEEEEEECCCHHHHHHHHHHhCCceECCHHHHhcC-CCCEEEECCChHHHHHHHHHHHHCCCCEEE-ECCcccCCHHHH
Confidence            35667777776411 1   23578899999999753 699999999999999999999999998755 6766 433 556


Q ss_pred             HHHHHHHhccCCcE-EEccCCCCcc
Q 019500          140 VRVKAALNNQSKTR-LVGPNCPGVI  163 (340)
Q Consensus       140 ~~l~~~aar~~gir-viGPNc~Gi~  163 (340)
                      +++.+.+ +++|.+ .++++.+|..
T Consensus        79 ~~l~~aA-~~~g~~l~i~sGai~g~  102 (229)
T TIGR03855        79 ERLREVA-RSSGRKVYIPSGAIGGL  102 (229)
T ss_pred             HHHHHHH-HhcCCEEEEChHHHHHH
Confidence            7777776 667766 5566555443

Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=97.60  E-value=0.00032  Score=68.20  Aligned_cols=112  Identities=19%  Similarity=0.204  Sum_probs=72.6

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccCCCcEEEEecChh-hHHHHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAILEA  119 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~~vDlavi~vp~~-~v~~~v~ea  119 (340)
                      +|.|+|+ |+||+.++++|.+.|++++...++.... +.  -.|+.++ +..++.+  ..|++++++||+ ......++.
T Consensus         5 kIgiIG~-G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~--~ADiVvLaVpp~~~~~~v~~ei   80 (314)
T TIGR00465         5 TVAIIGY-GSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIP--QADLIMNLLPDEVQHEVYEAEI   80 (314)
T ss_pred             EEEEEeE-cHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHh--cCCEEEEeCCcHhHHHHHHHHH
Confidence            3556698 9999999999999999866455554210 11  2466655 4777655  589999999999 544444444


Q ss_pred             HHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCc
Q 019500          120 MEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGV  162 (340)
Q Consensus       120 ~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi  162 (340)
                      ... .-+.+|.++.||+-+...   ...-....+-.+-||+.|.
T Consensus        81 ~~~l~~g~iVs~aaG~~i~~~~---~~~~~~~~VvrvmPn~p~~  121 (314)
T TIGR00465        81 QPLLKEGKTLGFSHGFNIHFVQ---IVPPKDVDVVMVAPKGPGT  121 (314)
T ss_pred             HhhCCCCcEEEEeCCccHhhcc---ccCCCCCcEEEECCCCCcH
Confidence            432 123478899999754432   2221223466678999885

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=97.58  E-value=0.00025  Score=68.14  Aligned_cols=128  Identities=17%  Similarity=0.309  Sum_probs=90.5

Q ss_pred             CCCCCCCcccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC---ceecCcccccCHHHhhccCCCcEE
Q 019500           27 FTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG---TEHLGLPVFNTVAEAKAETKANAS  103 (340)
Q Consensus        27 ~~~~~~~l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g---~~i~G~p~y~sl~dip~~~~vDla  103 (340)
                      |.|.-.+++ +++.+.++||  |. |..|+.+..||++.|.+++.++-+....   .+-.|..+|. ++|+..  ..|++
T Consensus         6 yyd~da~l~-~LkgK~iaII--GY-GsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~-v~ea~k--~ADvi   78 (338)
T COG0059           6 YYDEDADLD-LLKGKKVAII--GY-GSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYT-VEEAAK--RADVV   78 (338)
T ss_pred             eecccCChh-HhcCCeEEEE--ec-ChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeec-HHHHhh--cCCEE
Confidence            334445577 7777766655  98 8899999999999999977777665410   1347888875 777665  48999


Q ss_pred             EEecChhhHHHHHHHHHHcCC--cEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCccc
Q 019500          104 AIYVPPPFAAAAILEAMEAEL--DLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK  164 (340)
Q Consensus       104 vi~vp~~~v~~~v~ea~~~Gv--k~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~  164 (340)
                      ++.+|.+...++.++-++-..  ..++.|+.||+-.-.. + +- .+.-.+-++-|-|+|-..
T Consensus        79 m~L~PDe~q~~vy~~~I~p~Lk~G~aL~FaHGfNihf~~-i-~p-pkdvdV~MVAPKgPG~~V  138 (338)
T COG0059          79 MILLPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFGL-I-VP-PKDVDVIMVAPKGPGHLV  138 (338)
T ss_pred             EEeCchhhHHHHHHHHhhhhhcCCceEEeccccceecce-e-cC-CccCcEEEEcCCCCcHHH
Confidence            999999999999887776543  3367899999743211 1 10 134457788999988543

>PRK06270 homoserine dehydrogenase; Provisional

Probab=97.58  E-value=0.00035  Score=68.59  Aligned_cols=175  Identities=19%  Similarity=0.184  Sum_probs=101.0

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc----------CCeEEEeeCCCC-----CCce---------ecC-ccccc------C
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY----------GTKMVGGVTPKK-----GGTE---------HLG-LPVFN------T   90 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~----------G~~vv~~VnP~~-----~g~~---------i~G-~p~y~------s   90 (340)
                      .++|+|+|+ |++|+.+++.+.+.          ++++++.+|++.     .|-.         -.| +..|+      +
T Consensus         2 ~i~V~IiG~-G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d   80 (341)
T PRK06270          2 EMKIALIGF-GGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEIS   80 (341)
T ss_pred             eEEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCC
Confidence            478899999 99999998877643          467787777531     1100         011 23343      7


Q ss_pred             HHHhhccCCCcEEEEecChhh-----HHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccC
Q 019500           91 VAEAKAETKANASAIYVPPPF-----AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKP  165 (340)
Q Consensus        91 l~dip~~~~vDlavi~vp~~~-----v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p  165 (340)
                      +.++....++|++++++|+..     +.+.+++|+++|++. |.-+.+.-.....+|.+.+ +++|..+.=.-+.|-..|
T Consensus        81 ~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhV-VtaNK~pla~~~~eL~~~A-~~~g~~~~~ea~v~~glP  158 (341)
T PRK06270         81 GLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHV-VTSNKGPLALAYKELKELA-KKNGVRFRYEATVGGAMP  158 (341)
T ss_pred             HHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEE-EcCCcHHHHhhHHHHHHHH-HHcCCEEEEeeeeeechh
Confidence            888875557999999999754     378899999999876 3222233222345666665 778877652223333333


Q ss_pred             C--CcccccCCCCCCCCCcEEEEe--cChHHHHHHHHHHHhCCCCceEEe----ecCC---CCCCCCCHHHH
Q 019500          166 G--ECKIGIMPGYIHKPGRIGIVS--RSGTLTYEAVFQTTAVGLGQSTCV----GIGG---DPFNGTNFVDC  226 (340)
Q Consensus       166 ~--~~~~~~~~~~~~~~G~valvS--QSG~l~~~~~~~~~~~giG~S~~v----s~Gn---~a~~dv~~~d~  226 (340)
                      .  .+.-      ....+.|.=|.  -||+..+ +++...+.|..|+.++    ..|-   ++-.|++-.|.
T Consensus       159 ii~~l~~------~l~g~~I~~I~GIlnGT~ny-Il~~m~~~g~~f~~al~~Aq~~G~aE~DP~~D~~G~D~  223 (341)
T PRK06270        159 IINLAKE------TLAGNDIKSIKGILNGTTNY-ILTRMEEEGLSYEQALAEAQELGYAEADPTYDVEGIDA  223 (341)
T ss_pred             HHHHHHh------hcccCceEEEEEEEeCcHHH-HHHHHhhcCCCHHHHHHHHHHcCCCCCCCCCCCccHHH
Confidence            3  1111      12234554432  2444433 4455555677777654    3442   22336666665

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=97.57  E-value=0.00022  Score=70.04  Aligned_cols=87  Identities=21%  Similarity=0.215  Sum_probs=66.5

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCC---------Cce-----------e--cCcccccCHHHhhccC
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKG---------GTE-----------H--LGLPVFNTVAEAKAET   98 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~---------g~~-----------i--~G~p~y~sl~dip~~~   98 (340)
                      +++|.|+|+ |++|+.+++.+.+. ++++++.++++..         |-.           .  .+++++.+++++.+  
T Consensus         1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~--   77 (341)
T PRK04207          1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLE--   77 (341)
T ss_pred             CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhc--
Confidence            368889999 99999999988764 7888866654320         000           0  25677788888875  


Q ss_pred             CCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCC
Q 019500           99 KANASAIYVPPPFAAAAILEAMEAELDLVVCITEG  133 (340)
Q Consensus        99 ~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~G  133 (340)
                      ++|++++|+|+....+..+.++++|.+.  |++++
T Consensus        78 ~vDVVIdaT~~~~~~e~a~~~~~aGk~V--I~~~~  110 (341)
T PRK04207         78 KADIVVDATPGGVGAKNKELYEKAGVKA--IFQGG  110 (341)
T ss_pred             cCCEEEECCCchhhHHHHHHHHHCCCEE--EEcCC
Confidence            5999999999999999999999999554  35665

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=97.56  E-value=0.00015  Score=63.83  Aligned_cols=118  Identities=22%  Similarity=0.346  Sum_probs=75.4

Q ss_pred             cCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC---ceecCcccccCHHHhhccCCCcEEEEecChhhHHH
Q 019500           38 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG---TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA  114 (340)
Q Consensus        38 f~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g---~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~  114 (340)
                      |+.+.++|+  |. |+.|+.++.||++.|++++....+....   .+-.|..++ +++|..+  .-|++++.+|.+...+
T Consensus         2 l~~k~IAVi--Gy-GsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~--~aDvV~~L~PD~~q~~   75 (165)
T PF07991_consen    2 LKGKTIAVI--GY-GSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVK--KADVVMLLLPDEVQPE   75 (165)
T ss_dssp             HCTSEEEEE--S--SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHH--C-SEEEE-S-HHHHHH
T ss_pred             cCCCEEEEE--CC-ChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHh--hCCEEEEeCChHHHHH
Confidence            455666555  99 8899999999999999977677665410   135788887 5777766  4899999999999999


Q ss_pred             HHHHHHHcC--CcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCccc
Q 019500          115 AILEAMEAE--LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK  164 (340)
Q Consensus       115 ~v~ea~~~G--vk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~  164 (340)
                      +.++-++..  -..+++|+.||+-.- ..+. - .+.-++-++-|..+|-..
T Consensus        76 vy~~~I~p~l~~G~~L~fahGfni~~-~~i~-p-p~~vdV~mvAPKgpG~~v  124 (165)
T PF07991_consen   76 VYEEEIAPNLKPGATLVFAHGFNIHY-GLIK-P-PKDVDVIMVAPKGPGHLV  124 (165)
T ss_dssp             HHHHHHHHHS-TT-EEEESSSHHHHC-TTS-----TTSEEEEEEESSSCHHH
T ss_pred             HHHHHHHhhCCCCCEEEeCCcchhhc-Cccc-C-CCCCeEEEEecCCCChHH
Confidence            987776654  345788999996321 0111 0 123456677888777543

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.51  E-value=0.00029  Score=59.79  Aligned_cols=95  Identities=17%  Similarity=0.086  Sum_probs=59.6

Q ss_pred             CcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc-----eecCcccccCHHHhhccCCCcEEEEecChhhHH
Q 019500           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-----EHLGLPVFNTVAEAKAETKANASAIYVPPPFAA  113 (340)
Q Consensus        39 ~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~-----~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~  113 (340)
                      ++...+|.|+|+ ||.|+.+.+.|.+.|+.+....+++....     .+.+.+ +.++.|+..  +.|+++|++|.+...
T Consensus         7 ~~~~l~I~iIGa-GrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~-~~~~~~~~~--~aDlv~iavpDdaI~   82 (127)
T PF10727_consen    7 QAARLKIGIIGA-GRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGA-ILDLEEILR--DADLVFIAVPDDAIA   82 (127)
T ss_dssp             -----EEEEECT-SCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT------TTGGGC--C-SEEEE-S-CCHHH
T ss_pred             CCCccEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccccc-ccccccccc--cCCEEEEEechHHHH
Confidence            345678889999 99999999999999999775555543111     133444 445777766  589999999999999


Q ss_pred             HHHHHHHHcC---CcEEEEecCCCChh
Q 019500          114 AAILEAMEAE---LDLVVCITEGIPQH  137 (340)
Q Consensus       114 ~~v~ea~~~G---vk~vvi~t~Gf~e~  137 (340)
                      ++.++....|   -..+|+-|+|--..
T Consensus        83 ~va~~La~~~~~~~g~iVvHtSGa~~~  109 (127)
T PF10727_consen   83 EVAEQLAQYGAWRPGQIVVHTSGALGS  109 (127)
T ss_dssp             HHHHHHHCC--S-TT-EEEES-SS--G
T ss_pred             HHHHHHHHhccCCCCcEEEECCCCChH
Confidence            9999998772   34578889986443

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.49  E-value=0.00068  Score=65.13  Aligned_cols=114  Identities=18%  Similarity=0.202  Sum_probs=74.6

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccC-CCcEEEEecChh-hHHHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAET-KANASAIYVPPP-FAAAAILE  118 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~-~vDlavi~vp~~-~v~~~v~e  118 (340)
                      +|.++|. |.||..++++|.+.|++++ ..|+.... +.  -.|..++.+++|+.+.. ++|++++++|+. .+.++++.
T Consensus         2 ~Ig~IGl-G~MG~~mA~~L~~~g~~v~-v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~   79 (301)
T PRK09599          2 QLGMIGL-GRMGGNMARRLLRGGHEVV-GYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDE   79 (301)
T ss_pred             EEEEEcc-cHHHHHHHHHHHHCCCeEE-EEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHH
Confidence            4677799 9999999999999999854 56664310 11  24778888999887631 369999999987 66777666


Q ss_pred             HHHc-CC-cEEEEecCCCChhhHHHHHHHHhccCCcEEE-ccCCCC
Q 019500          119 AMEA-EL-DLVVCITEGIPQHDMVRVKAALNNQSKTRLV-GPNCPG  161 (340)
Q Consensus       119 a~~~-Gv-k~vvi~t~Gf~e~~~~~l~~~aar~~girvi-GPNc~G  161 (340)
                      +... .- +.+|..+++. .....++.+.+ ++.|++++ .|.+-|
T Consensus        80 l~~~l~~g~ivid~st~~-~~~~~~~~~~~-~~~g~~~~dapvsG~  123 (301)
T PRK09599         80 LAPLLSPGDIVIDGGNSY-YKDDIRRAELL-AEKGIHFVDVGTSGG  123 (301)
T ss_pred             HHhhCCCCCEEEeCCCCC-hhHHHHHHHHH-HHcCCEEEeCCCCcC
Confidence            5543 11 2334344443 34445555555 67788866 454444

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.49  E-value=0.0006  Score=65.51  Aligned_cols=110  Identities=18%  Similarity=0.197  Sum_probs=74.4

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccC-CCcEEEEecChh-hHHHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAET-KANASAIYVPPP-FAAAAILE  118 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~-~vDlavi~vp~~-~v~~~v~e  118 (340)
                      +|.++|. |+||..++++|.+.|++++ ..|++... +.  -.|..++.+.+++.++. ..|++++++|++ .+.+++++
T Consensus         2 ~Ig~IGl-G~mG~~mA~~L~~~g~~v~-v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~   79 (299)
T PRK12490          2 KLGLIGL-GKMGGNMAERLREDGHEVV-GYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKD   79 (299)
T ss_pred             EEEEEcc-cHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHH
Confidence            4667798 9999999999999999855 45654310 11  24778889999987531 269999999998 77777776


Q ss_pred             HHHcC-CcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          119 AMEAE-LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       119 a~~~G-vk~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                      ....- -+.+||-++.....+..++.+.+ +++|++++-
T Consensus        80 i~~~l~~g~ivid~st~~~~~~~~~~~~~-~~~g~~~vd  117 (299)
T PRK12490         80 LYPLLSPGDIVVDGGNSRYKDDLRRAEEL-AERGIHYVD  117 (299)
T ss_pred             HhccCCCCCEEEECCCCCchhHHHHHHHH-HHcCCeEEe
Confidence            55432 23345555555555555565555 567777663

>PRK06349 homoserine dehydrogenase; Provisional

Probab=97.48  E-value=0.00053  Score=69.32  Aligned_cols=111  Identities=16%  Similarity=0.097  Sum_probs=76.5

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHH--------c--CCeEEEeeCCCCC---CceecCcccccCHHHhhccCCCcEEEEecC
Q 019500           42 NTRVICQGITGKNGTFHTEQAIE--------Y--GTKMVGGVTPKKG---GTEHLGLPVFNTVAEAKAETKANASAIYVP  108 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~--------~--G~~vv~~VnP~~~---g~~i~G~p~y~sl~dip~~~~vDlavi~vp  108 (340)
                      .++|.|+|+ |.+|+.+++.+.+        .  ++++++.++++..   +....+...|.+++++....++|+++++++
T Consensus         3 ~i~VgiiG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg   81 (426)
T PRK06349          3 PLKVGLLGL-GTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMG   81 (426)
T ss_pred             eEEEEEEee-CHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCC
Confidence            578999999 9999988776543        2  3467766665431   112345668889999986557999999986


Q ss_pred             h-hhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEE
Q 019500          109 P-PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (340)
Q Consensus       109 ~-~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi  155 (340)
                      + +.+.+.+++|+++|.+.+. -......+...+|.+++ +++|+.+.
T Consensus        82 ~~~~~~~~~~~aL~~GkhVVt-aNK~~~a~~~~eL~~lA-~~~gv~l~  127 (426)
T PRK06349         82 GIEPARELILKALEAGKHVVT-ANKALLAVHGAELFAAA-EEKGVDLY  127 (426)
T ss_pred             CchHHHHHHHHHHHCCCeEEE-cCHHHHHHHHHHHHHHH-HHcCCcEE
Confidence            5 6678999999999987632 11222233456777766 78887755

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=97.47  E-value=0.00099  Score=64.44  Aligned_cols=92  Identities=15%  Similarity=0.093  Sum_probs=70.1

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeC--CCCCC---ceecCccc-ccCHHHhhcc---CCCcEEEEecChh
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVT--PKKGG---TEHLGLPV-FNTVAEAKAE---TKANASAIYVPPP  110 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~Vn--P~~~g---~~i~G~p~-y~sl~dip~~---~~vDlavi~vp~~  110 (340)
                      +.++|.|+|. |++|+.++..+.+. ++++++.++  |...+   ..-.|++. |.+++++.+.   .++|++++++|+.
T Consensus         3 ~klrVAIIGt-G~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~   81 (302)
T PRK08300          3 SKLKVAIIGS-GNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG   81 (302)
T ss_pred             CCCeEEEEcC-cHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH
Confidence            4578889994 99999988777764 677776654  43222   12368886 5889999864   4799999999999


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCC
Q 019500          111 FAAAAILEAMEAELDLVVCITEGI  134 (340)
Q Consensus       111 ~v~~~v~ea~~~Gvk~vvi~t~Gf  134 (340)
                      .+.+....+.++|++. +..++-+
T Consensus        82 ~H~e~a~~a~eaGk~V-ID~sPA~  104 (302)
T PRK08300         82 AHVRHAAKLREAGIRA-IDLTPAA  104 (302)
T ss_pred             HHHHHHHHHHHcCCeE-EECCccc
Confidence            9999999999999876 5566543

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.46  E-value=0.0012  Score=61.20  Aligned_cols=108  Identities=14%  Similarity=0.184  Sum_probs=78.1

Q ss_pred             EEEEeCCCCCcchHHHHHHHHc--CCeEEEeeCCCCCC-c---eecCcccccCHHHhhccCCCcEEEEecChhhHHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAIL  117 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~--G~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~  117 (340)
                      +|.++|+ |.+|+.+.+.+.+.  .++.++.-+..... .   .-.+.++..+|+|+.+  .+|++|=|-.++++.+.+.
T Consensus         2 ~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~--~~DlvVEaAS~~Av~e~~~   78 (255)
T COG1712           2 KVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIA--EVDLVVEAASPEAVREYVP   78 (255)
T ss_pred             eEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhh--ccceeeeeCCHHHHHHHhH
Confidence            5677899 99999999988764  57766554443310 1   1245555588999975  5999999999999999999


Q ss_pred             HHHHcCCcEEEEecCCCChhhHHH-HHHHHhccCCcEEE
Q 019500          118 EAMEAELDLVVCITEGIPQHDMVR-VKAALNNQSKTRLV  155 (340)
Q Consensus       118 ea~~~Gvk~vvi~t~Gf~e~~~~~-l~~~aar~~girvi  155 (340)
                      ++++.|+..+|+-..-+++++..+ +.+.+ +..|-++-
T Consensus        79 ~~L~~g~d~iV~SVGALad~~l~erl~~la-k~~~~rv~  116 (255)
T COG1712          79 KILKAGIDVIVMSVGALADEGLRERLRELA-KCGGARVY  116 (255)
T ss_pred             HHHhcCCCEEEEechhccChHHHHHHHHHH-hcCCcEEE
Confidence            999999999764444478777544 44444 66666644

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.45  E-value=0.001  Score=63.88  Aligned_cols=113  Identities=15%  Similarity=0.147  Sum_probs=72.6

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhcc-CCCcEEEEecChhhHHHHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAE-TKANASAIYVPPPFAAAAILEA  119 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~-~~vDlavi~vp~~~v~~~v~ea  119 (340)
                      +|.++|. |+||..++++|.+.|++++ ..|++... +.  -.|...+.+++++.+. ..+|++++++|+..+.+++++.
T Consensus         2 ~Ig~IGl-G~mG~~la~~L~~~g~~V~-~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l   79 (298)
T TIGR00872         2 QLGLIGL-GRMGANIVRRLAKRGHDCV-GYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEEL   79 (298)
T ss_pred             EEEEEcc-hHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHH
Confidence            4667798 9999999999999999855 45554310 11  1356667788776542 2479999999999888888776


Q ss_pred             HHcC-C-cEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCC
Q 019500          120 MEAE-L-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCP  160 (340)
Q Consensus       120 ~~~G-v-k~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~  160 (340)
                      ...- - +.+|..+++.+ .+..++.+.+ ++.|++++.-.-.
T Consensus        80 ~~~l~~g~ivid~st~~~-~~t~~~~~~~-~~~g~~~vda~vs  120 (298)
T TIGR00872        80 APTLEKGDIVIDGGNSYY-KDSLRRYKLL-KEKGIHLLDCGTS  120 (298)
T ss_pred             HhhCCCCCEEEECCCCCc-ccHHHHHHHH-HhcCCeEEecCCC
Confidence            6432 1 33343334443 3434444444 5678887764433

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.41  E-value=0.0014  Score=62.17  Aligned_cols=109  Identities=12%  Similarity=0.127  Sum_probs=78.6

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc---CCeEEEeeCCCCCC-ce-ecCcccccCHHHhhccCCCcEEEEecChhhHHHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGG-TE-HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAIL  117 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~---G~~vv~~VnP~~~g-~~-i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~  117 (340)
                      .+|.|+|+ |.+|+.+++.+.+.   ++++++...+.... +. ....+++.+++++... .+|++|-|-+++.+.+..+
T Consensus         3 ~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~-~~DlVVE~A~~~av~e~~~   80 (267)
T PRK13301          3 HRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAW-RPDLVVEAAGQQAIAEHAE   80 (267)
T ss_pred             eEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhc-CCCEEEECCCHHHHHHHHH
Confidence            46788899 99999999988753   36766443332200 11 2337889999997432 6999999999999999999


Q ss_pred             HHHHcCCcEEEEecCC-CChhhH-HHHHHHHhccCCcEEE
Q 019500          118 EAMEAELDLVVCITEG-IPQHDM-VRVKAALNNQSKTRLV  155 (340)
Q Consensus       118 ea~~~Gvk~vvi~t~G-f~e~~~-~~l~~~aar~~girvi  155 (340)
                      .++++|+..++ +|.| |.+.+. +++.+.+ +++|-++.
T Consensus        81 ~iL~~g~dlvv-~SvGALaD~~~~~~l~~~A-~~~g~~i~  118 (267)
T PRK13301         81 GCLTAGLDMII-CSAGALADDALRARLIAAA-EAGGARIR  118 (267)
T ss_pred             HHHhcCCCEEE-EChhHhcCHHHHHHHHHHH-HhCCCEEE
Confidence            99999999855 6765 776654 4555555 66665654

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=97.41  E-value=0.00065  Score=65.23  Aligned_cols=89  Identities=19%  Similarity=0.121  Sum_probs=67.1

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeC--CCCCC---ceecCccc-ccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVT--PKKGG---TEHLGLPV-FNTVAEAKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~Vn--P~~~g---~~i~G~p~-y~sl~dip~~~~vDlavi~vp~~~v~~~  115 (340)
                      ++|.|+|+ |++|+.++..+.+. ++++++.++  |...+   .+-.|++. |.+++++.+..++|++++++|+..+.+.
T Consensus         2 lrVAIIG~-G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~   80 (285)
T TIGR03215         2 VKVAIIGS-GNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARH   80 (285)
T ss_pred             cEEEEEeC-cHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHH
Confidence            57788898 99999987776654 677666554  44322   12368875 5689998765579999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCC
Q 019500          116 ILEAMEAELDLVVCITEG  133 (340)
Q Consensus       116 v~ea~~~Gvk~vvi~t~G  133 (340)
                      ..++.++|++. +..++-
T Consensus        81 a~~al~aGk~V-IdekPa   97 (285)
T TIGR03215        81 ARLLAELGKIV-IDLTPA   97 (285)
T ss_pred             HHHHHHcCCEE-EECCcc
Confidence            99999999876 445553

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.36  E-value=0.0012  Score=55.00  Aligned_cols=88  Identities=17%  Similarity=0.188  Sum_probs=62.8

Q ss_pred             EEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCC-CCceec-Ccc---------ccc-CHHHhhccCCCcEEEEecChh
Q 019500           44 RVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK-GGTEHL-GLP---------VFN-TVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~-~g~~i~-G~p---------~y~-sl~dip~~~~vDlavi~vp~~  110 (340)
                      ||.|+|++|..|+.+++.|.++ .+++++.+..+. .|+.+. ..|         +-. +.+++.   ++|+++.|+|..
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Dvvf~a~~~~   77 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELS---DVDVVFLALPHG   77 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHT---TESEEEE-SCHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhh---cCCEEEecCchh
Confidence            5778899999999999999986 567776666554 444321 111         111 233442   599999999999


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCC
Q 019500          111 FAAAAILEAMEAELDLVVCITEGIP  135 (340)
Q Consensus       111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~  135 (340)
                      ...+...++++.|++. |=.++.|.
T Consensus        78 ~~~~~~~~~~~~g~~V-iD~s~~~R  101 (121)
T PF01118_consen   78 ASKELAPKLLKAGIKV-IDLSGDFR  101 (121)
T ss_dssp             HHHHHHHHHHHTTSEE-EESSSTTT
T ss_pred             HHHHHHHHHhhCCcEE-EeCCHHHh
Confidence            9999999999999954 66777664

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK07680 late competence protein ComER; Validated

Probab=97.35  E-value=0.0012  Score=62.56  Aligned_cols=107  Identities=19%  Similarity=0.220  Sum_probs=71.9

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCC---eEEEeeCCCCCC-c----eecCcccccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGG-T----EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~---~vv~~VnP~~~g-~----~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~  115 (340)
                      +|.|+|+ |+||..+++.|.+.|+   ..+...|++... +    +..|++++.+..++..  +.|++++++|+..+.++
T Consensus         2 ~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--~aDiVilav~p~~~~~v   78 (273)
T PRK07680          2 NIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVIS--QSDLIFICVKPLDIYPL   78 (273)
T ss_pred             EEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHH--hCCEEEEecCHHHHHHH
Confidence            4667798 9999999999998874   234466765310 1    1226777788888765  48999999999999999


Q ss_pred             HHHHHHc--CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccC
Q 019500          116 ILEAMEA--ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN  158 (340)
Q Consensus       116 v~ea~~~--Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPN  158 (340)
                      +++....  .-+.++-++.|.+   .+++.+.. ..+.+|++ ||
T Consensus        79 l~~l~~~l~~~~~iis~~ag~~---~~~L~~~~-~~~~~r~~-p~  118 (273)
T PRK07680         79 LQKLAPHLTDEHCLVSITSPIS---VEQLETLV-PCQVARII-PS  118 (273)
T ss_pred             HHHHHhhcCCCCEEEEECCCCC---HHHHHHHc-CCCEEEEC-CC
Confidence            9886542  1235566777775   33444433 33445666 55

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.34  E-value=0.0016  Score=56.73  Aligned_cols=112  Identities=18%  Similarity=0.234  Sum_probs=66.9

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEE-EeeCC-------------CCC-Cce-ecCcccccCHHHhhccCCCcEEEEec
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMV-GGVTP-------------KKG-GTE-HLGLPVFNTVAEAKAETKANASAIYV  107 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv-~~VnP-------------~~~-g~~-i~G~p~y~sl~dip~~~~vDlavi~v  107 (340)
                      +|.|+|+ |++|+.++..|.+.|.++. |.-++             ++. +.+ -..+.+..++++..+  +.|++++++
T Consensus         1 KI~ViGa-G~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~--~ad~Iiiav   77 (157)
T PF01210_consen    1 KIAVIGA-GNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALE--DADIIIIAV   77 (157)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHT--T-SEEEE-S
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhC--cccEEEecc
Confidence            4677799 9999999999999997733 32221             110 000 123556778988876  589999999


Q ss_pred             ChhhHHHHHHHHHHc--CCcEEEEecCCCChhh---H-HHHHHHHhccCCcE-EEccCC
Q 019500          108 PPPFAAAAILEAMEA--ELDLVVCITEGIPQHD---M-VRVKAALNNQSKTR-LVGPNC  159 (340)
Q Consensus       108 p~~~v~~~v~ea~~~--Gvk~vvi~t~Gf~e~~---~-~~l~~~aar~~gir-viGPNc  159 (340)
                      |+..+.+++++....  .-..+++.+-||....   . +.+.+.. ....+. +-||+-
T Consensus        78 Ps~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~-~~~~~~~lsGP~~  135 (157)
T PF01210_consen   78 PSQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEIL-PIPRIAVLSGPSF  135 (157)
T ss_dssp             -GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHH-SSCGEEEEESS--
T ss_pred             cHHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHh-hhcceEEeeCccH
Confidence            999999999988763  2344566777993322   2 2233333 333344 557773

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=97.34  E-value=0.00085  Score=64.39  Aligned_cols=92  Identities=20%  Similarity=0.130  Sum_probs=62.6

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee----------------cCcccccCHHHhhccCCCcEEEEe
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH----------------LGLPVFNTVAEAKAETKANASAIY  106 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i----------------~G~p~y~sl~dip~~~~vDlavi~  106 (340)
                      +|.|+|+ |.||..++..|.+.|+++. .++++..- +.+                .+.....++++..+  +.|+++++
T Consensus         3 kI~iiG~-G~mG~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~vi~~   78 (325)
T PRK00094          3 KIAVLGA-GSWGTALAIVLARNGHDVT-LWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA--DADLILVA   78 (325)
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh--CCCEEEEe
Confidence            5778899 9999999999999998843 44443200 000                13445567777765  58999999


Q ss_pred             cChhhHHHHHHHHHHc-CC-cEEEEecCCCChhhH
Q 019500          107 VPPPFAAAAILEAMEA-EL-DLVVCITEGIPQHDM  139 (340)
Q Consensus       107 vp~~~v~~~v~ea~~~-Gv-k~vvi~t~Gf~e~~~  139 (340)
                      +|+..+.+++++.... .- +.++.++.|+..+..
T Consensus        79 v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~  113 (325)
T PRK00094         79 VPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTG  113 (325)
T ss_pred             CCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCC
Confidence            9999888888877653 21 234556668875433

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.31  E-value=0.0018  Score=63.27  Aligned_cols=122  Identities=10%  Similarity=0.065  Sum_probs=89.8

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHH---cCCeEEEeeCCCCCC-c---eecC---cccccCHHHhhccCCCcEEEEecChh
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKKGG-T---EHLG---LPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~---~G~~vv~~VnP~~~g-~---~i~G---~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      ..+++-++|+ +++++...+.+..   .++++++..+|.... .   +-.+   .++|.|.+++.+...+|+++|.+|..
T Consensus         5 ~~ir~Gi~g~-g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~   83 (351)
T KOG2741|consen    5 ATIRWGIVGA-GRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNP   83 (351)
T ss_pred             ceeEEEEeeh-hHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCc
Confidence            4678888899 8888888877654   478899888885411 1   1133   57999999999876799999999999


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccC
Q 019500          111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKP  165 (340)
Q Consensus       111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p  165 (340)
                      .+.+++..++++|-+.++=-....+.+|.+++.++| ++.|+.++ -....-..|
T Consensus        84 qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA-~~rgv~~m-eg~~~R~~P  136 (351)
T KOG2741|consen   84 QHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAA-EARGVFFM-EGLWWRFFP  136 (351)
T ss_pred             cHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHH-HHcCcEEE-eeeeeecCc
Confidence            999999999999988543222356777888888887 77886644 233344444

>PLN02256 arogenate dehydrogenase

Probab=97.30  E-value=0.0018  Score=62.69  Aligned_cols=103  Identities=15%  Similarity=0.200  Sum_probs=72.8

Q ss_pred             hhhhhcccccccCCCCCCCCCCCCcccc-cCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc--eecCcc
Q 019500           10 VRSLYMSSEICCGQSRSFTTAPPPAPAV-FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLP   86 (340)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l-f~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~--~i~G~p   86 (340)
                      -|||-.- -|-..|.-.|+..   |..- -.++..+|.|+|+ |.||..+++.+.+.|++++ .++++....  .-.|+.
T Consensus         7 ~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~kI~IIG~-G~mG~slA~~L~~~G~~V~-~~d~~~~~~~a~~~gv~   80 (304)
T PLN02256          7 PRSLRVR-AIDAAQPFDYESR---LQEELEKSRKLKIGIVGF-GNFGQFLAKTFVKQGHTVL-ATSRSDYSDIAAELGVS   80 (304)
T ss_pred             CCCcccc-cccccCCCChHhH---HhHhhccCCCCEEEEEee-CHHHHHHHHHHHhCCCEEE-EEECccHHHHHHHcCCe
Confidence            3444332 3445566666655   4333 3567778999997 9999999999998898765 666654101  124677


Q ss_pred             cccCHHHhhccCCCcEEEEecChhhHHHHHHHH
Q 019500           87 VFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (340)
Q Consensus        87 ~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea  119 (340)
                      .+.+++++... ++|++++++|+....+++++.
T Consensus        81 ~~~~~~e~~~~-~aDvVilavp~~~~~~vl~~l  112 (304)
T PLN02256         81 FFRDPDDFCEE-HPDVVLLCTSILSTEAVLRSL  112 (304)
T ss_pred             eeCCHHHHhhC-CCCEEEEecCHHHHHHHHHhh
Confidence            78888887532 489999999999999999887

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.29  E-value=0.00098  Score=52.57  Aligned_cols=73  Identities=15%  Similarity=0.188  Sum_probs=52.9

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcC---CeEEEeeCCCCCCc----eecCccccc-CHHHhhccCCCcEEEEecChhhHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYG---TKMVGGVTPKKGGT----EHLGLPVFN-TVAEAKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G---~~vv~~VnP~~~g~----~i~G~p~y~-sl~dip~~~~vDlavi~vp~~~v~~~  115 (340)
                      +|.++|+ |+||+.+.+.|.+.|   .++....+++....    +-.+..++. +..|+.+  ..|++++++||..+.++
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~advvilav~p~~~~~v   77 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQ--EADVVILAVKPQQLPEV   77 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHH--HTSEEEE-S-GGGHHHH
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhc--cCCEEEEEECHHHHHHH
Confidence            4667799 999999999999998   66552335543101    234556666 7888876  48999999999999999


Q ss_pred             HHHH
Q 019500          116 ILEA  119 (340)
Q Consensus       116 v~ea  119 (340)
                      +++.
T Consensus        78 ~~~i   81 (96)
T PF03807_consen   78 LSEI   81 (96)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9998

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=97.28  E-value=0.002  Score=61.37  Aligned_cols=108  Identities=16%  Similarity=0.155  Sum_probs=69.2

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccCCCcEEEEecChhhHHH-HH---
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPPFAAA-AI---  116 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~-~v---  116 (340)
                      +|.|+|. |.+|..+++++.+.|++++ ..|++... +.  -.|.....+++++.+  +.|++++++|...... ++   
T Consensus         4 ~IgviG~-G~mG~~~a~~l~~~g~~v~-~~d~~~~~~~~~~~~g~~~~~~~~e~~~--~~d~vi~~vp~~~~~~~v~~~~   79 (296)
T PRK11559          4 KVGFIGL-GIMGKPMSKNLLKAGYSLV-VYDRNPEAVAEVIAAGAETASTAKAVAE--QCDVIITMLPNSPHVKEVALGE   79 (296)
T ss_pred             eEEEEcc-CHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHCCCeecCCHHHHHh--cCCEEEEeCCCHHHHHHHHcCc
Confidence            5667798 9999999999999999855 56665310 11  246667788988876  5899999999655433 33   


Q ss_pred             HHHHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          117 LEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       117 ~ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                      +..... .-..+++-++..+....+++.+.+ ++.|++++-
T Consensus        80 ~~~~~~~~~g~iiid~st~~~~~~~~l~~~~-~~~g~~~~d  119 (296)
T PRK11559         80 NGIIEGAKPGTVVIDMSSIAPLASREIAAAL-KAKGIEMLD  119 (296)
T ss_pred             chHhhcCCCCcEEEECCCCCHHHHHHHHHHH-HHcCCcEEE
Confidence            222322 223444445555555556666655 455766553

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.28  E-value=0.0011  Score=64.24  Aligned_cols=111  Identities=23%  Similarity=0.205  Sum_probs=70.2

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee----------cC------cccccCHHHhhccCCCcEEE
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH----------LG------LPVFNTVAEAKAETKANASA  104 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i----------~G------~p~y~sl~dip~~~~vDlav  104 (340)
                      .++|.|+|+ |.||..++..|.+.|+++. .+++.... +.+          .|      +....++++..+  +.|+++
T Consensus         4 ~m~I~iIG~-G~mG~~ia~~L~~~G~~V~-~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~--~aD~Vi   79 (328)
T PRK14618          4 GMRVAVLGA-GAWGTALAVLAASKGVPVR-LWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALA--GADFAV   79 (328)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHc--CCCEEE
Confidence            346778899 9999999999999999854 55654210 111          13      334557777654  589999


Q ss_pred             EecChhhHHHHHHHHHHcCCcEEEEecCCCChhh--HHHHHHHHhc--cCCcE-EEccC
Q 019500          105 IYVPPPFAAAAILEAMEAELDLVVCITEGIPQHD--MVRVKAALNN--QSKTR-LVGPN  158 (340)
Q Consensus       105 i~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~--~~~l~~~aar--~~gir-viGPN  158 (340)
                      +++|+..+.++++.+ +.+. .++.++.|+...+  .+++.+.+.+  ..++. +.|||
T Consensus        80 ~~v~~~~~~~v~~~l-~~~~-~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~  136 (328)
T PRK14618         80 VAVPSKALRETLAGL-PRAL-GYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPN  136 (328)
T ss_pred             EECchHHHHHHHHhc-CcCC-EEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECcc
Confidence            999999887777554 3343 4566788876443  3444444311  13443 45666

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.26  E-value=0.0021  Score=62.76  Aligned_cols=112  Identities=20%  Similarity=0.192  Sum_probs=77.4

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCe-EEEee-------------CCCCCCc-e-ecCcccccCHHHhhccCCCcEEEEec
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTK-MVGGV-------------TPKKGGT-E-HLGLPVFNTVAEAKAETKANASAIYV  107 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~-vv~~V-------------nP~~~g~-~-i~G~p~y~sl~dip~~~~vDlavi~v  107 (340)
                      +|.|+|+ |.+|+.+++.+.+.|.+ .+|.-             ||++-.. . -.++....+++++.+  ..|++++.+
T Consensus         3 kI~ViGa-GswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~--~ad~iv~av   79 (329)
T COG0240           3 KIAVIGA-GSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALD--GADIIVIAV   79 (329)
T ss_pred             eEEEEcC-ChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHh--cCCEEEEEC
Confidence            5666699 99999999999999887 55663             4444211 1 134667888999987  589999999


Q ss_pred             ChhhHHHHHHHHH---HcCCcEEEEecCCCChhhHHHHHHHHhccCC---cE-EEccCC
Q 019500          108 PPPFAAAAILEAM---EAELDLVVCITEGIPQHDMVRVKAALNNQSK---TR-LVGPNC  159 (340)
Q Consensus       108 p~~~v~~~v~ea~---~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~g---ir-viGPNc  159 (340)
                      |.....++++...   .++.+. ++.+-||..+..+.+-+.+.+..+   +- +.|||-
T Consensus        80 Ps~~~r~v~~~l~~~l~~~~~i-v~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~  137 (329)
T COG0240          80 PSQALREVLRQLKPLLLKDAII-VSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSF  137 (329)
T ss_pred             ChHHHHHHHHHHhhhccCCCeE-EEEeccccCCCcchHHHHHHHHcCCCeEEEEECccH
Confidence            9999999999864   444544 668889976654444444322222   33 568874

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=97.25  E-value=0.014  Score=60.47  Aligned_cols=210  Identities=13%  Similarity=0.134  Sum_probs=129.8

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCC--CCCceecCcccccCH--HHhhccCCCcEEEEecCh---hh
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPK--KGGTEHLGLPVFNTV--AEAKAETKANASAIYVPP---PF  111 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~--~~g~~i~G~p~y~sl--~dip~~~~vDlavi~vp~---~~  111 (340)
                      +...+++|+|| |..|...++.++.. .|..++.+|+.  ..|.++.|+|+|.++  .++.++..+|.++++.|.   +.
T Consensus       114 ~~~~r~lIiGA-G~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g~~i~Gv~V~g~~~i~~~v~~~~~~~iiiAips~~~~~  192 (588)
T COG1086         114 DNRIRLLIIGA-GSAGDLLLRALRRDPEYTPVAFLDDDPDLTGMKIRGVPVLGRIEIERVVEELGIQLILIAIPSASQEE  192 (588)
T ss_pred             cCCCceEEEcC-chHHHHHHHHHHhCCCcceEEEECCChhhcCCEEeceeeechhHHHHHHHHcCCceEEEecCCCCHHH
Confidence            45677889999 88999999988875 58888888864  346789999999864  444556778999999886   55


Q ss_pred             HHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccCCCCcccCCCcccccCCCCCCCCCcEEEEecC-
Q 019500          112 AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRS-  189 (340)
Q Consensus       112 v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPNc~Gi~~p~~~~~~~~~~~~~~~G~valvSQS-  189 (340)
                      ..+.++.|.+.|++.-++  +.+.+  ..+..... |+-.+. ++|=.      |-..+..-.  ...-.|+.-+|+-. 
T Consensus       193 ~~~i~~~l~~~~~~v~~l--P~~~~--l~~~~~~l-reI~ieDLLgR~------pV~~d~~~i--~~~~~gK~vLVTGag  259 (588)
T COG1086         193 RRRILLRLARTGIAVRIL--PQLTD--LKDLNGQL-REIEIEDLLGRP------PVALDTELI--GAMLTGKTVLVTGGG  259 (588)
T ss_pred             HHHHHHHHHhcCCcEEec--CcHHH--HHHhcccc-ccCCHHHHhCCC------CCCCCHHHH--HhHcCCCEEEEeCCC
Confidence            667899999999766442  22211  00000000 111110 11100      000111000  01334777777765 


Q ss_pred             hHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEE
Q 019500          190 GTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAF  269 (340)
Q Consensus       190 G~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvvl  269 (340)
                      |+++.++..+..+.  +....+=.+.+   ....-++-..|.+.-....+..|+-+    ++|.++..++.+..||=+++
T Consensus       260 GSiGsel~~qil~~--~p~~i~l~~~~---E~~~~~i~~el~~~~~~~~~~~~igd----VrD~~~~~~~~~~~kvd~Vf  330 (588)
T COG1086         260 GSIGSELCRQILKF--NPKEIILFSRD---EYKLYLIDMELREKFPELKLRFYIGD----VRDRDRVERAMEGHKVDIVF  330 (588)
T ss_pred             CcHHHHHHHHHHhc--CCCEEEEecCc---hHHHHHHHHHHHhhCCCcceEEEecc----cccHHHHHHHHhcCCCceEE
Confidence            47889998887765  66777766665   23444555555553224445556555    77888888888878898888


Q ss_pred             EeC
Q 019500          270 IAG  272 (340)
Q Consensus       270 k~G  272 (340)
                      .+-
T Consensus       331 HAA  333 (588)
T COG1086         331 HAA  333 (588)
T ss_pred             Ehh
Confidence            744

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.25  E-value=0.0017  Score=60.98  Aligned_cols=93  Identities=18%  Similarity=0.203  Sum_probs=67.2

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcC---CeEEEeeCCCCCC-c---eecCcccccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYG---TKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G---~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~  115 (340)
                      .+|.|+|+ |++|..+++.+.+.|   ++ +..++++... +   +..|+.+..+..++.+  +.|++++++|+..+.++
T Consensus         3 m~I~iIG~-G~mG~~la~~l~~~g~~~~~-v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~--~advVil~v~~~~~~~v   78 (267)
T PRK11880          3 KKIGFIGG-GNMASAIIGGLLASGVPAKD-IIVSDPSPEKRAALAEEYGVRAATDNQEAAQ--EADVVVLAVKPQVMEEV   78 (267)
T ss_pred             CEEEEEec-hHHHHHHHHHHHhCCCCcce-EEEEcCCHHHHHHHHHhcCCeecCChHHHHh--cCCEEEEEcCHHHHHHH
Confidence            35777799 999999999998877   44 4467765410 1   1136777778887765  58999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCCCChhhH
Q 019500          116 ILEAMEAELDLVVCITEGIPQHDM  139 (340)
Q Consensus       116 v~ea~~~Gvk~vvi~t~Gf~e~~~  139 (340)
                      ++++....-+.++-++.|.+.+..
T Consensus        79 ~~~l~~~~~~~vvs~~~gi~~~~l  102 (267)
T PRK11880         79 LSELKGQLDKLVVSIAAGVTLARL  102 (267)
T ss_pred             HHHHHhhcCCEEEEecCCCCHHHH
Confidence            998876432456667788865443

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.25  E-value=0.0031  Score=59.87  Aligned_cols=95  Identities=15%  Similarity=0.172  Sum_probs=66.8

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcC----CeEEEeeCCCCCC--ce---ecCcccccCHHHhhccCCCcEEEEecChhhHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYG----TKMVGGVTPKKGG--TE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAA  113 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G----~~vv~~VnP~~~g--~~---i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~  113 (340)
                      .+|.++|+ |+||..+++.|.+.|    ++++ ..|+....  +.   -.|+....+..++.+  +.|++++++||+...
T Consensus         4 mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~-v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~--~aDvVilav~p~~~~   79 (279)
T PRK07679          4 QNISFLGA-GSIAEAIIGGLLHANVVKGEQIT-VSNRSNETRLQELHQKYGVKGTHNKKELLT--DANILFLAMKPKDVA   79 (279)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcceEE-EECCCCHHHHHHHHHhcCceEeCCHHHHHh--cCCEEEEEeCHHHHH
Confidence            46778898 999999999999887    4443 56654310  11   136777778888765  489999999999999


Q ss_pred             HHHHHHHHc-C-CcEEEEecCCCChhhHHH
Q 019500          114 AAILEAMEA-E-LDLVVCITEGIPQHDMVR  141 (340)
Q Consensus       114 ~~v~ea~~~-G-vk~vvi~t~Gf~e~~~~~  141 (340)
                      +++++.... . -+.+|-+.+|++.+..++
T Consensus        80 ~vl~~l~~~~~~~~liIs~~aGi~~~~l~~  109 (279)
T PRK07679         80 EALIPFKEYIHNNQLIISLLAGVSTHSIRN  109 (279)
T ss_pred             HHHHHHHhhcCCCCEEEEECCCCCHHHHHH
Confidence            999877643 1 134454568997655443

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=97.20  E-value=0.0018  Score=61.85  Aligned_cols=104  Identities=12%  Similarity=0.089  Sum_probs=72.5

Q ss_pred             eCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccCCCcEEEEecCh-hhHHHHH---HHHH
Q 019500           48 QGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPP-PFAAAAI---LEAM  120 (340)
Q Consensus        48 vGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~~vDlavi~vp~-~~v~~~v---~ea~  120 (340)
                      +|. |.||..++++|.+.|+++. ..|++... +.  -.|.....+..++.+  +.|++++++|+ ..+.+++   +...
T Consensus         2 IGl-G~mG~~mA~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~s~~~~~~--~advVil~vp~~~~~~~v~~g~~~l~   77 (288)
T TIGR01692         2 IGL-GNMGGPMAANLLKAGHPVR-VFDLFPDAVEEAVAAGAQAAASPAEAAE--GADRVITMLPAGQHVISVYSGDEGIL   77 (288)
T ss_pred             Ccc-cHhHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEeCCChHHHHHHHcCcchHh
Confidence            588 9999999999999999854 55665410 11  246667788888876  58999999998 4456665   3444


Q ss_pred             Hc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          121 EA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       121 ~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                      +. .-..+++-+++++.+..+++.+.+ ++.|++++.
T Consensus        78 ~~~~~g~~vid~st~~p~~~~~~~~~~-~~~g~~~vd  113 (288)
T TIGR01692        78 PKVAKGSLLIDCSTIDPDSARKLAELA-AAHGAVFMD  113 (288)
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHH-HHcCCcEEE
Confidence            33 223456667788777777777766 567888775

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.19  E-value=0.0037  Score=58.93  Aligned_cols=93  Identities=19%  Similarity=0.211  Sum_probs=67.8

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCC---eEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~---~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea  119 (340)
                      ++|.++|+ |+||..+.+.|.+.+.   +-++..+|+.  +. .+.....+..++.+  +.|++++++||..+.+++++.
T Consensus         4 mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~--~~-~~~~~~~~~~~~~~--~~D~Vilavkp~~~~~vl~~i   77 (260)
T PTZ00431          4 IRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSK--KN-TPFVYLQSNEELAK--TCDIIVLAVKPDLAGKVLLEI   77 (260)
T ss_pred             CEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCCh--hc-CCeEEeCChHHHHH--hCCEEEEEeCHHHHHHHHHHH
Confidence            46778898 9999999999988762   2355788765  22 24444556666655  489999999999999999987


Q ss_pred             HHc-CCcEEEEecCCCChhhHHH
Q 019500          120 MEA-ELDLVVCITEGIPQHDMVR  141 (340)
Q Consensus       120 ~~~-Gvk~vvi~t~Gf~e~~~~~  141 (340)
                      ... .-+.+|....|++.+..++
T Consensus        78 ~~~l~~~~iIS~~aGi~~~~l~~  100 (260)
T PTZ00431         78 KPYLGSKLLISICGGLNLKTLEE  100 (260)
T ss_pred             HhhccCCEEEEEeCCccHHHHHH
Confidence            642 2356777889998555543

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.17  E-value=0.0025  Score=60.71  Aligned_cols=108  Identities=15%  Similarity=0.094  Sum_probs=69.2

Q ss_pred             EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccCCCcEEEEecChhhHHH-HH---H
Q 019500           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPPFAAA-AI---L  117 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~-~v---~  117 (340)
                      |.|+|. |+||..+++++.+.|++++ .+|++... +.  -.|.....+..++.+  +.|++++++|.....+ ++   +
T Consensus         2 IgvIG~-G~mG~~iA~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~v~~~~~   77 (291)
T TIGR01505         2 VGFIGL-GIMGSPMSINLAKAGYQLH-VTTIGPEVADELLAAGAVTAETARQVTE--QADVIFTMVPDSPQVEEVAFGEN   77 (291)
T ss_pred             EEEEEe-cHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHCCCcccCCHHHHHh--cCCEEEEecCCHHHHHHHHcCcc
Confidence            556698 9999999999999999855 56665410 11  235556678888776  5899999999864433 33   2


Q ss_pred             HHHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEcc
Q 019500          118 EAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGP  157 (340)
Q Consensus       118 ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGP  157 (340)
                      .+... .-..+++-++..+..+.+++.+.+ ++.|+.++.+
T Consensus        78 ~~~~~~~~g~iivd~st~~~~~~~~l~~~l-~~~g~~~~~~  117 (291)
T TIGR01505        78 GIIEGAKPGKTLVDMSSISPIESKRFAKAV-KEKGIDYLDA  117 (291)
T ss_pred             hHhhcCCCCCEEEECCCCCHHHHHHHHHHH-HHcCCCEEec
Confidence            23332 122344444555555556676665 5667887764

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional

Probab=97.16  E-value=0.0084  Score=59.78  Aligned_cols=123  Identities=18%  Similarity=0.277  Sum_probs=86.8

Q ss_pred             CCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccC-CCcHHHHHHHHH
Q 019500          180 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIG-GTAEEDAAALIK  258 (340)
Q Consensus       180 ~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~-g~~~~~~~~f~~  258 (340)
                      .|+|++|+.+|+++...+|.+...|+.....+-+|..+ ..-.+.+.|+.+.+||++++|++.+=+. .....-++.+.+
T Consensus       256 ~~~i~ii~ng~G~~~~~~D~l~~~g~~~~NPvDl~g~~-~~e~~~~aL~~l~~d~~vd~vlv~~~~~~~~~~~va~~i~~  334 (388)
T PRK00696        256 DGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGA-TAERVAEAFKIILSDPNVKAILVNIFGGITRCDVIAEGIIA  334 (388)
T ss_pred             CCcEEEEECCchHHHHHHHHHHHcCCCcCCeEEecCCC-CHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            58999999999999999999999998666677665543 3456788999999999999999764321 111122233333


Q ss_pred             HhC---CCCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcC--CeecCCHHHHHHHHHHH
Q 019500          259 ESG---TEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAG--VTVVESPAKIGAAMLEV  332 (340)
Q Consensus       259 a~r---~~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaG--vv~v~~~~el~~~~~~~  332 (340)
                      +.+   .+|||++.-.| .                            ..+.....|+++|  +...+++++-..++.++
T Consensus       335 ~~~~~~~~kPvv~~~~g-~----------------------------~~~~~~~~L~~~Gi~ip~f~~pe~A~~al~~~  384 (388)
T PRK00696        335 AVKEVGVTVPLVVRLEG-T----------------------------NVELGKKILAESGLNIIAADTLDDAAQKAVEA  384 (388)
T ss_pred             HHHhcCCCCcEEEEeCC-C----------------------------CHHHHHHHHHHCCCCceecCCHHHHHHHHHHH
Confidence            333   47999665433 1                            2234467789999  88999999987776643

>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit

Probab=97.15  E-value=0.0066  Score=60.49  Aligned_cols=123  Identities=16%  Similarity=0.240  Sum_probs=87.7

Q ss_pred             CCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccC-CCcHHHHHHHH
Q 019500          179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIG-GTAEEDAAALI  257 (340)
Q Consensus       179 ~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~-g~~~~~~~~f~  257 (340)
                      ..|+|++++-.|+++...+|.+...|.-...++-+|..+ ..-.+.+.|+-+.+||++++|++++-+. .....-++.+.
T Consensus       255 l~G~i~~i~nG~Gl~~~t~D~~~~~g~~~aNplDlgg~a-~~~~~~~al~~l~~dp~vd~ilv~i~gg~~~~~~va~~i~  333 (386)
T TIGR01016       255 LDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGA-SAERVREALKLVLSDKSVKVVFINIFGGITRCDLVAKGLV  333 (386)
T ss_pred             cCCcEEEEECCccHHHHHHHHHHHcCCCCCCcEEecCCC-CHHHHHHHHHHHHcCCCCCEEEEECCCCCCCHHHHHHHHH
Confidence            579999999999999999999999898887888777654 2456788999999999999999875521 11112223333


Q ss_pred             HHhC-C--CCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcC--CeecCCHHHHHHHHHH
Q 019500          258 KESG-T--EKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAG--VTVVESPAKIGAAMLE  331 (340)
Q Consensus       258 ~a~r-~--~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaG--vv~v~~~~el~~~~~~  331 (340)
                      ++.+ .  +|||++.-.|.                             ..+.....|+++|  +...+++++-...+-+
T Consensus       334 ~a~~~~~~~kPvvv~~~g~-----------------------------~~~~~~~~L~~~G~~ip~~~~~~~Av~~~~~  383 (386)
T TIGR01016       334 EALKEVGVNVPVVVRLEGT-----------------------------NVEEGKKILAESGLNIIFATSMEEAAEKAVE  383 (386)
T ss_pred             HHHHhcCCCCcEEEEeCCc-----------------------------cHHHHHHHHHHcCCCccccCCHHHHHHHHHH
Confidence            3333 3  39996654331                             2234467788999  9999999886665543

This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=97.11  E-value=0.00039  Score=57.28  Aligned_cols=104  Identities=15%  Similarity=0.142  Sum_probs=70.4

Q ss_pred             CCCCCcchHHHHHHHHc----CCeEEEeeCCC--CCC---ceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHH
Q 019500           49 GITGKNGTFHTEQAIEY----GTKMVGGVTPK--KGG---TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (340)
Q Consensus        49 Gasgk~G~~v~~~l~~~----G~~vv~~VnP~--~~g---~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea  119 (340)
                      |+ |++|+.+++.+.+.    ++++++..|.+  ...   ....+...+.+++++.+..++|++|.+++++.+.+.++++
T Consensus         1 G~-G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~   79 (117)
T PF03447_consen    1 GF-GNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAEYYEKA   79 (117)
T ss_dssp             ---SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHHHHH
T ss_pred             CC-CHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHHHHHHH
Confidence            44 78899999888764    67788777766  100   1134556778999998744699999999999999999999


Q ss_pred             HHcCCcEEEEecCC-CC-hhhHHHHHHHHhccCCcEEE
Q 019500          120 MEAELDLVVCITEG-IP-QHDMVRVKAALNNQSKTRLV  155 (340)
Q Consensus       120 ~~~Gvk~vvi~t~G-f~-e~~~~~l~~~aar~~girvi  155 (340)
                      +++|++.+. .+-+ ++ .....+|.+++ +++|.++.
T Consensus        80 L~~G~~VVt-~nk~ala~~~~~~~L~~~A-~~~g~~~~  115 (117)
T PF03447_consen   80 LERGKHVVT-ANKGALADEALYEELREAA-RKNGVRIY  115 (117)
T ss_dssp             HHTTCEEEE-S-HHHHHSHHHHHHHHHHH-HHHT-EEE
T ss_pred             HHCCCeEEE-ECHHHhhhHHHHHHHHHHH-HHcCCEEE
Confidence            999998743 3333 33 12355666665 78887764

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=97.08  E-value=0.0024  Score=61.28  Aligned_cols=107  Identities=17%  Similarity=0.187  Sum_probs=71.5

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeE-EEeeCCCCCCcee--cCcccccCHHHhhccCCCcEEEEecChhh-HHHHHHH-
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKM-VGGVTPKKGGTEH--LGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAILE-  118 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~v-v~~VnP~~~g~~i--~G~p~y~sl~dip~~~~vDlavi~vp~~~-v~~~v~e-  118 (340)
                      +|.++|. |+||..+.++|.+.|+++ ++-.+|+.  +..  .|.....+..++.+  ..|++++++|.+. +.+++.. 
T Consensus         2 ~Ig~IGl-G~MG~~ma~~L~~~G~~v~v~~~~~~~--~~~~~~g~~~~~s~~~~~~--~advVi~~v~~~~~v~~v~~~~   76 (292)
T PRK15059          2 KLGFIGL-GIMGTPMAINLARAGHQLHVTTIGPVA--DELLSLGAVSVETARQVTE--ASDIIFIMVPDTPQVEEVLFGE   76 (292)
T ss_pred             eEEEEcc-CHHHHHHHHHHHHCCCeEEEEeCCHhH--HHHHHcCCeecCCHHHHHh--cCCEEEEeCCChHHHHHHHcCC
Confidence            4667798 999999999999999984 44445543  222  46777788888876  5899999999873 3444321 


Q ss_pred             --HHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          119 --AMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       119 --a~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                        +... .-..+|+-++..+....+++.+.+ ++.|++++.
T Consensus        77 ~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~-~~~G~~~vd  116 (292)
T PRK15059         77 NGCTKASLKGKTIVDMSSISPIETKRFARQV-NELGGDYLD  116 (292)
T ss_pred             cchhccCCCCCEEEECCCCCHHHHHHHHHHH-HHcCCCEEE
Confidence              1221 112355566666667677777766 567777664

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=97.07  E-value=0.0023  Score=62.48  Aligned_cols=119  Identities=21%  Similarity=0.328  Sum_probs=78.0

Q ss_pred             cccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc--eecCcccccCHHHhhccCCCcEEEEecChhhHH
Q 019500           36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPPFAA  113 (340)
Q Consensus        36 ~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~--~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~  113 (340)
                      ..|..+.+.  |+|. |++|+.++++|+++|++++...+|....+  ...|..++ +++|+..  ..|++++.+|.+...
T Consensus        12 ~~LkgKtVG--IIG~-GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak--~ADVV~llLPd~~t~   85 (335)
T PRK13403         12 ELLQGKTVA--VIGY-GSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVR--TAQVVQMLLPDEQQA   85 (335)
T ss_pred             hhhCcCEEE--EEeE-cHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHh--cCCEEEEeCCChHHH
Confidence            344455554  5599 99999999999999999764434422101  13466654 8999887  589999999987777


Q ss_pred             HHHHHHHHc--CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcc
Q 019500          114 AAILEAMEA--ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVI  163 (340)
Q Consensus       114 ~~v~ea~~~--Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~  163 (340)
                      +++.+-+..  .-..+++|+.||+-.-. .+. - -+.-++-++-|-++|-.
T Consensus        86 ~V~~~eil~~MK~GaiL~f~hgfni~~~-~i~-p-p~~vdv~mvaPKgpG~~  134 (335)
T PRK13403         86 HVYKAEVEENLREGQMLLFSHGFNIHFG-QIN-P-PSYVDVAMVAPKSPGHL  134 (335)
T ss_pred             HHHHHHHHhcCCCCCEEEECCCcceecC-cee-C-CCCCeEEEECCCCCChH
Confidence            777543333  33467889999964211 111 0 13345667788888754

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.06  E-value=0.0058  Score=58.16  Aligned_cols=94  Identities=18%  Similarity=0.239  Sum_probs=65.3

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcC----CeEEEeeCCCCCC--ce----ecCcccccCHHHhhccCCCcEEEEecChhhHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYG----TKMVGGVTPKKGG--TE----HLGLPVFNTVAEAKAETKANASAIYVPPPFAA  113 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G----~~vv~~VnP~~~g--~~----i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~  113 (340)
                      +|.++|+ |+||..+++.|.+.|    .+++ .++++...  ..    ..+..+..+..++.+  +.|++++++|+..+.
T Consensus         3 ~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~-~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~--~aDvVilavpp~~~~   78 (277)
T PRK06928          3 KIGFIGY-GSMADMIATKLLETEVATPEEII-LYSSSKNEHFNQLYDKYPTVELADNEAEIFT--KCDHSFICVPPLAVL   78 (277)
T ss_pred             EEEEECc-cHHHHHHHHHHHHCCCCCcccEE-EEeCCcHHHHHHHHHHcCCeEEeCCHHHHHh--hCCEEEEecCHHHHH
Confidence            4667798 999999999998877    4444 56654310  11    223445567777765  589999999999999


Q ss_pred             HHHHHHHHc--CCcEEEEecCCCChhhHHH
Q 019500          114 AAILEAMEA--ELDLVVCITEGIPQHDMVR  141 (340)
Q Consensus       114 ~~v~ea~~~--Gvk~vvi~t~Gf~e~~~~~  141 (340)
                      ++++++...  .-+.++.++.|++.+++++
T Consensus        79 ~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~  108 (277)
T PRK06928         79 PLLKDCAPVLTPDRHVVSIAAGVSLDDLLE  108 (277)
T ss_pred             HHHHHHHhhcCCCCEEEEECCCCCHHHHHH
Confidence            999888542  1235677888997665443

>PRK08374 homoserine dehydrogenase; Provisional

Probab=97.05  E-value=0.0044  Score=60.83  Aligned_cols=121  Identities=19%  Similarity=0.124  Sum_probs=75.4

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHH--------cC--CeEEEeeCCCC-----CCceec---------C-cccc-------c
Q 019500           42 NTRVICQGITGKNGTFHTEQAIE--------YG--TKMVGGVTPKK-----GGTEHL---------G-LPVF-------N   89 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~--------~G--~~vv~~VnP~~-----~g~~i~---------G-~p~y-------~   89 (340)
                      .++|+|+|. |+.|+.+++.+.+        +|  .++++..|.+.     .|-.+.         | +.-|       +
T Consensus         2 ~i~VaIiG~-GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~   80 (336)
T PRK08374          2 EVKVSIFGF-GNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYN   80 (336)
T ss_pred             eeEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccC
Confidence            478899999 9999988876655        46  45665544321     011110         0 1111       1


Q ss_pred             -CHHHhhccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccC
Q 019500           90 -TVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKP  165 (340)
Q Consensus        90 -sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p  165 (340)
                       ++.++....++|++|.+++++.+.+...++++.|++.+ ..+.|.-....+++.+++ +++|.++.=.-+.|.--|
T Consensus        81 ~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VV-tanK~~la~~~~el~~la-~~~~~~~~~ea~v~~GiP  155 (336)
T PRK08374         81 FSPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVV-TSNKPPIAFHYDELLDLA-NERNLPYLFEATVMAGTP  155 (336)
T ss_pred             CCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEE-ECCHHHHHhCHHHHHHHH-HHcCCeEEEeccccccCC
Confidence             56677643469999999999999999999999999974 345441112234555554 678887664444443333

>PRK06091 membrane protein FdrA; Validated

Probab=97.04  E-value=0.3  Score=51.00  Aligned_cols=253  Identities=18%  Similarity=0.168  Sum_probs=138.9

Q ss_pred             cCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC--CceecCcccccCHHHhhccCCCcEEEEec--ChhhHH
Q 019500           38 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--GTEHLGLPVFNTVAEAKAETKANASAIYV--PPPFAA  113 (340)
Q Consensus        38 f~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~--g~~i~G~p~y~sl~dip~~~~vDlavi~v--p~~~v~  113 (340)
                      +.+-++.  +++.||.++..+...+.+.|..+-+.|.-...  .+++.|+..-.-|+-+.+....++++++.  |.+.+.
T Consensus       191 ~~~G~Ig--iVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~kppaE~v~  268 (555)
T PRK06091        191 MPEGNIG--VIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVSKPPAEAVR  268 (555)
T ss_pred             CCCCCEE--EEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEEecCchHHH
Confidence            3344555  45999998888888887765543333443220  01244655555566665544678888888  445555


Q ss_pred             HHHHHHH-HcCCcEEEEecCCCChh-----------hHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCCCCCCC
Q 019500          114 AAILEAM-EAELDLVVCITEGIPQH-----------DMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPG  181 (340)
Q Consensus       114 ~~v~ea~-~~Gvk~vvi~t~Gf~e~-----------~~~~l~~~aar~~girviGPNc~Gi~~p~~~~~~~~~~~~~~~G  181 (340)
                      +-+.+++ +.+.+. |++-.|-++.           +.+++.+.+..-.+......+   +           +  .+..+
T Consensus       269 ~~fl~aar~~~KPV-Vvlk~Grs~~g~~q~GVi~a~tleEl~~~A~~la~~~~~~~~---~-----------~--~~~~~  331 (555)
T PRK06091        269 LKIINAMKATGKPV-VALFLGYTPAVARDENVWFASTLDEAARLACLLSRVTAQRNA---I-----------L--PVSQG  331 (555)
T ss_pred             HHHHHHHhhCCCCE-EEEEecCCchhhhcCCeEEeCCHHHHHHHHHHHhcccccccc---c-----------c--cccCC
Confidence            5444444 445554 5566665442           233333332100011111111   0           0  02223


Q ss_pred             cEEEEecChHHHHHHHHHHHhCCCCce----------------EEeecCCCCCC------CCCH---HHHHHHhhcCCCc
Q 019500          182 RIGIVSRSGTLTYEAVFQTTAVGLGQS----------------TCVGIGGDPFN------GTNF---VDCVTKFIADPQT  236 (340)
Q Consensus       182 ~valvSQSG~l~~~~~~~~~~~giG~S----------------~~vs~Gn~a~~------dv~~---~d~l~~l~~Dp~T  236 (340)
                      .|==+.--|+++.+.+ .+.+...++.                .+|-+|.+.|+      .+|.   .+.|.-.+.||+|
T Consensus       332 ~irGly~GGTL~~Ea~-~~~~~~~~~~~~~~~~~~~~l~~~~h~~iDlGdD~~T~GrpHPMIDp~~R~~~~~~~a~dp~~  410 (555)
T PRK06091        332 FICGLYTGGTLAAEAA-GLLAGHLGVEADDEHHHGMMLDADGHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQV  410 (555)
T ss_pred             eeEEEecCchHHHHHH-HHHHhcCCCccCCcCCccceeecCCceEEecCcccccCCCCCCCcChHHHHHHHHHhccCCcc
Confidence            3333334589999887 5655554433                35556655421      1222   3556667789999


Q ss_pred             cEEEEEEc-cCCCcHHHHHHHHHHh------C---CCCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHH
Q 019500          237 EGIILIGE-IGGTAEEDAAALIKES------G---TEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQD  306 (340)
Q Consensus       237 ~~I~ly~E-~~g~~~~~~~~f~~a~------r---~~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~  306 (340)
                      .+|+|-+. +.|....-+..++.++      +   |.-+||+...|.-.. -                       -+.+-
T Consensus       411 ~VillD~vlGyGah~dpa~~l~~ai~~~~~~~~~~r~l~~v~~v~GT~~D-p-----------------------Q~~~~  466 (555)
T PRK06091        411 RVLLLDVVIGFGATADPAGSLVSAIQKACAARADGQPLYAIATVTGTERD-P-----------------------QCRSQ  466 (555)
T ss_pred             eEEEEEeeeccCCCCChHHHHHHHHHHHHhhhhcCCceEEEEEEeCCCCC-C-----------------------cCHHH
Confidence            99999766 3444322223444332      2   445666677774333 1                       12233


Q ss_pred             HHHHHHHcCCeecCCHHHHHHHHHHHHH
Q 019500          307 KIKTLREAGVTVVESPAKIGAAMLEVFK  334 (340)
Q Consensus       307 ~~a~~~qaGvv~v~~~~el~~~~~~~~~  334 (340)
                      -.+.|+.+|+++++|-.+...++..+..
T Consensus       467 q~~~L~~aGv~v~~sn~~a~~~a~~~~~  494 (555)
T PRK06091        467 QIATLEDAGIAVVDSLPEATLLAAALIR  494 (555)
T ss_pred             HHHHHHhCCeEEEcCcHHHHHHHHHHhh
Confidence            4578999999999999999988887663

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.00  E-value=0.0042  Score=58.19  Aligned_cols=93  Identities=18%  Similarity=0.255  Sum_probs=65.7

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCC----eEEEee-CCCCCCce---ecCcccccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGT----KMVGGV-TPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~----~vv~~V-nP~~~g~~---i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~  115 (340)
                      +|.++|. |+||..+++.|.+.|+    +++ .. |++....+   -.|+....+..++.+  +.|++++++|++.+.++
T Consensus         2 kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~-v~~~r~~~~~~~~~~~g~~~~~~~~e~~~--~aDvVil~v~~~~~~~v   77 (266)
T PLN02688          2 RVGFIGA-GKMAEAIARGLVASGVVPPSRIS-TADDSNPARRDVFQSLGVKTAASNTEVVK--SSDVIILAVKPQVVKDV   77 (266)
T ss_pred             eEEEECC-cHHHHHHHHHHHHCCCCCcceEE-EEeCCCHHHHHHHHHcCCEEeCChHHHHh--cCCEEEEEECcHHHHHH
Confidence            4667798 9999999999999887    544 55 66541111   247777888888775  58999999999999999


Q ss_pred             HHHHHHc-CC-cEEEEecCCCChhhHH
Q 019500          116 ILEAMEA-EL-DLVVCITEGIPQHDMV  140 (340)
Q Consensus       116 v~ea~~~-Gv-k~vvi~t~Gf~e~~~~  140 (340)
                      ++++... .- +.+|-.++|.+.++.+
T Consensus        78 l~~l~~~~~~~~~iIs~~~g~~~~~l~  104 (266)
T PLN02688         78 LTELRPLLSKDKLLVSVAAGITLADLQ  104 (266)
T ss_pred             HHHHHhhcCCCCEEEEecCCCcHHHHH
Confidence            9877543 11 3345455777644443

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=96.98  E-value=0.0062  Score=60.59  Aligned_cols=76  Identities=14%  Similarity=0.159  Sum_probs=56.5

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHH
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea  119 (340)
                      |...+|+|+|..|.||..+++.+.+.|+++. .+|++.          ..+.+++..  +.|++++++|.....+++++.
T Consensus        96 ~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~-~~d~~~----------~~~~~~~~~--~aDlVilavP~~~~~~~~~~l  162 (374)
T PRK11199         96 PDLRPVVIVGGKGQLGRLFAKMLTLSGYQVR-ILEQDD----------WDRAEDILA--DAGMVIVSVPIHLTEEVIARL  162 (374)
T ss_pred             cccceEEEEcCCChhhHHHHHHHHHCCCeEE-EeCCCc----------chhHHHHHh--cCCEEEEeCcHHHHHHHHHHH
Confidence            4556788889669999999999999998854 666542          135556554  589999999999999999886


Q ss_pred             HHcCCcEEE
Q 019500          120 MEAELDLVV  128 (340)
Q Consensus       120 ~~~Gvk~vv  128 (340)
                      ....-..+|
T Consensus       163 ~~l~~~~iv  171 (374)
T PRK11199        163 PPLPEDCIL  171 (374)
T ss_pred             hCCCCCcEE
Confidence            653333433

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.97  E-value=0.0042  Score=61.73  Aligned_cols=96  Identities=16%  Similarity=0.117  Sum_probs=65.4

Q ss_pred             CcCCeEEEEeCCCCCcchHHHHHHHHcC-------Ce-EEEeeCCCCCC--------------ceec------CcccccC
Q 019500           39 VDKNTRVICQGITGKNGTFHTEQAIEYG-------TK-MVGGVTPKKGG--------------TEHL------GLPVFNT   90 (340)
Q Consensus        39 ~p~~iaViVvGasgk~G~~v~~~l~~~G-------~~-vv~~VnP~~~g--------------~~i~------G~p~y~s   90 (340)
                      ..+..+|.|+|+ |.+|+.++..+.+.|       .+ .+|.-|+...+              +-..      .+.+..+
T Consensus         8 ~~~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsd   86 (365)
T PTZ00345          8 RCGPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSD   86 (365)
T ss_pred             ccCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecC
Confidence            345667888899 999999999988776       45 45554542100              0011      2334556


Q ss_pred             HHHhhccCCCcEEEEecChhhHHHHHHHHHH--cC--CcEEEEecCCCChh
Q 019500           91 VAEAKAETKANASAIYVPPPFAAAAILEAME--AE--LDLVVCITEGIPQH  137 (340)
Q Consensus        91 l~dip~~~~vDlavi~vp~~~v~~~v~ea~~--~G--vk~vvi~t~Gf~e~  137 (340)
                      +.++.+  +.|++++++|+..+.+++++...  .-  -..+|.++-|+..+
T Consensus        87 l~eav~--~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~  135 (365)
T PTZ00345         87 LKEAVE--DADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVE  135 (365)
T ss_pred             HHHHHh--cCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccC
Confidence            777665  58999999999999999999875  21  12466688899643

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.95  E-value=0.0071  Score=57.57  Aligned_cols=95  Identities=14%  Similarity=0.150  Sum_probs=68.0

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCC---eEEEeeCCCCCC-ce---ecCcccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGG-TE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~---~vv~~VnP~~~g-~~---i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      +|.++|+ |+||..+++.|.+.|+   .-++..|++... +.   -.|+..+.+..++..  +.|++++++||..+.+++
T Consensus         4 ~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~--~aDiIiLavkP~~~~~vl   80 (272)
T PRK12491          4 QIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVAN--SADILILSIKPDLYSSVI   80 (272)
T ss_pred             eEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHh--hCCEEEEEeChHHHHHHH
Confidence            5677798 9999999999998775   235577875421 11   146777778888765  489999999999999999


Q ss_pred             HHHHHc--CCcEEEEecCCCChhhHHH
Q 019500          117 LEAMEA--ELDLVVCITEGIPQHDMVR  141 (340)
Q Consensus       117 ~ea~~~--Gvk~vvi~t~Gf~e~~~~~  141 (340)
                      ++....  +-+.+|=+..|++-+++++
T Consensus        81 ~~l~~~~~~~~lvISi~AGi~i~~l~~  107 (272)
T PRK12491         81 NQIKDQIKNDVIVVTIAAGKSIKSTEN  107 (272)
T ss_pred             HHHHHhhcCCcEEEEeCCCCcHHHHHH
Confidence            887642  2235566668987555443

>PLN02712 arogenate dehydrogenase

Probab=96.94  E-value=0.0072  Score=64.55  Aligned_cols=95  Identities=12%  Similarity=0.181  Sum_probs=67.2

Q ss_pred             CCCCCCCCCCCCcccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc--eecCcccccCHHHhhccCC
Q 019500           22 GQSRSFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETK   99 (340)
Q Consensus        22 ~~~~~~~~~~~~l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~--~i~G~p~y~sl~dip~~~~   99 (340)
                      .|--.|+...  -......+..+|.|+|. |+||..+++.|.+.|++++ .+|+....+  .-.|+..+.+++++... .
T Consensus       351 ~~~~~~~~~~--~~~~~~~~~~kIgIIGl-G~mG~slA~~L~~~G~~V~-~~dr~~~~~~a~~~Gv~~~~~~~el~~~-~  425 (667)
T PLN02712        351 AQKYEYNAQV--SGCVNDGSKLKIAIVGF-GNFGQFLAKTMVKQGHTVL-AYSRSDYSDEAQKLGVSYFSDADDLCEE-H  425 (667)
T ss_pred             cCCCCccchh--hhccCCCCCCEEEEEec-CHHHHHHHHHHHHCcCEEE-EEECChHHHHHHHcCCeEeCCHHHHHhc-C
Confidence            3444555542  22222345667888897 9999999999999998865 666553101  12466678889887642 4


Q ss_pred             CcEEEEecChhhHHHHHHHHHH
Q 019500          100 ANASAIYVPPPFAAAAILEAME  121 (340)
Q Consensus       100 vDlavi~vp~~~v~~~v~ea~~  121 (340)
                      .|++++++|+....+++++...
T Consensus       426 aDvVILavP~~~~~~vi~~l~~  447 (667)
T PLN02712        426 PEVILLCTSILSTEKVLKSLPF  447 (667)
T ss_pred             CCEEEECCChHHHHHHHHHHHH
Confidence            7999999999999999998764

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=96.91  E-value=0.0062  Score=58.47  Aligned_cols=110  Identities=15%  Similarity=0.149  Sum_probs=69.6

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccCCCcEEEEecChhh-HHHHHHH-
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAILE-  118 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~~vDlavi~vp~~~-v~~~v~e-  118 (340)
                      +|.++|. |+||..++++|.+.|+++. ..|++... ++  -.|.....+..++.+  ..|++++++|++. +.+++.. 
T Consensus         3 ~Ig~IGl-G~mG~~mA~~l~~~G~~V~-v~d~~~~~~~~~~~~g~~~~~s~~~~~~--~aDvVi~~vp~~~~~~~vl~~~   78 (296)
T PRK15461          3 AIAFIGL-GQMGSPMASNLLKQGHQLQ-VFDVNPQAVDALVDKGATPAASPAQAAA--GAEFVITMLPNGDLVRSVLFGE   78 (296)
T ss_pred             eEEEEee-CHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHcCCcccCCHHHHHh--cCCEEEEecCCHHHHHHHHcCc
Confidence            4667799 9999999999999999854 66765410 11  136667778888876  5899999999985 4444431 


Q ss_pred             --HHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEE-ccC
Q 019500          119 --AMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV-GPN  158 (340)
Q Consensus       119 --a~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi-GPN  158 (340)
                        ..+. .-..+++-++-++....+++.+.+ ++.|++++ .|-
T Consensus        79 ~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l-~~~g~~~ldapV  121 (296)
T PRK15461         79 NGVCEGLSRDALVIDMSTIHPLQTDKLIADM-QAKGFSMMDVPV  121 (296)
T ss_pred             ccHhhcCCCCCEEEECCCCCHHHHHHHHHHH-HHcCCcEEEccC
Confidence              2221 112233334434445556666655 56777766 444

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.89  E-value=0.0057  Score=61.13  Aligned_cols=105  Identities=10%  Similarity=0.121  Sum_probs=68.2

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcC-CeEEEeeCCCCCC-cee------------cCcccccCHHHhhccCCCcEEEEecC
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGG-TEH------------LGLPVFNTVAEAKAETKANASAIYVP  108 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G-~~vv~~VnP~~~g-~~i------------~G~p~y~sl~dip~~~~vDlavi~vp  108 (340)
                      .+|+|+|+ |+.|+.++.+|.+.+ +++. ..+..... ..+            ..+--.+.+.++..  +.|++|.+.|
T Consensus         2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~-iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~--~~d~VIn~~p   77 (389)
T COG1748           2 MKILVIGA-GGVGSVVAHKLAQNGDGEVT-IADRSKEKCARIAELIGGKVEALQVDAADVDALVALIK--DFDLVINAAP   77 (389)
T ss_pred             CcEEEECC-chhHHHHHHHHHhCCCceEE-EEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHh--cCCEEEEeCC
Confidence            36788899 999999999988877 7644 44433100 011            12222335666666  3699999999


Q ss_pred             hhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEE
Q 019500          109 PPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (340)
Q Consensus       109 ~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi  155 (340)
                      +.....+++.|++.|++.+- .| -..+. ..++.+.+ +++|+.++
T Consensus        78 ~~~~~~i~ka~i~~gv~yvD-ts-~~~~~-~~~~~~~a-~~Agit~v  120 (389)
T COG1748          78 PFVDLTILKACIKTGVDYVD-TS-YYEEP-PWKLDEEA-KKAGITAV  120 (389)
T ss_pred             chhhHHHHHHHHHhCCCEEE-cc-cCCch-hhhhhHHH-HHcCeEEE
Confidence            99999999999999999843 23 22222 23344443 56666654

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=96.88  E-value=0.0043  Score=61.08  Aligned_cols=91  Identities=14%  Similarity=0.161  Sum_probs=65.0

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCC-CCcee---cC-cc-----ccc--CHHHhhccCCCcEEEEecCh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK-GGTEH---LG-LP-----VFN--TVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~-~g~~i---~G-~p-----~y~--sl~dip~~~~vDlavi~vp~  109 (340)
                      ++|+|+|+||..|..+++.|.++ ++++++.+.++. .|+.+   .+ ++     .+.  +.+++.+  ++|++++|+|.
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~DvVf~alP~   78 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAE--DADVVFLALPH   78 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhc--CCCEEEECCCc
Confidence            36778899999999999999987 677775545433 33322   11 11     133  3445443  59999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCCh
Q 019500          110 PFAAAAILEAMEAELDLVVCITEGIPQ  136 (340)
Q Consensus       110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~e  136 (340)
                      ....+.+.++.++|++. |-.++.|.-
T Consensus        79 ~~s~~~~~~~~~~G~~V-IDlS~~fR~  104 (346)
T TIGR01850        79 GVSAELAPELLAAGVKV-IDLSADFRL  104 (346)
T ss_pred             hHHHHHHHHHHhCCCEE-EeCChhhhc
Confidence            99999999999999654 667877753

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=96.81  E-value=0.008  Score=59.21  Aligned_cols=90  Identities=16%  Similarity=0.125  Sum_probs=61.1

Q ss_pred             EEEeCCCCCcchHHHHHHHHcC--------Ce-EEEeeCC-------------CCCCce-ecC------cccccCHHHhh
Q 019500           45 VICQGITGKNGTFHTEQAIEYG--------TK-MVGGVTP-------------KKGGTE-HLG------LPVFNTVAEAK   95 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~G--------~~-vv~~VnP-------------~~~g~~-i~G------~p~y~sl~dip   95 (340)
                      |.|+|+ |++|+.++..+.+.|        .+ .+|..++             .+.... ..|      +....+++++.
T Consensus         2 I~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         2 VAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             EEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            566799 999999999888877        66 4444311             110000 113      33556788876


Q ss_pred             ccCCCcEEEEecChhhHHHHHHHHHHcC--CcEEEEecCCCChh
Q 019500           96 AETKANASAIYVPPPFAAAAILEAMEAE--LDLVVCITEGIPQH  137 (340)
Q Consensus        96 ~~~~vDlavi~vp~~~v~~~v~ea~~~G--vk~vvi~t~Gf~e~  137 (340)
                      +  +.|++++++|+....+++++....-  -+.+|.++-|+..+
T Consensus        81 ~--~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~  122 (342)
T TIGR03376        81 K--GADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVS  122 (342)
T ss_pred             h--cCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence            5  5899999999999999888876432  23467788899755

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK08655 prephenate dehydrogenase; Provisional

Probab=96.80  E-value=0.011  Score=60.07  Aligned_cols=110  Identities=15%  Similarity=0.154  Sum_probs=70.1

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~---i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea  119 (340)
                      +|.|+|..|.+|..+++.+.+.|+++. .++++... .+   -.|+....+..+..+  +.|++++++|++...+++++.
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~~V~-v~~r~~~~~~~~a~~~gv~~~~~~~e~~~--~aDvVIlavp~~~~~~vl~~l   78 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGFEVI-VTGRDPKKGKEVAKELGVEYANDNIDAAK--DADIVIISVPINVTEDVIKEV   78 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCCEEE-EEECChHHHHHHHHHcCCeeccCHHHHhc--cCCEEEEecCHHHHHHHHHHH
Confidence            567789779999999999999998744 44443210 11   246665667777665  589999999999999999887


Q ss_pred             HHcC-CcEEEEecCCCChhhHHHHHHHHhccCCcEEEccC
Q 019500          120 MEAE-LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN  158 (340)
Q Consensus       120 ~~~G-vk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPN  158 (340)
                      ...- -..+++-.+.......+.+.+..  ..+.+++|-.
T Consensus        79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~--~~~~~~V~~H  116 (437)
T PRK08655         79 APHVKEGSLLMDVTSVKERPVEAMEEYA--PEGVEILPTH  116 (437)
T ss_pred             HhhCCCCCEEEEcccccHHHHHHHHHhc--CCCCEEEEcC
Confidence            7542 23333333333333344444432  3356666543

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.79  E-value=0.01  Score=57.17  Aligned_cols=82  Identities=16%  Similarity=0.140  Sum_probs=60.1

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHHc
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEA  122 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~  122 (340)
                      .+|.|+|+ |++|+.+++.|.+.|+++. ..|++.  .        .+++++.+  +.|++++++|.+.+.++++.....
T Consensus         5 m~I~iiG~-G~~G~~lA~~l~~~G~~V~-~~~r~~--~--------~~~~~~~~--~advvi~~vp~~~~~~v~~~l~~~   70 (308)
T PRK14619          5 KTIAILGA-GAWGSTLAGLASANGHRVR-VWSRRS--G--------LSLAAVLA--DADVIVSAVSMKGVRPVAEQVQAL   70 (308)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCEEE-EEeCCC--C--------CCHHHHHh--cCCEEEEECChHHHHHHHHHHHHh
Confidence            45777899 9999999999999999865 667654  1        46777765  589999999999888888776542


Q ss_pred             CC---cEEEEecCCCChhh
Q 019500          123 EL---DLVVCITEGIPQHD  138 (340)
Q Consensus       123 Gv---k~vvi~t~Gf~e~~  138 (340)
                      ..   ..++..|.|+.++.
T Consensus        71 ~~~~~~ivi~~s~gi~~~~   89 (308)
T PRK14619         71 NLPPETIIVTATKGLDPET   89 (308)
T ss_pred             cCCCCcEEEEeCCcccCCC
Confidence            22   23444455776543

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.78  E-value=0.0042  Score=54.21  Aligned_cols=86  Identities=21%  Similarity=0.220  Sum_probs=59.7

Q ss_pred             EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccc-------cCHHHhhccCCCcEEEEecC-----hhhH
Q 019500           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF-------NTVAEAKAETKANASAIYVP-----PPFA  112 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y-------~sl~dip~~~~vDlavi~vp-----~~~v  112 (340)
                      |+|.|+||..|+.+++.|.+.|+++...+-....-++..++.+.       .++.+...  ++|.++.+.+     .+.+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~--~~d~vi~~~~~~~~~~~~~   78 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALK--GADAVIHAAGPPPKDVDAA   78 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHT--TSSEEEECCHSTTTHHHHH
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhh--hcchhhhhhhhhccccccc
Confidence            56789999999999999999999977555322100111222222       23555554  6999999998     4556


Q ss_pred             HHHHHHHHHcCCcEEEEecC
Q 019500          113 AAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       113 ~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      ..+++.|.+.|++.++++++
T Consensus        79 ~~~~~a~~~~~~~~~v~~s~   98 (183)
T PF13460_consen   79 KNIIEAAKKAGVKRVVYLSS   98 (183)
T ss_dssp             HHHHHHHHHTTSSEEEEEEE
T ss_pred             ccccccccccccccceeeec
Confidence            77777888889998877664

...

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=96.78  E-value=0.21  Score=46.84  Aligned_cols=88  Identities=13%  Similarity=0.082  Sum_probs=56.2

Q ss_pred             EEEeCCCCCcchHHHHHHHHcCCeEEEee-CCCCCC-ceecCcc-cccC---HHHhhc---c-CC-CcEEEEecCh----
Q 019500           45 VICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGG-TEHLGLP-VFNT---VAEAKA---E-TK-ANASAIYVPP----  109 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~G~~vv~~V-nP~~~g-~~i~G~p-~y~s---l~dip~---~-~~-vDlavi~vp~----  109 (340)
                      |+|.|+||..|+.+++.|.+.|+++...+ ||.... ..+..++ -|.+   +.+...   . .. +|.++.+.|.    
T Consensus         2 ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~~~~   81 (285)
T TIGR03649         2 ILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPIPDL   81 (285)
T ss_pred             EEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCCCCh
Confidence            67889999999999999999999866444 343210 1111111 2233   333321   0 14 7888877763    


Q ss_pred             -hhHHHHHHHHHHcCCcEEEEecC
Q 019500          110 -PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       110 -~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                       +....+++.|.+.|++.+|..++
T Consensus        82 ~~~~~~~i~aa~~~gv~~~V~~Ss  105 (285)
T TIGR03649        82 APPMIKFIDFARSKGVRRFVLLSA  105 (285)
T ss_pred             hHHHHHHHHHHHHcCCCEEEEeec
Confidence             34567888889999999776654

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.77  E-value=0.0091  Score=55.93  Aligned_cols=95  Identities=6%  Similarity=0.008  Sum_probs=63.6

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCe--EEEeeCCCCCC-ce----ecCcccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTK--MVGGVTPKKGG-TE----HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~--vv~~VnP~~~g-~~----i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      +|.++|+ |+||+.+.+.|.+.|+.  .+...|++... ++    ..|...+.+..++.+  +.|++++++|++...+++
T Consensus         2 ~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~--~aDvVilav~p~~~~~vl   78 (258)
T PRK06476          2 KIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVD--RSDVVFLAVRPQIAEEVL   78 (258)
T ss_pred             eEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHH--hCCEEEEEeCHHHHHHHH
Confidence            4667798 99999999999987764  23355654310 11    225677888888865  489999999999999988


Q ss_pred             HHHHHcCCcEEEEecCCCChhhHHH
Q 019500          117 LEAMEAELDLVVCITEGIPQHDMVR  141 (340)
Q Consensus       117 ~ea~~~Gvk~vvi~t~Gf~e~~~~~  141 (340)
                      ++..-..=+.++-+..|.+-+.+++
T Consensus        79 ~~l~~~~~~~vis~~ag~~~~~l~~  103 (258)
T PRK06476         79 RALRFRPGQTVISVIAATDRAALLE  103 (258)
T ss_pred             HHhccCCCCEEEEECCCCCHHHHHH
Confidence            7752112234454556665444443

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.74  E-value=0.013  Score=57.49  Aligned_cols=93  Identities=19%  Similarity=0.125  Sum_probs=62.9

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC------C---ceec-------CcccccCHHHhhccCCCcEEEE
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG------G---TEHL-------GLPVFNTVAEAKAETKANASAI  105 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~------g---~~i~-------G~p~y~sl~dip~~~~vDlavi  105 (340)
                      ..+|.|+|+ |.+|...+..|.+.|...++..+|...      +   +...       .+.+..++++..+  +.|++++
T Consensus         7 ~mkI~IiGa-Ga~G~alA~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~--~aDlVil   83 (341)
T PRK12439          7 EPKVVVLGG-GSWGTTVASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAAN--CADVVVM   83 (341)
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHh--cCCEEEE
Confidence            456788899 999999999998888444544443210      0   0011       1234456766554  5899999


Q ss_pred             ecChhhHHHHHHHHHHc-CCc-EEEEecCCCChh
Q 019500          106 YVPPPFAAAAILEAMEA-ELD-LVVCITEGIPQH  137 (340)
Q Consensus       106 ~vp~~~v~~~v~ea~~~-Gvk-~vvi~t~Gf~e~  137 (340)
                      ++|+..+.+++++.... .-+ .++.++-|+...
T Consensus        84 avps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~  117 (341)
T PRK12439         84 GVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQG  117 (341)
T ss_pred             EeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCC
Confidence            99999999999888754 222 467788899754

>PLN02712 arogenate dehydrogenase

Probab=96.70  E-value=0.017  Score=61.81  Aligned_cols=76  Identities=12%  Similarity=0.191  Sum_probs=58.0

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc--eecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~--~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea  119 (340)
                      ..+|.|+|. |+||..+++.|.+.|++++ .++++....  .-.|+..+.+.+++..+ ..|++++++|+....+++++.
T Consensus        52 ~~kIgIIG~-G~mG~slA~~L~~~G~~V~-~~dr~~~~~~A~~~Gv~~~~d~~e~~~~-~aDvViLavP~~~~~~vl~~l  128 (667)
T PLN02712         52 QLKIAIIGF-GNYGQFLAKTLISQGHTVL-AHSRSDHSLAARSLGVSFFLDPHDLCER-HPDVILLCTSIISTENVLKSL  128 (667)
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHcCCEEeCCHHHHhhc-CCCEEEEcCCHHHHHHHHHhh
Confidence            356888897 9999999999999998865 566543101  12477778888886532 489999999999999999886


Q ss_pred             H
Q 019500          120 M  120 (340)
Q Consensus       120 ~  120 (340)
                      .
T Consensus       129 ~  129 (667)
T PLN02712        129 P  129 (667)
T ss_pred             h
Confidence            4

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.67  E-value=0.013  Score=56.41  Aligned_cols=112  Identities=20%  Similarity=0.189  Sum_probs=67.5

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCC-eEEEeeCCCCCCce---ecCc--ccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGGTE---HLGL--PVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~-~vv~~VnP~~~g~~---i~G~--p~y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      .+|.|+|+ |.+|..+++.+.+.|+ ..+..++++....+   -.|.  ....+..+..+  +.|++++++|+....+++
T Consensus         7 ~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~--~aDvViiavp~~~~~~v~   83 (307)
T PRK07502          7 DRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVK--GADLVILCVPVGASGAVA   83 (307)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhc--CCCEEEECCCHHHHHHHH
Confidence            35777897 9999999999998886 23446676541001   1232  23456666654  589999999999888888


Q ss_pred             HHHHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCC
Q 019500          117 LEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC  159 (340)
Q Consensus       117 ~ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc  159 (340)
                      ++.... .-+.+++-.++....-.+++.+..  ..++++++-+.
T Consensus        84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~--~~~~~~v~~hP  125 (307)
T PRK07502         84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHL--PEGVHFIPGHP  125 (307)
T ss_pred             HHHHhhCCCCCEEEeCccchHHHHHHHHHhC--CCCCeEEeCCC
Confidence            776543 223344334444433333333321  34667776443

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=96.64  E-value=0.012  Score=60.80  Aligned_cols=115  Identities=13%  Similarity=0.004  Sum_probs=72.7

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee------cCcc---cccCHHHhhcc-CCCcEEEEecChhhH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH------LGLP---VFNTVAEAKAE-TKANASAIYVPPPFA  112 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i------~G~p---~y~sl~dip~~-~~vDlavi~vp~~~v  112 (340)
                      +|.++|. |.||+.+++||.+.||++. .-|+.... +++      .|..   .+.|++|+.+. ..+|++++++|....
T Consensus         8 ~IG~IGL-G~MG~~mA~nL~~~G~~V~-V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~a   85 (493)
T PLN02350          8 RIGLAGL-AVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAP   85 (493)
T ss_pred             CEEEEee-HHHHHHHHHHHHhCCCeEE-EECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHH
Confidence            3566699 9999999999999999855 55665411 111      1433   67899998862 248999999998765


Q ss_pred             HHHH-HHHHHcC-CcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCC
Q 019500          113 AAAI-LEAMEAE-LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG  161 (340)
Q Consensus       113 ~~~v-~ea~~~G-vk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~G  161 (340)
                      .+.+ +.....- -..+||=.+-...++.+++.+.+ ++.|+++++---.|
T Consensus        86 V~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l-~~~Gi~fldapVSG  135 (493)
T PLN02350         86 VDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEA-AEKGLLYLGMGVSG  135 (493)
T ss_pred             HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHH-HHcCCeEEeCCCcC
Confidence            5544 4444331 22233333333344555555555 67889988755554

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=96.64  E-value=0.012  Score=56.56  Aligned_cols=118  Identities=24%  Similarity=0.280  Sum_probs=79.3

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCe-EEEeeCCCCCCc--eecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHH--
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE--  118 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~-vv~~VnP~~~g~--~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e--  118 (340)
                      +|..+|. |.||.-.+++|.+.||+ .+|-.+|...-+  .-.|...+.+..|...  ..|++|.++|.......+-.  
T Consensus         2 kIafIGL-G~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~--~aDvVitmv~~~~~V~~V~~g~   78 (286)
T COG2084           2 KIAFIGL-GIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAA--EADVVITMLPDDAAVRAVLFGE   78 (286)
T ss_pred             eEEEEcC-chhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHH--hCCEEEEecCCHHHHHHHHhCc
Confidence            4556699 99999999999999998 444444443101  1348899999988887  59999999998666554442  


Q ss_pred             --HHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEE-ccCCCCcccC
Q 019500          119 --AMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV-GPNCPGVIKP  165 (340)
Q Consensus       119 --a~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi-GPNc~Gi~~p  165 (340)
                        .++. .-..+||-.+-.+.+..+++.+.+ ++.|++.+ .|=+-|....
T Consensus        79 ~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~-~~~G~~~lDAPVsGg~~~A  128 (286)
T COG2084          79 NGLLEGLKPGAIVIDMSTISPETARELAAAL-AAKGLEFLDAPVSGGVPGA  128 (286)
T ss_pred             cchhhcCCCCCEEEECCCCCHHHHHHHHHHH-HhcCCcEEecCccCCchhh
Confidence              2221 223455556666777777777776 67887765 5555555443

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=96.59  E-value=0.013  Score=60.00  Aligned_cols=113  Identities=12%  Similarity=0.065  Sum_probs=71.3

Q ss_pred             EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee--c-----CcccccCHHHhhcc-CCCcEEEEecCh-hhHHH
Q 019500           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--L-----GLPVFNTVAEAKAE-TKANASAIYVPP-PFAAA  114 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i--~-----G~p~y~sl~dip~~-~~vDlavi~vp~-~~v~~  114 (340)
                      |.++|. |.||..++++|.+.|+++. ..|++... ++.  .     ++..+.+++++.+. ..+|++++++|+ +.+.+
T Consensus         2 IG~IGL-G~MG~~mA~nL~~~G~~V~-v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~   79 (467)
T TIGR00873         2 IGVIGL-AVMGSNLALNMADHGFTVS-VYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDA   79 (467)
T ss_pred             EEEEee-HHHHHHHHHHHHhcCCeEE-EEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHH
Confidence            445698 9999999999999999854 55654310 111  1     25677888887742 258999999999 56677


Q ss_pred             HHHHHHHcC-C-cEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCC
Q 019500          115 AILEAMEAE-L-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG  161 (340)
Q Consensus       115 ~v~ea~~~G-v-k~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~G  161 (340)
                      +++++...- - +.+|-.++....+..++ .+.+ ++.|+++++---.|
T Consensus        80 Vi~~l~~~L~~g~iIID~gns~~~~t~~~-~~~l-~~~gi~fvdapVsG  126 (467)
T TIGR00873        80 VINQLLPLLEKGDIIIDGGNSHYPDTERR-YKEL-KAKGILFVGSGVSG  126 (467)
T ss_pred             HHHHHHhhCCCCCEEEECCCcCHHHHHHH-HHHH-HhcCCEEEcCCCCC
Confidence            776665431 1 33444444443333333 3334 56788888655554

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.55  E-value=0.017  Score=55.96  Aligned_cols=90  Identities=12%  Similarity=0.102  Sum_probs=62.2

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC----------Cce-ec------CcccccCHHHhhccCCCcEEEEe
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG----------GTE-HL------GLPVFNTVAEAKAETKANASAIY  106 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~----------g~~-i~------G~p~y~sl~dip~~~~vDlavi~  106 (340)
                      +|.|+|+ |.+|......|.+.|+++. .++++..          +.. +.      +++.+.++.+...+ +.|+++++
T Consensus         2 kI~IiGa-Ga~G~ala~~L~~~g~~V~-l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~Dliiia   78 (326)
T PRK14620          2 KISILGA-GSFGTAIAIALSSKKISVN-LWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSD-NATCIILA   78 (326)
T ss_pred             EEEEECc-CHHHHHHHHHHHHCCCeEE-EEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhC-CCCEEEEE
Confidence            4667799 9999999999999898854 4444220          001 11      23355566665421 58999999


Q ss_pred             cChhhHHHHHHHHHH-c-C-CcEEEEecCCCCh
Q 019500          107 VPPPFAAAAILEAME-A-E-LDLVVCITEGIPQ  136 (340)
Q Consensus       107 vp~~~v~~~v~ea~~-~-G-vk~vvi~t~Gf~e  136 (340)
                      +|+..+.+++++... . + -..+++++.|+..
T Consensus        79 vks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~  111 (326)
T PRK14620         79 VPTQQLRTICQQLQDCHLKKNTPILICSKGIEK  111 (326)
T ss_pred             eCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence            999999999998876 3 2 2246778899955

>PRK06545 prephenate dehydrogenase; Validated

Probab=96.54  E-value=0.018  Score=56.94  Aligned_cols=107  Identities=21%  Similarity=0.254  Sum_probs=69.1

Q ss_pred             EEEeCCCCCcchHHHHHHHHcCCe-EEEeeCCCCCCcee---cCccc----ccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           45 VICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGTEH---LGLPV----FNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~G~~-vv~~VnP~~~g~~i---~G~p~----y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      |.|+|. |.||..+++.|.+.|++ .++..+|+.  .+.   .+..+    ..++.++..  +.|++++++|+....+++
T Consensus         3 I~iIG~-GliG~siA~~L~~~G~~v~i~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~--~aDlVilavP~~~~~~vl   77 (359)
T PRK06545          3 VLIVGL-GLIGGSLALAIKAAGPDVFIIGYDPSA--AQLARALGFGVIDELAADLQRAAA--EADLIVLAVPVDATAALL   77 (359)
T ss_pred             EEEEEe-CHHHHHHHHHHHhcCCCeEEEEeCCCH--HHHHHHhcCCCCcccccCHHHHhc--CCCEEEEeCCHHHHHHHH
Confidence            566799 99999999999999986 455667654  221   12222    245666654  589999999999999999


Q ss_pred             HHHHHc--CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccC
Q 019500          117 LEAMEA--ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN  158 (340)
Q Consensus       117 ~ea~~~--Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPN  158 (340)
                      ++....  .-+.++.-.++....-.+.+.+.  ...+.+++|-.
T Consensus        78 ~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~--~~~~~~~ig~H  119 (359)
T PRK06545         78 AELADLELKPGVIVTDVGSVKGAILAEAEAL--LGDLIRFVGGH  119 (359)
T ss_pred             HHHhhcCCCCCcEEEeCccccHHHHHHHHHh--cCCCCeEEeeC
Confidence            888752  22344433455554434444332  23466777743

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.54  E-value=0.023  Score=56.17  Aligned_cols=113  Identities=13%  Similarity=0.118  Sum_probs=75.9

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHH-cCCe---EEEeeCCCCCCcee--cC--ccccc-CHHHhhccCCCcEEEEecChh
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIE-YGTK---MVGGVTPKKGGTEH--LG--LPVFN-TVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~-~G~~---vv~~VnP~~~g~~i--~G--~p~y~-sl~dip~~~~vDlavi~vp~~  110 (340)
                      +++++|.|+||||-.|+...+.|.+ ..|+   +......+..|+.+  .|  +.+.+ +.+++ .  ++|+++.++|.+
T Consensus         3 ~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~~-~--~~Divf~a~~~~   79 (347)
T PRK06728          3 EKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSF-E--GVDIAFFSAGGE   79 (347)
T ss_pred             CCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHHh-c--CCCEEEECCChH
Confidence            4567888999999999999999985 4665   44455565555543  22  22222 33344 2  599999999999


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChh----------hHHHHHHHHhccCCcEEEccCCCC
Q 019500          111 FAAAAILEAMEAELDLVVCITEGIPQH----------DMVRVKAALNNQSKTRLVGPNCPG  161 (340)
Q Consensus       111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~----------~~~~l~~~aar~~girviGPNc~G  161 (340)
                      ...+.+.++.++|++. |-.++-|..+          ..+.+.    ...+ .|-.|||.=
T Consensus        80 ~s~~~~~~~~~~G~~V-ID~Ss~fR~~~~vplvvPEvN~e~i~----~~~~-iIanPnC~t  134 (347)
T PRK06728         80 VSRQFVNQAVSSGAIV-IDNTSEYRMAHDVPLVVPEVNAHTLK----EHKG-IIAVPNCSA  134 (347)
T ss_pred             HHHHHHHHHHHCCCEE-EECchhhcCCCCCCeEeCCcCHHHHh----ccCC-EEECCCCHH
Confidence            9999999999999754 5567666422          122222    2235 588899964

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.49  E-value=0.026  Score=55.28  Aligned_cols=116  Identities=15%  Similarity=0.101  Sum_probs=73.3

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCC--eEEEe-eCCCCCCce---ecC--cccccCHHHhhccCCCcEEEEecChhhHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGT--KMVGG-VTPKKGGTE---HLG--LPVFNTVAEAKAETKANASAIYVPPPFAAA  114 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~--~vv~~-VnP~~~g~~---i~G--~p~y~sl~dip~~~~vDlavi~vp~~~v~~  114 (340)
                      .+|.|+|++|..|+..++.|.+..|  ..+.+ -.++..|++   ..|  +++-.+..+.....++|+++.+.+.+...+
T Consensus         2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s~~   81 (334)
T COG0136           2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVSKE   81 (334)
T ss_pred             cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHHHH
Confidence            4677789999999999999998544  32323 334433443   222  233333334433336999999999999999


Q ss_pred             HHHHHHHcCCcEEEEecCCCChh----------hHHHHHHHHhccCCcEEEccCCCC
Q 019500          115 AILEAMEAELDLVVCITEGIPQH----------DMVRVKAALNNQSKTRLVGPNCPG  161 (340)
Q Consensus       115 ~v~ea~~~Gvk~vvi~t~Gf~e~----------~~~~l~~~aar~~girviGPNc~G  161 (340)
                      ...++.+.|+-. |--++-|.-+          -...+.+.  ++.|.-+.+|||.-
T Consensus        82 ~~p~~~~~G~~V-IdnsSa~Rm~~DVPLVVPeVN~~~l~~~--~~rg~IianpNCst  135 (334)
T COG0136          82 VEPKAAEAGCVV-IDNSSAFRMDPDVPLVVPEVNPEHLIDY--QKRGFIIANPNCST  135 (334)
T ss_pred             HHHHHHHcCCEE-EeCCcccccCCCCCEecCCcCHHHHHhh--hhCCCEEECCChHH
Confidence            999999999432 3334444321          13345443  23456788999954

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=96.48  E-value=0.019  Score=57.40  Aligned_cols=93  Identities=16%  Similarity=0.217  Sum_probs=62.4

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCceec-------C--cccccCHHHhhccCCCcEEEEecCh
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL-------G--LPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~i~-------G--~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      ++..+|.|+||||..|..+.+.|.++ .+++......+..|+.+.       +  .+.+.+++...- .++|+++.++|.
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~-~~~DvVf~Alp~  114 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADF-SDVDAVFCCLPH  114 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHh-cCCCEEEEcCCH
Confidence            45668888899999999999999887 677665555433333321       1  111222222100 258999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCC
Q 019500          110 PFAAAAILEAMEAELDLVVCITEGIP  135 (340)
Q Consensus       110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~  135 (340)
                      +...+.+... +.|.+ +|-+++.|.
T Consensus       115 ~~s~~i~~~~-~~g~~-VIDlSs~fR  138 (381)
T PLN02968        115 GTTQEIIKAL-PKDLK-IVDLSADFR  138 (381)
T ss_pred             HHHHHHHHHH-hCCCE-EEEcCchhc
Confidence            9999999885 77865 466777664

>PRK08507 prephenate dehydrogenase; Validated

Probab=96.43  E-value=0.017  Score=54.66  Aligned_cols=87  Identities=17%  Similarity=0.124  Sum_probs=58.5

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCe-EEEeeCCCCCCc---eecCcc-cccCHHHhhccCCCcEEEEecChhhHHHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGT---EHLGLP-VFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~-vv~~VnP~~~g~---~i~G~p-~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e  118 (340)
                      +|.|+|. |.||..+++.|.+.|+. .++.+|++....   .-.|.. .+.+..++.+   .|++++++|+..+.+++++
T Consensus         2 ~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~---aD~Vilavp~~~~~~~~~~   77 (275)
T PRK08507          2 KIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELKK---CDVIFLAIPVDAIIEILPK   77 (275)
T ss_pred             EEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHhc---CCEEEEeCcHHHHHHHHHH
Confidence            4677798 99999999999988863 344677654100   113432 3456777643   8999999999999999988


Q ss_pred             HHHcCCcEEEEecCCCC
Q 019500          119 AMEAELDLVVCITEGIP  135 (340)
Q Consensus       119 a~~~Gvk~vvi~t~Gf~  135 (340)
                      .....-.. +++..|-.
T Consensus        78 l~~l~~~~-iv~d~gs~   93 (275)
T PRK08507         78 LLDIKENT-TIIDLGST   93 (275)
T ss_pred             HhccCCCC-EEEECccc
Confidence            76522233 33455544

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=96.40  E-value=0.026  Score=55.66  Aligned_cols=120  Identities=11%  Similarity=0.094  Sum_probs=75.7

Q ss_pred             CcCCeEEEEeCCCCCcchHHHHHHHHcCC---eEEEeeCCCCCCcee--cCc-ccccCH--HHhhccCCCcEEEEecChh
Q 019500           39 VDKNTRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGGTEH--LGL-PVFNTV--AEAKAETKANASAIYVPPP  110 (340)
Q Consensus        39 ~p~~iaViVvGasgk~G~~v~~~l~~~G~---~vv~~VnP~~~g~~i--~G~-p~y~sl--~dip~~~~vDlavi~vp~~  110 (340)
                      ..+..+|.|+|+||..|..+++.|.+.++   ++.+....+..|+.+  .|. ..+.++  +++ .  ++|+++.++|.+
T Consensus         4 ~~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~-~--~~D~vf~a~p~~   80 (344)
T PLN02383          4 TENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSF-D--GVDIALFSAGGS   80 (344)
T ss_pred             cCCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHH-c--CCCEEEECCCcH
Confidence            34567888889999999999999988544   344344444334433  221 122222  233 2  599999999999


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChh----------hHHHHHHHH-hccCCcEEEccCCCCc
Q 019500          111 FAAAAILEAMEAELDLVVCITEGIPQH----------DMVRVKAAL-NNQSKTRLVGPNCPGV  162 (340)
Q Consensus       111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~----------~~~~l~~~a-ar~~girviGPNc~Gi  162 (340)
                      ...+.+.++.++|++. |-.++-|.-+          ..+.+...- .++.+-.|-.|||.=.
T Consensus        81 ~s~~~~~~~~~~g~~V-IDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~iIanPgC~~t  142 (344)
T PLN02383         81 ISKKFGPIAVDKGAVV-VDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGALIANPNCSTI  142 (344)
T ss_pred             HHHHHHHHHHhCCCEE-EECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcEEECCCcHHH
Confidence            9999999999999864 6677666322          123333210 0122347889999643

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.40  E-value=0.012  Score=57.82  Aligned_cols=92  Identities=11%  Similarity=0.084  Sum_probs=64.9

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcCC---eEEEeeCCCCCCcee--cCcc-ccc--CHHHhhccCCCcEEEEecChhh
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGGTEH--LGLP-VFN--TVAEAKAETKANASAIYVPPPF  111 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G~---~vv~~VnP~~~g~~i--~G~p-~y~--sl~dip~~~~vDlavi~vp~~~  111 (340)
                      +++++|.|+||||..|..+++.|.+.++   ++.+..+.+..|+.+  .|.. .+.  +..++ .  ++|++++++|+..
T Consensus         2 ~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~~-~--~vD~vFla~p~~~   78 (336)
T PRK05671          2 SQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFDF-S--QVQLAFFAAGAAV   78 (336)
T ss_pred             CCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHHh-c--CCCEEEEcCCHHH
Confidence            3457888899999999999999996443   355556665545433  2210 111  12223 2  5999999999999


Q ss_pred             HHHHHHHHHHcCCcEEEEecCCCC
Q 019500          112 AAAAILEAMEAELDLVVCITEGIP  135 (340)
Q Consensus       112 v~~~v~ea~~~Gvk~vvi~t~Gf~  135 (340)
                      ..+.+.++.++|++. |-.++.|.
T Consensus        79 s~~~v~~~~~~G~~V-IDlS~~fR  101 (336)
T PRK05671         79 SRSFAEKARAAGCSV-IDLSGALP  101 (336)
T ss_pred             HHHHHHHHHHCCCeE-EECchhhc
Confidence            999999999999874 67787774

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=96.37  E-value=0.027  Score=49.62  Aligned_cols=82  Identities=16%  Similarity=0.181  Sum_probs=60.5

Q ss_pred             EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCC--CCCceecCcccccCHHHhhcc-CCCcEEEEecC-hhhHHHHHHHHH
Q 019500           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPK--KGGTEHLGLPVFNTVAEAKAE-TKANASAIYVP-PPFAAAAILEAM  120 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~--~~g~~i~G~p~y~sl~dip~~-~~vDlavi~vp-~~~v~~~v~ea~  120 (340)
                      ++|+|+ +..|+.+++.|++.||++++.++.+  ..++.+.|+|+|.+.+++..- .+.+.++++++ +....++++.+.
T Consensus         2 ~~I~Ga-g~~g~~~~~~l~~~g~~vvgfid~~~~~~~~~i~g~pvlg~~~~l~~~~~~~~~~iiai~~~~~~~~i~~~l~   80 (201)
T TIGR03570         2 LVIIGA-GGHGRVVADIAEDSGWEIVGFLDDNPALQGTSVDGLPVLGGDEDLLRYPPDEVDLVVAIGDNKLRRRLFEKLK   80 (201)
T ss_pred             EEEEcC-CHHHHHHHHHHHhCCCEEEEEEcCCccccCcccCCccEECCHHHHhhhcccccEEEEEcCCHHHHHHHHHHHH
Confidence            678899 8899999999988899988777643  234678999999887776532 13578888885 455566677777


Q ss_pred             HcCCcEE
Q 019500          121 EAELDLV  127 (340)
Q Consensus       121 ~~Gvk~v  127 (340)
                      +.+++..
T Consensus        81 ~~g~~~~   87 (201)
T TIGR03570        81 AKGYRFA   87 (201)
T ss_pred             hCCCcce
Confidence            7776553

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.35  E-value=0.02  Score=56.23  Aligned_cols=90  Identities=13%  Similarity=0.121  Sum_probs=63.7

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCceecCcccccC-------------HHHhhccCCCcEEEEec
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNT-------------VAEAKAETKANASAIYV  107 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~i~G~p~y~s-------------l~dip~~~~vDlavi~v  107 (340)
                      +++|.|+|+||-.|-.+.+.|.++ ..++......++.|+.+..  .|++             .+++ +..++|++++++
T Consensus         2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~--~~p~l~g~~~l~~~~~~~~~~-~~~~~DvvFlal   78 (349)
T COG0002           2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSD--VHPNLRGLVDLPFQTIDPEKI-ELDECDVVFLAL   78 (349)
T ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHH--hCcccccccccccccCChhhh-hcccCCEEEEec
Confidence            578899999999999999999886 4564433333323333321  1222             2333 222489999999


Q ss_pred             ChhhHHHHHHHHHHcCCcEEEEecCCCC
Q 019500          108 PPPFAAAAILEAMEAELDLVVCITEGIP  135 (340)
Q Consensus       108 p~~~v~~~v~ea~~~Gvk~vvi~t~Gf~  135 (340)
                      |.....+.+.+..+.|++ ||-+++.|.
T Consensus        79 Phg~s~~~v~~l~~~g~~-VIDLSadfR  105 (349)
T COG0002          79 PHGVSAELVPELLEAGCK-VIDLSADFR  105 (349)
T ss_pred             CchhHHHHHHHHHhCCCe-EEECCcccc
Confidence            999999999999999999 577887764

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.33  E-value=0.025  Score=56.26  Aligned_cols=114  Identities=13%  Similarity=0.099  Sum_probs=71.7

Q ss_pred             eEEEEeCCCCCcchHHHHHHH-HcCCe---EEEeeCCCCCCcee---cC--ccccc--CHHHhhccCCCcEEEEecChhh
Q 019500           43 TRVICQGITGKNGTFHTEQAI-EYGTK---MVGGVTPKKGGTEH---LG--LPVFN--TVAEAKAETKANASAIYVPPPF  111 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~-~~G~~---vv~~VnP~~~g~~i---~G--~p~y~--sl~dip~~~~vDlavi~vp~~~  111 (340)
                      ++|+|+||||-.|+.+.+.++ +..+.   ++. +.....|+..   .|  ..++.  +.+++ .  ++|+++.+.|.+.
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~-~ss~~sg~~~~~f~g~~~~v~~~~~~~~~-~--~~Divf~a~~~~~   77 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVF-FSTSQAGGAAPSFGGKEGTLQDAFDIDAL-K--KLDIIITCQGGDY   77 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEE-ecchhhCCcccccCCCcceEEecCChhHh-c--CCCEEEECCCHHH
Confidence            467788999999999998444 45665   554 4332222222   23  22332  23333 2  5999999999999


Q ss_pred             HHHHHHHHHHcCCcE-EEEecCCCChh----------hHHHHHHHHhccCCc-EEEccCCCCc
Q 019500          112 AAAAILEAMEAELDL-VVCITEGIPQH----------DMVRVKAALNNQSKT-RLVGPNCPGV  162 (340)
Q Consensus       112 v~~~v~ea~~~Gvk~-vvi~t~Gf~e~----------~~~~l~~~aar~~gi-rviGPNc~Gi  162 (340)
                      ..+...++.++|++. +|-.++-|.-+          ..+.+...  .+.|+ .+..|||.=.
T Consensus        78 s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~--~~~g~~iIanPnC~tt  138 (369)
T PRK06598         78 TNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDA--LANGVKTFVGGNCTVS  138 (369)
T ss_pred             HHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhh--hhcCCCEEEcCChHHH
Confidence            999999999999873 45555545322          12333321  24565 5779999643

>PRK14046 malate--CoA ligase subunit beta; Provisional

Probab=96.29  E-value=0.086  Score=52.91  Aligned_cols=123  Identities=17%  Similarity=0.270  Sum_probs=84.1

Q ss_pred             CCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCc-HHHHHHHH
Q 019500          179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTA-EEDAAALI  257 (340)
Q Consensus       179 ~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~-~~~~~~f~  257 (340)
                      ..|+|++++-.++++.+.+|.....|....-++-+|..+ ..-.+.+.++.+.+||++++|++.+-+.-+. ..-+..+.
T Consensus       255 l~G~ig~i~nGaGl~m~t~D~i~~~gg~paNPlDlgg~a-~~e~~~~aL~~ll~Dp~VdaVlv~i~ggi~~~~~vA~~Ii  333 (392)
T PRK14046        255 LDGDIGCIVNGAGLAMATMDMIKLAGGEPANFLDVGGGA-SPERVAKAFRLVLSDRNVKAILVNIFAGINRCDWVAEGVV  333 (392)
T ss_pred             cCCcEEEEeCCccHHHHHHHHHHhcCCCCcCCEEecCCC-CHHHHHHHHHHHHcCCCCCEEEEEcCCCCCCHHHHHHHHH
Confidence            569999999999999999999999998777788777654 3566789999999999999999765421111 12223333


Q ss_pred             HHhC---CCCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCC--eecCCHHHHHHHHHH
Q 019500          258 KESG---TEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGV--TVVESPAKIGAAMLE  331 (340)
Q Consensus       258 ~a~r---~~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGv--v~v~~~~el~~~~~~  331 (340)
                      ++.+   .+|||++.-.|                             ...+.....|+++|+  ...+|++|-...+-+
T Consensus       334 ~a~~~~~~~kPvvv~l~G-----------------------------~~~e~~~~iL~~~Gipvf~~~~~~~a~~~~v~  383 (392)
T PRK14046        334 QAAREVGIDVPLVVRLAG-----------------------------TNVEEGRKILAESGLPIITADTLAEAAEKAVE  383 (392)
T ss_pred             HHHHhcCCCCcEEEEcCC-----------------------------CCHHHHHHHHHHcCCCeeecCCHHHHHHHHHH
Confidence            3333   47899664433                             123345677888895  555666655544443

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.25  E-value=0.019  Score=54.62  Aligned_cols=89  Identities=11%  Similarity=0.132  Sum_probs=57.8

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecC-cccc-cCHHHhhccCCCcEEEEecChhhHHHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLG-LPVF-NTVAEAKAETKANASAIYVPPPFAAAAILE  118 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G-~p~y-~sl~dip~~~~vDlavi~vp~~~v~~~v~e  118 (340)
                      +|.|+|. |.||..++..|.+.|+++. .++++... +.  -.| +... .+.+ ...  +.|++++++|+..+.+++++
T Consensus         2 ~I~IIG~-G~mG~sla~~L~~~g~~V~-~~d~~~~~~~~a~~~g~~~~~~~~~~-~~~--~aDlVilavp~~~~~~~~~~   76 (279)
T PRK07417          2 KIGIVGL-GLIGGSLGLDLRSLGHTVY-GVSRRESTCERAIERGLVDEASTDLS-LLK--DCDLVILALPIGLLLPPSEQ   76 (279)
T ss_pred             eEEEEee-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHCCCcccccCCHh-Hhc--CCCEEEEcCCHHHHHHHHHH
Confidence            4677798 9999999999999998754 66665310 11  122 2223 2343 333  58999999999999999888


Q ss_pred             HHHc-CCcEEEEecCCCChh
Q 019500          119 AMEA-ELDLVVCITEGIPQH  137 (340)
Q Consensus       119 a~~~-Gvk~vvi~t~Gf~e~  137 (340)
                      .... .-+.+|.-+++....
T Consensus        77 l~~~l~~~~ii~d~~Svk~~   96 (279)
T PRK07417         77 LIPALPPEAIVTDVGSVKAP   96 (279)
T ss_pred             HHHhCCCCcEEEeCcchHHH
Confidence            7764 333444334455433

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=96.25  E-value=0.031  Score=57.43  Aligned_cols=114  Identities=11%  Similarity=0.026  Sum_probs=71.7

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee------cC--cccccCHHHhhcc-CCCcEEEEecCh-hhH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH------LG--LPVFNTVAEAKAE-TKANASAIYVPP-PFA  112 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i------~G--~p~y~sl~dip~~-~~vDlavi~vp~-~~v  112 (340)
                      +|.|+|. |.||..++++|.+.|+++. ..|.+... +++      .|  +..+.+++|+.+. .++|++++++|+ +.+
T Consensus         3 ~IgvIGL-G~MG~~lA~nL~~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v   80 (470)
T PTZ00142          3 DIGLIGL-AVMGQNLALNIASRGFKIS-VYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAV   80 (470)
T ss_pred             EEEEEeE-hHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHH
Confidence            4667799 9999999999999999844 55654310 111      14  3367899998752 148988888665 566


Q ss_pred             HHHHHHHHHcCC--cEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCC
Q 019500          113 AAAILEAMEAEL--DLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG  161 (340)
Q Consensus       113 ~~~v~ea~~~Gv--k~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~G  161 (340)
                      .+++++....--  +.+|..++++.+...+ +.+.+ ++.|+++++---.|
T Consensus        81 ~~vi~~l~~~L~~g~iIID~gn~~~~dt~~-r~~~l-~~~Gi~fldapVSG  129 (470)
T PTZ00142         81 DETIDNLLPLLEKGDIIIDGGNEWYLNTER-RIKRC-EEKGILYLGMGVSG  129 (470)
T ss_pred             HHHHHHHHhhCCCCCEEEECCCCCHHHHHH-HHHHH-HHcCCeEEcCCCCC
Confidence            667666554311  3344444555444333 33444 57899988755555

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.22  E-value=0.0077  Score=59.66  Aligned_cols=104  Identities=15%  Similarity=0.223  Sum_probs=63.3

Q ss_pred             EEEeCCCCCcchHHHHHHHHcC-C-e-EEEeeCCCCC--------Ccee----cCcccccCHHHhhccCCCcEEEEecCh
Q 019500           45 VICQGITGKNGTFHTEQAIEYG-T-K-MVGGVTPKKG--------GTEH----LGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~G-~-~-vv~~VnP~~~--------g~~i----~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      |+|+|+ |.+|+.+++.|.+.+ + + +++.-|+...        +..+    ..+.-..+|.++..  +.|++|-++|+
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~--~~dvVin~~gp   77 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLR--GCDVVINCAGP   77 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT--TSSEEEE-SSG
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHh--cCCEEEECCcc
Confidence            567899 999999999999864 5 4 3333343320        0011    11122234666665  57999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEE
Q 019500          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (340)
Q Consensus       110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi  155 (340)
                      .....+++.|++.|++.+ -  +.+-.+...++.+.+ +++|+.++
T Consensus        78 ~~~~~v~~~~i~~g~~yv-D--~~~~~~~~~~l~~~a-~~~g~~~l  119 (386)
T PF03435_consen   78 FFGEPVARACIEAGVHYV-D--TSYVTEEMLALDEEA-KEAGVTAL  119 (386)
T ss_dssp             GGHHHHHHHHHHHT-EEE-E--SS-HHHHHHHCHHHH-HHTTSEEE
T ss_pred             chhHHHHHHHHHhCCCee-c--cchhHHHHHHHHHHH-HhhCCEEE
Confidence            999999999999999973 2  333233344455554 56777765

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=96.20  E-value=0.019  Score=52.32  Aligned_cols=87  Identities=18%  Similarity=0.187  Sum_probs=59.2

Q ss_pred             EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC--Cce--ecCccc----ccCHHHhhcc-CCCcEEEEecC------h
Q 019500           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--GTE--HLGLPV----FNTVAEAKAE-TKANASAIYVP------P  109 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~--g~~--i~G~p~----y~sl~dip~~-~~vDlavi~vp------~  109 (340)
                      |+|+|++|+.|+.+++.|.+.++++.+.+.+...  -++  -.|..+    |.+.+++.+. .++|.+++++|      .
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~   80 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSHPSEL   80 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHH
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcchhhhh
Confidence            4677999999999999999999988777775320  001  123221    3344444322 37999999999      4


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecC
Q 019500          110 PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       110 ~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      +....+++.|.+.||+.++ +++
T Consensus        81 ~~~~~li~Aa~~agVk~~v-~ss  102 (233)
T PF05368_consen   81 EQQKNLIDAAKAAGVKHFV-PSS  102 (233)
T ss_dssp             HHHHHHHHHHHHHT-SEEE-ESE
T ss_pred             hhhhhHHHhhhccccceEE-EEE
Confidence            5677889999999999976 553

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.19  E-value=0.022  Score=52.19  Aligned_cols=90  Identities=19%  Similarity=0.146  Sum_probs=59.2

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--------e--cCc--ccc-cCHHHhhccCCCcEEEEecCh
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--------H--LGL--PVF-NTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--------i--~G~--p~y-~sl~dip~~~~vDlavi~vp~  109 (340)
                      +|.|+|.+|++|+.+.+.|.+.|++++ ..+++... +.        +  .|+  .+. .+..+..+  ..|++++++|+
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~-v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~--~aDvVilavp~   78 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKII-IGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAK--RADVVILAVPW   78 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEE-EEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHh--cCCEEEEECCH
Confidence            577788669999999999999998854 34443210 00        0  121  111 24455554  48999999999


Q ss_pred             hhHHHHHHHHHHc-CCcEEEEecCCCCh
Q 019500          110 PFAAAAILEAMEA-ELDLVVCITEGIPQ  136 (340)
Q Consensus       110 ~~v~~~v~ea~~~-Gvk~vvi~t~Gf~e  136 (340)
                      ....+++++.... .-+.++-++.|+..
T Consensus        79 ~~~~~~l~~l~~~l~~~vvI~~~ngi~~  106 (219)
T TIGR01915        79 DHVLKTLESLRDELSGKLVISPVVPLAS  106 (219)
T ss_pred             HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence            9999998877542 22566667778754

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK06444 prephenate dehydrogenase; Provisional

Probab=96.13  E-value=0.013  Score=53.38  Aligned_cols=51  Identities=24%  Similarity=0.143  Sum_probs=43.8

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM  120 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~  120 (340)
                      +|.|+|.+|+||+...+.+.+.|+.+.                       +.   +.|++++|+|.....+++++..
T Consensus         2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~-----------------------~~---~~DlVilavPv~~~~~~i~~~~   52 (197)
T PRK06444          2 MEIIIGKNGRLGRVLCSILDDNGLGVY-----------------------IK---KADHAFLSVPIDAALNYIESYD   52 (197)
T ss_pred             EEEEEecCCcHHHHHHHHHHhCCCEEE-----------------------EC---CCCEEEEeCCHHHHHHHHHHhC
Confidence            577889999999999999999998753                       12   4899999999999999998864

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.12  E-value=0.028  Score=55.39  Aligned_cols=90  Identities=11%  Similarity=0.012  Sum_probs=62.4

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcC-CeEEEe-eCCCCCCceec---Ccccc--------------cCHHHhhccCCCcE
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYG-TKMVGG-VTPKKGGTEHL---GLPVF--------------NTVAEAKAETKANA  102 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G-~~vv~~-VnP~~~g~~i~---G~p~y--------------~sl~dip~~~~vDl  102 (340)
                      +++|+|+|++|.+|+.+++.|.++. ++++.. .++...|+.+.   +...|              .+.+++ .  ++|+
T Consensus         3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~--~~Dv   79 (349)
T PRK08664          3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-D--DVDI   79 (349)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-c--CCCE
Confidence            4678888999999999999988864 466654 44443333332   11111              023333 2  5899


Q ss_pred             EEEecChhhHHHHHHHHHHcCCcEEEEecCCCC
Q 019500          103 SAIYVPPPFAAAAILEAMEAELDLVVCITEGIP  135 (340)
Q Consensus       103 avi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~  135 (340)
                      ++.++|.....+.++++.+.|++. |..++-|.
T Consensus        80 Vf~a~p~~~s~~~~~~~~~~G~~v-IDls~~fR  111 (349)
T PRK08664         80 VFSALPSDVAGEVEEEFAKAGKPV-FSNASAHR  111 (349)
T ss_pred             EEEeCChhHHHHHHHHHHHCCCEE-EECCchhc
Confidence            999999999999999998999986 55666553

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.09  E-value=0.03  Score=54.84  Aligned_cols=91  Identities=14%  Similarity=0.062  Sum_probs=61.7

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCC---eEEEeeCCCCCCcee--cCcc-cccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGGTEH--LGLP-VFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~---~vv~~VnP~~~g~~i--~G~p-~y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      ++|.|+|+||..|..+++.|.+.++   ++.+....+..|+.+  .|.. .+.++++..- .++|+++.++|.....+.+
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~-~~vDvVf~A~g~g~s~~~~   80 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDF-SGVDIALFSAGGSVSKKYA   80 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHH-cCCCEEEECCChHHHHHHH
Confidence            5788889999999999999998654   456555554444443  2221 2222222111 1599999999999999999


Q ss_pred             HHHHHcCCcEEEEecCCCC
Q 019500          117 LEAMEAELDLVVCITEGIP  135 (340)
Q Consensus       117 ~ea~~~Gvk~vvi~t~Gf~  135 (340)
                      .++.++|+ .+|-+++.|.
T Consensus        81 ~~~~~~G~-~VIDlS~~~R   98 (334)
T PRK14874         81 PKAAAAGA-VVIDNSSAFR   98 (334)
T ss_pred             HHHHhCCC-EEEECCchhh
Confidence            99999998 3444566553

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=96.08  E-value=0.035  Score=54.06  Aligned_cols=83  Identities=13%  Similarity=0.151  Sum_probs=60.3

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcC-CeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM  120 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G-~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~  120 (340)
                      +++|.|+||||-.|..+.+.|.++. +++++...-..  ..+      ...++...  ++|+++.++|.....+.+.++.
T Consensus         2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~--~~~------~~~~~~~~--~~DvvFlalp~~~s~~~~~~~~   71 (313)
T PRK11863          2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKR--KDA------AARRELLN--AADVAILCLPDDAAREAVALID   71 (313)
T ss_pred             CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCC--Ccc------cCchhhhc--CCCEEEECCCHHHHHHHHHHHH
Confidence            4577888999999999999998874 45664433222  222      22233333  5899999999999999999999


Q ss_pred             HcCCcEEEEecCCCC
Q 019500          121 EAELDLVVCITEGIP  135 (340)
Q Consensus       121 ~~Gvk~vvi~t~Gf~  135 (340)
                      +.|++. |-+++.|.
T Consensus        72 ~~g~~V-IDlSadfR   85 (313)
T PRK11863         72 NPATRV-IDASTAHR   85 (313)
T ss_pred             hCCCEE-EECChhhh
Confidence            999874 66777664

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=95.97  E-value=0.043  Score=47.73  Aligned_cols=86  Identities=14%  Similarity=0.069  Sum_probs=52.9

Q ss_pred             eEEEEeCCCCCcchHHHHHHHH-cCCeEEEeeCCCCCC--------ceecCc-------------------ccc--cCHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG--------TEHLGL-------------------PVF--NTVA   92 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~-~G~~vv~~VnP~~~g--------~~i~G~-------------------p~y--~sl~   92 (340)
                      ++|+|+|+ |+||+.+.+.+.+ .++++++..+|....        +...|.                   +++  .+.+
T Consensus         1 ikv~I~G~-GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p~   79 (149)
T smart00846        1 IKVGINGF-GRIGRLVLRALLERPDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDPA   79 (149)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCChH
Confidence            46788899 9999999998775 477777655541100        112221                   111  2344


Q ss_pred             Hhh-ccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 019500           93 EAK-AETKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (340)
Q Consensus        93 dip-~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi  129 (340)
                      ++| .+..+|+++.|+..-...+..+.-++.|+|.+++
T Consensus        80 ~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkVii  117 (149)
T smart00846       80 NLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVII  117 (149)
T ss_pred             HCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEe
Confidence            444 2235788888866656666666677778888653

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=95.95  E-value=0.056  Score=58.18  Aligned_cols=108  Identities=19%  Similarity=0.184  Sum_probs=69.1

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCC-eEEEeeCCCCCCce---ecCcc--cccCHHHhhccCCCcEEEEecChhhHHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGGTE---HLGLP--VFNTVAEAKAETKANASAIYVPPPFAAAAIL  117 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~-~vv~~VnP~~~g~~---i~G~p--~y~sl~dip~~~~vDlavi~vp~~~v~~~v~  117 (340)
                      +|.|+|+ |++|..+++.+.+.|+ ..+..+|++....+   -.|..  ...++.+..+  +.|++++++|+..+.++++
T Consensus         5 ~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~--~aDvVilavp~~~~~~vl~   81 (735)
T PRK14806          5 RVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVS--GADVIVLAVPVLAMEKVLA   81 (735)
T ss_pred             EEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhc--CCCEEEECCCHHHHHHHHH
Confidence            4667798 9999999999999885 23446777641111   13432  3345666665  5899999999999999988


Q ss_pred             HHHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEE
Q 019500          118 EAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (340)
Q Consensus       118 ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi  155 (340)
                      +..+. .-+.+++..++....-.+.+.+.. ....+|++
T Consensus        82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~-~~~~~r~~  119 (735)
T PRK14806         82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVF-GELPAGFV  119 (735)
T ss_pred             HHHHhcCCCcEEEEcCCCchHHHHHHHHhc-cccCCeEE
Confidence            87653 223445445666544444454443 23356776

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.94  E-value=0.022  Score=54.46  Aligned_cols=91  Identities=14%  Similarity=0.103  Sum_probs=57.4

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce--------------------------ecC-cccccCHHHhhc
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--------------------------HLG-LPVFNTVAEAKA   96 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~--------------------------i~G-~p~y~sl~dip~   96 (340)
                      +|.|+|+ |.||..++..+...|++++ .+|++....+                          ..+ +.+..+.+++ +
T Consensus         6 ~V~vIG~-G~mG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~   82 (295)
T PLN02545          6 KVGVVGA-GQMGSGIAQLAAAAGMDVW-LLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEEL-R   82 (295)
T ss_pred             EEEEECC-CHHHHHHHHHHHhcCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHh-C
Confidence            4677799 9999999999999999855 5665431000                          011 2233455544 3


Q ss_pred             cCCCcEEEEecC--hhhHHHHHHHHHHcC-CcEEEE-ecCCCChhhH
Q 019500           97 ETKANASAIYVP--PPFAAAAILEAMEAE-LDLVVC-ITEGIPQHDM  139 (340)
Q Consensus        97 ~~~vDlavi~vp--~~~v~~~v~ea~~~G-vk~vvi-~t~Gf~e~~~  139 (340)
                        +.|+++.++|  ++.-..++.+..+.- -+.+++ -|++++..+.
T Consensus        83 --~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l  127 (295)
T PLN02545         83 --DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRL  127 (295)
T ss_pred             --CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH
Confidence              5899999999  666666666655432 223443 5778865543

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.91  E-value=0.043  Score=55.06  Aligned_cols=96  Identities=19%  Similarity=0.262  Sum_probs=60.5

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee---------------------cC-cccccCHHHhhccCCC
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---------------------LG-LPVFNTVAEAKAETKA  100 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i---------------------~G-~p~y~sl~dip~~~~v  100 (340)
                      +|.|+|. |.+|...+..|.+.|++++ .+|++... +.+                     .| +....+++++..  +.
T Consensus         2 kI~vIGl-G~~G~~lA~~La~~G~~V~-~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~--~a   77 (411)
T TIGR03026         2 KIAVIGL-GYVGLPLAALLADLGHEVT-GVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR--DA   77 (411)
T ss_pred             EEEEECC-CchhHHHHHHHHhcCCeEE-EEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh--hC
Confidence            4677799 9999999999999999855 55543310 000                     13 444556777554  58


Q ss_pred             cEEEEecChhh----------HHHHHHHHHHc-CCcEEEEecCCCChhhHHHHH
Q 019500          101 NASAIYVPPPF----------AAAAILEAMEA-ELDLVVCITEGIPQHDMVRVK  143 (340)
Q Consensus       101 Dlavi~vp~~~----------v~~~v~ea~~~-Gvk~vvi~t~Gf~e~~~~~l~  143 (340)
                      |++++++|...          +.++++...+. .-+.+|+..+.++....+++.
T Consensus        78 dvvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~  131 (411)
T TIGR03026        78 DVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVV  131 (411)
T ss_pred             CEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHH
Confidence            99999999653          55555555442 223456667776655444443

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=95.86  E-value=0.11  Score=51.92  Aligned_cols=69  Identities=19%  Similarity=0.117  Sum_probs=53.6

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAME  121 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~  121 (340)
                      -+|.|+|.+|.||....+.|.+. +++++ ++++..   +     ...++++...  +.|++++|+|.....+++++...
T Consensus         5 ~~I~IIGl~GliGgslA~alk~~~~~~V~-g~D~~d---~-----~~~~~~~~v~--~aDlVilavPv~~~~~~l~~l~~   73 (370)
T PRK08818          5 PVVGIVGSAGAYGRWLARFLRTRMQLEVI-GHDPAD---P-----GSLDPATLLQ--RADVLIFSAPIRHTAALIEEYVA   73 (370)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCEEE-EEcCCc---c-----ccCCHHHHhc--CCCEEEEeCCHHHHHHHHHHHhh
Confidence            35677799999999999999874 77755 788753   1     1224555554  58999999999999999999987


Q ss_pred             c
Q 019500          122 A  122 (340)
Q Consensus       122 ~  122 (340)
                      .
T Consensus        74 ~   74 (370)
T PRK08818         74 L   74 (370)
T ss_pred             h
Confidence            4

>PRK06392 homoserine dehydrogenase; Provisional

Probab=95.83  E-value=0.055  Score=53.00  Aligned_cols=106  Identities=15%  Similarity=0.166  Sum_probs=66.2

Q ss_pred             EEEEeCCCCCcchHHHHHHHH------c--CCeEEEeeCCCC-----CCcee---------cCcccc--c--CHHHhhcc
Q 019500           44 RVICQGITGKNGTFHTEQAIE------Y--GTKMVGGVTPKK-----GGTEH---------LGLPVF--N--TVAEAKAE   97 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~------~--G~~vv~~VnP~~-----~g~~i---------~G~p~y--~--sl~dip~~   97 (340)
                      +|+|+|+ |+.|+.+++.|.+      +  ++++++..|.+.     .|-.+         ..+..|  +  ++.++.+.
T Consensus         2 rVaIiGf-G~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~   80 (326)
T PRK06392          2 RISIIGL-GNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI   80 (326)
T ss_pred             EEEEECC-CHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence            6788899 9999999998776      2  456776544331     00000         012223  2  56777653


Q ss_pred             CCCcEEEEecChh----hHHHHHHHHHHcCCcEEEEecC-C-CChhhHHHHHHHHhccCCcEEE
Q 019500           98 TKANASAIYVPPP----FAAAAILEAMEAELDLVVCITE-G-IPQHDMVRVKAALNNQSKTRLV  155 (340)
Q Consensus        98 ~~vDlavi~vp~~----~v~~~v~ea~~~Gvk~vvi~t~-G-f~e~~~~~l~~~aar~~girvi  155 (340)
                       ++|++|.++|..    ...+.+++++++|++.+.  +. | ++ ....++.+.+ +++|.++.
T Consensus        81 -~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVT--aNKgalA-~~~~eL~~lA-~~~g~~~~  139 (326)
T PRK06392         81 -KPDVIVDVTPASKDGIREKNLYINAFEHGIDVVT--ANKSGLA-NHWHDIMDSA-SKNRRIIR  139 (326)
T ss_pred             -CCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEc--CCHHHHH-hhHHHHHHHH-HHcCCeEE
Confidence             689999999742    256778999999998632  32 2 22 2345666665 77777765

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=95.83  E-value=0.038  Score=54.32  Aligned_cols=93  Identities=18%  Similarity=0.102  Sum_probs=66.1

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHH--cC-CeEEEeeCCCCCCcee--cC--cccccCHHHhhccCCCcEEEEecChhhH
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIE--YG-TKMVGGVTPKKGGTEH--LG--LPVFNTVAEAKAETKANASAIYVPPPFA  112 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~--~G-~~vv~~VnP~~~g~~i--~G--~p~y~sl~dip~~~~vDlavi~vp~~~v  112 (340)
                      .+.++|+|+||||-.|....+.|.+  +. +++......+..|+.+  .|  +++. ++++..- .++|+++.++|....
T Consensus         2 ~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~-~~~Dvvf~a~p~~~s   79 (336)
T PRK08040          2 SEGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDW-SQAQLAFFVAGREAS   79 (336)
T ss_pred             CCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhc-cCCCEEEECCCHHHH
Confidence            3567888889999999999999998  43 3555444444445544  22  2222 4444421 158999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEecCCCC
Q 019500          113 AAAILEAMEAELDLVVCITEGIP  135 (340)
Q Consensus       113 ~~~v~ea~~~Gvk~vvi~t~Gf~  135 (340)
                      .+.+.++.++|++. |-.++.|.
T Consensus        80 ~~~~~~~~~~g~~V-IDlS~~fR  101 (336)
T PRK08040         80 AAYAEEATNAGCLV-IDSSGLFA  101 (336)
T ss_pred             HHHHHHHHHCCCEE-EECChHhc
Confidence            99999999999974 66777664

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=95.79  E-value=0.03  Score=55.02  Aligned_cols=81  Identities=17%  Similarity=0.134  Sum_probs=59.1

Q ss_pred             EEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCC--------------------c--eecCcccccCHHHhhccCCCcE
Q 019500           46 ICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG--------------------T--EHLGLPVFNTVAEAKAETKANA  102 (340)
Q Consensus        46 iVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g--------------------~--~i~G~p~y~sl~dip~~~~vDl  102 (340)
                      .|+|. |++|+.+++.+.+. +.++++..++....                    .  +-.|++++.+++++++  ++|+
T Consensus         2 aInG~-GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~--~vDi   78 (333)
T TIGR01546         2 GVNGY-GTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLE--KVDI   78 (333)
T ss_pred             EEECC-cHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhh--cCCE
Confidence            45688 88888888877653 56777544332200                    0  0124666778999986  5999


Q ss_pred             EEEecChhhHHHHHHHHHHcCCcEEEE
Q 019500          103 SAIYVPPPFAAAAILEAMEAELDLVVC  129 (340)
Q Consensus       103 avi~vp~~~v~~~v~ea~~~Gvk~vvi  129 (340)
                      ++.++|........+...+.|.|.+++
T Consensus        79 Vve~Tp~~~~~~na~~~~~~GakaVl~  105 (333)
T TIGR01546        79 VVDATPGGIGAKNKPLYEKAGVKAIFQ  105 (333)
T ss_pred             EEECCCCCCChhhHHHHHhCCcCEEEE
Confidence            999999999999999999999999654

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=95.76  E-value=0.033  Score=54.66  Aligned_cols=91  Identities=14%  Similarity=0.061  Sum_probs=60.8

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcC-CeEEEeeC-CCCCCceec---Ccccc-------c-----CHHHhhccCCCcEEEE
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYG-TKMVGGVT-PKKGGTEHL---GLPVF-------N-----TVAEAKAETKANASAI  105 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G-~~vv~~Vn-P~~~g~~i~---G~p~y-------~-----sl~dip~~~~vDlavi  105 (340)
                      ++|+|+|++|.+|+.+.+.+.+.. +++++.+. ....|+.+.   ....|       .     ++++-.. .++|+++.
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~DvVf~   79 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVAS-KDVDIVFS   79 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHh-ccCCEEEE
Confidence            367788999999999999888865 67776643 322233322   11111       1     1111111 26999999


Q ss_pred             ecChhhHHHHHHHHHHcCCcEEEEecCCCC
Q 019500          106 YVPPPFAAAAILEAMEAELDLVVCITEGIP  135 (340)
Q Consensus       106 ~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~  135 (340)
                      ++|.....+..+++.+.|++. |..++-|.
T Consensus        80 a~p~~~s~~~~~~~~~~G~~V-IDlsg~fR  108 (341)
T TIGR00978        80 ALPSEVAEEVEPKLAEAGKPV-FSNASNHR  108 (341)
T ss_pred             eCCHHHHHHHHHHHHHCCCEE-EECChhhc
Confidence            999999999999999999985 55666553

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=95.73  E-value=0.083  Score=50.67  Aligned_cols=84  Identities=21%  Similarity=0.177  Sum_probs=58.0

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeE-EEeeCCCCCCc---eecCcc-cc-cCH-HHhhccCCCcEEEEecChhhHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKM-VGGVTPKKGGT---EHLGLP-VF-NTV-AEAKAETKANASAIYVPPPFAAA  114 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~v-v~~VnP~~~g~---~i~G~p-~y-~sl-~dip~~~~vDlavi~vp~~~v~~  114 (340)
                      ..+|+|+|. |.||+..++.+.+.|+.+ +++.++.....   .-.|+. .+ .+. .+...  ..|++|++||.....+
T Consensus         3 ~~~v~IvG~-GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~--~aD~VivavPi~~~~~   79 (279)
T COG0287           3 SMKVGIVGL-GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAA--EADLVIVAVPIEATEE   79 (279)
T ss_pred             CcEEEEECC-chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcc--cCCEEEEeccHHHHHH
Confidence            456888897 999999999999999874 67888765211   113332 22 222 22221  4799999999999999


Q ss_pred             HHHHHHH-cCCcEEE
Q 019500          115 AILEAME-AELDLVV  128 (340)
Q Consensus       115 ~v~ea~~-~Gvk~vv  128 (340)
                      ++++... .....+|
T Consensus        80 ~l~~l~~~l~~g~iv   94 (279)
T COG0287          80 VLKELAPHLKKGAIV   94 (279)
T ss_pred             HHHHhcccCCCCCEE
Confidence            9999985 3444444

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=95.68  E-value=0.087  Score=50.19  Aligned_cols=113  Identities=17%  Similarity=0.235  Sum_probs=77.4

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcC-C--eEEEeeCCCCCCc----eecCcccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYG-T--KMVGGVTPKKGGT----EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G-~--~vv~~VnP~~~g~----~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      +|.++|+ |+||+.++..|++.| +  ..+...||+....    +-+|+....+-.++.+  +.|++++++.|....+++
T Consensus         3 ~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~--~advv~LavKPq~~~~vl   79 (266)
T COG0345           3 KIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVE--EADVVFLAVKPQDLEEVL   79 (266)
T ss_pred             eEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHh--hCCEEEEEeChHhHHHHH
Confidence            5667799 999999999999987 3  2454788876211    1345555666666665  489999999999999999


Q ss_pred             HHHHH-cCCcEEEEecCCCChhhHHHHHHHHhccCC-cEEEccCCCCccc
Q 019500          117 LEAME-AELDLVVCITEGIPQHDMVRVKAALNNQSK-TRLVGPNCPGVIK  164 (340)
Q Consensus       117 ~ea~~-~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~g-irviGPNc~Gi~~  164 (340)
                      .++.. ..=+.+|=+..|.+-+.++   ++. -... +|++ ||..-.+.
T Consensus        80 ~~l~~~~~~~lvISiaAGv~~~~l~---~~l-~~~~vvR~M-PNt~a~vg  124 (266)
T COG0345          80 SKLKPLTKDKLVISIAAGVSIETLE---RLL-GGLRVVRVM-PNTPALVG  124 (266)
T ss_pred             HHhhcccCCCEEEEEeCCCCHHHHH---HHc-CCCceEEeC-CChHHHHc
Confidence            99874 2334567678899755544   333 2233 4555 99654443

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=95.67  E-value=0.052  Score=53.97  Aligned_cols=117  Identities=12%  Similarity=0.057  Sum_probs=69.8

Q ss_pred             EEEEeCCCCCcchHHHHHHH-HcCCe--EEEeeCC-CCCCce--ecCcc-cccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAI-EYGTK--MVGGVTP-KKGGTE--HLGLP-VFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~-~~G~~--vv~~VnP-~~~g~~--i~G~p-~y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      +|+|+||+|-.|+...+.|. +..|.  .+.++.. +.+|+.  ..|.+ ...++++...-.++|+++.+.+.+...+..
T Consensus         2 ~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~~vDivffa~g~~~s~~~~   81 (366)
T TIGR01745         2 NVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDALKALDIIITCQGGDYTNEIY   81 (366)
T ss_pred             eEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEEcCcccccccCCCEEEEcCCHHHHHHHH
Confidence            46677999999999999888 44554  2224443 333332  22222 111232210112599999999999999999


Q ss_pred             HHHHHcCCcEEEE-ecCCCChh----------hHHHHHHHHhccCCcE-EEccCCCCc
Q 019500          117 LEAMEAELDLVVC-ITEGIPQH----------DMVRVKAALNNQSKTR-LVGPNCPGV  162 (340)
Q Consensus       117 ~ea~~~Gvk~vvi-~t~Gf~e~----------~~~~l~~~aar~~gir-viGPNc~Gi  162 (340)
                      ..+.++|.+.+|| -++-|.-+          .-+.+.+.  ++.|+. +..|||.-+
T Consensus        82 p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~--~~~gi~~ianPNCst~  137 (366)
T TIGR01745        82 PKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDG--LNNGIRTFVGGNCTVS  137 (366)
T ss_pred             HHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhH--HhCCcCeEECcCHHHH
Confidence            9999999865443 33334211          12223221  246775 788999543

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.63  E-value=0.044  Score=51.96  Aligned_cols=88  Identities=11%  Similarity=0.066  Sum_probs=54.9

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee----------------c-------------CcccccCHHHh
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH----------------L-------------GLPVFNTVAEA   94 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i----------------~-------------G~p~y~sl~di   94 (340)
                      +|.|+|+ |.||..++..+.+.|++++ .+|++.  +.+                .             ++....+++++
T Consensus         5 kI~VIG~-G~mG~~ia~~la~~g~~V~-~~d~~~--~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~   80 (282)
T PRK05808          5 KIGVIGA-GTMGNGIAQVCAVAGYDVV-MVDISD--AAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDL   80 (282)
T ss_pred             EEEEEcc-CHHHHHHHHHHHHCCCceE-EEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh
Confidence            5677799 9999999999999999855 445432  111                1             23334566654


Q ss_pred             hccCCCcEEEEecChhhH--HHHHHHHHHcC-CcEEE-EecCCCChhh
Q 019500           95 KAETKANASAIYVPPPFA--AAAILEAMEAE-LDLVV-CITEGIPQHD  138 (340)
Q Consensus        95 p~~~~vDlavi~vp~~~v--~~~v~ea~~~G-vk~vv-i~t~Gf~e~~  138 (340)
                      .   +.|++++++|++..  .+++++..+.- -..++ -.|+|++.++
T Consensus        81 ~---~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~  125 (282)
T PRK05808         81 K---DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITE  125 (282)
T ss_pred             c---cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence            3   58999999987555  56666655432 22333 3345665443

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.58  E-value=0.055  Score=51.98  Aligned_cols=113  Identities=16%  Similarity=0.313  Sum_probs=68.5

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee-----cCccc--ccCHHHhhccCCCcEEEEecChhhHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-----LGLPV--FNTVAEAKAETKANASAIYVPPPFAAA  114 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i-----~G~p~--y~sl~dip~~~~vDlavi~vp~~~v~~  114 (340)
                      ..+|+|+|+ |++|+.+++.+..+|.++. .+|++.  +..     .|...  +.++.+...  +.|+++.++|......
T Consensus       151 gk~v~IiG~-G~iG~avA~~L~~~G~~V~-v~~R~~--~~~~~~~~~g~~~~~~~~l~~~l~--~aDiVint~P~~ii~~  224 (287)
T TIGR02853       151 GSNVMVLGF-GRTGMTIARTFSALGARVF-VGARSS--ADLARITEMGLIPFPLNKLEEKVA--EIDIVINTIPALVLTA  224 (287)
T ss_pred             CCEEEEEcC-hHHHHHHHHHHHHCCCEEE-EEeCCH--HHHHHHHHCCCeeecHHHHHHHhc--cCCEEEECCChHHhCH
Confidence            346778899 9999999999999999754 667654  221     23332  234555554  5899999999765433


Q ss_pred             HHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEE-EccCCCCcccCC
Q 019500          115 AILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL-VGPNCPGVIKPG  166 (340)
Q Consensus       115 ~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girv-iGPNc~Gi~~p~  166 (340)
                      ..-+..+.+ ..++.+++.=...+.    +.+ ++.|++. +-|+-.|.+.|.
T Consensus       225 ~~l~~~k~~-aliIDlas~Pg~tdf----~~A-k~~G~~a~~~~glPg~~ap~  271 (287)
T TIGR02853       225 DVLSKLPKH-AVIIDLASKPGGTDF----EYA-KKRGIKALLAPGLPGIVAPK  271 (287)
T ss_pred             HHHhcCCCC-eEEEEeCcCCCCCCH----HHH-HHCCCEEEEeCCCCcccCch
Confidence            222233332 233444443223344    222 6788774 457777777664

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PLN02858 fructose-bisphosphate aldolase

Probab=95.57  E-value=0.063  Score=61.82  Aligned_cols=114  Identities=18%  Similarity=0.211  Sum_probs=72.9

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccCCCcEEEEecC-hhhHHHHHH-
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVP-PPFAAAAIL-  117 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~~vDlavi~vp-~~~v~~~v~-  117 (340)
                      .+|.++|. |+||..++++|.+.|+++. ..|+.... +.  -.|.....+..++.+  ..|++++++| ++.+.+++. 
T Consensus       325 ~~IGfIGl-G~MG~~mA~~L~~~G~~V~-v~dr~~~~~~~l~~~Ga~~~~s~~e~~~--~aDvVi~~V~~~~~v~~Vl~g  400 (1378)
T PLN02858        325 KRIGFIGL-GAMGFGMASHLLKSNFSVC-GYDVYKPTLVRFENAGGLAGNSPAEVAK--DVDVLVIMVANEVQAENVLFG  400 (1378)
T ss_pred             CeEEEECc-hHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEecCChHHHHHHHhc
Confidence            45677799 9999999999999999854 55654310 11  135556778888876  5899999999 666666652 


Q ss_pred             --HHHHc-CCcEEEEecCCCChhhHHHHHHHHhcc--CCcEEE-ccCCCC
Q 019500          118 --EAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQ--SKTRLV-GPNCPG  161 (340)
Q Consensus       118 --ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~--~girvi-GPNc~G  161 (340)
                        .+++. ....+||-.+-.+....+++.+.+ ++  .|++++ .|=+-|
T Consensus       401 ~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l-~~~g~g~~~lDAPVsGg  449 (1378)
T PLN02858        401 DLGAVSALPAGASIVLSSTVSPGFVIQLERRL-ENEGRDIKLVDAPVSGG  449 (1378)
T ss_pred             hhhHHhcCCCCCEEEECCCCCHHHHHHHHHHH-HhhCCCcEEEEccCCCC
Confidence              23332 122344445545555566666655 45  777765 454333

>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

Probab=95.52  E-value=0.061  Score=54.42  Aligned_cols=85  Identities=20%  Similarity=0.304  Sum_probs=63.6

Q ss_pred             eEEEEeCCCCCcchHHHHHHHH---cCCeEEEeeCCCCC-CceecCcccccCHHHhhc---cCCCcEEEEecChhh---H
Q 019500           43 TRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKKG-GTEHLGLPVFNTVAEAKA---ETKANASAIYVPPPF---A  112 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~---~G~~vv~~VnP~~~-g~~i~G~p~y~sl~dip~---~~~vDlavi~vp~~~---v  112 (340)
                      .+++|+|+ +..+..+.+.+.+   .||++++.++++.. +..+.|+|++.+++++++   ++++|-++++.|...   .
T Consensus       126 ~rvLIvGa-g~~a~~l~~~L~~~~~~g~~vvG~idd~~~~~~~i~g~pVlg~~~~l~~~i~~~~id~ViIa~p~~~~~~~  204 (445)
T TIGR03025       126 RRVLIVGT-GEAARELAAALSRNPDLGYRVVGFVDDRPSDRVEVAGLPVLGKLDDLVELVRAHRVDEVIIALPLSEEARI  204 (445)
T ss_pred             CcEEEEEC-CHHHHHHHHHHhhCccCCeEEEEEEeCCcccccccCCCcccCCHHHHHHHHHhCCCCEEEEecCcccHHHH
Confidence            35788899 7778888888765   37888877775432 246789999988776653   457999999988644   4


Q ss_pred             HHHHHHHHHcCCcEEE
Q 019500          113 AAAILEAMEAELDLVV  128 (340)
Q Consensus       113 ~~~v~ea~~~Gvk~vv  128 (340)
                      .+.+++|.+.|++..+
T Consensus       205 ~~ll~~~~~~gv~V~~  220 (445)
T TIGR03025       205 LELLLQLRDLGVDVRL  220 (445)
T ss_pred             HHHHHHHHhcCCEEEE
Confidence            5788999999998644

Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.

>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase

Probab=95.50  E-value=0.067  Score=54.22  Aligned_cols=84  Identities=19%  Similarity=0.276  Sum_probs=62.3

Q ss_pred             eEEEEeCCCCCcchHHHHHHHH---cCCeEEEeeCCC--CCCceecCcccccCHHHhhc---cCCCcEEEEecChh---h
Q 019500           43 TRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPK--KGGTEHLGLPVFNTVAEAKA---ETKANASAIYVPPP---F  111 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~---~G~~vv~~VnP~--~~g~~i~G~p~y~sl~dip~---~~~vDlavi~vp~~---~  111 (340)
                      .+|+|+|+ +..|..+.+.+.+   .||++++.++.+  ..+.. .|+|++.+++++++   ++++|.++++.|..   .
T Consensus       129 ~rvLIiGa-g~~~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~~-~gvpVlg~~~dl~~~i~~~~vd~ViIA~p~~~~~~  206 (451)
T TIGR03023       129 RRVLIVGA-GELGRRLAERLARNPELGYRVVGFFDDRPDARTGV-RGVPVLGKLDDLEELIREGEVDEVYIALPLAAEDR  206 (451)
T ss_pred             CcEEEEeC-CHHHHHHHHHHHhCccCCcEEEEEEeCCCcccccc-CCCCccCCHHHHHHHHHhcCCCEEEEeeCcccHHH
Confidence            35788899 7778888888765   378888777643  22234 89999988776653   46799999999874   4


Q ss_pred             HHHHHHHHHHcCCcEEE
Q 019500          112 AAAAILEAMEAELDLVV  128 (340)
Q Consensus       112 v~~~v~ea~~~Gvk~vv  128 (340)
                      ..+++++|-+.|++..+
T Consensus       207 ~~~ll~~~~~~gv~V~v  223 (451)
T TIGR03023       207 ILELLDALEDLTVDVRL  223 (451)
T ss_pred             HHHHHHHHHhcCCEEEE
Confidence            56788899999988644

Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.

>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional

Probab=95.49  E-value=0.079  Score=54.44  Aligned_cols=86  Identities=13%  Similarity=0.030  Sum_probs=61.8

Q ss_pred             EEEEeCCCCCcchHHHHHHHHc---CCeEEEeeCCCCCCceecCcccccCHHHhh---ccCCCcEEEEecChh---hHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGTEHLGLPVFNTVAEAK---AETKANASAIYVPPP---FAAA  114 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~---G~~vv~~VnP~~~g~~i~G~p~y~sl~dip---~~~~vDlavi~vp~~---~v~~  114 (340)
                      +++|+|+ |..|..+.+.+.+.   ||++++.++++..+.++.|+|++.+.+++.   .++.+|+ +++.|..   ...+
T Consensus       148 rvLIIGa-G~~a~~l~~~L~~~~~~g~~vVGfIDd~~~~~~i~gvPVlg~~d~l~~~~~~~~v~v-IIAip~~~~~~r~~  225 (476)
T PRK15204        148 KTIILGS-GQNARGAYSALQSEEMMGFDVIAFFDTDASDAEINMLPVIKDTEIIWDLNRTGDVHY-ILAYEYTELEKTHF  225 (476)
T ss_pred             eEEEEEC-CHHHHHHHHHHHhCccCCcEEEEEEcCCccccccCCCcccCCHHHHHHHHHhCCCcE-EEEeCcCcHHHHHH
Confidence            5778899 77788888888764   899888888654335689999998876552   2235675 7888843   4557


Q ss_pred             HHHHHHHcCCcEEEEec
Q 019500          115 AILEAMEAELDLVVCIT  131 (340)
Q Consensus       115 ~v~ea~~~Gvk~vvi~t  131 (340)
                      .+++|.+.|++.+.++.
T Consensus       226 il~~l~~~gv~~V~vIP  242 (476)
T PRK15204        226 WLRELSKHHCRSVTVVP  242 (476)
T ss_pred             HHHHHhhcCCeEEEEeC
Confidence            88999888987544333

>PRK06436 glycerate dehydrogenase; Provisional

Probab=95.49  E-value=0.16  Score=49.19  Aligned_cols=65  Identities=17%  Similarity=0.197  Sum_probs=48.6

Q ss_pred             cCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCc-ccccCHHHhhccCCCcEEEEecChhh
Q 019500           38 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGL-PVFNTVAEAKAETKANASAIYVPPPF  111 (340)
Q Consensus        38 f~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~-p~y~sl~dip~~~~vDlavi~vp~~~  111 (340)
                      +..++  |.|+|. |++|+.+++.+..+|++++ .+||..  .. .|. +.|.+++++..  +.|++++++|...
T Consensus       120 L~gkt--vgIiG~-G~IG~~vA~~l~afG~~V~-~~~r~~--~~-~~~~~~~~~l~ell~--~aDiv~~~lp~t~  185 (303)
T PRK06436        120 LYNKS--LGILGY-GGIGRRVALLAKAFGMNIY-AYTRSY--VN-DGISSIYMEPEDIMK--KSDFVLISLPLTD  185 (303)
T ss_pred             CCCCE--EEEECc-CHHHHHHHHHHHHCCCEEE-EECCCC--cc-cCcccccCCHHHHHh--hCCEEEECCCCCc
Confidence            34444  556699 9999999999888999876 778764  22 233 34789999986  4899999999643

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.45  E-value=0.07  Score=50.54  Aligned_cols=89  Identities=16%  Similarity=0.147  Sum_probs=59.9

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee--cCcc-----------cccCHHHhhccCCCcEEEEecCh
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLP-----------VFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i--~G~p-----------~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      +|.|+|+ |.+|...+..|.+.|+++. .++++..- +.+  .|+.           ...+.+++ +  +.|++++++|+
T Consensus         2 ~I~IiG~-G~~G~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~~d~vila~k~   76 (304)
T PRK06522          2 KIAILGA-GAIGGLFGAALAQAGHDVT-LVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--PQDLVILAVKA   76 (304)
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCeEE-EEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--CCCEEEEeccc
Confidence            5778899 9999999999998898855 44432100 111  2332           23455554 3  58999999999


Q ss_pred             hhHHHHHHHHHHc-CC-cEEEEecCCCChh
Q 019500          110 PFAAAAILEAMEA-EL-DLVVCITEGIPQH  137 (340)
Q Consensus       110 ~~v~~~v~ea~~~-Gv-k~vvi~t~Gf~e~  137 (340)
                      ..+.+++++.... +- ..++.++.|+...
T Consensus        77 ~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~  106 (304)
T PRK06522         77 YQLPAALPSLAPLLGPDTPVLFLQNGVGHL  106 (304)
T ss_pred             ccHHHHHHHHhhhcCCCCEEEEecCCCCcH
Confidence            9998888887753 32 2466778898633

>PRK08605 D-lactate dehydrogenase; Validated

Probab=95.43  E-value=0.085  Score=51.65  Aligned_cols=98  Identities=18%  Similarity=0.193  Sum_probs=59.9

Q ss_pred             eEEEEeCCCCCcchHHHHHH-HHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHH--H--
Q 019500           43 TRVICQGITGKNGTFHTEQA-IEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI--L--  117 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l-~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v--~--  117 (340)
                      .+|.|+|. |++|+.+++.+ ..+|.+++ ..||......-.++....+++++..  ..|++++++|.......+  +  
T Consensus       147 ~~VgIIG~-G~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~l~ell~--~aDvIvl~lP~t~~t~~li~~~~  222 (332)
T PRK08605        147 LKVAVIGT-GRIGLAVAKIFAKGYGSDVV-AYDPFPNAKAATYVDYKDTIEEAVE--GADIVTLHMPATKYNHYLFNADL  222 (332)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCEEE-EECCCccHhHHhhccccCCHHHHHH--hCCEEEEeCCCCcchhhhcCHHH
Confidence            35777799 99999999998 45677765 6787642111123344458999876  489999999976544443  1  


Q ss_pred             -HHHHcCCcEEEEecCCCChhhHHHHHHHH
Q 019500          118 -EAMEAELDLVVCITEGIPQHDMVRVKAAL  146 (340)
Q Consensus       118 -ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~a  146 (340)
                       +..+.|. .+|..+.|.. .+..++.+++
T Consensus       223 l~~mk~ga-ilIN~sRG~~-vd~~aL~~aL  250 (332)
T PRK08605        223 FKHFKKGA-VFVNCARGSL-VDTKALLDAL  250 (332)
T ss_pred             HhcCCCCc-EEEECCCCcc-cCHHHHHHHH
Confidence             1223332 3455555643 3344455544

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=95.41  E-value=0.089  Score=52.63  Aligned_cols=62  Identities=16%  Similarity=0.149  Sum_probs=47.7

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      ..|.|+|. |++|+.+++.+..+|++++ ..||..  ....+..-|.+++++..  ..|++++.+|-.
T Consensus       117 ktvGIIG~-G~IG~~va~~l~a~G~~V~-~~Dp~~--~~~~~~~~~~~l~ell~--~aDiV~lh~Plt  178 (381)
T PRK00257        117 RTYGVVGA-GHVGGRLVRVLRGLGWKVL-VCDPPR--QEAEGDGDFVSLERILE--ECDVISLHTPLT  178 (381)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCEEE-EECCcc--cccccCccccCHHHHHh--hCCEEEEeCcCC
Confidence            34667799 9999999999999999976 678754  22223334678999986  489999999953

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=95.38  E-value=0.03  Score=57.08  Aligned_cols=156  Identities=17%  Similarity=0.206  Sum_probs=92.3

Q ss_pred             cccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCC-----CCCcee---cCcccccCHHHhhccCCCcEEEEec
Q 019500           36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK-----KGGTEH---LGLPVFNTVAEAKAETKANASAIYV  107 (340)
Q Consensus        36 ~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~-----~~g~~i---~G~p~y~sl~dip~~~~vDlavi~v  107 (340)
                      ..|..+.+  +|+|. |..|+.++.+|+..|.++++++-+.     ..+.+.   .|.++ .+++|+..  ..|++++.+
T Consensus        32 ~~LkgKtI--aIIGy-GSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~--~ADvVviLl  105 (487)
T PRK05225         32 SYLKGKKI--VIVGC-GAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIP--QADLVINLT  105 (487)
T ss_pred             HHhCCCEE--EEEcc-CHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHH--hCCEEEEcC
Confidence            34555554  55599 9999999999999999977665543     111122   57766 46888765  489999999


Q ss_pred             ChhhHHHHHHHHHHcC--CcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCCCCCCCcEEE
Q 019500          108 PPPFAAAAILEAMEAE--LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGI  185 (340)
Q Consensus       108 p~~~v~~~v~ea~~~G--vk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~~~~~~~~~~~~~~~G~val  185 (340)
                      |... ...+-+-+...  -...+.|+.||.-.... + . ..+.-.+-++-|-|+|-..-.-..-++     --|.-||+
T Consensus       106 PDt~-q~~v~~~i~p~LK~Ga~L~fsHGFni~~~~-i-~-~~~dvdVimvAPKgpG~~vR~~y~~G~-----Gvp~l~AV  176 (487)
T PRK05225        106 PDKQ-HSDVVRAVQPLMKQGAALGYSHGFNIVEVG-E-Q-IRKDITVVMVAPKCPGTEVREEYKRGF-----GVPTLIAV  176 (487)
T ss_pred             ChHH-HHHHHHHHHhhCCCCCEEEecCCceeeeCc-e-e-CCCCCcEEEECCCCCCchHHHHHhcCC-----CceEEEEE
Confidence            9996 44444444443  34567899999743211 0 0 113445678899998854321000111     23455777


Q ss_pred             E---ecChHHHHHHHHHHHhCCCC
Q 019500          186 V---SRSGTLTYEAVFQTTAVGLG  206 (340)
Q Consensus       186 v---SQSG~l~~~~~~~~~~~giG  206 (340)
                      -   =-||.-.--.+.|+..-|-+
T Consensus       177 ~~~qD~~g~a~~~ala~a~~iG~~  200 (487)
T PRK05225        177 HPENDPKGEGMAIAKAWAAATGGH  200 (487)
T ss_pred             eecCCCCchHHHHHHHHHHHhCCC
Confidence            6   33554333344565543433

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=95.35  E-value=0.19  Score=48.89  Aligned_cols=68  Identities=10%  Similarity=0.081  Sum_probs=48.6

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcc---cccCHHHhhccCCCcEEEEecChh-hHHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLP---VFNTVAEAKAETKANASAIYVPPP-FAAAAI  116 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p---~y~sl~dip~~~~vDlavi~vp~~-~v~~~v  116 (340)
                      .+|.|+|. |++|+.+++.+..+|++++ .+||..  +...+..   -+.+++++..  +.|++++++|-. ....++
T Consensus       137 ~tvgIvG~-G~IG~~vA~~l~afG~~V~-~~~~~~--~~~~~~~~~~~~~~l~e~l~--~aDvvv~~lPlt~~T~~li  208 (312)
T PRK15469        137 FTIGILGA-GVLGSKVAQSLQTWGFPLR-CWSRSR--KSWPGVQSFAGREELSAFLS--QTRVLINLLPNTPETVGII  208 (312)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCC--CCCCCceeecccccHHHHHh--cCCEEEECCCCCHHHHHHh
Confidence            35677799 9999999999999999866 677654  2222222   2457888886  589999999953 334444

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.34  E-value=0.028  Score=53.52  Aligned_cols=91  Identities=16%  Similarity=0.069  Sum_probs=54.6

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee--------------------------cCcccccCHHHhhc
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--------------------------LGLPVFNTVAEAKA   96 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i--------------------------~G~p~y~sl~dip~   96 (340)
                      +|.|+|+ |.||..++..+.+.|++++ .+|++... +..                          ..+....++++...
T Consensus         3 ~V~VIG~-G~mG~~iA~~la~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   80 (288)
T PRK09260          3 KLVVVGA-GVMGRGIAYVFAVSGFQTT-LVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA   80 (288)
T ss_pred             EEEEECc-cHHHHHHHHHHHhCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence            4667799 9999999999999999854 44443200 010                          01234456766655


Q ss_pred             cCCCcEEEEecChhhHH--HHHHHHHHcCC-cEEE-EecCCCChhh
Q 019500           97 ETKANASAIYVPPPFAA--AAILEAMEAEL-DLVV-CITEGIPQHD  138 (340)
Q Consensus        97 ~~~vDlavi~vp~~~v~--~~v~ea~~~Gv-k~vv-i~t~Gf~e~~  138 (340)
                        +.|+++.++|.+...  .++.++.+.-- ..++ +-++.++.++
T Consensus        81 --~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~  124 (288)
T PRK09260         81 --DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTE  124 (288)
T ss_pred             --CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH
Confidence              589999999987632  34444333222 2222 3456666544

>PRK07574 formate dehydrogenase; Provisional

Probab=95.33  E-value=0.16  Score=50.98  Aligned_cols=63  Identities=16%  Similarity=0.150  Sum_probs=48.9

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc---eecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~---~i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      .+|.|+|. |++|+.+++.+..+|++++ ..||.....   .-.|+..|.+++++..  ..|++++++|-
T Consensus       193 ktVGIvG~-G~IG~~vA~~l~~fG~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~lPl  258 (385)
T PRK07574        193 MTVGIVGA-GRIGLAVLRRLKPFDVKLH-YTDRHRLPEEVEQELGLTYHVSFDSLVS--VCDVVTIHCPL  258 (385)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCCCCchhhHhhcCceecCCHHHHhh--cCCEEEEcCCC
Confidence            35677799 9999999999999999876 677653111   1346666789999986  58999999995

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=95.32  E-value=0.077  Score=51.96  Aligned_cols=89  Identities=16%  Similarity=0.073  Sum_probs=62.5

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcC----CeEEEeeCCCCC------------------------Cc--eecC--cccc--c
Q 019500           44 RVICQGITGKNGTFHTEQAIEYG----TKMVGGVTPKKG------------------------GT--EHLG--LPVF--N   89 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G----~~vv~~VnP~~~------------------------g~--~i~G--~p~y--~   89 (340)
                      +|.|+|+ |++|+.+.+.+.+.+    +++++ +|.-..                        |+  .+.|  ++++  +
T Consensus         1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vva-Ind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~   78 (325)
T TIGR01532         1 RVAINGF-GRIGRNVLRALYESGERLGIEVVA-LNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSP   78 (325)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEE-EecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcC
Confidence            3667799 999999999988753    77774 443110                        01  0223  3344  2


Q ss_pred             CHHHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCC
Q 019500           90 TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIP  135 (340)
Q Consensus        90 sl~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~  135 (340)
                      +++++|= +.++|+++.|++.....+.+..++++|.+.++ ++.-+.
T Consensus        79 ~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~-~SaP~~  124 (325)
T TIGR01532        79 TPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVL-FSHPGA  124 (325)
T ss_pred             ChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEE-ecCCCc
Confidence            6777773 34799999999999999999999999998865 454443

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=95.29  E-value=0.1  Score=50.72  Aligned_cols=207  Identities=13%  Similarity=0.099  Sum_probs=112.2

Q ss_pred             EEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHHc
Q 019500           44 RVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEA  122 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~  122 (340)
                      +|.|+|+||-.|..+.+.|.++ .+++++....+.    ..   . .+.+++.+  ++|++++++|.+...+.+.++.+.
T Consensus         3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~----~~---~-~~~~~~~~--~~D~vFlalp~~~s~~~~~~~~~~   72 (310)
T TIGR01851         3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR----KD---A-AERAKLLN--AADVAILCLPDDAAREAVSLVDNP   72 (310)
T ss_pred             eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc----cC---c-CCHhHhhc--CCCEEEECCCHHHHHHHHHHHHhC
Confidence            5778899999999999999987 456664432221    10   0 13445544  599999999999999999999898


Q ss_pred             CCcEEEEecCCCChhh-----HHHH----HHHHhccCCcEEEccCCCCcccCCCcccccCCC---CCC-CCCcEEEEecC
Q 019500          123 ELDLVVCITEGIPQHD-----MVRV----KAALNNQSKTRLVGPNCPGVIKPGECKIGIMPG---YIH-KPGRIGIVSRS  189 (340)
Q Consensus       123 Gvk~vvi~t~Gf~e~~-----~~~l----~~~aar~~girviGPNc~Gi~~p~~~~~~~~~~---~~~-~~G~valvSQS  189 (340)
                      |++. |-+++.|.-++     .-++    .+.+ ++. -.|--|+|.=...-    +...|-   ... +...+.+-+-|
T Consensus        73 g~~V-IDlSadfRl~~~~~yglPEln~~~~~~i-~~a-~lIAnPgC~aTa~~----LaL~PL~~~~li~~~~~~~~~a~S  145 (310)
T TIGR01851        73 NTCI-IDASTAYRTADDWAYGFPELAPGQREKI-RNS-KRIANPGCYPTGFI----ALMRPLVEAGILPADFPITINAVS  145 (310)
T ss_pred             CCEE-EECChHHhCCCCCeEEccccCHHHHHhh-ccC-CEEECCCCHHHHHH----HHHHHHHHcCCccccceEEEEecc
Confidence            8874 66776653221     1111    1111 222 26778898532210    111110   001 22247777777


Q ss_pred             h--HHHHHHHHHHHhCCCC------ceEEeecCCCCCCCCCHHHHHHHhhcC----------CCccEEE--EEEcc---C
Q 019500          190 G--TLTYEAVFQTTAVGLG------QSTCVGIGGDPFNGTNFVDCVTKFIAD----------PQTEGII--LIGEI---G  246 (340)
Q Consensus       190 G--~l~~~~~~~~~~~giG------~S~~vs~Gn~a~~dv~~~d~l~~l~~D----------p~T~~I~--ly~E~---~  246 (340)
                      |  +-+....+...+ ..+      --+..+++-.   ---..|+.+++...          |-+|.|+  +|++.   -
T Consensus       146 G~SGAGr~~~~~l~~-q~~~~e~~~~~~~Y~~~~~---HrH~pEi~q~l~~~~~v~FtPhl~p~~RGil~Ti~~~l~~~~  221 (310)
T TIGR01851       146 GYSGGGKAMIADYEQ-GSADNPSLQPFRIYGLALT---HKHLPEMRVHSGLALPPIFTPAVGNFAQGMAVTIPLHLQTLA  221 (310)
T ss_pred             ccCccChhhhHHhhh-cccchhhccCceeccCCCC---CCcHHHHHHHhCCCCCEEEEeEEccccCcEEEEEEEEeccCC
Confidence            6  122222222211 111      1224445411   24567888887542          3445553  55553   1


Q ss_pred             -CCcHHHHHHHHHHhCCCCCEEEEEe
Q 019500          247 -GTAEEDAAALIKESGTEKPIVAFIA  271 (340)
Q Consensus       247 -g~~~~~~~~f~~a~r~~KPVvvlk~  271 (340)
                       +...++..+.++..-++.|.|=+.+
T Consensus       222 ~~~~~~~~~~~~~~~Y~~epfVrv~~  247 (310)
T TIGR01851       222 SKVSPADIHAALADYYQGEQFVRVAP  247 (310)
T ss_pred             CCCCHHHHHHHHHHHHCCCCcEEEec
Confidence             1123455555554447888886653

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP

Probab=95.18  E-value=0.097  Score=53.13  Aligned_cols=83  Identities=19%  Similarity=0.212  Sum_probs=60.3

Q ss_pred             EEEEeCCCCCcchHHHHHHHH---cCCeEEEeeCCC--CCCceecCcccccCHHHhh---ccCCCcEEEEecCh---hhH
Q 019500           44 RVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPK--KGGTEHLGLPVFNTVAEAK---AETKANASAIYVPP---PFA  112 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~---~G~~vv~~VnP~--~~g~~i~G~p~y~sl~dip---~~~~vDlavi~vp~---~~v  112 (340)
                      +++|+|+ |..|..+.+.+.+   .||++++.++++  ..+..+.|+|++.+ +++.   .++++|.++++.|.   +..
T Consensus       127 rvlIiGa-g~~~~~l~~~l~~~~~~g~~vvGfidd~~~~~~~~i~g~pVlg~-~~l~~~i~~~~id~ViIAip~~~~~~~  204 (456)
T TIGR03022       127 PAVIIGA-GQNAAILYRALQSNPQLGLRPLAVVDTDPAASGRLLTGLPVVGA-DDALRLYARTRYAYVIVAMPGTQAEDM  204 (456)
T ss_pred             eEEEEeC-CHHHHHHHHHHhhCccCCcEEEEEEeCCccccccccCCCcccCh-hHHHHHHHhCCCCEEEEecCCccHHHH
Confidence            5788899 7778888887764   478888777654  22356889999976 5543   33579999999983   456


Q ss_pred             HHHHHHHHHcCCcEEE
Q 019500          113 AAAILEAMEAELDLVV  128 (340)
Q Consensus       113 ~~~v~ea~~~Gvk~vv  128 (340)
                      .+.+++|.+.|+..+.
T Consensus       205 ~~ll~~l~~~~v~~V~  220 (456)
T TIGR03022       205 ARLVRKLGALHFRNVL  220 (456)
T ss_pred             HHHHHHHHhCCCeEEE
Confidence            6788889888884433

This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.16  E-value=0.12  Score=49.67  Aligned_cols=88  Identities=19%  Similarity=0.218  Sum_probs=54.6

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee-------cC--------------cccccCHHHhhccCCCc
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH-------LG--------------LPVFNTVAEAKAETKAN  101 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i-------~G--------------~p~y~sl~dip~~~~vD  101 (340)
                      +|.|+|+ |.||..++..+.+.|++++ .++++... +..       .|              +....++++..+  +.|
T Consensus         6 ~I~vIGa-G~mG~~iA~~l~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~aD   81 (311)
T PRK06130          6 NLAIIGA-GTMGSGIAALFARKGLQVV-LIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVS--GAD   81 (311)
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhc--cCC
Confidence            5677799 9999999999999999855 55553310 000       11              123356666554  589


Q ss_pred             EEEEecChhh--HHHHHHHHHHc-CCcEEE-EecCCCC
Q 019500          102 ASAIYVPPPF--AAAAILEAMEA-ELDLVV-CITEGIP  135 (340)
Q Consensus       102 lavi~vp~~~--v~~~v~ea~~~-Gvk~vv-i~t~Gf~  135 (340)
                      ++++++|++.  ..+++.+.... .-+.++ ..|+|.+
T Consensus        82 lVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~  119 (311)
T PRK06130         82 LVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLP  119 (311)
T ss_pred             EEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCC
Confidence            9999999874  45566665442 122233 3556775

>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional

Probab=95.15  E-value=0.45  Score=48.31  Aligned_cols=121  Identities=16%  Similarity=0.250  Sum_probs=86.8

Q ss_pred             CCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCc-HHHHHHHH
Q 019500          179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTA-EEDAAALI  257 (340)
Q Consensus       179 ~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~-~~~~~~f~  257 (340)
                      ..|+|+.+.--++++.+.+|.....|--...|.-+|+.+ +.-.+.+.++-+..||+.|+|++=+=++=.. ..-+..++
T Consensus       290 ldG~Ig~~vnGaGlamaTmD~i~~~Gg~pANFlD~GG~a-~~~~v~~a~~ii~~d~~vk~iliNIfGGI~~cd~iA~gii  368 (422)
T PLN00124        290 LDGEIGCMVNGAGLAMATMDIIKLHGGSPANFLDVGGNA-SEQQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIV  368 (422)
T ss_pred             CCCcEEEEecCchHHHHHHHHHHHcCCCcceeeecCCCC-CHHHHHHHHHHHhcCCCCcEEEEEecCCccchHHHHHHHH
Confidence            569999999999999999999999998889999999886 3567788899999999999999832221000 11223344


Q ss_pred             HHhC---CCCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcC--CeecCCHHHHHHHH
Q 019500          258 KESG---TEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAG--VTVVESPAKIGAAM  329 (340)
Q Consensus       258 ~a~r---~~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaG--vv~v~~~~el~~~~  329 (340)
                      ++++   .++|||+=-.|...                             +.-...|+..|  +..++|++|-...+
T Consensus       369 ~a~~~~~~~~pivvRl~Gtn~-----------------------------~~g~~~l~~~~~~~~~~~~l~~A~~~~  416 (422)
T PLN00124        369 NAAKQVGLKVPLVVRLEGTNV-----------------------------DQGKRILKESGMTLITAEDLDDAAEKA  416 (422)
T ss_pred             HHHHhcCCCCcEEEEcCCCCH-----------------------------HHHHHHHHhCCCCeEEcCCHHHHHHHH
Confidence            4443   68999885555322                             33467788888  56667666655444

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=95.11  E-value=0.15  Score=49.95  Aligned_cols=63  Identities=19%  Similarity=0.202  Sum_probs=46.2

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhh
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF  111 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~  111 (340)
                      +|.|+|. |++|+.+++.+..+|++++ ..+|... ..........+++++.+  ..|++++++|...
T Consensus       148 ~VgIIG~-G~IG~~vA~~L~~~G~~V~-~~d~~~~-~~~~~~~~~~~l~ell~--~aDiVil~lP~t~  210 (330)
T PRK12480        148 TVAIIGT-GRIGAATAKIYAGFGATIT-AYDAYPN-KDLDFLTYKDSVKEAIK--DADIISLHVPANK  210 (330)
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCEEE-EEeCChh-HhhhhhhccCCHHHHHh--cCCEEEEeCCCcH
Confidence            5677799 9999999999999999866 5666541 11112333358999887  5899999999653

>CHL00194 ycf39 Ycf39; Provisional

Probab=95.10  E-value=0.089  Score=50.49  Aligned_cols=86  Identities=19%  Similarity=0.150  Sum_probs=56.8

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeC-CCCCCc--eecCcccc-------cCHHHhhccCCCcEEEEecChh---
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT--EHLGLPVF-------NTVAEAKAETKANASAIYVPPP---  110 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~Vn-P~~~g~--~i~G~p~y-------~sl~dip~~~~vDlavi~vp~~---  110 (340)
                      +|+|.|+||..|+.+++.|.+.|+++.+.+. +... .  .-.|+.++       .++.++.+  ++|+++-+++..   
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~-~~l~~~~v~~v~~Dl~d~~~l~~al~--g~d~Vi~~~~~~~~~   78 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA-SFLKEWGAELVYGDLSLPETLPPSFK--GVTAIIDASTSRPSD   78 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh-hhHhhcCCEEEECCCCCHHHHHHHHC--CCCEEEECCCCCCCC
Confidence            5788999999999999999999999775543 2210 1  11233322       23444444  589988765421   


Q ss_pred             ----------hHHHHHHHHHHcCCcEEEEecC
Q 019500          111 ----------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       111 ----------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                                ....+++.|.+.|++.+|.+++
T Consensus        79 ~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss  110 (317)
T CHL00194         79 LYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI  110 (317)
T ss_pred             ccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence                      2356778888899998776555

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.04  E-value=0.13  Score=46.73  Aligned_cols=112  Identities=18%  Similarity=0.186  Sum_probs=64.0

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-c---eecCcccccCHHHhhccCCCcEEEEecChh-hHHHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAI  116 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~-~v~~~v  116 (340)
                      ..+|+|+|. |++|+.+++.|.+.|.+++ ..|.+... .   +-.|....++ +++... ++|+.+-+.... ...+. 
T Consensus        28 gk~v~I~G~-G~vG~~~A~~L~~~G~~Vv-v~D~~~~~~~~~~~~~g~~~v~~-~~l~~~-~~Dv~vp~A~~~~I~~~~-  102 (200)
T cd01075          28 GKTVAVQGL-GKVGYKLAEHLLEEGAKLI-VADINEEAVARAAELFGATVVAP-EEIYSV-DADVFAPCALGGVINDDT-  102 (200)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEcCCHHHHHHHHHHcCCEEEcc-hhhccc-cCCEEEecccccccCHHH-
Confidence            345788899 8999999999999999976 56654310 1   1124444433 455442 589988554332 22222 


Q ss_pred             HHHHHcCCcEEEEecCC-CChhhHHHHHHHHhccCCcEEE---ccCCCCccc
Q 019500          117 LEAMEAELDLVVCITEG-IPQHDMVRVKAALNNQSKTRLV---GPNCPGVIK  164 (340)
Q Consensus       117 ~ea~~~Gvk~vvi~t~G-f~e~~~~~l~~~aar~~girvi---GPNc~Gi~~  164 (340)
                        +.+.+.+.++-.+.+ +.+.+..   +.+ ++.|+.++   +-|+-|+++
T Consensus       103 --~~~l~~~~v~~~AN~~~~~~~~~---~~L-~~~Gi~~~Pd~~~NaGGv~~  148 (200)
T cd01075         103 --IPQLKAKAIAGAANNQLADPRHG---QML-HERGILYAPDYVVNAGGLIN  148 (200)
T ss_pred             --HHHcCCCEEEECCcCccCCHhHH---HHH-HHCCCEEeCceeeeCcCcee
Confidence              234467765533333 2212222   223 67898885   336666665

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=95.01  E-value=0.042  Score=46.81  Aligned_cols=107  Identities=12%  Similarity=0.072  Sum_probs=61.6

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCc----ccccCHHHhhccCCCcEEEEecChhhH-
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGL----PVFNTVAEAKAETKANASAIYVPPPFA-  112 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~---i~G~----p~y~sl~dip~~~~vDlavi~vp~~~v-  112 (340)
                      ..+|+|+|+ |.+|..+++.+.+.|...+..+|++... ++   ..+.    ..+.+..++.+  ++|+++.++|+... 
T Consensus        19 ~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Dvvi~~~~~~~~~   95 (155)
T cd01065          19 GKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLA--EADLIINTTPVGMKP   95 (155)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccc--cCCEEEeCcCCCCCC
Confidence            446778899 8999999999998864334466665310 11   1122    13456666544  59999999999875 


Q ss_pred             -H--HHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          113 -A--AAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       113 -~--~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                       .  .....+++.|. .++-+++ .++..  .+.+.+ ++.|++++.
T Consensus        96 ~~~~~~~~~~~~~~~-~v~D~~~-~~~~~--~l~~~~-~~~g~~~v~  137 (155)
T cd01065          96 GDELPLPPSLLKPGG-VVYDVVY-NPLET--PLLKEA-RALGAKTID  137 (155)
T ss_pred             CCCCCCCHHHcCCCC-EEEEcCc-CCCCC--HHHHHH-HHCCCceeC
Confidence             1  12233444443 2233332 23322  454554 677777663

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=94.96  E-value=0.15  Score=51.07  Aligned_cols=61  Identities=18%  Similarity=0.199  Sum_probs=46.4

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      ..|.|+|. |++|+.+++.+..+|++++ ..||..  .+......|.+++++..  ..|++++.+|-
T Consensus       117 ktvGIIG~-G~IG~~vA~~l~a~G~~V~-~~dp~~--~~~~~~~~~~~L~ell~--~sDiI~lh~PL  177 (378)
T PRK15438        117 RTVGIVGV-GNVGRRLQARLEALGIKTL-LCDPPR--ADRGDEGDFRSLDELVQ--EADILTFHTPL  177 (378)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCcc--cccccccccCCHHHHHh--hCCEEEEeCCC
Confidence            34666799 9999999999999999977 678754  22111124679999986  48999999984

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=94.96  E-value=0.14  Score=48.17  Aligned_cols=116  Identities=16%  Similarity=0.144  Sum_probs=77.1

Q ss_pred             EEEeCCCCCcchHHHHHHHHcCCe-EEEeeCCCCCCc-eecCcccccCHHHhhcc-CCCcEEEEecChh-hHHHHHHHHH
Q 019500           45 VICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGT-EHLGLPVFNTVAEAKAE-TKANASAIYVPPP-FAAAAILEAM  120 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~G~~-vv~~VnP~~~g~-~i~G~p~y~sl~dip~~-~~vDlavi~vp~~-~v~~~v~ea~  120 (340)
                      +-++|. ||||..+.+++++.|.+ +.|-+||..-.+ .-.|.+.-.|++++..+ ..|-.+-+.+|+. .+..++++..
T Consensus         3 iGmiGL-GrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~la   81 (300)
T COG1023           3 IGMIGL-GRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDLA   81 (300)
T ss_pred             ceeecc-chhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHHH
Confidence            446698 99999999999999999 556688865211 13566666787777654 3578999999997 7777888777


Q ss_pred             HcCCcEEEEecCCCCh-hhHHHHHHHHhccCCcEEEccCCCCc
Q 019500          121 EAELDLVVCITEGIPQ-HDMVRVKAALNNQSKTRLVGPNCPGV  162 (340)
Q Consensus       121 ~~Gvk~vvi~t~Gf~e-~~~~~l~~~aar~~girviGPNc~Gi  162 (340)
                      ..=-+.=+++-.|-+. .|..+..+.+ ++.|+.++--.+-|=
T Consensus        82 ~~L~~GDivIDGGNS~y~Ds~rr~~~l-~~kgi~flD~GTSGG  123 (300)
T COG1023          82 PLLSAGDIVIDGGNSNYKDSLRRAKLL-AEKGIHFLDVGTSGG  123 (300)
T ss_pred             hhcCCCCEEEECCccchHHHHHHHHHH-HhcCCeEEeccCCCC
Confidence            6533332445666442 2322222333 578999886666553

>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional

Probab=94.91  E-value=0.12  Score=53.00  Aligned_cols=82  Identities=12%  Similarity=0.048  Sum_probs=59.3

Q ss_pred             EEEEeCCCCCcchHHHHHHHHc---CCeEEEeeCCCCCCceecCcccccCHHHhh---ccCCCcEEEEecCh---hhHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGTEHLGLPVFNTVAEAK---AETKANASAIYVPP---PFAAA  114 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~---G~~vv~~VnP~~~g~~i~G~p~y~sl~dip---~~~~vDlavi~vp~---~~v~~  114 (340)
                      +|+|+|+ |..|..+.+.+.+.   ||++++.++.+.  ..-.++|++.+++|++   .++++|-++++.|.   +...+
T Consensus       145 rVLIvGa-G~~g~~l~~~L~~~~~~g~~vVGfiDdd~--~~g~~VpvlG~~~dL~~~v~~~~IdeViIAip~~~~~~l~e  221 (463)
T PRK10124        145 MVAVAGD-LPAGQMLLESFRNEPWLGFEVVGVYHDPK--PGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMSMCDGARVKK  221 (463)
T ss_pred             cEEEEEC-CHHHHHHHHHHhcCccCCeEEEEEEeCCc--cccCCCCcCCCHHHHHHHHHhCCCCEEEEeCCCcchHHHHH
Confidence            5788899 77888888888763   788888787543  1112345588877664   34679999999985   44567


Q ss_pred             HHHHHHHcCCcEEE
Q 019500          115 AILEAMEAELDLVV  128 (340)
Q Consensus       115 ~v~ea~~~Gvk~vv  128 (340)
                      ++++|.+.+++..+
T Consensus       222 ll~~~~~~~v~V~i  235 (463)
T PRK10124        222 LVRQLADTTCSVLL  235 (463)
T ss_pred             HHHHHHHcCCeEEE
Confidence            88899999998644

>PLN02858 fructose-bisphosphate aldolase

Probab=94.89  E-value=0.15  Score=58.84  Aligned_cols=108  Identities=19%  Similarity=0.123  Sum_probs=70.1

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc-e--ecCcccccCHHHhhccCCCcEEEEecChhhHHHHH---
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E--HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI---  116 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~-~--i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v---  116 (340)
                      .+|.++|. |+||..++++|.+.||++. ..|...... .  -.|.....|..|+.+  ..|++++++|.....+.+   
T Consensus         5 ~~IGfIGL-G~MG~~mA~~L~~~G~~v~-v~dr~~~~~~~l~~~Ga~~~~s~~e~a~--~advVi~~l~~~~~v~~V~~g   80 (1378)
T PLN02858          5 GVVGFVGL-DSLSFELASSLLRSGFKVQ-AFEISTPLMEKFCELGGHRCDSPAEAAK--DAAALVVVLSHPDQVDDVFFG   80 (1378)
T ss_pred             CeEEEEch-hHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEEcCChHHHHHHHhc
Confidence            45667799 9999999999999999844 444433101 1  247778899999987  589999999986554444   


Q ss_pred             -HHHHHcC-CcEEEEecCCCChhhHHHHHHHHhccCC--cEEE
Q 019500          117 -LEAMEAE-LDLVVCITEGIPQHDMVRVKAALNNQSK--TRLV  155 (340)
Q Consensus       117 -~ea~~~G-vk~vvi~t~Gf~e~~~~~l~~~aar~~g--irvi  155 (340)
                       +.+++.- -..+|+-.+=.+.+..+++.+.+ ++.|  +.++
T Consensus        81 ~~g~~~~l~~g~iivd~STi~p~~~~~la~~l-~~~g~~~~~l  122 (1378)
T PLN02858         81 DEGAAKGLQKGAVILIRSTILPLQLQKLEKKL-TERKEQIFLV  122 (1378)
T ss_pred             hhhHHhcCCCcCEEEECCCCCHHHHHHHHHHH-HhcCCceEEE
Confidence             2233321 12345445545555666666655 4556  6655

>PLN03139 formate dehydrogenase; Provisional

Probab=94.88  E-value=0.26  Score=49.43  Aligned_cols=104  Identities=12%  Similarity=0.121  Sum_probs=63.5

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc---eecCcccccCHHHhhccCCCcEEEEecCh-hhHHHHHHH-
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPP-PFAAAAILE-  118 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~---~i~G~p~y~sl~dip~~~~vDlavi~vp~-~~v~~~v~e-  118 (340)
                      .|.|+|. |++|+.+++.+..+|++++ ..||.....   ...|+..+.+++++..  ..|++++++|- +....++.+ 
T Consensus       201 tVGIVG~-G~IG~~vA~~L~afG~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~sDvV~l~lPlt~~T~~li~~~  276 (386)
T PLN03139        201 TVGTVGA-GRIGRLLLQRLKPFNCNLL-YHDRLKMDPELEKETGAKFEEDLDAMLP--KCDVVVINTPLTEKTRGMFNKE  276 (386)
T ss_pred             EEEEEee-cHHHHHHHHHHHHCCCEEE-EECCCCcchhhHhhcCceecCCHHHHHh--hCCEEEEeCCCCHHHHHHhCHH
Confidence            4566698 9999999999999999976 467653111   2346666779999986  48999999994 333444422 


Q ss_pred             HHH-cCCcEEEEecCCC-ChhhHHHHHHHHhccCCcE
Q 019500          119 AME-AELDLVVCITEGI-PQHDMVRVKAALNNQSKTR  153 (340)
Q Consensus       119 a~~-~Gvk~vvi~t~Gf-~e~~~~~l~~~aar~~gir  153 (340)
                      .++ .+-..++ +-.+- .--+.+.|.+++ ++..+.
T Consensus       277 ~l~~mk~ga~l-IN~aRG~iVDe~AL~~AL-~sG~l~  311 (386)
T PLN03139        277 RIAKMKKGVLI-VNNARGAIMDTQAVADAC-SSGHIG  311 (386)
T ss_pred             HHhhCCCCeEE-EECCCCchhhHHHHHHHH-HcCCce
Confidence            222 2333333 33322 223445565655 444443

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=94.86  E-value=0.27  Score=45.35  Aligned_cols=34  Identities=32%  Similarity=0.437  Sum_probs=28.3

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEee
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGV   73 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~V   73 (340)
                      +++.+|+|.|+||..|+.+++.|.+.|++++..+
T Consensus        15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~   48 (251)
T PLN00141         15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGV   48 (251)
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEe
Confidence            4456788999999999999999999999876443

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.85  E-value=0.2  Score=50.53  Aligned_cols=100  Identities=14%  Similarity=0.144  Sum_probs=61.0

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce---ecCccccc-CHHHhhc-------------cCCCcEEEE
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFN-TVAEAKA-------------ETKANASAI  105 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~---i~G~p~y~-sl~dip~-------------~~~vDlavi  105 (340)
                      .+|.|+|. |.+|...+..|.+.|++++ ++|++...-+   -...|.+. .++++..             ..+.|++++
T Consensus         4 ~kI~VIGl-G~~G~~~A~~La~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii   81 (415)
T PRK11064          4 ETISVIGL-GYIGLPTAAAFASRQKQVI-GVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLI   81 (415)
T ss_pred             cEEEEECc-chhhHHHHHHHHhCCCEEE-EEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEE
Confidence            35677799 9999999999999999865 5554431011   12344442 4444421             014899999


Q ss_pred             ecCh----------hhHHHHHHHHHHcC-CcEEEEecCCCChhhHHHHHH
Q 019500          106 YVPP----------PFAAAAILEAMEAE-LDLVVCITEGIPQHDMVRVKA  144 (340)
Q Consensus       106 ~vp~----------~~v~~~v~ea~~~G-vk~vvi~t~Gf~e~~~~~l~~  144 (340)
                      |+|.          ..+.++++...+.- -..+||..|..+....+++.+
T Consensus        82 ~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~  131 (415)
T PRK11064         82 AVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAE  131 (415)
T ss_pred             EcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHH
Confidence            9998          46666666655532 234566666665544444444

>PRK13243 glyoxylate reductase; Reviewed

Probab=94.83  E-value=0.23  Score=48.63  Aligned_cols=64  Identities=16%  Similarity=0.299  Sum_probs=47.0

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc--eecCcccccCHHHhhccCCCcEEEEecChh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~--~i~G~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      ..+|.|+|. |++|+.+++.+..+|++++ .+||.....  ...|.+ +.+++++..  ..|++++++|..
T Consensus       150 gktvgIiG~-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~-~~~l~ell~--~aDiV~l~lP~t  215 (333)
T PRK13243        150 GKTIGIIGF-GRIGQAVARRAKGFGMRIL-YYSRTRKPEAEKELGAE-YRPLEELLR--ESDFVSLHVPLT  215 (333)
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCCChhhHHHcCCE-ecCHHHHHh--hCCEEEEeCCCC
Confidence            334666799 9999999999999999866 677654211  123443 568999876  489999999963

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=94.80  E-value=0.067  Score=52.59  Aligned_cols=86  Identities=15%  Similarity=0.056  Sum_probs=57.6

Q ss_pred             EEEeCCCCCcchHHHHHHHHcCCe---EEEeeCCCCCCcee--cCcc-cccC--HHHhhccCCCcEEEEecChhhHHHHH
Q 019500           45 VICQGITGKNGTFHTEQAIEYGTK---MVGGVTPKKGGTEH--LGLP-VFNT--VAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~G~~---vv~~VnP~~~g~~i--~G~p-~y~s--l~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      |.|+||||..|..+++.|.+.++.   ++.....+..|+.+  .|.. .+.+  ..++ .  ++|++++++|.....+.+
T Consensus         2 VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~-~--~~D~v~~a~g~~~s~~~a   78 (339)
T TIGR01296         2 VAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESF-E--GIDIALFSAGGSVSKEFA   78 (339)
T ss_pred             EEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHh-c--CCCEEEECCCHHHHHHHH
Confidence            567799999999999999886664   33222333333433  2321 2222  2333 2  599999999999999999


Q ss_pred             HHHHHcCCcEEEEecCCC
Q 019500          117 LEAMEAELDLVVCITEGI  134 (340)
Q Consensus       117 ~ea~~~Gvk~vvi~t~Gf  134 (340)
                      .++.++|++ +|-.++.|
T Consensus        79 ~~~~~~G~~-VID~ss~~   95 (339)
T TIGR01296        79 PKAAKCGAI-VIDNTSAF   95 (339)
T ss_pred             HHHHHCCCE-EEECCHHH
Confidence            999999985 34445544

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=94.51  E-value=0.15  Score=52.99  Aligned_cols=63  Identities=22%  Similarity=0.404  Sum_probs=48.0

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc--eecCcccccCHHHhhccCCCcEEEEecChh
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~--~i~G~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      +|.|+|. |++|+.+++.+..+|++++ ..||....+  .-.|++.+.+++++..  ..|++++++|..
T Consensus       140 tvgIiG~-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~lPlt  204 (525)
T TIGR01327       140 TLGVIGL-GRIGSIVAKRAKAFGMKVL-AYDPYISPERAEQLGVELVDDLDELLA--RADFITVHTPLT  204 (525)
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCEEE-EECCCCChhHHHhcCCEEcCCHHHHHh--hCCEEEEccCCC
Confidence            4566699 9999999999999999866 678742111  2346665678999987  589999999964

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PLN00016 RNA-binding protein; Provisional

Probab=94.45  E-value=0.26  Score=48.57  Aligned_cols=92  Identities=11%  Similarity=0.024  Sum_probs=59.8

Q ss_pred             CCeEEEEe----CCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce-------------ecCcccc-cCHHHh---hccCC
Q 019500           41 KNTRVICQ----GITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-------------HLGLPVF-NTVAEA---KAETK   99 (340)
Q Consensus        41 ~~iaViVv----Gasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~-------------i~G~p~y-~sl~di---p~~~~   99 (340)
                      .+.+|+|.    |++|..|+.+++.|.+.|++++..+........             -.|+..+ .++.++   .....
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~~~~  130 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVAGAG  130 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhccCC
Confidence            34579999    999999999999999999987744332210000             1234333 355543   22235


Q ss_pred             CcEEEEecC--hhhHHHHHHHHHHcCCcEEEEecC
Q 019500          100 ANASAIYVP--PPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       100 vDlavi~vp--~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      +|+++.+..  .+.+..+++.|.+.|++.+|.+++
T Consensus       131 ~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS  165 (378)
T PLN00016        131 FDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSS  165 (378)
T ss_pred             ccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            898887753  234667788888899988665554

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=94.42  E-value=0.28  Score=46.60  Aligned_cols=89  Identities=21%  Similarity=0.208  Sum_probs=57.8

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC-------CCceec---C-----cccccCHHHhhccCCCcEEEEecC
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK-------GGTEHL---G-----LPVFNTVAEAKAETKANASAIYVP  108 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~-------~g~~i~---G-----~p~y~sl~dip~~~~vDlavi~vp  108 (340)
                      +|.|+|+ |.+|...+..|.+.|+++. .+++..       .|-.+.   +     .+...+.++..+  +.|++++++|
T Consensus         2 kI~IiG~-G~iG~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~vilavk   77 (305)
T PRK12921          2 RIAVVGA-GAVGGTFGGRLLEAGRDVT-FLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTG--PFDLVILAVK   77 (305)
T ss_pred             eEEEECC-CHHHHHHHHHHHHCCCceE-EEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccC--CCCEEEEEec
Confidence            5777899 9999999999998888755 344310       011111   1     112334555543  5899999999


Q ss_pred             hhhHHHHHHHHHHcC-C-cEEEEecCCCCh
Q 019500          109 PPFAAAAILEAMEAE-L-DLVVCITEGIPQ  136 (340)
Q Consensus       109 ~~~v~~~v~ea~~~G-v-k~vvi~t~Gf~e  136 (340)
                      +..+.++++++...- - ..++.++.|+..
T Consensus        78 ~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~  107 (305)
T PRK12921         78 AYQLDAAIPDLKPLVGEDTVIIPLQNGIGQ  107 (305)
T ss_pred             ccCHHHHHHHHHhhcCCCCEEEEeeCCCCh
Confidence            999999888887642 2 234556778853

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=94.31  E-value=0.24  Score=49.40  Aligned_cols=93  Identities=17%  Similarity=0.214  Sum_probs=58.4

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc----------eecCcccc-------cCHHHhhccC--CC
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT----------EHLGLPVF-------NTVAEAKAET--KA  100 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~----------~i~G~p~y-------~sl~dip~~~--~v  100 (340)
                      ++..+|+|.|++|.+|+.+++.|.+.|++++..+.+...-.          ...++..+       .++.++.+..  ++
T Consensus        58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~  137 (390)
T PLN02657         58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDPV  137 (390)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCCC
Confidence            34567899999999999999999999999775543221000          01122222       2344444321  48


Q ss_pred             cEEEEecCh-------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          101 NASAIYVPP-------------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       101 Dlavi~vp~-------------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      |+++.+..+             .....+++.|.+.|++.+|.+++
T Consensus       138 D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS  182 (390)
T PLN02657        138 DVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSA  182 (390)
T ss_pred             cEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEee
Confidence            998876532             12446778888889998776665

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=94.26  E-value=0.24  Score=48.56  Aligned_cols=69  Identities=22%  Similarity=0.313  Sum_probs=51.0

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC--CceecCcccccCHHHhhccCCCcEEEEecCh-hhHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--GTEHLGLPVFNTVAEAKAETKANASAIYVPP-PFAAAAI  116 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~--g~~i~G~p~y~sl~dip~~~~vDlavi~vp~-~~v~~~v  116 (340)
                      .|.|+|. |++|+.+++.+..+|++++ ..||...  -....+..-..+|+++..  ..|++++.+|- +....++
T Consensus       144 TvGIiG~-G~IG~~va~~l~afgm~v~-~~d~~~~~~~~~~~~~~~~~~Ld~lL~--~sDiv~lh~PlT~eT~g~i  215 (324)
T COG0111         144 TVGIIGL-GRIGRAVAKRLKAFGMKVI-GYDPYSPRERAGVDGVVGVDSLDELLA--EADILTLHLPLTPETRGLI  215 (324)
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCeEE-EECCCCchhhhccccceecccHHHHHh--hCCEEEEcCCCCcchhccc
Confidence            3566699 9999999999999999977 7888321  023445555678999997  48999999986 3344444

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=94.17  E-value=0.32  Score=49.85  Aligned_cols=106  Identities=14%  Similarity=0.064  Sum_probs=65.8

Q ss_pred             cchHHHHHHHHcCCeEEEeeCCCCCC-ce-e------cCcccccCHHHhhcc-CCCcEEEEecChhh-HHHHHHHHHHcC
Q 019500           54 NGTFHTEQAIEYGTKMVGGVTPKKGG-TE-H------LGLPVFNTVAEAKAE-TKANASAIYVPPPF-AAAAILEAMEAE  123 (340)
Q Consensus        54 ~G~~v~~~l~~~G~~vv~~VnP~~~g-~~-i------~G~p~y~sl~dip~~-~~vDlavi~vp~~~-v~~~v~ea~~~G  123 (340)
                      ||+.+++||.+.||++. ..|..... ++ +      .|...+.|++|+.+. ..+|++++++|... +.++++.++..-
T Consensus         1 MG~~mA~nL~~~G~~V~-v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l   79 (459)
T PRK09287          1 MGKNLALNIASHGYTVA-VYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLL   79 (459)
T ss_pred             CcHHHHHHHHhCCCeEE-EECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcC
Confidence            68899999999999955 55654310 11 1      147788999999863 24899999999864 445555555432


Q ss_pred             C-cEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCC
Q 019500          124 L-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG  161 (340)
Q Consensus       124 v-k~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~G  161 (340)
                      - ..+||=.+-....+..+..+.+ ++.|+++++---.|
T Consensus        80 ~~GdiiID~gn~~~~~t~~~~~~l-~~~Gi~fvdapVSG  117 (459)
T PRK09287         80 EKGDIIIDGGNSNYKDTIRREKEL-AEKGIHFIGMGVSG  117 (459)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHH-HhcCCeEEecCCCC
Confidence            2 2233222222233444444444 67899988766555

>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B

Probab=94.16  E-value=0.13  Score=44.05  Aligned_cols=81  Identities=22%  Similarity=0.258  Sum_probs=49.5

Q ss_pred             EEeCCCCCcchHHHHHHHH---cCCeEEEeeCCCC--CCceecCcccccCHHHhhc---cCCCcEEEEecCh---hhHHH
Q 019500           46 ICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKK--GGTEHLGLPVFNTVAEAKA---ETKANASAIYVPP---PFAAA  114 (340)
Q Consensus        46 iVvGasgk~G~~v~~~l~~---~G~~vv~~VnP~~--~g~~i~G~p~y~sl~dip~---~~~vDlavi~vp~---~~v~~  114 (340)
                      .++|. +..+..+.+.+.+   .||++++.++++.  .++++.|+|+..+++|+++   ++++|-++++.|.   +...+
T Consensus        81 ~~v~~-~~~~~~~~~~l~~~~~~g~~vvg~~d~~~~~~~~~~~~~~~lg~~~~l~~~~~~~~id~v~ial~~~~~~~i~~  159 (175)
T PF13727_consen   81 LIVGA-GGAGRELAEALRSNPRLGYRVVGFVDDDPSDRGPEIDGVPVLGDLDDLPELVREHDIDEVIIALPWSEEEQIKR  159 (175)
T ss_dssp             EEE---SHHHHHHHHHHHH--SSSEEEEEEE-S-GGGTT-EETTEEEE--GGGHHHHHHHHT--EEEE--TTS-HHHHHH
T ss_pred             EEEEE-echHHHHHHHHHhhhhcCceEEEEEeCchhhccCcccCceeEcCHHHHHHHHHhCCCCEEEEEcCccCHHHHHH
Confidence            34464 5556677777766   4889887777654  2356789999987777764   3579999999876   45667


Q ss_pred             HHHHHHHcCCcEE
Q 019500          115 AILEAMEAELDLV  127 (340)
Q Consensus       115 ~v~ea~~~Gvk~v  127 (340)
                      ++++|-+.|++.-
T Consensus       160 ii~~~~~~~v~v~  172 (175)
T PF13727_consen  160 IIEELENHGVRVR  172 (175)
T ss_dssp             HHHHHHTTT-EEE
T ss_pred             HHHHHHhCCCEEE
Confidence            8888888888763

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.13  E-value=0.19  Score=47.89  Aligned_cols=31  Identities=16%  Similarity=0.024  Sum_probs=24.5

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCC
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK   76 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~   76 (340)
                      +|.|+|+ |.||..++..+.+.|++++ .+|++
T Consensus         5 ~I~ViGa-G~mG~~iA~~la~~G~~V~-l~d~~   35 (291)
T PRK06035          5 VIGVVGS-GVMGQGIAQVFARTGYDVT-IVDVS   35 (291)
T ss_pred             EEEEECc-cHHHHHHHHHHHhcCCeEE-EEeCC
Confidence            4667799 9999999999999999854 45543

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=94.08  E-value=0.23  Score=48.54  Aligned_cols=91  Identities=15%  Similarity=0.116  Sum_probs=63.9

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcC--CeEEEeeCCC----------C-------CCc--------ee--cCcccccC--
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPK----------K-------GGT--------EH--LGLPVFNT--   90 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G--~~vv~~VnP~----------~-------~g~--------~i--~G~p~y~s--   90 (340)
                      .++|.|.|. |++|+.+++.+.+.+  .++++..++.          +       .++        .+  .+++++.+  
T Consensus         1 ~ikV~INGf-GrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~   79 (335)
T COG0057           1 MIKVAINGF-GRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERD   79 (335)
T ss_pred             CcEEEEecC-cHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCC
Confidence            368999999 999999999888864  6777432211          1       100        12  25677764  


Q ss_pred             HHHhhcc-CCCcEEEEecChhhHHHHHHHHHHc-CCcEEEEecCC
Q 019500           91 VAEAKAE-TKANASAIYVPPPFAAAAILEAMEA-ELDLVVCITEG  133 (340)
Q Consensus        91 l~dip~~-~~vDlavi~vp~~~v~~~v~ea~~~-Gvk~vvi~t~G  133 (340)
                      .+++|-. ..+|+++.|+|--.-.+..+.-+++ |+|.+++-.++
T Consensus        80 p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~  124 (335)
T COG0057          80 PANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPG  124 (335)
T ss_pred             hHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCC
Confidence            4566643 4689999999999988888888888 59997754444

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=94.03  E-value=0.24  Score=45.62  Aligned_cols=94  Identities=18%  Similarity=0.139  Sum_probs=55.8

Q ss_pred             CHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHh---C-CCCCEEEEEeCCCCCCCCc-ccccCcccccccccce
Q 019500          222 NFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKES---G-TEKPIVAFIAGLTAPPGRR-MGHAGVDVYTIFGSAI  296 (340)
Q Consensus       222 ~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~---r-~~KPVvvlk~Grs~~~g~~-~sHtg~~~~~~~~~al  296 (340)
                      ++.+.|+.+.+||+.++|+|.+++.|-...+..++.+++   + .+|||+++--|-+.. |.- ++++.--+....  +.
T Consensus        33 ~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~~~sg-gy~lasaad~I~a~p~--~~  109 (222)
T cd07018          33 DLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADGYSQG-QYYLASAADEIYLNPS--GS  109 (222)
T ss_pred             HHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCCCCch-hhhhhhhCCEEEECCC--ce
Confidence            455667778889999999999998776666666665554   3 589999997763322 311 222221111111  11


Q ss_pred             e-c-CCCCcHHHHHHHHHHcCCee
Q 019500          297 V-S-GGKGTAQDKIKTLREAGVTV  318 (340)
Q Consensus       297 a-~-~~~g~~~~~~a~~~qaGvv~  318 (340)
                      . + |-.....-+..+|++.||-.
T Consensus       110 vg~iGv~~~~~~~~~ll~klGv~~  133 (222)
T cd07018         110 VELTGLSAETLFFKGLLDKLGVEV  133 (222)
T ss_pred             EEeeccchhhhhHHHHHHHcCCcE
Confidence            1 0 00123445778899999864

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.01  E-value=0.13  Score=48.97  Aligned_cols=90  Identities=10%  Similarity=0.061  Sum_probs=52.7

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEE-EeeCCCCCCcee------------cC-------------cccccCHHHhhcc
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGTEH------------LG-------------LPVFNTVAEAKAE   97 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv-~~VnP~~~g~~i------------~G-------------~p~y~sl~dip~~   97 (340)
                      +|.|+|+ |.||..++..+...|++++ +-.||+....-.            .|             +..-.+++++.  
T Consensus         6 kI~vIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~--   82 (292)
T PRK07530          6 KVGVIGA-GQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDLA--   82 (292)
T ss_pred             EEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHhc--
Confidence            4667799 9999999999999999844 334443210000            12             23345666543  


Q ss_pred             CCCcEEEEecChhh--HHHHHHHHHHcC-CcEEEE-ecCCCChh
Q 019500           98 TKANASAIYVPPPF--AAAAILEAMEAE-LDLVVC-ITEGIPQH  137 (340)
Q Consensus        98 ~~vDlavi~vp~~~--v~~~v~ea~~~G-vk~vvi-~t~Gf~e~  137 (340)
                       +.|+++.++|.+.  -..++++..+.- -..+++ -|++++..
T Consensus        83 -~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s  125 (292)
T PRK07530         83 -DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISIT  125 (292)
T ss_pred             -CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH
Confidence             5899999998752  234444443331 123333 56677643

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=93.95  E-value=0.47  Score=45.98  Aligned_cols=194  Identities=18%  Similarity=0.192  Sum_probs=113.2

Q ss_pred             CcCCeEEEEeCCCCCcchHHHHHHHHcCCe-EEEeeCCCCCCce--ecCcccccCHHHhhccCCCcEEEEecChhhHH-H
Q 019500           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGTE--HLGLPVFNTVAEAKAETKANASAIYVPPPFAA-A  114 (340)
Q Consensus        39 ~p~~iaViVvGasgk~G~~v~~~l~~~G~~-vv~~VnP~~~g~~--i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~-~  114 (340)
                      .|...+|--+|. |.||+..++||++.||+ .||-+++... ++  -.|..++.|-.|+.+  ..|+++.++|..... +
T Consensus        32 ~~s~~~iGFIGL-G~MG~~M~~nLik~G~kVtV~dr~~~k~-~~f~~~Ga~v~~sPaeVae--~sDvvitmv~~~~~v~~  107 (327)
T KOG0409|consen   32 TPSKTRIGFIGL-GNMGSAMVSNLIKAGYKVTVYDRTKDKC-KEFQEAGARVANSPAEVAE--DSDVVITMVPNPKDVKD  107 (327)
T ss_pred             CcccceeeEEee-ccchHHHHHHHHHcCCEEEEEeCcHHHH-HHHHHhchhhhCCHHHHHh--hcCEEEEEcCChHhhHH
Confidence            344556666688 99999999999999999 5666665431 22  358899999999998  599999999875543 3


Q ss_pred             HHHHHHHcCCcE-------EEEecCCCChhhHHHHHHHHhccCCcE-EEccCCCCcccCCCcccccCCC-C---------
Q 019500          115 AILEAMEAELDL-------VVCITEGIPQHDMVRVKAALNNQSKTR-LVGPNCPGVIKPGECKIGIMPG-Y---------  176 (340)
Q Consensus       115 ~v~ea~~~Gvk~-------vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPNc~Gi~~p~~~~~~~~~~-~---------  176 (340)
                      ++..  +.|+-.       ..|-.+-..+.-..+|.+.+ +..|.+ |=.|=+-|..-...-.++|+.. .         
T Consensus       108 v~~g--~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i-~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~  184 (327)
T KOG0409|consen  108 VLLG--KSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAI-SNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASP  184 (327)
T ss_pred             HhcC--CCcceeeccCCCceEEeccccCHHHHHHHHHHH-HhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHH
Confidence            3322  333211       11222333333355666665 444556 4477777765443112333211 0         


Q ss_pred             -CCCCC-cEEEEecChHHHHH-HH-HHHH-hCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEE
Q 019500          177 -IHKPG-RIGIVSRSGTLTYE-AV-FQTT-AVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILI  242 (340)
Q Consensus       177 -~~~~G-~valvSQSG~l~~~-~~-~~~~-~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly  242 (340)
                       .-.=| .+-+..++|+-... +. +.+. -.=+|++-...+|-..  +++...|++-+.. -......+|
T Consensus       185 ~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~--GLd~~~l~eiln~-G~~~S~~~~  252 (327)
T KOG0409|consen  185 VFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRL--GLDAKKLLEILNT-GRCWSSMFY  252 (327)
T ss_pred             HHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhc-CCcccHHHh
Confidence             01125 67777777743322 11 1111 1124566666677775  7888888887765 444444444

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=93.93  E-value=0.11  Score=45.46  Aligned_cols=86  Identities=15%  Similarity=0.094  Sum_probs=60.4

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCc--------------------------eecCc--ccc--cCH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT--------------------------EHLGL--PVF--NTV   91 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~--------------------------~i~G~--p~y--~sl   91 (340)
                      ++|.|.|. |++|+.+++.+... .+++++.-+|...-+                          .+.|.  +++  ++.
T Consensus         1 ikVgINGf-GRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~dp   79 (151)
T PF00044_consen    1 IKVGINGF-GRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERDP   79 (151)
T ss_dssp             EEEEEEST-SHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTSSG
T ss_pred             CEEEEECC-CcccHHHHHhhcccceEEEEEEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhhhh
Confidence            57889999 99999999988753 677775544541101                          02342  222  345


Q ss_pred             HHhh-ccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 019500           92 AEAK-AETKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (340)
Q Consensus        92 ~dip-~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi  129 (340)
                      +++| .+..+|+++.|++.-...+..+.-++.|+|.+++
T Consensus        80 ~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkVii  118 (151)
T PF00044_consen   80 EEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVII  118 (151)
T ss_dssp             GGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEE
T ss_pred             cccccccccccEEEeccccceecccccccccccccceee
Confidence            5665 2246899999999999889999999999999664

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=93.91  E-value=0.071  Score=50.80  Aligned_cols=83  Identities=17%  Similarity=0.177  Sum_probs=53.4

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEec----------Ch---
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYV----------PP---  109 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~v----------p~---  109 (340)
                      ++|+|+|+||-+|+.+.+.+.+.|++++ .++.+.  -.   +.-...+.++.++.+||++|-+.          .+   
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~~v~-~~~r~~--~d---l~d~~~~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a   74 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGYEVI-ATSRSD--LD---LTDPEAVAKLLEAFKPDVVINCAAYTNVDACEKNPEEA   74 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSEEEE-EESTTC--S----TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCCEEE-EeCchh--cC---CCCHHHHHHHHHHhCCCeEeccceeecHHhhhhChhhh
Confidence            4789999999999999999998888876 445442  12   22234566665544699999885          11   


Q ss_pred             -----hhHHHHHHHHHHcCCcEEEEecC
Q 019500          110 -----PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       110 -----~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                           .....+++.|.+.|++.+. +|+
T Consensus        75 ~~iN~~~~~~la~~~~~~~~~li~-~ST  101 (286)
T PF04321_consen   75 YAINVDATKNLAEACKERGARLIH-IST  101 (286)
T ss_dssp             HHHHTHHHHHHHHHHHHCT-EEEE-EEE
T ss_pred             HHHhhHHHHHHHHHHHHcCCcEEE-eec
Confidence                 2233567788889999866 454

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.90  E-value=0.34  Score=46.08  Aligned_cols=90  Identities=14%  Similarity=0.056  Sum_probs=55.3

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce---------------------------ecCcccccCHHHhh
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---------------------------HLGLPVFNTVAEAK   95 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~---------------------------i~G~p~y~sl~dip   95 (340)
                      +|.|+|+ |.||..++..+.+.|+++. .++++... +.                           ...+....++++..
T Consensus         5 kIaViGa-G~mG~~iA~~la~~G~~V~-l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~   82 (287)
T PRK08293          5 NVTVAGA-GVLGSQIAFQTAFHGFDVT-IYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV   82 (287)
T ss_pred             EEEEECC-CHHHHHHHHHHHhcCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence            5667799 9999999999988898844 44443200 00                           01233456787765


Q ss_pred             ccCCCcEEEEecChh--hHHHHHHHHHHcCC-cEEE-EecCCCChh
Q 019500           96 AETKANASAIYVPPP--FAAAAILEAMEAEL-DLVV-CITEGIPQH  137 (340)
Q Consensus        96 ~~~~vDlavi~vp~~--~v~~~v~ea~~~Gv-k~vv-i~t~Gf~e~  137 (340)
                      +  +.|+++.++|.+  ...+++++..+.-- +.++ .-|+.++..
T Consensus        83 ~--~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~  126 (287)
T PRK08293         83 K--DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPS  126 (287)
T ss_pred             c--CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHH
Confidence            5  589999999955  55666666554322 2333 344555443

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=93.89  E-value=0.36  Score=46.87  Aligned_cols=62  Identities=16%  Similarity=0.157  Sum_probs=47.1

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      .-.|.|+|. |+.|+.+++.+..+|.+++ ..||... ....+++ |.+++++..  ..|++++.+|-
T Consensus       145 gktvGIiG~-G~IG~~vA~~~~~fgm~V~-~~d~~~~-~~~~~~~-~~~l~ell~--~sDvv~lh~Pl  206 (311)
T PRK08410        145 GKKWGIIGL-GTIGKRVAKIAQAFGAKVV-YYSTSGK-NKNEEYE-RVSLEELLK--TSDIISIHAPL  206 (311)
T ss_pred             CCEEEEECC-CHHHHHHHHHHhhcCCEEE-EECCCcc-ccccCce-eecHHHHhh--cCCEEEEeCCC
Confidence            334667799 9999999999999999877 6787541 1223443 668999987  48999999984

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=93.83  E-value=0.24  Score=47.69  Aligned_cols=75  Identities=17%  Similarity=0.115  Sum_probs=49.6

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce-------------ecC-------------cccccCHHHhhc
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE-------------HLG-------------LPVFNTVAEAKA   96 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~-------------i~G-------------~p~y~sl~dip~   96 (340)
                      +|.|+|+ |.||..++.++.+.|++++ .+|++... +.             -.|             +....++++..+
T Consensus         4 ~V~VIG~-G~mG~~iA~~la~~G~~V~-v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~   81 (308)
T PRK06129          4 SVAIIGA-GLIGRAWAIVFARAGHEVR-LWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA   81 (308)
T ss_pred             EEEEECc-cHHHHHHHHHHHHCCCeeE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence            5677797 9999999999999999855 56654310 00             012             245567877665


Q ss_pred             cCCCcEEEEecChh--hHHHHHHHHHHc
Q 019500           97 ETKANASAIYVPPP--FAAAAILEAMEA  122 (340)
Q Consensus        97 ~~~vDlavi~vp~~--~v~~~v~ea~~~  122 (340)
                        +.|+++.++|.+  .-..++.++.+.
T Consensus        82 --~ad~Vi~avpe~~~~k~~~~~~l~~~  107 (308)
T PRK06129         82 --DADYVQESAPENLELKRALFAELDAL  107 (308)
T ss_pred             --CCCEEEECCcCCHHHHHHHHHHHHHh
Confidence              599999999975  334445554443

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=93.80  E-value=0.46  Score=45.81  Aligned_cols=92  Identities=12%  Similarity=0.083  Sum_probs=57.0

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEE-eeCCCC----CCcee---cC------cccccCHHHhhccCCCcEEEEec
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKK----GGTEH---LG------LPVFNTVAEAKAETKANASAIYV  107 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~-~VnP~~----~g~~i---~G------~p~y~sl~dip~~~~vDlavi~v  107 (340)
                      ..+|.|+|+ |.+|......|.+.|+++.. .-++..    .|-.+   .|      .+++.+.++..   .+|+++++|
T Consensus         5 ~m~I~IiG~-GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~D~vilav   80 (313)
T PRK06249          5 TPRIGIIGT-GAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMP---PCDWVLVGL   80 (313)
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhhcC---CCCEEEEEe
Confidence            457888899 99999999999988887442 222211    01111   12      22333443322   589999999


Q ss_pred             ChhhHHHHHHHHHHcC--CcEEEEecCCCChh
Q 019500          108 PPPFAAAAILEAMEAE--LDLVVCITEGIPQH  137 (340)
Q Consensus       108 p~~~v~~~v~ea~~~G--vk~vvi~t~Gf~e~  137 (340)
                      +...+.++++.....-  -..++.++-|+..+
T Consensus        81 K~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~  112 (313)
T PRK06249         81 KTTANALLAPLIPQVAAPDAKVLLLQNGLGVE  112 (313)
T ss_pred             cCCChHhHHHHHhhhcCCCCEEEEecCCCCcH
Confidence            9988887776665432  12356677888643

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=93.70  E-value=0.26  Score=50.89  Aligned_cols=108  Identities=20%  Similarity=0.239  Sum_probs=62.8

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc-ee---------------------cC-cccccCHHHhhccCCC
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-EH---------------------LG-LPVFNTVAEAKAETKA  100 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~-~i---------------------~G-~p~y~sl~dip~~~~v  100 (340)
                      +|.|+|+ |.||..++.++.+.|+++. ..|++.... .+                     .| +....++++..+  +.
T Consensus         6 kIavIG~-G~MG~~iA~~la~~G~~V~-v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~--~a   81 (495)
T PRK07531          6 KAACIGG-GVIGGGWAARFLLAGIDVA-VFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVA--GA   81 (495)
T ss_pred             EEEEECc-CHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhc--CC
Confidence            4667799 9999999999999999854 555543101 10                     12 455567877665  59


Q ss_pred             cEEEEecChhhH-HH-HHHHHHHcCCc---EEEEecCCCChhhHHHHHHHHhccCCcEEEccCC
Q 019500          101 NASAIYVPPPFA-AA-AILEAMEAELD---LVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC  159 (340)
Q Consensus       101 Dlavi~vp~~~v-~~-~v~ea~~~Gvk---~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc  159 (340)
                      |+++.++|.+.. .. ++.+. +...+   .+..-|+|++..+   +.+.+.+...+-+.-|+.
T Consensus        82 D~Vieavpe~~~vk~~l~~~l-~~~~~~~~iI~SsTsgi~~s~---l~~~~~~~~r~~~~hP~n  141 (495)
T PRK07531         82 DWIQESVPERLDLKRRVLAEI-DAAARPDALIGSSTSGFLPSD---LQEGMTHPERLFVAHPYN  141 (495)
T ss_pred             CEEEEcCcCCHHHHHHHHHHH-HhhCCCCcEEEEcCCCCCHHH---HHhhcCCcceEEEEecCC
Confidence            999999998852 22 33333 22222   2333445776443   333332333344555653

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=93.65  E-value=0.092  Score=46.55  Aligned_cols=63  Identities=19%  Similarity=0.339  Sum_probs=45.4

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce---ecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~---i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      ...|.|+|. |+.|+.+++.+..+|++++ .+||......   ..+. -|.+++|+..  ..|++++..|.
T Consensus        36 g~tvgIiG~-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~~~~-~~~~l~ell~--~aDiv~~~~pl  101 (178)
T PF02826_consen   36 GKTVGIIGY-GRIGRAVARRLKAFGMRVI-GYDRSPKPEEGADEFGV-EYVSLDELLA--QADIVSLHLPL  101 (178)
T ss_dssp             TSEEEEEST-SHHHHHHHHHHHHTT-EEE-EEESSCHHHHHHHHTTE-EESSHHHHHH--H-SEEEE-SSS
T ss_pred             CCEEEEEEE-cCCcCeEeeeeecCCceeE-EecccCChhhhcccccc-eeeehhhhcc--hhhhhhhhhcc
Confidence            345667799 9999999999999999876 7888762111   2244 4669999987  48999999994

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated

Probab=93.63  E-value=0.25  Score=50.12  Aligned_cols=84  Identities=14%  Similarity=0.110  Sum_probs=57.8

Q ss_pred             EEEEeCCCCCcchHHHHHHHH---cCCeEEEeeCCCCCCceecCcccccCHHHhh---ccCCCcEEEEecChhhH---HH
Q 019500           44 RVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK---AETKANASAIYVPPPFA---AA  114 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~---~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip---~~~~vDlavi~vp~~~v---~~  114 (340)
                      +++|+|+ +..|..+.+.+.+   .||++++.+++......+.|+|++.+++|++   +++++|-++++.|...-   .+
T Consensus       126 rvLIIGa-g~~~~~L~~l~~~~~~~g~~vVGfi~~dd~~~~i~gvpVlG~~~dl~~~v~~~~Id~ViIAlp~~~~~~~~~  204 (442)
T TIGR03013       126 RILVLGT-GPRAREIARLRRSSDRRGHEIVGFVPLPDEPAYVPSEHVIENGDGLVEYVLRHRIDEIVIALDERRGSLPVD  204 (442)
T ss_pred             cEEEEEC-CHHHHHHHHHHHhCccCCeEEEEEEcCCccccccCCCcccCCHHHHHHHHHhCCCCEEEEECchhhcchHHH
Confidence            5778899 6667666444433   4789888784322114678999998766654   44679999999987543   23


Q ss_pred             HHHHHHHcCCcEEE
Q 019500          115 AILEAMEAELDLVV  128 (340)
Q Consensus       115 ~v~ea~~~Gvk~vv  128 (340)
                      .+++|-+.|++..+
T Consensus       205 ~l~~~~~~gv~V~i  218 (442)
T TIGR03013       205 ELLECKLSGIEVVD  218 (442)
T ss_pred             HHHHHHhCCCEEEE
Confidence            57888888887643

Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=93.59  E-value=0.27  Score=48.47  Aligned_cols=90  Identities=13%  Similarity=0.078  Sum_probs=63.2

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcC----CeEEEeeCC------------------------CCCCce--ecC--cccc--
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYG----TKMVGGVTP------------------------KKGGTE--HLG--LPVF--   88 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G----~~vv~~VnP------------------------~~~g~~--i~G--~p~y--   88 (340)
                      ++|.|+|+ |++|+.+.+.+.+.+    ++++ .||.                        +..|+.  +.|  ++++  
T Consensus         2 ~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vv-aind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~   79 (336)
T PRK13535          2 IRVAINGF-GRIGRNVLRALYESGRRAEITVV-AINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHE   79 (336)
T ss_pred             eEEEEECc-CHHHHHHHHHHHhcCCCCceEEE-EecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEc
Confidence            57888899 999999999988743    3444 4442                        111111  334  3344  


Q ss_pred             cCHHHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCC
Q 019500           89 NTVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIP  135 (340)
Q Consensus        89 ~sl~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~  135 (340)
                      ++++++|= +.++|+++.|+......+....++++|++.++ +|+-+.
T Consensus        80 ~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~-iSap~~  126 (336)
T PRK13535         80 RDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVL-FSHPGS  126 (336)
T ss_pred             CCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEE-ecCCcc
Confidence            26777763 24799999999999999999999999999855 565443

>PRK05865 hypothetical protein; Provisional

Probab=93.58  E-value=1.8  Score=47.80  Aligned_cols=88  Identities=18%  Similarity=0.123  Sum_probs=57.4

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcc-------cccCHHHhhccCCCcEEEEecCh-------
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLP-------VFNTVAEAKAETKANASAIYVPP-------  109 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p-------~y~sl~dip~~~~vDlavi~vp~-------  109 (340)
                      +|+|.|++|.+|+.+++.|.+.|++++........ ....++.       -..++.++.+  ++|.+|-+...       
T Consensus         2 kILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~-~~~~~v~~v~gDL~D~~~l~~al~--~vD~VVHlAa~~~~~~~v   78 (854)
T PRK05865          2 RIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPD-SWPSSADFIAADIRDATAVESAMT--GADVVAHCAWVRGRNDHI   78 (854)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchh-hcccCceEEEeeCCCHHHHHHHHh--CCCEEEECCCcccchHHH
Confidence            57889999999999999999999997744432110 0001122       1223444444  58999887643       


Q ss_pred             --hhHHHHHHHHHHcCCcEEEEecCCC
Q 019500          110 --PFAAAAILEAMEAELDLVVCITEGI  134 (340)
Q Consensus       110 --~~v~~~v~ea~~~Gvk~vvi~t~Gf  134 (340)
                        .....+++.|.+.|++.+|.+++..
T Consensus        79 Nv~GT~nLLeAa~~~gvkr~V~iSS~~  105 (854)
T PRK05865         79 NIDGTANVLKAMAETGTGRIVFTSSGH  105 (854)
T ss_pred             HHHHHHHHHHHHHHcCCCeEEEECCcH
Confidence              2345567778888998877677653

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=93.55  E-value=0.37  Score=43.71  Aligned_cols=64  Identities=20%  Similarity=0.295  Sum_probs=42.5

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEee-CCCCCCceecCcc-----ccc--CHHHhhccCCCcEEEEecChh
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGGTEHLGLP-----VFN--TVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~V-nP~~~g~~i~G~p-----~y~--sl~dip~~~~vDlavi~vp~~  110 (340)
                      +|+|+||||+.|+.+.+...+.|.++.+.| ||..- ....++.     +|.  ++++...  ..|++|.+..+.
T Consensus         2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~-~~~~~~~i~q~Difd~~~~a~~l~--g~DaVIsA~~~~   73 (211)
T COG2910           2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKL-AARQGVTILQKDIFDLTSLASDLA--GHDAVISAFGAG   73 (211)
T ss_pred             eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhc-cccccceeecccccChhhhHhhhc--CCceEEEeccCC
Confidence            567779999999999999999999988765 45431 1224443     332  2333333  579999876443

>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]

Probab=93.52  E-value=2.5  Score=42.24  Aligned_cols=124  Identities=18%  Similarity=0.287  Sum_probs=92.5

Q ss_pred             CCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCc-HHHHHHHH
Q 019500          179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTA-EEDAAALI  257 (340)
Q Consensus       179 ~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~-~~~~~~f~  257 (340)
                      ..|+|+.+.-.++++.+.+|...-.|--...|.-+|+.+ +.=.+.+.++.+..||++|+|.+-+=++=.. ..-++-..
T Consensus       254 LdG~IG~ivNGAGLaMaTmDii~~~Gg~PANFLDvGGgA-~~e~v~~a~~~il~d~~vk~IfVNIfGGI~rcD~vA~GIi  332 (387)
T COG0045         254 LDGNIGCIVNGAGLAMATMDIVKLYGGKPANFLDVGGGA-TAERVKEAFKLILSDPNVKAIFVNIFGGITRCDEVAEGII  332 (387)
T ss_pred             ecCcEEEEecChhHHHHHHHHHHHcCCCCcceeecCCCC-CHHHHHHHHHHHhcCCCccEEEEEEccCcCccHHHHHHHH
Confidence            359999999999999999999988888889999999887 3445889999999999999998875542110 11223334


Q ss_pred             HHhC---CCCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcC--CeecCCHHHHHHHHHHH
Q 019500          258 KESG---TEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAG--VTVVESPAKIGAAMLEV  332 (340)
Q Consensus       258 ~a~r---~~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaG--vv~v~~~~el~~~~~~~  332 (340)
                      ++++   .++|+|+=-.|..                             .+.-...++++|  +..+++++|....+.++
T Consensus       333 ~Al~e~~~~vPlVVRL~GtN-----------------------------~e~Gk~iL~esg~~i~~~~~l~~aa~k~v~~  383 (387)
T COG0045         333 AALKEVGVNVPLVVRLEGTN-----------------------------VEEGKRILAESGLNIIAADDLDEAAEKAVEL  383 (387)
T ss_pred             HHHHhcCCCCCEEEEcCCCC-----------------------------HHHHHHHHHHcCCceEecccHHHHHHHHHHH
Confidence            4544   6799998766643                             334567788888  88888888877665443

>PRK06932 glycerate dehydrogenase; Provisional

Probab=93.48  E-value=0.46  Score=46.21  Aligned_cols=61  Identities=18%  Similarity=0.115  Sum_probs=45.8

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      ...|.|+|. |++|+.+++.+..+|.+++ .+++..  ...... -|.+++++..  ..|++++++|-
T Consensus       147 gktvgIiG~-G~IG~~va~~l~~fg~~V~-~~~~~~--~~~~~~-~~~~l~ell~--~sDiv~l~~Pl  207 (314)
T PRK06932        147 GSTLGVFGK-GCLGTEVGRLAQALGMKVL-YAEHKG--ASVCRE-GYTPFEEVLK--QADIVTLHCPL  207 (314)
T ss_pred             CCEEEEECC-CHHHHHHHHHHhcCCCEEE-EECCCc--cccccc-ccCCHHHHHH--hCCEEEEcCCC
Confidence            345677799 9999999999999999977 467653  211111 2678999887  48999999984

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=93.46  E-value=0.19  Score=44.01  Aligned_cols=37  Identities=22%  Similarity=0.146  Sum_probs=30.3

Q ss_pred             CcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (340)
Q Consensus        39 ~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~   77 (340)
                      .-+.-+|+|+|. |++|...++.|.+.|.++. .|+|..
T Consensus        10 ~l~~~~vlVvGG-G~va~rka~~Ll~~ga~V~-VIsp~~   46 (157)
T PRK06719         10 NLHNKVVVIIGG-GKIAYRKASGLKDTGAFVT-VVSPEI   46 (157)
T ss_pred             EcCCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EEcCcc
Confidence            445667888999 9999999999999999866 778875

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=93.43  E-value=0.6  Score=47.11  Aligned_cols=68  Identities=18%  Similarity=0.137  Sum_probs=49.3

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh-hhHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP-PFAAAAI  116 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~-~~v~~~v  116 (340)
                      .|.|+|. |++|+.+++.+..+|++++ ..||... ....+...+.+++++..  ..|++++.+|- +.....+
T Consensus       153 tvGIiG~-G~IG~~vA~~~~~fGm~V~-~~d~~~~-~~~~~~~~~~~l~ell~--~sDiVslh~Plt~~T~~li  221 (409)
T PRK11790        153 TLGIVGY-GHIGTQLSVLAESLGMRVY-FYDIEDK-LPLGNARQVGSLEELLA--QSDVVSLHVPETPSTKNMI  221 (409)
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCEEE-EECCCcc-cccCCceecCCHHHHHh--hCCEEEEcCCCChHHhhcc
Confidence            4566699 9999999999999999976 6777541 12233444458999987  48999999995 3333444

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=93.39  E-value=0.27  Score=47.44  Aligned_cols=112  Identities=17%  Similarity=0.259  Sum_probs=64.2

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc---eecCccc--ccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPV--FNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~---~i~G~p~--y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      .-+|.|+|+ |.+|+.+++.+...|.++. .+|++....   +-.|.+.  |.++.+...  +.|+++.++|+..+.+..
T Consensus       152 g~kvlViG~-G~iG~~~a~~L~~~Ga~V~-v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~--~aDiVI~t~p~~~i~~~~  227 (296)
T PRK08306        152 GSNVLVLGF-GRTGMTLARTLKALGANVT-VGARKSAHLARITEMGLSPFHLSELAEEVG--KIDIIFNTIPALVLTKEV  227 (296)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHcCCeeecHHHHHHHhC--CCCEEEECCChhhhhHHH
Confidence            346788899 8999999999999998744 556543101   1234332  235555544  589999999976543333


Q ss_pred             HHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEcc-CCCCcc
Q 019500          117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGP-NCPGVI  163 (340)
Q Consensus       117 ~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGP-Nc~Gi~  163 (340)
                      -+..+.|. .++-+++.-...+.    +.+ +++|++.+++ |-.|.+
T Consensus       228 l~~~~~g~-vIIDla~~pggtd~----~~a-~~~Gv~~~~~~~lpg~v  269 (296)
T PRK08306        228 LSKMPPEA-LIIDLASKPGGTDF----EYA-EKRGIKALLAPGLPGKV  269 (296)
T ss_pred             HHcCCCCc-EEEEEccCCCCcCe----eeh-hhCCeEEEEECCCCccC
Confidence            23333332 23334432212222    122 6789998884 433443

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=93.37  E-value=0.5  Score=45.79  Aligned_cols=89  Identities=20%  Similarity=0.231  Sum_probs=57.0

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce--ecCcc-----------------cccCHHHhhccCCCcEEE
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--HLGLP-----------------VFNTVAEAKAETKANASA  104 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~--i~G~p-----------------~y~sl~dip~~~~vDlav  104 (340)
                      +|.|+|+ |.+|...+..|.+.|+++. .+++...-+.  -.|+.                 +..+.+++ .  +.|+++
T Consensus         4 kI~IiG~-G~mG~~~A~~L~~~G~~V~-~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~D~vi   78 (341)
T PRK08229          4 RICVLGA-GSIGCYLGGRLAAAGADVT-LIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAAL-A--TADLVL   78 (341)
T ss_pred             eEEEECC-CHHHHHHHHHHHhcCCcEE-EEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhhc-c--CCCEEE
Confidence            5677799 9999999999999998855 4554220011  11221                 22344332 2  589999


Q ss_pred             EecChhhHHHHHHHHHHcC-C-cEEEEecCCCChh
Q 019500          105 IYVPPPFAAAAILEAMEAE-L-DLVVCITEGIPQH  137 (340)
Q Consensus       105 i~vp~~~v~~~v~ea~~~G-v-k~vvi~t~Gf~e~  137 (340)
                      +++|+....+++++....- - ..++.++.|+...
T Consensus        79 l~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~  113 (341)
T PRK08229         79 VTVKSAATADAAAALAGHARPGAVVVSFQNGVRNA  113 (341)
T ss_pred             EEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence            9999999888887766542 2 2344567788643

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=93.27  E-value=0.49  Score=46.00  Aligned_cols=38  Identities=18%  Similarity=0.203  Sum_probs=30.6

Q ss_pred             ccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEe
Q 019500           35 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG   72 (340)
Q Consensus        35 ~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~   72 (340)
                      +.-|.-++.+|+|.|++|-.|+.+++.|.+.|+++++.
T Consensus         8 ~~~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~   45 (348)
T PRK15181          8 RTKLVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGL   45 (348)
T ss_pred             hhcccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEE
Confidence            33344555689999999999999999999999987744

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=93.27  E-value=0.25  Score=41.92  Aligned_cols=90  Identities=14%  Similarity=0.160  Sum_probs=57.0

Q ss_pred             EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce--ecCc-------------ccccCHHHhhccCCCcEEEEecCh
Q 019500           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--HLGL-------------PVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~--i~G~-------------p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      |+|+|+ |.+|...+..|.+.|+++.....++.. +.  ..|+             +.+.+-..... .++|++++++.+
T Consensus         1 I~I~G~-GaiG~~~a~~L~~~g~~V~l~~r~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~viv~vKa   77 (151)
T PF02558_consen    1 ILIIGA-GAIGSLYAARLAQAGHDVTLVSRSPRL-EAIKEQGLTITGPDGDETVQPPIVISAPSADA-GPYDLVIVAVKA   77 (151)
T ss_dssp             EEEEST-SHHHHHHHHHHHHTTCEEEEEESHHHH-HHHHHHCEEEEETTEEEEEEEEEEESSHGHHH-STESEEEE-SSG
T ss_pred             CEEECc-CHHHHHHHHHHHHCCCceEEEEccccH-HhhhheeEEEEecccceecccccccCcchhcc-CCCcEEEEEecc
Confidence            456799 889999999998888886544433310 11  1111             11111121111 269999999999


Q ss_pred             hhHHHHHHHHHHcCCc--EEEEecCCCChh
Q 019500          110 PFAAAAILEAMEAELD--LVVCITEGIPQH  137 (340)
Q Consensus       110 ~~v~~~v~ea~~~Gvk--~vvi~t~Gf~e~  137 (340)
                      ....++++.+...--+  .++.++.|+...
T Consensus        78 ~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~  107 (151)
T PF02558_consen   78 YQLEQALQSLKPYLDPNTTIVSLQNGMGNE  107 (151)
T ss_dssp             GGHHHHHHHHCTGEETTEEEEEESSSSSHH
T ss_pred             cchHHHHHHHhhccCCCcEEEEEeCCCCcH
Confidence            9999999986655433  578889998644

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=93.20  E-value=0.42  Score=47.04  Aligned_cols=87  Identities=15%  Similarity=0.153  Sum_probs=63.3

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCC---------ce-----------------ecC--cccc--cCH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG---------TE-----------------HLG--LPVF--NTV   91 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g---------~~-----------------i~G--~p~y--~sl   91 (340)
                      ++|+|.|. ||||+.+.+.+.+. .+++++..+|...-         ++                 +.|  ++++  +++
T Consensus         3 ikigInG~-GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~~   81 (334)
T PRK08955          3 IKVGINGF-GRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKAI   81 (334)
T ss_pred             eEEEEECc-CHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCCh
Confidence            68999999 99999999987765 57877655543110         11                 123  2233  257


Q ss_pred             HHhhccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500           92 AEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus        92 ~dip~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      ++++=. ++|+|+.|+......+.....++.|++.+++ |+
T Consensus        82 ~~~~w~-gvDiVle~tG~~~s~~~a~~hl~aGak~V~i-Sa  120 (334)
T PRK08955         82 ADTDWS-GCDVVIEASGVMKTKALLQAYLDQGVKRVVV-TA  120 (334)
T ss_pred             hhCCcc-CCCEEEEccchhhcHHHHHHHHHCCCEEEEE-CC
Confidence            777654 7999999999999999999999999998664 43

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=93.10  E-value=0.65  Score=45.78  Aligned_cols=91  Identities=10%  Similarity=0.068  Sum_probs=56.3

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-c------ee--cCcccccCHHHhhccCCCcEEEEecCh-
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T------EH--LGLPVFNTVAEAKAETKANASAIYVPP-  109 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~------~i--~G~p~y~sl~dip~~~~vDlavi~vp~-  109 (340)
                      .+..+|+|.|++|..|+.+++.|.+.|++++...+....- .      +.  ..+.-..++.++..  ++|.++-+... 
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~D~Vih~Aa~~   96 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTK--GVDHVFNLAADM   96 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHh--CCCEEEEccccc
Confidence            4566889999999999999999999999877443221100 0      00  11111122333343  58988877521 


Q ss_pred             ------------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          110 ------------------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       110 ------------------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                                        .....+++.|.+.+++.+|.+++
T Consensus        97 ~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS  137 (370)
T PLN02695         97 GGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS  137 (370)
T ss_pred             CCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence                              12345777788889988776665

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=92.94  E-value=0.6  Score=46.09  Aligned_cols=115  Identities=11%  Similarity=0.132  Sum_probs=78.1

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM  120 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~  120 (340)
                      ..+|.|+|. |+||+..++.+.+.|+.+++-=-+.+.. .+-.|..-|..+.|+.+. .+|+++.||.......++....
T Consensus        52 tl~IaIIGf-GnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcer-hpDvvLlctsilsiekilatyp  129 (480)
T KOG2380|consen   52 TLVIAIIGF-GNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCER-HPDVVLLCTSILSIEKILATYP  129 (480)
T ss_pred             ceEEEEEec-CcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhc-CCCEEEEEehhhhHHHHHHhcC
Confidence            445667799 9999999999999999877433344410 134678889999998875 6999999999999988887654


Q ss_pred             H--cCCcEEEEecCCCChhhHHHHHHHHhccCCcE----EEccC
Q 019500          121 E--AELDLVVCITEGIPQHDMVRVKAALNNQSKTR----LVGPN  158 (340)
Q Consensus       121 ~--~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir----viGPN  158 (340)
                      =  ..+..+++-..-..+-+...+.+.+-++..|.    +-||.
T Consensus       130 fqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPk  173 (480)
T KOG2380|consen  130 FQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPK  173 (480)
T ss_pred             chhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCC
Confidence            2  33445554444444445555555543444443    45776

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=92.86  E-value=0.59  Score=46.84  Aligned_cols=108  Identities=15%  Similarity=0.117  Sum_probs=58.2

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee-c-----------------CcccccC--HHHhhccCCCcE
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH-L-----------------GLPVFNT--VAEAKAETKANA  102 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i-~-----------------G~p~y~s--l~dip~~~~vDl  102 (340)
                      +|.|+|. |.+|...+..+. .|++++ ++|.+... +.+ .                 +.....+  .++...  +.|+
T Consensus         2 kI~VIGl-GyvGl~~A~~lA-~G~~Vi-gvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~--~ad~   76 (388)
T PRK15057          2 KITISGT-GYVGLSNGLLIA-QNHEVV-ALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYR--DADY   76 (388)
T ss_pred             EEEEECC-CHHHHHHHHHHH-hCCcEE-EEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhc--CCCE
Confidence            5677799 999988885555 588865 55543310 000 1                 1122122  445444  5899


Q ss_pred             EEEecChh-----------hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccC
Q 019500          103 SAIYVPPP-----------FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN  158 (340)
Q Consensus       103 avi~vp~~-----------~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPN  158 (340)
                      +++++|..           .+.++++...+..-+.+++..|=++....+++.+.+ ++.++.. +|.
T Consensus        77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~-~~~~v~~-~PE  141 (388)
T PRK15057         77 VIIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKY-RTENIIF-SPE  141 (388)
T ss_pred             EEEeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHh-hcCcEEE-Ccc
Confidence            99999964           444555555543223345555555544445555444 3444433 444

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=92.78  E-value=0.72  Score=42.54  Aligned_cols=111  Identities=15%  Similarity=0.110  Sum_probs=64.0

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC----Cc----------eecCcccccC-----HHHhhccCCC
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG----GT----------EHLGLPVFNT-----VAEAKAETKA  100 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~----g~----------~i~G~p~y~s-----l~dip~~~~v  100 (340)
                      .+..+|+|+|. |+.|+..++.|.+.|.++++..|.+..    |-          +..++..|+.     -+++.. .++
T Consensus        21 l~g~~vaIqGf-GnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~   98 (217)
T cd05211          21 LEGLTVAVQGL-GNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILG-LDV   98 (217)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCccccee-ccc
Confidence            34568889999 999999999999999988876554320    00          1123333331     123333 268


Q ss_pred             cEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCC
Q 019500          101 NASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC  159 (340)
Q Consensus       101 Dlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc  159 (340)
                      |+++-|.+....  .-+.+.+.++|.++-.+.+--..+..+   .+ ++.|+.++ |..
T Consensus        99 DVlipaA~~~~i--~~~~a~~l~a~~V~e~AN~p~t~~a~~---~L-~~~Gi~v~-Pd~  150 (217)
T cd05211          99 DIFAPCALGNVI--DLENAKKLKAKVVAEGANNPTTDEALR---IL-HERGIVVA-PDI  150 (217)
T ss_pred             cEEeeccccCcc--ChhhHhhcCccEEEeCCCCCCCHHHHH---HH-HHCCcEEE-ChH
Confidence            999988876643  334455667777553333321223222   22 45676554 653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=92.77  E-value=1.3  Score=41.71  Aligned_cols=64  Identities=19%  Similarity=0.244  Sum_probs=46.5

Q ss_pred             CCeEEEEeCCC--CCcchHHHHHHHHcCCeEEEeeCCCCC-Cc-----------eecCcccccCHHHhhccCCCcEEEEe
Q 019500           41 KNTRVICQGIT--GKNGTFHTEQAIEYGTKMVGGVTPKKG-GT-----------EHLGLPVFNTVAEAKAETKANASAIY  106 (340)
Q Consensus        41 ~~iaViVvGas--gk~G~~v~~~l~~~G~~vv~~VnP~~~-g~-----------~i~G~p~y~sl~dip~~~~vDlavi~  106 (340)
                      .+++||++..+  |++| .+++.|+++|+.-.+.|||+.. .+           -+.+.++|++|+|...  ++|+++-+
T Consensus         3 ~~i~iVLVep~~~gNIG-~vARaMKNfGl~eL~LV~Pr~~~~eeA~a~A~gA~dile~A~i~~tL~eAl~--d~~~v~aT   79 (242)
T COG0565           3 ENIRIVLVEPSHPGNIG-SVARAMKNFGLSELRLVNPRAGLDEEARALAAGARDILENAKIVDTLEEALA--DCDLVVAT   79 (242)
T ss_pred             CccEEEEEcCCCCccHH-HHHHHHHhCCcceEEEECCCCCCCHHHHHHhccchhhhccCeeecCHHHHhc--CCCEEEEe
Confidence            36788888874  4555 4678999999986669999873 11           1467788888888886  57777755


Q ss_pred             c
Q 019500          107 V  107 (340)
Q Consensus       107 v  107 (340)
                      +
T Consensus        80 t   80 (242)
T COG0565          80 T   80 (242)
T ss_pred             c
Confidence            4

>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function

Probab=92.77  E-value=0.73  Score=42.66  Aligned_cols=105  Identities=17%  Similarity=0.069  Sum_probs=67.5

Q ss_pred             CCCcchHHHHHHHHc-CCe-EEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEE-ecChhhHHHHHHHHHHcCCcEE
Q 019500           51 TGKNGTFHTEQAIEY-GTK-MVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAI-YVPPPFAAAAILEAMEAELDLV  127 (340)
Q Consensus        51 sgk~G~~v~~~l~~~-G~~-vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi-~vp~~~v~~~v~ea~~~Gvk~v  127 (340)
                      +|+.|....+++.++ .+. .+..++....-.++-..| ..-|.++++   .|++|. ..+|+...++.+.|.+.|++++
T Consensus         5 ~G~yGeR~~~~i~~~~~~~~~v~~~~~p~~l~efId~p-ee~Lp~i~~---~Dl~I~y~lHPDl~~~l~~~~~e~g~kav   80 (217)
T PF02593_consen    5 DGKYGERVIENIKNYFDFCRSVIVYEIPEDLPEFIDDP-EEYLPKIPE---ADLLIAYGLHPDLTYELPEIAKEAGVKAV   80 (217)
T ss_pred             eCcchHHHHHHHHhcCCCCceEEEEeCCccccccccCh-HHHccCCCC---CCEEEEeccCchhHHHHHHHHHHcCCCEE
Confidence            477899999999886 455 232444221102211112 112444553   799998 6799999999999999999996


Q ss_pred             EEecCCCChhh-HHHHHHHHhccCCcEEEccCCCC
Q 019500          128 VCITEGIPQHD-MVRVKAALNNQSKTRLVGPNCPG  161 (340)
Q Consensus       128 vi~t~Gf~e~~-~~~l~~~aar~~girviGPNc~G  161 (340)
                      |+ ..+-+..+ ..++.+.+ ++.|+.+.-|.-+=
T Consensus        81 Iv-p~~~~~~g~~~~lk~~~-e~~gi~~~~P~~~C  113 (217)
T PF02593_consen   81 IV-PSESPKPGLRRQLKKQL-EEFGIEVEFPKPFC  113 (217)
T ss_pred             EE-ecCCCccchHHHHHHHH-HhcCceeecCcccc
Confidence            54 44444422 33455555 78999999888443

>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=92.50  E-value=0.32  Score=46.67  Aligned_cols=107  Identities=15%  Similarity=0.244  Sum_probs=68.2

Q ss_pred             CcCCeEEEEeCCCCCcchHHHHHHHHc--CCeEEEeeCCCCCC-c---eecCcccccCHHHhhccCCCcEEEEecChhh-
Q 019500           39 VDKNTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPF-  111 (340)
Q Consensus        39 ~p~~iaViVvGasgk~G~~v~~~l~~~--G~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~-  111 (340)
                      .||  +|+|+|.  +.|..-...+...  +|++.....-.... .   .-.|+|.|.+++++|+  .+|++-+.+-... 
T Consensus         3 ~pk--sVvV~Gt--rFGq~Ylaaf~~~~~~~eLaGiLaqGSeRSRaLAh~~GVply~~~eelpd--~idiACVvVrsai~   76 (361)
T COG4693           3 DPK--SVVVCGT--RFGQFYLAAFAAAPPRFELAGILAQGSERSRALAHRLGVPLYCEVEELPD--DIDIACVVVRSAIV   76 (361)
T ss_pred             CCc--eEEEecc--hHHHHHHHHhccCCCCceeehhhhcccHHHHHHHHHhCCccccCHhhCCC--CCCeEEEEEeeeee
Confidence            355  5677784  6787766655543  77766333221100 1   2489999999999998  6999988775543 


Q ss_pred             ---HHHHHHHHHHcCCcEEEEecCC-CChhhHHHHHHHHhccCCcEEE
Q 019500          112 ---AAAAILEAMEAELDLVVCITEG-IPQHDMVRVKAALNNQSKTRLV  155 (340)
Q Consensus       112 ---v~~~v~ea~~~Gvk~vvi~t~G-f~e~~~~~l~~~aar~~girvi  155 (340)
                         -.+..+..+++||+.   +++. .-.+|..++.+.+ ++.|-+..
T Consensus        77 Gg~Gs~larall~RGi~V---lqEHPl~p~di~~l~rlA-~rqG~~y~  120 (361)
T COG4693          77 GGQGSALARALLARGIHV---LQEHPLHPRDIQDLLRLA-ERQGRRYL  120 (361)
T ss_pred             cCCcHHHHHHHHHcccHH---HHhCCCCHHHHHHHHHHH-HHhCcEEE
Confidence               366788888889886   3332 3345666666655 55665543

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=92.42  E-value=0.56  Score=48.85  Aligned_cols=68  Identities=21%  Similarity=0.326  Sum_probs=49.0

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc--eecCcccccCHHHhhccCCCcEEEEecChh-hHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAI  116 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~--~i~G~p~y~sl~dip~~~~vDlavi~vp~~-~v~~~v  116 (340)
                      .|.|+|. |++|+.+++.+..+|++++ .+||....+  .-.|++.. +++++..  ..|++++++|.. ....++
T Consensus       142 tvgIiG~-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~g~~~~-~l~ell~--~aDiV~l~lP~t~~t~~li  212 (526)
T PRK13581        142 TLGIIGL-GRIGSEVAKRAKAFGMKVI-AYDPYISPERAAQLGVELV-SLDELLA--RADFITLHTPLTPETRGLI  212 (526)
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCEEE-EECCCCChhHHHhcCCEEE-cHHHHHh--hCCEEEEccCCChHhhcCc
Confidence            4566699 9999999999999999866 678743101  23455544 8999987  589999999974 333333

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=92.38  E-value=2.9  Score=39.05  Aligned_cols=30  Identities=13%  Similarity=0.237  Sum_probs=24.0

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcC--CeEEEeeC
Q 019500           44 RVICQGITGKNGTFHTEQAIEYG--TKMVGGVT   74 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G--~~vv~~Vn   74 (340)
                      +|+|.|++|.+|+.+++.|.+.|  ++++ .++
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~-~~~   32 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVI-VLD   32 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEE-Eec
Confidence            36788999999999999998876  6666 444

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=92.33  E-value=0.34  Score=41.85  Aligned_cols=54  Identities=19%  Similarity=0.326  Sum_probs=42.6

Q ss_pred             HHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCCCC
Q 019500          223 FVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIAGLTAP  276 (340)
Q Consensus       223 ~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvvlk~Grs~~  276 (340)
                      +.+.|+.+.+||+++.|++++.+.|.....+.++.++++ .+|||+++--|....
T Consensus        16 l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~~s   70 (161)
T cd00394          16 LAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAAS   70 (161)
T ss_pred             HHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhCCCEEEEECChhHH
Confidence            566777888999999999999987666667777777765 569999998876543

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=92.31  E-value=0.54  Score=42.78  Aligned_cols=37  Identities=27%  Similarity=0.383  Sum_probs=29.8

Q ss_pred             CcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (340)
Q Consensus        39 ~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~   77 (340)
                      .-+.-+|+|+|+ |++|...++.|.+.|.++. .|+|..
T Consensus         7 ~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~-VIs~~~   43 (202)
T PRK06718          7 DLSNKRVVIVGG-GKVAGRRAITLLKYGAHIV-VISPEL   43 (202)
T ss_pred             EcCCCEEEEECC-CHHHHHHHHHHHHCCCeEE-EEcCCC
Confidence            334557888899 9999999999999998765 788865

>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=92.22  E-value=0.56  Score=43.15  Aligned_cols=91  Identities=16%  Similarity=0.195  Sum_probs=64.2

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcCC----eEEEeeCCCCCCc---eecCcccccC----HHHhhccCCCcEEEEecC
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYGT----KMVGGVTPKKGGT---EHLGLPVFNT----VAEAKAETKANASAIYVP  108 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G~----~vv~~VnP~~~g~---~i~G~p~y~s----l~dip~~~~vDlavi~vp  108 (340)
                      ++..+|.|+|- |++|+-++-.+++.|-    ...-++||..+|-   .-.|++.-..    |-.+|+..++|++..++.
T Consensus         2 ~sk~kvaiigs-gni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraarlgv~tt~egv~~ll~~p~~~di~lvfdats   80 (310)
T COG4569           2 SSKRKVAIIGS-GNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAARLGVATTHEGVIGLLNMPEFADIDLVFDATS   80 (310)
T ss_pred             CCcceEEEEcc-CcccHHHHHHHHhcCCcccceeEEccCCCccHHHHHHhcCCcchhhHHHHHHhCCCCCCcceEEeccc
Confidence            45667888896 9999887666665542    2333799987542   2356654432    444565456889999999


Q ss_pred             hhhHHHHHHHHHHcCCcEEEEecC
Q 019500          109 PPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       109 ~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      +-.+.+......+.|++. +-+|+
T Consensus        81 a~~h~~~a~~~ae~gi~~-idltp  103 (310)
T COG4569          81 AGAHVKNAAALAEAGIRL-IDLTP  103 (310)
T ss_pred             cchhhcchHhHHhcCCce-eecch
Confidence            999999999999999998 44564

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=91.92  E-value=1.2  Score=42.67  Aligned_cols=29  Identities=28%  Similarity=0.335  Sum_probs=25.4

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEe
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGG   72 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~   72 (340)
                      +|+|.|++|..|+.+++.|.+.|++++..
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~   30 (338)
T PRK10675          2 RVLVTGGSGYIGSHTCVQLLQNGHDVVIL   30 (338)
T ss_pred             eEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence            57889999999999999999999997643

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=91.74  E-value=0.71  Score=43.72  Aligned_cols=83  Identities=19%  Similarity=0.129  Sum_probs=51.6

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce---ecCcccc------cCHHHhhccCCCcEEEEecChhh---
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVF------NTVAEAKAETKANASAIYVPPPF---  111 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~---i~G~p~y------~sl~dip~~~~vDlavi~vp~~~---  111 (340)
                      +|.|.|.++- |+.+++.|.+.|+++++-+--.++.+.   ..+.+++      .++.+...++++|++|++++|-+   
T Consensus         2 ~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~i   80 (256)
T TIGR00715         2 TVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHPFAAQI   80 (256)
T ss_pred             eEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHHH
Confidence            5778899775 999999999999986654332221111   1123333      23544444456888888887743   


Q ss_pred             HHHHHHHHHHcCCcEE
Q 019500          112 AAAAILEAMEAELDLV  127 (340)
Q Consensus       112 v~~~v~ea~~~Gvk~v  127 (340)
                      ...+.+.|.+.|++.+
T Consensus        81 s~~a~~a~~~~~ipyl   96 (256)
T TIGR00715        81 TTNATAVCKELGIPYV   96 (256)
T ss_pred             HHHHHHHHHHhCCcEE
Confidence            3456666777777764

This enzyme was found to be a monomer by gel filtration.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=91.67  E-value=0.6  Score=39.49  Aligned_cols=114  Identities=15%  Similarity=0.123  Sum_probs=61.2

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce-e----------cCcccccCHHHhhccCCCcEEEEecChhhH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-H----------LGLPVFNTVAEAKAETKANASAIYVPPPFA  112 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~-i----------~G~p~y~sl~dip~~~~vDlavi~vp~~~v  112 (340)
                      +|+|+|+ |.+|..++++|...|+.-+..+|+..-..+ +          .|.+--..+.+...+..+++-+-..+....
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~   79 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS   79 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence            3677899 899999999999999875558887642111 1          122111112222222234444444433322


Q ss_pred             HHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCc
Q 019500          113 AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGV  162 (340)
Q Consensus       113 ~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi  162 (340)
                      .+...+.. .+... |+.+... ......+.+.+ +++++.++...+.|.
T Consensus        80 ~~~~~~~~-~~~di-Vi~~~d~-~~~~~~l~~~~-~~~~i~~i~~~~~g~  125 (143)
T cd01483          80 EDNLDDFL-DGVDL-VIDAIDN-IAVRRALNRAC-KELGIPVIDAGGLGL  125 (143)
T ss_pred             hhhHHHHh-cCCCE-EEECCCC-HHHHHHHHHHH-HHcCCCEEEEcCCCc
Confidence            22222222 24554 3334333 33344555665 788888887777663

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=91.65  E-value=0.81  Score=42.42  Aligned_cols=85  Identities=20%  Similarity=0.121  Sum_probs=49.9

Q ss_pred             EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee--cCcccc--cCHHHhhccCCCcEEEEecChh---------
Q 019500           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVF--NTVAEAKAETKANASAIYVPPP---------  110 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i--~G~p~y--~sl~dip~~~~vDlavi~vp~~---------  110 (340)
                      |+|.|++|..|+.+++.|.+.|++++.. +.+... ...  .++..+  ..+.+...  ++|.++-+....         
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~Vvh~a~~~~~~~~~~~~   77 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTIL-TRSPPAGANTKWEGYKPWAPLAESEALE--GADAVINLAGEPIADKRWTEE   77 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEE-eCCCCCCCcccceeeecccccchhhhcC--CCCEEEECCCCCcccccCCHH
Confidence            4578999999999999999999997643 322210 111  111111  12222222  589888776321         


Q ss_pred             -----------hHHHHHHHHHHcCCc-EEEEecC
Q 019500          111 -----------FAAAAILEAMEAELD-LVVCITE  132 (340)
Q Consensus       111 -----------~v~~~v~ea~~~Gvk-~vvi~t~  132 (340)
                                 .+..+++.|.+.|++ .+++.++
T Consensus        78 ~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S  111 (292)
T TIGR01777        78 RKQEIRDSRIDTTRALVEAIAAAEQKPKVFISAS  111 (292)
T ss_pred             HHHHHHhcccHHHHHHHHHHHhcCCCceEEEEee
Confidence                       145566777788874 4455454

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=91.62  E-value=0.95  Score=47.70  Aligned_cols=86  Identities=17%  Similarity=0.289  Sum_probs=52.7

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEee-CCCCCCcee-----------cC------cccc-------cCHHHhhccC
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGGTEH-----------LG------LPVF-------NTVAEAKAET   98 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~V-nP~~~g~~i-----------~G------~p~y-------~sl~dip~~~   98 (340)
                      .|+|.|++|.+|+.+++.|.+.|++++..+ |+... ..+           .|      +.++       .++.+...  
T Consensus        82 vVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl-~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLg--  158 (576)
T PLN03209         82 LAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRA-ESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALG--  158 (576)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHH-HHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhc--
Confidence            367889999999999999999999866432 22110 000           01      1111       12333333  


Q ss_pred             CCcEEEEecChh----------------hHHHHHHHHHHcCCcEEEEecC
Q 019500           99 KANASAIYVPPP----------------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus        99 ~vDlavi~vp~~----------------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      ++|++|.+....                ....+++.|.+.|++.+|++++
T Consensus       159 giDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSS  208 (576)
T PLN03209        159 NASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTS  208 (576)
T ss_pred             CCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence            589888765321                2455677777788888777776

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=91.62  E-value=1.5  Score=40.49  Aligned_cols=81  Identities=17%  Similarity=0.203  Sum_probs=54.5

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-c----eecCcccc-cCHHHhhccCCCcEEEEecChhhHHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T----EHLGLPVF-NTVAEAKAETKANASAIYVPPPFAAAAIL  117 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~----~i~G~p~y-~sl~dip~~~~vDlavi~vp~~~v~~~v~  117 (340)
                      .+.|+|+ |++|..+.+.+.+.|++++.. +.+... .    +..+..+- .+.+|..+  ..|++++++|-+.++++++
T Consensus         3 ~~~i~Gt-GniG~alA~~~a~ag~eV~ig-s~r~~~~~~a~a~~l~~~i~~~~~~dA~~--~aDVVvLAVP~~a~~~v~~   78 (211)
T COG2085           3 IIAIIGT-GNIGSALALRLAKAGHEVIIG-SSRGPKALAAAAAALGPLITGGSNEDAAA--LADVVVLAVPFEAIPDVLA   78 (211)
T ss_pred             EEEEecc-ChHHHHHHHHHHhCCCeEEEe-cCCChhHHHHHHHhhccccccCChHHHHh--cCCEEEEeccHHHHHhHHH
Confidence            3455677 999999999999999997633 222210 0    12222222 24555554  4899999999999999999


Q ss_pred             HHHH-cCCcEEE
Q 019500          118 EAME-AELDLVV  128 (340)
Q Consensus       118 ea~~-~Gvk~vv  128 (340)
                      +..+ .+=|.+|
T Consensus        79 ~l~~~~~~KIvI   90 (211)
T COG2085          79 ELRDALGGKIVI   90 (211)
T ss_pred             HHHHHhCCeEEE
Confidence            9987 3535444

>PLN02928 oxidoreductase family protein

Probab=91.62  E-value=1.4  Score=43.52  Aligned_cols=62  Identities=13%  Similarity=0.107  Sum_probs=45.2

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceec---------------CcccccCHHHhhccCCCcEEEEec
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL---------------GLPVFNTVAEAKAETKANASAIYV  107 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~---------------G~p~y~sl~dip~~~~vDlavi~v  107 (340)
                      .+|.|+|. |++|+.+++.+..+|++++ .+||........               +. -+.+++++..  ..|++++++
T Consensus       160 ktvGIiG~-G~IG~~vA~~l~afG~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~--~aDiVvl~l  234 (347)
T PLN02928        160 KTVFILGY-GAIGIELAKRLRPFGVKLL-ATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAG--EADIVVLCC  234 (347)
T ss_pred             CEEEEECC-CHHHHHHHHHHhhCCCEEE-EECCCCChhhhhhhccccccccccccccC-cccCHHHHHh--hCCEEEECC
Confidence            35667799 9999999999999999876 677752101100               11 3568999986  489999999


Q ss_pred             Ch
Q 019500          108 PP  109 (340)
Q Consensus       108 p~  109 (340)
                      |-
T Consensus       235 Pl  236 (347)
T PLN02928        235 TL  236 (347)
T ss_pred             CC
Confidence            84

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=91.60  E-value=0.61  Score=38.33  Aligned_cols=73  Identities=15%  Similarity=0.080  Sum_probs=45.2

Q ss_pred             EEEeCCCCCcchHHHHHHHHc-CCeEEEeeC-CCCCCcee---cC-cc--cccCH--HHhhccCCCcEEEEecChhhHHH
Q 019500           45 VICQGITGKNGTFHTEQAIEY-GTKMVGGVT-PKKGGTEH---LG-LP--VFNTV--AEAKAETKANASAIYVPPPFAAA  114 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~-G~~vv~~Vn-P~~~g~~i---~G-~p--~y~sl--~dip~~~~vDlavi~vp~~~v~~  114 (340)
                      +.++|++|.+|+.+++.+.+. ++++++.+. ++..++..   .+ +.  .+..+  .++.. .+.|++++++|++.+.+
T Consensus         2 i~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~DvV~~~~~~~~~~~   80 (122)
T smart00859        2 VAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEE-LAVDIVFLALPHGVSKE   80 (122)
T ss_pred             EEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhh-cCCCEEEEcCCcHHHHH
Confidence            567799899999999988885 888665533 32212221   11 11  11111  22221 25899999999999999


Q ss_pred             HHHH
Q 019500          115 AILE  118 (340)
Q Consensus       115 ~v~e  118 (340)
                      .+..
T Consensus        81 ~~~~   84 (122)
T smart00859       81 IAPL   84 (122)
T ss_pred             HHHH
Confidence            7653

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=91.60  E-value=0.4  Score=46.38  Aligned_cols=79  Identities=19%  Similarity=0.229  Sum_probs=52.0

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCccc--ccCHHHhhccCCCcEEEEecChhhHHH
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPV--FNTVAEAKAETKANASAIYVPPPFAAA  114 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~---i~G~p~--y~sl~dip~~~~vDlavi~vp~~~v~~  114 (340)
                      ...+|+|+|+ |.+|..+++.+...|...+..+|+.... .+   -.|..+  +.++.+...  ..|+++.++|.....+
T Consensus       177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~--~aDvVi~at~~~~~~~  253 (311)
T cd05213         177 KGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLN--EADVVISATGAPHYAK  253 (311)
T ss_pred             cCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHh--cCCEEEECCCCCchHH
Confidence            3556888899 9999999999988776655578876411 11   123222  223444433  4899999999877756


Q ss_pred             HHHHHHHc
Q 019500          115 AILEAMEA  122 (340)
Q Consensus       115 ~v~ea~~~  122 (340)
                      .++++.+.
T Consensus       254 ~~~~~~~~  261 (311)
T cd05213         254 IVERAMKK  261 (311)
T ss_pred             HHHHHHhh
Confidence            66665544

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=91.58  E-value=0.64  Score=42.97  Aligned_cols=84  Identities=17%  Similarity=0.134  Sum_probs=54.8

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce----------ecCccccc-CHHHhhccCCCcEEEEecChhh
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE----------HLGLPVFN-TVAEAKAETKANASAIYVPPPF  111 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~----------i~G~p~y~-sl~dip~~~~vDlavi~vp~~~  111 (340)
                      +++|+|+ |+.|+.+++.|.+.|++++ .|+.+..- .+          +.|-...+ .|.++-- .+.|+++.++..+.
T Consensus         2 ~iiIiG~-G~vG~~va~~L~~~g~~Vv-~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi-~~aD~vva~t~~d~   78 (225)
T COG0569           2 KIIIIGA-GRVGRSVARELSEEGHNVV-LIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGI-DDADAVVAATGNDE   78 (225)
T ss_pred             EEEEECC-cHHHHHHHHHHHhCCCceE-EEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCC-CcCCEEEEeeCCCH
Confidence            5788899 9999999999999999966 44332210 11          11222222 2555532 26899999999877


Q ss_pred             HHHHHHHHHH--cCCcEEEEe
Q 019500          112 AAAAILEAME--AELDLVVCI  130 (340)
Q Consensus       112 v~~~v~ea~~--~Gvk~vvi~  130 (340)
                      +--++-..+.  .|++.+|.-
T Consensus        79 ~N~i~~~la~~~~gv~~viar   99 (225)
T COG0569          79 VNSVLALLALKEFGVPRVIAR   99 (225)
T ss_pred             HHHHHHHHHHHhcCCCcEEEE
Confidence            7665555553  489887643

>PLN02214 cinnamoyl-CoA reductase

Probab=91.56  E-value=1.5  Score=42.62  Aligned_cols=90  Identities=20%  Similarity=0.200  Sum_probs=55.8

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC-CCCCC-----------cee----cCcccccCHHHhhccCCCcEEE
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGG-----------TEH----LGLPVFNTVAEAKAETKANASA  104 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn-P~~~g-----------~~i----~G~p~y~sl~dip~~~~vDlav  104 (340)
                      +..+|+|.|++|-.|+.+++.|.+.|++++..+. +....           ..+    ..+.-..+++++..  .+|.++
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~Vi   86 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAID--GCDGVF   86 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHh--cCCEEE
Confidence            3446888999999999999999999998764432 21100           000    11111223444444  488888


Q ss_pred             EecCh-------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          105 IYVPP-------------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       105 i~vp~-------------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      -+..+             .....+++.|.+.|++.+|.+++
T Consensus        87 h~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS  127 (342)
T PLN02214         87 HTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSS  127 (342)
T ss_pred             EecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecc
Confidence            77632             12345677888889987776665

>COG1810 Uncharacterized protein conserved in archaea [Function unknown]

Probab=91.56  E-value=1.7  Score=40.16  Aligned_cols=110  Identities=14%  Similarity=0.106  Sum_probs=69.1

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCe--EEEeeCC-CCCCceecCcccccCHHHhhccCCCcEEEEe-cChhhHHHHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTK--MVGGVTP-KKGGTEHLGLPVFNTVAEAKAETKANASAIY-VPPPFAAAAILE  118 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~--vv~~VnP-~~~g~~i~G~p~y~sl~dip~~~~vDlavi~-vp~~~v~~~v~e  118 (340)
                      ++|+|+.- |..|....+|+...+|.  +++...+ ......+.- | ..-|..+|   +.|++|-. .+|+....+.+.
T Consensus         2 mki~vlt~-g~yG~R~~~nl~~~~f~~~~v~v~~~Pe~~~~fie~-P-~~~Lp~~~---e~Di~va~~lHPDl~~~L~e~   75 (224)
T COG1810           2 MKILVLTD-GEYGKRAVNNLACKGFKNQFVAVKEYPEELPDFIEE-P-EDLLPKLP---EADIVVAYGLHPDLLLALPEK   75 (224)
T ss_pred             cEEEEEee-ccchHHHHHhHhhhccccceEEEEeccccccchhhC-H-HHhcCCCC---CCCEEEEeccCccHHHHHHHH
Confidence            56777776 89999999999876653  5544333 221111110 0 11122223   48999987 799999999999


Q ss_pred             HHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCC
Q 019500          119 AMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCP  160 (340)
Q Consensus       119 a~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~  160 (340)
                      +.+.|++++| +.++-++.-..+|.+.+ .+.|+.+.-|.-+
T Consensus        76 ~~~~~~~alI-vp~~~~~g~rkqL~~~~-~~~g~e~~~p~p~  115 (224)
T COG1810          76 AAEGGVKALI-VPAEPPEGLRKQLKEFC-EELGVEFEAPEPF  115 (224)
T ss_pred             HHhCCccEEE-EecCCChhHHHHHHHHh-hhcceeeecCCcc
Confidence            9999999966 44444432244565555 6778887665543

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=91.55  E-value=0.61  Score=46.01  Aligned_cols=89  Identities=17%  Similarity=0.163  Sum_probs=60.6

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCc---------eecC---------------------ccccc
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT---------EHLG---------------------LPVFN   89 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~---------~i~G---------------------~p~y~   89 (340)
                      +.++|.|+|+ |++|+.+.+.+.+. +.++++..+|...-+         ++.|                     ++++.
T Consensus         4 ~~lrVaI~G~-GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~   82 (338)
T PLN02358          4 KKIRIGINGF-GRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   82 (338)
T ss_pred             CceEEEEEee-cHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEE
Confidence            3579999999 99999999987764 677776555532101         1111                     11111


Q ss_pred             --CHHHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEec
Q 019500           90 --TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCIT  131 (340)
Q Consensus        90 --sl~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t  131 (340)
                        +.+++|= +.++|+|+.|+......+.+...+++|++.++ ++
T Consensus        83 ~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~Vi-iS  126 (338)
T PLN02358         83 IRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVV-IS  126 (338)
T ss_pred             cCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEE-eC
Confidence              1224431 13699999999999999999999999998855 45

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=91.55  E-value=1.1  Score=45.43  Aligned_cols=67  Identities=22%  Similarity=0.284  Sum_probs=40.6

Q ss_pred             cCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee-cCcc----------------ccc-CHHHhhccC
Q 019500           38 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH-LGLP----------------VFN-TVAEAKAET   98 (340)
Q Consensus        38 f~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i-~G~p----------------~y~-sl~dip~~~   98 (340)
                      |.-..++|.|+|. |.+|.-.+.++.+ +++++ ++|.+... +.+ .|..                .+. +.+. ..  
T Consensus         2 ~~~~~mkI~vIGl-GyvGlpmA~~la~-~~~V~-g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~-~~--   75 (425)
T PRK15182          2 FGIDEVKIAIIGL-GYVGLPLAVEFGK-SRQVV-GFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEK-IK--   75 (425)
T ss_pred             CCCCCCeEEEECc-CcchHHHHHHHhc-CCEEE-EEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHH-Hc--
Confidence            3334467888899 9999988888766 68855 54443310 111 2221                222 3333 33  


Q ss_pred             CCcEEEEecChh
Q 019500           99 KANASAIYVPPP  110 (340)
Q Consensus        99 ~vDlavi~vp~~  110 (340)
                      +.|++++|+|..
T Consensus        76 ~advvii~Vptp   87 (425)
T PRK15182         76 ECNFYIITVPTP   87 (425)
T ss_pred             CCCEEEEEcCCC
Confidence            589999999965

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=91.50  E-value=0.63  Score=45.74  Aligned_cols=124  Identities=19%  Similarity=0.258  Sum_probs=79.3

Q ss_pred             CcCCeEEEEeCCCCCcchHHHHHHHHcCCe-EEEeeCCCCC-------CceecCcccc-c-CHHHhhccCCCcEEEEecC
Q 019500           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKG-------GTEHLGLPVF-N-TVAEAKAETKANASAIYVP  108 (340)
Q Consensus        39 ~p~~iaViVvGasgk~G~~v~~~l~~~G~~-vv~~VnP~~~-------g~~i~G~p~y-~-sl~dip~~~~vDlavi~vp  108 (340)
                      +++..-++|.||+|-.|..+++.+...|.+ .+++=|+.+-       |.+..-.|+. + .++++.+  ..++++=|+-
T Consensus         3 ~e~e~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~--~~~VVlncvG   80 (382)
T COG3268           3 MEREYDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLGPEAAVFPLGVPAALEAMAS--RTQVVLNCVG   80 (382)
T ss_pred             CCcceeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcCccccccCCCCHHHHHHHHh--cceEEEeccc
Confidence            355566788999999999999999988876 4444333210       1111122333 2 3556655  5899999998


Q ss_pred             h--hhHHHHHHHHHHcCCcEEEEecCCCC-hhhHHHH-HHHHhccCCcEEEccCCCCccc-CCCc
Q 019500          109 P--PFAAAAILEAMEAELDLVVCITEGIP-QHDMVRV-KAALNNQSKTRLVGPNCPGVIK-PGEC  168 (340)
Q Consensus       109 ~--~~v~~~v~ea~~~Gvk~vvi~t~Gf~-e~~~~~l-~~~aar~~girviGPNc~Gi~~-p~~~  168 (340)
                      |  .....+++.|++.|.+.+ -+|.-+. -+....+ .+.+ ++.|++|+  +|-||=+ |..+
T Consensus        81 Pyt~~g~plv~aC~~~GTdY~-DiTGEi~~fe~~i~~yh~~A-~~~Ga~Ii--~~cGFDsIPsDl  141 (382)
T COG3268          81 PYTRYGEPLVAACAAAGTDYA-DITGEIMFFENSIDLYHAQA-ADAGARII--PGCGFDSIPSDL  141 (382)
T ss_pred             cccccccHHHHHHHHhCCCee-eccccHHHHHHHHHHHHHHH-HhcCCEEe--ccCCCCcCccch
Confidence            7  455789999999999984 3454221 0222333 3333 78999999  7888743 4433

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=91.48  E-value=0.49  Score=49.09  Aligned_cols=65  Identities=14%  Similarity=0.086  Sum_probs=42.5

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEE-EeeCCCCCCc---e--------e-cC-------------cccccCHHHhhcc
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGT---E--------H-LG-------------LPVFNTVAEAKAE   97 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv-~~VnP~~~g~---~--------i-~G-------------~p~y~sl~dip~~   97 (340)
                      +|.|+|+ |.||+.++.++.+.|++++ +-++|..-..   .        + .|             +..-.+++++.  
T Consensus         7 kV~VIGa-G~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~--   83 (503)
T TIGR02279         7 TVAVIGA-GAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA--   83 (503)
T ss_pred             EEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC--
Confidence            3566699 9999999999999999854 3344332100   0        0 12             23455777764  


Q ss_pred             CCCcEEEEecChhhH
Q 019500           98 TKANASAIYVPPPFA  112 (340)
Q Consensus        98 ~~vDlavi~vp~~~v  112 (340)
                       +.|++|-++|.+..
T Consensus        84 -~aDlVIEav~E~~~   97 (503)
T TIGR02279        84 -DAGLVIEAIVENLE   97 (503)
T ss_pred             -CCCEEEEcCcCcHH
Confidence             48999999997443

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=91.47  E-value=0.43  Score=43.63  Aligned_cols=56  Identities=29%  Similarity=0.417  Sum_probs=43.0

Q ss_pred             CCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC---CCCCEEEEEeCCCCC
Q 019500          221 TNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG---TEKPIVAFIAGLTAP  276 (340)
Q Consensus       221 v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r---~~KPVvvlk~Grs~~  276 (340)
                      -++.+.|+.+.+||++++|++.+++.|.......++.++++   .+||||++--|-...
T Consensus        28 ~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~a~s   86 (214)
T cd07022          28 EGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGLAAS   86 (214)
T ss_pred             HHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCchhh
Confidence            45677788889999999999999987755555566666554   369999999885443

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=91.33  E-value=0.96  Score=42.10  Aligned_cols=82  Identities=17%  Similarity=0.154  Sum_probs=51.1

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChh-------------
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP-------------  110 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~-------------  110 (340)
                      +|+|.|++|..|+.+++.|.+.|++++ .++...  .+   +.-..++.++.+..++|.++-+....             
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~-~~~r~~--~d---~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~   74 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVV-ALTSSQ--LD---LTDPEALERLLRAIRPDAVVNTAAYTDVDGAESDPEKAF   74 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEE-EeCCcc--cC---CCCHHHHHHHHHhCCCCEEEECCccccccccccCHHHHH
Confidence            367889999999999999999999876 444332  11   22223455555433579988766321             


Q ss_pred             -----hHHHHHHHHHHcCCcEEEEecC
Q 019500          111 -----FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       111 -----~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                           ....+++.|.+.+.+. |.+++
T Consensus        75 ~~n~~~~~~l~~~~~~~~~~~-v~~Ss  100 (287)
T TIGR01214        75 AVNALAPQNLARAAARHGARL-VHIST  100 (287)
T ss_pred             HHHHHHHHHHHHHHHHcCCeE-EEEee
Confidence                 1344555666677654 44454

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK06813 homoserine dehydrogenase; Validated

Probab=91.30  E-value=1.3  Score=43.78  Aligned_cols=115  Identities=16%  Similarity=0.190  Sum_probs=64.9

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHH--------cCCe--EEEeeCCCCCCceecCccc---------------c-c-CHHHh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIE--------YGTK--MVGGVTPKKGGTEHLGLPV---------------F-N-TVAEA   94 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~--------~G~~--vv~~VnP~~~g~~i~G~p~---------------y-~-sl~di   94 (340)
                      .++|+++|. |..|+.+++.|.+        +|.+  +++..|.+..-..-.|++.               | . +..++
T Consensus         2 ~i~I~liG~-G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~   80 (346)
T PRK06813          2 KIKVVLSGY-GTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEER   80 (346)
T ss_pred             eeEEEEEec-ChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHH
Confidence            468889998 9999888876542        3443  5555554321000112211               1 1 11122


Q ss_pred             h-ccCCCcEEEEecCh-----hhHHHHHHHHHHcCCcEEEEecCC--CChhhHHHHHHHHhccCCcEEEccCCCC
Q 019500           95 K-AETKANASAIYVPP-----PFAAAAILEAMEAELDLVVCITEG--IPQHDMVRVKAALNNQSKTRLVGPNCPG  161 (340)
Q Consensus        95 p-~~~~vDlavi~vp~-----~~v~~~v~ea~~~Gvk~vvi~t~G--f~e~~~~~l~~~aar~~girviGPNc~G  161 (340)
                      . .+.++|++|.++|.     +...+.+++++++|++. |  |+.  .-.....+|.+.+ +++|..+.=--+.|
T Consensus        81 ~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hV-V--TANK~~la~~~~eL~~lA-~~~g~~~~yEasVg  151 (346)
T PRK06813         81 ATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDI-V--AISKGALVTNWREINEAA-KIANVRIRYSGATA  151 (346)
T ss_pred             hcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeE-E--cCCcHHHhccHHHHHHHH-HHcCCeEEEeeeee
Confidence            1 11148999999986     45677889999999986 2  442  1112235666665 78887766333333

>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=91.24  E-value=0.92  Score=44.71  Aligned_cols=88  Identities=13%  Similarity=0.112  Sum_probs=63.2

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCC---------ce-----------------ecC--cccc--cCH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG---------TE-----------------HLG--LPVF--NTV   91 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g---------~~-----------------i~G--~p~y--~sl   91 (340)
                      ++|.|.|. |++|+.+.|.+.+. ++++++.-+|...-         ++                 +.|  +++|  ++.
T Consensus         3 ~ki~INGf-GRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~dp   81 (337)
T PTZ00023          3 VKLGINGF-GRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKDP   81 (337)
T ss_pred             eEEEEECc-ChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCCh
Confidence            58899999 99999999987654 57777433332100         11                 233  3455  368


Q ss_pred             HHhh-ccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500           92 AEAK-AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus        92 ~dip-~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      +++| .+.++|+|+.|+......+.....++.|++.++ +|+
T Consensus        82 ~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~-iSa  122 (337)
T PTZ00023         82 AAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVI-MSA  122 (337)
T ss_pred             hhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEE-eCC
Confidence            8888 234799999999999999999999999999855 555

>PRK08223 hypothetical protein; Validated

Probab=91.13  E-value=1.2  Score=43.08  Aligned_cols=117  Identities=15%  Similarity=0.046  Sum_probs=62.9

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCccccc-----------CHHHhhccCCCcEEEEecChh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN-----------TVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~-----------sl~dip~~~~vDlavi~vp~~  110 (340)
                      ..+|+|+|+ |..|..++.+|...|..-+..+|...-..+-.....+-           ..++-..+.++++=|...+..
T Consensus        27 ~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~  105 (287)
T PRK08223         27 NSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEG  105 (287)
T ss_pred             cCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence            445777799 88999999999999987555777654211111111111           112222222455555555544


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCC
Q 019500          111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG  161 (340)
Q Consensus       111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~G  161 (340)
                      ...+.+++.++ +...++-.+..|+-+....+-+.| +++|+.++-..+.|
T Consensus       106 l~~~n~~~ll~-~~DlVvD~~D~~~~~~r~~ln~~c-~~~~iP~V~~~~~g  154 (287)
T PRK08223        106 IGKENADAFLD-GVDVYVDGLDFFEFDARRLVFAAC-QQRGIPALTAAPLG  154 (287)
T ss_pred             cCccCHHHHHh-CCCEEEECCCCCcHHHHHHHHHHH-HHcCCCEEEEeccC
Confidence            44445555553 566654333333222233344444 77888877666655

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=90.96  E-value=1.3  Score=41.56  Aligned_cols=81  Identities=17%  Similarity=0.120  Sum_probs=55.6

Q ss_pred             EeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecC-----------hh-----
Q 019500           47 CQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVP-----------PP-----  110 (340)
Q Consensus        47 VvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp-----------~~-----  110 (340)
                      |.|++|-+|+.+++.|.+.|++++...+...     ..+.-+.+++++.+..++|.+|-+..           +.     
T Consensus         2 ItGa~GfiG~~l~~~L~~~g~~v~~~~~~~~-----~Dl~~~~~l~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~   76 (306)
T PLN02725          2 VAGHRGLVGSAIVRKLEALGFTNLVLRTHKE-----LDLTRQADVEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIRE   76 (306)
T ss_pred             cccCCCcccHHHHHHHHhCCCcEEEeecccc-----CCCCCHHHHHHHHhccCCCEEEEeeeeecccchhhhCcHHHHHH
Confidence            5699999999999999999988663332221     23344556777765556898887641           11     


Q ss_pred             ---hHHHHHHHHHHcCCcEEEEecC
Q 019500          111 ---FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       111 ---~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                         ....+++.|.+.+++.+|.+++
T Consensus        77 n~~~~~~ll~~~~~~~~~~~i~~SS  101 (306)
T PLN02725         77 NLQIQTNVIDAAYRHGVKKLLFLGS  101 (306)
T ss_pred             HhHHHHHHHHHHHHcCCCeEEEeCc
Confidence               2445788888889987776665

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=90.94  E-value=0.55  Score=46.18  Aligned_cols=185  Identities=15%  Similarity=0.130  Sum_probs=97.9

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc--C---Ce---EEEe---------------eC-----CCCC-C-ceecCcccccCH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY--G---TK---MVGG---------------VT-----PKKG-G-TEHLGLPVFNTV   91 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~--G---~~---vv~~---------------Vn-----P~~~-g-~~i~G~p~y~sl   91 (340)
                      +.+|+|+|. |++|+.+++.+.+.  .   |+   ..+.               +|     +||- | +--..+.+.+++
T Consensus        21 ~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl   99 (372)
T KOG2711|consen   21 PLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL   99 (372)
T ss_pred             ceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence            578888898 99999988765542  1   11   1111               11     1110 0 001234455677


Q ss_pred             HHhhccCCCcEEEEecChhhHHHHHHHHHH---cCCcEEEEecCCCCh--hh--HHHHHHHHhccCCcE---EEccCCCC
Q 019500           92 AEAKAETKANASAIYVPPPFAAAAILEAME---AELDLVVCITEGIPQ--HD--MVRVKAALNNQSKTR---LVGPNCPG  161 (340)
Q Consensus        92 ~dip~~~~vDlavi~vp~~~v~~~v~ea~~---~Gvk~vvi~t~Gf~e--~~--~~~l~~~aar~~gir---viGPNc~G  161 (340)
                      .+...  +.|+.|..+|..+...+.++...   .++.+ |=++-||.-  ++  ..-+-+.+.++.|+.   +.|||--.
T Consensus       100 ~ea~~--dADilvf~vPhQf~~~ic~~l~g~vk~~~~a-ISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNiA~  176 (372)
T KOG2711|consen  100 VEAAK--DADILVFVVPHQFIPRICEQLKGYVKPGATA-ISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANIAS  176 (372)
T ss_pred             HHHhc--cCCEEEEeCChhhHHHHHHHHhcccCCCCeE-EEeecceeccCCCCceeehHHHHHHHhCCCceeecCCchHH
Confidence            77665  58999999999999988888764   46666 446778852  22  222333444556654   67888543


Q ss_pred             -cccCC--CcccccCCCCC--------CCCCcEEEEecChHHHHHHHHHHH---hCCCCceEEeecCCCC---CCCCCHH
Q 019500          162 -VIKPG--ECKIGIMPGYI--------HKPGRIGIVSRSGTLTYEAVFQTT---AVGLGQSTCVGIGGDP---FNGTNFV  224 (340)
Q Consensus       162 -i~~p~--~~~~~~~~~~~--------~~~G~valvSQSG~l~~~~~~~~~---~~giG~S~~vs~Gn~a---~~dv~~~  224 (340)
                       +.+-.  ...++..+...        +..-..=+..++-.-+.++...+.   .-+-||.--...||..   +.-..+.
T Consensus       177 EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~Gl~  256 (372)
T KOG2711|consen  177 EVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLGLL  256 (372)
T ss_pred             HHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhhHH
Confidence             33322  22233321100        111223344444444444433222   2356787777777742   2234455


Q ss_pred             HHHHHh
Q 019500          225 DCVTKF  230 (340)
Q Consensus       225 d~l~~l  230 (340)
                      |.+.|.
T Consensus       257 Em~~F~  262 (372)
T KOG2711|consen  257 EMIKFA  262 (372)
T ss_pred             HHHHHH
Confidence            555443

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=90.93  E-value=0.69  Score=41.97  Aligned_cols=55  Identities=18%  Similarity=0.300  Sum_probs=41.1

Q ss_pred             CHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHh---C-CCCCEEEEEeCCCCC
Q 019500          222 NFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKES---G-TEKPIVAFIAGLTAP  276 (340)
Q Consensus       222 ~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~---r-~~KPVvvlk~Grs~~  276 (340)
                      .+.+.|+.+.+||+.++|++++.+.|........+.+++   + .+|||+++--|....
T Consensus        21 ~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s   79 (208)
T cd07023          21 SLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAAS   79 (208)
T ss_pred             HHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcchh
Confidence            466777888899999999999998776555544444433   3 589999999886543

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=90.93  E-value=1.7  Score=43.68  Aligned_cols=84  Identities=17%  Similarity=0.096  Sum_probs=54.3

Q ss_pred             EEEEeCCCCCcchHHHHHHHHc--CCeEEEee-CCCCCC------------ceecC---------------ccccc---C
Q 019500           44 RVICQGITGKNGTFHTEQAIEY--GTKMVGGV-TPKKGG------------TEHLG---------------LPVFN---T   90 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~--G~~vv~~V-nP~~~g------------~~i~G---------------~p~y~---s   90 (340)
                      +|+|+|++|..|+.+++.+.++  .|++++.+ +.+...            --+..               .+++.   .
T Consensus         3 ~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~~   82 (385)
T PRK05447          3 RITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGEEG   82 (385)
T ss_pred             eEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEEChhH
Confidence            4666799999999988877765  57777553 222100            00111               11221   3


Q ss_pred             HHHhhccCCCcEEEEecChhhHHHHHHHHHHcCCcEE
Q 019500           91 VAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLV  127 (340)
Q Consensus        91 l~dip~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~v  127 (340)
                      +.++.+..++|+++.+++......-..+|+++|.+.+
T Consensus        83 ~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~Va  119 (385)
T PRK05447         83 LCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIA  119 (385)
T ss_pred             HHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEE
Confidence            4444443358999999999877788889999997753

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=90.89  E-value=0.6  Score=42.62  Aligned_cols=54  Identities=19%  Similarity=0.247  Sum_probs=41.0

Q ss_pred             CHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHH---HHhC-CCCCEEEEEeCCCC
Q 019500          222 NFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALI---KESG-TEKPIVAFIAGLTA  275 (340)
Q Consensus       222 ~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~---~a~r-~~KPVvvlk~Grs~  275 (340)
                      ++.+.|+.+.+||+.++|+|.+.+.|.......++.   +..+ .+||||++--|...
T Consensus        25 ~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~   82 (211)
T cd07019          25 TTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAA   82 (211)
T ss_pred             HHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeeh
Confidence            466778888999999999999998776555544443   3444 68999999988754

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=90.70  E-value=1.2  Score=43.03  Aligned_cols=114  Identities=16%  Similarity=0.254  Sum_probs=68.1

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHh-----------hccCCCcEEEEecChh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEA-----------KAETKANASAIYVPPP  110 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~di-----------p~~~~vDlavi~vp~~  110 (340)
                      +.+|+|+|+ |..|..+++||...|..-+..+|+..-..+-.+...|-+-+|+           ..+.++++-|......
T Consensus        19 ~s~VLIvG~-gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~   97 (286)
T cd01491          19 KSNVLISGL-GGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGP   97 (286)
T ss_pred             cCcEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            556888899 7799999999999999866688876532222222222221111           1112456655555443


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCccc
Q 019500          111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK  164 (340)
Q Consensus       111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~  164 (340)
                      ...+.+.     +... |+.+.. +.+...++-+++ +++++.++--++.|+.-
T Consensus        98 ~~~~~l~-----~fdv-VV~~~~-~~~~~~~in~~c-~~~~ipfI~a~~~G~~G  143 (286)
T cd01491          98 LTTDELL-----KFQV-VVLTDA-SLEDQLKINEFC-HSPGIKFISADTRGLFG  143 (286)
T ss_pred             CCHHHHh-----cCCE-EEEecC-CHHHHHHHHHHH-HHcCCEEEEEeccccEE
Confidence            3333332     3444 445543 444555666666 78999999889888753

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=90.68  E-value=0.95  Score=37.96  Aligned_cols=115  Identities=14%  Similarity=0.147  Sum_probs=63.9

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce-ecCccccc----------CHHHhhccCCCcEEEEecChh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-HLGLPVFN----------TVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~-i~G~p~y~----------sl~dip~~~~vDlavi~vp~~  110 (340)
                      ..+|+|+|+ |..|..++++|...|..-+..+|+..-..+ +.-.+.|.          .+.+...+..|++=+...+..
T Consensus         2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            457888899 889999999999999864547776542111 11111111          122222222456666666666


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCC
Q 019500          111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG  161 (340)
Q Consensus       111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~G  161 (340)
                      ...+..++.. .+...++. +..- .+....+.+.+ ++++++++--+..|
T Consensus        81 ~~~~~~~~~~-~~~d~vi~-~~d~-~~~~~~l~~~~-~~~~~p~i~~~~~g  127 (135)
T PF00899_consen   81 IDEENIEELL-KDYDIVID-CVDS-LAARLLLNEIC-REYGIPFIDAGVNG  127 (135)
T ss_dssp             CSHHHHHHHH-HTSSEEEE-ESSS-HHHHHHHHHHH-HHTT-EEEEEEEET
T ss_pred             cccccccccc-cCCCEEEE-ecCC-HHHHHHHHHHH-HHcCCCEEEEEeec
Confidence            6556666666 46666443 3322 22233455555 78888877444333

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>cd07014 S49_SppA Signal peptide peptidase A

Probab=90.67  E-value=0.67  Score=40.91  Aligned_cols=55  Identities=20%  Similarity=0.257  Sum_probs=39.3

Q ss_pred             CHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHH---HHHhC-CCCCEEEEEeCCCCC
Q 019500          222 NFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAAL---IKESG-TEKPIVAFIAGLTAP  276 (340)
Q Consensus       222 ~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f---~~a~r-~~KPVvvlk~Grs~~  276 (340)
                      .+.+.++.+.+||++++|++.+.+.|.......++   ++..+ .+||||++--|....
T Consensus        26 ~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g   84 (177)
T cd07014          26 TTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAAS   84 (177)
T ss_pred             HHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhH
Confidence            45556666778999999999999876555444433   33343 689999999876654

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=90.65  E-value=0.61  Score=48.41  Aligned_cols=66  Identities=15%  Similarity=0.178  Sum_probs=45.2

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc-e------------e-cC-------------cccccCHHHhhc
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E------------H-LG-------------LPVFNTVAEAKA   96 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~-~------------i-~G-------------~p~y~sl~dip~   96 (340)
                      +|.|+|+ |.||.-++.++...|++++ ..|++...- .            + .|             +..-.+++++. 
T Consensus         9 ~V~VIGa-G~MG~gIA~~la~aG~~V~-l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~~-   85 (507)
T PRK08268          9 TVAVIGA-GAMGAGIAQVAAQAGHTVL-LYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADLA-   85 (507)
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhC-
Confidence            4667799 9999999999999999854 444432100 1            0 13             34556777764 


Q ss_pred             cCCCcEEEEecChhhHHH
Q 019500           97 ETKANASAIYVPPPFAAA  114 (340)
Q Consensus        97 ~~~vDlavi~vp~~~v~~  114 (340)
                        +.|++|-++|.+...+
T Consensus        86 --~aDlViEav~E~~~vK  101 (507)
T PRK08268         86 --DCDLVVEAIVERLDVK  101 (507)
T ss_pred             --CCCEEEEcCcccHHHH
Confidence              4899999999866543

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=90.63  E-value=1.6  Score=40.88  Aligned_cols=88  Identities=13%  Similarity=0.149  Sum_probs=52.2

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeC-CCCC-Cc---eec---Ccccc-------cCHHHhhccCCCcEEEEecC
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKG-GT---EHL---GLPVF-------NTVAEAKAETKANASAIYVP  108 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~Vn-P~~~-g~---~i~---G~p~y-------~sl~dip~~~~vDlavi~vp  108 (340)
                      +|+|.|++|..|+.+++.|.+.|++++ .++ +... ..   .+.   ++..+       .+++++....++|.++-+..
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag   79 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGHEVV-VLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFAG   79 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCCeEE-EEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECcc
Confidence            467889999999999999999999865 342 1110 00   111   12222       23444433235898886653


Q ss_pred             h------------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          109 P------------------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       109 ~------------------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      .                  .....+++.|.+.+++.++.+++
T Consensus        80 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss  121 (328)
T TIGR01179        80 LIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSS  121 (328)
T ss_pred             ccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecc
Confidence            2                  12345566777778877766554

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=90.63  E-value=1.1  Score=45.36  Aligned_cols=99  Identities=17%  Similarity=0.160  Sum_probs=59.5

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEE-EeeCCCCCC-ceecCcccccCHHHhhccCCCcEEEEecChhhHHHH-HHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGG-TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA-ILE  118 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv-~~VnP~~~g-~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~-v~e  118 (340)
                      .-+|+|+|+ |+.|+.+++.++.+|.+++ +-++|...- ..-.|..+. ++++...  ..|++|.++....+.+. .-.
T Consensus       195 Gk~VvViG~-G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~--~aDVVItaTG~~~vI~~~~~~  270 (406)
T TIGR00936       195 GKTVVVAGY-GWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAK--IGDIFITATGNKDVIRGEHFE  270 (406)
T ss_pred             cCEEEEECC-CHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHh--cCCEEEECCCCHHHHHHHHHh
Confidence            336778899 9999999999999999844 335774310 123455443 4566654  58999998876554432 333


Q ss_pred             HHHcCCcEEEEecCCCC-hhhHHHHHHHH
Q 019500          119 AMEAELDLVVCITEGIP-QHDMVRVKAAL  146 (340)
Q Consensus       119 a~~~Gvk~vvi~t~Gf~-e~~~~~l~~~a  146 (340)
                      +.+.|.  +++.++.+. |-+...|.+.+
T Consensus       271 ~mK~Ga--iliN~G~~~~eId~~aL~~~~  297 (406)
T TIGR00936       271 NMKDGA--IVANIGHFDVEIDVKALEELA  297 (406)
T ss_pred             cCCCCc--EEEEECCCCceeCHHHHHHHH
Confidence            333333  333444444 34556665543

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK12320 hypothetical protein; Provisional

Probab=90.61  E-value=1.3  Score=47.77  Aligned_cols=86  Identities=17%  Similarity=0.157  Sum_probs=54.9

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccc------cCHHHhhccCCCcEEEEecChh-------
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF------NTVAEAKAETKANASAIYVPPP-------  110 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y------~sl~dip~~~~vDlavi~vp~~-------  110 (340)
                      +|+|.|++|.+|+.+++.|.+.|++++...+.... ....++..+      +.+.++..  ++|.++-+.+..       
T Consensus         2 kILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~-~~~~~ve~v~~Dl~d~~l~~al~--~~D~VIHLAa~~~~~~~~v   78 (699)
T PRK12320          2 QILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHD-ALDPRVDYVCASLRNPVLQELAG--EADAVIHLAPVDTSAPGGV   78 (699)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhh-cccCCceEEEccCCCHHHHHHhc--CCCEEEEcCccCccchhhH
Confidence            68889999999999999999999997755442110 000111111      12444443  589999887632       


Q ss_pred             ---hHHHHHHHHHHcCCcEEEEecCC
Q 019500          111 ---FAAAAILEAMEAELDLVVCITEG  133 (340)
Q Consensus       111 ---~v~~~v~ea~~~Gvk~vvi~t~G  133 (340)
                         ....+++.|.+.|++ +|.+++.
T Consensus        79 Nv~Gt~nLleAA~~~GvR-iV~~SS~  103 (699)
T PRK12320         79 GITGLAHVANAAARAGAR-LLFVSQA  103 (699)
T ss_pred             HHHHHHHHHHHHHHcCCe-EEEEECC
Confidence               244567888888987 4445544

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=90.61  E-value=1.2  Score=40.36  Aligned_cols=115  Identities=17%  Similarity=0.135  Sum_probs=59.0

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceec-----------CcccccCHHHhhccCCCcEEEEecChh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL-----------GLPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~-----------G~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      ..+|+|+|+ |.+|..++++|...|..-+..+|+..-..+-.           |.+--..+.+-..+.++++-+...+..
T Consensus        21 ~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~   99 (202)
T TIGR02356        21 NSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKER   99 (202)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhc
Confidence            445777799 88999999999999986555888764211111           111011111111122345555444443


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCC
Q 019500          111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG  161 (340)
Q Consensus       111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~G  161 (340)
                      ...+.+++.. .+...++ .+.+-. +....+.+.+ ++++++++-..+.|
T Consensus       100 i~~~~~~~~~-~~~D~Vi-~~~d~~-~~r~~l~~~~-~~~~ip~i~~~~~g  146 (202)
T TIGR02356       100 VTAENLELLI-NNVDLVL-DCTDNF-ATRYLINDAC-VALGTPLISAAVVG  146 (202)
T ss_pred             CCHHHHHHHH-hCCCEEE-ECCCCH-HHHHHHHHHH-HHcCCCEEEEEecc
Confidence            3334444444 3555544 343321 2222344444 67777766555444

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=90.57  E-value=1.7  Score=40.92  Aligned_cols=87  Identities=20%  Similarity=0.175  Sum_probs=53.6

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceec--Cccc-------ccCHHHhhccCCCcEEEEecCh-----
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL--GLPV-------FNTVAEAKAETKANASAIYVPP-----  109 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~--G~p~-------y~sl~dip~~~~vDlavi~vp~-----  109 (340)
                      +|+|.|++|.+|+.+++.|.+.|++++...........+.  ++..       ..++.++.+  .+|.++-+...     
T Consensus         2 ~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~--~~d~vi~~a~~~~~~~   79 (328)
T TIGR03466         2 KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVA--GCRALFHVAADYRLWA   79 (328)
T ss_pred             eEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHh--CCCEEEEeceecccCC
Confidence            4778899999999999999999998664332211001111  2221       223445444  58888876532     


Q ss_pred             -----------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          110 -----------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       110 -----------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                                 .....+++.|.+.+++.+|..++
T Consensus        80 ~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS  113 (328)
T TIGR03466        80 PDPEEMYAANVEGTRNLLRAALEAGVERVVYTSS  113 (328)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence                       11244567777888888776665

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=90.55  E-value=0.92  Score=44.74  Aligned_cols=88  Identities=14%  Similarity=0.069  Sum_probs=59.9

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc---CCeEEEeeCCCCCC---------ce-----------------ecC--ccccc-
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGG---------TE-----------------HLG--LPVFN-   89 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~---G~~vv~~VnP~~~g---------~~-----------------i~G--~p~y~-   89 (340)
                      +++|.|.|. |++|+.+.|.+.+.   .++++ .||.-..-         +.                 +.|  ++++. 
T Consensus         1 ~~ki~INGf-GRIGR~~~R~~~~~~~~~~~vv-aind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~   78 (337)
T PRK07403          1 MIRVAINGF-GRIGRNFLRCWLGRENSQLELV-AINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSD   78 (337)
T ss_pred             CeEEEEEcc-ChHHHHHHHHHHhccCCCeEEE-EecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEc
Confidence            368889999 99999999986643   46677 44431100         00                 123  33443 


Q ss_pred             -CHHHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500           90 -TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus        90 -sl~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                       +.+++|= +.++|+|+.|+......+.....++.|++.++ +|+
T Consensus        79 ~dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~-iSa  122 (337)
T PRK07403         79 RNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVL-ITA  122 (337)
T ss_pred             CCcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEE-eCC
Confidence             3466662 23699999999999999999999999999865 453

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=90.36  E-value=1.6  Score=40.15  Aligned_cols=35  Identities=29%  Similarity=0.321  Sum_probs=28.0

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~   77 (340)
                      +.+|+|+|+ |..|..++++|...|..-+..+|+..
T Consensus        21 ~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          21 NARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            346777799 88999999999999987555777654

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=90.31  E-value=1.8  Score=40.32  Aligned_cols=35  Identities=20%  Similarity=0.275  Sum_probs=27.0

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~   77 (340)
                      ..+|+|+|+ |..|..++++|...|..-+..||+..
T Consensus        11 ~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755          11 NAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            345777899 88999999999999986444666643

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=90.26  E-value=1.1  Score=42.72  Aligned_cols=84  Identities=17%  Similarity=0.126  Sum_probs=52.4

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee-cCcccccCHHHhhccCCCcEEEEecC----------hh--
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-LGLPVFNTVAEAKAETKANASAIYVP----------PP--  110 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i-~G~p~y~sl~dip~~~~vDlavi~vp----------~~--  110 (340)
                      +|+|.|++|-.|+.+++.|.+.| +++ .++...  ..+ ..+.-+..+.++.+..++|+++=+.-          ++  
T Consensus         2 ~iLVtG~~GfiGs~l~~~L~~~g-~V~-~~~~~~--~~~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~   77 (299)
T PRK09987          2 NILLFGKTGQVGWELQRALAPLG-NLI-ALDVHS--TDYCGDFSNPEGVAETVRKIRPDVIVNAAAHTAVDKAESEPEFA   77 (299)
T ss_pred             eEEEECCCCHHHHHHHHHhhccC-CEE-Eecccc--ccccCCCCCHHHHHHHHHhcCCCEEEECCccCCcchhhcCHHHH
Confidence            68899999999999999998888 655 444322  111 23333445555554345898885431          11  


Q ss_pred             ------hHHHHHHHHHHcCCcEEEEecC
Q 019500          111 ------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       111 ------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                            ....+++.|.+.|++. |.+|+
T Consensus        78 ~~~N~~~~~~l~~aa~~~g~~~-v~~Ss  104 (299)
T PRK09987         78 QLLNATSVEAIAKAANEVGAWV-VHYST  104 (299)
T ss_pred             HHHHHHHHHHHHHHHHHcCCeE-EEEcc
Confidence                  1345777788889874 44555

>PLN02240 UDP-glucose 4-epimerase

Probab=90.23  E-value=2.2  Score=41.02  Aligned_cols=89  Identities=15%  Similarity=0.077  Sum_probs=53.0

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC---------------ce---e-cCcccccCHHHhhccCCCcEEE
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG---------------TE---H-LGLPVFNTVAEAKAETKANASA  104 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g---------------~~---i-~G~p~y~sl~dip~~~~vDlav  104 (340)
                      +|+|.|++|..|+.+++.|.+.|++++...+.....               ..   + ..+.-..++.++.+...+|.++
T Consensus         7 ~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~d~vi   86 (352)
T PLN02240          7 TILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRFDAVI   86 (352)
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCCCEEE
Confidence            578889999999999999999999876432211100               00   0 1111112344443323589888


Q ss_pred             EecCh------------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          105 IYVPP------------------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       105 i~vp~------------------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      -+...                  .....+++.|.+.+++.++.+++
T Consensus        87 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss  132 (352)
T PLN02240         87 HFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSS  132 (352)
T ss_pred             EccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            87532                  12335667777788887665554

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=89.90  E-value=1.2  Score=41.43  Aligned_cols=49  Identities=12%  Similarity=0.135  Sum_probs=33.5

Q ss_pred             CCCCCCCcccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500           27 FTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (340)
Q Consensus        27 ~~~~~~~l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~   77 (340)
                      |.+....+.=+|..+..+|+|+|. |+.+..=++.|+++|.++. .|.|.-
T Consensus        10 ~~~~~~~~pi~l~~~~~~VLVVGG-G~VA~RK~~~Ll~~gA~Vt-VVap~i   58 (223)
T PRK05562         10 YNEENKYMFISLLSNKIKVLIIGG-GKAAFIKGKTFLKKGCYVY-ILSKKF   58 (223)
T ss_pred             hhccCCEeeeEEECCCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EEcCCC
Confidence            344433344445666778999998 7777666678888888755 788875

>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

Probab=89.86  E-value=1.3  Score=43.97  Aligned_cols=86  Identities=13%  Similarity=0.037  Sum_probs=57.9

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc-----CCeEEEeeCCCCCC---------ce-------------------------ec
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY-----GTKMVGGVTPKKGG---------TE-------------------------HL   83 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~-----G~~vv~~VnP~~~g---------~~-------------------------i~   83 (340)
                      ++|.|.|. |++|+.+.|.+.+.     .+++++.-+|...-         +.                         +.
T Consensus         4 ikVgINGF-GRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~in   82 (361)
T PTZ00434          4 IKVGINGF-GRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVVN   82 (361)
T ss_pred             eEEEEECc-ChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEEC
Confidence            68999999 99999999987763     46777544442100         01                         12


Q ss_pred             Cc--ccc---cCHHHhh-ccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 019500           84 GL--PVF---NTVAEAK-AETKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (340)
Q Consensus        84 G~--p~y---~sl~dip-~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi  129 (340)
                      |.  +++   ++.+++| .+.++|+++-|+-.-...+-+..-++.|+|.++|
T Consensus        83 g~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkVii  134 (361)
T PTZ00434         83 GHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVI  134 (361)
T ss_pred             CEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEE
Confidence            32  333   3577777 2346899998887777777777777889988664

>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]

Probab=89.81  E-value=3.5  Score=35.75  Aligned_cols=96  Identities=17%  Similarity=0.278  Sum_probs=58.6

Q ss_pred             EeCCCC-CcchHHHH-HHHHcCCeEEEe-eCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh----hhHHHHHHHH
Q 019500           47 CQGITG-KNGTFHTE-QAIEYGTKMVGG-VTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP----PFAAAAILEA  119 (340)
Q Consensus        47 VvGasg-k~G~~v~~-~l~~~G~~vv~~-VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~----~~v~~~v~ea  119 (340)
                      -.|..+ +.|..++. .|.+.||+++++ .....  +++        +.+..+ +++|++.++.-.    +.++++++.|
T Consensus        19 k~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp--~e~--------v~aA~~-~dv~vIgvSsl~g~h~~l~~~lve~l   87 (143)
T COG2185          19 KLGLDGHDRGAKVIARALADAGFEVINLGLFQTP--EEA--------VRAAVE-EDVDVIGVSSLDGGHLTLVPGLVEAL   87 (143)
T ss_pred             ccCccccccchHHHHHHHHhCCceEEecCCcCCH--HHH--------HHHHHh-cCCCEEEEEeccchHHHHHHHHHHHH
Confidence            345433 45655554 556679997642 21111  111        223333 379999999855    5567788888


Q ss_pred             HHcCCcEEEEecCCC-ChhhHHHHHHHHhccCCc-EEEccC
Q 019500          120 MEAELDLVVCITEGI-PQHDMVRVKAALNNQSKT-RLVGPN  158 (340)
Q Consensus       120 ~~~Gvk~vvi~t~Gf-~e~~~~~l~~~aar~~gi-rviGPN  158 (340)
                      .++|...+.++..|. +.++..+++     ++|+ ++.+|.
T Consensus        88 re~G~~~i~v~~GGvip~~d~~~l~-----~~G~~~if~pg  123 (143)
T COG2185          88 REAGVEDILVVVGGVIPPGDYQELK-----EMGVDRIFGPG  123 (143)
T ss_pred             HHhCCcceEEeecCccCchhHHHHH-----HhCcceeeCCC
Confidence            899999987677774 555555443     4564 588875

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=89.78  E-value=1.3  Score=44.48  Aligned_cols=88  Identities=16%  Similarity=0.081  Sum_probs=62.5

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcC---CeEEEeeCC-----------CC--------------CCc--eecC--ccccc
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYG---TKMVGGVTP-----------KK--------------GGT--EHLG--LPVFN   89 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G---~~vv~~VnP-----------~~--------------~g~--~i~G--~p~y~   89 (340)
                      .++|+|.|+ |++|+.+.+.+.+..   .+++ .||.           ++              .|+  .+.|  ++++.
T Consensus        60 ~~kVaInGf-GrIGR~vlr~l~~~~~~~~evv-aINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~  137 (395)
T PLN03096         60 KIKVAINGF-GRIGRNFLRCWHGRKDSPLDVV-AINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVS  137 (395)
T ss_pred             ccEEEEECc-CHHHHHHHHHHHhCCCCCeEEE-EEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEE
Confidence            368889999 999999999988653   3555 4553           11              111  1234  33443


Q ss_pred             --CHHHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500           90 --TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus        90 --sl~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                        +++++|= +.++|+++.|+......+.....++.|.+.|+ +|.
T Consensus       138 ~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~-iSa  182 (395)
T PLN03096        138 DRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVL-ITA  182 (395)
T ss_pred             cCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEE-eCC
Confidence              4777773 24799999999999999999999999999866 453

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=89.70  E-value=2.4  Score=38.30  Aligned_cols=115  Identities=14%  Similarity=0.165  Sum_probs=63.3

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceec-----------CcccccCHHHhhccCCCcEEEEecChhh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL-----------GLPVFNTVAEAKAETKANASAIYVPPPF  111 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~-----------G~p~y~sl~dip~~~~vDlavi~vp~~~  111 (340)
                      .+|+|+|+ |..|..++++|...|..-+..+|+..-..+-.           |.+--..+.+-..+.+||+-+-+.+...
T Consensus        22 s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~~  100 (197)
T cd01492          22 ARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDI  100 (197)
T ss_pred             CcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecCc
Confidence            35677799 66999999999999998666888764211111           2111111112122235676665543322


Q ss_pred             HHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcc
Q 019500          112 AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVI  163 (340)
Q Consensus       112 v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~  163 (340)
                      . +..++.. .+...++ .+.. +.+....+.+.+ ++++++++-..+.|+.
T Consensus       101 ~-~~~~~~~-~~~dvVi-~~~~-~~~~~~~ln~~c-~~~~ip~i~~~~~G~~  147 (197)
T cd01492         101 S-EKPEEFF-SQFDVVV-ATEL-SRAELVKINELC-RKLGVKFYATGVHGLF  147 (197)
T ss_pred             c-ccHHHHH-hCCCEEE-ECCC-CHHHHHHHHHHH-HHcCCCEEEEEecCCE
Confidence            2 2222222 3556543 4433 233444555665 7889998877777754

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=89.66  E-value=3.6  Score=40.45  Aligned_cols=83  Identities=17%  Similarity=0.197  Sum_probs=53.1

Q ss_pred             chHHHHHHHHcCCeEEEeeCCCCC--Cc------eecCcccccCHHHhhccCCCcEEEEecChhhH-HHHHHHHHHcC-C
Q 019500           55 GTFHTEQAIEYGTKMVGGVTPKKG--GT------EHLGLPVFNTVAEAKAETKANASAIYVPPPFA-AAAILEAMEAE-L  124 (340)
Q Consensus        55 G~~v~~~l~~~G~~vv~~VnP~~~--g~------~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v-~~~v~ea~~~G-v  124 (340)
                      |+..+++|.+.||++. ..|++..  .+      .-.|.+..++..++.+  +.|++++++|.... .++++..++.- -
T Consensus        32 GspMArnLlkAGheV~-V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa--~ADVVIL~LPd~aaV~eVl~GLaa~L~~  108 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVV-LAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK--HGEIHVLFTPFGKGTFSIARTIIEHVPE  108 (341)
T ss_pred             HHHHHHHHHHCCCEEE-EEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh--CCCEEEEecCCHHHHHHHHHHHHhcCCC
Confidence            5678899999999954 4444321  01      1247888889999987  58999999998764 45655444432 2


Q ss_pred             cEEEEecCCCChhhHH
Q 019500          125 DLVVCITEGIPQHDMV  140 (340)
Q Consensus       125 k~vvi~t~Gf~e~~~~  140 (340)
                      ..+||-++=.+.+...
T Consensus       109 GaIVID~STIsP~t~~  124 (341)
T TIGR01724       109 NAVICNTCTVSPVVLY  124 (341)
T ss_pred             CCEEEECCCCCHHHHH
Confidence            3345545545544433

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=89.62  E-value=2.6  Score=41.20  Aligned_cols=62  Identities=11%  Similarity=0.194  Sum_probs=45.1

Q ss_pred             eEEEEeCCCCCcchHHHHHHH-HcCCeEEEeeCCCCCCc--eecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           43 TRVICQGITGKNGTFHTEQAI-EYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~-~~G~~vv~~VnP~~~g~--~i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      -.|.|+|. |++|+.+++.+. .+|.+++ ..+|....+  .-.|.+ |.+++++.+  ..|++++.+|-
T Consensus       146 ktvGIiG~-G~IG~~va~~l~~~fgm~V~-~~~~~~~~~~~~~~~~~-~~~l~ell~--~sDvv~lh~pl  210 (323)
T PRK15409        146 KTLGIVGM-GRIGMALAQRAHFGFNMPIL-YNARRHHKEAEERFNAR-YCDLDTLLQ--ESDFVCIILPL  210 (323)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHhcCCCEEE-EECCCCchhhHHhcCcE-ecCHHHHHH--hCCEEEEeCCC
Confidence            34666799 999999999997 7888876 456543111  123443 669999987  58999999985

>PLN02235 ATP citrate (pro-S)-lyase

Probab=89.44  E-value=2.7  Score=42.69  Aligned_cols=97  Identities=19%  Similarity=0.170  Sum_probs=66.7

Q ss_pred             CCCcEEEEecChHHHHHHHHHHHhCCC--CceEEeecCCCCCCCCCHHHHHHHhh----cCCCccEEEEEEccCCCcHHH
Q 019500          179 KPGRIGIVSRSGTLTYEAVFQTTAVGL--GQSTCVGIGGDPFNGTNFVDCVTKFI----ADPQTEGIILIGEIGGTAEED  252 (340)
Q Consensus       179 ~~G~valvSQSG~l~~~~~~~~~~~gi--G~S~~vs~Gn~a~~dv~~~d~l~~l~----~Dp~T~~I~ly~E~~g~~~~~  252 (340)
                      ..|+|+.+.--++++.+.+|.....|.  -...|.-+|+.+ +.-.+.+.+.-+.    .||+.++|++-+=++=..-.+
T Consensus       268 ldG~Ig~mvnGAGlamaTmD~I~~~G~~g~pANFlDvGG~a-~~e~v~~a~~iil~~~~~~~~vk~ilvnIfGGI~rcd~  346 (423)
T PLN02235        268 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-NEEEVLQYARVVIDCATANPDGRKRALLIGGGIANFTD  346 (423)
T ss_pred             CCCeEEEEecCcHHHHHHHHHHHHcCCCCCCceeeecCCCC-CHHHHHHHHHHHHhhhhcCCCCcEEEEEEecccccchh
Confidence            459999999999999999999988883  467888888876 3556667676666    799999997776432111111


Q ss_pred             -H---HHHHHHhC--------CCCCEEEEEeCCCCC
Q 019500          253 -A---AALIKESG--------TEKPIVAFIAGLTAP  276 (340)
Q Consensus       253 -~---~~f~~a~r--------~~KPVvvlk~Grs~~  276 (340)
                       +   +-.+++++        .++|||+=..|....
T Consensus       347 VA~tf~GIi~A~~e~~~kl~~~~vpivVRl~GtN~e  382 (423)
T PLN02235        347 VAATFNGIIRALREKESKLKAARMHIFVRRGGPNYQ  382 (423)
T ss_pred             hhhhhhHHHHHHHHhhhccccCCccEEEECCCCCHH
Confidence             2   23344443        368998866554443

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=89.41  E-value=1.3  Score=40.41  Aligned_cols=34  Identities=12%  Similarity=0.163  Sum_probs=27.8

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~   77 (340)
                      .-+|+|+|. |+.|..-++.|++.|.++. .|+|+.
T Consensus         9 gk~vlVvGg-G~va~rk~~~Ll~~ga~Vt-Vvsp~~   42 (205)
T TIGR01470         9 GRAVLVVGG-GDVALRKARLLLKAGAQLR-VIAEEL   42 (205)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCCEEE-EEcCCC
Confidence            447888899 8888888899999998765 788875

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=89.39  E-value=2  Score=42.55  Aligned_cols=86  Identities=17%  Similarity=0.178  Sum_probs=60.8

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeC-CC----------CC---C---ce---------ecC--cccc--cCH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVT-PK----------KG---G---TE---------HLG--LPVF--NTV   91 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~Vn-P~----------~~---g---~~---------i~G--~p~y--~sl   91 (340)
                      ++|.|.|. |++|+.+.|.+.+. .++++ .|| +.          ++   |   .+         +.|  ++++  ++.
T Consensus         3 ~ki~INGf-GRIGR~~~r~~~~~~~~~vv-aINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~dp   80 (343)
T PRK07729          3 TKVAINGF-GRIGRMVFRKAIKESAFEIV-AINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRDP   80 (343)
T ss_pred             eEEEEECc-ChHHHHHHHHHhhcCCcEEE-EecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCCh
Confidence            68889999 99999999987654 56777 344 21          10   0   00         233  3344  367


Q ss_pred             HHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEec
Q 019500           92 AEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCIT  131 (340)
Q Consensus        92 ~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t  131 (340)
                      +++|= +.++|+++.|+......+.+...++.|++.++ +|
T Consensus        81 ~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~-iS  120 (343)
T PRK07729         81 KELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVI-LT  120 (343)
T ss_pred             hhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEE-eC
Confidence            78773 24799999999999999999999999998855 45

>PRK08618 ornithine cyclodeaminase; Validated

Probab=89.37  E-value=0.64  Score=45.30  Aligned_cols=88  Identities=11%  Similarity=0.059  Sum_probs=60.7

Q ss_pred             CcCCeEEEEeCCCCCcchHHHHHHHH-cCCeEEEeeCCCCCC-ce-------ecCc--ccccCHHHhhccCCCcEEEEec
Q 019500           39 VDKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG-TE-------HLGL--PVFNTVAEAKAETKANASAIYV  107 (340)
Q Consensus        39 ~p~~iaViVvGasgk~G~~v~~~l~~-~G~~vv~~VnP~~~g-~~-------i~G~--p~y~sl~dip~~~~vDlavi~v  107 (340)
                      .+...++.|+|+ |..++.++..+.. .+.+.+..+|+.... ++       -.++  ..|.+++++..  +.|+++.+|
T Consensus       124 ~~~~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~aDiVi~aT  200 (325)
T PRK08618        124 REDAKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIE--EADIIVTVT  200 (325)
T ss_pred             CCCCcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHh--cCCEEEEcc
Confidence            444566788899 8899888877654 577777788876421 11       1243  35788888775  599999999


Q ss_pred             ChhhHHHHHHHHHHcCCcEEEEec
Q 019500          108 PPPFAAAAILEAMEAELDLVVCIT  131 (340)
Q Consensus       108 p~~~v~~~v~ea~~~Gvk~vvi~t  131 (340)
                      |.. .+-.- ++++.|.+..-|.+
T Consensus       201 ~s~-~p~i~-~~l~~G~hV~~iGs  222 (325)
T PRK08618        201 NAK-TPVFS-EKLKKGVHINAVGS  222 (325)
T ss_pred             CCC-CcchH-HhcCCCcEEEecCC
Confidence            977 34444 88888988655443

>PRK09414 glutamate dehydrogenase; Provisional

Probab=89.29  E-value=2.4  Score=43.40  Aligned_cols=110  Identities=11%  Similarity=0.115  Sum_probs=62.5

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC-------CCCCCceec-----------Cccccc--------CHHH
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-------PKKGGTEHL-----------GLPVFN--------TVAE   93 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn-------P~~~g~~i~-----------G~p~y~--------sl~d   93 (340)
                      .+..+|+|+|. |+.|+..++.|.+.|.++++.-|       |+.  -.+.           .+.-|+        +-++
T Consensus       230 l~g~rVaIqGf-GnVG~~~A~~L~~~GakVVavsDs~G~iyn~~G--LD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~  306 (445)
T PRK09414        230 FEGKRVVVSGS-GNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEG--IDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS  306 (445)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcCCceEECCCC--CCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence            45678999999 99999999999999999886523       332  1111           121221        1222


Q ss_pred             hhccCCCcEEEEecChhh-HHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccC
Q 019500           94 AKAETKANASAIYVPPPF-AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN  158 (340)
Q Consensus        94 ip~~~~vDlavi~vp~~~-v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPN  158 (340)
                      +.+ .++|+.+-|..... ..+.+....+.++|.|+=.+-|.-..+..++   + ++.|+.++ |.
T Consensus       307 i~~-~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~---L-~~rGI~~v-PD  366 (445)
T PRK09414        307 PWS-VPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEV---F-LEAGVLFA-PG  366 (445)
T ss_pred             ccc-cCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHH---H-HHCCcEEE-Cc
Confidence            222 35788887765433 3444445545578875533333322223322   2 46787776 64

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=89.20  E-value=2.8  Score=41.17  Aligned_cols=90  Identities=16%  Similarity=0.191  Sum_probs=61.1

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC-CCCCCc--------------e--ecCcccccCHHHhhccCCCcEE
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT--------------E--HLGLPVFNTVAEAKAETKANAS  103 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn-P~~~g~--------------~--i~G~p~y~sl~dip~~~~vDla  103 (340)
                      ....|+|.||||-+|+.+++.|++.||++.+-|- |.....              +  ...+.-|.++++..+  ++|.|
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~--gcdgV   82 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID--GCDGV   82 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh--CCCEE
Confidence            3567899999999999999999999999876664 332000              0  134555667777766  47766


Q ss_pred             EEecCh-----------------hhHHHHHHHHHHcC-CcEEEEecCC
Q 019500          104 AIYVPP-----------------PFAAAAILEAMEAE-LDLVVCITEG  133 (340)
Q Consensus       104 vi~vp~-----------------~~v~~~v~ea~~~G-vk~vvi~t~G  133 (340)
                      +=+-.|                 ..+..+++.|.+.. ||.+| +|+.
T Consensus        83 fH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV-~TSS  129 (327)
T KOG1502|consen   83 FHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVV-YTSS  129 (327)
T ss_pred             EEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEE-Eecc
Confidence            532211                 23456888888888 99965 6653

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=89.01  E-value=2.6  Score=40.81  Aligned_cols=33  Identities=15%  Similarity=0.222  Sum_probs=28.8

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEe
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG   72 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~   72 (340)
                      |...+|+|.|++|-.|+.+++.|.+.|++++..
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~   40 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHAT   40 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence            566789999999999999999999999997743

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=88.99  E-value=1.7  Score=42.69  Aligned_cols=114  Identities=15%  Similarity=0.177  Sum_probs=62.1

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceec-------------CcccccCHHHhhccCCCcEEEEecCh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL-------------GLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~-------------G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      .+|+|+|+ |..|..++++|...|...+..||+..-..+-.             |.|--..+.+-..+.++++-+...+.
T Consensus        25 ~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~  103 (338)
T PRK12475         25 KHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVT  103 (338)
T ss_pred             CcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEec
Confidence            45777899 88999999999999986555888865211111             11111111111111234555555554


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCC
Q 019500          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG  161 (340)
Q Consensus       110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~G  161 (340)
                      +...+.+++.++ +...+|..+..+.  ....+.+++ +++|++++--.+.|
T Consensus       104 ~~~~~~~~~~~~-~~DlVid~~D~~~--~r~~in~~~-~~~~ip~i~~~~~g  151 (338)
T PRK12475        104 DVTVEELEELVK-EVDLIIDATDNFD--TRLLINDLS-QKYNIPWIYGGCVG  151 (338)
T ss_pred             cCCHHHHHHHhc-CCCEEEEcCCCHH--HHHHHHHHH-HHcCCCEEEEEecc
Confidence            444455566543 5666555444331  122233444 67888876555555

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=88.94  E-value=0.42  Score=40.43  Aligned_cols=79  Identities=18%  Similarity=0.173  Sum_probs=51.2

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce----ecCc----ccccCHHHhhccCCCcEEEEecChhh
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE----HLGL----PVFNTVAEAKAETKANASAIYVPPPF  111 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~----i~G~----p~y~sl~dip~~~~vDlavi~vp~~~  111 (340)
                      +.-+|+|+|+ |.+++.++..|.+.|++-++.+|++... ++    ..+.    --|.++.+...  +.|++|-++|...
T Consensus        11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~--~~DivI~aT~~~~   87 (135)
T PF01488_consen   11 KGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQ--EADIVINATPSGM   87 (135)
T ss_dssp             TTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHH--TESEEEE-SSTTS
T ss_pred             CCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHh--hCCeEEEecCCCC
Confidence            4556788899 9999999999999999867799987510 11    2111    12344554444  5899999998865


Q ss_pred             HHHHHHHHHHcC
Q 019500          112 AAAAILEAMEAE  123 (340)
Q Consensus       112 v~~~v~ea~~~G  123 (340)
                      . .+-++.++..
T Consensus        88 ~-~i~~~~~~~~   98 (135)
T PF01488_consen   88 P-IITEEMLKKA   98 (135)
T ss_dssp             T-SSTHHHHTTT
T ss_pred             c-ccCHHHHHHH
Confidence            5 3333444444

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=88.88  E-value=1.2  Score=40.60  Aligned_cols=54  Identities=19%  Similarity=0.309  Sum_probs=42.9

Q ss_pred             HHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC---CCCCEEEEEeCCCCC
Q 019500          223 FVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG---TEKPIVAFIAGLTAP  276 (340)
Q Consensus       223 ~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r---~~KPVvvlk~Grs~~  276 (340)
                      +.+.|+-+.+||+.++|++++.+.|.......++.++++   .+|||+++--|....
T Consensus        18 l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s   74 (207)
T TIGR00706        18 FDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAAS   74 (207)
T ss_pred             HHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccch
Confidence            456677778899999999999987766777777777665   359999999887653

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=88.84  E-value=1.7  Score=39.03  Aligned_cols=88  Identities=23%  Similarity=0.272  Sum_probs=47.8

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee-------------------------cCcccccCHHHhhcc
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-------------------------LGLPVFNTVAEAKAE   97 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i-------------------------~G~p~y~sl~dip~~   97 (340)
                      ++|.|+|. |..|-..+-.+.+.|++++ +++.+.  +.+                         ..+....+.++... 
T Consensus         1 M~I~ViGl-GyvGl~~A~~lA~~G~~V~-g~D~~~--~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~-   75 (185)
T PF03721_consen    1 MKIAVIGL-GYVGLPLAAALAEKGHQVI-GVDIDE--EKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK-   75 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHTTSEEE-EE-S-H--HHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH-
T ss_pred             CEEEEECC-CcchHHHHHHHHhCCCEEE-EEeCCh--HHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh-
Confidence            36778899 8899888888999999977 544432  111                         12334456666444 


Q ss_pred             CCCcEEEEecChhh----------HHHHHHHHHHcCC-cEEEEecCCCCh
Q 019500           98 TKANASAIYVPPPF----------AAAAILEAMEAEL-DLVVCITEGIPQ  136 (340)
Q Consensus        98 ~~vDlavi~vp~~~----------v~~~v~ea~~~Gv-k~vvi~t~Gf~e  136 (340)
                       +.|+++||+|...          +.+++++..+.-- ..++++-|=++.
T Consensus        76 -~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvpp  124 (185)
T PF03721_consen   76 -DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPP  124 (185)
T ss_dssp             -H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSST
T ss_pred             -ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEE
Confidence             4899999998432          4555555554322 345566665543

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.75  E-value=1.2  Score=42.54  Aligned_cols=66  Identities=17%  Similarity=0.060  Sum_probs=44.7

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEE-EeeCCCCCCc---e--------e--------------cCcccccCHHHhhcc
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGT---E--------H--------------LGLPVFNTVAEAKAE   97 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv-~~VnP~~~g~---~--------i--------------~G~p~y~sl~dip~~   97 (340)
                      +|.|+|+ |.||.-++..+...|++++ +-++|.....   .        +              .-+....+++++.  
T Consensus         7 ~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~--   83 (286)
T PRK07819          7 RVGVVGA-GQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDFA--   83 (286)
T ss_pred             EEEEEcc-cHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHhC--
Confidence            6777799 9999999999999999844 4455543100   0        0              1122556776653  


Q ss_pred             CCCcEEEEecChhhHH
Q 019500           98 TKANASAIYVPPPFAA  113 (340)
Q Consensus        98 ~~vDlavi~vp~~~v~  113 (340)
                       ++|+++-++|.+.-.
T Consensus        84 -~~d~ViEav~E~~~~   98 (286)
T PRK07819         84 -DRQLVIEAVVEDEAV   98 (286)
T ss_pred             -CCCEEEEecccCHHH
Confidence             589999999886553

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=88.73  E-value=0.67  Score=37.34  Aligned_cols=82  Identities=17%  Similarity=0.122  Sum_probs=47.2

Q ss_pred             cCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC--CCcee-cCcccccCHHHhhccCCCcEEEEecChhhHHH
Q 019500           38 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK--GGTEH-LGLPVFNTVAEAKAETKANASAIYVPPPFAAA  114 (340)
Q Consensus        38 f~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~--~g~~i-~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~  114 (340)
                      +.-+..+|+|+|. |+.+..-++.|++.|.++. .+.|..  ..+.+ +--..|+  +++.   +.|+++.+++...+-+
T Consensus         3 l~l~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~-vis~~~~~~~~~i~~~~~~~~--~~l~---~~~lV~~at~d~~~n~   75 (103)
T PF13241_consen    3 LDLKGKRVLVVGG-GPVAARKARLLLEAGAKVT-VISPEIEFSEGLIQLIRREFE--EDLD---GADLVFAATDDPELNE   75 (103)
T ss_dssp             E--TT-EEEEEEE-SHHHHHHHHHHCCCTBEEE-EEESSEHHHHTSCEEEESS-G--GGCT---TESEEEE-SS-HHHHH
T ss_pred             EEcCCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCchhhhhhHHHHHhhhHH--HHHh---hheEEEecCCCHHHHH
Confidence            3456678889998 8888888888888898755 677762  00111 1112232  3443   4799999996655544


Q ss_pred             -HHHHHHHcCCcE
Q 019500          115 -AILEAMEAELDL  126 (340)
Q Consensus       115 -~v~ea~~~Gvk~  126 (340)
                       +.++|-+.|+..
T Consensus        76 ~i~~~a~~~~i~v   88 (103)
T PF13241_consen   76 AIYADARARGILV   88 (103)
T ss_dssp             HHHHHHHHTTSEE
T ss_pred             HHHHHHhhCCEEE
Confidence             445555567654

>PLN02583 cinnamoyl-CoA reductase

Probab=88.55  E-value=3.9  Score=38.78  Aligned_cols=30  Identities=17%  Similarity=0.244  Sum_probs=26.1

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEee
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGV   73 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~V   73 (340)
                      .|+|.|++|.+|+.+++.|.+.|++++..+
T Consensus         8 ~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~   37 (297)
T PLN02583          8 SVCVMDASGYVGFWLVKRLLSRGYTVHAAV   37 (297)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEEE
Confidence            578899999999999999999999977444

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=88.53  E-value=1  Score=45.49  Aligned_cols=44  Identities=27%  Similarity=0.324  Sum_probs=32.7

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecC
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLG   84 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G   84 (340)
                      +...|.|+|++|+.|+.+++.|++.||.+.+.|-....-..+.+
T Consensus        78 ~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~  121 (411)
T KOG1203|consen   78 KPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLG  121 (411)
T ss_pred             CCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhc
Confidence            45678888999999999999999999986655544332134444

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=88.41  E-value=1.6  Score=40.99  Aligned_cols=93  Identities=16%  Similarity=0.161  Sum_probs=51.0

Q ss_pred             HHHHHHcCCe-EEEeeCCCCCCce---ecCc--ccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHH-cCCcEEEEec
Q 019500           59 TEQAIEYGTK-MVGGVTPKKGGTE---HLGL--PVFNTVAEAKAETKANASAIYVPPPFAAAAILEAME-AELDLVVCIT  131 (340)
Q Consensus        59 ~~~l~~~G~~-vv~~VnP~~~g~~---i~G~--p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~-~Gvk~vvi~t  131 (340)
                      ++.|++.|+. .|+++|++....+   -.|+  ..+.+.+.+.   +.|++|+|+|.....+++++... ..-..+|.=.
T Consensus         2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~---~~DlvvlavP~~~~~~~l~~~~~~~~~~~iv~Dv   78 (258)
T PF02153_consen    2 ALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVE---DADLVVLAVPVSAIEDVLEEIAPYLKPGAIVTDV   78 (258)
T ss_dssp             HHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGG---CCSEEEE-S-HHHHHHHHHHHHCGS-TTSEEEE-
T ss_pred             hHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhc---CCCEEEEcCCHHHHHHHHHHhhhhcCCCcEEEEe
Confidence            4567777743 4558887651111   1343  2344444443   48999999999999999999988 3444555444


Q ss_pred             CCCChhhHHHHHHHHhccCCcEEEc
Q 019500          132 EGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       132 ~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                      ++....-.+.+.+.. . .+.+++|
T Consensus        79 ~SvK~~~~~~~~~~~-~-~~~~~v~  101 (258)
T PF02153_consen   79 GSVKAPIVEAMERLL-P-EGVRFVG  101 (258)
T ss_dssp             -S-CHHHHHHHHHHH-T-SSGEEEE
T ss_pred             CCCCHHHHHHHHHhc-C-cccceee
Confidence            555444344444443 2 4566554

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=88.38  E-value=3.5  Score=39.92  Aligned_cols=29  Identities=28%  Similarity=0.535  Sum_probs=25.6

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEE
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVG   71 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~   71 (340)
                      .+|+|.|++|-+|+.+++.|.+.|++++.
T Consensus         5 k~ilItGatG~IG~~l~~~L~~~G~~V~~   33 (349)
T TIGR02622         5 KKVLVTGHTGFKGSWLSLWLLELGAEVYG   33 (349)
T ss_pred             CEEEEECCCChhHHHHHHHHHHCCCEEEE
Confidence            46888999999999999999999999763

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.35  E-value=2.2  Score=41.74  Aligned_cols=65  Identities=18%  Similarity=0.152  Sum_probs=43.2

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEE-EeeCCCCCCc---e------------------ecCcccccCHHHhhccCCCc
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGT---E------------------HLGLPVFNTVAEAKAETKAN  101 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv-~~VnP~~~g~---~------------------i~G~p~y~sl~dip~~~~vD  101 (340)
                      +|.|+|+ |.||..++..+...|+++. +-++|.....   .                  ..-+....++++...  +.|
T Consensus         9 ~VaVIGa-G~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~--~aD   85 (321)
T PRK07066          9 TFAAIGS-GVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVA--DAD   85 (321)
T ss_pred             EEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhc--CCC
Confidence            4667799 9999999999999999954 3344332000   0                  011234457777665  589


Q ss_pred             EEEEecChhh
Q 019500          102 ASAIYVPPPF  111 (340)
Q Consensus       102 lavi~vp~~~  111 (340)
                      +++-++|.+.
T Consensus        86 lViEavpE~l   95 (321)
T PRK07066         86 FIQESAPERE   95 (321)
T ss_pred             EEEECCcCCH
Confidence            9999998655

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=88.29  E-value=1.7  Score=36.98  Aligned_cols=28  Identities=21%  Similarity=0.135  Sum_probs=21.8

Q ss_pred             EEEeCCCCCcchHHHHHHHHcC--CeEEEe
Q 019500           45 VICQGITGKNGTFHTEQAIEYG--TKMVGG   72 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~G--~~vv~~   72 (340)
                      |+|.|+||..|+...+.+.++.  |++++.
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~L   30 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKFEVVAL   30 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTEEEEEE
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCceEEEEE
Confidence            4566999999999999888874  776643

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=88.24  E-value=1.3  Score=44.81  Aligned_cols=89  Identities=16%  Similarity=0.051  Sum_probs=61.2

Q ss_pred             eEEEEeCCCCCcchHHHHHHHH-cCCeEEEeeCCCCCCc---------ee------------------cC--cccc--cC
Q 019500           43 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGT---------EH------------------LG--LPVF--NT   90 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~-~G~~vv~~VnP~~~g~---------~i------------------~G--~p~y--~s   90 (340)
                      ++|.|.|. |++|+.+.+.+.+ .++++++.-||....+         .+                  .|  ++++  ++
T Consensus        86 ~kvgInGF-GRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~d  164 (421)
T PLN02272         86 TKIGINGF-GRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKRD  164 (421)
T ss_pred             eEEEEECc-CHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecCC
Confidence            68999999 9999999998875 5788885333532101         11                  12  2223  14


Q ss_pred             HHHhhcc-CCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500           91 VAEAKAE-TKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus        91 l~dip~~-~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      +++++-. .++|+++.++......+.....++.|.|.+||=.+
T Consensus       165 p~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap  207 (421)
T PLN02272        165 PAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAP  207 (421)
T ss_pred             cccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCC
Confidence            5555522 36999999999988888888899999988665433

>PRK08328 hypothetical protein; Provisional

Probab=88.14  E-value=3.2  Score=38.43  Aligned_cols=115  Identities=11%  Similarity=0.092  Sum_probs=63.2

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHh------------hccCCCcEEEEecChh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEA------------KAETKANASAIYVPPP  110 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~di------------p~~~~vDlavi~vp~~  110 (340)
                      .+|+|+|+ |..|..++++|...|..-+..||+..-..+-.+...+-+-+|+            ..+.++|+-|...+..
T Consensus        28 ~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~~  106 (231)
T PRK08328         28 AKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGR  106 (231)
T ss_pred             CcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEecc
Confidence            35777799 8899999999999998756678876521111111121111111            1112466666654443


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCc
Q 019500          111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGV  162 (340)
Q Consensus       111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi  162 (340)
                      ...+.+++.. .+...++..+..+  +....+.+.+ ++++++++--.+.|+
T Consensus       107 ~~~~~~~~~l-~~~D~Vid~~d~~--~~r~~l~~~~-~~~~ip~i~g~~~g~  154 (231)
T PRK08328        107 LSEENIDEVL-KGVDVIVDCLDNF--ETRYLLDDYA-HKKGIPLVHGAVEGT  154 (231)
T ss_pred             CCHHHHHHHH-hcCCEEEECCCCH--HHHHHHHHHH-HHcCCCEEEEeeccC
Confidence            3334444444 3566655333333  2222333444 788899887666664

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=88.11  E-value=1.2  Score=45.15  Aligned_cols=78  Identities=17%  Similarity=0.152  Sum_probs=49.1

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEE-EeeCCCCCC-ceecCcccccCHHHhhccCCCcEEEEecChhhHHHH-HHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGG-TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA-ILEA  119 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv-~~VnP~~~g-~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~-v~ea  119 (340)
                      -+|+|+|+ |.+|..+++.++..|.+++ .-++|.+.. ..-.|..+. ++++...  ..|+++.++....+.+. .-++
T Consensus       203 ktVvViG~-G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~--~aDVVI~atG~~~~i~~~~l~~  278 (413)
T cd00401         203 KVAVVAGY-GDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVK--EGDIFVTTTGNKDIITGEHFEQ  278 (413)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHc--CCCEEEECCCCHHHHHHHHHhc
Confidence            35778899 9999999999999999844 234554410 012455433 3455554  58999999876554332 2444


Q ss_pred             HHcCC
Q 019500          120 MEAEL  124 (340)
Q Consensus       120 ~~~Gv  124 (340)
                      .+.|.
T Consensus       279 mk~Gg  283 (413)
T cd00401         279 MKDGA  283 (413)
T ss_pred             CCCCc
Confidence            45444

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=88.05  E-value=2.6  Score=39.98  Aligned_cols=32  Identities=31%  Similarity=0.467  Sum_probs=27.7

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEee
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGV   73 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~V   73 (340)
                      +..+|+|+|. |+.|+..++.|.+.|.++++.-
T Consensus        37 ~g~~vaIqGf-GnVG~~~a~~L~e~GakvvaVs   68 (254)
T cd05313          37 KGKRVAISGS-GNVAQYAAEKLLELGAKVVTLS   68 (254)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEE
Confidence            4568899999 9999999999999999988653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)

Probab=88.00  E-value=1.5  Score=36.15  Aligned_cols=97  Identities=16%  Similarity=0.139  Sum_probs=52.6

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh------hhHHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP------PFAAAAIL  117 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~------~~v~~~v~  117 (340)
                      +|+|+|- |-....+++.+++.|++.+ .||.+.  +.+.     .   +...   .|-++.--|.      -....+++
T Consensus         4 kvLIanr-Geia~r~~ra~r~~Gi~tv-~v~s~~--d~~s-----~---~~~~---ad~~~~~~~~~~~~~yl~~e~I~~   68 (110)
T PF00289_consen    4 KVLIANR-GEIAVRIIRALRELGIETV-AVNSNP--DTVS-----T---HVDM---ADEAYFEPPGPSPESYLNIEAIID   68 (110)
T ss_dssp             EEEESS--HHHHHHHHHHHHHTTSEEE-EEEEGG--GTTG-----H---HHHH---SSEEEEEESSSGGGTTTSHHHHHH
T ss_pred             EEEEECC-CHHHHHHHHHHHHhCCcce-eccCch--hccc-----c---cccc---cccceecCcchhhhhhccHHHHhh
Confidence            5666675 6566777888999999977 455443  1111     1   1111   3444322111      33455666


Q ss_pred             HHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccC
Q 019500          118 EAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN  158 (340)
Q Consensus       118 ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPN  158 (340)
                      -+.+.|+..++ ---||-. +..++.+.+ +++|+.++||+
T Consensus        69 ia~~~g~~~i~-pGyg~ls-e~~~fa~~~-~~~gi~fiGp~  106 (110)
T PF00289_consen   69 IARKEGADAIH-PGYGFLS-ENAEFAEAC-EDAGIIFIGPS  106 (110)
T ss_dssp             HHHHTTESEEE-STSSTTT-THHHHHHHH-HHTT-EESSS-
T ss_pred             HhhhhcCcccc-cccchhH-HHHHHHHHH-HHCCCEEECcC
Confidence            66666877744 2223422 234455555 58999999997

CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=87.94  E-value=2  Score=42.05  Aligned_cols=89  Identities=12%  Similarity=0.191  Sum_probs=61.4

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee----------cCcc-----------------------c
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH----------LGLP-----------------------V   87 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i----------~G~p-----------------------~   87 (340)
                      ..-|+|+|+ |..|+.++..|.+.|.+.+..|++..-. ...          -|.|                       .
T Consensus        74 ~syVVVVG~-GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~l  152 (430)
T KOG2018|consen   74 NSYVVVVGA-GGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNML  152 (430)
T ss_pred             CcEEEEEec-CchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHHhh
Confidence            445888999 8899999999999999866677775310 000          1222                       1


Q ss_pred             cc--CHHHhhccCCCcEEEEecCh-hhHHHHHHHHHHcCCcEEEEecCCC
Q 019500           88 FN--TVAEAKAETKANASAIYVPP-PFAAAAILEAMEAELDLVVCITEGI  134 (340)
Q Consensus        88 y~--sl~dip~~~~vDlavi~vp~-~~v~~~v~ea~~~Gvk~vvi~t~Gf  134 (340)
                      |.  |=+|+.- .+||.+++|.-. +.-.+.++.|..+|++.  |-+.|.
T Consensus       153 ~~~~s~edll~-gnPdFvvDciDNidtKVdLL~y~~~~~l~V--iss~Ga  199 (430)
T KOG2018|consen  153 WTSSSEEDLLS-GNPDFVVDCIDNIDTKVDLLEYCYNHGLKV--ISSTGA  199 (430)
T ss_pred             cCCCchhhhhc-CCCCeEeEhhhhhhhhhHHHHHHHHcCCce--EeccCc
Confidence            21  2334433 369999999965 66779999999999997  346664

>PRK06487 glycerate dehydrogenase; Provisional

Probab=87.91  E-value=1.3  Score=43.03  Aligned_cols=60  Identities=13%  Similarity=0.046  Sum_probs=45.1

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      .-.|.|+|. |++|+.+++.+..+|.+++ .++|..  .. ... -+.+++++..  ..|++++.+|-
T Consensus       148 gktvgIiG~-G~IG~~vA~~l~~fgm~V~-~~~~~~--~~-~~~-~~~~l~ell~--~sDiv~l~lPl  207 (317)
T PRK06487        148 GKTLGLLGH-GELGGAVARLAEAFGMRVL-IGQLPG--RP-ARP-DRLPLDELLP--QVDALTLHCPL  207 (317)
T ss_pred             CCEEEEECC-CHHHHHHHHHHhhCCCEEE-EECCCC--Cc-ccc-cccCHHHHHH--hCCEEEECCCC
Confidence            335667799 9999999999999999877 567653  11 111 2458999987  48999999995

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=87.89  E-value=1.9  Score=43.93  Aligned_cols=115  Identities=17%  Similarity=0.186  Sum_probs=65.6

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEE-EeeCCCCCC-ceecCcccccCHHHhhccCCCcEEEEecChhhHHH-HHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGG-TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA-AILE  118 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv-~~VnP~~~g-~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~-~v~e  118 (340)
                      .-+|+|+|+ |++|+.+++.++..|.+++ +-++|...- ....|..+. +++++.+  ..|+++.++....+.+ ...+
T Consensus       212 Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~-~l~eal~--~aDVVI~aTG~~~vI~~~~~~  287 (425)
T PRK05476        212 GKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVM-TMEEAAE--LGDIFVTATGNKDVITAEHME  287 (425)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEec-CHHHHHh--CCCEEEECCCCHHHHHHHHHh
Confidence            335778899 9999999999999999844 335664410 112465543 5777765  5899999986544333 2223


Q ss_pred             HHHcCCcEEEEecCCCC-hhhHHHHHHHHhccCCcEEEccCCCCcccC
Q 019500          119 AMEAELDLVVCITEGIP-QHDMVRVKAALNNQSKTRLVGPNCPGVIKP  165 (340)
Q Consensus       119 a~~~Gvk~vvi~t~Gf~-e~~~~~l~~~aar~~girviGPNc~Gi~~p  165 (340)
                      ..+.|  .+++....|. |-+...|.+.+   ...+-++||.-.+.-|
T Consensus       288 ~mK~G--ailiNvG~~d~Eid~~~L~~~~---~~~~~v~~~v~~y~~~  330 (425)
T PRK05476        288 AMKDG--AILANIGHFDNEIDVAALEELA---VKWREIKPQVDEYTLP  330 (425)
T ss_pred             cCCCC--CEEEEcCCCCCccChHHHhhcC---cceeecCCCceEEEeC
Confidence            33333  2333333343 33455554432   1233457775554444

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=87.80  E-value=3.1  Score=40.36  Aligned_cols=92  Identities=17%  Similarity=0.152  Sum_probs=58.9

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC------CCcee---cCccccc----CHHHhhccCCCcEEEEecChh
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK------GGTEH---LGLPVFN----TVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~------~g~~i---~G~p~y~----sl~dip~~~~vDlavi~vp~~  110 (340)
                      +|.|+|+ |-+|....-.|.+.|..+...+.+++      .|-.+   .+.+.++    .-.+..  .+.|++++++.+-
T Consensus         2 kI~IlGa-GAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~--~~~Dlviv~vKa~   78 (307)
T COG1893           2 KILILGA-GAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEAL--GPADLVIVTVKAY   78 (307)
T ss_pred             eEEEECC-cHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhc--CCCCEEEEEeccc
Confidence            5778899 99999999999998844443444442      11111   2211111    111111  2589999999999


Q ss_pred             hHHHHHHHHHHcCC--cEEEEecCCCChhh
Q 019500          111 FAAAAILEAMEAEL--DLVVCITEGIPQHD  138 (340)
Q Consensus       111 ~v~~~v~ea~~~Gv--k~vvi~t~Gf~e~~  138 (340)
                      ...++++.....--  ..++.++-|....+
T Consensus        79 q~~~al~~l~~~~~~~t~vl~lqNG~g~~e  108 (307)
T COG1893          79 QLEEALPSLAPLLGPNTVVLFLQNGLGHEE  108 (307)
T ss_pred             cHHHHHHHhhhcCCCCcEEEEEeCCCcHHH
Confidence            99999888877632  23677788986554

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=87.73  E-value=2.2  Score=43.28  Aligned_cols=41  Identities=20%  Similarity=0.259  Sum_probs=33.8

Q ss_pred             cccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC
Q 019500           34 APAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT   74 (340)
Q Consensus        34 l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn   74 (340)
                      +.-=+.++..+|+|.|++|-.|+.+++.|.+.|++++...+
T Consensus       112 ~~~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr  152 (436)
T PLN02166        112 VPVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDN  152 (436)
T ss_pred             CCcccccCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence            44446778889999999999999999999999999774433

>PLN02494 adenosylhomocysteinase

Probab=87.70  E-value=1.3  Score=45.55  Aligned_cols=97  Identities=14%  Similarity=0.178  Sum_probs=58.1

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEE-eeCCCCC-CceecCcccccCHHHhhccCCCcEEEEecChhhHH-HHHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKG-GTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAA-AAILEA  119 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~-~VnP~~~-g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~-~~v~ea  119 (340)
                      -.|+|+|. |++|+.+++.++.+|.+++. -++|... ...-.|..+. +++++..  ..|+++.++....+. ...-++
T Consensus       255 KtVvViGy-G~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~--~ADVVI~tTGt~~vI~~e~L~~  330 (477)
T PLN02494        255 KVAVICGY-GDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVS--EADIFVTTTGNKDIIMVDHMRK  330 (477)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHh--hCCEEEECCCCccchHHHHHhc
Confidence            45778899 99999999999999998552 2455421 0123455544 5777665  489999887765542 222223


Q ss_pred             HHcCCcEEEEecCCC-ChhhHHHHHHH
Q 019500          120 MEAELDLVVCITEGI-PQHDMVRVKAA  145 (340)
Q Consensus       120 ~~~Gvk~vvi~t~Gf-~e~~~~~l~~~  145 (340)
                      .+.|  ++++....| .+-+...|.+.
T Consensus       331 MK~G--AiLiNvGr~~~eID~~aL~~~  355 (477)
T PLN02494        331 MKNN--AIVCNIGHFDNEIDMLGLETY  355 (477)
T ss_pred             CCCC--CEEEEcCCCCCccCHHHHhhc
Confidence            3333  333334444 35566666554

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=87.60  E-value=11  Score=29.78  Aligned_cols=80  Identities=11%  Similarity=0.057  Sum_probs=46.7

Q ss_pred             EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccc-cCHHHhhccCCCcEEEEecC---hhhHHHHHHHHH
Q 019500           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF-NTVAEAKAETKANASAIYVP---PPFAAAAILEAM  120 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y-~sl~dip~~~~vDlavi~vp---~~~v~~~v~ea~  120 (340)
                      |+|+|.-.+.-...-+.+.++|++.+.- .++.      |..-. ..+.+...  .+|++|+++.   -.....+-+.|-
T Consensus         2 vliVGG~~~~~~~~~~~~~~~G~~~~~h-g~~~------~~~~~~~~l~~~i~--~aD~VIv~t~~vsH~~~~~vk~~ak   72 (97)
T PF10087_consen    2 VLIVGGREDRERRYKRILEKYGGKLIHH-GRDG------GDEKKASRLPSKIK--KADLVIVFTDYVSHNAMWKVKKAAK   72 (97)
T ss_pred             EEEEcCCcccHHHHHHHHHHcCCEEEEE-ecCC------CCccchhHHHHhcC--CCCEEEEEeCCcChHHHHHHHHHHH
Confidence            5677964455555666777889985533 2222      11111 12444333  4799999774   455666777777


Q ss_pred             HcCCcEEEEecCCCC
Q 019500          121 EAELDLVVCITEGIP  135 (340)
Q Consensus       121 ~~Gvk~vvi~t~Gf~  135 (340)
                      +.+++.+  ++.+.+
T Consensus        73 k~~ip~~--~~~~~~   85 (97)
T PF10087_consen   73 KYGIPII--YSRSRG   85 (97)
T ss_pred             HcCCcEE--EECCCC
Confidence            7788864  444443

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=87.55  E-value=4.1  Score=39.92  Aligned_cols=65  Identities=14%  Similarity=0.154  Sum_probs=44.7

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC-CceecCcccccCHHHhhccCCCcEEEEecChh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-GTEHLGLPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~-g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      ...+.|+|. |++|+.+++.+..+|.+++ .-||+.. ..+..+--.|-+++++.+  +.|++++..|..
T Consensus       146 gktvGIiG~-GrIG~avA~r~~~Fgm~v~-y~~~~~~~~~~~~~~~~y~~l~ell~--~sDii~l~~Plt  211 (324)
T COG1052         146 GKTLGIIGL-GRIGQAVARRLKGFGMKVL-YYDRSPNPEAEKELGARYVDLDELLA--ESDIISLHCPLT  211 (324)
T ss_pred             CCEEEEECC-CHHHHHHHHHHhcCCCEEE-EECCCCChHHHhhcCceeccHHHHHH--hCCEEEEeCCCC
Confidence            334556699 9999999999998888866 3444321 112222234555999998  599999999863

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=87.45  E-value=2.1  Score=40.49  Aligned_cols=31  Identities=19%  Similarity=0.128  Sum_probs=25.6

Q ss_pred             EEEeCCCCCcchHHHHHHHHcCCeEEEeeCC
Q 019500           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTP   75 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP   75 (340)
                      |+|.|++|-+|+.+++.|.+.|++++..++.
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~   32 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGITDILVVDN   32 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCCceEEEecC
Confidence            5678999999999999999999975655543

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=87.43  E-value=2.4  Score=37.86  Aligned_cols=30  Identities=20%  Similarity=0.275  Sum_probs=25.2

Q ss_pred             EEEeCCCCCcchHHHHHHHHcCCeEEEeeC
Q 019500           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVT   74 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~G~~vv~~Vn   74 (340)
                      |+|.|++|-.|+.+++.|++.|++++....
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~   30 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSR   30 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEES
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCccccccc
Confidence            568899999999999999999999663443

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=87.41  E-value=9.7  Score=37.97  Aligned_cols=124  Identities=19%  Similarity=0.134  Sum_probs=77.3

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCC----------cee----------------cC-cccccCH
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG----------TEH----------------LG-LPVFNTV   91 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g----------~~i----------------~G-~p~y~sl   91 (340)
                      .+.++|-++|+ |.||+-++.+.... |+++++.-|.+-.+          +++                .| +-+-.+.
T Consensus        15 G~PiRVGlIGA-G~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~   93 (438)
T COG4091          15 GKPIRVGLIGA-GEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDA   93 (438)
T ss_pred             CCceEEEEecc-cccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecch
Confidence            46899999999 99999988877764 88877653322210          010                11 1122345


Q ss_pred             HHhhccCCCcEEEEec-ChhhHHHHHHHHHHcCCcEEEEec----------------------CCCChh--hHHHHHHHH
Q 019500           92 AEAKAETKANASAIYV-PPPFAAAAILEAMEAELDLVVCIT----------------------EGIPQH--DMVRVKAAL  146 (340)
Q Consensus        92 ~dip~~~~vDlavi~v-p~~~v~~~v~ea~~~Gvk~vvi~t----------------------~Gf~e~--~~~~l~~~a  146 (340)
                      +.+.....+|++|.+| -|+.-.++.-+++++|-+.+.+--                      .+..++  -..+|.+++
T Consensus        94 ~~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~GviyS~~~GDeP~~~mEL~efa  173 (438)
T COG4091          94 ELIIANDLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVIYSGGAGDEPSSCMELYEFA  173 (438)
T ss_pred             hhhhcCCcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhhcCeEEeccCCCCcHHHHHHHHHH
Confidence            5555434589999988 456677888999999977654321                      111122  245777876


Q ss_pred             hccCCcEEEccCCCCcccCC
Q 019500          147 NNQSKTRLVGPNCPGVIKPG  166 (340)
Q Consensus       147 ar~~girviGPNc~Gi~~p~  166 (340)
                       +..|+.++--. =|..||-
T Consensus       174 -~a~G~evv~aG-KGkNnpl  191 (438)
T COG4091         174 -SALGFEVVSAG-KGKNNPL  191 (438)
T ss_pred             -HhcCCeEEecc-CCcCCCC
Confidence             77888877433 4555653

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=87.35  E-value=1.2  Score=41.96  Aligned_cols=110  Identities=15%  Similarity=0.178  Sum_probs=66.1

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEe-------eCCCCCCcee----------cC-ccccc-----CH-----
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-------VTPKKGGTEH----------LG-LPVFN-----TV-----   91 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~-------VnP~~~g~~i----------~G-~p~y~-----sl-----   91 (340)
                      .+..+|+|+|. |++|...++.|.+.|.++++.       .||+.  -.+          .. +.-|+     ..     
T Consensus        30 l~g~~v~IqGf-G~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~G--ld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~  106 (244)
T PF00208_consen   30 LEGKRVAIQGF-GNVGSHAARFLAELGAKVVAVSDSSGAIYDPDG--LDVEELLRIKEERGSRVDDYPLESPDGAEYIPN  106 (244)
T ss_dssp             STTCEEEEEES-SHHHHHHHHHHHHTTEEEEEEEESSEEEEETTE--EHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECH
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEecCceEEEcCCC--chHHHHHHHHHHhCCcccccccccccceeEecc
Confidence            45678899999 999999999999999987743       36653  211          12 23333     11     


Q ss_pred             -HHhhccCCCcEEEEec-ChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccC
Q 019500           92 -AEAKAETKANASAIYV-PPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN  158 (340)
Q Consensus        92 -~dip~~~~vDlavi~v-p~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPN  158 (340)
                       +++.+ .++|+.+-|- +.....+.+...++.|+|.++=.+-+.-..+..++   + ++.|+.++ |.
T Consensus       107 ~~~il~-~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~~---L-~~rGI~vi-PD  169 (244)
T PF00208_consen  107 DDEILS-VDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADEI---L-RERGILVI-PD  169 (244)
T ss_dssp             HCHGGT-SSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHHH---H-HHTT-EEE--H
T ss_pred             cccccc-ccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHHH---H-HHCCCEEE-cc
Confidence             13443 3699999886 44555666666778889986644434322222222   2 57787776 54

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK06046 alanine dehydrogenase; Validated

Probab=87.22  E-value=0.76  Score=44.80  Aligned_cols=86  Identities=14%  Similarity=0.099  Sum_probs=58.3

Q ss_pred             CcCCeEEEEeCCCCCcchHHHHHHHH-cCCeEEEeeCCCCCC-c----ee---cC--cccccCHHHhhccCCCcEEEEec
Q 019500           39 VDKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG-T----EH---LG--LPVFNTVAEAKAETKANASAIYV  107 (340)
Q Consensus        39 ~p~~iaViVvGasgk~G~~v~~~l~~-~G~~vv~~VnP~~~g-~----~i---~G--~p~y~sl~dip~~~~vDlavi~v  107 (340)
                      .+....|.|+|+ |.+++.+++.+.. .+.+.++.+|++... +    ++   .|  +.+|++++++.+   .|+++.+|
T Consensus       126 ~~~~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~---aDiVv~aT  201 (326)
T PRK06046        126 RKDSKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD---CDILVTTT  201 (326)
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh---CCEEEEec
Confidence            345667788899 9999999988875 477878788886421 1    11   24  346888998874   89999999


Q ss_pred             ChhhHHHHHHHHHHcCCcEEEE
Q 019500          108 PPPFAAAAILEAMEAELDLVVC  129 (340)
Q Consensus       108 p~~~v~~~v~ea~~~Gvk~vvi  129 (340)
                      |... +=.-.+.++.|.+..-|
T Consensus       202 ps~~-P~~~~~~l~~g~hV~~i  222 (326)
T PRK06046        202 PSRK-PVVKAEWIKEGTHINAI  222 (326)
T ss_pred             CCCC-cEecHHHcCCCCEEEec
Confidence            9754 22224445677765433

>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]

Probab=87.19  E-value=4.1  Score=39.38  Aligned_cols=110  Identities=21%  Similarity=0.253  Sum_probs=65.4

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCC--CCCce---e-----cCcccccCHHHhhccCCCcEEEEecChh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPK--KGGTE---H-----LGLPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~--~~g~~---i-----~G~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      ++.|++.|. |..|....+.+.+. +++++..+|..  +.|++   +     .|+..-.++++.... .+|.++...-.+
T Consensus         2 ~~~vvqyGt-G~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avlAt-l~~~~~y~~~~~   79 (350)
T COG3804           2 SLRVVQYGT-GSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVLAT-LADAVIYAPLLP   79 (350)
T ss_pred             CceeEEecc-chHHHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCCCceeEeecccccceec-cccceeeecccc
Confidence            467888898 89998888877776 99988776533  23333   2     344455556555432 334444333223


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCC-------C-ChhhHHHHHHHHhccCCcEEEcc
Q 019500          111 FAAAAILEAMEAELDLVVCITEG-------I-PQHDMVRVKAALNNQSKTRLVGP  157 (340)
Q Consensus       111 ~v~~~v~ea~~~Gvk~vvi~t~G-------f-~e~~~~~l~~~aar~~girviGP  157 (340)
                      . .+..++|+++|++.+   ++|       | ..+..++..+.++|..+-.+.|-
T Consensus        80 ~-~~~y~rlL~aGiNVv---~~g~~l~yPw~~~PelaeKpl~lAaraGn~Tl~gt  130 (350)
T COG3804          80 S-VDEYARLLRAGINVV---TPGPVLQYPWFYPPELAEKPLELAARAGNATLHGT  130 (350)
T ss_pred             h-HHHHHHHHHcCCcee---ccCccccCCCcCChHHhhchHHHHHhcCCceEEec
Confidence            3 678899999999862   443       2 23334455555534443366553

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=87.07  E-value=2.6  Score=41.28  Aligned_cols=90  Identities=10%  Similarity=-0.128  Sum_probs=59.9

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCe--EEEeeC-C-CCCCcee--cCcccc-cCHHHhhccCCCcEEEEecChhhHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTK--MVGGVT-P-KKGGTEH--LGLPVF-NTVAEAKAETKANASAIYVPPPFAAA  114 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~--vv~~Vn-P-~~~g~~i--~G~p~y-~sl~dip~~~~vDlavi~vp~~~v~~  114 (340)
                      ..+|+| ||+|..|+.+.+.|.+.+|.  -+++++ + ...|+++  .|.... ..+++-.- .++|+++. .+.+...+
T Consensus         3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g~~~~V~~l~~~~f-~~vDia~f-ag~~~s~~   79 (322)
T PRK06901          3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNNKAVEQIAPEEVEW-ADFNYVFF-AGKMAQAE   79 (322)
T ss_pred             cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECCEEEEEEECCccCc-ccCCEEEE-cCHHHHHH
Confidence            346888 99999999999999987763  233444 2 3334433  343221 13333211 26999999 99999999


Q ss_pred             HHHHHHHcCCcEEEEecCCCC
Q 019500          115 AILEAMEAELDLVVCITEGIP  135 (340)
Q Consensus       115 ~v~ea~~~Gvk~vvi~t~Gf~  135 (340)
                      ....+.++|... |--|+-|.
T Consensus        80 ~ap~a~~aG~~V-IDnSsa~R   99 (322)
T PRK06901         80 HLAQAAEAGCIV-IDLYGICA   99 (322)
T ss_pred             HHHHHHHCCCEE-EECChHhh
Confidence            999999999865 44565553

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=87.02  E-value=2.4  Score=39.34  Aligned_cols=34  Identities=29%  Similarity=0.330  Sum_probs=28.4

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT   74 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn   74 (340)
                      .+..+|+|+|. |+.|+..++.|.+.|.++++..+
T Consensus        29 l~~~~v~I~G~-G~VG~~~a~~L~~~g~~vv~v~D   62 (227)
T cd01076          29 LAGARVAIQGF-GNVGSHAARFLHEAGAKVVAVSD   62 (227)
T ss_pred             ccCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEC
Confidence            35678889998 99999999999999999885533

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK14031 glutamate dehydrogenase; Provisional

Probab=86.86  E-value=5.8  Score=40.61  Aligned_cols=34  Identities=24%  Similarity=0.425  Sum_probs=28.5

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCC
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP   75 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP   75 (340)
                      .+..+|+|+|. |+.|+..++.|.+.|.+++ .|.+
T Consensus       226 l~g~rVaVQGf-GNVG~~aA~~L~e~GAkVV-aVSD  259 (444)
T PRK14031        226 LKGKVCLVSGS-GNVAQYTAEKVLELGGKVV-TMSD  259 (444)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEEC
Confidence            45678999999 9999999999999999987 4443

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=86.86  E-value=4.7  Score=44.40  Aligned_cols=118  Identities=14%  Similarity=0.094  Sum_probs=69.7

Q ss_pred             CcCCeEEEEeCCCCCcchHHHHHHHH--------cCCe--EEEeeCCCCCCceecCcc------------cccCHHHhh-
Q 019500           39 VDKNTRVICQGITGKNGTFHTEQAIE--------YGTK--MVGGVTPKKGGTEHLGLP------------VFNTVAEAK-   95 (340)
Q Consensus        39 ~p~~iaViVvGasgk~G~~v~~~l~~--------~G~~--vv~~VnP~~~g~~i~G~p------------~y~sl~dip-   95 (340)
                      ..+.++|+++|. |+.|+.+++.|.+        +|.+  +++..|.+..--.-.|+.            ...+++.+. 
T Consensus       455 ~~~~i~i~l~G~-G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~e  533 (810)
T PRK09466        455 AEKRIGLVLFGK-GNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLFL  533 (810)
T ss_pred             cCceEEEEEEec-CCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHHH
Confidence            446899999999 9999988876543        3544  555554332100111111            111222221 


Q ss_pred             --cc--CCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCC-----ChhhHHHHHHHHhccCCcEEEccCCCC
Q 019500           96 --AE--TKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGI-----PQHDMVRVKAALNNQSKTRLVGPNCPG  161 (340)
Q Consensus        96 --~~--~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf-----~e~~~~~l~~~aar~~girviGPNc~G  161 (340)
                        ..  .+.+++|.+++.+.......+++++|++.+   |+.=     +-+...+|.+.+ +++|.++.=--+.|
T Consensus       534 ~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VV---taNK~~~a~~~~~~~~l~~~a-~~~~~~~~yEasV~  604 (810)
T PRK09466        534 WLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVI---SANKLAGSSPSNFYRQIKDAF-AKTGRHWLYNATVG  604 (810)
T ss_pred             HHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEE---cCCcccccccHHHHHHHHHHH-HHcCCeEEEeceee
Confidence              11  123699999999988888889999999862   4321     123455676665 78888776434444

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=86.70  E-value=4.2  Score=39.17  Aligned_cols=93  Identities=14%  Similarity=0.167  Sum_probs=57.4

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC---------CCcee--cCc-cccc---CHHHhhccCCCcEEEEe
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK---------GGTEH--LGL-PVFN---TVAEAKAETKANASAIY  106 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~---------~g~~i--~G~-p~y~---sl~dip~~~~vDlavi~  106 (340)
                      +++|+|+|+ |-+|....-.|.+.|.++. .|.+..         .|-.+  .|- ..|+   +..+..  .++|+++++
T Consensus         2 ~m~I~IiGa-GaiG~~~a~~L~~~G~~V~-lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~--~~~D~viv~   77 (305)
T PRK05708          2 SMTWHILGA-GSLGSLWACRLARAGLPVR-LILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAA--EPIHRLLLA   77 (305)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCCCeE-EEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccc--cccCEEEEE
Confidence            346788899 9999999999988888754 444321         11111  111 1111   111111  258999999


Q ss_pred             cChhhHHHHHHHHHHc-CC-cEEEEecCCCChhh
Q 019500          107 VPPPFAAAAILEAMEA-EL-DLVVCITEGIPQHD  138 (340)
Q Consensus       107 vp~~~v~~~v~ea~~~-Gv-k~vvi~t~Gf~e~~  138 (340)
                      +......++++..... +- ..++.++-|+..++
T Consensus        78 vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e  111 (305)
T PRK05708         78 CKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQD  111 (305)
T ss_pred             CCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHH
Confidence            9998888888776543 22 23567888996543

>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins

Probab=86.67  E-value=5.8  Score=38.57  Aligned_cols=176  Identities=21%  Similarity=0.235  Sum_probs=83.5

Q ss_pred             cCcccccCHHHhhccCCCcEEEEecCh------hhHHHHHHHHHHcCCcEEEEecCCCC--hhhHHHHHHHHhccCCcEE
Q 019500           83 LGLPVFNTVAEAKAETKANASAIYVPP------PFAAAAILEAMEAELDLVVCITEGIP--QHDMVRVKAALNNQSKTRL  154 (340)
Q Consensus        83 ~G~p~y~sl~dip~~~~vDlavi~vp~------~~v~~~v~ea~~~Gvk~vvi~t~Gf~--e~~~~~l~~~aar~~girv  154 (340)
                      .|+|+|.++++...  .+|..|+-+-+      +...+.+.+|+++|... +   +|+-  -.+..++.+++ +++|.++
T Consensus        18 ~~iPi~~~~~~a~~--~~~~liiGiA~~GG~lp~~w~~~i~~Ai~~Gl~I-v---sGLH~~L~ddpel~~~A-~~~g~~i   90 (301)
T PF07755_consen   18 RGIPIVASLEEAAA--GADTLIIGIAPAGGRLPPSWRPVILEAIEAGLDI-V---SGLHDFLSDDPELAAAA-KKNGVRI   90 (301)
T ss_dssp             S--BEESSHHHHHC--T-SEEEE---STTHCCHCCHHHHHHHHHHTT-EE-E---E-SSS-HCCHHHHHCCH-HCCT--E
T ss_pred             CCCCccCCHHHHhc--CCCEEEEecCcCCCcCCHHHHHHHHHHHHcCCCE-E---ecChhhhccCHHHHHHH-HHcCCeE
Confidence            78999999999943  69999997632      45568999999999875 2   3432  23445565554 7889888


Q ss_pred             EccCCCCcccCC-CcccccCCCCCCCCCcEEEEecChH---H--HHHHHHHHHhCCCCceEEeecCCCC--------CCC
Q 019500          155 VGPNCPGVIKPG-ECKIGIMPGYIHKPGRIGIVSRSGT---L--TYEAVFQTTAVGLGQSTCVGIGGDP--------FNG  220 (340)
Q Consensus       155 iGPNc~Gi~~p~-~~~~~~~~~~~~~~G~valvSQSG~---l--~~~~~~~~~~~giG~S~~vs~Gn~a--------~~d  220 (340)
                      +=-.-     |. ...+..-.....+.=.|..+..+-+   +  +.++.+.++++|+- +.|+.||-..        ..|
T Consensus        91 ~DvR~-----p~~~~~~~~g~~~~~~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~-a~fvaTGQTGimia~~Gv~iD  164 (301)
T PF07755_consen   91 IDVRK-----PPKDLPVASGRIREVKAKRVLTVGTDCAVGKMTTALELRRALRERGIN-AGFVATGQTGIMIAGYGVPID  164 (301)
T ss_dssp             EETTS-------SS-----SGGGG-SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT---EEEEE-SHHHHHCHSEC--GG
T ss_pred             eeccC-----CCcccccccCccccCCCCEEEEEccCccccHHHHHHHHHHHHHHcCCC-ceEEecCCceEEEecCCeecc
Confidence            76552     21 1111110001122334677765543   3  34456677777775 4577777421        011


Q ss_pred             CCH--------HHHHHHhhcCCCccEEEEEEccCCCcHHHH------HHHHHHhCCCCCEEEEEeCCCCC
Q 019500          221 TNF--------VDCVTKFIADPQTEGIILIGEIGGTAEEDA------AALIKESGTEKPIVAFIAGLTAP  276 (340)
Q Consensus       221 v~~--------~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~------~~f~~a~r~~KPVvvlk~Grs~~  276 (340)
                      --.        ..++-...+ ++ ..|++-.++  . +..+      -.++.-.+-..=|+...+||..-
T Consensus       165 av~~DFvaGavE~~v~~~~~-~~-d~ivVEGQg--s-L~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r~~~  229 (301)
T PF07755_consen  165 AVPSDFVAGAVEALVPEAAE-EH-DWIVVEGQG--S-LSHPAYSGVSLGLLHGSQPDALVLCHAPGRKHR  229 (301)
T ss_dssp             GSBGGGHHHHHHHHHHHHCC-C--SEEEEE--S----TTSTTTHHCHHHHHHHH--SEEEEEEETT-SC-
T ss_pred             chhhhhHHHHHHHHHHhhCc-CC-CEEEEeccc--c-ccCccccccchhhhccCCCCeEEEEecCCcccc
Confidence            111        222233333 44 776665553  1 2221      23444444555577777887664

The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=86.65  E-value=2.3  Score=40.87  Aligned_cols=81  Identities=20%  Similarity=0.159  Sum_probs=55.1

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEe-----------------
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIY-----------------  106 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~-----------------  106 (340)
                      +|+|.|++|.+|+.+.+.+. .+++++ +.+.+.     ..+.-..++.++..+.+||++|=+                 
T Consensus         2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~-a~~~~~-----~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~   74 (281)
T COG1091           2 KILITGANGQLGTELRRALP-GEFEVI-ATDRAE-----LDITDPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELAF   74 (281)
T ss_pred             cEEEEcCCChHHHHHHHHhC-CCceEE-eccCcc-----ccccChHHHHHHHHhhCCCEEEECccccccccccCCHHHHH
Confidence            47788999999998888887 567776 454332     233445567777665568888764                 


Q ss_pred             -cChhhHHHHHHHHHHcCCcEEEEecC
Q 019500          107 -VPPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       107 -vp~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                       +++..+..+++.|.+.|.+.|- +|+
T Consensus        75 ~vNa~~~~~lA~aa~~~ga~lVh-iST  100 (281)
T COG1091          75 AVNATGAENLARAAAEVGARLVH-IST  100 (281)
T ss_pred             HhHHHHHHHHHHHHHHhCCeEEE-eec
Confidence             3344556677888888988866 454

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=86.63  E-value=1.6  Score=46.06  Aligned_cols=52  Identities=17%  Similarity=0.256  Sum_probs=34.5

Q ss_pred             CHHHHHHHhhcCCCccEEEEEEccC-CCcHHH---HHHHHHHhC-CCCCEEEEEeCC
Q 019500          222 NFVDCVTKFIADPQTEGIILIGEIG-GTAEED---AAALIKESG-TEKPIVAFIAGL  273 (340)
Q Consensus       222 ~~~d~l~~l~~Dp~T~~I~ly~E~~-g~~~~~---~~~f~~a~r-~~KPVvvlk~Gr  273 (340)
                      ++.+.|+...+||++++|+|.+.+. |.....   -++-++..| .+|||+++--.-
T Consensus        80 ~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~  136 (584)
T TIGR00705        80 DIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTNY  136 (584)
T ss_pred             HHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence            4566677888999999999999853 322222   333333334 689999985443

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=86.58  E-value=5.8  Score=37.46  Aligned_cols=31  Identities=16%  Similarity=0.235  Sum_probs=26.2

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEee
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGV   73 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~V   73 (340)
                      .+|+|.|++|-+|+.+++.|.+.|++++..+
T Consensus         5 ~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~   35 (322)
T PLN02662          5 KVVCVTGASGYIASWLVKLLLQRGYTVKATV   35 (322)
T ss_pred             CEEEEECChHHHHHHHHHHHHHCCCEEEEEE
Confidence            3578899999999999999999999866443

>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]

Probab=86.56  E-value=36  Score=33.80  Aligned_cols=210  Identities=18%  Similarity=0.191  Sum_probs=121.4

Q ss_pred             cccCHHHhhcc-CCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCC--cEEEccCCCCcc
Q 019500           87 VFNTVAEAKAE-TKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSK--TRLVGPNCPGVI  163 (340)
Q Consensus        87 ~y~sl~dip~~-~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~g--irviGPNc~Gi~  163 (340)
                      .|..+..+.++ ....-+|-++...+.+.+.-.|-..|+|+.|++..+-+..-...+     |.+|  +.+.|.|.-=-.
T Consensus        60 A~n~i~~Ls~e~~~~~gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~-----r~~GaeVil~g~~~dda~  134 (347)
T COG1171          60 AYNKLSSLSEEEERAAGVIAASAGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDAT-----RGYGAEVILHGDNFDDAY  134 (347)
T ss_pred             HHHHHHhcChhhhhcCceEEecCCcHHHHHHHHHHHhCCCEEEEecCCCcHHHHHHH-----HhcCCEEEEECCCHHHHH
Confidence            56666776532 245556666667888888888888899999888877664322222     3444  555666531000


Q ss_pred             cCC-----CcccccCCCCCCCCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhc-CCCcc
Q 019500          164 KPG-----ECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIA-DPQTE  237 (340)
Q Consensus       164 ~p~-----~~~~~~~~~~~~~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~-Dp~T~  237 (340)
                      .-.     .-...|.|++.    +--+|.--|+++.++++...+.  -=--+|++|+--   + .+-+..|+.. .|+||
T Consensus       135 ~~a~~~a~~~G~~~i~pfD----~p~viAGQGTi~lEileq~~~~--~d~v~vpvGGGG---L-isGia~~~k~~~p~~~  204 (347)
T COG1171         135 AAAEELAEEEGLTFVPPFD----DPDVIAGQGTIALEILEQLPDL--PDAVFVPVGGGG---L-ISGIATALKALSPEIK  204 (347)
T ss_pred             HHHHHHHHHcCCEEeCCCC----CcceeecccHHHHHHHHhcccc--CCEEEEecCccH---H-HHHHHHHHHHhCCCCe
Confidence            000     00122333321    3346777899999999876543  123478888762   1 2333444443 68899


Q ss_pred             EEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEE-eCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCC
Q 019500          238 GIILIGEIGGTAEEDAAALIKESGTEKPIVAFI-AGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGV  316 (340)
Q Consensus       238 ~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvvlk-~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGv  316 (340)
                      +|.+--|.       +..+.++++.+++++.+. .+.-.. |....+-|         .         ..|+-+-+-..=
T Consensus       205 vIGVEp~~-------a~~~~~Sl~~G~~~~~~~~~~tiaD-G~av~~~g---------~---------~tf~i~~~~vd~  258 (347)
T COG1171         205 VIGVEPEG-------APSMYASLKAGKIVVVLPDVGTIAD-GLAVKRPG---------D---------LTFEILRELVDD  258 (347)
T ss_pred             EEEEeeCC-------ChHHHHHHHcCCceeecCCCCcccc-ccccCCCC---------H---------HHHHHHHHcCCc
Confidence            99887664       345666777787777777 665555 55433444         2         233333222232


Q ss_pred             eecCCHHHHHHHHHHHHHhcC
Q 019500          317 TVVESPAKIGAAMLEVFKQRG  337 (340)
Q Consensus       317 v~v~~~~el~~~~~~~~~~~~  337 (340)
                      ++.=+-+|+.++++.++++.+
T Consensus       259 ~v~V~e~ei~~am~~l~~~~~  279 (347)
T COG1171         259 IVLVDEDEICAAMRDLFERTK  279 (347)
T ss_pred             EEEECHHHHHHHHHHHHhcCC
Confidence            444455778888877776543

>PTZ00117 malate dehydrogenase; Provisional

Probab=86.48  E-value=7.7  Score=37.74  Aligned_cols=85  Identities=14%  Similarity=0.108  Sum_probs=51.5

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcC-CeEEEeeCCCCC---Ccee--------cC----cccccCHHHhhccCCCcEEEE
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKG---GTEH--------LG----LPVFNTVAEAKAETKANASAI  105 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G-~~vv~~VnP~~~---g~~i--------~G----~p~y~sl~dip~~~~vDlavi  105 (340)
                      ..+|.|+|+ |.+|+.+...+...| .+ +..+|.+..   |...        .+    +..+.+.+++.   +.|++|+
T Consensus         5 ~~KI~IIGa-G~vG~~ia~~l~~~~~~~-l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l~---~ADiVVi   79 (319)
T PTZ00117          5 RKKISMIGA-GQIGSTVALLILQKNLGD-VVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDIK---DSDVVVI   79 (319)
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHhC---CCCEEEE
Confidence            447788899 999999888777777 45 335554331   1111        11    22334666654   4799999


Q ss_pred             ec--Ch--------------hhHHHHHHHHHHcCCcEEEEec
Q 019500          106 YV--PP--------------PFAAAAILEAMEAELDLVVCIT  131 (340)
Q Consensus       106 ~v--p~--------------~~v~~~v~ea~~~Gvk~vvi~t  131 (340)
                      +.  |.              ....+++++..+.+-+.++++.
T Consensus        80 tag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivv  121 (319)
T PTZ00117         80 TAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICV  121 (319)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence            88  22              3355677777777767644443

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=86.42  E-value=4.1  Score=40.19  Aligned_cols=88  Identities=17%  Similarity=0.205  Sum_probs=55.2

Q ss_pred             chHHHHHHHHcCCeEEEeeCCCCCC--------ceecCcccccCHHHhhccCCCcEEEEecChhh-HHHHHHHHHHcC-C
Q 019500           55 GTFHTEQAIEYGTKMVGGVTPKKGG--------TEHLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAILEAMEAE-L  124 (340)
Q Consensus        55 G~~v~~~l~~~G~~vv~~VnP~~~g--------~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~-v~~~v~ea~~~G-v  124 (340)
                      |...+.+|.+.|++++ ..|++...        -.-.|+.+..+..+...  +.|++++++|... +.++++.....- -
T Consensus        32 G~~MA~~La~aG~~V~-v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~--~ADvVIlaVP~~~~v~~Vl~~L~~~L~~  108 (342)
T PRK12557         32 GSRMAIEFAEAGHDVV-LAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK--HGEIHILFTPFGKKTVEIAKNILPHLPE  108 (342)
T ss_pred             HHHHHHHHHhCCCeEE-EEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh--CCCEEEEECCCcHHHHHHHHHHHhhCCC
Confidence            4667788888899854 66665410        01246777778877765  5899999999988 777777665442 2


Q ss_pred             cEEEEecCCCChhhH-HHHHHH
Q 019500          125 DLVVCITEGIPQHDM-VRVKAA  145 (340)
Q Consensus       125 k~vvi~t~Gf~e~~~-~~l~~~  145 (340)
                      +.+|+-++..+.... +.+.+.
T Consensus       109 g~IVId~ST~~~~~~s~~l~~~  130 (342)
T PRK12557        109 NAVICNTCTVSPVVLYYSLEGE  130 (342)
T ss_pred             CCEEEEecCCCHHHHHHHHHHH
Confidence            234444444444433 344443

>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain

Probab=86.42  E-value=4.7  Score=34.23  Aligned_cols=91  Identities=12%  Similarity=0.164  Sum_probs=53.0

Q ss_pred             CcchHHHH-HHHHcCCeEEEe-eCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh----hhHHHHHHHHHHcCCcE
Q 019500           53 KNGTFHTE-QAIEYGTKMVGG-VTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP----PFAAAAILEAMEAELDL  126 (340)
Q Consensus        53 k~G~~v~~-~l~~~G~~vv~~-VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~----~~v~~~v~ea~~~Gvk~  126 (340)
                      ..|..++. .|...||++++. ++-.          .=.-++.+.+ +++|++.++.-.    +.++++++++.+.|.+.
T Consensus        16 d~g~~iv~~~l~~~GfeVi~lg~~~s----------~e~~v~aa~e-~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~   84 (132)
T TIGR00640        16 DRGAKVIATAYADLGFDVDVGPLFQT----------PEEIARQAVE-ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPD   84 (132)
T ss_pred             HHHHHHHHHHHHhCCcEEEECCCCCC----------HHHHHHHHHH-cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCC
Confidence            35555544 455579997631 1100          0012344444 489999998744    45666777777777644


Q ss_pred             EEEecCCC-ChhhHHHHHHHHhccCCc-EEEccCC
Q 019500          127 VVCITEGI-PQHDMVRVKAALNNQSKT-RLVGPNC  159 (340)
Q Consensus       127 vvi~t~Gf-~e~~~~~l~~~aar~~gi-rviGPNc  159 (340)
                      +.++..|. ++++.+++     ++.|+ ++++|.+
T Consensus        85 i~vivGG~~~~~~~~~l-----~~~Gvd~~~~~gt  114 (132)
T TIGR00640        85 ILVVVGGVIPPQDFDEL-----KEMGVAEIFGPGT  114 (132)
T ss_pred             CEEEEeCCCChHhHHHH-----HHCCCCEEECCCC
Confidence            44556664 44444443     46777 6888886

Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=86.40  E-value=4.4  Score=36.83  Aligned_cols=99  Identities=14%  Similarity=0.043  Sum_probs=66.5

Q ss_pred             CcccccCcCCeEEEEeCCCCCcchHHHHHHHHcC-CeEEEee------CCCCCCcee-cCcccccCHHHhhcc-CCCcEE
Q 019500           33 PAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYG-TKMVGGV------TPKKGGTEH-LGLPVFNTVAEAKAE-TKANAS  103 (340)
Q Consensus        33 ~l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G-~~vv~~V------nP~~~g~~i-~G~p~y~sl~dip~~-~~vDla  103 (340)
                      ||+.=|.-++..+.|.||||-.|+-..+.+.+.+ |..|+.+      +|... +.+ .-..=|..+++..+. ..+|+.
T Consensus         9 klrEDf~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at~-k~v~q~~vDf~Kl~~~a~~~qg~dV~   87 (238)
T KOG4039|consen    9 KLREDFRMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPATD-KVVAQVEVDFSKLSQLATNEQGPDVL   87 (238)
T ss_pred             HHHHHHhhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCcccc-ceeeeEEechHHHHHHHhhhcCCceE
Confidence            4555566667777888999999999999988874 5544443      33321 111 111223446666543 468988


Q ss_pred             EEec---------------ChhhHHHHHHHHHHcCCcEEEEecC
Q 019500          104 AIYV---------------PPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       104 vi~v---------------p~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      .-+.               -.+.+....+.|-++|++.++.+++
T Consensus        88 FcaLgTTRgkaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS  131 (238)
T KOG4039|consen   88 FCALGTTRGKAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSS  131 (238)
T ss_pred             EEeecccccccccCceEeechHHHHHHHHHHHhCCCeEEEEEec
Confidence            7653               4567888999999999999888876

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=86.29  E-value=6.2  Score=38.88  Aligned_cols=109  Identities=19%  Similarity=0.158  Sum_probs=64.1

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHc--------CC--eEEEeeCCCCCCc-eecCcc---cccCH-----HHhhccCCCc
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEY--------GT--KMVGGVTPKKGGT-EHLGLP---VFNTV-----AEAKAETKAN  101 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~--------G~--~vv~~VnP~~~g~-~i~G~p---~y~sl-----~dip~~~~vD  101 (340)
                      +.++|.|+|. |..|+.+++.|.+.        |.  +++...+.+..-. .+.+.+   ...+.     .++.....+|
T Consensus         2 ~~v~v~l~G~-G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   80 (333)
T COG0460           2 KTVKVGLLGL-GTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDID   80 (333)
T ss_pred             ceEEEEEEcc-CchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCC
Confidence            5678899999 99999888876642        33  4555555543101 122222   11223     3333333688


Q ss_pred             EEEEecCh--hhH--HHHHHHHHHcCCcEEEEecCC---CChhhHHHHHHHHhccCCcEEE
Q 019500          102 ASAIYVPP--PFA--AAAILEAMEAELDLVVCITEG---IPQHDMVRVKAALNNQSKTRLV  155 (340)
Q Consensus       102 lavi~vp~--~~v--~~~v~ea~~~Gvk~vvi~t~G---f~e~~~~~l~~~aar~~girvi  155 (340)
                      +++-.++.  +..  .+.+.+++++|.+.   .|+.   ++.. -.+|.+.+ +++|..+.
T Consensus        81 vvve~~~~d~~~~~~~~~~~~al~~GkhV---VTaNK~~lA~~-~~el~~~A-~~~g~~l~  136 (333)
T COG0460          81 VVVELVGGDVEPAEPADLYLKALENGKHV---VTANKALLALH-YHELREAA-EKNGVKLL  136 (333)
T ss_pred             EEEecCcccCCchhhHHHHHHHHHcCCeE---ECCCchHhHhh-HHHHHHHH-HHhCCeEE
Confidence            88877665  233  48899999999875   3553   2222 44566655 67775554

>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit

Probab=86.16  E-value=4.5  Score=34.65  Aligned_cols=95  Identities=18%  Similarity=0.157  Sum_probs=55.2

Q ss_pred             CcchHHHH-HHHHcCCeEEEe-eCCCCCCceecCcccccCHHHhhccCCCcEEEEec----ChhhHHHHHHHHHHcCCcE
Q 019500           53 KNGTFHTE-QAIEYGTKMVGG-VTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYV----PPPFAAAAILEAMEAELDL  126 (340)
Q Consensus        53 k~G~~v~~-~l~~~G~~vv~~-VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~v----p~~~v~~~v~ea~~~Gvk~  126 (340)
                      ..|..+.. .|.+.||++++. ++-..  +++        ++.+.+ +++|++-+..    .-....++++.+-++|.+.
T Consensus        15 diGk~iv~~~l~~~GfeVi~LG~~v~~--e~~--------v~aa~~-~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~   83 (134)
T TIGR01501        15 AVGNKILDHAFTNAGFNVVNLGVLSPQ--EEF--------IKAAIE-TKADAILVSSLYGHGEIDCKGLRQKCDEAGLEG   83 (134)
T ss_pred             hHhHHHHHHHHHHCCCEEEECCCCCCH--HHH--------HHHHHH-cCCCEEEEecccccCHHHHHHHHHHHHHCCCCC
Confidence            35655444 556679997742 22111  111        344444 4789887754    3345677778888888755


Q ss_pred             EEEecCC---CChhhHHHHHHHHhccCCcE-EEccCC
Q 019500          127 VVCITEG---IPQHDMVRVKAALNNQSKTR-LVGPNC  159 (340)
Q Consensus       127 vvi~t~G---f~e~~~~~l~~~aar~~gir-viGPNc  159 (340)
                      ..|+-.|   +++++..+..+.+ ++.|+. +.||..
T Consensus        84 ~~vivGG~~vi~~~d~~~~~~~l-~~~Gv~~vF~pgt  119 (134)
T TIGR01501        84 ILLYVGGNLVVGKQDFPDVEKRF-KEMGFDRVFAPGT  119 (134)
T ss_pred             CEEEecCCcCcChhhhHHHHHHH-HHcCCCEEECcCC
Confidence            5455566   4666655443444 677764 777764

This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.

>PRK04148 hypothetical protein; Provisional

Probab=86.14  E-value=1.6  Score=37.43  Aligned_cols=83  Identities=22%  Similarity=0.250  Sum_probs=51.3

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEe-eCCCCCCce--ecCcccccCHHHhhcc-----CCCcEEEEecCh-hh
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGTE--HLGLPVFNTVAEAKAE-----TKANASAIYVPP-PF  111 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~-VnP~~~g~~--i~G~p~y~sl~dip~~-----~~vDlavi~vp~-~~  111 (340)
                      +..+|+++|+ | .|..++..|.+.|+++++. +||+.- +.  -.++.+.  .+|+.++     .+.|++.-..|| +.
T Consensus        16 ~~~kileIG~-G-fG~~vA~~L~~~G~~ViaIDi~~~aV-~~a~~~~~~~v--~dDlf~p~~~~y~~a~liysirpp~el   90 (134)
T PRK04148         16 KNKKIVELGI-G-FYFKVAKKLKESGFDVIVIDINEKAV-EKAKKLGLNAF--VDDLFNPNLEIYKNAKLIYSIRPPRDL   90 (134)
T ss_pred             cCCEEEEEEe-c-CCHHHHHHHHHCCCEEEEEECCHHHH-HHHHHhCCeEE--ECcCCCCCHHHHhcCCEEEEeCCCHHH
Confidence            3456888899 6 7877888999999997743 566531 10  1122222  2222211     257998888876 55


Q ss_pred             HHHHHHHHHHcCCcEEE
Q 019500          112 AAAAILEAMEAELDLVV  128 (340)
Q Consensus       112 v~~~v~ea~~~Gvk~vv  128 (340)
                      ++.+++-|-+.|+..++
T Consensus        91 ~~~~~~la~~~~~~~~i  107 (134)
T PRK04148         91 QPFILELAKKINVPLII  107 (134)
T ss_pred             HHHHHHHHHHcCCCEEE
Confidence            66666666677888744

>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=86.09  E-value=3.5  Score=40.60  Aligned_cols=87  Identities=18%  Similarity=0.139  Sum_probs=59.9

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCC---------ce-----------------ecC--cccc--cCH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG---------TE-----------------HLG--LPVF--NTV   91 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g---------~~-----------------i~G--~p~y--~sl   91 (340)
                      ++|.|.|. |++|+.+.|.+.+. ++++++ ||--..-         ++                 +.|  ++++  +++
T Consensus         3 ~~i~inGf-GRIGr~~~r~~~~~~~~~vva-iNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp   80 (331)
T PRK15425          3 IKVGINGF-GRIGRIVFRAAQKRSDIEIVA-INDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP   80 (331)
T ss_pred             eEEEEEee-ChHHHHHHHHHHHCCCCEEEE-EecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCCh
Confidence            58889999 99999999986643 677774 3321100         00                 123  2334  257


Q ss_pred             HHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500           92 AEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus        92 ~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      +++|= +.++|+++.|+......+.+...++.|++.++ +|+
T Consensus        81 ~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~-iSa  121 (331)
T PRK15425         81 ANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVV-MTG  121 (331)
T ss_pred             hhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEE-eCC
Confidence            77763 24699999999999888889999999999865 454

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=85.83  E-value=3.6  Score=39.12  Aligned_cols=82  Identities=18%  Similarity=0.145  Sum_probs=48.9

Q ss_pred             EeCCCCCcchHHHHHHHHcC--CeEEEeeC--CCCCC----cee-------cCcccccCHHHhhccCCCcEEEEec---C
Q 019500           47 CQGITGKNGTFHTEQAIEYG--TKMVGGVT--PKKGG----TEH-------LGLPVFNTVAEAKAETKANASAIYV---P  108 (340)
Q Consensus        47 VvGasgk~G~~v~~~l~~~G--~~vv~~Vn--P~~~g----~~i-------~G~p~y~sl~dip~~~~vDlavi~v---p  108 (340)
                      |.|++|-+|+.+++.|++.|  +++. .++  +...-    ...       ..+.-+.++.++.+  ++|+++-+-   +
T Consensus         2 VTGgsGflG~~iv~~Ll~~g~~~~Vr-~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~--g~d~V~H~Aa~~~   78 (280)
T PF01073_consen    2 VTGGSGFLGSHIVRQLLERGYIYEVR-VLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALE--GVDVVFHTAAPVP   78 (280)
T ss_pred             EEcCCcHHHHHHHHHHHHCCCceEEE-EcccccccccchhhhcccceeEEEeccccHHHHHHHhc--CCceEEEeCcccc
Confidence            56999999999999999998  5543 332  22100    001       12223335555555  578776652   1


Q ss_pred             h--------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          109 P--------------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       109 ~--------------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      .              +.+..+++.|.+.||+.+| +|+
T Consensus        79 ~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlV-ytS  115 (280)
T PF01073_consen   79 PWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLV-YTS  115 (280)
T ss_pred             ccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEE-EEc
Confidence            1              2234577888888888865 444

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PRK10949 protease 4; Provisional

Probab=85.69  E-value=3.3  Score=44.17  Aligned_cols=95  Identities=15%  Similarity=0.106  Sum_probs=49.8

Q ss_pred             CHHHHHHHhhcCCCccEEEEEEccCC-CcH---HHHHHHHHHhC-CCCCEEEEEeCCCCCCCCc-ccccCcccccccccc
Q 019500          222 NFVDCVTKFIADPQTEGIILIGEIGG-TAE---EDAAALIKESG-TEKPIVAFIAGLTAPPGRR-MGHAGVDVYTIFGSA  295 (340)
Q Consensus       222 ~~~d~l~~l~~Dp~T~~I~ly~E~~g-~~~---~~~~~f~~a~r-~~KPVvvlk~Grs~~~g~~-~sHtg~~~~~~~~~a  295 (340)
                      ++.+.|+...+||+.+.|+|.+++.| ...   ++-++-++..| .+|||+++--.- ...+-- +||+. +.|-.=-..
T Consensus        99 div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~~~~~-~s~~YyLASaAD-~I~l~P~G~  176 (618)
T PRK10949         99 DIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAVGDSY-SQGQYYLASFAN-KIYLSPQGV  176 (618)
T ss_pred             HHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEEecCc-cchhhhhhhhCC-EEEECCCce
Confidence            44555666778999999999999863 222   22333333334 689999983222 221211 33332 000000002


Q ss_pred             eecCCC-CcHHHHHHHHHHcCCee
Q 019500          296 IVSGGK-GTAQDKIKTLREAGVTV  318 (340)
Q Consensus       296 la~~~~-g~~~~~~a~~~qaGvv~  318 (340)
                      +...+- ....-+..+|++.||-.
T Consensus       177 v~~~G~~~~~~~~k~lLdKlGV~~  200 (618)
T PRK10949        177 VDLHGFATNGLYYKSLLDKLKVST  200 (618)
T ss_pred             EEEeeeecchhhHHHHHHHcCCeE
Confidence            211111 13345789999999874

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=85.66  E-value=2.6  Score=38.16  Aligned_cols=118  Identities=18%  Similarity=0.141  Sum_probs=63.4

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce-ecCcccccC------------HHHhhccCCCcEEEEecC
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-HLGLPVFNT------------VAEAKAETKANASAIYVP  108 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~-i~G~p~y~s------------l~dip~~~~vDlavi~vp  108 (340)
                      +.+|+|+|+ |..|..++++|...|..-+..+|...-..+ +.-...|..            +.+-..+.+||+-+...+
T Consensus        19 ~s~VlviG~-gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~   97 (198)
T cd01485          19 SAKVLIIGA-GALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVE   97 (198)
T ss_pred             hCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence            346778899 559999999999999885657776542111 111111111            111121224566555443


Q ss_pred             hhhH--HHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCccc
Q 019500          109 PPFA--AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK  164 (340)
Q Consensus       109 ~~~v--~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~  164 (340)
                      ....  .+...+..+ .... |+.+.. +.+....+.+.+ ++++++++-..|.|+.-
T Consensus        98 ~~~~~~~~~~~~~~~-~~dv-Vi~~~d-~~~~~~~ln~~c-~~~~ip~i~~~~~G~~G  151 (198)
T cd01485          98 EDSLSNDSNIEEYLQ-KFTL-VIATEE-NYERTAKVNDVC-RKHHIPFISCATYGLIG  151 (198)
T ss_pred             cccccchhhHHHHHh-CCCE-EEECCC-CHHHHHHHHHHH-HHcCCCEEEEEeecCEE
Confidence            2221  233333332 4454 434433 233344455665 78899988877777653

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=85.65  E-value=4  Score=44.95  Aligned_cols=112  Identities=15%  Similarity=0.149  Sum_probs=67.9

Q ss_pred             CcCCeEEEEeCCCCCcchHHHHHHHH-------cCCe--EEEeeCCCCCCceecCccc--c----------cCHHH---h
Q 019500           39 VDKNTRVICQGITGKNGTFHTEQAIE-------YGTK--MVGGVTPKKGGTEHLGLPV--F----------NTVAE---A   94 (340)
Q Consensus        39 ~p~~iaViVvGasgk~G~~v~~~l~~-------~G~~--vv~~VnP~~~g~~i~G~p~--y----------~sl~d---i   94 (340)
                      ..+.++|+++|. |..|+.+++.+.+       .|++  +++..|.+..--.-.|+..  +          .++++   +
T Consensus       462 ~~~~~~i~l~G~-G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  540 (819)
T PRK09436        462 SDQVLDVFVIGV-GGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAGEPFDLDRLIRL  540 (819)
T ss_pred             ccccccEEEEec-CHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhccCCCCHHHHHHH
Confidence            447899999998 9999988876543       2443  5554443220000112110  0          11222   2


Q ss_pred             hcc--CCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCC---CCh--hhHHHHHHHHhccCCcEEE
Q 019500           95 KAE--TKANASAIYVPPPFAAAAILEAMEAELDLVVCITEG---IPQ--HDMVRVKAALNNQSKTRLV  155 (340)
Q Consensus        95 p~~--~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~G---f~e--~~~~~l~~~aar~~girvi  155 (340)
                      ...  .+.|++|.|++.........+++++|++.+   |+.   .+.  +...+|.+.+ +++|.++.
T Consensus       541 ~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VV---taNK~~~a~~~~~~~el~~~a-~~~~~~~~  604 (819)
T PRK09436        541 VKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVV---TPNKKANTSSYAYYHQLREAA-RKSRRKFL  604 (819)
T ss_pred             HhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEE---cCCchhccCCHHHHHHHHHHH-HHcCCeEE
Confidence            211  124899999999888889999999999862   442   221  3456677665 78887766

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=85.51  E-value=4.3  Score=40.18  Aligned_cols=36  Identities=14%  Similarity=0.082  Sum_probs=28.9

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~   77 (340)
                      +..+|+|+|+ |..|..++++|...|+.-+..||+..
T Consensus        27 ~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         27 FDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             hCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            3456888899 88999999999999987555777654

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=85.50  E-value=4.8  Score=38.45  Aligned_cols=145  Identities=15%  Similarity=0.168  Sum_probs=79.8

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCccccc-----------CHHHhhccCCCcEEEEecChh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN-----------TVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~-----------sl~dip~~~~vDlavi~vp~~  110 (340)
                      ..+|+|+|+ |..|..++++|...|..-+..||+..-...-.+...+.           -+.+-..+.+|++-|...+..
T Consensus        30 ~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~  108 (268)
T PRK15116         30 DAHICVVGI-GGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDF  108 (268)
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecc
Confidence            445777799 88999999999999976455777654211111222221           122222223467666666554


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCc---ccCCCcccccCCCCCCCCCcEEEEe
Q 019500          111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGV---IKPGECKIGIMPGYIHKPGRIGIVS  187 (340)
Q Consensus       111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi---~~p~~~~~~~~~~~~~~~G~valvS  187 (340)
                      ..++.+++....+...+| .+.+-. .....+.+.+ ++++++++-  |+|.   ++|.++.             |+=++
T Consensus       109 i~~e~~~~ll~~~~D~VI-daiD~~-~~k~~L~~~c-~~~~ip~I~--~gGag~k~dp~~~~-------------~~di~  170 (268)
T PRK15116        109 ITPDNVAEYMSAGFSYVI-DAIDSV-RPKAALIAYC-RRNKIPLVT--TGGAGGQIDPTQIQ-------------VVDLA  170 (268)
T ss_pred             cChhhHHHHhcCCCCEEE-EcCCCH-HHHHHHHHHH-HHcCCCEEE--ECCcccCCCCCeEE-------------EEeee
Confidence            445666666655666644 454432 2233455665 788898873  3443   3333222             34444


Q ss_pred             cCh--HHHHHHHHHHHh-CCC
Q 019500          188 RSG--TLTYEAVFQTTA-VGL  205 (340)
Q Consensus       188 QSG--~l~~~~~~~~~~-~gi  205 (340)
                      ++-  .|+..+-..+++ +|+
T Consensus       171 ~t~~~pla~~~R~~lr~~~~~  191 (268)
T PRK15116        171 KTIQDPLAAKLRERLKSDFGV  191 (268)
T ss_pred             cccCChHHHHHHHHHHHhhCC
Confidence            443  355566666665 455

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=85.46  E-value=2  Score=43.15  Aligned_cols=77  Identities=13%  Similarity=0.138  Sum_probs=51.1

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCc-----ccccCHHHhhccCCCcEEEEecChhhHHHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGL-----PVFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~-----p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e  118 (340)
                      +|.|+|. |..|..+++.|.+.|++++ +.|++.  ....-.     ....+.+.+++  +.|++|.+.+....-+.+++
T Consensus         5 ~i~iiGl-G~~G~slA~~l~~~G~~V~-g~D~~~--~~~~~~~~~~~~~~~~~~~~~~--~~dlvV~s~gi~~~~~~l~~   78 (418)
T PRK00683          5 RVVVLGL-GVTGKSIARFLAQKGVYVI-GVDKSL--EALQSCPYIHERYLENAEEFPE--QVDLVVRSPGIKKEHPWVQA   78 (418)
T ss_pred             eEEEEEE-CHHHHHHHHHHHHCCCEEE-EEeCCc--cccchhHHHhhhhcCCcHHHhc--CCCEEEECCCCCCCcHHHHH
Confidence            4677798 8888888899999998755 677554  211111     11223334443  47999888766555678889


Q ss_pred             HHHcCCcE
Q 019500          119 AMEAELDL  126 (340)
Q Consensus       119 a~~~Gvk~  126 (340)
                      |.++|++.
T Consensus        79 A~~~g~~v   86 (418)
T PRK00683         79 AIASHIPV   86 (418)
T ss_pred             HHHCCCcE
Confidence            99988863

>PRK14851 hypothetical protein; Provisional

Probab=85.41  E-value=3.6  Score=44.35  Aligned_cols=111  Identities=12%  Similarity=0.082  Sum_probs=55.2

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce-----e------cCcccccCHHHhhccCCCcEEEEecChh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-----H------LGLPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~-----i------~G~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      ..+|+|+|+ |..|+.++.+|...|..-+..||+..-...     +      .|.+--.-+++...+.++++-|.+.+..
T Consensus        43 ~~~VlIvG~-GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~  121 (679)
T PRK14851         43 EAKVAIPGM-GGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAG  121 (679)
T ss_pred             cCeEEEECc-CHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecC
Confidence            446777799 779999999999988764445554431110     0      1211111122222122345555555544


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEE
Q 019500          111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (340)
Q Consensus       111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi  155 (340)
                      ...+.+.+.++ ++..||-.+..|+-+....+.+.+ +++++.++
T Consensus       122 i~~~n~~~~l~-~~DvVid~~D~~~~~~r~~l~~~c-~~~~iP~i  164 (679)
T PRK14851        122 INADNMDAFLD-GVDVVLDGLDFFQFEIRRTLFNMA-REKGIPVI  164 (679)
T ss_pred             CChHHHHHHHh-CCCEEEECCCCCcHHHHHHHHHHH-HHCCCCEE
Confidence            44455555554 566544333222222222333443 56677666

>PRK10433 putative RNA methyltransferase; Provisional

Probab=85.30  E-value=11  Score=35.05  Aligned_cols=35  Identities=11%  Similarity=0.041  Sum_probs=26.0

Q ss_pred             CeEEEEeCCC--CCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500           42 NTRVICQGIT--GKNGTFHTEQAIEYGTKMVGGVTPKK   77 (340)
Q Consensus        42 ~iaViVvGas--gk~G~~v~~~l~~~G~~vv~~VnP~~   77 (340)
                      .++||++...  ++.| .++|.+.++|+.-++.|||+.
T Consensus         2 ~i~vVLv~p~~p~NiG-aiaRam~nfG~~~L~lV~p~~   38 (228)
T PRK10433          2 RLTIILVAPARAENVG-AAARAMKTMGFSELRIVDSQA   38 (228)
T ss_pred             ceEEEEEcCCCCccHH-HHHHHHHHCCCCEEEEeCCCC
Confidence            4678888873  2344 467899999998666899985

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=85.03  E-value=5.5  Score=37.14  Aligned_cols=30  Identities=20%  Similarity=0.375  Sum_probs=25.8

Q ss_pred             EEEeCCCCCcchHHHHHHHHcCCeEEEeeCC
Q 019500           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTP   75 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP   75 (340)
                      |+|.|++|-.|+.+++.|.+.|++++ .++.
T Consensus         3 ILVtG~tGfiG~~l~~~L~~~g~~V~-~~~r   32 (314)
T COG0451           3 ILVTGGAGFIGSHLVERLLAAGHDVR-GLDR   32 (314)
T ss_pred             EEEEcCcccHHHHHHHHHHhCCCeEE-EEeC
Confidence            78889999999999999999999877 4443

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=85.01  E-value=0.63  Score=41.46  Aligned_cols=63  Identities=16%  Similarity=0.117  Sum_probs=40.2

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce---------------------------ecCcccccCHHHhhc
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---------------------------HLGLPVFNTVAEAKA   96 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~---------------------------i~G~p~y~sl~dip~   96 (340)
                      +|.|+|+ |.||+.++..+...|+++. .++++....+                           ...+....+++++. 
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~-l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-   77 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARAGYEVT-LYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-   77 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTSEEE-EE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCCcEE-EEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-
Confidence            4667799 9999999999999999954 4444331000                           12344556777776 


Q ss_pred             cCCCcEEEEecChhh
Q 019500           97 ETKANASAIYVPPPF  111 (340)
Q Consensus        97 ~~~vDlavi~vp~~~  111 (340)
                        +.|+++-++|.+.
T Consensus        78 --~adlViEai~E~l   90 (180)
T PF02737_consen   78 --DADLVIEAIPEDL   90 (180)
T ss_dssp             --TESEEEE-S-SSH
T ss_pred             --hhheehhhccccH
Confidence              3899999998754

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor

Probab=84.99  E-value=27  Score=33.97  Aligned_cols=145  Identities=13%  Similarity=0.099  Sum_probs=83.3

Q ss_pred             ecChhhHHHHHHHHHHcCCcEEEEecCCCChhh---HHHHHHHHhccCCcEEEccCCCC--cccCCCccccc--CCCC--
Q 019500          106 YVPPPFAAAAILEAMEAELDLVVCITEGIPQHD---MVRVKAALNNQSKTRLVGPNCPG--VIKPGECKIGI--MPGY--  176 (340)
Q Consensus       106 ~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~---~~~l~~~aar~~girviGPNc~G--i~~p~~~~~~~--~~~~--  176 (340)
                      ..|++.+..+.+++++.++-+++ +....+...   .......+ .+.++++|.|.+--  +-+.......+  .|..  
T Consensus        63 ~~~~~~a~~~~~~Li~~~V~aii-~~~~~ss~~~~~~~~v~~~~-~~~~iP~Is~~a~~~~ls~~~~~~~~~R~~psd~~  140 (377)
T cd06379          63 PNPIQTALSVCEQLISNQVYAVI-VSHPPTSNDHLTPTSVSYTA-GFYRIPVVGISTRDSIFSDKNIHLSFLRTVPPYSH  140 (377)
T ss_pred             CChhhHHHHHHHHHhhcceEEEE-EeCCCCCcccccHHHHHHHh-hCCCCcEEecccCCccccCccccccEEEecCCHHH
Confidence            45677777777787777776644 322212111   22223333 67899999886522  11211111111  1110  


Q ss_pred             ----------CCCCCcEEEEecChHH----HHHHHHHHHhCCC----CceEEeecCCCCCCCCCHHHHHHHhhcCCCccE
Q 019500          177 ----------IHKPGRIGIVSRSGTL----TYEAVFQTTAVGL----GQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEG  238 (340)
Q Consensus       177 ----------~~~~G~valvSQSG~l----~~~~~~~~~~~gi----G~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~  238 (340)
                                ....-.|++|.++...    ...+.+.+++.|+    -+......-..   +.++...|.-+.. .+.++
T Consensus       141 ~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~---~~d~~~~l~~ik~-~~~~v  216 (377)
T cd06379         141 QADVWLEMLRSFKWNKVILLVSDDHEGRAAQKRFETLLEEREIEFKIKVEKVVEFEPG---EKNVTSLLQEAKE-LTSRV  216 (377)
T ss_pred             HHHHHHHHHHHcCCeEEEEEEEcCcchhHHHHHHHHHHHhcCCccceeeeEEEecCCc---hhhHHHHHHHHhh-cCCeE
Confidence                      1455689999998763    3445556666776    44444444222   4567777877754 56788


Q ss_pred             EEEEEccCCCcHHHHHHHHHHhC
Q 019500          239 IILIGEIGGTAEEDAAALIKESG  261 (340)
Q Consensus       239 I~ly~E~~g~~~~~~~~f~~a~r  261 (340)
                      |+++..     ..++..|+++++
T Consensus       217 Ivl~~~-----~~~~~~l~~qa~  234 (377)
T cd06379         217 ILLSAS-----EDDAAVIYRNAG  234 (377)
T ss_pred             EEEEcC-----HHHHHHHHHHHH
Confidence            888866     468889998875

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=84.83  E-value=1.9  Score=42.53  Aligned_cols=59  Identities=10%  Similarity=0.010  Sum_probs=41.1

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHH--HhhccCCCcEEEEe
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVA--EAKAETKANASAIY  106 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~--dip~~~~vDlavi~  106 (340)
                      ..-+|+|+|+ |.||...+++|.+.|+..++.+|...  ..    .-|..+.  .+.-..+.|++|.+
T Consensus       173 ~~k~vLvIGa-Gem~~l~a~~L~~~g~~~i~v~nRt~--~~----~~~~~~~~~~~~~~~~~DvVIs~  233 (338)
T PRK00676        173 KKASLLFIGY-SEINRKVAYYLQRQGYSRITFCSRQQ--LT----LPYRTVVREELSFQDPYDVIFFG  233 (338)
T ss_pred             cCCEEEEEcc-cHHHHHHHHHHHHcCCCEEEEEcCCc--cc----cchhhhhhhhhhcccCCCEEEEc
Confidence            3457888899 99999999999999987666899886  21    1133322  11111258999986

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=84.61  E-value=5.9  Score=37.06  Aligned_cols=35  Identities=20%  Similarity=0.224  Sum_probs=27.9

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~   77 (340)
                      ..+|+|+|+ |..|..++++|...|..-+..||+..
T Consensus        32 ~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         32 AARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            446778899 88999999999999987555777654

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=84.50  E-value=2.1  Score=41.75  Aligned_cols=80  Identities=20%  Similarity=0.298  Sum_probs=57.9

Q ss_pred             cEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC
Q 019500          182 RIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG  261 (340)
Q Consensus       182 ~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r  261 (340)
                      .|++|.-+|++..        .+.+.+   .+++     -+..+.|+....||+++.|+|.+++-|-..-......++++
T Consensus        60 ~Iavi~~~G~I~~--------~~~~~~---~~~~-----~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~  123 (317)
T COG0616          60 VIAVIHVEGAIVA--------GGGPLR---FIGG-----DDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALK  123 (317)
T ss_pred             EEEEEEeeeeeec--------CCCccc---cccH-----HHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHH
Confidence            6999999998752        233333   3333     35789999999999999999999987755544444444443


Q ss_pred             ---CCCCEEEEEeCCCCCC
Q 019500          262 ---TEKPIVAFIAGLTAPP  277 (340)
Q Consensus       262 ---~~KPVvvlk~Grs~~~  277 (340)
                         ..|||+++..+-...+
T Consensus       124 ~l~~~~PV~v~v~~~AASG  142 (317)
T COG0616         124 RLRAKKPVVVSVGGYAASG  142 (317)
T ss_pred             HHhhcCCEEEEECCeecch
Confidence               5559999998877763

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=84.33  E-value=9.3  Score=36.31  Aligned_cols=31  Identities=16%  Similarity=0.182  Sum_probs=26.4

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEee
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGV   73 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~V   73 (340)
                      .+|+|.|++|-+|+.+++.|.+.|++++..+
T Consensus         6 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~   36 (322)
T PLN02986          6 KLVCVTGASGYIASWIVKLLLLRGYTVKATV   36 (322)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEE
Confidence            3578889999999999999999999976444

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=84.24  E-value=4.8  Score=39.63  Aligned_cols=35  Identities=26%  Similarity=0.267  Sum_probs=28.3

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~   77 (340)
                      +.+|+|+|+ |..|..++++|...|..-+..||+..
T Consensus        24 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         24 EKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            446778899 89999999999999986555888764

>PRK06179 short chain dehydrogenase; Provisional

Probab=84.21  E-value=6.5  Score=36.16  Aligned_cols=75  Identities=13%  Similarity=0.179  Sum_probs=44.5

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCc-EEEEecChhhHHHHHHHHHHc
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKAN-ASAIYVPPPFAAAAILEAMEA  122 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vD-lavi~vp~~~v~~~v~ea~~~  122 (340)
                      .|+|.|+++.+|..+++.|.+.|++++ .+..+.  +....         . .  ++. +..+...++.+.++++++.+.
T Consensus         6 ~vlVtGasg~iG~~~a~~l~~~g~~V~-~~~r~~--~~~~~---------~-~--~~~~~~~D~~d~~~~~~~~~~~~~~   70 (270)
T PRK06179          6 VALVTGASSGIGRATAEKLARAGYRVF-GTSRNP--ARAAP---------I-P--GVELLELDVTDDASVQAAVDEVIAR   70 (270)
T ss_pred             EEEEecCCCHHHHHHHHHHHHCCCEEE-EEeCCh--hhccc---------c-C--CCeeEEeecCCHHHHHHHHHHHHHh
Confidence            478889999999999999999999966 444332  11110         0 0  111 222344566666666666543


Q ss_pred             -C-CcEEEEecCCC
Q 019500          123 -E-LDLVVCITEGI  134 (340)
Q Consensus       123 -G-vk~vvi~t~Gf  134 (340)
                       | +.. ++...|+
T Consensus        71 ~g~~d~-li~~ag~   83 (270)
T PRK06179         71 AGRIDV-LVNNAGV   83 (270)
T ss_pred             CCCCCE-EEECCCC
Confidence             2 454 4456664

>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B

Probab=84.16  E-value=4.6  Score=41.25  Aligned_cols=87  Identities=16%  Similarity=0.056  Sum_probs=59.1

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc---CCeEEEeeCCCCCC---------cee------------------cC--ccccc
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGG---------TEH------------------LG--LPVFN   89 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~---G~~vv~~VnP~~~g---------~~i------------------~G--~p~y~   89 (340)
                      .++|.|.|. |++|+.+.|.+.+.   .++++ .||-...-         +.+                  .|  ++++.
T Consensus        75 ~ikVgINGF-GRIGR~vlR~~~~~~~~~ievV-aINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~  152 (442)
T PLN02237         75 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVV-VVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVS  152 (442)
T ss_pred             eEEEEEECC-ChHHHHHHHHHHHccCCCeEEE-EECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEE
Confidence            489999999 99999999986643   56777 45531100         111                  12  22222


Q ss_pred             --CHHHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEec
Q 019500           90 --TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCIT  131 (340)
Q Consensus        90 --sl~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t  131 (340)
                        +.++++= +.++|+|+.++......+.+...++.|.+.|+ +|
T Consensus       153 ~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~-iS  196 (442)
T PLN02237        153 NRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI-IT  196 (442)
T ss_pred             cCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEE-EC
Confidence              2335542 24799999999999999999999999999855 55

>PLN02778 3,5-epimerase/4-reductase

Probab=83.61  E-value=6.7  Score=37.39  Aligned_cols=31  Identities=19%  Similarity=0.218  Sum_probs=27.0

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcCCeEE
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMV   70 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv   70 (340)
                      +...+|+|.|++|-.|+.+++.|.+.|++++
T Consensus         7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~   37 (298)
T PLN02778          7 SATLKFLIYGKTGWIGGLLGKLCQEQGIDFH   37 (298)
T ss_pred             CCCCeEEEECCCCHHHHHHHHHHHhCCCEEE
Confidence            3456799999999999999999999999865

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=83.54  E-value=5.7  Score=36.34  Aligned_cols=34  Identities=18%  Similarity=0.076  Sum_probs=26.7

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCC
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK   76 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~   76 (340)
                      ..+|+|+|+ |.+|..++++|...|..-+..+|+.
T Consensus        28 ~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         28 KAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            335677799 8899999999999998755577765

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=83.49  E-value=2.3  Score=44.96  Aligned_cols=82  Identities=20%  Similarity=0.283  Sum_probs=54.6

Q ss_pred             CCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHH
Q 019500          179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIK  258 (340)
Q Consensus       179 ~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~  258 (340)
                      .+++|++|.-+|.+...       .+.    .-.+|.+     ++.+.|+...+||++|+|+|.+.+.|-..-......+
T Consensus       306 ~~~~vavI~~~G~I~~~-------~~~----~~~~~~~-----~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~  369 (584)
T TIGR00705       306 VQDKIGIVHLEGPIADG-------RDT----EGNTGGD-----TVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRR  369 (584)
T ss_pred             CCCeEEEEEEEEEEcCC-------CCc----ccccCHH-----HHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHH
Confidence            46789999999987421       110    0012222     4678889999999999999999987654333333333


Q ss_pred             Hh---C-CCCCEEEEEeCCCCC
Q 019500          259 ES---G-TEKPIVAFIAGLTAP  276 (340)
Q Consensus       259 a~---r-~~KPVvvlk~Grs~~  276 (340)
                      ++   + .+||||+.-.|-...
T Consensus       370 ~i~~~~~~gKPVva~~~g~aaS  391 (584)
T TIGR00705       370 ELARAQARGKPVIVSMGAMAAS  391 (584)
T ss_pred             HHHHHHhCCCcEEEEECCcccc
Confidence            33   3 569999998886554

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=83.41  E-value=3.7  Score=36.64  Aligned_cols=53  Identities=9%  Similarity=0.205  Sum_probs=42.4

Q ss_pred             HHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEe---CCCCC
Q 019500          223 FVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIA---GLTAP  276 (340)
Q Consensus       223 ~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvvlk~---Grs~~  276 (340)
                      +.+.|+.+.+|+ .+.|++++.+.|-....+.+++.+++ ..||||++--   |....
T Consensus        18 l~~~l~~a~~~~-~~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~Aas   74 (187)
T cd07020          18 LERAIDQAEEGG-ADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAAS   74 (187)
T ss_pred             HHHHHHHHHhCC-CCEEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCchh
Confidence            466777777766 89999999988877888888888776 7899999886   66544

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>PRK08057 cobalt-precorrin-6x reductase; Reviewed

Probab=83.31  E-value=5.8  Score=37.38  Aligned_cols=84  Identities=17%  Similarity=0.144  Sum_probs=52.5

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCccc-------ccCHHHhhccCCCcEEEEecChh---hHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPV-------FNTVAEAKAETKANASAIYVPPP---FAA  113 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~-------y~sl~dip~~~~vDlavi~vp~~---~v~  113 (340)
                      .|.|.|. ..-|+.+++.|.+.|+++++-|--.++..+-.+.++       ...+.+...+++++++|++++|-   ...
T Consensus         4 ~IlvlgG-T~egr~la~~L~~~g~~v~~Svat~~g~~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~   82 (248)
T PRK08057          4 RILLLGG-TSEARALARALAAAGVDIVLSLAGRTGGPADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISA   82 (248)
T ss_pred             eEEEEec-hHHHHHHHHHHHhCCCeEEEEEccCCCCcccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHH
Confidence            4556675 346888999998889885543332221111122232       23566666666899999999873   345


Q ss_pred             HHHHHHHHcCCcEEE
Q 019500          114 AAILEAMEAELDLVV  128 (340)
Q Consensus       114 ~~v~ea~~~Gvk~vv  128 (340)
                      .+.+.|.+.|++.+=
T Consensus        83 ~a~~ac~~~~ipyiR   97 (248)
T PRK08057         83 NAAAACRALGIPYLR   97 (248)
T ss_pred             HHHHHHHHhCCcEEE
Confidence            577777788888753

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=83.25  E-value=1.7  Score=44.09  Aligned_cols=73  Identities=19%  Similarity=0.241  Sum_probs=48.4

Q ss_pred             ccccCc-CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCcccccCHHHhhcc-CCCcEEEEecC
Q 019500           35 PAVFVD-KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFNTVAEAKAE-TKANASAIYVP  108 (340)
Q Consensus        35 ~~lf~p-~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~---i~G~p~y~sl~dip~~-~~vDlavi~vp  108 (340)
                      .++|.. +..+|+|+|| |.||..++++|.+.|+..++.+|..... .+   -.|. -|-+++++++. .+.|+++.+|.
T Consensus       170 ~~~~~~L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~-~~~~l~el~~~l~~~DvVissTs  247 (414)
T COG0373         170 KRIFGSLKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA-EAVALEELLEALAEADVVISSTS  247 (414)
T ss_pred             HHHhcccccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC-eeecHHHHHHhhhhCCEEEEecC
Confidence            455643 5667889999 9999999999999998877799987621 11   1231 12234444322 14799888874


Q ss_pred             h
Q 019500          109 P  109 (340)
Q Consensus       109 ~  109 (340)
                      +
T Consensus       248 a  248 (414)
T COG0373         248 A  248 (414)
T ss_pred             C
Confidence            4

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=83.23  E-value=5  Score=37.51  Aligned_cols=35  Identities=17%  Similarity=0.191  Sum_probs=28.3

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~   77 (340)
                      ..+|+|+|+ |..|..++++|...|..-+..+|+..
T Consensus        24 ~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        24 ASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            346778899 88999999999999987555787765

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK14852 hypothetical protein; Provisional

Probab=83.08  E-value=4.5  Score=45.18  Aligned_cols=117  Identities=15%  Similarity=0.086  Sum_probs=58.0

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce-----e------cCcccccCHHHhhccCCCcEEEEecChh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-----H------LGLPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~-----i------~G~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      ..+|+|+|+ |..|+.++.+|...|..-+..+|...-...     +      .|.+--..+++...+.++++=|.+.+..
T Consensus       332 ~srVlVvGl-GGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~~  410 (989)
T PRK14852        332 RSRVAIAGL-GGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEG  410 (989)
T ss_pred             cCcEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEecC
Confidence            445777799 779999999999988764445554331110     0      1211111122222222345555555444


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCC
Q 019500          111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG  161 (340)
Q Consensus       111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~G  161 (340)
                      ...+.+++.+ .++..+|-.+..|+.+....+.+.| +++|+.++--.+.|
T Consensus       411 I~~en~~~fl-~~~DiVVDa~D~~~~~~rr~l~~~c-~~~~IP~I~ag~~G  459 (989)
T PRK14852        411 VAAETIDAFL-KDVDLLVDGIDFFALDIRRRLFNRA-LELGIPVITAGPLG  459 (989)
T ss_pred             CCHHHHHHHh-hCCCEEEECCCCccHHHHHHHHHHH-HHcCCCEEEeeccc
Confidence            4445555544 3566555433444322223333443 56666666544443

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=82.88  E-value=3.2  Score=41.80  Aligned_cols=79  Identities=16%  Similarity=0.285  Sum_probs=49.4

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc------ee--cCcccc-cCH-HHhhccCCCcEEEEecChhhHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT------EH--LGLPVF-NTV-AEAKAETKANASAIYVPPPFAA  113 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~------~i--~G~p~y-~sl-~dip~~~~vDlavi~vp~~~v~  113 (340)
                      +|+|+|+ |+.|...++.|.+.|+++. .++++....      ++  .|+.++ .+. ++...  ++|++|.++.....-
T Consensus         7 ~v~iiG~-g~~G~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~d~vv~~~g~~~~~   82 (450)
T PRK14106          7 KVLVVGA-GVSGLALAKFLKKLGAKVI-LTDEKEEDQLKEALEELGELGIELVLGEYPEEFLE--GVDLVVVSPGVPLDS   82 (450)
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhh--cCCEEEECCCCCCCC
Confidence            4667798 6699999999999999865 677653100      01  144432 222 23333  589999877644445


Q ss_pred             HHHHHHHHcCCcE
Q 019500          114 AAILEAMEAELDL  126 (340)
Q Consensus       114 ~~v~ea~~~Gvk~  126 (340)
                      +.+..|.++|++.
T Consensus        83 ~~~~~a~~~~i~~   95 (450)
T PRK14106         83 PPVVQAHKKGIEV   95 (450)
T ss_pred             HHHHHHHHCCCcE
Confidence            5677777777643

>PLN02206 UDP-glucuronate decarboxylase

Probab=82.87  E-value=4.2  Score=41.40  Aligned_cols=35  Identities=20%  Similarity=0.305  Sum_probs=30.4

Q ss_pred             cCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEe
Q 019500           38 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG   72 (340)
Q Consensus        38 f~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~   72 (340)
                      +.++..+|+|.|++|-.|+.+++.|++.|++++..
T Consensus       115 ~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~l  149 (442)
T PLN02206        115 LKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVV  149 (442)
T ss_pred             cccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEE
Confidence            45577889999999999999999999999997744

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=82.81  E-value=12  Score=36.50  Aligned_cols=85  Identities=9%  Similarity=0.001  Sum_probs=49.9

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCC-eEEEeeC--CCCC-Cc--------eecC----cccccCHHHhhccCCCcEEEEe
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGT-KMVGGVT--PKKG-GT--------EHLG----LPVFNTVAEAKAETKANASAIY  106 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~-~vv~~Vn--P~~~-g~--------~i~G----~p~y~sl~dip~~~~vDlavi~  106 (340)
                      .+|+|+|+ |.+|..++..+...|. + +..+|  |... ++        ...+    +....+.+++.   +.|++|++
T Consensus         7 ~KI~IIGa-G~vG~~ia~~la~~gl~~-i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~---~aDiVI~t   81 (321)
T PTZ00082          7 RKISLIGS-GNIGGVMAYLIVLKNLGD-VVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIA---GSDVVIVT   81 (321)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhC---CCCEEEEC
Confidence            46777898 9999988877777775 5 33544  4421 11        1112    22234676664   48999986


Q ss_pred             c---------------------ChhhHHHHHHHHHHcCCcEEEEecC
Q 019500          107 V---------------------PPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       107 v---------------------p~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      .                     ..+...+++++..+.+-++.++..+
T Consensus        82 ag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~s  128 (321)
T PTZ00082         82 AGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVIT  128 (321)
T ss_pred             CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            5                     1223556666777777665444443

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=82.54  E-value=4.4  Score=39.08  Aligned_cols=30  Identities=20%  Similarity=0.397  Sum_probs=25.1

Q ss_pred             EEEEeCCCCCcchHHHHHHHHc-CCeEEEeeC
Q 019500           44 RVICQGITGKNGTFHTEQAIEY-GTKMVGGVT   74 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~-G~~vv~~Vn   74 (340)
                      +|+|.|++|-.|+.+++.|++. |++++ +++
T Consensus         3 ~ilVtGatGfiGs~l~~~L~~~~~~~V~-~~~   33 (347)
T PRK11908          3 KVLILGVNGFIGHHLSKRILETTDWEVY-GMD   33 (347)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCCeEE-EEe
Confidence            5889999999999999999876 68877 444

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=82.53  E-value=4.6  Score=36.77  Aligned_cols=31  Identities=26%  Similarity=0.332  Sum_probs=26.0

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCC
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTP   75 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP   75 (340)
                      +|+|.|+++..|..+++.+.+.|++++ .++.
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~~V~-~~~r   32 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGHKVI-ATGR   32 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEE-EEEC
Confidence            477889999999999999999999866 4443

>PRK10949 protease 4; Provisional

Probab=82.52  E-value=2.8  Score=44.62  Aligned_cols=82  Identities=20%  Similarity=0.323  Sum_probs=55.2

Q ss_pred             CCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHH
Q 019500          179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIK  258 (340)
Q Consensus       179 ~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~  258 (340)
                      ..+.||+|.-+|.+...         -+...  .+|.     -++.+.|+-..+||++|+|+|.+.+.|-.........+
T Consensus       324 ~~~~Iavi~~~G~I~~g---------~~~~g--~~~~-----~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~  387 (618)
T PRK10949        324 TGGSIAVIFANGAIMDG---------EETPG--NVGG-----DTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRA  387 (618)
T ss_pred             CCCeEEEEEEEEEEcCC---------CCcCC--CcCH-----HHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHH
Confidence            35789999999988421         11000  1222     24678899999999999999999988765444444434


Q ss_pred             Hh---C-CCCCEEEEEeCCCCC
Q 019500          259 ES---G-TEKPIVAFIAGLTAP  276 (340)
Q Consensus       259 a~---r-~~KPVvvlk~Grs~~  276 (340)
                      ++   | .+||||+.-.+-.+.
T Consensus       388 ~i~~~r~~gKPVvas~~~~aAS  409 (618)
T PRK10949        388 ELAAARAAGKPVVVSMGGMAAS  409 (618)
T ss_pred             HHHHHHhcCCcEEEEECCCCcc
Confidence            33   3 679999997665444

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=82.18  E-value=8  Score=36.23  Aligned_cols=86  Identities=13%  Similarity=0.084  Sum_probs=48.8

Q ss_pred             EEEeCCCCCcchHHHHHHHHcCC-eEEEeeCCCCCCce--------ecC-cccccCHHHhhcc--CCCcEEEEecCh---
Q 019500           45 VICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGGTE--------HLG-LPVFNTVAEAKAE--TKANASAIYVPP---  109 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~G~-~vv~~VnP~~~g~~--------i~G-~p~y~sl~dip~~--~~vDlavi~vp~---  109 (340)
                      |+|.|++|-+|+.+++.|.+.|+ +++ .++.......        +.+ +.....++.+.+.  .++|+++-+...   
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~~v~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~A~~~~~   79 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGITDIL-VVDNLRDGHKFLNLADLVIADYIDKEDFLDRLEKGAFGKIEAIFHQGACSDT   79 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCceEE-EEecCCCchhhhhhhheeeeccCcchhHHHHHHhhccCCCCEEEECccccCc
Confidence            46779999999999999999997 454 5543221111        111 1111123333320  258988866521   


Q ss_pred             -------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          110 -------------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       110 -------------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                                   .....+++.|.+.+++ +|.+++
T Consensus        80 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS  114 (314)
T TIGR02197        80 TETDGEYMMENNYQYSKRLLDWCAEKGIP-FIYASS  114 (314)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHhCCc-EEEEcc
Confidence                         1234467778788876 444554

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain

Probab=82.16  E-value=9  Score=31.68  Aligned_cols=92  Identities=12%  Similarity=0.089  Sum_probs=50.6

Q ss_pred             cchHHHH-HHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh----hhHHHHHHHHHHcCCcEEE
Q 019500           54 NGTFHTE-QAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP----PFAAAAILEAMEAELDLVV  128 (340)
Q Consensus        54 ~G~~v~~-~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~----~~v~~~v~ea~~~Gvk~vv  128 (340)
                      .|..... .+...||++++. .+.        +|.-.-++.+.+ .++|++.++...    +.+.+.++.+.+.|.+.+.
T Consensus        14 lG~~~~~~~l~~~G~~vi~l-G~~--------vp~e~~~~~a~~-~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~   83 (122)
T cd02071          14 RGAKVIARALRDAGFEVIYT-GLR--------QTPEEIVEAAIQ-EDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDIL   83 (122)
T ss_pred             HHHHHHHHHHHHCCCEEEEC-CCC--------CCHHHHHHHHHH-cCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCE
Confidence            4544444 455579997732 111        222222334333 479999999744    4445556666677664444


Q ss_pred             EecCCCChh-hHHHHHHHHhccCCc-EEEccCCC
Q 019500          129 CITEGIPQH-DMVRVKAALNNQSKT-RLVGPNCP  160 (340)
Q Consensus       129 i~t~Gf~e~-~~~~l~~~aar~~gi-rviGPNc~  160 (340)
                      ++..|-... +.+++     ++.|+ .+++|+|-
T Consensus        84 i~~GG~~~~~~~~~~-----~~~G~d~~~~~~~~  112 (122)
T cd02071          84 VVGGGIIPPEDYELL-----KEMGVAEIFGPGTS  112 (122)
T ss_pred             EEEECCCCHHHHHHH-----HHCCCCEEECCCCC
Confidence            455553322 23322     46787 58888864

This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=82.06  E-value=8.5  Score=39.18  Aligned_cols=118  Identities=16%  Similarity=0.129  Sum_probs=62.7

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccC-----------HHHhhccCCCcEEEEecCh-
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT-----------VAEAKAETKANASAIYVPP-  109 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~s-----------l~dip~~~~vDlavi~vp~-  109 (340)
                      +.+|+|+|+ |..|..+++||.-.|..-+..||+..-..+-.|.-.+-+           +.+...+.++|+-+.+... 
T Consensus        20 ~s~VlliG~-gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~e~   98 (425)
T cd01493          20 SAHVCLLNA-TATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVEES   98 (425)
T ss_pred             hCeEEEEcC-cHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            446788899 569999999999999875668887642111122111111           1111222245665544432 


Q ss_pred             -hhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCccc
Q 019500          110 -PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK  164 (340)
Q Consensus       110 -~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~  164 (340)
                       +...+...+.. .+... || .+..+......+.+.+ +++++.++=.+|.|++-
T Consensus        99 ~~~ll~~~~~f~-~~fdi-VI-~t~~~~~~~~~L~~~c-~~~~iPlI~~~s~G~~G  150 (425)
T cd01493          99 PEALLDNDPSFF-SQFTV-VI-ATNLPESTLLRLADVL-WSANIPLLYVRSYGLYG  150 (425)
T ss_pred             cchhhhhHHHHh-cCCCE-EE-ECCCCHHHHHHHHHHH-HHcCCCEEEEecccCEE
Confidence             21111111221 23343 32 3444444445565665 67788888777777653

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=82.04  E-value=4.1  Score=42.56  Aligned_cols=66  Identities=18%  Similarity=0.295  Sum_probs=43.3

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee-----cCcccc-cC------HHHhhccCCCcEEEEecChhh
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-----LGLPVF-NT------VAEAKAETKANASAIYVPPPF  111 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i-----~G~p~y-~s------l~dip~~~~vDlavi~vp~~~  111 (340)
                      .++|+|+ |+.|+.+++.|.+.|.+++ .|+++.  +.+     .|.+++ .+      +++..- ++.|.++++++.+.
T Consensus       419 hiiI~G~-G~~G~~la~~L~~~g~~vv-vId~d~--~~~~~~~~~g~~~i~GD~~~~~~L~~a~i-~~a~~viv~~~~~~  493 (558)
T PRK10669        419 HALLVGY-GRVGSLLGEKLLAAGIPLV-VIETSR--TRVDELRERGIRAVLGNAANEEIMQLAHL-DCARWLLLTIPNGY  493 (558)
T ss_pred             CEEEECC-ChHHHHHHHHHHHCCCCEE-EEECCH--HHHHHHHHCCCeEEEcCCCCHHHHHhcCc-cccCEEEEEcCChH
Confidence            4677799 9999999999999998866 676654  211     244332 22      333322 26898998988765


Q ss_pred             HHH
Q 019500          112 AAA  114 (340)
Q Consensus       112 v~~  114 (340)
                      ...
T Consensus       494 ~~~  496 (558)
T PRK10669        494 EAG  496 (558)
T ss_pred             HHH
Confidence            443

>PRK14030 glutamate dehydrogenase; Provisional

Probab=82.03  E-value=11  Score=38.71  Aligned_cols=112  Identities=14%  Similarity=0.097  Sum_probs=62.6

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEe-------eCCCCCC-cee---c------C-c-----ccccC-----H
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-------VTPKKGG-TEH---L------G-L-----PVFNT-----V   91 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~-------VnP~~~g-~~i---~------G-~-----p~y~s-----l   91 (340)
                      .+..+|+|+|. |+.|+..++.|.+.|.++++.       .||+.-- +.+   .      | +     .-|+.     -
T Consensus       226 l~g~~vaIQGf-GnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~~  304 (445)
T PRK14030        226 IKGKTVAISGF-GNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFAG  304 (445)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcCC
Confidence            45678999998 999999999999999998853       4554310 010   0      0 0     01111     1


Q ss_pred             HHhhccCCCcEEEEec-ChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccC
Q 019500           92 AEAKAETKANASAIYV-PPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN  158 (340)
Q Consensus        92 ~dip~~~~vDlavi~v-p~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPN  158 (340)
                      +++.+ .++|+.+-|- ......+.++...+.+++.|+=.+-|....+..++   + ++.|+.++ |.
T Consensus       305 ~~~~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~i---L-~~rGI~~v-PD  366 (445)
T PRK14030        305 KKPWE-QKVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDK---F-IAAKQLFA-PG  366 (445)
T ss_pred             cccee-ccccEEeeccccccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH---H-HHCCCEEe-Cc
Confidence            22222 2466666543 23444556666666788876644445322233322   2 46677665 54

>PLN02650 dihydroflavonol-4-reductase

Probab=82.00  E-value=10  Score=36.55  Aligned_cols=31  Identities=19%  Similarity=0.293  Sum_probs=26.5

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEe
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG   72 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~   72 (340)
                      +-+|+|.|++|-+|+.+++.|.+.|++++..
T Consensus         5 ~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~   35 (351)
T PLN02650          5 KETVCVTGASGFIGSWLVMRLLERGYTVRAT   35 (351)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHHCCCEEEEE
Confidence            3468899999999999999999999997643

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=81.95  E-value=7.8  Score=34.26  Aligned_cols=33  Identities=18%  Similarity=0.033  Sum_probs=26.0

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~   77 (340)
                      +|+|+|+ |.+|..++++|...|+.-+..+|+..
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            3677899 88999999999999986444666653

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=81.81  E-value=3.7  Score=42.00  Aligned_cols=86  Identities=17%  Similarity=0.193  Sum_probs=52.6

Q ss_pred             cccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-c---eecCcccccC---HHHhhccCCCcEEEEe
Q 019500           34 APAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T---EHLGLPVFNT---VAEAKAETKANASAIY  106 (340)
Q Consensus        34 l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~---~i~G~p~y~s---l~dip~~~~vDlavi~  106 (340)
                      |..+..-...+|.|+|+ |+.|..+++.|.+.|+++. ..|.+... .   +-.|++++..   .+.++   ++|++|..
T Consensus         7 ~~~~~~~~~~~v~v~G~-G~sG~a~a~~L~~~G~~V~-~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~---~~d~vV~S   81 (473)
T PRK00141          7 LSALPQELSGRVLVAGA-GVSGRGIAAMLSELGCDVV-VADDNETARHKLIEVTGVADISTAEASDQLD---SFSLVVTS   81 (473)
T ss_pred             hhhcccccCCeEEEEcc-CHHHHHHHHHHHHCCCEEE-EECCChHHHHHHHHhcCcEEEeCCCchhHhc---CCCEEEeC
Confidence            55554434446788898 9999999999999999754 56643210 1   1237776542   23343   37887764


Q ss_pred             --cChhhHHHHHHHHHHcCCcE
Q 019500          107 --VPPPFAAAAILEAMEAELDL  126 (340)
Q Consensus       107 --vp~~~v~~~v~ea~~~Gvk~  126 (340)
                        +|++.  +.+.+|.++|++.
T Consensus        82 pgi~~~~--p~~~~a~~~gi~v  101 (473)
T PRK00141         82 PGWRPDS--PLLVDAQSQGLEV  101 (473)
T ss_pred             CCCCCCC--HHHHHHHHCCCce
Confidence              24333  4566777777754

>PRK09291 short chain dehydrogenase; Provisional

Probab=81.64  E-value=12  Score=34.01  Aligned_cols=29  Identities=14%  Similarity=0.237  Sum_probs=25.2

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEe
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGG   72 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~   72 (340)
                      .|+|.|+++.+|+.+++.|.+.|++++..
T Consensus         4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~   32 (257)
T PRK09291          4 TILITGAGSGFGREVALRLARKGHNVIAG   32 (257)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence            47788999999999999999999987743

>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=81.27  E-value=6.3  Score=39.01  Aligned_cols=30  Identities=20%  Similarity=0.138  Sum_probs=24.0

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeC
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVT   74 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~Vn   74 (340)
                      ++|.|.|. |++|+.+.|.+.+. +++++ .||
T Consensus         3 ~kv~INGf-GRIGR~v~R~~~~~~~~~iv-aiN   33 (342)
T PTZ00353          3 ITVGINGF-GPVGKAVLFASLTDPLVTVV-AVN   33 (342)
T ss_pred             eEEEEECC-ChHHHHHHHHHHhcCCcEEE-Eec
Confidence            68899999 99999999987654 57777 454

>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]

Probab=81.14  E-value=9.3  Score=37.13  Aligned_cols=129  Identities=13%  Similarity=0.097  Sum_probs=85.4

Q ss_pred             CCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE--EEccCCCCcccCC--CcccccCC
Q 019500           99 KANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR--LVGPNCPGVIKPG--ECKIGIMP  174 (340)
Q Consensus        99 ~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir--viGPNc~Gi~~p~--~~~~~~~~  174 (340)
                      +-|+++--.....+.+++..|.+.|.+.-|+.+...+..+...+.+.+ +++|++  +|=...+|.+.-.  .+-+|.  
T Consensus       119 dg~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L-~~~gI~~~~I~Dsa~~~~~~~vd~VivGa--  195 (301)
T COG1184         119 DGDVILTHSFSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKEL-RQSGIPVTVIVDSAVGAFMSRVDKVLVGA--  195 (301)
T ss_pred             CCCEEEEecCcHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHH-HHcCCceEEEechHHHHHHHhCCEEEECc--
Confidence            467777777889999999999999998778889999987777776666 678865  5655667765432  222332  


Q ss_pred             CCCCCCCcEEEEecChHHHHHHHHHHHhCCCCceEEe---------ecCCCCCCCCCHHHHHHHhhcCCCc
Q 019500          175 GYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCV---------GIGGDPFNGTNFVDCVTKFIADPQT  236 (340)
Q Consensus       175 ~~~~~~G~valvSQSG~l~~~~~~~~~~~giG~S~~v---------s~Gn~a~~dv~~~d~l~~l~~Dp~T  236 (340)
                      .....-|  ++++++|+...++.  |++.+..|--+.         -.|+..  -..+.|..+...++|..
T Consensus       196 d~I~~nG--~lvnkiGT~~lA~~--A~e~~~Pf~v~aesyKf~p~~~~~~~~--~~~~~~~~e~~~~~~~~  260 (301)
T COG1184         196 DAILANG--ALVNKIGTSPLALA--ARELRVPFYVVAESYKFVPKTLLDTLV--EIELRDPLEVAREEPLG  260 (301)
T ss_pred             cceecCC--cEEeccchHHHHHH--HHHhCCCEEEEeeeecccccccCCCcc--eeeccChhhccccCccc
Confidence            1123445  99999999987765  566777764322         234443  34445555555444444

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=81.12  E-value=9.9  Score=36.61  Aligned_cols=31  Identities=19%  Similarity=0.164  Sum_probs=25.7

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeC
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT   74 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~Vn   74 (340)
                      +|+|.|++|-+|+.+++.|.+.|++++..++
T Consensus         3 ~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~   33 (355)
T PRK10217          3 KILITGGAGFIGSALVRYIINETSDAVVVVD   33 (355)
T ss_pred             EEEEEcCCcHHHHHHHHHHHHcCCCEEEEEe
Confidence            5788999999999999999999987543444

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=81.08  E-value=5.2  Score=38.88  Aligned_cols=59  Identities=12%  Similarity=0.063  Sum_probs=45.5

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA  114 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~  114 (340)
                      .-.|+|+|.|+.+|+-++.+|.+.|+++. ..|.+.  .         +++++..  ..|+++.+++.....+
T Consensus       159 Gk~V~vIG~s~ivG~PmA~~L~~~gatVt-v~~~~t--~---------~l~e~~~--~ADIVIsavg~~~~v~  217 (301)
T PRK14194        159 GKHAVVIGRSNIVGKPMAALLLQAHCSVT-VVHSRS--T---------DAKALCR--QADIVVAAVGRPRLID  217 (301)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHCCCEEE-EECCCC--C---------CHHHHHh--cCCEEEEecCChhccc
Confidence            34566779999999999999999999865 666553  1         6888776  4899999998765433

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=81.06  E-value=3.9  Score=36.24  Aligned_cols=57  Identities=16%  Similarity=0.158  Sum_probs=41.6

Q ss_pred             CCeEEEEeCCCCCc-chHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhH
Q 019500           41 KNTRVICQGITGKN-GTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFA  112 (340)
Q Consensus        41 ~~iaViVvGasgk~-G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v  112 (340)
                      +.-+|+|+|+ |.+ |..++++|.+.|.+ +..+|.+.           +++.+...  +.|++|.+++...+
T Consensus        43 ~gk~vlViG~-G~~~G~~~a~~L~~~g~~-V~v~~r~~-----------~~l~~~l~--~aDiVIsat~~~~i  100 (168)
T cd01080          43 AGKKVVVVGR-SNIVGKPLAALLLNRNAT-VTVCHSKT-----------KNLKEHTK--QADIVIVAVGKPGL  100 (168)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhhCCCE-EEEEECCc-----------hhHHHHHh--hCCEEEEcCCCCce
Confidence            3456788899 765 88899999999987 44777542           34555544  48999999988653

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=81.01  E-value=4.9  Score=39.95  Aligned_cols=35  Identities=23%  Similarity=0.213  Sum_probs=28.2

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCC
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK   76 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~   76 (340)
                      +..+|+|+|+ |..|..++++|...|..-+..||+.
T Consensus       134 ~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            3456778899 8899999999999998755578776

>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm)

Probab=81.01  E-value=8.8  Score=32.63  Aligned_cols=95  Identities=19%  Similarity=0.143  Sum_probs=54.9

Q ss_pred             CcchHHHH-HHHHcCCeEEEe-eCCCCCCceecCcccccCHHHhhccCCCcEEEEec----ChhhHHHHHHHHHHcCCcE
Q 019500           53 KNGTFHTE-QAIEYGTKMVGG-VTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYV----PPPFAAAAILEAMEAELDL  126 (340)
Q Consensus        53 k~G~~v~~-~l~~~G~~vv~~-VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~v----p~~~v~~~v~ea~~~Gvk~  126 (340)
                      ..|..++. .|.+.||++++. ++-..  +++        ++.+.+ +++|++-+..    .-....++++.+.++|.+.
T Consensus        13 diGkniv~~~L~~~GfeVidLG~~v~~--e~~--------v~aa~~-~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~   81 (128)
T cd02072          13 AVGNKILDHAFTEAGFNVVNLGVLSPQ--EEF--------IDAAIE-TDADAILVSSLYGHGEIDCKGLREKCDEAGLKD   81 (128)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCCCCCH--HHH--------HHHHHH-cCCCEEEEeccccCCHHHHHHHHHHHHHCCCCC
Confidence            35655555 455579997742 32111  111        334443 4799987754    3355677888888888744


Q ss_pred             EEEecCCC---ChhhHHHHHHHHhccCCc-EEEccCC
Q 019500          127 VVCITEGI---PQHDMVRVKAALNNQSKT-RLVGPNC  159 (340)
Q Consensus       127 vvi~t~Gf---~e~~~~~l~~~aar~~gi-rviGPNc  159 (340)
                      +.++-.|.   ++++..+-++.+ ++.|+ ++.||.+
T Consensus        82 v~vivGG~~~i~~~d~~~~~~~L-~~~Gv~~vf~pgt  117 (128)
T cd02072          82 ILLYVGGNLVVGKQDFEDVEKRF-KEMGFDRVFAPGT  117 (128)
T ss_pred             CeEEEECCCCCChhhhHHHHHHH-HHcCCCEEECcCC
Confidence            54555553   555544333333 67887 4888874

Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=80.96  E-value=7.1  Score=39.12  Aligned_cols=36  Identities=28%  Similarity=0.242  Sum_probs=28.9

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~   77 (340)
                      +..+|+|+|+ |..|..++++|...|+.-+..||+..
T Consensus        41 ~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~   76 (392)
T PRK07878         41 KNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDV   76 (392)
T ss_pred             hcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCE
Confidence            3456788899 88999999999999987555777654

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=80.82  E-value=5.6  Score=35.53  Aligned_cols=52  Identities=12%  Similarity=0.192  Sum_probs=41.9

Q ss_pred             HHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCCCC
Q 019500          224 VDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIAGLTAP  276 (340)
Q Consensus       224 ~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvvlk~Grs~~  276 (340)
                      .+.|+...+++ .+.|++++.+.|-......+..+.++ ..|||+++-.|....
T Consensus        19 ~~~l~~a~~~~-~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~AaS   71 (178)
T cd07021          19 ERALKEAKEEG-ADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAAS   71 (178)
T ss_pred             HHHHHHHHhCC-CCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCchHH
Confidence            34455556666 89999999998888888898888876 789999999887654

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>PLN02306 hydroxypyruvate reductase

Probab=80.76  E-value=3.6  Score=41.31  Aligned_cols=63  Identities=13%  Similarity=0.130  Sum_probs=43.7

Q ss_pred             eEEEEeCCCCCcchHHHHHHH-HcCCeEEEeeCCCCCCc-e----ecC------------cccccCHHHhhccCCCcEEE
Q 019500           43 TRVICQGITGKNGTFHTEQAI-EYGTKMVGGVTPKKGGT-E----HLG------------LPVFNTVAEAKAETKANASA  104 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~-~~G~~vv~~VnP~~~g~-~----i~G------------~p~y~sl~dip~~~~vDlav  104 (340)
                      -.|.|+|. |++|+.+++.+. .+|.+++ ..||....+ .    ..|            +..+.+++++..  ..|+++
T Consensus       166 ktvGIiG~-G~IG~~vA~~l~~~fGm~V~-~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~--~sDiV~  241 (386)
T PLN02306        166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLR--EADVIS  241 (386)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCEEE-EECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHh--hCCEEE
Confidence            34667799 999999999985 7899876 667653100 0    111            122458999987  489999


Q ss_pred             EecCh
Q 019500          105 IYVPP  109 (340)
Q Consensus       105 i~vp~  109 (340)
                      +.+|-
T Consensus       242 lh~Pl  246 (386)
T PLN02306        242 LHPVL  246 (386)
T ss_pred             EeCCC
Confidence            99884

>PLN02427 UDP-apiose/xylose synthase

Probab=80.32  E-value=9.1  Score=37.58  Aligned_cols=31  Identities=16%  Similarity=0.131  Sum_probs=25.6

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEe
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGG   72 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~   72 (340)
                      ..+|+|.|++|-+|+.+++.|.+. |++++..
T Consensus        14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l   45 (386)
T PLN02427         14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLAL   45 (386)
T ss_pred             CcEEEEECCcchHHHHHHHHHHhcCCCEEEEE
Confidence            346889999999999999999987 5876643

>PRK06223 malate dehydrogenase; Reviewed

Probab=80.06  E-value=19  Score=34.43  Aligned_cols=84  Identities=12%  Similarity=0.065  Sum_probs=48.6

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCC-eEEEeeC--CCCC-Cce--e------cC--ccc--ccCHHHhhccCCCcEEEEe
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGT-KMVGGVT--PKKG-GTE--H------LG--LPV--FNTVAEAKAETKANASAIY  106 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~-~vv~~Vn--P~~~-g~~--i------~G--~p~--y~sl~dip~~~~vDlavi~  106 (340)
                      .+|+|+|+ |.+|..++..+...|. +++ .+|  +... |..  +      .+  .++  ..+.+++.   +.|++|++
T Consensus         3 ~KI~VIGa-G~vG~~ia~~la~~~~~ev~-L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~---~aDiVii~   77 (307)
T PRK06223          3 KKISIIGA-GNVGATLAHLLALKELGDVV-LFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIA---GSDVVVIT   77 (307)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEE-EEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHC---CCCEEEEC
Confidence            47788899 9999998888877664 533 444  4321 110  0      01  111  23455554   48999988


Q ss_pred             cC--h--------------hhHHHHHHHHHHcCCcEEEEec
Q 019500          107 VP--P--------------PFAAAAILEAMEAELDLVVCIT  131 (340)
Q Consensus       107 vp--~--------------~~v~~~v~ea~~~Gvk~vvi~t  131 (340)
                      ..  .              +...+++++..+.+-+.++++.
T Consensus        78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~  118 (307)
T PRK06223         78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVV  118 (307)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence            52  2              3455666666666666533333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	340
2fpg_A	305	Crystal Structure Of Pig Gtp-Specific Succinyl-Coa		3e-92
1euc_A	311	Crystal Structure Of Dephosphorylated Pig Heart, Gt		4e-92
1jkj_A	288	E. Coli Scs Length = 288		4e-91
1cqi_A	286	Crystal Structure Of The Complex Of Adp And Mg2+ Wi		2e-90
2fp4_A	305	Crystal Structure Of Pig Gtp-Specific Succinyl-Coa		2e-90
1eud_A	311	Crystal Structure Of Phosphorylated Pig Heart, Gtp-		2e-90
2nu7_A	288	C123as Mutant Of E. Coli Succinyl-Coa Synthetase Le		4e-90
2nua_A	288	C123av Mutant Of E. Coli Succinyl-Coa Synthetase Le		4e-90
2nu8_A	288	C123at Mutant Of E. Coli Succinyl-Coa Synthetase Le		5e-90
2scu_A	288	A Detailed Description Of The Structure Of Succinyl		1e-84
2nu6_A	288	C123aa Mutant Of E. Coli Succinyl-Coa Synthetase Le		9e-84
2nu9_A	288	C123at Mutant Of E. Coli Succinyl-Coa Synthetase Or		1e-83
2yv2_A	297	Crystal Structure Of Succinyl-Coa Synthetase Alpha		2e-68
2yv1_A	294	Crystal Structure Of Succinyl-Coa Synthetase Alpha		2e-58
3ufx_A	296	Thermus Aquaticus Succinyl-coa Synthetase In Comple		2e-57
1oi7_A	288	The Crystal Structure Of Succinyl-Coa Synthetase Al		5e-57
3mwe_B	335	Truncated Human Atp-Citrate Lyase With Tartrate Bou		6e-11
3pff_A	829	Truncated Human Atp-Citrate Lyase With Adp And Tart		1e-10
3mwd_B	334	Truncated Human Atp-Citrate Lyase With Citrate Boun		3e-10

>pdb|2FPG|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa Synthetase In Complex With Gdp Length = 305

Iteration: 1
 Score =  334 bits (857), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 186/305 (60%), Positives = 217/305 (71%), Gaps = 12/305 (3%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           ++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG  HLGLPVFNTV EAK 
Sbjct: 9   LYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKE 68
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
           +T A AS IYVPPPF               VVCITEGIPQ DMVRVK  L  Q KTRL+G
Sbjct: 69  QTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIG 128
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PNCPGVI PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS CVGIGGD
Sbjct: 129 PNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGD 188
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGT---EKPIVAFIAGL 273
           PFNGT+F DC+  F+ DP T               +AA  +K+  +    KP+V+FIAGL
Sbjct: 189 PFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGL 248
Query: 274 TAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 333
           TAPPGRRMGHA          AI++GGKG A++KI  L+ AGV V  SPA++G  + + F
Sbjct: 249 TAPPGRRMGHA---------GAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEF 299
Query: 334 KQRGL 338
           ++R +
Sbjct: 300 EKRKM 304

>pdb|1EUC|A Chain A, Crystal Structure Of Dephosphorylated Pig Heart, Gtp- Specific Succinyl-Coa Synthetase Length = 311

Iteration: 1
 Score =  334 bits (857), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 186/305 (60%), Positives = 217/305 (71%), Gaps = 12/305 (3%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           ++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG  HLGLPVFNTV EAK 
Sbjct: 15  LYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKE 74
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
           +T A AS IYVPPPF               VVCITEGIPQ DMVRVK  L  Q KTRL+G
Sbjct: 75  QTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIG 134
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PNCPGVI PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS CVGIGGD
Sbjct: 135 PNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGD 194
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGT---EKPIVAFIAGL 273
           PFNGT+F DC+  F+ DP T               +AA  +K+  +    KP+V+FIAGL
Sbjct: 195 PFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGL 254
Query: 274 TAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 333
           TAPPGRRMGHA          AI++GGKG A++KI  L+ AGV V  SPA++G  + + F
Sbjct: 255 TAPPGRRMGHA---------GAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEF 305
Query: 334 KQRGL 338
           ++R +
Sbjct: 306 EKRKM 310

>pdb|1JKJ|A Chain A, E. Coli Scs Length = 288

Iteration: 1
 Score =  331 bits (848), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 175/298 (58%), Positives = 202/298 (67%), Gaps = 11/298 (3%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 2   ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 61
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
            T A AS IYVP PF               ++ ITEGIP  DM+ VK  L+ ++  R++G
Sbjct: 62  ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PNCPGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT  G GQSTCVGIGGD
Sbjct: 121 PNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
           P  G+NF+D +  F  DPQT               +AAA IKE  T KP+V +IAG+TAP
Sbjct: 181 PIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAP 239
Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 334
            G+RMGHAG         AI++GGKGTA +K   L  AGV  V S A IG A+  V K
Sbjct: 240 KGKRMGHAG---------AIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288

>pdb|1CQI|A Chain A, Crystal Structure Of The Complex Of Adp And Mg2+ With Dephosphorylated E. Coli Succinyl-Coa Synthetase Length = 286

Iteration: 1
 Score =  328 bits (841), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 174/296 (58%), Positives = 201/296 (67%), Gaps = 11/296 (3%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 2   ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 61
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
            T A AS IYVP PF               ++ ITEGIP  DM+ VK  L+ ++  R++G
Sbjct: 62  ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PNCPGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT  G GQSTCVGIGGD
Sbjct: 121 PNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
           P  G+NF+D +  F  DPQT               +AAA IKE  T KP+V +IAG+TAP
Sbjct: 181 PIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAP 239
Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEV 332
            G+RMGHAG         AI++GGKGTA +K   L  AGV  V S A IG A+  V
Sbjct: 240 KGKRMGHAG---------AIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTV 286

>pdb|2FP4|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa Synthetase In Complex With Gtp Length = 305

Iteration: 1
 Score =  328 bits (841), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 185/305 (60%), Positives = 216/305 (70%), Gaps = 12/305 (3%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           ++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG  HLGLPVFNTV EAK 
Sbjct: 9   LYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKE 68
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
           +T A AS IYVPPPF               VVCITEGIPQ DMVRVK  L  Q KTRL+G
Sbjct: 69  QTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIG 128
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PNCPGVI PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS CVGIGGD
Sbjct: 129 PNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGD 188
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGT---EKPIVAFIAGL 273
           PFNGT+F DC+  F+ DP T               +AA  +K+  +    KP+V+FIAGL
Sbjct: 189 PFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGL 248
Query: 274 TAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 333
           TAPPGRRMG A          AI++GGKG A++KI  L+ AGV V  SPA++G  + + F
Sbjct: 249 TAPPGRRMGXA---------GAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEF 299
Query: 334 KQRGL 338
           ++R +
Sbjct: 300 EKRKM 304

>pdb|1EUD|A Chain A, Crystal Structure Of Phosphorylated Pig Heart, Gtp-Specific Succinyl-Coa Synthetase Length = 311

Iteration: 1
 Score =  328 bits (841), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 185/305 (60%), Positives = 216/305 (70%), Gaps = 12/305 (3%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           ++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG  HLGLPVFNTV EAK 
Sbjct: 15  LYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKE 74
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
           +T A AS IYVPPPF               VVCITEGIPQ DMVRVK  L  Q KTRL+G
Sbjct: 75  QTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIG 134
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PNCPGVI PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS CVGIGGD
Sbjct: 135 PNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGD 194
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGT---EKPIVAFIAGL 273
           PFNGT+F DC+  F+ DP T               +AA  +K+  +    KP+V+FIAGL
Sbjct: 195 PFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGL 254
Query: 274 TAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 333
           TAPPGRRMG A          AI++GGKG A++KI  L+ AGV V  SPA++G  + + F
Sbjct: 255 TAPPGRRMGXA---------GAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEF 305
Query: 334 KQRGL 338
           ++R +
Sbjct: 306 EKRKM 310

>pdb|2NU7|A Chain A, C123as Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288

Iteration: 1
 Score =  328 bits (840), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 174/298 (58%), Positives = 201/298 (67%), Gaps = 11/298 (3%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 2   ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 61
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
            T A AS IYVP PF               ++ ITEGIP  DM+ VK  L+ ++  R++G
Sbjct: 62  ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PN PGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT  G GQSTCVGIGGD
Sbjct: 121 PNSPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
           P  G+NF+D +  F  DPQT               +AAA IKE  T KP+V +IAG+TAP
Sbjct: 181 PIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAP 239
Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 334
            G+RMGHAG         AI++GGKGTA +K   L  AGV  V S A IG A+  V K
Sbjct: 240 KGKRMGHAG---------AIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288

>pdb|2NUA|A Chain A, C123av Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288

Iteration: 1
 Score =  327 bits (839), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 174/298 (58%), Positives = 201/298 (67%), Gaps = 11/298 (3%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 2   ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 61
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
            T A AS IYVP PF               ++ ITEGIP  DM+ VK  L+ ++  R++G
Sbjct: 62  ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PN PGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT  G GQSTCVGIGGD
Sbjct: 121 PNVPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
           P  G+NF+D +  F  DPQT               +AAA IKE  T KP+V +IAG+TAP
Sbjct: 181 PIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAP 239
Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 334
            G+RMGHAG         AI++GGKGTA +K   L  AGV  V S A IG A+  V K
Sbjct: 240 KGKRMGHAG---------AIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288

>pdb|2NU8|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288

Iteration: 1
 Score =  327 bits (839), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 174/298 (58%), Positives = 201/298 (67%), Gaps = 11/298 (3%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 2   ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 61
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
            T A AS IYVP PF               ++ ITEGIP  DM+ VK  L+ ++  R++G
Sbjct: 62  ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PN PGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT  G GQSTCVGIGGD
Sbjct: 121 PNTPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
           P  G+NF+D +  F  DPQT               +AAA IKE  T KP+V +IAG+TAP
Sbjct: 181 PIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAP 239
Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 334
            G+RMGHAG         AI++GGKGTA +K   L  AGV  V S A IG A+  V K
Sbjct: 240 KGKRMGHAG---------AIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288

>pdb|2SCU|A Chain A, A Detailed Description Of The Structure Of Succinyl-Coa Synthetase From Escherichia Coli Length = 288

Iteration: 1
 Score =  310 bits (793), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 173/298 (58%), Positives = 200/298 (67%), Gaps = 11/298 (3%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 2   ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 61
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
            T A AS IYVP PF               ++ ITEGIP  DM+ VK  L+ ++  R++G
Sbjct: 62  ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PNCPGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT  G GQSTCVGIGGD
Sbjct: 121 PNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
           P  G+NF+D +  F  DPQT               +AAA IKE  T KP+V +IAG+TAP
Sbjct: 181 PIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAP 239
Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 334
            G+RMG A          AI++GGKGTA +K   L  AGV  V S A IG A+  V K
Sbjct: 240 KGKRMGXA---------GAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288

>pdb|2NU6|A Chain A, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288

Iteration: 1
 Score =  306 bits (785), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 172/298 (57%), Positives = 199/298 (66%), Gaps = 11/298 (3%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 2   ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 61
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
            T A AS IYVP PF               ++ ITEGIP  DM+ VK  L+ ++  R++G
Sbjct: 62  ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PN PGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT  G GQSTCVGIGGD
Sbjct: 121 PNAPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
           P  G+NF+D +  F  DPQT               +AAA IKE  T KP+V +IAG+TAP
Sbjct: 181 PIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAP 239
Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 334
            G+RMG A          AI++GGKGTA +K   L  AGV  V S A IG A+  V K
Sbjct: 240 KGKRMGXA---------GAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288

>pdb|2NU9|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase Orthorhombic Crystal Form Length = 288

Iteration: 1
 Score =  306 bits (783), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 172/298 (57%), Positives = 199/298 (66%), Gaps = 11/298 (3%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 2   ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 61
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
            T A AS IYVP PF               ++ ITEGIP  DM+ VK  L+ ++  R++G
Sbjct: 62  ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PN PGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT  G GQSTCVGIGGD
Sbjct: 121 PNTPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
           P  G+NF+D +  F  DPQT               +AAA IKE  T KP+V +IAG+TAP
Sbjct: 181 PIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAP 239
Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 334
            G+RMG A          AI++GGKGTA +K   L  AGV  V S A IG A+  V K
Sbjct: 240 KGKRMGXA---------GAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288

>pdb|2YV2|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain From Aeropyrum Pernix K1 Length = 297

Iteration: 1
 Score =  255 bits (652), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 137/290 (47%), Positives = 177/290 (61%), Gaps = 11/290 (3%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           V VD  TRV+ QGITG+ G+FH +  +EYGTK+V GVTP KGG+E  G+PV+++V EA A
Sbjct: 8   VLVDSETRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSEVHGVPVYDSVKEALA 67
Query: 97  ET-KANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
           E  + N S ++VP PF               VV ITEGIP HD +R       Q    ++
Sbjct: 68  EHPEINTSIVFVPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRF-VNYARQKGATII 126
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
           GPNCPG I PG+ K+GIMPG+I K G + +VSRSGTLTYE  +  T  G+GQST +GIGG
Sbjct: 127 GPNCPGAITPGQAKVGIMPGHIFKEGGVAVVSRSGTLTYEISYMLTRQGIGQSTVIGIGG 186
Query: 216 DPFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTA 275
           DP  G +F + +  F  DPQT                AA +IK+    KP++A+IAG TA
Sbjct: 187 DPIVGLSFTEALKLFQEDPQTEALVLIGEIGGDMEERAAEMIKKGEFTKPVIAYIAGRTA 246
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKI 325
           PP +RMGHAG         AI+  G GT + K+K LREAGV V E+P ++
Sbjct: 247 PPEKRMGHAG---------AIIMMGTGTYEGKVKALREAGVEVAETPFEV 287

>pdb|2YV1|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain From Methanocaldococcus Jannaschii Dsm 2661 Length = 294

Iteration: 1
 Score =  223 bits (567), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 126/289 (43%), Positives = 168/289 (58%), Gaps = 12/289 (4%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + +D+NT+ I QGITG+ G+FHT++ +E GTK+VGGVTP KGG    G+PVF+TV EA  
Sbjct: 8   ILLDENTKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAVK 67
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
           ET ANAS I+VP PF               +V ITE IP HD +            +++G
Sbjct: 68  ETDANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEF-VNYAEDVGVKIIG 126
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PN PG+  P   K+GI+P  + K G +G+VSRSGTLTYE   Q    G G STCVGIGGD
Sbjct: 127 PNTPGIASPKVGKLGIIPMEVLKEGSVGMVSRSGTLTYEIAHQIKKAGFGVSTCVGIGGD 186
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
           P  G  + + +  F  D +T               +AA  I++   +KP++ +IAG +AP
Sbjct: 187 PIVGLRYKEVLDLFEKDDETEAIVMIGEIGGGAEEEAAKFIEK--MKKPVIGYIAGQSAP 244
Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKI 325
            G+RMGHAG         AIV  GKGTA+ K+K L EAG  V ++ + I
Sbjct: 245 EGKRMGHAG---------AIVEKGKGTAESKMKALEEAGAYVAKNISDI 284

>pdb|3UFX|A Chain A, Thermus Aquaticus Succinyl-coa Synthetase In Complex With Gdp-mn2+ Length = 296

Iteration: 1
 Score =  219 bits (558), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 134/289 (46%), Positives = 175/289 (60%), Gaps = 11/289 (3%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + V+K TRV+ QGITG+ G FHT+Q + YGTK+V GVTP KGG E LG+PV++TV EA A
Sbjct: 2   ILVNKETRVLVQGITGREGQFHTKQMLSYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVA 61
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
             + +AS I+VP P                +V ITEGIP  DMVR    +     +RL+G
Sbjct: 62  HHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALG-SRLIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
            NCPG+I   E KIGIMPG++ K GR+GI+SRSGTLTYEA    +  GLG +T VGIGGD
Sbjct: 121 GNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
           P  GT F D +  F  DP+T               +AAA +K+   +KP+V FI G +AP
Sbjct: 181 PVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKDH-MKKPVVGFIGGRSAP 239
Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKI 325
            G+RMGHAG         AI+ G  GT + K++   EAG+ V ++  +I
Sbjct: 240 KGKRMGHAG---------AIIMGNVGTPESKLRAFAEAGIPVADTIDEI 279

>pdb|1OI7|A Chain A, The Crystal Structure Of Succinyl-Coa Synthetase Alpha Subunit From Thermus Thermophilus Length = 288

Iteration: 1
 Score =  218 bits (554), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 133/289 (46%), Positives = 175/289 (60%), Gaps = 11/289 (3%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + V++ TRV+ QGITG+ G FHT+Q + YGTK+V GVTP KGG E LG+PV++TV EA A
Sbjct: 2   ILVNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVA 61
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
             + +AS I+VP P                +V ITEGIP  DMVR    +     +RL+G
Sbjct: 62  HHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALG-SRLIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
            NCPG+I   E KIGIMPG++ K GR+GI+SRSGTLTYEA    +  GLG +T VGIGGD
Sbjct: 121 GNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
           P  GT F D +  F  DP+T               +AAA +K+   +KP+V FI G +AP
Sbjct: 181 PVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKDH-MKKPVVGFIGGRSAP 239
Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKI 325
            G+RMGHAG         AI+ G  GT + K++   EAG+ V ++  +I
Sbjct: 240 KGKRMGHAG---------AIIMGNVGTPESKLRAFAEAGIPVADTIDEI 279

>pdb|3MWE|B Chain B, Truncated Human Atp-Citrate Lyase With Tartrate Bound Length = 335

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 92/220 (41%), Gaps = 21/220 (9%)
Query: 127 VVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIG--------IMPGYIH 178
           +  I EGIP+  + R      +Q    ++GP   G IKPG  KIG        I+   ++
Sbjct: 108 IAIIAEGIPEA-LTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 166
Query: 179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTXX 238
           +PG +  VSRSG ++ E     +    G    V IGGD + G+ F+D V ++   P    
Sbjct: 167 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 226
Query: 239 XXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTA---PPGRRMGHAGVDVYTIFGSA 295
                             IKE    KPIV +  G  A       + GHAG         A
Sbjct: 227 IVVLGEIGGTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAG---------A 277
Query: 296 IVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
             +    TA  K + L+EAGV V  S  ++G  +  V++ 
Sbjct: 278 CANQASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYED 317

>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate Bound Length = 829

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 92/220 (41%), Gaps = 21/220 (9%)
Query: 127 VVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIG--------IMPGYIH 178
           +  I EGIP+  + R      +Q    ++GP   G IKPG  KIG        I+   ++
Sbjct: 594 IAIIAEGIPEA-LTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 652
Query: 179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTXX 238
           +PG +  VSRSG ++ E     +    G    V IGGD + G+ F+D V ++   P    
Sbjct: 653 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 712
Query: 239 XXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTA---PPGRRMGHAGVDVYTIFGSA 295
                             IKE    KPIV +  G  A       + GHAG         A
Sbjct: 713 IVVLGEIGGTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAG---------A 763
Query: 296 IVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
             +    TA  K + L+EAGV V  S  ++G  +  V++ 
Sbjct: 764 CANQASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYED 803

>pdb|3MWD|B Chain B, Truncated Human Atp-Citrate Lyase With Citrate Bound Length = 334

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 91/220 (41%), Gaps = 21/220 (9%)
Query: 127 VVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIG--------IMPGYIH 178
           +  I EGIP+  + R      +Q    ++GP   G IKPG  KIG        I+   ++
Sbjct: 108 IAIIAEGIPEA-LTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGXLDNILASKLY 166
Query: 179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTXX 238
           +PG +  VSRSG  + E     +    G    V IGGD + G+ F D V ++   P    
Sbjct: 167 RPGSVAYVSRSGGXSNELNNIISRTTDGVYEGVAIGGDRYPGSTFXDHVLRYQDTPGVKX 226
Query: 239 XXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTA---PPGRRMGHAGVDVYTIFGSA 295
                             IKE    KPIV +  G  A       + GHAG         A
Sbjct: 227 IVVLGEIGGTEEYKICRGIKEGRLTKPIVCWCIGTCATXFSSEVQFGHAG---------A 277
Query: 296 IVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
             +    TA  K + L+EAGV V  S  ++G  +  V++ 
Sbjct: 278 CANQASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYED 317

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	340
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	0.0
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	0.0
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	0.0
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	0.0
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	0.0
3mwd_B	334	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	1e-166
3pff_A	829	ATP-citrate synthase; phosphohistidine, organic ac	1e-155
3dmy_A	480	Protein FDRA; predicted actyl-COA synthetase, nysg	1e-109
2csu_A	457	457AA long hypothetical protein; structural genomi	7e-11

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* Length = 305

 Score =  562 bits (1452), Expect = 0.0
 Identities = 211/306 (68%), Positives = 245/306 (80%), Gaps = 12/306 (3%)

Query: 36  AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
            ++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG  HLGLPVFNTV EAK
Sbjct: 8   HLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAK 67

Query: 96  AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
            +T A AS IYVPPPFAAAAI EA++AE+ LVVCITEGIPQ DMVRVK  L  Q KTRL+
Sbjct: 68  EQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLI 127

Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
           GPNCPGVI PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS CVGIGG
Sbjct: 128 GPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGG 187

Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTE---KPIVAFIAG 272
           DPFNGT+F DC+  F+ DP TEGIILIGEIGG AEE+AA  +K+  +    KP+V+FIAG
Sbjct: 188 DPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAG 247

Query: 273 LTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEV 332
           LTAPPGRRMGHAG         AI++GGKG A++KI  L+ AGV V  SPA++G  + + 
Sbjct: 248 LTAPPGRRMGHAG---------AIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKE 298

Query: 333 FKQRGL 338
           F++R +
Sbjct: 299 FEKRKM 304

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} Length = 297

 Score =  552 bits (1425), Expect = 0.0
 Identities = 154/301 (51%), Positives = 204/301 (67%), Gaps = 11/301 (3%)

Query: 36  AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
           AV VD  TRV+ QGITG+ G+FH +  +EYGTK+V GVTP KGG+E  G+PV+++V EA 
Sbjct: 7   AVLVDSETRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSEVHGVPVYDSVKEAL 66

Query: 96  AE-TKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL 154
           AE  + N S ++VP PFA  A+ EA++A + LVV ITEGIP HD +R       Q    +
Sbjct: 67  AEHPEINTSIVFVPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYAR-QKGATI 125

Query: 155 VGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIG 214
           +GPNCPG I PG+ K+GIMPG+I K G + +VSRSGTLTYE  +  T  G+GQST +GIG
Sbjct: 126 IGPNCPGAITPGQAKVGIMPGHIFKEGGVAVVSRSGTLTYEISYMLTRQGIGQSTVIGIG 185

Query: 215 GDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLT 274
           GDP  G +F + +  F  DPQTE ++LIGEIGG  EE AA +IK+    KP++A+IAG T
Sbjct: 186 GDPIVGLSFTEALKLFQEDPQTEALVLIGEIGGDMEERAAEMIKKGEFTKPVIAYIAGRT 245

Query: 275 APPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 334
           APP +RMGHAG         AI+  G GT + K+K LREAGV V E+P ++   + +  +
Sbjct: 246 APPEKRMGHAG---------AIIMMGTGTYEGKVKALREAGVEVAETPFEVPELVRKALR 296

Query: 335 Q 335
           +
Sbjct: 297 R 297

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* Length = 288

 Score =  550 bits (1419), Expect = 0.0
 Identities = 191/299 (63%), Positives = 226/299 (75%), Gaps = 11/299 (3%)

Query: 36  AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
           ++ +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA 
Sbjct: 1   SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 60

Query: 96  AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
           A T A AS IYVP PF   +ILEA++A + L++ ITEGIP  DM+ VK  L+ ++  R++
Sbjct: 61  AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMI 119

Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
           GPN PGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT  G GQSTCVGIGG
Sbjct: 120 GPNTPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGG 179

Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
           DP  G+NF+D +  F  DPQTE I++IGEIGG+AEE+AAA IKE  T KP+V +IAG+TA
Sbjct: 180 DPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTA 238

Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 334
           P G+RMGHAG         AI++GGKGTA +K   L  AGV  V S A IG A+  V K
Sbjct: 239 PKGKRMGHAG---------AIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} Length = 294

 Score =  546 bits (1410), Expect = 0.0
 Identities = 143/300 (47%), Positives = 195/300 (65%), Gaps = 12/300 (4%)

Query: 36  AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
            + +D+NT+ I QGITG+ G+FHT++ +E GTK+VGGVTP KGG    G+PVF+TV EA 
Sbjct: 7   MILLDENTKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAV 66

Query: 96  AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
            ET ANAS I+VP PFA  A+ EA++A ++L+V ITE IP HD +            +++
Sbjct: 67  KETDANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAE-DVGVKII 125

Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
           GPN PG+  P   K+GI+P  + K G +G+VSRSGTLTYE   Q    G G STCVGIGG
Sbjct: 126 GPNTPGIASPKVGKLGIIPMEVLKEGSVGMVSRSGTLTYEIAHQIKKAGFGVSTCVGIGG 185

Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
           DP  G  + + +  F  D +TE I++IGEIGG AEE+AA  I++   +KP++ +IAG +A
Sbjct: 186 DPIVGLRYKEVLDLFEKDDETEAIVMIGEIGGGAEEEAAKFIEK--MKKPVIGYIAGQSA 243

Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
           P G+RMGHAG         AIV  GKGTA+ K+K L EAG  V ++ + I   +  +  +
Sbjct: 244 PEGKRMGHAG---------AIVEKGKGTAESKMKALEEAGAYVAKNISDIPKLLAGILGK 294

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 Length = 288

 Score =  542 bits (1399), Expect = 0.0
 Identities = 151/297 (50%), Positives = 198/297 (66%), Gaps = 11/297 (3%)

Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + V++ TRV+ QGITG+ G FHT+Q + YGTK+V GVTP KGG E LG+PV++TV EA A
Sbjct: 2   ILVNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVA 61

Query: 97  ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
             + +AS I+VP P AA A LEA  A + L+V ITEGIP  DMVR    +     +RL+G
Sbjct: 62  HHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIK-ALGSRLIG 120

Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
            NCPG+I   E KIGIMPG++ K GR+GI+SRSGTLTYEA    +  GLG +T VGIGGD
Sbjct: 121 GNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGD 180

Query: 217 PFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAP 276
           P  GT F D +  F  DP+TE ++LIGEIGG+ EE+AAA +K+    KP+V FI G +AP
Sbjct: 181 PVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKDHMK-KPVVGFIGGRSAP 239

Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 333
            G+RMGHAG         AI+ G  GT + K++   EAG+ V ++  +I   + +  
Sbjct: 240 KGKRMGHAG---------AIIMGNVGTPESKLRAFAEAGIPVADTIDEIVELVKKAL 287

>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* Length = 334

 Score =  466 bits (1200), Expect = e-166
 Identities = 87/324 (26%), Positives = 141/324 (43%), Gaps = 34/324 (10%)

Query: 36  AVFVDKNTRVICQGITGK--NGTFHTEQAIEY-GTKMVGGVTPKKG--------GTEHLG 84
                ++T+ I  G+  +   G    +         +   V P  G        G + + 
Sbjct: 4   TTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEIL 63

Query: 85  LPVFNTVAEA-KAETKANASAIYVPPPFAAAAILEAME-AELDLVVCITEGIPQHDMVRV 142
           +PVF  +A+A +   + +    +     A  + +E M  A++  +  I EGIP+    ++
Sbjct: 64  IPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKL 123

Query: 143 KAALNNQSKTRLVGPNCPGVIKPGECKIG--------IMPGYIHKPGRIGIVSRSGTLTY 194
               + Q    ++GP   G IKPG  KIG        I+   +++PG +  VSRSG ++ 
Sbjct: 124 IKKAD-QKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSN 182

Query: 195 EAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAA 254
           E     +    G    V IGGD + G+ F+D V ++   P  + I+++GEIGGT E    
Sbjct: 183 ELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKIC 242

Query: 255 ALIKESGTEKPIVAFIAGLTA---PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTL 311
             IKE    KPIV +  G  A       + GHAG         A  +    TA  K + L
Sbjct: 243 RGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAG---------ACANQASETAVAKNQAL 293

Query: 312 REAGVTVVESPAKIGAAMLEVFKQ 335
           +EAGV V  S  ++G  +  V++ 
Sbjct: 294 KEAGVFVPRSFDELGEIIQSVYED 317

>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Length = 829

 Score =  454 bits (1169), Expect = e-155
 Identities = 88/339 (25%), Positives = 143/339 (42%), Gaps = 34/339 (10%)

Query: 21  CGQSRSFTTAPPPAPAVFVDKNTRVICQGITGKN--GTFHTEQAIEY-GTKMVGGVTPKK 77
              S     +          ++T+ I  G+  +   G    +         +   V P  
Sbjct: 475 PQDSVPSPRSLQGKSTTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFT 534

Query: 78  G--------GTEHLGLPVFNTVAEA-KAETKANASAIYVPPPFAAAAILEAME-AELDLV 127
           G        G + + +PVF  +A+A +   + +    +     A  + +E M  A++  +
Sbjct: 535 GDHKQKFYWGHKEILIPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTI 594

Query: 128 VCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIG--------IMPGYIHK 179
             I EGIP+    ++    + Q    ++GP   G IKPG  KIG        I+   +++
Sbjct: 595 AIIAEGIPEALTRKLIKKAD-QKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYR 653

Query: 180 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGI 239
           PG +  VSRSG ++ E     +    G    V IGGD + G+ F+D V ++   P  + I
Sbjct: 654 PGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMI 713

Query: 240 ILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA---PPGRRMGHAGVDVYTIFGSAI 296
           +++GEIGGT E      IKE    KPIV +  G  A       + GHAG         A 
Sbjct: 714 VVLGEIGGTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAG---------AC 764

Query: 297 VSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
            +    TA  K + L+EAGV V  S  ++G  +  V++ 
Sbjct: 765 ANQASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYED 803

>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} Length = 480

 Score =  325 bits (836), Expect = e-109
 Identities = 50/270 (18%), Positives = 98/270 (36%), Gaps = 24/270 (8%)

Query: 61  QAIEYGTKMVGGVTPKKGGTEHL-GLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA 119
           Q +E   K    +    G ++ L  +  +++  +      AN + I V   +AA    +A
Sbjct: 2   QQLEEALK---QLAQGSGSSQALTQVRRWDSACQK--LPDANLALISVAGEYAAELANQA 56

Query: 120 MEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHK 179
           ++  L+ V+  ++ +   D +++K     +    ++GP+C   +  G     +    +  
Sbjct: 57  LDRNLN-VMMFSDNVTLEDEIQLKTRAR-EKGLLVMGPDCGTSMIAG---TPLAFANVMP 111

Query: 180 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG----DPFNGTNFVDCVTKFIADPQ 235
            G IG++  SGT   E   Q    G G +  +G+GG        G + +  +    AD +
Sbjct: 112 EGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEK 171

Query: 236 TEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSA 295
           +E +  + +    A         ++   KP VA   G T    R            F S+
Sbjct: 172 SEVLAFVSKPPAEAVRLKIVNAMKATG-KPTVALFLGYTPAVARDENV-------WFASS 223

Query: 296 IVSGG-KGTAQDKIKTLREAGVTVVESPAK 324
           +           ++   R A   V      
Sbjct: 224 LDEAARLACLLSRVTARRNAIAPVSSGFIC 253

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Length = 457

 Score = 61.9 bits (151), Expect = 7e-11
 Identities = 57/269 (21%), Positives = 103/269 (38%), Gaps = 55/269 (20%)

Query: 73  VTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCIT- 131
           V  K    E  G+  + +V +   E   + + I VP  F    +++  E  +  VV IT 
Sbjct: 42  VNIK--EEEVQGVKAYKSVKDIPDE--IDLAIIVVPKRFVKDTLIQCGEKGVKGVVIITA 97

Query: 132 -------EGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIH--KPGR 182
                  EG  +   +   A    +   R++GPNC G++      + +   +I   K G 
Sbjct: 98  GFGETGEEGKREEKELVEIAH---KYGMRIIGPNCVGIMNTH---VDLNATFITVAKKGN 151

Query: 183 IGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGT--NFVDCVTKFIADPQTEGII 240
           +  +S+SG L    V++T    +G S  + +G    N    +F + +       + + I 
Sbjct: 152 VAFISQSGALGAGIVYKTIKEDIGFSKFISVG----NMADVDFAELMEYLADTEEDKAIA 207

Query: 241 LIGE-IGGTAEEDAAALI---KESGTEKPIVAFIAGLTAPPGRR--MGHAG--VDVYTIF 292
           L  E +      +    +   K    +KPI+A  AG +   G R    H G     + I+
Sbjct: 208 LYIEGVR-----NGKKFMEVAKRVTKKKPIIALKAGKSE-SGARAASSHTGSLAGSWKIY 261

Query: 293 GSAIVSGGKGTAQDKIKTLREAGVTVVES 321
            +A                +++GV V  +
Sbjct: 262 EAA---------------FKQSGVLVANT 275

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	340
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	100.0
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	100.0
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	100.0
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	100.0
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	100.0
3mwd_B	334	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	100.0
2csu_A	457	457AA long hypothetical protein; structural genomi	100.0
3pff_A	829	ATP-citrate synthase; phosphohistidine, organic ac	100.0
3dmy_A	480	Protein FDRA; predicted actyl-COA synthetase, nysg	100.0
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	99.92
2duw_A	145	Putative COA-binding protein; ligand binding prote	99.92
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	99.91
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	99.91
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	99.91
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	99.36
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	99.28
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	99.13
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	99.13
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	99.05
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	98.99
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	98.78
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	98.76
1vm6_A	228	DHPR, dihydrodipicolinate reductase; TM1520, struc	98.75
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	98.75
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.74
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	98.73
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	98.71
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	98.69
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	98.68
4had_A	350	Probable oxidoreductase protein; structural genomi	98.68
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	98.67
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.67
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	98.66
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	98.66
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.66
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	98.64
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	98.64
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	98.64
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	98.64
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	98.62
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	98.61
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	98.61
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	98.61
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	98.6
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	98.6
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	98.59
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	98.59
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	98.58
1ydw_A	362	AX110P-like protein; structural genomics, protein	98.58
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	98.58
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	98.58
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	98.56
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	98.55
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	98.55
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	98.55
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	98.52
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	98.52
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	98.51
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	98.5
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	98.5
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	98.5
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	98.49
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	98.48
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.45
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	98.45
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	98.44
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	98.43
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	98.41
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	98.4
4h3v_A	390	Oxidoreductase domain protein; structural genomics	98.39
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	98.36
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	98.35
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	98.29
2csu_A	457	457AA long hypothetical protein; structural genomi	98.28
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	98.13
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.1
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	98.07
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	97.95
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	97.93
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.88
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	97.86
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.85
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	97.82
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.81
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	97.78
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	97.78
3dmy_A	480	Protein FDRA; predicted actyl-COA synthetase, nysg	97.71
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.69
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.68
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.67
3ufx_B	397	Succinyl-COA synthetase beta subunit; ATP-grAsp fo	97.61
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.61
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.6
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.6
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.59
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.57
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	97.56
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.54
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.51
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.51
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.5
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.48
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.48
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	97.45
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	97.43
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.4
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.39
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	97.32
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	97.32
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	97.32
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.31
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.29
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	97.28
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	97.27
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	97.26
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.25
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.23
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.22
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.21
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.21
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.21
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.19
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.18
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.18
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	97.17
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.1
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	97.08
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.07
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.06
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.05
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	97.04
2fp4_B	395	Succinyl-COA ligase [GDP-forming] beta-chain, mito	97.03
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.03
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	97.02
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	97.02
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.01
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	96.97
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	96.97
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.93
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	96.93
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	96.91
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	96.91
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.9
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	96.85
2nu8_B	388	SCS-beta, succinyl-COA synthetase beta chain; citr	96.81
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	96.8
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	96.8
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.76
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.76
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	96.74
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	96.74
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	96.71
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	96.7
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	96.69
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	96.67
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	96.65
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	96.64
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	96.62
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	96.59
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	96.57
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	96.57
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	96.57
2g0t_A	350	Conserved hypothetical protein; structural genomic	96.55
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.5
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	96.49
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	96.45
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	96.44
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.43
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.39
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.38
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	96.33
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	96.29
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	96.28
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	96.25
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	96.23
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	96.21
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.17
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.16
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.1
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	96.06
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	96.06
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.05
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.03
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	95.97
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.95
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	95.91
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	95.91
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	95.91
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	95.91
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.91
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	95.88
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.86
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	95.86
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	95.86
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.86
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	95.84
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	95.84
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.79
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	95.78
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.77
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	95.75
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	95.72
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	95.72
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	95.72
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	95.71
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	95.68
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	95.67
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	95.67
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	95.57
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	95.5
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	95.48
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	95.46
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	95.46
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	95.45
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	95.44
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	95.38
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.38
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	95.29
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	95.28
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	95.28
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	95.26
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	95.26
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	95.25
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	95.23
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.2
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	94.19
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	95.19
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	95.18
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	95.16
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	95.13
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	95.13
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.1
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	95.08
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	95.08
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	95.08
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	95.06
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.06
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	95.02
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	94.99
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	94.98
2obn_A	349	Hypothetical protein; structural genomics, joint c	94.95
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	94.93
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	94.93
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	94.91
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	94.9
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	94.88
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	94.85
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	94.84
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	94.83
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	94.81
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	94.79
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	94.79
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	94.77
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	94.76
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	94.73
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	94.7
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	94.69
1r0k_A	388	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	94.67
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	94.65
3c85_A	183	Putative glutathione-regulated potassium-efflux S	94.57
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	94.56
3a06_A	376	1-deoxy-D-xylulose 5-phosphate reductoisomerase; M	94.56
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	94.54
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	94.5
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	94.46
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	94.45
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	94.43
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	94.4
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	94.34
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	94.33
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	94.31
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	94.24
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	94.22
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	94.2
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	94.16
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	94.13
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	94.12
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	94.1
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	94.05
2yv3_A	331	Aspartate-semialdehyde dehydrogenase; aspartate pa	94.04
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	94.0
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	93.97
1id1_A	153	Putative potassium channel protein; RCK domain, E.	93.82
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	93.82
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.79
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	93.77
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	93.75
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	93.74
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	93.7
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	93.68
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	93.65
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	93.58
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	93.5
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	93.46
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	93.34
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	93.31
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	93.3
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	93.27
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	93.26
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	93.19
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	93.03
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	93.0
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	93.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	92.99
1xq6_A	253	Unknown protein; structural genomics, protein stru	92.99
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	92.95
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	92.88
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	92.85
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	92.81
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	92.81
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	92.79
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	92.63
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	92.57
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	92.45
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	92.41
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	92.35
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	92.31
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	92.25
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	92.24
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	92.23
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	92.1
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	92.07
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	92.07
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	92.07
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	91.92
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	91.86
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	91.68
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	91.63
2g6t_A	306	Uncharacterized protein, homolog HI1244 from haemo	91.54
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	91.51
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	91.48
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	91.34
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	91.33
1gr0_A	367	Inositol-3-phosphate synthase; isomerase, oxidored	91.22
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	91.15
3pym_A	332	GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase	91.02
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	91.0
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	90.89
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	90.82
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	90.81
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	90.56
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	90.47
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	90.4
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	90.25
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	90.14
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	90.12
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	90.05
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	89.7
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	89.59
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	89.39
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	89.17
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	89.01
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	88.95
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	88.95
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	88.59
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	88.48
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	88.27
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	88.19
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	88.15
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	88.11
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	88.02
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	88.0
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	87.9
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	87.87
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	87.87
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	87.85
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	87.81
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	87.72
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	87.13
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	87.09
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	87.03
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	86.93
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	86.9
3lvf_P	338	GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase	86.71
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	86.64
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	86.56
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	86.56
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	86.5
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	86.31
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	86.3
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	86.28
3doc_A	335	Glyceraldehyde 3-phosphate dehydrogenase; ssgcid,	86.25
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	86.08
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	86.0
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	85.66
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	85.49
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	85.08
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	85.06
4dib_A	345	GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n	85.0
3v1y_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	84.8
4g65_A	461	TRK system potassium uptake protein TRKA; structur	84.01
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	83.82
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	83.75
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	83.62
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	83.53
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	83.53
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	83.43
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	83.41
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	83.07
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	82.58
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	82.34
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	82.17
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	82.16
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	81.84
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	81.78
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	81.76
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	81.67
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	81.66
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	81.64
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	81.61
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	80.79
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	80.69
4f6c_A	427	AUSA reductase domain protein; thioester reductase	80.67
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	80.19
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	80.17

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=100.00  E-value=6e-72  Score=535.86  Aligned_cols=299  Identities=68%  Similarity=1.107  Sum_probs=272.4

Q ss_pred             CCCCCCCCcccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEE
Q 019500           26 SFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAI  105 (340)
Q Consensus        26 ~~~~~~~~l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi  105 (340)
                      +|+++.  +..||.|++++ +|+|+|+++|+.++++++++||+++++|||+..|++++|+|||+|++|+++++++|++++
T Consensus         1 ~~~~~~--~~~l~~~~sia-VV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~vD~avI   77 (305)
T 2fp4_A            1 SYTASR--KHLYVDKNTKV-ICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVI   77 (305)
T ss_dssp             CTGGGG--GGGCCCTTCEE-EEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEE
T ss_pred             CchhhH--HHHHhCCCcEE-EEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcceECCeeeechHHHhhhcCCCCEEEE
Confidence            477774  77788887764 456999999999999999999998889999975578999999999999998446999999


Q ss_pred             ecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccC-CcEEEccCCCCcccCC-CcccccCCCCCCCCCcE
Q 019500          106 YVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQS-KTRLVGPNCPGVIKPG-ECKIGIMPGYIHKPGRI  183 (340)
Q Consensus       106 ~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~-girviGPNc~Gi~~p~-~~~~~~~~~~~~~~G~v  183 (340)
                      ++|++.+++++++|+++|++.+||+|+||++++++++.+.+ +++ |++++||||+|+++|. +++ +++|...++||+|
T Consensus        78 ~vP~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a-~~~~gi~liGPnc~Gii~p~~~~~-~~~~~~~~~~G~v  155 (305)
T 2fp4_A           78 YVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRL-LRQGKTRLIGPNCPGVINPGECKI-GIMPGHIHKKGRI  155 (305)
T ss_dssp             CCCHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHH-TTCSSCEEECSSSCEEEETTTEEE-ESSCGGGCCEEEE
T ss_pred             ecCHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHH-HhcCCcEEEeCCCCeEecccccce-eeccccCCCCCCE
Confidence            99999999999999999999999999999988877888876 788 9999999999999998 443 4556656889999


Q ss_pred             EEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC--
Q 019500          184 GIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG--  261 (340)
Q Consensus       184 alvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r--  261 (340)
                      |||||||++++++++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|+||+|++|++++++++|+++++  
T Consensus       156 a~vSqSG~l~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~g~~e~~~~~f~~~~~~~  235 (305)
T 2fp4_A          156 GIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSG  235 (305)
T ss_dssp             EEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESSSSHHHHHHHHHHHHSCS
T ss_pred             EEEecchHHHHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecCCchhhHHHHHHHHHHHh
Confidence            999999999999999999999999999999999877899999999999999999999999999998899999999876  


Q ss_pred             -CCCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHHHHHHHHHHHhcCC
Q 019500          262 -TEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGL  338 (340)
Q Consensus       262 -~~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el~~~~~~~~~~~~~  338 (340)
                       ++||||++|+||+++.|+++||||         |+++++.|++++|+++|||+|++++++++||+|++++++++.++
T Consensus       236 ~~~KPVv~~k~G~s~~~g~~~~Htg---------al~~~~~g~~~~~~aa~~~aGv~~v~~~~el~~~~~~~~~~~~~  304 (305)
T 2fp4_A          236 PKSKPVVSFIAGLTAPPGRRMGHAG---------AIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEKRKM  304 (305)
T ss_dssp             TTCCCEEEEEECTTCCTTCCCSSTT---------CCCBTTBCCHHHHHHHHHHTTCEECSSTTCHHHHHHHHHHHTTC
T ss_pred             cCCCCEEEEEecCCccccccccchh---------hhhccCCccHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHhccC
Confidence             599999999999995488899999         99887778999999999999999999999999999999987654

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=100.00  E-value=7.5e-72  Score=533.42  Aligned_cols=289  Identities=52%  Similarity=0.878  Sum_probs=246.6

Q ss_pred             cccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCC-CcEEEEecChhhH
Q 019500           34 APAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETK-ANASAIYVPPPFA  112 (340)
Q Consensus        34 l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~-vDlavi~vp~~~v  112 (340)
                      +..||.|+ ++|+|+|+|+++|+.+.++++++||+++++|||+..|+++.|+|+|+|++|++++++ +|++++|+|++.+
T Consensus         6 ~~~l~~~~-~~vvV~Gasg~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~~DvaIi~vp~~~~   84 (297)
T 2yv2_A            6 MAVLVDSE-TRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSEVHGVPVYDSVKEALAEHPEINTSIVFVPAPFA   84 (297)
T ss_dssp             ---CCSTT-CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHCTTCCEEEECCCGGGH
T ss_pred             hhHhhCCC-CEEEEECCCCCHHHHHHHHHHhCCCcEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCCEEEEecCHHHH
Confidence            66677665 467788999999999999999999998899999976678999999999999997434 9999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCCCCCCcEEEEecChH
Q 019500          113 AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYIHKPGRIGIVSRSGT  191 (340)
Q Consensus       113 ~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~-~~~~~~~~~~~~~~G~valvSQSG~  191 (340)
                      ++++++|+++|++.+|++|+||++++.+++.+++ +++|++++||||+|++||+ +++ +++|...++||+||||||||+
T Consensus        85 ~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A-~~~gi~viGPNc~Gii~~~~~~~-~~~~~~~~~~G~va~vSqSG~  162 (297)
T 2yv2_A           85 PDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYA-RQKGATIIGPNCPGAITPGQAKV-GIMPGHIFKEGGVAVVSRSGT  162 (297)
T ss_dssp             HHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHH-HHHTCEEECSSSCEEEETTTEEE-ESCCGGGCCEEEEEEEESCHH
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH-HHcCCEEEcCCCCeeEcccccce-eecccCCCCCCCEEEEECCHH
Confidence            9999999999999989999999998888888877 7899999999999999998 444 345555678999999999999


Q ss_pred             HHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEe
Q 019500          192 LTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIA  271 (340)
Q Consensus       192 l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvvlk~  271 (340)
                      +++++++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|+||+|++|++++++++|+++.+++||||+||+
T Consensus       163 l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~~~~~~~~~~~~~~~~~~~KPVv~~k~  242 (297)
T 2yv2_A          163 LTYEISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLIGEIGGDMEERAAEMIKKGEFTKPVIAYIA  242 (297)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEECSSSSHHHHHHHHHHTTSCCSCEEEEES
T ss_pred             HHHHHHHHHHHcCCCeeEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCCCHHHHHHHHHHhccCCCCEEEEEe
Confidence            99999999999999999999999998778899999999999999999999999999999999999998678999999999


Q ss_pred             CCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHHHHHHHHHHH
Q 019500          272 GLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK  334 (340)
Q Consensus       272 Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el~~~~~~~~~  334 (340)
                      ||+++.|+++||||         |+++++.|++++|+++|||+|+++++|++||+|+++++|+
T Consensus       243 G~s~~~~~~~sHtg---------al~~~~~g~~~~~~aa~~~aGv~~v~~~~el~~~~~~~~~  296 (297)
T 2yv2_A          243 GRTAPPEKRMGHAG---------AIIMMGTGTYEGKVKALREAGVEVAETPFEVPELVRKALR  296 (297)
T ss_dssp             CCC---------------------------CSHHHHHHHHHTTTCEEESSGGGHHHHHHHHC-
T ss_pred             CCCCccccccCCcc---------ccccCCCCCHHHHHHHHHHcCCeEeCCHHHHHHHHHHHhh
Confidence            99996588899999         9987777999999999999999999999999999998763

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=100.00  E-value=1e-71  Score=530.29  Aligned_cols=285  Identities=52%  Similarity=0.863  Sum_probs=248.0

Q ss_pred             ccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        37 lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      +|.++.++|+|+|+|+++|+.+.++++++||+++++|||+..|+++.|+|+|+|++|+++++++|++++|+|++.+++++
T Consensus         2 ~~~~~~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~~~~~~~~   81 (288)
T 1oi7_A            2 ILVNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAA   81 (288)
T ss_dssp             CSCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHH
T ss_pred             eecCCCCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCceECCEEeeCCHHHHhhcCCCCEEEEecCHHHHHHHH
Confidence            56677889999999999999999999999999889999998667899999999999999855699999999999999999


Q ss_pred             HHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCCCCCCcEEEEecChHHHHH
Q 019500          117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYIHKPGRIGIVSRSGTLTYE  195 (340)
Q Consensus       117 ~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~-~~~~~~~~~~~~~~G~valvSQSG~l~~~  195 (340)
                      ++|+++|++.+|++|+||++++.+++.+.+ +++|++++||||+|++||. +++. ++|...++||+||||||||+++++
T Consensus        82 ~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a-~~~gi~vigPNc~Gii~~~~~~~~-~~~~~~~~~G~va~vsqSG~l~~~  159 (288)
T 1oi7_A           82 LEAAHAGIPLIVLITEGIPTLDMVRAVEEI-KALGSRLIGGNCPGIISAEETKIG-IMPGHVFKRGRVGIISRSGTLTYE  159 (288)
T ss_dssp             HHHHHTTCSEEEECCSCCCHHHHHHHHHHH-HHHTCEEEESSSCEEEETTTEEEE-SSCGGGCCEEEEEEEESCHHHHHH
T ss_pred             HHHHHCCCCEEEEECCCCCHHHHHHHHHHH-HHcCCEEEeCCCCeEEcCCCceeE-EcccCCCCCCCEEEEECCHHHHHH
Confidence            999999999999999999998888888876 7899999999999999998 4443 345556789999999999999999


Q ss_pred             HHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEeCCCC
Q 019500          196 AVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA  275 (340)
Q Consensus       196 ~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvvlk~Grs~  275 (340)
                      +++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|+||+|++|++++++++|+++ +++||||+||+||++
T Consensus       160 ~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~t~~I~l~~E~~~~~~~~~~~~~~~-~~~KPVv~~k~G~~~  238 (288)
T 1oi7_A          160 AAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKD-HMKKPVVGFIGGRSA  238 (288)
T ss_dssp             HHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEECSSSSHHHHHHHHHHH-HCCSCEEEEESCC--
T ss_pred             HHHHHHhCCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCCCHHHHHHHHHHh-cCCCCEEEEEecCCC
Confidence            9999999999999999999998778999999999999999999999999999999999999987 579999999999999


Q ss_pred             CCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHHHHHHHHHH
Q 019500          276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF  333 (340)
Q Consensus       276 ~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el~~~~~~~~  333 (340)
                      +.|+++||||         |+++++.|++++|+++|||+|++++++++||+|++++++
T Consensus       239 ~~~~~~~Htg---------al~~~~~g~~~~~~aa~~~aGv~~~~~~~el~~~~~~~~  287 (288)
T 1oi7_A          239 PKGKRMGHAG---------AIIMGNVGTPESKLRAFAEAGIPVADTIDEIVELVKKAL  287 (288)
T ss_dssp             -------------------------CCSHHHHHHHHHHHTCCBCSSHHHHHHHHHHHH
T ss_pred             CccccCcchh---------hcccCCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHHh
Confidence            5488899999         998777799999999999999999999999999999876

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=1.3e-71  Score=531.00  Aligned_cols=288  Identities=48%  Similarity=0.822  Sum_probs=245.7

Q ss_pred             CcccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhH
Q 019500           33 PAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFA  112 (340)
Q Consensus        33 ~l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v  112 (340)
                      .|..||.|++ +++|+|+|+++|+.+.++++++||+++++|||+..++++.|+|+|+|++|+++++++|++++|+|++.+
T Consensus         5 ~l~~l~~~~~-~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~ii~vp~~~~   83 (294)
T 2yv1_A            5 DKMILLDENT-KAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAVKETDANASVIFVPAPFA   83 (294)
T ss_dssp             --CCSSCTTC-CEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHHHH
T ss_pred             HHHHHhCCCC-EEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCEEEEccCHHHH
Confidence            3777887755 567789999999999999999999988999999765789999999999999974459999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCCCCCCcEEEEecChH
Q 019500          113 AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYIHKPGRIGIVSRSGT  191 (340)
Q Consensus       113 ~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~-~~~~~~~~~~~~~~G~valvSQSG~  191 (340)
                      ++++++|+++|++.+|++|+||++++.+++.+++ +++|++++||||+|++||. +++ +++|...++||+||||||||+
T Consensus        84 ~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A-~~~gi~viGPNc~Gii~~~~~~~-~~~~~~~~~~G~va~vSqSG~  161 (294)
T 2yv1_A           84 KDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYA-EDVGVKIIGPNTPGIASPKVGKL-GIIPMEVLKEGSVGMVSRSGT  161 (294)
T ss_dssp             HHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHH-HHHTCEEECSSCCEEEETTTEEE-ECCCGGGCCEEEEEEEESCSH
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH-HHcCCEEEcCCCceeeccCccee-eecccCCCCCCCEEEEECCHH
Confidence            9999999999999989999999999888888876 7899999999999999998 444 344555678999999999999


Q ss_pred             HHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEe
Q 019500          192 LTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIA  271 (340)
Q Consensus       192 l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvvlk~  271 (340)
                      +++++++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|+||+|++|++++++++|+++  ++||||+||+
T Consensus       162 l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~~g~~~~~~~~~~~~--~~KPVv~~k~  239 (294)
T 2yv1_A          162 LTYEIAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGEIGGGAEEEAAKFIEK--MKKPVIGYIA  239 (294)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEESSSSHHHHHHHHHTT--CSSCEEEEEE
T ss_pred             HHHHHHHHHHhCCCCeEEEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEeeCCCHHHHHHHHHHh--CCCCEEEEEe
Confidence            99999999999999999999999998778999999999999999999999999999988888888876  7999999999


Q ss_pred             CCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHHHHHHHHHHH
Q 019500          272 GLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK  334 (340)
Q Consensus       272 Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el~~~~~~~~~  334 (340)
                      ||+++.|+++||||         |+++++.|++++|+++|||+|++++++++||+|+++++++
T Consensus       240 G~~~~~g~~~sHtg---------al~~~~~g~~~~~~aa~~~aGv~~~~~~~el~~~~~~~~~  293 (294)
T 2yv1_A          240 GQSAPEGKRMGHAG---------AIVEKGKGTAESKMKALEEAGAYVAKNISDIPKLLAGILG  293 (294)
T ss_dssp             CC----------------------------CCHHHHHHHHHHHTCEECSSTTHHHHHHHHHHC
T ss_pred             cCCCCccccCCchh---------hhccCCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHHhc
Confidence            99995588899999         9987777999999999999999999999999999998874

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=100.00  E-value=6.9e-70  Score=517.66  Aligned_cols=285  Identities=65%  Similarity=1.057  Sum_probs=263.8

Q ss_pred             ccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        37 lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      +|.++.++|+|+|+||++|+.+++++.++|++++++|||+..|+++.|+|+|+|++|+++++++|++++|+|++.+++++
T Consensus         2 ~~~~~~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~~~~G~~vy~sl~el~~~~~~D~viI~tP~~~~~~~~   81 (288)
T 2nu8_A            2 ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSI   81 (288)
T ss_dssp             CSCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHH
T ss_pred             eecCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccceeCCeeccCCHHHHhhcCCCCEEEEecCHHHHHHHH
Confidence            56677899999999999999999999999999999999986556899999999999999744599999999999999999


Q ss_pred             HHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCCCCCCcEEEEecChHHHHH
Q 019500          117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYIHKPGRIGIVSRSGTLTYE  195 (340)
Q Consensus       117 ~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~-~~~~~~~~~~~~~~G~valvSQSG~l~~~  195 (340)
                      ++|+++|++.+|++|+||++++.+++.+.+ +++|++++||||+|++||. +++ +++|...++||+||+|||||+++++
T Consensus        82 ~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A-~~~gv~liGPNc~Gi~~p~~~~~-~~~~~~~~~~G~i~~vsqSG~l~~~  159 (288)
T 2nu8_A           82 LEAIDAGIKLIITITEGIPTLDMLTVKVKL-DEAGVRMIGPNTPGVITPGECKI-GIQPGHIHKPGKVGIVSRSGTLTYE  159 (288)
T ss_dssp             HHHHHTTCSEEEECCCCCCHHHHHHHHHHH-HHHTCEEECSSCCEEEETTTEEE-ESSCTTSCCEEEEEEEESCHHHHHH
T ss_pred             HHHHHCCCCEEEEECCCCCHHHHHHHHHHH-HHcCCEEEecCCcceecCCccee-EecccCCCCCCCEEEEECcHHHHHH
Confidence            999999999999999999998888888876 7899999999999999998 444 4566666889999999999999999


Q ss_pred             HHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEeCCCC
Q 019500          196 AVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA  275 (340)
Q Consensus       196 ~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvvlk~Grs~  275 (340)
                      +++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|+||+|++|++++++++|+++ +++||||++|+||++
T Consensus       160 ~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~l~~D~~t~~I~l~~E~~~~~~~~~~~~~~~-~~~KPVv~~k~G~~~  238 (288)
T 2nu8_A          160 AVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKE-HVTKPVVGYIAGVTA  238 (288)
T ss_dssp             HHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHHHHHHHHHHH-HCCSCEEEEEECTTC
T ss_pred             HHHHHHhcCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCCCHHHHHHHHHHh-cCCCCEEEEEeCCCC
Confidence            9999999999999999999998778999999999999999999999999999999999999998 589999999999999


Q ss_pred             CCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHHHHHHHHHH
Q 019500          276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF  333 (340)
Q Consensus       276 ~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el~~~~~~~~  333 (340)
                      +.|+++||||         |+++++.|++++|+++|||+|+++++|++||+|+++.+|
T Consensus       239 ~~g~~~~Htg---------a~~~~~~g~~~~~~aa~~~aGv~~~~~~~el~~~~~~~~  287 (288)
T 2nu8_A          239 PKGKRMGHAG---------AIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVL  287 (288)
T ss_dssp             CTTCCCSSTT---------CCCCTTCCCHHHHHHHHHHTTCEECSSGGGHHHHHHHHC
T ss_pred             cccccccchh---------hhhccCCccHHHHHHHHHHCCCeEeCCHHHHHHHHHHHh
Confidence            5488899999         998877899999999999999999999999999999765

>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*

Probab=100.00  E-value=1.7e-64  Score=488.53  Aligned_cols=283  Identities=29%  Similarity=0.477  Sum_probs=231.4

Q ss_pred             ccCcCCeEEEEeCCCCCcchHHHHHHHHcC-------CeEEEeeCCCCCC--ceec------CcccccCHHHhhccC-CC
Q 019500           37 VFVDKNTRVICQGITGKNGTFHTEQAIEYG-------TKMVGGVTPKKGG--TEHL------GLPVFNTVAEAKAET-KA  100 (340)
Q Consensus        37 lf~p~~iaViVvGasgk~G~~v~~~l~~~G-------~~vv~~VnP~~~g--~~i~------G~p~y~sl~dip~~~-~v  100 (340)
                      .|.+++++|+|.|++||    +.+++++++       .+++++|||+.+|  +++.      |+|+|+|++|+++++ ++
T Consensus         5 ~l~~~~tkviV~G~~Gk----~~~~ml~~~~~~~r~~~~vVagV~P~~~g~~~~v~~G~~~~Gvpvy~sv~ea~~~~p~~   80 (334)
T 3mwd_B            5 TLFSRHTKAIVWGMQTR----AVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILIPVFKNMADAMRKHPEV   80 (334)
T ss_dssp             CCCCTTCCEEEESCCHH----HHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEEEETTEEEEEEEESSHHHHHHHCTTC
T ss_pred             cccCCCCeEEEECCchH----HHHHHHHhcccccCCCceEEEEEcCCCCCccceEeccCccCCceeeCCHHHHhhcCCCC
Confidence            34567889999999866    456666664       6799999999864  4553      899999999998754 48


Q ss_pred             cEEEEecChhhHHHHHHHHHH-cCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCCCcccc--------
Q 019500          101 NASAIYVPPPFAAAAILEAME-AELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIG--------  171 (340)
Q Consensus       101 Dlavi~vp~~~v~~~v~ea~~-~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~~~~~~--------  171 (340)
                      |++|+|+|+..+.+.+.++++ +|++.++++|+||+|++++++.+++ +++|+|++||||+|++||+...++        
T Consensus        81 DlaVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a-~~~g~rliGPNc~Gii~p~~~~ig~~~~~~~a  159 (334)
T 3mwd_B           81 DVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKA-DQKGVTIIGPATVGGIKPGCFKIGNTGGMLDN  159 (334)
T ss_dssp             CEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHH-HHHTCEEECSSCCCEEETTTEECTTTTCSHHH
T ss_pred             cEEEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH-HHcCCEEEccCCccccCcchhhcccccccccc
Confidence            999999999999877766666 9999999999999998888888876 889999999999999999622111        


Q ss_pred             cCCCCCCCCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHH
Q 019500          172 IMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEE  251 (340)
Q Consensus       172 ~~~~~~~~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~  251 (340)
                      ++|...++||+||||||||++++++++|+.++|+|||++||+||+.+.|+++.|+|+||.+||+|++|+||+|..|.  .
T Consensus       160 ~~~~~~~~~G~vgivSqSG~l~~~i~~~~~~~g~G~S~~VsiGn~~~~d~~~~D~l~~~~~Dp~T~~I~l~gEi~g~--~  237 (334)
T 3mwd_B          160 ILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGT--E  237 (334)
T ss_dssp             HHHTTTTSCCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSS--H
T ss_pred             cccccCCCCCCEEEEeCchHHHHHHHHHHHhcCCCeEEEEECCCCccCCCCHHHHHHHHhcCCCCCEEEEEEecCCh--H
Confidence            23445689999999999999999999999999999999999999955699999999999999999999999887764  4


Q ss_pred             HHHHHHHHhC---CCCCEEEEEeCCCCCC---CCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHH
Q 019500          252 DAAALIKESG---TEKPIVAFIAGLTAPP---GRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKI  325 (340)
Q Consensus       252 ~~~~f~~a~r---~~KPVvvlk~Grs~~~---g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el  325 (340)
                      + ++|++.+|   ++||||+||+|||++.   ++++||||         |++.++.|++++|+++|||+|+++++|++||
T Consensus       238 e-~~~~~~~r~~~~~KPVV~~kaGrs~~~~g~~aa~sHtG---------alag~~~~~a~~~~aa~~~aGv~~v~~~~el  307 (334)
T 3mwd_B          238 E-YKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAG---------ACANQASETAVAKNQALKEAGVFVPRSFDEL  307 (334)
T ss_dssp             H-HHHHHHHHTTSCCSCEEEEEECTTCC-------------------------CGGGSHHHHHHHHHHTTCBCCSSGGGH
T ss_pred             H-HHHHHHHHhhcCCCCEEEEEcCCCcccccccccccchh---------hhccCCCccHHHHHHHHHHcCCeEcCCHHHH
Confidence            5 77887765   7999999999999973   44589999         9985444555599999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 019500          326 GAAMLEVFKQR  336 (340)
Q Consensus       326 ~~~~~~~~~~~  336 (340)
                      +|++++++++|
T Consensus       308 ~~~~~~~~~~l  318 (334)
T 3mwd_B          308 GEIIQSVYEDL  318 (334)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=100.00  E-value=4.8e-64  Score=505.06  Aligned_cols=270  Identities=22%  Similarity=0.341  Sum_probs=231.6

Q ss_pred             CcccccCcCCeEEEEeCCCCC---cchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           33 PAPAVFVDKNTRVICQGITGK---NGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        33 ~l~~lf~p~~iaViVvGasgk---~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      +|++||.|++++|+  |+|++   +|+.+.++|+++|...++||||++  ++++|+|||+|++|+|+  ++|+++|++|+
T Consensus         1 ~l~~l~~p~siAVv--Gas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~--~~i~G~~~y~sl~~lp~--~~Dlavi~vp~   74 (457)
T 2csu_A            1 MLDYFFNPKGIAVI--GASNDPKKLGYEVFKNLKEYKKGKVYPVNIKE--EEVQGVKAYKSVKDIPD--EIDLAIIVVPK   74 (457)
T ss_dssp             CCCTTTSCSEEEEE--TCCSCTTSHHHHHHHHHTTCCSSEEEEECSSC--SEETTEECBSSTTSCSS--CCSEEEECSCH
T ss_pred             ChhHhcCCCeEEEE--CcCCCCCchHHHHHHHHHHcCCCEEEEECCCC--CeECCEeccCCHHHcCC--CCCEEEEecCH
Confidence            47899999998766  99975   488999999998722677999997  89999999999999998  59999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhh------HHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCCCCCCc
Q 019500          110 PFAAAAILEAMEAELDLVVCITEGIPQHD------MVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYIHKPGR  182 (340)
Q Consensus       110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~------~~~l~~~aar~~girviGPNc~Gi~~p~-~~~~~~~~~~~~~~G~  182 (340)
                      +.+++++++|+++|+|.+|++|+||+|.+      .+++.+++ +++|++++||||+|++||. +++++|.|.. +. |+
T Consensus        75 ~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a-~~~g~~viGPnc~Gv~~~~~~~~~~~~~~~-~~-G~  151 (457)
T 2csu_A           75 RFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIA-HKYGMRIIGPNCVGIMNTHVDLNATFITVA-KK-GN  151 (457)
T ss_dssp             HHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHH-HHHTCEEECSSCCEEEEGGGTEEEESSCCC-EE-CS
T ss_pred             HHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHH-HHcCCEEEcCCcceEEccCCCceeeecCCC-CC-CC
Confidence            99999999999999999999999998743      44566665 8899999999999999999 8999998764 34 99


Q ss_pred             EEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-
Q 019500          183 IGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-  261 (340)
Q Consensus       183 valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-  261 (340)
                      ||||||||++++++++|+.++|+|||++||+||++  |+++.|+|+||.+||+|++|+||+|+    +.|+++|++++| 
T Consensus       152 v~~vsqSG~~~~~~~~~~~~~g~G~s~~vs~G~~~--~~~~~d~l~~~~~D~~t~~I~l~~E~----i~~~~~f~~~a~~  225 (457)
T 2csu_A          152 VAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMA--DVDFAELMEYLADTEEDKAIALYIEG----VRNGKKFMEVAKR  225 (457)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCEESEEEECTTCC--SSCHHHHHHHHTTCSSCCEEEEEESC----CSCHHHHHHHHHH
T ss_pred             EEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCCcC--CCCHHHHHHHHhcCCCCCEEEEEEec----CCCHHHHHHHHHH
Confidence            99999999999999999999999999999999998  99999999999999999999999998    457899999886 


Q ss_pred             --CCCCEEEEEeCCCCCCCCc--ccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHHHHHHHH
Q 019500          262 --TEKPIVAFIAGLTAPPGRR--MGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLE  331 (340)
Q Consensus       262 --~~KPVvvlk~Grs~~~g~~--~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el~~~~~~  331 (340)
                        ++||||++|+||+++ |++  +||||         +|+    |++++|+++|||+|++++++++|+.+..+.
T Consensus       226 ~~~~KPVv~~k~G~~~~-g~~aa~~Htg---------ala----g~~~~~~AafRqaGv~~v~~~~El~~~~~~  285 (457)
T 2csu_A          226 VTKKKPIIALKAGKSES-GARAASSHTG---------SLA----GSWKIYEAAFKQSGVLVANTIDEMLSMARA  285 (457)
T ss_dssp             HHHHSCEEEEECC--------------------------------CHHHHHHHHHHTTCEEESSHHHHHHHHTT
T ss_pred             hcCCCCEEEEEcCCCcc-ccchhhcccC---------ccC----CcHHHHHHHHHhCCCeEECCHHHHHHHHHH
Confidence              789999999999999 776  69999         998    999999999999999999999999998764

>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.4e-60  Score=502.70  Aligned_cols=286  Identities=30%  Similarity=0.478  Sum_probs=236.7

Q ss_pred             ccCcCCeEEEEeCCCCCcchHHHHHHHHcC-------CeEEEeeCCCCCC--cee------cCcccccCHHHhhccC-CC
Q 019500           37 VFVDKNTRVICQGITGKNGTFHTEQAIEYG-------TKMVGGVTPKKGG--TEH------LGLPVFNTVAEAKAET-KA  100 (340)
Q Consensus        37 lf~p~~iaViVvGasgk~G~~v~~~l~~~G-------~~vv~~VnP~~~g--~~i------~G~p~y~sl~dip~~~-~v  100 (340)
                      .|.+++++|+|.|++|+    +.++|+++|       .+++++|||+.+|  .++      .|+|||+|++|+|+++ ++
T Consensus       491 ~l~~~~trviV~G~tg~----~~~~ml~~~~~~~~~~~~vVa~V~P~~~g~~~~~~~G~~~~Gvp~y~sv~ea~~~~p~~  566 (829)
T 3pff_A          491 TLFSRHTKAIVWGMQTR----AVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILIPVFKNMADAMRKHPEV  566 (829)
T ss_dssp             CCCCTTCCEEEESCCHH----HHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEEEETTEEEEEEEESSHHHHHHHCTTC
T ss_pred             eeecCCCeEEEECCcHH----HHHHHHHhcccccCCCCcEEEEEcCCCCCccceEEecCCcCCcccCCcHHHHhhccCCC
Confidence            44577899999999865    678888876       4699999999864  234      4799999999998753 48


Q ss_pred             cEEEEecChhhHHHHHHHHHH-cCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCCCcccc--------
Q 019500          101 NASAIYVPPPFAAAAILEAME-AELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIG--------  171 (340)
Q Consensus       101 Dlavi~vp~~~v~~~v~ea~~-~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~~~~~~--------  171 (340)
                      |++||++|+..+++++++|++ +|++.+|++|+||+|.+++++.+++ +++|+|++||||+|++||+...++        
T Consensus       567 DlaVI~vP~~~v~~av~ea~~~~Gvk~~Viis~Gf~e~~~~~l~~~A-~~~g~rliGPNc~Gii~p~~~~ig~~~g~lna  645 (829)
T 3pff_A          567 DVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKA-DQKGVTIIGPATVGGIKPGCFKIGNTGGMLDN  645 (829)
T ss_dssp             CEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHH-HHHTCEEECSSCCCEEETTTEECTTTTCSHHH
T ss_pred             cEEEEeCCHHHHHHHHHHHHhhCCCCEEEEeCCCCCHHHHHHHHHHH-HHcCCEEEcCCCcccCcccccccccccccccc
Confidence            999999999999999999999 9999999999999999888888876 889999999999999999832233        


Q ss_pred             cCCCCCCCCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHH
Q 019500          172 IMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEE  251 (340)
Q Consensus       172 ~~~~~~~~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~  251 (340)
                      ++|...++||+||||||||++++++++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|+||+|..|..+.
T Consensus       646 ~~~~~~~~~G~VgiVSqSGal~~~i~~~~~~~g~G~S~~VsiGnd~~~d~~~~D~L~~l~~Dp~T~~Ivly~Ei~g~~f~  725 (829)
T 3pff_A          646 ILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEY  725 (829)
T ss_dssp             HHHTTTTSCCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHHH
T ss_pred             ccccccCCCCcEEEEechhHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCCHHHHHHHHhhCCCCCEEEEEEecCchHHH
Confidence            34555689999999999999999999999999999999999999976799999999999999999999999997555444


Q ss_pred             HHHHHHHHhCCCCCEEEEEeCCCCCC---CCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHHHHH
Q 019500          252 DAAALIKESGTEKPIVAFIAGLTAPP---GRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAA  328 (340)
Q Consensus       252 ~~~~f~~a~r~~KPVvvlk~Grs~~~---g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el~~~  328 (340)
                      ++.++++..+++||||++|+|||++.   ++++||||         |++.++.|++++|+++|||+|+++++|++||+++
T Consensus       726 ~aA~~~~~~~~~KPVVa~kaGrsa~~~~~~~~~sHtG---------Alag~~~~ta~~~~aa~r~aGvi~v~~~~el~~~  796 (829)
T 3pff_A          726 KICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAG---------ACANQASETAVAKNQALKEAGVFVPRSFDELGEI  796 (829)
T ss_dssp             HHHHHHHTTSCCSCEEEEEECSSTTC------------------------CGGGSHHHHHHHHHHTTCBCCSSGGGHHHH
T ss_pred             HHHHHHHhccCCCCEEEEEecCcCccccccccccccc---------ccccCCcccHHHHHHHHHHcCCeEcCCHHHHHHH
Confidence            44444443247899999999999993   56689999         9985555566799999999999999999999999


Q ss_pred             HHHHHHhc
Q 019500          329 MLEVFKQR  336 (340)
Q Consensus       329 ~~~~~~~~  336 (340)
                      ++.++++|
T Consensus       797 ~~~~~~~l  804 (829)
T 3pff_A          797 IQSVYEDL  804 (829)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988754

>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}

Probab=100.00  E-value=2.2e-47  Score=384.33  Aligned_cols=209  Identities=21%  Similarity=0.331  Sum_probs=184.4

Q ss_pred             Cccc---ccCHHHhhccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCC
Q 019500           84 GLPV---FNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCP  160 (340)
Q Consensus        84 G~p~---y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~  160 (340)
                      ++|+   |+++.++|+  .+|++||++|++.+++++++|+++|+| +||+|+||+.++++++.+++ +++|+|++|||| 
T Consensus        20 ~~Pv~~~~~~~~~~p~--~~DlavI~vPa~~v~~~v~e~~~~Gv~-~viis~Gf~~~~~~~l~~~A-~~~g~rliGPNc-   94 (480)
T 3dmy_A           20 ALTQVRRWDSACQKLP--DANLALISVAGEYAAELANQALDRNLN-VMMFSDNVTLEDEIQLKTRA-REKGLLVMGPDC-   94 (480)
T ss_dssp             CCEEESSHHHHHHHST--TCCEEEECSCHHHHHHHHHHHHHTTCE-EEECCCCCCHHHHHHHHHHH-HHTTCCEECSSC-
T ss_pred             CCcccchHHHHHhcCC--CCCEEEEecCHHHHHHHHHHHHhcCCC-EEEECCCCCHHHHHHHHHHH-HHcCCEEEecCc-
Confidence            5555   556666665  599999999999999999999999999 78999999988788888876 889999999999 


Q ss_pred             CcccCCCcccccCCCCCCCCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCC----CCCCCHHHHHHHhhcCCCc
Q 019500          161 GVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDP----FNGTNFVDCVTKFIADPQT  236 (340)
Q Consensus       161 Gi~~p~~~~~~~~~~~~~~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a----~~dv~~~d~l~~l~~Dp~T  236 (340)
                      |++|+.+++++|.+.  .++|+||||||||++++++++|+.++|+|||++||+||+.    +.|+++.|+|+||.+||+|
T Consensus        95 G~~~~~~~~~~f~~~--~~~G~vaivSqSGal~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T  172 (480)
T 3dmy_A           95 GTSMIAGTPLAFANV--MPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKS  172 (480)
T ss_dssp             CEEEETTEEEESCCC--CCEEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTC
T ss_pred             cccccCCccccccCC--CCCCCEEEEeccHHHHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCC
Confidence            888877777777654  5699999999999999999999999999999999999992    1399999999999999999


Q ss_pred             cEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcC
Q 019500          237 EGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAG  315 (340)
Q Consensus       237 ~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaG  315 (340)
                      ++|++|+|+..  +...++|++++| ++||||++|+||++.                         |        |||+|
T Consensus       173 ~~I~ly~E~~~--e~~~~~f~~~ar~~~KPVV~~k~Grs~~-------------------------g--------~r~~G  217 (480)
T 3dmy_A          173 EVLAFVSKPPA--EAVRLKIVNAMKATGKPTVALFLGYTPA-------------------------V--------ARDEN  217 (480)
T ss_dssp             CEEEEEESCCC--HHHHHHHHHHHHHHCSCEEEEETTCCCS-------------------------S--------SEETT
T ss_pred             CEEEEEEecCC--cHHHHHHHHHHHhCCCCEEEEEeCCCCc-------------------------c--------cccCC
Confidence            99999999742  334589999886 899999999999887                         4        78999


Q ss_pred             CeecCCHHHHHHHHHHHHH
Q 019500          316 VTVVESPAKIGAAMLEVFK  334 (340)
Q Consensus       316 vv~v~~~~el~~~~~~~~~  334 (340)
                      +++|+|++||+++++.+..
T Consensus       218 virv~~~~el~~~a~~l~~  236 (480)
T 3dmy_A          218 VWFASSLDEAARLACLLSR  236 (480)
T ss_dssp             EEEESSHHHHHHHHHHHHH
T ss_pred             EEEECCHHHHHHHHHHHhc
Confidence            9999999999999987543

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=99.92  E-value=1e-25  Score=192.23  Aligned_cols=123  Identities=20%  Similarity=0.292  Sum_probs=106.4

Q ss_pred             ccccc-CcCCeEEEEeCCC---CCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           34 APAVF-VDKNTRVICQGIT---GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        34 l~~lf-~p~~iaViVvGas---gk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      |++|| .|++++|+  |+|   +++|+.++++|++.||+ +++|||+..++++.|+|+|+|++|+|+  ++|++++++|+
T Consensus         6 l~~ll~~p~~vaVv--Gas~~~g~~G~~~~~~l~~~G~~-v~~vnp~~~~~~i~G~~~~~sl~el~~--~vDlavi~vp~   80 (140)
T 1iuk_A            6 LRAYLSQAKTIAVL--GAHKDPSRPAHYVPRYLREQGYR-VLPVNPRFQGEELFGEEAVASLLDLKE--PVDILDVFRPP   80 (140)
T ss_dssp             HHHHHHHCCEEEEE--TCCSSTTSHHHHHHHHHHHTTCE-EEEECGGGTTSEETTEECBSSGGGCCS--CCSEEEECSCH
T ss_pred             HHHHHcCCCEEEEE--CCCCCCCChHHHHHHHHHHCCCE-EEEeCCCcccCcCCCEEecCCHHHCCC--CCCEEEEEeCH
Confidence            88899 88887666  999   56788999999999998 779999943389999999999999998  59999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCC
Q 019500          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG  166 (340)
Q Consensus       110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~  166 (340)
                      +.+++++++|+++|++.+| +++|+.++   ++.+++ +++|++++||||+|+++|.
T Consensus        81 ~~~~~v~~~~~~~gi~~i~-~~~g~~~~---~~~~~a-~~~Gir~vgpnc~g~~~~~  132 (140)
T 1iuk_A           81 SALMDHLPEVLALRPGLVW-LQSGIRHP---EFEKAL-KEAGIPVVADRCLMVEHKR  132 (140)
T ss_dssp             HHHTTTHHHHHHHCCSCEE-ECTTCCCH---HHHHHH-HHTTCCEEESCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEE-EcCCcCHH---HHHHHH-HHcCCEEEcCCccceEChh
Confidence            9999999999999999865 67777643   344554 7899999999999999986

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=99.92  E-value=3e-25  Score=190.36  Aligned_cols=124  Identities=16%  Similarity=0.217  Sum_probs=107.8

Q ss_pred             CcccccC-cCCeEEEEeCCC---CCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecC
Q 019500           33 PAPAVFV-DKNTRVICQGIT---GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVP  108 (340)
Q Consensus        33 ~l~~lf~-p~~iaViVvGas---gk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp  108 (340)
                      +|++||. |++++|+  |+|   +++|+.++++|++.||+ +++|||+..|+++.|.++|+|++|+++  .+|++++++|
T Consensus         5 ~l~~ll~~p~~IavI--Gas~~~g~~G~~~~~~L~~~G~~-v~~vnp~~~g~~i~G~~~~~sl~el~~--~~Dlvii~vp   79 (145)
T 2duw_A            5 DIAGILTSTRTIALV--GASDKPDRPSYRVMKYLLDQGYH-VIPVSPKVAGKTLLGQQGYATLADVPE--KVDMVDVFRN   79 (145)
T ss_dssp             SHHHHHHHCCCEEEE--SCCSCTTSHHHHHHHHHHHHTCC-EEEECSSSTTSEETTEECCSSTTTCSS--CCSEEECCSC
T ss_pred             HHHHHHhCCCEEEEE--CcCCCCCChHHHHHHHHHHCCCE-EEEeCCcccccccCCeeccCCHHHcCC--CCCEEEEEeC
Confidence            4899996 9887766  998   57888999999999998 669999986678999999999999997  5999999999


Q ss_pred             hhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCC
Q 019500          109 PPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG  166 (340)
Q Consensus       109 ~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~  166 (340)
                      ++.+++++++|+++|++.+|+.++.+    .+++.+++ +++|++++||||+|+++|.
T Consensus        80 ~~~v~~v~~~~~~~g~~~i~i~~~~~----~~~l~~~a-~~~Gi~~igpnc~g~~~~~  132 (145)
T 2duw_A           80 SEAAWGVAQEAIAIGAKTLWLQLGVI----NEQAAVLA-REAGLSVVMDRCPAIELPR  132 (145)
T ss_dssp             STHHHHHHHHHHHHTCCEEECCTTCC----CHHHHHHH-HTTTCEEECSCCHHHHSTT
T ss_pred             HHHHHHHHHHHHHcCCCEEEEcCChH----HHHHHHHH-HHcCCEEEcCCeeeEEccc
Confidence            99999999999999999977665444    23455555 7899999999999999997

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=99.91  E-value=1e-24  Score=186.80  Aligned_cols=121  Identities=16%  Similarity=0.236  Sum_probs=105.1

Q ss_pred             cccccC-cCCeEEEEeCCC---CCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           34 APAVFV-DKNTRVICQGIT---GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        34 l~~lf~-p~~iaViVvGas---gk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      |+.||. |++++|+  |+|   +++|+.++++|++.||+ +++|||+.  +++.|+++|+|++|+|+  ++|++++++|+
T Consensus        15 l~~ll~~p~~iaVV--Gas~~~g~~G~~~~~~l~~~G~~-v~~Vnp~~--~~i~G~~~y~sl~~l~~--~vDlvvi~vp~   87 (144)
T 2d59_A           15 IREILTRYKKIALV--GASPKPERDANIVMKYLLEHGYD-VYPVNPKY--EEVLGRKCYPSVLDIPD--KIEVVDLFVKP   87 (144)
T ss_dssp             HHHHHHHCCEEEEE--TCCSCTTSHHHHHHHHHHHTTCE-EEEECTTC--SEETTEECBSSGGGCSS--CCSEEEECSCH
T ss_pred             HHHHHcCCCEEEEE--ccCCCCCchHHHHHHHHHHCCCE-EEEECCCC--CeECCeeccCCHHHcCC--CCCEEEEEeCH
Confidence            889995 8877655  998   57788999999999997 67999997  89999999999999997  59999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCC
Q 019500          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG  166 (340)
Q Consensus       110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~  166 (340)
                      +.+++++++|+++|++.+| +++|+.++   ++.+++ +++|++++||||+|+++|.
T Consensus        88 ~~~~~vv~~~~~~gi~~i~-~~~g~~~~---~l~~~a-~~~Gi~vvGpnc~gv~~~~  139 (144)
T 2d59_A           88 KLTMEYVEQAIKKGAKVVW-FQYNTYNR---EASKKA-DEAGLIIVANRCMMREHER  139 (144)
T ss_dssp             HHHHHHHHHHHHHTCSEEE-ECTTCCCH---HHHHHH-HHTTCEEEESCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEE-ECCCchHH---HHHHHH-HHcCCEEEcCCchhhcchh
Confidence            9999999999999999865 77887543   444554 7899999999999999874

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=99.91  E-value=1.6e-24  Score=184.46  Aligned_cols=120  Identities=18%  Similarity=0.213  Sum_probs=100.1

Q ss_pred             ccccCcCCeEEEEeCCC---CCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhh
Q 019500           35 PAVFVDKNTRVICQGIT---GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF  111 (340)
Q Consensus        35 ~~lf~p~~iaViVvGas---gk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~  111 (340)
                      .+||.|++++|+  |+|   |++|+.++++|++.||+ +++|||+.  +++.|+++|+|++|+++  ++|++++++|++.
T Consensus         9 ~~l~~p~~IavI--GaS~~~g~~G~~~~~~L~~~G~~-V~~vnp~~--~~i~G~~~~~s~~el~~--~vDlvii~vp~~~   81 (138)
T 1y81_A            9 SNSKEFRKIALV--GASKNPAKYGNIILKDLLSKGFE-VLPVNPNY--DEIEGLKCYRSVRELPK--DVDVIVFVVPPKV   81 (138)
T ss_dssp             -----CCEEEEE--TCCSCTTSHHHHHHHHHHHTTCE-EEEECTTC--SEETTEECBSSGGGSCT--TCCEEEECSCHHH
T ss_pred             ccccCCCeEEEE--eecCCCCCHHHHHHHHHHHCCCE-EEEeCCCC--CeECCeeecCCHHHhCC--CCCEEEEEeCHHH
Confidence            467888887666  998   56788999999999998 66999998  89999999999999998  5999999999999


Q ss_pred             HHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCC
Q 019500          112 AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG  166 (340)
Q Consensus       112 v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~  166 (340)
                      +++++++|+++|++.+|+.++++.    +++.+.+ +++|++++||||+|+++|.
T Consensus        82 v~~v~~~~~~~g~~~i~~~~~~~~----~~l~~~a-~~~Gi~~igpnc~g~~~~~  131 (138)
T 1y81_A           82 GLQVAKEAVEAGFKKLWFQPGAES----EEIRRFL-EKAGVEYSFGRCIMVETSN  131 (138)
T ss_dssp             HHHHHHHHHHTTCCEEEECTTSCC----HHHHHHH-HHHTCEEECSCCHHHHC--
T ss_pred             HHHHHHHHHHcCCCEEEEcCccHH----HHHHHHH-HHCCCEEEcCCcceEEccC
Confidence            999999999999999888877653    4455554 7889999999999999986

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=99.91  E-value=1.2e-24  Score=181.73  Aligned_cols=112  Identities=19%  Similarity=0.233  Sum_probs=97.2

Q ss_pred             CcCCeEEEEeCCCCC---cchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500           39 VDKNTRVICQGITGK---NGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        39 ~p~~iaViVvGasgk---~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~  115 (340)
                      .|++++|+  |+|.+   +|+.+.++|++.||+ ++||||++  ++++|++||+|++|+|+   +|++++++|++.++++
T Consensus         3 ~p~siAVV--GaS~~~~~~g~~v~~~L~~~g~~-V~pVnP~~--~~i~G~~~y~sl~dlp~---vDlavi~~p~~~v~~~   74 (122)
T 3ff4_A            3 AMKKTLIL--GATPETNRYAYLAAERLKSHGHE-FIPVGRKK--GEVLGKTIINERPVIEG---VDTVTLYINPQNQLSE   74 (122)
T ss_dssp             CCCCEEEE--TCCSCTTSHHHHHHHHHHHHTCC-EEEESSSC--SEETTEECBCSCCCCTT---CCEEEECSCHHHHGGG
T ss_pred             CCCEEEEE--ccCCCCCCHHHHHHHHHHHCCCe-EEEECCCC--CcCCCeeccCChHHCCC---CCEEEEEeCHHHHHHH
Confidence            47887766  99964   578889999999996 55999998  89999999999999995   9999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCccc
Q 019500          116 ILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK  164 (340)
Q Consensus       116 v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~  164 (340)
                      +++|+++|+|. +|+++||.+++   +.+.+ +++|||++| ||+|++-
T Consensus        75 v~e~~~~g~k~-v~~~~G~~~~e---~~~~a-~~~Girvv~-nC~gv~l  117 (122)
T 3ff4_A           75 YNYILSLKPKR-VIFNPGTENEE---LEEIL-SENGIEPVI-GCTLVML  117 (122)
T ss_dssp             HHHHHHHCCSE-EEECTTCCCHH---HHHHH-HHTTCEEEE-SCHHHHH
T ss_pred             HHHHHhcCCCE-EEECCCCChHH---HHHHH-HHcCCeEEC-CcCeEEe
Confidence            99999999997 56999996544   44444 789999997 9999873

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=99.36  E-value=2.9e-12  Score=121.23  Aligned_cols=120  Identities=13%  Similarity=0.110  Sum_probs=97.2

Q ss_pred             CcCCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCC---CCce--------ecCcccccCHHHhhccCCCcEEEEe
Q 019500           39 VDKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK---GGTE--------HLGLPVFNTVAEAKAETKANASAIY  106 (340)
Q Consensus        39 ~p~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~---~g~~--------i~G~p~y~sl~dip~~~~vDlavi~  106 (340)
                      .+++++|+|+|++|+||+.+++.+.+. ++++++.++++.   .|.+        -.|+|+|.+++++..  ++|++|+|
T Consensus        18 m~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~--~aDVvIDF   95 (288)
T 3ijp_A           18 GPGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFS--NTEGILDF   95 (288)
T ss_dssp             ---CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTT--SCSEEEEC
T ss_pred             ccCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhc--CCCEEEEc
Confidence            467899999999999999999988864 889998888653   1222        258899999999886  59999999


Q ss_pred             cChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCC-CCcc
Q 019500          107 VPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC-PGVI  163 (340)
Q Consensus       107 vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc-~Gi~  163 (340)
                      ++|+.+.+.++.|+++|++. |+.|+||++++.++|.+++ ++.+ -++.||. +|+.
T Consensus        96 T~p~a~~~~~~~~l~~Gv~v-ViGTTG~~~e~~~~L~~aa-~~~~-~~~a~N~SiGv~  150 (288)
T 3ijp_A           96 SQPQASVLYANYAAQKSLIH-IIGTTGFSKTEEAQIADFA-KYTT-IVKSGNMSLGVN  150 (288)
T ss_dssp             SCHHHHHHHHHHHHHHTCEE-EECCCCCCHHHHHHHHHHH-TTSE-EEECSCCCHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCE-EEECCCCCHHHHHHHHHHh-CcCC-EEEECCCcHHHH
Confidence            99999999999999999987 5689999988888888776 5544 3888885 5653

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=99.28  E-value=1.2e-11  Score=116.16  Aligned_cols=117  Identities=18%  Similarity=0.275  Sum_probs=95.5

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCC---CCce---e----cCcccccCHHHhhccCCCcEEEEecChh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK---GGTE---H----LGLPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~---~g~~---i----~G~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      +++|+|+|++|+||+.+++.+.+. ++++++.++++.   .|..   +    .|+++|.+++++.+  ++|++|+|++|+
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~--~~DVVIDfT~p~   84 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCA--EADYLIDFTLPE   84 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHH--HCSEEEECSCHH
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhc--CCCEEEEcCCHH
Confidence            589999999999999999988875 788998887653   1211   1    28899999999887  499999999999


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCC-CCcc
Q 019500          111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC-PGVI  163 (340)
Q Consensus       111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc-~Gi~  163 (340)
                      .+.+.++.|+++|++. |+.|+||++++.++|.+++ ++.+ .++.||. +|+.
T Consensus        85 a~~~~~~~al~~G~~v-VigTTG~s~~~~~~L~~aa-~~~~-vv~a~N~s~Gv~  135 (272)
T 4f3y_A           85 GTLVHLDAALRHDVKL-VIGTTGFSEPQKAQLRAAG-EKIA-LVFSANMSVGVN  135 (272)
T ss_dssp             HHHHHHHHHHHHTCEE-EECCCCCCHHHHHHHHHHT-TTSE-EEECSCCCHHHH
T ss_pred             HHHHHHHHHHHcCCCE-EEECCCCCHHHHHHHHHHh-ccCC-EEEECCCCHHHH
Confidence            9999999999999987 5689999988888888775 5544 3888885 5653

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=99.13  E-value=1.1e-10  Score=109.50  Aligned_cols=118  Identities=17%  Similarity=0.217  Sum_probs=92.8

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHH-cCCeEEEeeCCCCC---Cce--------ecCcccccCHHHhhccCCCcEEEEecC
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKG---GTE--------HLGLPVFNTVAEAKAETKANASAIYVP  108 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~-~G~~vv~~VnP~~~---g~~--------i~G~p~y~sl~dip~~~~vDlavi~vp  108 (340)
                      ++++|+|+|++|+||+.+++.+.+ .++++++.+++...   +..        -.|+++|.+++++.+  ++|++|+|++
T Consensus         4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~--~~DvVIDft~   81 (273)
T 1dih_A            4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKD--DFDVFIDFTR   81 (273)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTT--SCSEEEECSC
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhc--CCCEEEEcCC
Confidence            568999999999999999998775 47887766665431   111        236788888988775  5999999999


Q ss_pred             hhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccC-CCCcc
Q 019500          109 PPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN-CPGVI  163 (340)
Q Consensus       109 ~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPN-c~Gi~  163 (340)
                      |+.+.+.++.|+++|++. ++.|+|+++++.+++.+++ ++.+ .++.|| ++|+.
T Consensus        82 p~~~~~~~~~a~~~G~~v-VigTtG~~~e~~~~L~~~a-~~~~-vv~a~N~siGvn  134 (273)
T 1dih_A           82 PEGTLNHLAFCRQHGKGM-VIGTTGFDEAGKQAIRDAA-ADIA-IVFAANFSVGVN  134 (273)
T ss_dssp             HHHHHHHHHHHHHTTCEE-EECCCCCCHHHHHHHHHHT-TTSC-EEECSCCCHHHH
T ss_pred             hHHHHHHHHHHHhCCCCE-EEECCCCCHHHHHHHHHhc-CCCC-EEEEecCcHHHH
Confidence            999999999999999996 6689999988887787764 5554 577888 46653

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=99.13  E-value=1e-10  Score=108.15  Aligned_cols=111  Identities=17%  Similarity=0.221  Sum_probs=91.1

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAME  121 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~  121 (340)
                      +++|+|+|+ |+||+.+.+.+.+.+.++++.++++.  ..-.|+|+|.+++++.   ++|++|+|++|+.+.+.++  ++
T Consensus         3 MmkI~ViGa-GrMG~~i~~~l~~~~~eLva~~d~~~--~~~~gv~v~~dl~~l~---~~DVvIDft~p~a~~~~~~--l~   74 (243)
T 3qy9_A            3 SMKILLIGY-GAMNQRVARLAEEKGHEIVGVIENTP--KATTPYQQYQHIADVK---GADVAIDFSNPNLLFPLLD--ED   74 (243)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSC--C--CCSCBCSCTTTCT---TCSEEEECSCHHHHHHHHT--SC
T ss_pred             ceEEEEECc-CHHHHHHHHHHHhCCCEEEEEEecCc--cccCCCceeCCHHHHh---CCCEEEEeCChHHHHHHHH--Hh
Confidence            478999999 99999999999887448888889876  4567999999999987   3899999999999999987  88


Q ss_pred             cCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCC-CCcc
Q 019500          122 AELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC-PGVI  163 (340)
Q Consensus       122 ~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc-~Gi~  163 (340)
                      +|++. |+.|+||++++.+++.+++ ++.++ ++.||. +|+.
T Consensus        75 ~g~~v-VigTTG~s~e~~~~l~~aa-~~~~v-~~a~N~S~Gv~  114 (243)
T 3qy9_A           75 FHLPL-VVATTGEKEKLLNKLDELS-QNMPV-FFSANMSYGVH  114 (243)
T ss_dssp             CCCCE-EECCCSSHHHHHHHHHHHT-TTSEE-EECSSCCHHHH
T ss_pred             cCCce-EeCCCCCCHHHHHHHHHHH-hcCCE-EEECCccHHHH
Confidence            89987 5699999988888888775 55444 888885 5654

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=99.05  E-value=1.3e-09  Score=100.80  Aligned_cols=105  Identities=17%  Similarity=0.216  Sum_probs=84.6

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAME  121 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~  121 (340)
                      ++|+|+|++|+||+.+.+.+.+. ++++++.+++.            .+++++... ++|++|+|++|+.+.+.++.|++
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~------------~dl~~~~~~-~~DvvIDfT~p~a~~~~~~~a~~   67 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG------------DPLSLLTDG-NTEVVIDFTHPDVVMGNLEFLID   67 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT------------CCTHHHHHT-TCCEEEECSCTTTHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC------------CCHHHHhcc-CCcEEEEccChHHHHHHHHHHHH
Confidence            47888999999999999988865 89998888764            235565542 58999999999999999999999


Q ss_pred             cCCcEEEEecCCCChhhHHHHHHHHhccC-CcE-EEccCC-CCc
Q 019500          122 AELDLVVCITEGIPQHDMVRVKAALNNQS-KTR-LVGPNC-PGV  162 (340)
Q Consensus       122 ~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~-gir-viGPNc-~Gi  162 (340)
                      +|++. |+.|+||++++..++.+++ ++. ++. ++.||. +|+
T Consensus        68 ~g~~~-VigTTG~~~e~~~~l~~aa-~~~~~~~vv~a~N~siGv  109 (245)
T 1p9l_A           68 NGIHA-VVGTTGFTAERFQQVESWL-VAKPNTSVLIAPNFAIGA  109 (245)
T ss_dssp             TTCEE-EECCCCCCHHHHHHHHHHH-HTSTTCEEEECSCCCHHH
T ss_pred             cCCCE-EEcCCCCCHHHHHHHHHHH-HhCCCCCEEEECCccHHH
Confidence            99997 5689999998887787776 444 665 788883 554

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=98.99  E-value=4.1e-10  Score=102.09  Aligned_cols=109  Identities=13%  Similarity=0.176  Sum_probs=83.7

Q ss_pred             CCCCCCCCC--CCccccc-CcCCeEEEEeCCCCCcchHHHHHH--HHcCCeEEEe--eCCC-CCCc-eecCccccc--CH
Q 019500           23 QSRSFTTAP--PPAPAVF-VDKNTRVICQGITGKNGTFHTEQA--IEYGTKMVGG--VTPK-KGGT-EHLGLPVFN--TV   91 (340)
Q Consensus        23 ~~~~~~~~~--~~l~~lf-~p~~iaViVvGasgk~G~~v~~~l--~~~G~~vv~~--VnP~-~~g~-~i~G~p~y~--sl   91 (340)
                      +.-+|+...  ..+.++| ..+..+|+|+|+ |+.|+.+++.+  .+.||++++.  .||+ ..|. .+.|+|+|+  ++
T Consensus        62 ~g~GY~V~~L~~~i~~~Lg~~~~~~V~IvGa-G~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL  140 (212)
T 3keo_A           62 RGFGYDVKKLMNFFAEILNDHSTTNVMLVGC-GNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTI  140 (212)
T ss_dssp             TSSSEEHHHHHHHHHHHTTTTSCEEEEEECC-SHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGH
T ss_pred             CCCCEEHHHHHHHHHHHhCCCCCCEEEEECc-CHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHH
Confidence            344666553  0123444 456789999999 99999988863  3458888876  4566 6667 799999996  45


Q ss_pred             HHhhccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500           92 AEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus        92 ~dip~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      +++.+++++|.+++++|....+++++.|.+.|++++|.||+
T Consensus       141 ~~~v~~~~Id~vIIAvPs~~aq~v~d~lv~~GIk~I~nFap  181 (212)
T 3keo_A          141 NDHLIDSDIETAILTVPSTEAQEVADILVKAGIKGILSFSP  181 (212)
T ss_dssp             HHHC-CCSCCEEEECSCGGGHHHHHHHHHHHTCCEEEECSS
T ss_pred             HHHHHHcCCCEEEEecCchhHHHHHHHHHHcCCCEEEEcCC
Confidence            55555567999999999999999999999999999999998

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=98.78  E-value=4.2e-08  Score=93.16  Aligned_cols=116  Identities=15%  Similarity=0.105  Sum_probs=88.4

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc----eecCcccccCHHHhh--------ccCCCcEEEEecCh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT----EHLGLPVFNTVAEAK--------AETKANASAIYVPP  109 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~----~i~G~p~y~sl~dip--------~~~~vDlavi~vp~  109 (340)
                      +++|.|+|+.|.+|+.+++.+.+.+.++++.++++....    ...+.++|.+++++.        +..++|+++|++|+
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~   82 (312)
T 3o9z_A            3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPN   82 (312)
T ss_dssp             CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCG
T ss_pred             ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCc
Confidence            578889999788999999999988888888888765311    234778999999987        34479999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEE-EccC
Q 019500          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL-VGPN  158 (340)
Q Consensus       110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girv-iGPN  158 (340)
                      ..+.+.+.+|+++|.+.++=-.-..+.++.+++.+++ +++|+.+ ++.|
T Consensus        83 ~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a-~~~g~~~~v~~~  131 (312)
T 3o9z_A           83 HLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELE-ARTGRRVYTVLQ  131 (312)
T ss_dssp             GGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHH-HHHCCCEEECCG
T ss_pred             hhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHH-HHcCCEEEEEee
Confidence            9999999999999977532111134556777888776 6677654 4444

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=98.76  E-value=3.2e-08  Score=95.03  Aligned_cols=123  Identities=17%  Similarity=0.161  Sum_probs=85.3

Q ss_pred             cccccCc--CCeEEEEeCCCCCcchHHHHHHHH--------cCCeEEEeeCCCCCCc----eecCcc-cccCHHHhhccC
Q 019500           34 APAVFVD--KNTRVICQGITGKNGTFHTEQAIE--------YGTKMVGGVTPKKGGT----EHLGLP-VFNTVAEAKAET   98 (340)
Q Consensus        34 l~~lf~p--~~iaViVvGasgk~G~~v~~~l~~--------~G~~vv~~VnP~~~g~----~i~G~p-~y~sl~dip~~~   98 (340)
                      .+.++.+  +.++|.|+|+ |.+|+.+++.+..        .++++++.++++....    +-+|++ +|.|++++.+..
T Consensus        15 ~~~~~~~~MkkirvgiIG~-G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~   93 (393)
T 4fb5_A           15 TENLYFQSMKPLGIGLIGT-GYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADP   93 (393)
T ss_dssp             ---------CCCEEEEECC-SHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCT
T ss_pred             ccCccccCCCCccEEEEcC-CHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCC
Confidence            3445544  5689999999 9999988876543        2578888888765211    235664 899999998766


Q ss_pred             CCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500           99 KANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus        99 ~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      ++|+|+|++|+..+.+.+.+|+++|.+.++=-.-..+.++.+++.+++ +++|+. .+|-|
T Consensus        94 ~iDaV~IatP~~~H~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~~a-~~~g~~l~vg~~  153 (393)
T 4fb5_A           94 EVDVVSVTTPNQFHAEMAIAALEAGKHVWCEKPMAPAYADAERMLATA-ERSGKVAALGYN  153 (393)
T ss_dssp             TCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHH-HHSSSCEEECCG
T ss_pred             CCcEEEECCChHHHHHHHHHHHhcCCeEEEccCCcccHHHHHHhhhhH-HhcCCccccccc
Confidence            799999999999999999999999988633111245556777888776 666654 45544

>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3

Probab=98.75  E-value=3.4e-08  Score=90.16  Aligned_cols=103  Identities=14%  Similarity=0.116  Sum_probs=80.6

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHH
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM  120 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~  120 (340)
                      ..++-.|+|++||||+.+.+...+.++++++.+++..  .           +++ .  ++|++|+|+.|+.+.+.++.|.
T Consensus        11 ~~~~~~v~Ga~GrMG~~i~~~~~~~~~elv~~id~~~--~-----------~~l-~--~~DVvIDFT~P~a~~~~~~~~~   74 (228)
T 1vm6_A           11 HHMKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG--V-----------EEL-D--SPDVVIDFSSPEALPKTVDLCK   74 (228)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE--E-----------EEC-S--CCSEEEECSCGGGHHHHHHHHH
T ss_pred             ccceeEEEEecCHHHHHHHHHHhCCCCEEEEEEcCCC--c-----------ccc-c--CCCEEEECCCHHHHHHHHHHHH
Confidence            3567778899999999998866667999998888643  1           222 2  4899999999999999999999


Q ss_pred             HcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCC-CCc
Q 019500          121 EAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC-PGV  162 (340)
Q Consensus       121 ~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc-~Gi  162 (340)
                      +.|++. |+.|+||++++.+++.+++ ++ ---++.||. +|+
T Consensus        75 ~~g~~~-ViGTTG~~~~~~~~l~~~a-~~-~~vv~apNfSlGv  114 (228)
T 1vm6_A           75 KYRAGL-VLGTTALKEEHLQMLRELS-KE-VPVVQAYNFSIGI  114 (228)
T ss_dssp             HHTCEE-EECCCSCCHHHHHHHHHHT-TT-SEEEECSCCCHHH
T ss_pred             HcCCCE-EEeCCCCCHHHHHHHHHHH-hh-CCEEEeccccHHH
Confidence            999997 6699999998887777654 44 334778885 665

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=98.75  E-value=2.5e-08  Score=95.96  Aligned_cols=128  Identities=12%  Similarity=-0.011  Sum_probs=87.4

Q ss_pred             CCCCCCCCCCCcccccCcCCeEEEEeCCCCCcch-HHHHHHHHc-CCeEEEeeCCCCCC-c---eecCcccccCHHHhhc
Q 019500           23 QSRSFTTAPPPAPAVFVDKNTRVICQGITGKNGT-FHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKA   96 (340)
Q Consensus        23 ~~~~~~~~~~~l~~lf~p~~iaViVvGasgk~G~-~v~~~l~~~-G~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~   96 (340)
                      .+++|-++.  -..--..+.++|.|+|+ |++|+ .+++.+.+. ++++++.++++... +   +-.|++.|.+++++.+
T Consensus        10 ~~~~~~~~~--~~~~~~m~~~rigiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~   86 (350)
T 3rc1_A           10 HENLYFQGH--MENPANANPIRVGVIGC-ADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLE   86 (350)
T ss_dssp             ------------------CCEEEEEESC-CHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHT
T ss_pred             ccceeeecc--CCCCCCCCceEEEEEcC-cHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhc
Confidence            345555442  12222335689999999 99998 688888886 78888777776410 1   2358999999999987


Q ss_pred             cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEE
Q 019500           97 ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL  154 (340)
Q Consensus        97 ~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girv  154 (340)
                      ..++|+++|++|+..+.+.+.+|+++|.+.++=-.-..+.++.+++.+++ +++|+.+
T Consensus        87 ~~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a-~~~g~~~  143 (350)
T 3rc1_A           87 RDDVDAVYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVA-RERGLLL  143 (350)
T ss_dssp             CTTCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHH-HHTTCCE
T ss_pred             CCCCCEEEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHH-HHhCCEE
Confidence            55799999999999999999999999987533223356667788888776 6677654

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.74  E-value=4.1e-08  Score=89.27  Aligned_cols=112  Identities=15%  Similarity=0.199  Sum_probs=86.4

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHHcC
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAE  123 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~G  123 (340)
                      +|.++|+ |+||+.+++++.+.|+++++..|+....+.     .|.+++++.+ .++|++++++|++.+.+.+.+++++|
T Consensus         2 ~vgiIG~-G~mG~~~~~~l~~~g~~lv~v~d~~~~~~~-----~~~~~~~l~~-~~~DvVv~~~~~~~~~~~~~~~l~~G   74 (236)
T 2dc1_A            2 LVGLIGY-GAIGKFLAEWLERNGFEIAAILDVRGEHEK-----MVRGIDEFLQ-REMDVAVEAASQQAVKDYAEKILKAG   74 (236)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSCCCTT-----EESSHHHHTT-SCCSEEEECSCHHHHHHHHHHHHHTT
T ss_pred             EEEEECC-CHHHHHHHHHHhcCCCEEEEEEecCcchhh-----hcCCHHHHhc-CCCCEEEECCCHHHHHHHHHHHHHCC
Confidence            6778899 999999999988889998777776541111     7899999874 26999999999999999999999999


Q ss_pred             CcEEEEecCCCCh-hhH-HHHHHHHhccCCcE-EEccCCCCccc
Q 019500          124 LDLVVCITEGIPQ-HDM-VRVKAALNNQSKTR-LVGPNCPGVIK  164 (340)
Q Consensus       124 vk~vvi~t~Gf~e-~~~-~~l~~~aar~~gir-viGPNc~Gi~~  164 (340)
                      .+. ++.+++... .+. +++.+.+ +++|.. ++-+|+.|-+.
T Consensus        75 ~~v-v~~~~~~~~~~~~~~~l~~~a-~~~g~~~~i~~~~~g~~~  116 (236)
T 2dc1_A           75 IDL-IVLSTGAFADRDFLSRVREVC-RKTGRRVYIASGAIGGLD  116 (236)
T ss_dssp             CEE-EESCGGGGGSHHHHHHHHHHH-HHHCCCEEECCTTCSCHH
T ss_pred             CcE-EEECcccCChHHHHHHHHHHH-HhcCCeEEecCccccChH
Confidence            875 556776543 344 6676665 666776 67888777543

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=98.73  E-value=6.4e-08  Score=92.51  Aligned_cols=113  Identities=15%  Similarity=0.213  Sum_probs=88.3

Q ss_pred             CCeEEEEeCCCCCcch-HHHHHHHHc-CCeEEEeeCCCCCCceecCcccccCHHHhhcc-CCCcEEEEecChhhHHHHHH
Q 019500           41 KNTRVICQGITGKNGT-FHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAE-TKANASAIYVPPPFAAAAIL  117 (340)
Q Consensus        41 ~~iaViVvGasgk~G~-~v~~~l~~~-G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~-~~vDlavi~vp~~~v~~~v~  117 (340)
                      +.++|.|+|+ |++|+ .+++.+.+. ++++++.++++.   +..|+++|.+++++.+. .++|+++|++|+..+.+.+.
T Consensus        24 ~~~rvgiiG~-G~ig~~~~~~~l~~~~~~~lvav~d~~~---~~~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H~~~~~   99 (330)
T 4ew6_A           24 SPINLAIVGV-GKIVRDQHLPSIAKNANFKLVATASRHG---TVEGVNSYTTIEAMLDAEPSIDAVSLCMPPQYRYEAAY   99 (330)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHHHHCTTEEEEEEECSSC---CCTTSEEESSHHHHHHHCTTCCEEEECSCHHHHHHHHH
T ss_pred             CCceEEEEec-CHHHHHHHHHHHHhCCCeEEEEEEeCCh---hhcCCCccCCHHHHHhCCCCCCEEEEeCCcHHHHHHHH
Confidence            4589999999 99998 688888875 788888888875   35789999999999875 57999999999999999999


Q ss_pred             HHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          118 EAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       118 ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      +|+++|.+.++=-.-..+.++.+++.+++ +++|+. .++.|
T Consensus       100 ~al~aGkhVl~EKP~a~~~~e~~~l~~~a-~~~g~~~~v~~~  140 (330)
T 4ew6_A          100 KALVAGKHVFLEKPPGATLSEVADLEALA-NKQGASLFASWH  140 (330)
T ss_dssp             HHHHTTCEEEECSSSCSSHHHHHHHHHHH-HHHTCCEEECCG
T ss_pred             HHHHcCCcEEEeCCCCCCHHHHHHHHHHH-HhcCCeEEEEeh
Confidence            99999976533111245566777887776 566654 44433

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=98.71  E-value=6.4e-08  Score=92.87  Aligned_cols=117  Identities=16%  Similarity=0.198  Sum_probs=90.0

Q ss_pred             CcCCeEEEEeCCCCCcchHHHHHHHHc--CCeEEEeeCCCCCC-c---eecCcccccCHHHhhccCCCcEEEEecChhhH
Q 019500           39 VDKNTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFA  112 (340)
Q Consensus        39 ~p~~iaViVvGasgk~G~~v~~~l~~~--G~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v  112 (340)
                      ..++++|.|+|+ |++|+.+++.+.+.  ++++++.++++... +   +-.|+++|.+++++.+..++|++++++|+..+
T Consensus        10 ~~~~~rvgiiG~-G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   88 (354)
T 3q2i_A           10 TDRKIRFALVGC-GRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGLH   88 (354)
T ss_dssp             CSSCEEEEEECC-STTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGGH
T ss_pred             CCCcceEEEEcC-cHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHHH
Confidence            346789999999 99999999998886  78888888876411 1   23588999999999865579999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEecC-CCChhhHHHHHHHHhccCCcEE-EccC
Q 019500          113 AAAILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTRL-VGPN  158 (340)
Q Consensus       113 ~~~v~ea~~~Gvk~vvi~t~-Gf~e~~~~~l~~~aar~~girv-iGPN  158 (340)
                      .+.+.+|+++|.+. ++--+ ..+.++.+++.+++ +++|+.+ +|.+
T Consensus        89 ~~~~~~al~~gk~v-~~EKP~a~~~~~~~~l~~~a-~~~g~~~~v~~~  134 (354)
T 3q2i_A           89 PTQSIECSEAGFHV-MTEKPMATRWEDGLEMVKAA-DKAKKHLFVVKQ  134 (354)
T ss_dssp             HHHHHHHHHTTCEE-EECSSSCSSHHHHHHHHHHH-HHHTCCEEECCG
T ss_pred             HHHHHHHHHCCCCE-EEeCCCcCCHHHHHHHHHHH-HHhCCeEEEEEc
Confidence            99999999999765 33222 55667777887776 5666553 5544

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=98.69  E-value=5.7e-08  Score=92.78  Aligned_cols=115  Identities=17%  Similarity=0.199  Sum_probs=89.1

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCC-c---eecCcccccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~  115 (340)
                      ++++|.|+|+ |++|+.+++.+.+. ++++++.++++... +   +-.|.++|.+++++.+..++|++++++|+..+.+.
T Consensus         3 ~~~rvgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~   81 (344)
T 3euw_A            3 LTLRIALFGA-GRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVDL   81 (344)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHHH
T ss_pred             CceEEEEECC-cHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhHHH
Confidence            4578899999 99999999998886 77888777776411 1   13578899999999875579999999999999999


Q ss_pred             HHHHHHcCCcEEEEecC-CCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          116 ILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       116 v~ea~~~Gvk~vvi~t~-Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      +.+|+++|.+.++ --+ ..+.++.+++.+++ +++|+. .+|.|
T Consensus        82 ~~~al~~gk~v~~-EKP~~~~~~~~~~l~~~a-~~~g~~~~v~~~  124 (344)
T 3euw_A           82 ITRAVERGIPALC-EKPIDLDIEMVRACKEKI-GDGASKVMLGFN  124 (344)
T ss_dssp             HHHHHHTTCCEEE-CSCSCSCHHHHHHHHHHH-GGGGGGEEECCG
T ss_pred             HHHHHHcCCcEEE-ECCCCCCHHHHHHHHHHH-HhcCCeEEecch
Confidence            9999999987543 333 56667778888776 666754 44443

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=98.68  E-value=1.3e-07  Score=89.90  Aligned_cols=116  Identities=10%  Similarity=0.002  Sum_probs=88.2

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc----eecCcccccCHHHhhc---------cCCCcEEEEecC
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT----EHLGLPVFNTVAEAKA---------ETKANASAIYVP  108 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~----~i~G~p~y~sl~dip~---------~~~vDlavi~vp  108 (340)
                      +++|.|+|+.|.+|..+++.+.+.+.++++.++++....    ...+.++|.+++++.+         ..++|+++|++|
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP   82 (318)
T 3oa2_A            3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSP   82 (318)
T ss_dssp             CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSC
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCC
Confidence            578889999788999999999888888888887765211    2347889999999872         347999999999


Q ss_pred             hhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          109 PPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       109 ~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      +..+.+.+.+|+++|.+.++=-.-..+.++.+++.+++ +++|+. .+|.+
T Consensus        83 ~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a-~~~g~~~~v~~~  132 (318)
T 3oa2_A           83 NYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIE-RETDKRLYNILQ  132 (318)
T ss_dssp             GGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHH-HHHTCCEEECCG
T ss_pred             cHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHH-HHhCCEEEEEEh
Confidence            99999999999999987532111145566778888776 666765 45544

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=98.68  E-value=5.9e-08  Score=92.68  Aligned_cols=117  Identities=15%  Similarity=0.079  Sum_probs=85.6

Q ss_pred             cCCeEEEEeCCCCCcchHH-HHHHHHc-CCeEEEeeCCCCCC-c---eecCcc-cccCHHHhhccCCCcEEEEecChhhH
Q 019500           40 DKNTRVICQGITGKNGTFH-TEQAIEY-GTKMVGGVTPKKGG-T---EHLGLP-VFNTVAEAKAETKANASAIYVPPPFA  112 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v-~~~l~~~-G~~vv~~VnP~~~g-~---~i~G~p-~y~sl~dip~~~~vDlavi~vp~~~v  112 (340)
                      .+++||.|+|+ |++|+.+ ...+.+. ++++++.++++... +   +-+|+| +|.|++++.+..++|+|+|++|+..+
T Consensus        21 ~~mirigiIG~-G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~H   99 (350)
T 4had_A           21 QSMLRFGIIST-AKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQH   99 (350)
T ss_dssp             -CCEEEEEESC-CHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGGH
T ss_pred             cCccEEEEEcC-hHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCchh
Confidence            44789999999 8999764 5667665 77888888876410 1   235775 89999999876579999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          113 AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       113 ~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      .+.+.+|+++|.+.++=-.-..+.++.+++.+++ +++|+. .+|-|
T Consensus       100 ~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a-~~~~~~l~v~~~  145 (350)
T 4had_A          100 IEWSIKAADAGKHVVCEKPLALKAGDIDAVIAAR-DRNKVVVTEAYM  145 (350)
T ss_dssp             HHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHH-HHHTCCEEECCG
T ss_pred             HHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHH-HHcCCceeEeee
Confidence            9999999999987533111244556777787776 556644 45544

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=98.67  E-value=6.9e-08  Score=92.67  Aligned_cols=116  Identities=14%  Similarity=0.140  Sum_probs=89.6

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCC-c---eecCcccccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~  115 (340)
                      ++++|.|+|+ |++|+.+++.+.+. ++++++.++++... +   +-.|++.|.+++++.+..++|++++++|+..+.+.
T Consensus         4 ~~~~vgiiG~-G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~   82 (354)
T 3db2_A            4 NPVGVAAIGL-GRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAEV   82 (354)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHHH
T ss_pred             CcceEEEEcc-CHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHHHH
Confidence            4578899999 99999999999886 78888788876410 1   23588999999999864479999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          116 ILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       116 v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      +.+|+++|.+.++--.-..+.++.+++.+++ +++|+. .+|.|
T Consensus        83 ~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a-~~~~~~~~v~~~  125 (354)
T 3db2_A           83 IEQCARSGKHIYVEKPISVSLDHAQRIDQVI-KETGVKFLCGHS  125 (354)
T ss_dssp             HHHHHHTTCEEEEESSSCSSHHHHHHHHHHH-HHHCCCEEEECG
T ss_pred             HHHHHHcCCEEEEccCCCCCHHHHHHHHHHH-HHcCCeEEEeec
Confidence            9999999977544323366677788887776 566654 44544

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=98.67  E-value=4.7e-08  Score=93.83  Aligned_cols=114  Identities=11%  Similarity=0.034  Sum_probs=87.2

Q ss_pred             CeEEEEeCCCCCcch-HHHHHHHHc-CCeEEEeeCCCCCCcee------cCcccccCHHHhhccCCCcEEEEecChhhHH
Q 019500           42 NTRVICQGITGKNGT-FHTEQAIEY-GTKMVGGVTPKKGGTEH------LGLPVFNTVAEAKAETKANASAIYVPPPFAA  113 (340)
Q Consensus        42 ~iaViVvGasgk~G~-~v~~~l~~~-G~~vv~~VnP~~~g~~i------~G~p~y~sl~dip~~~~vDlavi~vp~~~v~  113 (340)
                      +++|.|+|+ |.+|+ .+.+.+.+. ++++++.++++. .+++      .|.++|.+++++.+..++|++++++|+..+.
T Consensus         2 ~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~-~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~   79 (349)
T 3i23_A            2 TVKMGFIGF-GKSANRYHLPYVMIRETLEVKTIFDLHV-NEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTHY   79 (349)
T ss_dssp             CEEEEEECC-SHHHHHTTHHHHTTCTTEEEEEEECTTC-CHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGHH
T ss_pred             eeEEEEEcc-CHHHHHHHHHHHhhCCCeEEEEEECCCH-HHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHHH
Confidence            468889999 89987 677777665 788888888873 2444      6889999999998765799999999999999


Q ss_pred             HHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          114 AAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       114 ~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      +.+.+|+++|.+.++--.-..+.++.+++.+++ +++|+. .+|.|
T Consensus        80 ~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a-~~~g~~~~v~~~  124 (349)
T 3i23_A           80 DLAKQAILAGKSVIVEKPFCDTLEHAEELFALG-QEKGVVVMPYQN  124 (349)
T ss_dssp             HHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHH-HHTTCCEEECCG
T ss_pred             HHHHHHHHcCCEEEEECCCcCCHHHHHHHHHHH-HHcCCeEEEEec
Confidence            999999999976533111245567777888776 677765 44444

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=98.66  E-value=1.1e-07  Score=91.83  Aligned_cols=116  Identities=18%  Similarity=0.256  Sum_probs=88.7

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCc---eecCcccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      ++++|.|+|+ |.+|+.+++.+.+. ++++++.++++....   .-.|+++|.+++++.+..++|+++|++|+..+.+.+
T Consensus         4 ~~~~vgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~   82 (359)
T 3e18_A            4 KKYQLVIVGY-GGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSHKELA   82 (359)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGHHHHH
T ss_pred             CcCcEEEECc-CHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence            4688999999 99999999988876 788887777764111   236889999999998755799999999999999999


Q ss_pred             HHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       117 ~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      .+|+++|.+.++--.-..+.++.+++.+++ +++|+. .+|-|
T Consensus        83 ~~al~aGkhVl~EKP~a~~~~ea~~l~~~a-~~~g~~~~v~~~  124 (359)
T 3e18_A           83 ISALEAGKHVVCEKPVTMTSEDLLAIMDVA-KRVNKHFMVHQN  124 (359)
T ss_dssp             HHHHHTTCEEEEESSCCSSHHHHHHHHHHH-HHHTCCEEEECG
T ss_pred             HHHHHCCCCEEeeCCCcCCHHHHHHHHHHH-HHhCCeEEEEee
Confidence            999999977543222255667777887776 566654 44544

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=98.66  E-value=2.5e-08  Score=90.27  Aligned_cols=109  Identities=14%  Similarity=0.158  Sum_probs=83.6

Q ss_pred             cCCCCCCCCCC--CCccccc-CcCCeEEEEeCCCCCcchHHHHHH--HHcCCeEEEee--CCCCCCceecCcccc--cCH
Q 019500           21 CGQSRSFTTAP--PPAPAVF-VDKNTRVICQGITGKNGTFHTEQA--IEYGTKMVGGV--TPKKGGTEHLGLPVF--NTV   91 (340)
Q Consensus        21 ~~~~~~~~~~~--~~l~~lf-~p~~iaViVvGasgk~G~~v~~~l--~~~G~~vv~~V--nP~~~g~~i~G~p~y--~sl   91 (340)
                      .++--+|+...  ..+.++| .++..+|+|+|+ |++|+.+++.+  .. |+++++.+  ||...|..+.|+|++  .++
T Consensus        56 G~~g~gY~v~~L~~~~~~~lg~~~~~rV~IIGa-G~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl  133 (211)
T 2dt5_A           56 GTRGVGYTVPVLKRELRHILGLNRKWGLCIVGM-GRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLL  133 (211)
T ss_dssp             CCTTTCEEHHHHHHHHHHHHTTTSCEEEEEECC-SHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGH
T ss_pred             cCCceeEEhHHHHHHHHHHhCcCCCCEEEEECc-cHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhH
Confidence            45566777531  0123333 456789999999 99999988852  23 78877765  576666788999975  467


Q ss_pred             HHhhccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500           92 AEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus        92 ~dip~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      +++.++ ++|.+++++|...+.++++.|.+.|++.+|++++
T Consensus       134 ~ell~~-~ID~ViIA~Ps~~~~ei~~~l~~aGi~~Ilnf~P  173 (211)
T 2dt5_A          134 PQRVPG-RIEIALLTVPREAAQKAADLLVAAGIKGILNFAP  173 (211)
T ss_dssp             HHHSTT-TCCEEEECSCHHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             HHHHHc-CCCEEEEeCCchhHHHHHHHHHHcCCCEEEECCc
Confidence            777766 7999999999999999999999999999998886

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=98.66  E-value=3.1e-07  Score=87.34  Aligned_cols=116  Identities=9%  Similarity=-0.000  Sum_probs=87.1

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCC-c---eecCcc-cccCHHHhhccCCCcEEEEecChhhHHH
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLP-VFNTVAEAKAETKANASAIYVPPPFAAA  114 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g-~---~i~G~p-~y~sl~dip~~~~vDlavi~vp~~~v~~  114 (340)
                      ++++|.|+|+ |++|+.+++.+.+. ++++++.++++... +   +-.|++ +|.+++++.+..++|++++++|+..+.+
T Consensus         4 ~~~rigiiG~-G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   82 (329)
T 3evn_A            4 SKVRYGVVST-AKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYK   82 (329)
T ss_dssp             -CEEEEEEBC-CTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGHHH
T ss_pred             CceEEEEEec-hHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHH
Confidence            4678999999 99999999888775 56777777765421 1   235776 8999999987557999999999999999


Q ss_pred             HHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          115 AILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       115 ~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      .+.+|+++|.+.++=-.-..+.++.+++.+++ +++|+. .+|.|
T Consensus        83 ~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a-~~~~~~~~v~~~  126 (329)
T 3evn_A           83 VAKAALLAGKHVLVEKPFTLTYDQANELFALA-ESCNLFLMEAQK  126 (329)
T ss_dssp             HHHHHHHTTCEEEEESSCCSSHHHHHHHHHHH-HHTTCCEEEECS
T ss_pred             HHHHHHHCCCeEEEccCCcCCHHHHHHHHHHH-HHcCCEEEEEEc
Confidence            99999999987543222355667778888776 667765 45554

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=98.64  E-value=2.4e-07  Score=88.24  Aligned_cols=116  Identities=8%  Similarity=-0.037  Sum_probs=89.0

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCC-c---eecCc-ccccCHHHhhccCCCcEEEEecChhhHHH
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGL-PVFNTVAEAKAETKANASAIYVPPPFAAA  114 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g-~---~i~G~-p~y~sl~dip~~~~vDlavi~vp~~~v~~  114 (340)
                      +.++|.|+|+ |++|+.+++.+.+. ++++++.++++... +   +-.|+ ++|.+++++.+..++|++++++|+..+.+
T Consensus         4 ~~~~igiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   82 (330)
T 3e9m_A            4 DKIRYGIMST-AQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHYS   82 (330)
T ss_dssp             CCEEEEECSC-CTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHHH
T ss_pred             CeEEEEEECc-hHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHHH
Confidence            4678999999 99999999999885 77888788876521 1   13577 58999999987557999999999999999


Q ss_pred             HHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          115 AILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       115 ~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      .+.+|+++|.+.++--.-..+.++.+++.+++ +++|+. .+|.|
T Consensus        83 ~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a-~~~g~~~~v~~~  126 (330)
T 3e9m_A           83 AAKLALSQGKPVLLEKPFTLNAAEAEELFAIA-QEQGVFLMEAQK  126 (330)
T ss_dssp             HHHHHHHTTCCEEECSSCCSSHHHHHHHHHHH-HHTTCCEEECCS
T ss_pred             HHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHH-HHcCCeEEEEEh
Confidence            99999999987643222356667778888776 667754 44444

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=98.64  E-value=1.4e-07  Score=91.03  Aligned_cols=116  Identities=13%  Similarity=0.017  Sum_probs=88.9

Q ss_pred             CCeEEEEeCCCCCcchH-HHHHHHHc-CCeEEEeeCCCCC--CceecCcccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           41 KNTRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKG--GTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~-v~~~l~~~-G~~vv~~VnP~~~--g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      ++++|.|+|+ |++|+. +.+.+.+. ++++++.++++..  .++..+.++|.+++++.+..++|+++|++|+..+.+.+
T Consensus         4 ~~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~   82 (362)
T 3fhl_A            4 EIIKTGLAAF-GMSGQVFHAPFISTNPHFELYKIVERSKELSKERYPQASIVRSFKELTEDPEIDLIVVNTPDNTHYEYA   82 (362)
T ss_dssp             CCEEEEESCC-SHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGTTCTTSEEESCSHHHHTCTTCCEEEECSCGGGHHHHH
T ss_pred             CceEEEEECC-CHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHHhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHH
Confidence            4689999999 899986 78888776 7888888777642  12344789999999998765799999999999999999


Q ss_pred             HHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       117 ~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      .+|+++|.+.++=-.-..+.++.+++.+++ +++|+. .+|.|
T Consensus        83 ~~al~aGkhVl~EKP~a~~~~ea~~l~~~a-~~~g~~~~v~~~  124 (362)
T 3fhl_A           83 GMALEAGKNVVVEKPFTSTTKQGEELIALA-KKKGLMLSVYQN  124 (362)
T ss_dssp             HHHHHTTCEEEEESSCCSSHHHHHHHHHHH-HHHTCCEEEECG
T ss_pred             HHHHHCCCeEEEecCCCCCHHHHHHHHHHH-HHcCCEEEEEec
Confidence            999999987543222255667788888776 566655 44554

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=98.64  E-value=7.9e-08  Score=92.27  Aligned_cols=116  Identities=14%  Similarity=0.104  Sum_probs=88.9

Q ss_pred             cCCeEEEEeCCCCCcchH-HHHHHHHc-CCeEEEeeCCCCC--CceecCcccccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500           40 DKNTRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKG--GTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~-v~~~l~~~-G~~vv~~VnP~~~--g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~  115 (340)
                      .+.++|.|+|+ |.+|+. +.+.+.+. ++++++.+++...  .....+.++|.+++++.+..++|+++|++|+..+.+.
T Consensus         5 ~~~~rvgiiG~-G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~   83 (352)
T 3kux_A            5 ADKIKVGLLGY-GYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPL   83 (352)
T ss_dssp             TCCEEEEEECC-SHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHTTCSSCCEESCHHHHHHCSSCCEEEECSCTTTHHHH
T ss_pred             cCCceEEEECC-CHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHH
Confidence            34689999999 999986 88888775 7888888777541  1234578999999999875579999999999999999


Q ss_pred             HHHHHHcCCcEEEEecC-CCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          116 ILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       116 v~ea~~~Gvk~vvi~t~-Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      +.+|+++|.+. ++=-+ ..+.++.+++.+++ +++|+. .+|.|
T Consensus        84 ~~~al~aGkhV-~~EKPla~~~~e~~~l~~~a-~~~g~~~~v~~~  126 (352)
T 3kux_A           84 AQSALAAGKHV-VVDKPFTVTLSQANALKEHA-DDAGLLLSVFHN  126 (352)
T ss_dssp             HHHHHHTTCEE-EECSSCCSCHHHHHHHHHHH-HHTTCCEEECCG
T ss_pred             HHHHHHCCCcE-EEECCCcCCHHHHHHHHHHH-HHcCCeEEEEee
Confidence            99999999765 33333 55667778888776 667765 44444

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=98.64  E-value=1e-07  Score=90.59  Aligned_cols=114  Identities=17%  Similarity=0.192  Sum_probs=87.2

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCC-c---eecCcccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      +++|.|+|+ |++|+.+++.+.+. ++++++.++++... +   +-.|++ |.+++++.+..++|++++++|+..+.+.+
T Consensus         3 ~~~vgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~~   80 (331)
T 4hkt_A            3 TVRFGLLGA-GRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHADLI   80 (331)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHHHHH
T ss_pred             ceEEEEECC-CHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHHHHH
Confidence            468889999 99999999999885 78888777876411 1   235888 99999998755699999999999999999


Q ss_pred             HHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       117 ~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      .+|+++|.+.++--....+.++.+++.+++ +++|+. .+|.+
T Consensus        81 ~~al~~gk~v~~EKP~~~~~~~~~~l~~~a-~~~g~~~~v~~~  122 (331)
T 4hkt_A           81 ERFARAGKAIFCEKPIDLDAERVRACLKVV-SDTKAKLMVGFN  122 (331)
T ss_dssp             HHHHHTTCEEEECSCSCSSHHHHHHHHHHH-HHTTCCEEECCG
T ss_pred             HHHHHcCCcEEEecCCCCCHHHHHHHHHHH-HHcCCeEEEccc
Confidence            999999976533222356677788888776 667755 44443

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=98.62  E-value=9.4e-08  Score=86.68  Aligned_cols=110  Identities=20%  Similarity=0.233  Sum_probs=75.2

Q ss_pred             cCCCCCCCCCC--CCccccc-CcCCeEEEEeCCCCCcchHHHHH--HHHcCCeEEEe--eCCCCCCceecCccccc--CH
Q 019500           21 CGQSRSFTTAP--PPAPAVF-VDKNTRVICQGITGKNGTFHTEQ--AIEYGTKMVGG--VTPKKGGTEHLGLPVFN--TV   91 (340)
Q Consensus        21 ~~~~~~~~~~~--~~l~~lf-~p~~iaViVvGasgk~G~~v~~~--l~~~G~~vv~~--VnP~~~g~~i~G~p~y~--sl   91 (340)
                      .++--+|+...  ..+.++| .++.++|+|+|+ |++|+.+++.  ....|+++++.  .||...|..+.|+|++.  ++
T Consensus        61 G~~g~gY~v~~L~~~~~~~lg~~~~~rV~IIGA-G~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl  139 (215)
T 2vt3_A           61 GKKGYGYNVDYLLSFFRKTLDQDEMTDVILIGV-GNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDL  139 (215)
T ss_dssp             C-----EEHHHHHHHHHHHHHHC---CEEEECC-SHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGH
T ss_pred             cCCcceEEhHHHHHHHHHHhCcCCCCEEEEEcc-CHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhH
Confidence            45556676531  0123333 345678999999 9999999984  33458887766  46766667899999875  56


Q ss_pred             HHhhccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCC
Q 019500           92 AEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEG  133 (340)
Q Consensus        92 ~dip~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~G  133 (340)
                      +++.++ . |++++++|...+.++++.|.+.|++.+|++++=
T Consensus       140 ~eli~~-~-D~ViIAvPs~~~~ei~~~l~~aGi~~Ilnf~P~  179 (215)
T 2vt3_A          140 EQHVKD-E-SVAILTVPAVAAQSITDRLVALGIKGILNFTPA  179 (215)
T ss_dssp             HHHCSS-C-CEEEECSCHHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             HHHHHh-C-CEEEEecCchhHHHHHHHHHHcCCCEEEEcCce
Confidence            676654 3 999999999999999999999999999999873

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=98.61  E-value=1.1e-07  Score=93.02  Aligned_cols=119  Identities=12%  Similarity=0.119  Sum_probs=87.9

Q ss_pred             CcCCeEEEEeCCCCCcchHHHHHHHHc---------CCeEEEeeCCCCCC-c---eecCc-ccccCHHHhhccCCCcEEE
Q 019500           39 VDKNTRVICQGITGKNGTFHTEQAIEY---------GTKMVGGVTPKKGG-T---EHLGL-PVFNTVAEAKAETKANASA  104 (340)
Q Consensus        39 ~p~~iaViVvGasgk~G~~v~~~l~~~---------G~~vv~~VnP~~~g-~---~i~G~-p~y~sl~dip~~~~vDlav  104 (340)
                      +.+.++|.|+|+ |.+|+.+++.+.+.         +.++++.++++... +   +-.|. ++|.+++++.+..++|+|+
T Consensus        23 Ms~klrvgiIG~-G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~  101 (412)
T 4gqa_A           23 MSARLNIGLIGS-GFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVD  101 (412)
T ss_dssp             --CEEEEEEECC-SHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEE
T ss_pred             ccccceEEEEcC-cHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEE
Confidence            345699999999 99999998887753         35788888876411 1   23455 5999999998766799999


Q ss_pred             EecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCc-EEEccCC
Q 019500          105 IYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKT-RLVGPNC  159 (340)
Q Consensus       105 i~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gi-rviGPNc  159 (340)
                      |++|+..+.+.+.+|+++|.+.++=-.-..+.++.++|.+++ +++|+ ..+|.|.
T Consensus       102 I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a-~~~g~~~~v~~~~  156 (412)
T 4gqa_A          102 ITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAA-RRAGVKTMVAFNN  156 (412)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHH-HHHTCCEEEECGG
T ss_pred             ECCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHH-HHhCCeeeeccce
Confidence            999999999999999999987643222245667778888776 55564 4556553

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=98.61  E-value=9.9e-08  Score=92.02  Aligned_cols=116  Identities=16%  Similarity=0.161  Sum_probs=88.7

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHH-H-cCCeEEEeeCCCCCC-c---eecC--cccccCHHHhhccCCCcEEEEecChhhH
Q 019500           41 KNTRVICQGITGKNGTFHTEQAI-E-YGTKMVGGVTPKKGG-T---EHLG--LPVFNTVAEAKAETKANASAIYVPPPFA  112 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~-~-~G~~vv~~VnP~~~g-~---~i~G--~p~y~sl~dip~~~~vDlavi~vp~~~v  112 (340)
                      +.++|.|+|+ |++|+.+++.+. + .++++++.++++... +   +-.|  .+.|.+++++.+..++|++++++|+..+
T Consensus        22 ~~~rvgiIG~-G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h  100 (357)
T 3ec7_A           22 MTLKAGIVGI-GMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAH  100 (357)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred             CeeeEEEECC-cHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence            4688999999 999999999988 4 378888788876521 1   1245  6899999999875579999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEE--EccC
Q 019500          113 AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL--VGPN  158 (340)
Q Consensus       113 ~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girv--iGPN  158 (340)
                      .+.+.+|+++|.+.++--.-..+.++.+++.+++ +++|+++  +|-+
T Consensus       101 ~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a-~~~g~~~~~v~~~  147 (357)
T 3ec7_A          101 ADVAVAALNANKYVFCEKPLAVTAADCQRVIEAE-QKNGKRMVQIGFM  147 (357)
T ss_dssp             HHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHH-HHHTSCCEEEECG
T ss_pred             HHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHH-HHhCCeEEEEeec
Confidence            9999999999976533222255667778888776 6777754  4444

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=98.61  E-value=2.7e-07  Score=86.72  Aligned_cols=114  Identities=11%  Similarity=0.044  Sum_probs=86.4

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHH----cCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIE----YGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~----~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      +.++|.|+|+ |.+|+.+++.+.+    .++++++..+++.. .+..|++ |.+++++.+..++|++++++|+..+.+.+
T Consensus         6 ~~~rvgiIG~-G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~-a~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~~~~   82 (294)
T 1lc0_A            6 GKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFVSRREL-GSLDEVR-QISLEDALRSQEIDVAYICSESSSHEDYI   82 (294)
T ss_dssp             CSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEECSSCC-CEETTEE-BCCHHHHHHCSSEEEEEECSCGGGHHHHH
T ss_pred             CcceEEEEEE-cHHHHHHHHHHhccccCCCEEEEEEECchHH-HHHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHHHHH
Confidence            4688999999 9999998888765    36778877776542 3456777 78999998655799999999999999999


Q ss_pred             HHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       117 ~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      .+|+++|.+.++=-.-..+.++.+++.+++ +++|+. .+|++
T Consensus        83 ~~al~aGkhVl~EKPla~~~~ea~~l~~~a-~~~g~~~~~~~~  124 (294)
T 1lc0_A           83 RQFLQAGKHVLVEYPMTLSFAAAQELWELA-AQKGRVLHEEHV  124 (294)
T ss_dssp             HHHHHTTCEEEEESCSCSCHHHHHHHHHHH-HHTTCCEEEECG
T ss_pred             HHHHHCCCcEEEeCCCCCCHHHHHHHHHHH-HHhCCEEEEEEh
Confidence            999999987643222234556777888776 666765 45554

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=98.60  E-value=1.2e-07  Score=92.35  Aligned_cols=114  Identities=21%  Similarity=0.367  Sum_probs=87.6

Q ss_pred             CeEEEEeCCCC-CcchHHHHHHHHc-CCeEEEeeCCCCCC-c---eecCcccccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500           42 NTRVICQGITG-KNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        42 ~iaViVvGasg-k~G~~v~~~l~~~-G~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~  115 (340)
                      .++|.|+|+ | .+|..+++.+.+. ++++++.++++... +   +-.|+++|.+++++.+..++|+++|++|+..+.+.
T Consensus         2 ~~rigiiG~-G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H~~~   80 (387)
T 3moi_A            2 KIRFGICGL-GFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFHCEH   80 (387)
T ss_dssp             CEEEEEECC-SHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGHHHH
T ss_pred             ceEEEEEeC-CHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHHHHH
Confidence            578889999 7 8898899988875 77888888876410 1   23589999999999875579999999999999999


Q ss_pred             HHHHHHcCCcEEEEecC-CCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          116 ILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       116 v~ea~~~Gvk~vvi~t~-Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      +.+|+++|.+.++ =-+ ..+.++.+++.+++ +++|+. .+|.|
T Consensus        81 ~~~al~aGk~Vl~-EKP~a~~~~e~~~l~~~a-~~~g~~~~v~~~  123 (387)
T 3moi_A           81 VVQASEQGLHIIV-EKPLTLSRDEADRMIEAV-ERAGVHLVVGTS  123 (387)
T ss_dssp             HHHHHHTTCEEEE-CSCCCSCHHHHHHHHHHH-HHHTCCEEECCC
T ss_pred             HHHHHHCCCceee-eCCccCCHHHHHHHHHHH-HHhCCeEEEEec
Confidence            9999999976533 222 45567777887776 566654 45554

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=98.60  E-value=1.4e-07  Score=91.15  Aligned_cols=116  Identities=14%  Similarity=0.089  Sum_probs=87.7

Q ss_pred             cCCeEEEEeCCCCCcchH-HHHHHHHc-CCeEEEeeCCCCC--CceecCcccccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500           40 DKNTRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKG--GTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~-v~~~l~~~-G~~vv~~VnP~~~--g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~  115 (340)
                      .+.++|.|+|+ |++|+. +.+.+.+. ++++++.++++..  .....+.++|.+++++.+..++|+++|++|+..+.+.
T Consensus         5 ~~~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~   83 (364)
T 3e82_A            5 NNTINIALIGY-GFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPL   83 (364)
T ss_dssp             --CEEEEEECC-SHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHHCTTSEEESCHHHHHTCTTCSEEEECSCGGGHHHH
T ss_pred             CCcceEEEECC-CHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCcEECCHHHHhcCCCCCEEEEeCChHHHHHH
Confidence            35688999999 999985 77878775 7888888887641  1234578999999999875579999999999999999


Q ss_pred             HHHHHHcCCcEEEEecC-CCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          116 ILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       116 v~ea~~~Gvk~vvi~t~-Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      +.+|+++|.+. ++=-+ ..+.++.+++.+++ +++|+. .+|.|
T Consensus        84 ~~~al~aGk~V-l~EKPla~~~~e~~~l~~~a-~~~g~~~~v~~~  126 (364)
T 3e82_A           84 ARLALNAGKHV-VVDKPFTLDMQEARELIALA-EEKQRLLSVFHN  126 (364)
T ss_dssp             HHHHHHTTCEE-EECSCSCSSHHHHHHHHHHH-HHTTCCEEECCC
T ss_pred             HHHHHHCCCcE-EEeCCCcCCHHHHHHHHHHH-HHhCCeEEEEee
Confidence            99999999775 32222 45667778888776 677765 34544

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=98.59  E-value=3.1e-07  Score=87.40  Aligned_cols=111  Identities=14%  Similarity=0.176  Sum_probs=81.7

Q ss_pred             CeEEEEeCCCCCcch-HHHHHHHHcCCeEEEeeCCCCCC-c----eecCcccccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500           42 NTRVICQGITGKNGT-FHTEQAIEYGTKMVGGVTPKKGG-T----EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        42 ~iaViVvGasgk~G~-~v~~~l~~~G~~vv~~VnP~~~g-~----~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~  115 (340)
                      +++|.|+|+ |++|. .+.+.+...++++++.++++... +    +..+.++|.+++++.+..++|+++|++|+..+.+.
T Consensus         4 ~~rvgiiG~-G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~   82 (336)
T 2p2s_A            4 KIRFAAIGL-AHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAEL   82 (336)
T ss_dssp             CCEEEEECC-SSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHHH
T ss_pred             ccEEEEECC-ChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHHH
Confidence            578888999 77774 46666766689988777765421 1    12378899999999875579999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEE
Q 019500          116 ILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL  154 (340)
Q Consensus       116 v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girv  154 (340)
                      +.+|+++|.+.++--.-..+.++.+++.+++ +++|+.+
T Consensus        83 ~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a-~~~g~~~  120 (336)
T 2p2s_A           83 ALRTLDAGKDFFTAKPPLTTLEQLDAVQRRV-AETGRKF  120 (336)
T ss_dssp             HHHHHHTTCEEEECSSCCSCHHHHHHHHHHH-HHHCCCE
T ss_pred             HHHHHHCCCcEEEeCCCCCCHHHHHHHHHHH-HHcCCEE
Confidence            9999999987533111234556777787776 6667554

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=98.59  E-value=1.4e-07  Score=90.25  Aligned_cols=118  Identities=13%  Similarity=0.131  Sum_probs=87.5

Q ss_pred             CcCCeEEEEeCCCC-CcchHHHHHHHHc--CCeEEEeeCCCCCC-c---eecCc-ccccCHHHhhccCCCcEEEEecChh
Q 019500           39 VDKNTRVICQGITG-KNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGL-PVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        39 ~p~~iaViVvGasg-k~G~~v~~~l~~~--G~~vv~~VnP~~~g-~---~i~G~-p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      .++.++|.|+|+ | .+|+.+++.+.+.  ++++++.++++... +   +-.|. ++|.+++++.+..++|+++|++|+.
T Consensus        15 ~~~~irvgiIG~-G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~   93 (340)
T 1zh8_A           15 PLRKIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVE   93 (340)
T ss_dssp             -CCCEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGG
T ss_pred             CCCceeEEEEec-CHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence            456789999999 7 7898899988875  57888888876410 1   12465 7899999998755799999999999


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      .+.+.+.+|+++|.+.++=-.-..+.++.+++.+++ +++|+. .+|-|
T Consensus        94 ~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a-~~~g~~~~v~~~  141 (340)
T 1zh8_A           94 LNLPFIEKALRKGVHVICEKPISTDVETGKKVVELS-EKSEKTVYIAEN  141 (340)
T ss_dssp             GHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHH-HHCSSCEEEECG
T ss_pred             HHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHH-HHcCCeEEEEec
Confidence            999999999999976533211245566777888776 667754 44433

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=98.58  E-value=2.8e-07  Score=87.08  Aligned_cols=110  Identities=15%  Similarity=0.138  Sum_probs=82.9

Q ss_pred             CCeEEEEeCCCCCcchH-HHHHHHHc-CCeEEEeeCCCCCCc----eecCcccccCHHHhhccCCCcEEEEecChhhHHH
Q 019500           41 KNTRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKGGT----EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA  114 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~-v~~~l~~~-G~~vv~~VnP~~~g~----~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~  114 (340)
                      +.++|.|+|+ |++|+. +++.+.+. ++++++.++++....    +..|+++|.+++++ .+ ++|++++++|+..+.+
T Consensus         4 ~~~~vgiiG~-G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l-~~-~~D~V~i~tp~~~h~~   80 (319)
T 1tlt_A            4 KKLRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSL-AA-SCDAVFVHSSTASHFD   80 (319)
T ss_dssp             -CEEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHH-HT-TCSEEEECSCTTHHHH
T ss_pred             CcceEEEECC-CHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHh-hc-CCCEEEEeCCchhHHH
Confidence            3578899999 999986 88888764 778877777665211    13478899999988 32 6999999999999999


Q ss_pred             HHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEE
Q 019500          115 AILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL  154 (340)
Q Consensus       115 ~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girv  154 (340)
                      .+.+|+++|.+.++--....+.++.+++.+++ ++.|+.+
T Consensus        81 ~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a-~~~g~~~  119 (319)
T 1tlt_A           81 VVSTLLNAGVHVCVDKPLAENLRDAERLVELA-ARKKLTL  119 (319)
T ss_dssp             HHHHHHHTTCEEEEESSSCSSHHHHHHHHHHH-HHTTCCE
T ss_pred             HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHH-HHcCCeE
Confidence            99999999987543223356667777888776 6777654

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=98.58  E-value=2.1e-07  Score=89.56  Aligned_cols=116  Identities=8%  Similarity=0.071  Sum_probs=86.4

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCC-c---eecC----cccccCHHHhhccCCCcEEEEecChh
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHLG----LPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g-~---~i~G----~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      .++++|.|+|+ |++|+.+++.+.+. ++++++.++++... +   +-.|    .++|.+++++.+..++|++++++|+.
T Consensus         4 ~~~~~vgiiG~-G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   82 (362)
T 1ydw_A            4 ETQIRIGVMGC-ADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTS   82 (362)
T ss_dssp             --CEEEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGG
T ss_pred             CCceEEEEECc-hHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChH
Confidence            34688999999 99999999988875 67888778876410 1   1234    47899999998644699999999999


Q ss_pred             hHHHHHHHHHHcCCcEEEEec-CCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          111 FAAAAILEAMEAELDLVVCIT-EGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       111 ~v~~~v~ea~~~Gvk~vvi~t-~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      .+.+.+.+|+++|.+.+ +-- -..+.++.+++.+++ +++|+. .+|.+
T Consensus        83 ~h~~~~~~al~aGk~V~-~EKP~a~~~~e~~~l~~~a-~~~g~~~~~~~~  130 (362)
T 1ydw_A           83 LHVEWAIKAAEKGKHIL-LEKPVAMNVTEFDKIVDAC-EANGVQIMDGTM  130 (362)
T ss_dssp             GHHHHHHHHHTTTCEEE-ECSSCSSSHHHHHHHHHHH-HTTTCCEEECCC
T ss_pred             HHHHHHHHHHHCCCeEE-EecCCcCCHHHHHHHHHHH-HHcCCEEEEEEe
Confidence            99999999999998653 322 245666778888776 677765 44544

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=98.58  E-value=2.5e-07  Score=88.03  Aligned_cols=116  Identities=20%  Similarity=0.360  Sum_probs=85.6

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHH-Hc-CCeEEEeeCCCCCC-c---eecCc-ccccCHHHhhccCCCcEEEEecChhhH
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAI-EY-GTKMVGGVTPKKGG-T---EHLGL-PVFNTVAEAKAETKANASAIYVPPPFA  112 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~-~~-G~~vv~~VnP~~~g-~---~i~G~-p~y~sl~dip~~~~vDlavi~vp~~~v  112 (340)
                      ++.++|.|+|+ |++|+.+++.+. +. ++++++.++++... +   +-.|. ++|.+++++.+..++|++++++|+..+
T Consensus         6 ~~~~~v~iiG~-G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h   84 (346)
T 3cea_A            6 RKPLRAAIIGL-GRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFH   84 (346)
T ss_dssp             CCCEEEEEECC-STTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGH
T ss_pred             CCcceEEEEcC-CHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhH
Confidence            34678999999 999999999988 54 77888777776410 1   12466 689999999864469999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEe-cCCCChhhHHHHHHHHhccC-CcEEE-ccC
Q 019500          113 AAAILEAMEAELDLVVCI-TEGIPQHDMVRVKAALNNQS-KTRLV-GPN  158 (340)
Q Consensus       113 ~~~v~ea~~~Gvk~vvi~-t~Gf~e~~~~~l~~~aar~~-girvi-GPN  158 (340)
                      .+.+.+|+++|.+. ++- ....+.++.+++.+++ +++ |+.+. |.|
T Consensus        85 ~~~~~~al~~G~~v-~~eKp~~~~~~~~~~l~~~a-~~~~~~~~~~~~~  131 (346)
T 3cea_A           85 PEMTIYAMNAGLNV-FCEKPLGLDFNEVDEMAKVI-KSHPNQIFQSGFM  131 (346)
T ss_dssp             HHHHHHHHHTTCEE-EECSCCCSCHHHHHHHHHHH-HTCTTSCEECCCG
T ss_pred             HHHHHHHHHCCCEE-EEcCCCCCCHHHHHHHHHHH-HhCCCCeEEEecc
Confidence            99999999999654 332 2244556677777776 667 76643 443

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=98.58  E-value=2.4e-07  Score=91.96  Aligned_cols=113  Identities=12%  Similarity=0.107  Sum_probs=86.5

Q ss_pred             CCeEEEEeCC---CCCcchHHHHHHHHc--CCeEEEeeCCCCCC-c---eecCcc---cccCHHHhhccCCCcEEEEecC
Q 019500           41 KNTRVICQGI---TGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLP---VFNTVAEAKAETKANASAIYVP  108 (340)
Q Consensus        41 ~~iaViVvGa---sgk~G~~v~~~l~~~--G~~vv~~VnP~~~g-~---~i~G~p---~y~sl~dip~~~~vDlavi~vp  108 (340)
                      +.++|.|+|+   .|.+|+.+++.+.+.  ++++++.++++... +   +..|++   +|.+++++.+..++|+++|++|
T Consensus        19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp   98 (438)
T 3btv_A           19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQ   98 (438)
T ss_dssp             CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSC
T ss_pred             CCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCC
Confidence            5689999999   488999999999886  67888888876410 1   134665   8999999987547999999999


Q ss_pred             hhhHHHHHHHHHHcCC-----cEEEEe-cCCCChhhHHHHHHHHhccCCcEE
Q 019500          109 PPFAAAAILEAMEAEL-----DLVVCI-TEGIPQHDMVRVKAALNNQSKTRL  154 (340)
Q Consensus       109 ~~~v~~~v~ea~~~Gv-----k~vvi~-t~Gf~e~~~~~l~~~aar~~girv  154 (340)
                      +..+.+.+.+|+++|.     |.+++= .-..+.++.+++.+++ +++|+.+
T Consensus        99 ~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a-~~~g~~~  149 (438)
T 3btv_A           99 VASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAA-AERGVQT  149 (438)
T ss_dssp             HHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHH-HTTTCEE
T ss_pred             cHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHH-HHcCCeE
Confidence            9999999999999992     443432 2345566778888776 6777653

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=98.56  E-value=1.3e-07  Score=90.43  Aligned_cols=115  Identities=17%  Similarity=0.191  Sum_probs=87.1

Q ss_pred             CeEEEEeCCCCCcchHHHHHHH-H-cCCeEEEeeCCCCCC-c---eecC--cccccCHHHhhccCCCcEEEEecChhhHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAI-E-YGTKMVGGVTPKKGG-T---EHLG--LPVFNTVAEAKAETKANASAIYVPPPFAA  113 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~-~-~G~~vv~~VnP~~~g-~---~i~G--~p~y~sl~dip~~~~vDlavi~vp~~~v~  113 (340)
                      +++|.|+|+ |.+|+.+++.+. + .++++++.++++... +   +-.|  .++|.+++++.+..++|++++++|+..+.
T Consensus         2 ~~rigiIG~-G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~   80 (344)
T 3mz0_A            2 SLRIGVIGT-GAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHE   80 (344)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGHH
T ss_pred             eEEEEEECc-cHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhHH
Confidence            367888999 999999999998 5 378888788876410 1   1246  67999999998755699999999999999


Q ss_pred             HHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEE--EccC
Q 019500          114 AAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL--VGPN  158 (340)
Q Consensus       114 ~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girv--iGPN  158 (340)
                      +.+.+|+++|.+.++--.-..+.++.+++.+++ +++|+++  +|-|
T Consensus        81 ~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a-~~~g~~~~~v~~~  126 (344)
T 3mz0_A           81 SSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEE-IKVGKRLVQVGFM  126 (344)
T ss_dssp             HHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHH-HHHSSCCEEECCG
T ss_pred             HHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHH-HHHCCEEEEEecc
Confidence            999999999976533112255667778888776 6777755  4444

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=98.55  E-value=2.9e-07  Score=86.91  Aligned_cols=117  Identities=16%  Similarity=0.137  Sum_probs=85.2

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCC-cee-cCcccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-TEH-LGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g-~~i-~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      ++.++|.|+|+ |++|+.+++.+.+. ++++++.++++... +.. ..+++|.+++++.+..++|++++++|+..+.+.+
T Consensus         8 ~~~~~igiIG~-G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~   86 (315)
T 3c1a_A            8 NSPVRLALIGA-GRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPGCVIESDWRSVVSAPEVEAVIIATPPATHAEIT   86 (315)
T ss_dssp             -CCEEEEEEEC-TTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTTCEEESSTHHHHTCTTCCEEEEESCGGGHHHHH
T ss_pred             CCcceEEEECC-cHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhhCcccCCHHHHhhCCCCCEEEEeCChHHHHHHH
Confidence            34678999999 99999999999885 67877777765310 111 1167899999998544699999999999999999


Q ss_pred             HHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       117 ~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      .+|+++|.+.++--....+.++.+++.+++ +++|+. .+|.+
T Consensus        87 ~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a-~~~g~~~~~~~~  128 (315)
T 3c1a_A           87 LAAIASGKAVLVEKPLTLDLAEAEAVAAAA-KATGVMVWVEHT  128 (315)
T ss_dssp             HHHHHTTCEEEEESSSCSCHHHHHHHHHHH-HHHCCCEEEECG
T ss_pred             HHHHHCCCcEEEcCCCcCCHHHHHHHHHHH-HHcCCEEEEeec
Confidence            999999976533212345666777787776 566654 55554

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=98.55  E-value=5.2e-07  Score=87.10  Aligned_cols=116  Identities=10%  Similarity=0.054  Sum_probs=85.0

Q ss_pred             CCeEEEEeCCCCCcch-HHHHHHHHcCCeEEEeeCCCCCC-c---eec-CcccccCHHHhhccCCCcEEEEecChhhHHH
Q 019500           41 KNTRVICQGITGKNGT-FHTEQAIEYGTKMVGGVTPKKGG-T---EHL-GLPVFNTVAEAKAETKANASAIYVPPPFAAA  114 (340)
Q Consensus        41 ~~iaViVvGasgk~G~-~v~~~l~~~G~~vv~~VnP~~~g-~---~i~-G~p~y~sl~dip~~~~vDlavi~vp~~~v~~  114 (340)
                      +.++|.|+|+ |.++. .+...+...++++++.+++.... +   +-. +.++|.+++++.+..++|+++|++|+..+.+
T Consensus        25 ~~irvgiiG~-G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~  103 (361)
T 3u3x_A           25 DELRFAAVGL-NHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAE  103 (361)
T ss_dssp             -CCEEEEECC-CSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHHHHH
T ss_pred             cCcEEEEECc-CHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHHHH
Confidence            3578899999 77774 45566666789999888876411 1   123 4689999999987657999999999999999


Q ss_pred             HHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          115 AILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       115 ~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      .+.+|+++|.+.++=-.-..+.++.+++.+++ +++|+. .+|-|
T Consensus       104 ~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a-~~~g~~l~v~~~  147 (361)
T 3u3x_A          104 LAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQ-AETGRIFSILYS  147 (361)
T ss_dssp             HHHHHHHTTCEEEEESCSCSSHHHHHHHHHHH-HTTCCCEEEECH
T ss_pred             HHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHH-HHcCCEEEEech
Confidence            99999999987543222245667778888876 677765 34443

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=98.55  E-value=1.6e-07  Score=89.77  Aligned_cols=115  Identities=15%  Similarity=0.209  Sum_probs=86.7

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCC-c---eecCcc-cccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLP-VFNTVAEAKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g-~---~i~G~p-~y~sl~dip~~~~vDlavi~vp~~~v~~~  115 (340)
                      +++|.|+|+ |++|+.+++.+.+. ++++++.++++... +   +-.|++ +|.+++++.+..++|++++++|+..+.+.
T Consensus         2 ~~rvgiIG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~   80 (344)
T 3ezy_A            2 SLRIGVIGL-GRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTHSEL   80 (344)
T ss_dssp             CEEEEEECC-SHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGHHHH
T ss_pred             eeEEEEEcC-CHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcchHHH
Confidence            367889999 99999999988875 77888777876411 1   235665 89999999875579999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          116 ILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       116 v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      +.+|+++|.+.++--.-..+.++.+++.+++ +++|+. .+|.|
T Consensus        81 ~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a-~~~g~~~~v~~~  123 (344)
T 3ezy_A           81 VIACAKAKKHVFCEKPLSLNLADVDRMIEET-KKADVILFTGFN  123 (344)
T ss_dssp             HHHHHHTTCEEEEESCSCSCHHHHHHHHHHH-HHHTCCEEEECG
T ss_pred             HHHHHhcCCeEEEECCCCCCHHHHHHHHHHH-HHhCCcEEEeec
Confidence            9999999977543222266677788888776 566654 44443

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=98.52  E-value=1.5e-07  Score=90.17  Aligned_cols=115  Identities=10%  Similarity=-0.054  Sum_probs=84.0

Q ss_pred             CeEEEEeCCCCCcchH-HHHHH-HH-cCCeEEEeeCCCCCC----ceecCcccccCHHHhhccCCCcEEEEecChhhHHH
Q 019500           42 NTRVICQGITGKNGTF-HTEQA-IE-YGTKMVGGVTPKKGG----TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA  114 (340)
Q Consensus        42 ~iaViVvGasgk~G~~-v~~~l-~~-~G~~vv~~VnP~~~g----~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~  114 (340)
                      +++|.|+|+ |++|+. +.+++ .+ .++++++.+++....    .+..|.++|.|++++.+..++|++++++|+..+.+
T Consensus         2 ~~rvgiiG~-G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   80 (345)
T 3f4l_A            2 VINCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFE   80 (345)
T ss_dssp             CEEEEEECC-SHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGHHH
T ss_pred             ceEEEEEec-CHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHHHH
Confidence            478889999 999974 77733 43 378888888775421    13457899999999987556999999999999999


Q ss_pred             HHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          115 AILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       115 ~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      .+.+|+++|.+.++--.-..+.++.+++.+++ +++|+. .+|.|
T Consensus        81 ~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a-~~~g~~~~v~~~  124 (345)
T 3f4l_A           81 YAKRALEAGKNVLVEKPFTPTLAQAKELFALA-KSKGLTVTPYQN  124 (345)
T ss_dssp             HHHHHHHTTCEEEECSSSCSSHHHHHHHHHHH-HHHTCCEEECCG
T ss_pred             HHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHH-HHcCCeEEEEec
Confidence            99999999976532111245566777787776 566655 44444

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=98.52  E-value=1.8e-07  Score=87.90  Aligned_cols=109  Identities=12%  Similarity=0.068  Sum_probs=83.4

Q ss_pred             CeEEEEeCCCCCcchH-HHHHHHHc-CCeEEEeeCCCCCC-c---eecCcccccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500           42 NTRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        42 ~iaViVvGasgk~G~~-v~~~l~~~-G~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~  115 (340)
                      +++|.|+|+ |++|+. +.+.+.+. ++++++.++++... +   +-.|++.|.+++++.+  ++|++++++|+..+.+.
T Consensus         6 ~~~igiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~--~~D~V~i~tp~~~h~~~   82 (308)
T 3uuw_A            6 NIKMGMIGL-GSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAK--KCDCIFLHSSTETHYEI   82 (308)
T ss_dssp             CCEEEEECC-SHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHT--TCSEEEECCCGGGHHHH
T ss_pred             cCcEEEEec-CHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHh--cCCEEEEeCCcHhHHHH
Confidence            468888899 999986 78888774 78888788876510 1   2358888999999997  69999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEE
Q 019500          116 ILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL  154 (340)
Q Consensus       116 v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girv  154 (340)
                      +.+|+++|.+.++=-....+.++.+++.+++ +++|+.+
T Consensus        83 ~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a-~~~g~~~  120 (308)
T 3uuw_A           83 IKILLNLGVHVYVDKPLASTVSQGEELIELS-TKKNLNL  120 (308)
T ss_dssp             HHHHHHTTCEEEECSSSSSSHHHHHHHHHHH-HHHTCCE
T ss_pred             HHHHHHCCCcEEEcCCCCCCHHHHHHHHHHH-HHcCCEE
Confidence            9999999987432112345667777787776 5666543

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=98.51  E-value=5.2e-07  Score=85.38  Aligned_cols=113  Identities=12%  Similarity=0.100  Sum_probs=83.5

Q ss_pred             eEEEEeCCCCCcchHH-HHHHHHcCCeEEEeeCCCCCC-c---eecCcc-cccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           43 TRVICQGITGKNGTFH-TEQAIEYGTKMVGGVTPKKGG-T---EHLGLP-VFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        43 iaViVvGasgk~G~~v-~~~l~~~G~~vv~~VnP~~~g-~---~i~G~p-~y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      ++|.|+|+ |++|+.+ .+.+.+.++++++.++++... +   +-.|.+ +|.+++++.+..++|++++++|+..+.+.+
T Consensus         1 ~~vgiiG~-G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~   79 (332)
T 2glx_A            1 NRWGLIGA-STIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQT   79 (332)
T ss_dssp             CEEEEESC-CHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHHH
T ss_pred             CeEEEEcc-cHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHHHH
Confidence            36788899 9999987 777777778888777876410 1   124775 899999997644699999999999999999


Q ss_pred             HHHHHcCCcEEEEec-CCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          117 LEAMEAELDLVVCIT-EGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       117 ~ea~~~Gvk~vvi~t-~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      .+|+++|.+. ++-. ...+.++.+++.+++ +++|+. .+|++
T Consensus        80 ~~al~~Gk~v-~~ekP~~~~~~~~~~l~~~a-~~~g~~~~~~~~  121 (332)
T 2glx_A           80 LAAIRAGKHV-LCEKPLAMTLEDAREMVVAA-REAGVVLGTNHH  121 (332)
T ss_dssp             HHHHHTTCEE-EECSSSCSSHHHHHHHHHHH-HHHTCCEEECCC
T ss_pred             HHHHHCCCeE-EEeCCCcCCHHHHHHHHHHH-HHcCCEEEEeeh
Confidence            9999999765 3322 244566777787776 566655 45554

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=98.50  E-value=2.8e-07  Score=88.82  Aligned_cols=116  Identities=13%  Similarity=0.106  Sum_probs=87.5

Q ss_pred             CCeEEEEeCCCCCcchH-HHHHHHHc-CCeEEEeeCCCCC--CceecCcccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           41 KNTRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKG--GTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~-v~~~l~~~-G~~vv~~VnP~~~--g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      +.++|.|+|+ |++|+. +.+.+.+. ++++++.+++...  .++..+.++|.+++++.+..++|+++|++|+..+.+.+
T Consensus         4 ~~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~   82 (358)
T 3gdo_A            4 DTIKVGILGY-GLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDFPDAEVVHELEEITNDPAIELVIVTTPSGLHYEHT   82 (358)
T ss_dssp             TCEEEEEECC-SHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHHHCTTSEEESSTHHHHTCTTCCEEEECSCTTTHHHHH
T ss_pred             CcceEEEEcc-CHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence            4688999999 999985 77777765 7888888887641  01345789999999998755799999999999999999


Q ss_pred             HHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       117 ~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      .+|+++|.+.++=-.-..+.++.+++.+++ +++|+. .+|.|
T Consensus        83 ~~al~aGkhVl~EKPla~~~~e~~~l~~~a-~~~g~~~~v~~~  124 (358)
T 3gdo_A           83 MACIQAGKHVVMEKPMTATAEEGETLKRAA-DEKGVLLSVYHN  124 (358)
T ss_dssp             HHHHHTTCEEEEESSCCSSHHHHHHHHHHH-HHHTCCEEEECG
T ss_pred             HHHHHcCCeEEEecCCcCCHHHHHHHHHHH-HHcCCeEEEeee
Confidence            999999976533211245667777888776 566654 44544

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=98.50  E-value=3.3e-07  Score=87.21  Aligned_cols=115  Identities=10%  Similarity=0.071  Sum_probs=85.2

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcC---CeEEEeeCCCCCC-c---eecCcc-cccCHHHhhccCCCcEEEEecChhhHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYG---TKMVGGVTPKKGG-T---EHLGLP-VFNTVAEAKAETKANASAIYVPPPFAA  113 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G---~~vv~~VnP~~~g-~---~i~G~p-~y~sl~dip~~~~vDlavi~vp~~~v~  113 (340)
                      +++|.|+|+ |++|+.+++.+.+.+   +++++..+++... +   +-.|+| +|.+++++.+..++|+++|++|+..+.
T Consensus         2 ~~rigiiG~-G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~   80 (334)
T 3ohs_X            2 ALRWGIVSV-GLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHK   80 (334)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGHH
T ss_pred             ccEEEEECc-hHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHH
Confidence            368888998 999999998887653   5788777876410 1   235774 899999998755799999999999999


Q ss_pred             HHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          114 AAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       114 ~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      +.+.+|+++|.+.++=-.-..+.++.+++.+++ +++|+. .+|.+
T Consensus        81 ~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a-~~~~~~~~v~~~  125 (334)
T 3ohs_X           81 AAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEA-RSRGLFLMEAIW  125 (334)
T ss_dssp             HHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHH-HHTTCCEEEECG
T ss_pred             HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHH-HHhCCEEEEEEh
Confidence            999999999976533222245567778888776 666754 34433

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=98.50  E-value=2.8e-07  Score=88.93  Aligned_cols=116  Identities=17%  Similarity=0.149  Sum_probs=85.2

Q ss_pred             CCeEEEEeCCCCCcchH-HHHHHHHc-CCeEEEeeCCCCCC-----ceecCcccccCHHHhhccCCCcEEEEecChhhHH
Q 019500           41 KNTRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKGG-----TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAA  113 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~-v~~~l~~~-G~~vv~~VnP~~~g-----~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~  113 (340)
                      +.++|.|+|+ |++|.. +++.+.+. ++++++.++++...     ++..+.++|.+++++.+..++|+++|++|+..+.
T Consensus         4 ~~~rigiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~   82 (359)
T 3m2t_A            4 SLIKVGLVGI-GAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLHF   82 (359)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHHH
T ss_pred             CcceEEEECC-CHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHHH
Confidence            4578999999 888875 77888775 77888777775410     1234678999999998755799999999999999


Q ss_pred             HHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          114 AAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       114 ~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      +.+.+|+++|.+.++=-.-..+.++.+++.+++ +++|+. .+|-|
T Consensus        83 ~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a-~~~g~~~~v~~~  127 (359)
T 3m2t_A           83 EMGLLAMSKGVNVFVEKPPCATLEELETLIDAA-RRSDVVSGVGMN  127 (359)
T ss_dssp             HHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHH-HHHTCCEEECCH
T ss_pred             HHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHH-HHcCCEEEEEec
Confidence            999999999987533111245556777777776 556654 44433

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=98.49  E-value=1.6e-07  Score=91.74  Aligned_cols=111  Identities=12%  Similarity=0.221  Sum_probs=84.3

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHc--CCeEEEeeCCCCCC-c---eecCcccccCHHHhhccCCCcEEEEecChhhH--
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFA--  112 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~--G~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v--  112 (340)
                      +.+||+|+|+ | +|+.+++.+.+.  ++++++.++++... +   +-.|+|+|.|++++.+  ++|+++|++|+..+  
T Consensus         6 ~~~rv~VvG~-G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~--~~D~v~i~~p~~~h~~   81 (372)
T 4gmf_A            6 PKQRVLIVGA-K-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITG--MPDIACIVVRSTVAGG   81 (372)
T ss_dssp             -CEEEEEECS-T-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCS--CCSEEEECCC--CTTS
T ss_pred             CCCEEEEEeh-H-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhc--CCCEEEEECCCcccch
Confidence            4689999998 6 799988888764  68899888887521 1   2469999999999997  59999999999877  


Q ss_pred             --HHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          113 --AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       113 --~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                        .+++++|+++|++.++ ==+ ++.+|.+++.+++ +++|+. .+|-+
T Consensus        82 ~~~~~a~~al~aGkhVl~-EKP-l~~~ea~~l~~~A-~~~g~~~~v~~~  127 (372)
T 4gmf_A           82 AGTQLARHFLARGVHVIQ-EHP-LHPDDISSLQTLA-QEQGCCYWINTF  127 (372)
T ss_dssp             HHHHHHHHHHHTTCEEEE-ESC-CCHHHHHHHHHHH-HHHTCCEEEECS
T ss_pred             hHHHHHHHHHHcCCcEEE-ecC-CCHHHHHHHHHHH-HHcCCEEEEcCc
Confidence              7899999999998643 222 5667778888776 677765 55544

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=98.45  E-value=3.2e-07  Score=86.80  Aligned_cols=111  Identities=13%  Similarity=0.110  Sum_probs=77.0

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCceecCccc--ccCHHHhhccCCCcEEEEecChhhHHHHHH
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPV--FNTVAEAKAETKANASAIYVPPPFAAAAIL  117 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~i~G~p~--y~sl~dip~~~~vDlavi~vp~~~v~~~v~  117 (340)
                      ++++|.|+|+ |++|+.+++.+.+. ++++++.++++....+..|++.  |.++.+.   .++|++++++|+..+.+.+.
T Consensus         8 ~~irv~IIG~-G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~~g~~~~~~~~l~~~---~~~DvViiatp~~~h~~~~~   83 (304)
T 3bio_A            8 KKIRAAIVGY-GNIGRYALQALREAPDFEIAGIVRRNPAEVPFELQPFRVVSDIEQL---ESVDVALVCSPSREVERTAL   83 (304)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECC-------CCTTSCEESSGGGS---SSCCEEEECSCHHHHHHHHH
T ss_pred             CCCEEEEECC-hHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHcCCCcCCHHHHHhC---CCCCEEEECCCchhhHHHHH
Confidence            3578999999 99999999988874 7788766665432112267662  4455554   25999999999999999999


Q ss_pred             HHHHcCCcEEEEecC--CCChhhHHHHHHHHhccCCcE-EEcc
Q 019500          118 EAMEAELDLVVCITE--GIPQHDMVRVKAALNNQSKTR-LVGP  157 (340)
Q Consensus       118 ea~~~Gvk~vvi~t~--Gf~e~~~~~l~~~aar~~gir-viGP  157 (340)
                      +|+++|++.+ +-.+  +...++.+++.+.+ ++.|+. ++|.
T Consensus        84 ~al~aG~~Vi-~ekP~~a~~~~~~~~l~~~a-~~~g~~~~v~~  124 (304)
T 3bio_A           84 EILKKGICTA-DSFDIHDGILALRRSLGDAA-GKSGAAAVIAS  124 (304)
T ss_dssp             HHHTTTCEEE-ECCCCGGGHHHHHHHHHHHH-HHHTCEEECSC
T ss_pred             HHHHcCCeEE-ECCCCCCCCHHHHHHHHHHH-HhCCCEEEEeC
Confidence            9999998764 3332  44455667777766 566643 5553

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=98.45  E-value=3.2e-07  Score=87.41  Aligned_cols=112  Identities=12%  Similarity=0.030  Sum_probs=83.8

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCcee-cCcccccCHHHhhccCCCcEEEEecChhhHHHHHHH
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEH-LGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~i-~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e  118 (340)
                      ++++|+|+|+ |++|+.+++.+.+. ++++++.++++.. ..+ .|+++|.+++++..  ++|++++++|+..+.+.+..
T Consensus         2 ~~irV~IiG~-G~mG~~~~~~l~~~~~~elvav~d~~~~-~~~~~gv~~~~d~~~ll~--~~DvViiatp~~~h~~~~~~   77 (320)
T 1f06_A            2 TNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRAT-LDTKTPVFDVADVDKHAD--DVDVLFLCMGSATDIPEQAP   77 (320)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSC-CSSSSCEEEGGGGGGTTT--TCSEEEECSCTTTHHHHHHH
T ss_pred             CCCEEEEEee-cHHHHHHHHHHhcCCCCEEEEEEcCCHH-HhhcCCCceeCCHHHHhc--CCCEEEEcCCcHHHHHHHHH
Confidence            3578999998 99999999998876 6788877776632 122 47888999999873  69999999999999999999


Q ss_pred             HHHcCCcEEEEecC-CCChhhH-HHHHHHHhccCC-cEEEccC
Q 019500          119 AMEAELDLVVCITE-GIPQHDM-VRVKAALNNQSK-TRLVGPN  158 (340)
Q Consensus       119 a~~~Gvk~vvi~t~-Gf~e~~~-~~l~~~aar~~g-irviGPN  158 (340)
                      |+++|++.++ -++ +.+.++. +++.+++ ++++ +.+++.+
T Consensus        78 al~aG~~Vv~-ekp~~~~~~~~~~~l~~~a-~~~~~v~v~~~~  118 (320)
T 1f06_A           78 KFAQFACTVD-TYDNHRDIPRHRQVMNEAA-TAAGNVALVSTG  118 (320)
T ss_dssp             HHTTTSEEEC-CCCCGGGHHHHHHHHHHHH-HHHTCEEECSCS
T ss_pred             HHHCCCEEEE-CCCCcCCHHHHHHHHHHHH-HhCCCEEEEecC
Confidence            9999987643 343 4555555 6777766 4555 5566554

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=98.44  E-value=7.1e-07  Score=87.17  Aligned_cols=116  Identities=16%  Similarity=0.102  Sum_probs=85.0

Q ss_pred             CCeEEEEeCCCCC---cchHHHHHHHHc-CCeEEE-eeCCCCCC-c---eecCc---ccccCHHHhhcc-----CCCcEE
Q 019500           41 KNTRVICQGITGK---NGTFHTEQAIEY-GTKMVG-GVTPKKGG-T---EHLGL---PVFNTVAEAKAE-----TKANAS  103 (340)
Q Consensus        41 ~~iaViVvGasgk---~G~~v~~~l~~~-G~~vv~-~VnP~~~g-~---~i~G~---p~y~sl~dip~~-----~~vDla  103 (340)
                      +.++|.|+|+ |+   +|+.+...+... ++++++ .+++.... +   +-.|+   ++|.|++++.+.     .++|++
T Consensus        11 ~~~rvgiiG~-G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V   89 (398)
T 3dty_A           11 QPIRWAMVGG-GSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAV   89 (398)
T ss_dssp             SCEEEEEEEC-CTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEE
T ss_pred             CcceEEEEcC-CccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEE
Confidence            4688999999 87   999999888776 478886 45765410 1   23577   699999999763     359999


Q ss_pred             EEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          104 AIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       104 vi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      +|++|+..+.+.+.+|+++|.+.++=-.-..+.++.+++.+++ +++|+. .+|-|
T Consensus        90 ~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a-~~~g~~~~v~~~  144 (398)
T 3dty_A           90 SIATPNGTHYSITKAALEAGLHVVCEKPLCFTVEQAENLRELS-HKHNRIVGVTYG  144 (398)
T ss_dssp             EEESCGGGHHHHHHHHHHTTCEEEECSCSCSCHHHHHHHHHHH-HHTTCCEEECCG
T ss_pred             EECCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHH-HHcCCeEEEEec
Confidence            9999999999999999999986532111245566777888776 667755 44544

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=98.43  E-value=8.6e-07  Score=89.12  Aligned_cols=117  Identities=13%  Similarity=0.085  Sum_probs=87.1

Q ss_pred             CCeEEEEeCCC---CCcchHHHHHHHHc--CCeEEEeeCCCCCC-c---eecCcc---cccCHHHhhccCCCcEEEEecC
Q 019500           41 KNTRVICQGIT---GKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLP---VFNTVAEAKAETKANASAIYVP  108 (340)
Q Consensus        41 ~~iaViVvGas---gk~G~~v~~~l~~~--G~~vv~~VnP~~~g-~---~i~G~p---~y~sl~dip~~~~vDlavi~vp  108 (340)
                      +.++|.|+|++   |.+|+.+++.+.+.  ++++++.+++.... +   +-.|++   +|.+++++.+..++|+|+|++|
T Consensus        38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp  117 (479)
T 2nvw_A           38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK  117 (479)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred             CcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCC
Confidence            45899999995   77888899988875  77888888876410 1   234665   9999999986557999999999


Q ss_pred             hhhHHHHHHHHHHcCC-----cEEEEecC-CCChhhHHHHHHHHhccCC-cE-EEccC
Q 019500          109 PPFAAAAILEAMEAEL-----DLVVCITE-GIPQHDMVRVKAALNNQSK-TR-LVGPN  158 (340)
Q Consensus       109 ~~~v~~~v~ea~~~Gv-----k~vvi~t~-Gf~e~~~~~l~~~aar~~g-ir-viGPN  158 (340)
                      +..+.+.+.+|+++|.     |.+++=-+ ..+.++.+++.+++ +++| +. .+|.|
T Consensus       118 ~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a-~~~g~~~~~v~~~  174 (479)
T 2nvw_A          118 VPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSIS-QQRANLQTIICLQ  174 (479)
T ss_dssp             HHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHH-HTCTTCEEEEECG
T ss_pred             cHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHH-HHcCCeEEEEEec
Confidence            9999999999999993     44443222 34556777888776 6777 55 44444

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=98.41  E-value=5.9e-07  Score=89.02  Aligned_cols=116  Identities=16%  Similarity=0.220  Sum_probs=86.0

Q ss_pred             cCCeEEEEeCCCCCcch-HHHHHHHHc-CCeEEEeeCCCCCC-c---eecCcc-----cccCHHHhhccCCCcEEEEecC
Q 019500           40 DKNTRVICQGITGKNGT-FHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLP-----VFNTVAEAKAETKANASAIYVP  108 (340)
Q Consensus        40 p~~iaViVvGasgk~G~-~v~~~l~~~-G~~vv~~VnP~~~g-~---~i~G~p-----~y~sl~dip~~~~vDlavi~vp  108 (340)
                      .+.++|.|+|+ |++|+ .+++.+.+. ++++++.++++... +   +..|++     +|.+++++.+..++|+++|++|
T Consensus        81 ~~~irigiIG~-G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp  159 (433)
T 1h6d_A           81 DRRFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILP  159 (433)
T ss_dssp             CCCEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSC
T ss_pred             CCceEEEEECC-cHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCC
Confidence            35689999999 99996 788888775 67888788876410 1   124654     7999999987556999999999


Q ss_pred             hhhHHHHHHHHHHcCCcEEEEec-CCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          109 PPFAAAAILEAMEAELDLVVCIT-EGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       109 ~~~v~~~v~ea~~~Gvk~vvi~t-~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      +..+.+.+.+|+++|.+. ++=- ...+.++.+++.+++ +++|+. .+|.|
T Consensus       160 ~~~h~~~~~~al~aGk~V-l~EKPla~~~~e~~~l~~~a-~~~g~~~~v~~~  209 (433)
T 1h6d_A          160 NSLHAEFAIRAFKAGKHV-MCEKPMATSVADCQRMIDAA-KAANKKLMIGYR  209 (433)
T ss_dssp             GGGHHHHHHHHHHTTCEE-EECSSCCSSHHHHHHHHHHH-HHHTCCEEECCG
T ss_pred             chhHHHHHHHHHHCCCcE-EEcCCCCCCHHHHHHHHHHH-HHhCCeEEEEec
Confidence            999999999999999864 3322 245566777787776 566654 45544

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=98.40  E-value=8.9e-07  Score=87.18  Aligned_cols=117  Identities=21%  Similarity=0.216  Sum_probs=85.5

Q ss_pred             CCeEEEEeCCCCC---cchHHHHHHHHc-CCeEEE-eeCCCCCC-c---eecCc---ccccCHHHhhcc-----CCCcEE
Q 019500           41 KNTRVICQGITGK---NGTFHTEQAIEY-GTKMVG-GVTPKKGG-T---EHLGL---PVFNTVAEAKAE-----TKANAS  103 (340)
Q Consensus        41 ~~iaViVvGasgk---~G~~v~~~l~~~-G~~vv~-~VnP~~~g-~---~i~G~---p~y~sl~dip~~-----~~vDla  103 (340)
                      +.++|.|+|+ |+   +|+.+...+... ++++++ .+++.... +   +-.|+   ++|.+++++.+.     .++|+|
T Consensus        36 ~~~rvgiiG~-G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V  114 (417)
T 3v5n_A           36 KRIRLGMVGG-GSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAV  114 (417)
T ss_dssp             CCEEEEEESC-C--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEE
T ss_pred             CcceEEEEcC-CCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEE
Confidence            4689999999 87   898888887776 478876 56765410 1   23577   599999999864     469999


Q ss_pred             EEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccCC
Q 019500          104 AIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPNC  159 (340)
Q Consensus       104 vi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPNc  159 (340)
                      +|++|+..+.+.+.+|+++|.+.++=-.-..+.++.+++.+++ +++|+. .+|-|.
T Consensus       115 ~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a-~~~g~~~~v~~~~  170 (417)
T 3v5n_A          115 AIVTPNHVHYAAAKEFLKRGIHVICDKPLTSTLADAKKLKKAA-DESDALFVLTHNY  170 (417)
T ss_dssp             EECSCTTSHHHHHHHHHTTTCEEEEESSSCSSHHHHHHHHHHH-HHCSSCEEEECGG
T ss_pred             EECCCcHHHHHHHHHHHhCCCeEEEECCCcCCHHHHHHHHHHH-HHcCCEEEEEecc
Confidence            9999999999999999999987533222245667777887776 566654 555553

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=98.39  E-value=6.6e-07  Score=85.71  Aligned_cols=116  Identities=14%  Similarity=0.050  Sum_probs=82.4

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc--------CCeEEEeeCCCCCC-c---eecCc-ccccCHHHhhccCCCcEEEEecC
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY--------GTKMVGGVTPKKGG-T---EHLGL-PVFNTVAEAKAETKANASAIYVP  108 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~--------G~~vv~~VnP~~~g-~---~i~G~-p~y~sl~dip~~~~vDlavi~vp  108 (340)
                      +++|.|+|+ |.+|+.+++.+.+.        +.++++.++++... +   +-.|+ ++|.|++++.+..++|+++|++|
T Consensus         6 klrvgiIG~-G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP   84 (390)
T 4h3v_A            6 NLGIGLIGY-AFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTP   84 (390)
T ss_dssp             EEEEEEECH-HHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSC
T ss_pred             cCcEEEEcC-CHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence            578999999 89999888877653        23677777776410 1   13465 58999999987667999999999


Q ss_pred             hhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHH--hccCCcE-EEccC
Q 019500          109 PPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAAL--NNQSKTR-LVGPN  158 (340)
Q Consensus       109 ~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~a--ar~~gir-viGPN  158 (340)
                      +..+.+.+.+|+++|.+.++=-.-..+.++.++|.+.+  +++.|+. .+|-|
T Consensus        85 ~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~~~~v~~~  137 (390)
T 4h3v_A           85 GDSHAEIAIAALEAGKHVLCEKPLANTVAEAEAMAAAAAKAAAGGIRSMVGFT  137 (390)
T ss_dssp             GGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHHHTTCCEEEECG
T ss_pred             hHHHHHHHHHHHHcCCCceeecCcccchhHHHHHHHHHHHHHhcCCceEEEee
Confidence            99999999999999987643222245556666664432  1445644 45554

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=98.36  E-value=1.1e-06  Score=87.13  Aligned_cols=117  Identities=16%  Similarity=0.148  Sum_probs=86.2

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCC-ce------ecC---ccccc----CHHHhhccCCCcEEEE
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-TE------HLG---LPVFN----TVAEAKAETKANASAI  105 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g-~~------i~G---~p~y~----sl~dip~~~~vDlavi  105 (340)
                      +.++|.|+|+ |.+|+.+++.+.+. ++++++.++++... +.      -.|   .++|.    +++++.+..++|+++|
T Consensus        19 ~~~rvgiIG~-G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i   97 (444)
T 2ixa_A           19 KKVRIAFIAV-GLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFV   97 (444)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEE
T ss_pred             CCceEEEEec-CHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEE
Confidence            4688999998 99999999988875 78888888776410 11      124   57898    9999987557999999


Q ss_pred             ecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccCC
Q 019500          106 YVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPNC  159 (340)
Q Consensus       106 ~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPNc  159 (340)
                      ++|+..+.+.+.+|+++|.+.++=-.-..+.++.+++.+++ +++|+. .++.|+
T Consensus        98 ~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a-~~~g~~~~v~~~~  151 (444)
T 2ixa_A           98 SSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVS-EQTGVPLMALENV  151 (444)
T ss_dssp             CCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHH-HHHCCCEEECCGG
T ss_pred             cCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHH-HHhCCeEEEEecc
Confidence            99999999999999999986532111234556777787776 566654 556543

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=98.35  E-value=7.3e-07  Score=86.27  Aligned_cols=119  Identities=12%  Similarity=0.073  Sum_probs=84.2

Q ss_pred             CcCCeEEEEeCCCCCcchH-HH----HHHHHcC-CeEE---------EeeCCCCCC-c---eecCcc-cccCHHHhhccC
Q 019500           39 VDKNTRVICQGITGKNGTF-HT----EQAIEYG-TKMV---------GGVTPKKGG-T---EHLGLP-VFNTVAEAKAET   98 (340)
Q Consensus        39 ~p~~iaViVvGasgk~G~~-v~----~~l~~~G-~~vv---------~~VnP~~~g-~---~i~G~p-~y~sl~dip~~~   98 (340)
                      .++.++|.|+|+.|.+|+. ++    +.+.+.+ ..++         +.++++... +   +-.|++ +|.+++++.+..
T Consensus         3 ~~~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~   82 (383)
T 3oqb_A            3 TTQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADK   82 (383)
T ss_dssp             CCEEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCS
T ss_pred             CCceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCC
Confidence            3567899999966999987 77    7666654 2211         345544310 1   235775 899999998765


Q ss_pred             CCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500           99 KANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus        99 ~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      ++|+++|++|+..+.+.+.+|+++|.+.++--.-..+.++.+++.+++ +++|+. .+|.|
T Consensus        83 ~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP~a~~~~~~~~l~~~a-~~~~~~~~v~~~  142 (383)
T 3oqb_A           83 NDTMFFDAATTQARPGLLTQAINAGKHVYCEKPIATNFEEALEVVKLA-NSKGVKHGTVQD  142 (383)
T ss_dssp             SCCEEEECSCSSSSHHHHHHHHTTTCEEEECSCSCSSHHHHHHHHHHH-HHTTCCEEECCG
T ss_pred             CCCEEEECCCchHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHH-HHcCCeEEEEec
Confidence            799999999999999999999999987532112245667778888776 666754 45554

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=98.29  E-value=1.7e-06  Score=82.44  Aligned_cols=109  Identities=12%  Similarity=0.135  Sum_probs=80.0

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC--CCcee------cC--cccccCHHHhhccCCCcEEEEecChhh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK--GGTEH------LG--LPVFNTVAEAKAETKANASAIYVPPPF  111 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~--~g~~i------~G--~p~y~sl~dip~~~~vDlavi~vp~~~  111 (340)
                      +++|.|+|+ |.++..+++.+ ..++++++.+++..  ..+..      .|  .++|.+++++.+..++|+++|++|+..
T Consensus         2 ~~rvgiiG~-G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~   79 (337)
T 3ip3_A            2 SLKICVIGS-SGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSL   79 (337)
T ss_dssp             CEEEEEECS-SSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHH
T ss_pred             ceEEEEEcc-chhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcch
Confidence            478889999 66777777777 55788888887653  11111      24  479999999987447999999999999


Q ss_pred             HHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE
Q 019500          112 AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR  153 (340)
Q Consensus       112 v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir  153 (340)
                      +.+.+.+|+++|.+.++=-.-..+.++.+++.+++ +++|..
T Consensus        80 H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a-~~~g~~  120 (337)
T 3ip3_A           80 NGKILLEALERKIHAFVEKPIATTFEDLEKIRSVY-QKVRNE  120 (337)
T ss_dssp             HHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHH-HHHTTT
T ss_pred             HHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHH-HHhCCc
Confidence            99999999999987532112244556777887776 566654

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=98.28  E-value=6.3e-05  Score=75.15  Aligned_cols=250  Identities=13%  Similarity=0.173  Sum_probs=146.0

Q ss_pred             EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecC----hhhHHHHHHHHH
Q 019500           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVP----PPFAAAAILEAM  120 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp----~~~v~~~v~ea~  120 (340)
                      |.++.-||.+++.+...+.+.|.-.-+.|.-..  +.  ++..-+-|+-+.++.+.++++++.-    +....++++.+ 
T Consensus       152 v~~vsqSG~~~~~~~~~~~~~g~G~s~~vs~G~--~~--~~~~~d~l~~~~~D~~t~~I~l~~E~i~~~~~f~~~a~~~-  226 (457)
T 2csu_A          152 VAFISQSGALGAGIVYKTIKEDIGFSKFISVGN--MA--DVDFAELMEYLADTEEDKAIALYIEGVRNGKKFMEVAKRV-  226 (457)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCEESEEEECTT--CC--SSCHHHHHHHHTTCSSCCEEEEEESCCSCHHHHHHHHHHH-
T ss_pred             EEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCC--cC--CCCHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHHHHHh-
Confidence            444588888888888777777654333444332  11  3322222333333335788888754    45556666666 


Q ss_pred             HcCCcEEEEecCCCChhhH-------------HHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCCCCCCCcEEEEe
Q 019500          121 EAELDLVVCITEGIPQHDM-------------VRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVS  187 (340)
Q Consensus       121 ~~Gvk~vvi~t~Gf~e~~~-------------~~l~~~aar~~girviGPNc~Gi~~p~~~~~~~~~~~~~~~G~valvS  187 (340)
                      ..+.+. |++-+|-++...             .+....+-|+.|+..+- +-.-+..   ....+.. ..++-++|++++
T Consensus       227 ~~~KPV-v~~k~G~~~~g~~aa~~Htgalag~~~~~~AafRqaGv~~v~-~~~El~~---~~~~l~~-~~~~g~rvaiit  300 (457)
T 2csu_A          227 TKKKPI-IALKAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVAN-TIDEMLS---MARAFSQ-PLPRGNKVAIMT  300 (457)
T ss_dssp             HHHSCE-EEEECC------------------CHHHHHHHHHHTTCEEES-SHHHHHH---HHTTTTS-CCCSSSEEEEEE
T ss_pred             cCCCCE-EEEEcCCCccccchhhcccCccCCcHHHHHHHHHhCCCeEEC-CHHHHHH---HHHHhcC-CCCCCCcEEEEE
Confidence            345555 555666543321             12222222677765331 1000000   0011111 234567899999


Q ss_pred             cChHHHHHHHHHHHhCCCCc---------------------eEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEcc-
Q 019500          188 RSGTLTYEAVFQTTAVGLGQ---------------------STCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEI-  245 (340)
Q Consensus       188 QSG~l~~~~~~~~~~~giG~---------------------S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~-  245 (340)
                      -||+++...+|.+.+.|+-+                     ...+-+|.++. .-.+.+.++.+.+||++++|++.+-. 
T Consensus       301 ngGG~~~laaD~~~~~Gl~l~~l~~~t~~~L~~~lp~~~~~~NPlDl~g~a~-~~~~~~al~~~l~dp~vd~vlv~~~~~  379 (457)
T 2csu_A          301 NAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASAR-GEDYYRTAKLLLQDPNVDMLIAICVVP  379 (457)
T ss_dssp             SCHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCC-HHHHHHHHHHHHHSTTCSEEEEEEECC
T ss_pred             CCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccccccCCCeeCCCCCC-HHHHHHHHHHHhcCCCCCEEEEEcccc
Confidence            99999999999999888763                     23555655531 23467889999999999999998731 


Q ss_pred             -CC-Cc-HHHHHHHHHHhC---CCCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeec
Q 019500          246 -GG-TA-EEDAAALIKESG---TEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVV  319 (340)
Q Consensus       246 -~g-~~-~~~~~~f~~a~r---~~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v  319 (340)
                       .| .. ...+..+.++++   .+|||++...+.+..                            +.....|+++|+...
T Consensus       380 ~~Gg~~~~~~a~~i~~al~~~~~~kPvvv~~~~g~~~----------------------------~~~~~~L~~~Gip~~  431 (457)
T 2csu_A          380 TFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYVS----------------------------EKAKELLEKNGIPTY  431 (457)
T ss_dssp             CSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTTT----------------------------HHHHHHHHTTTCCEE
T ss_pred             ccccCCchhHHHHHHHHHHHhcCCCCEEEEeCCCcch----------------------------HHHHHHHHhCCCCcc
Confidence             11 11 233444554433   679999965442211                            224567889999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 019500          320 ESPAKIGAAMLEVFK  334 (340)
Q Consensus       320 ~~~~el~~~~~~~~~  334 (340)
                      +++++-..++..+.+
T Consensus       432 ~spe~Av~al~~l~~  446 (457)
T 2csu_A          432 ERPEDVASAAYALVE  446 (457)
T ss_dssp             SSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999988877654

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=98.13  E-value=1.7e-05  Score=76.15  Aligned_cols=158  Identities=15%  Similarity=0.058  Sum_probs=102.6

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc---------CCeEEEeeCCCCCCcee-------------cCccccc--CHHHhhcc
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY---------GTKMVGGVTPKKGGTEH-------------LGLPVFN--TVAEAKAE   97 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~---------G~~vv~~VnP~~~g~~i-------------~G~p~y~--sl~dip~~   97 (340)
                      +++|.|+|+ |++|+.+++.+.+.         +.++++..+++.  ...             ...++|.  +++++.+.
T Consensus         2 mirvgIiG~-G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~--~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~   78 (327)
T 3do5_A            2 MIKIAIVGF-GTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKS--SISGDFSLVEALRMKRETGMLRDDAKAIEVVRS   78 (327)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSC--EEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHH
T ss_pred             cEEEEEEec-cHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCCh--HhccccCHHHHHhhhccCccccCCCCHHHHhcC
Confidence            478899998 99999999877653         567888888764  221             1134676  99998865


Q ss_pred             CCCcEEEEecChhhH----HHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCC--Ccccc
Q 019500           98 TKANASAIYVPPPFA----AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG--ECKIG  171 (340)
Q Consensus        98 ~~vDlavi~vp~~~v----~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~--~~~~~  171 (340)
                      .++|++++++|++.+    .+.+.+|+++|.+.+. -..+--..+..+|.+++ +++|..+.=.-+.|-..|.  .++- 
T Consensus        79 ~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~-~NKkpla~~~~eL~~~A-~~~g~~~~~ea~v~~g~Pii~~l~~-  155 (327)
T 3do5_A           79 ADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVT-SNKGPLVAEFHGLMSLA-ERNGVRLMYEATVGGAMPVVKLAKR-  155 (327)
T ss_dssp             SCCSEEEECCCCC----CHHHHHHHHHTTTCEEEE-CCSHHHHHHHHHHHHHH-HHTTCCEECGGGSSTTSCCHHHHHT-
T ss_pred             CCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEe-cCchhhHHHHHHHHHHH-HhhCCcEEEEEEeeecCHHHHHHHH-
Confidence            579999999999875    8899999999998632 21121112456676665 7888877644444444454  1111 


Q ss_pred             cCCCCCCCCCcEEEEe--cChHHHHHHHHHHHhCCCCceEEe
Q 019500          172 IMPGYIHKPGRIGIVS--RSGTLTYEAVFQTTAVGLGQSTCV  211 (340)
Q Consensus       172 ~~~~~~~~~G~valvS--QSG~l~~~~~~~~~~~giG~S~~v  211 (340)
                           ....+.|.=|.  .||+..+ ++....+.|..|+.++
T Consensus       156 -----~l~~~~I~~I~GIlnGT~ny-ilt~m~~~g~~f~~~l  191 (327)
T 3do5_A          156 -----YLALCEIESVKGIFNGTCNY-ILSRMEEERLPYEHIL  191 (327)
T ss_dssp             -----TTTTSCEEEEEEECCHHHHH-HHHHHHHHCCCHHHHH
T ss_pred             -----HhhCCCccEEEEEECCCcCc-chhhcCcCCcCHHHHH
Confidence                 12346666555  3888655 4444445677777655

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=98.10  E-value=6.7e-06  Score=77.72  Aligned_cols=107  Identities=7%  Similarity=0.003  Sum_probs=76.0

Q ss_pred             eEEEEeCCCCCcch-HHHHHHHHc-CCeEEEeeCCCCCC-c---eecCccc-ccC-HHHhhccCCCcEEEEecChhhHHH
Q 019500           43 TRVICQGITGKNGT-FHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLPV-FNT-VAEAKAETKANASAIYVPPPFAAA  114 (340)
Q Consensus        43 iaViVvGasgk~G~-~v~~~l~~~-G~~vv~~VnP~~~g-~---~i~G~p~-y~s-l~dip~~~~vDlavi~vp~~~v~~  114 (340)
                      ++|.|+|+ |++|+ .+++.+.+. +++++ .++++... +   +-.|++. |.+ .+.+ .+ ++|++++++|+..+.+
T Consensus         3 ~~igiIG~-G~ig~~~~~~~l~~~~~~~l~-v~d~~~~~~~~~a~~~g~~~~~~~~~~~l-~~-~~D~V~i~tp~~~h~~   78 (323)
T 1xea_A            3 LKIAMIGL-GDIAQKAYLPVLAQWPDIELV-LCTRNPKVLGTLATRYRVSATCTDYRDVL-QY-GVDAVMIHAATDVHST   78 (323)
T ss_dssp             EEEEEECC-CHHHHHTHHHHHTTSTTEEEE-EECSCHHHHHHHHHHTTCCCCCSSTTGGG-GG-CCSEEEECSCGGGHHH
T ss_pred             cEEEEECC-CHHHHHHHHHHHHhCCCceEE-EEeCCHHHHHHHHHHcCCCccccCHHHHh-hc-CCCEEEEECCchhHHH
Confidence            67888899 99998 488888775 67877 77776410 1   1246664 544 4444 32 6999999999999999


Q ss_pred             HHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEE
Q 019500          115 AILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL  154 (340)
Q Consensus       115 ~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girv  154 (340)
                      .+.+|+++|.+.++--....+.++.+++.+++ +++|+.+
T Consensus        79 ~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a-~~~g~~~  117 (323)
T 1xea_A           79 LAAFFLHLGIPTFVDKPLAASAQECENLYELA-EKHHQPL  117 (323)
T ss_dssp             HHHHHHHTTCCEEEESCSCSSHHHHHHHHHHH-HHTTCCE
T ss_pred             HHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHH-HhcCCeE
Confidence            99999999987643222345566777787776 6677653

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=98.07  E-value=4.4e-06  Score=83.30  Aligned_cols=111  Identities=14%  Similarity=0.046  Sum_probs=77.9

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCC-ce----ecC----------------------cccccCH
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-TE----HLG----------------------LPVFNTV   91 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g-~~----i~G----------------------~p~y~sl   91 (340)
                      .+.++|.|+|+ |++|+.+++.+.+. ++++++.++++... +.    ..|                      .++|.++
T Consensus        21 ~k~IRVGIIGa-G~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~   99 (446)
T 3upl_A           21 GKPIRIGLIGA-GEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDN   99 (446)
T ss_dssp             TCCEEEEEECC-SHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCH
T ss_pred             CCceEEEEECC-hHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCH
Confidence            35799999999 99999999887764 77888777765410 11    113                      4689999


Q ss_pred             HHhhccCCCcEEEEecCh-hhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE
Q 019500           92 AEAKAETKANASAIYVPP-PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR  153 (340)
Q Consensus        92 ~dip~~~~vDlavi~vp~-~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir  153 (340)
                      +++.+..++|++++++|. +.+.+.+.+|+++|.+.+. .......++..+|.+++ +++|+.
T Consensus       100 eeLL~d~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv~-~nk~l~~~eg~eL~~~A-~e~Gvv  160 (446)
T 3upl_A          100 DLILSNPLIDVIIDATGIPEVGAETGIAAIRNGKHLVM-MNVEADVTIGPYLKAQA-DKQGVI  160 (446)
T ss_dssp             HHHHTCTTCCEEEECSCCHHHHHHHHHHHHHTTCEEEE-CCHHHHHHHHHHHHHHH-HHHTCC
T ss_pred             HHHhcCCCCCEEEEcCCChHHHHHHHHHHHHcCCcEEe-cCcccCHHHHHHHHHHH-HHhCCe
Confidence            999876579999999975 6788999999999988643 33322223344555554 555544

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=97.95  E-value=1.4e-05  Score=79.72  Aligned_cols=162  Identities=12%  Similarity=0.041  Sum_probs=105.7

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHH----------cCCeEEEeeCCCCCC-ce-ecCcccccCHHHhhccCCCcEEEEec
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIE----------YGTKMVGGVTPKKGG-TE-HLGLPVFNTVAEAKAETKANASAIYV  107 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~----------~G~~vv~~VnP~~~g-~~-i~G~p~y~sl~dip~~~~vDlavi~v  107 (340)
                      .+.++|.|+|+ |++|+.+++.+.+          .++++++.++++... .. ..+.+.|.+++++.+..++|++++++
T Consensus         8 Mk~irIgIIG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~~~~~~~d~~ell~d~diDvVve~t   86 (444)
T 3mtj_A            8 MKPIHVGLLGL-GTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAGGLPLTTNPFDVVDDPEIDIVVELI   86 (444)
T ss_dssp             CSCEEEEEECC-HHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHTTCCEESCTHHHHTCTTCCEEEECC
T ss_pred             hCcccEEEECC-CHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcccCcccCCHHHHhcCCCCCEEEEcC
Confidence            35689999998 9999888776543          256788788876410 11 24667899999998765799999999


Q ss_pred             Ch-hhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCC--CcccccCCCCCCCCCcEE
Q 019500          108 PP-PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG--ECKIGIMPGYIHKPGRIG  184 (340)
Q Consensus       108 p~-~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~--~~~~~~~~~~~~~~G~va  184 (340)
                      |. +.+.+.+.+|+++|.+. +.-......++..+|.+++ +++|..+.-..+.|-..|.  .++-      ....|.|+
T Consensus        87 p~~~~h~~~~~~AL~aGKhV-vtenkal~a~~~~eL~~~A-~~~gv~l~~Ea~V~~giPii~~Lre------lL~~~~Ig  158 (444)
T 3mtj_A           87 GGLEPARELVMQAIANGKHV-VTANKHLVAKYGNEIFAAA-QAKGVMVTFEAAVAGGIPIIKALRE------GLTANRIE  158 (444)
T ss_dssp             CSSTTHHHHHHHHHHTTCEE-EECCHHHHHHHHHHHHHHH-HHHTCCEECGGGSSTTSCHHHHHHT------TTTTSCEE
T ss_pred             CCchHHHHHHHHHHHcCCEE-EECCcccCHHHHHHHHHHH-HHhCCeEEEEEeeeCChHHHHHHHH------HHhCCCCc
Confidence            96 89999999999999876 3222332234456777766 7788877422222222342  1111      13346666


Q ss_pred             EEe--cChHHHHHHHHHHHhCCCCceEEe
Q 019500          185 IVS--RSGTLTYEAVFQTTAVGLGQSTCV  211 (340)
Q Consensus       185 lvS--QSG~l~~~~~~~~~~~giG~S~~v  211 (340)
                      =|.  -||+..+-+ ....+.|..|+.++
T Consensus       159 ~I~GIlnGT~nyil-t~m~~~g~~f~~~l  186 (444)
T 3mtj_A          159 WLAGIINGTSNFIL-SEMRDKGAAFDDVL  186 (444)
T ss_dssp             EEEEECCHHHHHHH-HHHHHHCCCHHHHH
T ss_pred             eEEEEEcCCccccc-ccCCCCCCCHHHHH
Confidence            554  477766544 44445688887766

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=97.93  E-value=1.7e-05  Score=73.44  Aligned_cols=108  Identities=13%  Similarity=0.131  Sum_probs=84.9

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHH
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea  119 (340)
                      ...++|+++|. |++|+.+++.  . ++++++..+ .+. .++ |+.++.+++++..  ++|+++-|.+++.+.+.+..+
T Consensus        10 ~~~~rV~i~G~-GaIG~~v~~~--~-~leLv~v~~-~k~-gel-gv~a~~d~d~lla--~pD~VVe~A~~~av~e~~~~i   80 (253)
T 1j5p_A           10 HHHMTVLIIGM-GNIGKKLVEL--G-NFEKIYAYD-RIS-KDI-PGVVRLDEFQVPS--DVSTVVECASPEAVKEYSLQI   80 (253)
T ss_dssp             -CCCEEEEECC-SHHHHHHHHH--S-CCSEEEEEC-SSC-CCC-SSSEECSSCCCCT--TCCEEEECSCHHHHHHHHHHH
T ss_pred             cccceEEEECc-CHHHHHHHhc--C-CcEEEEEEe-ccc-ccc-CceeeCCHHHHhh--CCCEEEECCCHHHHHHHHHHH
Confidence            34689999999 9999999987  4 888887766 332 345 8888999999985  699999999999999999999


Q ss_pred             HHcCCcEEEEecCC-CChhh-HHHHHHHHhccCCcEEEccC
Q 019500          120 MEAELDLVVCITEG-IPQHD-MVRVKAALNNQSKTRLVGPN  158 (340)
Q Consensus       120 ~~~Gvk~vvi~t~G-f~e~~-~~~l~~~aar~~girviGPN  158 (340)
                      +++|+..+ +.+.| +.+.+ .++|.+++ +++|-++..|.
T Consensus        81 L~aG~dvv-~~S~gaLad~~l~~~L~~aA-~~gg~~l~vpS  119 (253)
T 1j5p_A           81 LKNPVNYI-IISTSAFADEVFRERFFSEL-KNSPARVFFPS  119 (253)
T ss_dssp             TTSSSEEE-ECCGGGGGSHHHHHHHHHHH-HTCSCEEECCC
T ss_pred             HHCCCCEE-EcChhhhcCHHHHHHHHHHH-HHCCCeEEecC
Confidence            99999974 46666 44444 45566665 88998987665

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.88  E-value=6.1e-05  Score=71.33  Aligned_cols=111  Identities=12%  Similarity=0.091  Sum_probs=74.9

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccCCCcEEEEecCh-hhHHHHH
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPP-PFAAAAI  116 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~~vDlavi~vp~-~~v~~~v  116 (340)
                      +..+|.|+|+ |.||..++++|.+.|+++. .+|++... ++  -.|+..+.+++++.+  +.|++++++|. ..+.+++
T Consensus        30 ~~~~I~iIG~-G~mG~~~a~~l~~~G~~V~-~~dr~~~~~~~l~~~g~~~~~~~~e~~~--~aDvVi~~vp~~~~~~~v~  105 (320)
T 4dll_A           30 YARKITFLGT-GSMGLPMARRLCEAGYALQ-VWNRTPARAASLAALGATIHEQARAAAR--DADIVVSMLENGAVVQDVL  105 (320)
T ss_dssp             CCSEEEEECC-TTTHHHHHHHHHHTTCEEE-EECSCHHHHHHHHTTTCEEESSHHHHHT--TCSEEEECCSSHHHHHHHH
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHhCCCeEE-EEcCCHHHHHHHHHCCCEeeCCHHHHHh--cCCEEEEECCCHHHHHHHH
Confidence            4457888899 9999999999999999855 66765410 11  137788889999886  58999999995 4555555


Q ss_pred             H--HHHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          117 L--EAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       117 ~--ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                      .  +..+. .-..+++-++..+....+++.+.+ ++.|+.++.
T Consensus       106 ~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~-~~~g~~~~~  147 (320)
T 4dll_A          106 FAQGVAAAMKPGSLFLDMASITPREARDHAARL-GALGIAHLD  147 (320)
T ss_dssp             TTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHH-HHTTCEEEE
T ss_pred             cchhHHhhCCCCCEEEecCCCCHHHHHHHHHHH-HHcCCEEEe
Confidence            4  33332 233344445555555555565555 566787764

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=97.86  E-value=3.3e-05  Score=63.79  Aligned_cols=86  Identities=10%  Similarity=0.141  Sum_probs=65.8

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCC--CCceecCcccccCHHHhh---ccCCCcEEEEecChh---h
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK--GGTEHLGLPVFNTVAEAK---AETKANASAIYVPPP---F  111 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~--~g~~i~G~p~y~sl~dip---~~~~vDlavi~vp~~---~  111 (340)
                      +..+|+|+|+ |..|..+++.+.+. ||++++.++++.  .|..+.|+|+|. ++++.   .+..+|.+++++|..   .
T Consensus         3 ~~~~vlIiGa-G~~g~~l~~~l~~~~g~~vvg~~d~~~~~~g~~i~g~pV~g-~~~l~~~~~~~~id~viia~~~~~~~~   80 (141)
T 3nkl_A            3 AKKKVLIYGA-GSAGLQLANMLRQGKEFHPIAFIDDDRKKHKTTMQGITIYR-PKYLERLIKKHCISTVLLAVPSASQVQ   80 (141)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHSSSEEEEEEECSCGGGTTCEETTEEEEC-GGGHHHHHHHHTCCEEEECCTTSCHHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCcEEEEEEECCcccCCCEecCeEEEC-HHHHHHHHHHCCCCEEEEeCCCCCHHH
Confidence            4557889999 88899999988875 899888887653  345789999987 55554   344699999999854   3


Q ss_pred             HHHHHHHHHHcCCcEEE
Q 019500          112 AAAAILEAMEAELDLVV  128 (340)
Q Consensus       112 v~~~v~ea~~~Gvk~vv  128 (340)
                      ..++++.|.+.|++..+
T Consensus        81 ~~~i~~~l~~~gv~v~~   97 (141)
T 3nkl_A           81 KKVIIESLAKLHVEVLT   97 (141)
T ss_dssp             HHHHHHHHHTTTCEEEE
T ss_pred             HHHHHHHHHHcCCeEEE
Confidence            47888899999998644

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.85  E-value=4e-05  Score=72.23  Aligned_cols=127  Identities=14%  Similarity=0.088  Sum_probs=76.3

Q ss_pred             CCCCCCCCCcccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccCCCc
Q 019500           25 RSFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKAN  101 (340)
Q Consensus        25 ~~~~~~~~~l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~~vD  101 (340)
                      .||.-.+|+...--..+..+|.|+|+ |.||..++++|.+.|+++. ..|++... +.  -.|+..+.+++++.+  +.|
T Consensus         4 ~~~~~~~~~~~~~~~~~m~~I~iIG~-G~mG~~~A~~l~~~G~~V~-~~dr~~~~~~~l~~~g~~~~~~~~~~~~--~aD   79 (310)
T 3doj_A            4 SHHHHHHSSGLVPRGSHMMEVGFLGL-GIMGKAMSMNLLKNGFKVT-VWNRTLSKCDELVEHGASVCESPAEVIK--KCK   79 (310)
T ss_dssp             --------------CCCSCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSGGGGHHHHHTTCEECSSHHHHHH--HCS
T ss_pred             cccccccccccCcccccCCEEEEECc-cHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHCCCeEcCCHHHHHH--hCC
Confidence            34444444333333445678888999 9999999999999999855 56665410 11  247788889999876  489


Q ss_pred             EEEEecChh-hHHHHH---HHHHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          102 ASAIYVPPP-FAAAAI---LEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       102 lavi~vp~~-~v~~~v---~ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                      ++++++|.. .+.+++   ++..+. .-..+++-++.......+++.+.+ ++.|+.++.
T Consensus        80 vvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~-~~~g~~~v~  138 (310)
T 3doj_A           80 YTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAI-TGKGGRFVE  138 (310)
T ss_dssp             EEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHH-HHTTCEEEE
T ss_pred             EEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHH-HHcCCEEEe
Confidence            999999864 555555   333322 123345555555555555666555 566887775

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=97.82  E-value=7.7e-05  Score=71.44  Aligned_cols=157  Identities=17%  Similarity=0.137  Sum_probs=99.1

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHc-------CCeEEEeeCCCCCCcee---------------cC-cc--cccCHHHhh
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEY-------GTKMVGGVTPKKGGTEH---------------LG-LP--VFNTVAEAK   95 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~-------G~~vv~~VnP~~~g~~i---------------~G-~p--~y~sl~dip   95 (340)
                      +.++|.|+|+ |++|+.+++.+.+.       ++++++..|.+.  ...               .| ++  .| +..++.
T Consensus         3 k~irVgIiG~-G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~--~~~~~~idl~~~~~~~~~~g~~~~~~~-d~~e~l   78 (325)
T 3ing_A            3 KEIRIILMGT-GNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRS--YASGRNLDISSIISNKEKTGRISDRAF-SGPEDL   78 (325)
T ss_dssp             CEEEEEEECC-SHHHHHHHHHHHHHHHHC--CEEEEEEEECSSB--EEECSSCCHHHHHHHHHHHSCSCSSBC-CSGGGG
T ss_pred             ceEEEEEEcC-cHHHHHHHHHHHhchhhccCCCEEEEEEEecCh--hhcccccCHHHHHHHhhhcCCCCcccC-CHHHHh
Confidence            4688999998 99999999988763       456887777653  111               12 22  23 556666


Q ss_pred             ccCCCcEEEEecChhhH----HHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCC--Ccc
Q 019500           96 AETKANASAIYVPPPFA----AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG--ECK  169 (340)
Q Consensus        96 ~~~~vDlavi~vp~~~v----~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~--~~~  169 (340)
                      ...++|++++++|+..+    .+.+.+|+++|++.+. -..+.-.++..+|.+++ +++|..+.=.-+.|--.|-  .++
T Consensus        79 ~~~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVt-aNK~~la~~~~eL~~lA-~~~g~~~~~Ea~vg~giPii~~l~  156 (325)
T 3ing_A           79 MGEAADLLVDCTPASRDGVREYSLYRMAFESGMNVVT-ANKSGLANKWHDIMDSA-NQNSKYIRYEATVAGGVPLFSVLD  156 (325)
T ss_dssp             TTSCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEE-CCCHHHHHHHHHHHHHH-HHHTCCEECGGGSSTTSCCHHHHH
T ss_pred             cCCCCCEEEECCCCccccchHHHHHHHHHHCCCeEEE-cCchhHHHHHHHHHHHH-HHcCCeEEEEeeecccCHHHHHHH
Confidence            54579999999997533    5889999999998632 22332224556677765 7788876644444444454  111


Q ss_pred             cccCCCCCCCCCcEEEEe--cChHHHHHHHHHHHhCCCCceEEe
Q 019500          170 IGIMPGYIHKPGRIGIVS--RSGTLTYEAVFQTTAVGLGQSTCV  211 (340)
Q Consensus       170 ~~~~~~~~~~~G~valvS--QSG~l~~~~~~~~~~~giG~S~~v  211 (340)
                      -.      ...+.|.-|.  -||+..+ +++.. +.|..|+.++
T Consensus       157 ~~------l~g~~I~~i~Gi~nGT~ny-il~~m-~~g~~f~~~l  192 (325)
T 3ing_A          157 YS------ILPSKVKRFRGIVSSTINY-VIRNM-ANGRSLRDVV  192 (325)
T ss_dssp             HT------CTTCCEEEEEEECCHHHHH-HHHHH-HTTCCHHHHH
T ss_pred             HH------hhCCCeeEEEEEEEeeeeE-Eeecc-cCCCCHHHHH
Confidence            11      2336666664  6887655 44444 5677766544

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.81  E-value=6.3e-05  Score=69.80  Aligned_cols=109  Identities=14%  Similarity=0.100  Sum_probs=75.6

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccCCCcEEEEecC-hhhHHHHH--
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVP-PPFAAAAI--  116 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~~vDlavi~vp-~~~v~~~v--  116 (340)
                      .+|.|+|+ |+||..+.++|.+.|++++ ..|++... +.  -.|+..+.+++++.+  +.|++++++| +..+.+++  
T Consensus         2 ~~i~iIG~-G~mG~~~a~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~aDvvi~~vp~~~~~~~v~~~   77 (287)
T 3pef_A            2 QKFGFIGL-GIMGSAMAKNLVKAGCSVT-IWNRSPEKAEELAALGAERAATPCEVVE--SCPVTFAMLADPAAAEEVCFG   77 (287)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSGGGGHHHHHTTCEECSSHHHHHH--HCSEEEECCSSHHHHHHHHHS
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHCCCeecCCHHHHHh--cCCEEEEEcCCHHHHHHHHcC
Confidence            36777899 9999999999999999865 66765410 11  147888899999876  4899999999 56777777  


Q ss_pred             -HHHHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          117 -LEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       117 -~ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                       ++..+. .-..+++-+++......+++.+.+ ++.|+.++.
T Consensus        78 ~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~-~~~g~~~~~  118 (287)
T 3pef_A           78 KHGVLEGIGEGRGYVDMSTVDPATSQRIGVAV-VAKGGRFLE  118 (287)
T ss_dssp             TTCHHHHCCTTCEEEECSCCCHHHHHHHHHHH-HHTTCEEEE
T ss_pred             cchHhhcCCCCCEEEeCCCCCHHHHHHHHHHH-HHhCCEEEE
Confidence             544432 223345555666656556666555 456777764

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=97.78  E-value=0.00012  Score=68.18  Aligned_cols=92  Identities=14%  Similarity=0.122  Sum_probs=68.4

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCC---eEEEeeCCCCCC-ce---ecCcccccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGG-TE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~---~vv~~VnP~~~g-~~---i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~  115 (340)
                      .+|.|+|+ |+||+.+++.|.+.|+   ++. ..|++... +.   -.|+.++.+..+..+  +.|++++++|++.+.++
T Consensus         4 ~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~-v~dr~~~~~~~l~~~~gi~~~~~~~~~~~--~aDvVilav~p~~~~~v   79 (280)
T 3tri_A            4 SNITFIGG-GNMARNIVVGLIANGYDPNRIC-VTNRSLDKLDFFKEKCGVHTTQDNRQGAL--NADVVVLAVKPHQIKMV   79 (280)
T ss_dssp             SCEEEESC-SHHHHHHHHHHHHTTCCGGGEE-EECSSSHHHHHHHHTTCCEEESCHHHHHS--SCSEEEECSCGGGHHHH
T ss_pred             CEEEEEcc-cHHHHHHHHHHHHCCCCCCeEE-EEeCCHHHHHHHHHHcCCEEeCChHHHHh--cCCeEEEEeCHHHHHHH
Confidence            35667799 9999999999999988   544 67766410 11   248888888888776  58999999999999999


Q ss_pred             HHHHHHc--CCc-EEEEecCCCChhh
Q 019500          116 ILEAMEA--ELD-LVVCITEGIPQHD  138 (340)
Q Consensus       116 v~ea~~~--Gvk-~vvi~t~Gf~e~~  138 (340)
                      +++....  .-+ .++-+++|++.+.
T Consensus        80 l~~l~~~~l~~~~iiiS~~agi~~~~  105 (280)
T 3tri_A           80 CEELKDILSETKILVISLAVGVTTPL  105 (280)
T ss_dssp             HHHHHHHHHTTTCEEEECCTTCCHHH
T ss_pred             HHHHHhhccCCCeEEEEecCCCCHHH
Confidence            9887653  333 5555678987543

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=97.78  E-value=8e-05  Score=71.34  Aligned_cols=159  Identities=15%  Similarity=0.020  Sum_probs=98.3

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHc--------CCeEEEeeCCCCCC-ce-e-----------cCcc-ccc---CHHHhh
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEY--------GTKMVGGVTPKKGG-TE-H-----------LGLP-VFN---TVAEAK   95 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~--------G~~vv~~VnP~~~g-~~-i-----------~G~p-~y~---sl~dip   95 (340)
                      +.++|.|+|+ |.+|+.+++.+.+.        ++++++..+++... .+ +           .+++ .|.   +++++.
T Consensus         5 ~~irvgIiG~-G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll   83 (331)
T 3c8m_A            5 KTINLSIFGL-GNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEAL   83 (331)
T ss_dssp             EEEEEEEECC-SHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHH
T ss_pred             cEEeEEEEec-CHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHh
Confidence            3588999999 99999999887663        35777777765410 11 1           1333 565   899987


Q ss_pred             ccCCCcEEEEecChh----hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCC--Ccc
Q 019500           96 AETKANASAIYVPPP----FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG--ECK  169 (340)
Q Consensus        96 ~~~~vDlavi~vp~~----~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~--~~~  169 (340)
                       ..++|++++++|+.    .+.+.+.+|+++|.+.+. ...+.-.++..+|.+++ +++|+++.-..+.|--.|.  .++
T Consensus        84 -~~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvt-anK~pla~~~~eL~~~A-~~~gv~~~~ea~vg~giPii~~l~  160 (331)
T 3c8m_A           84 -ARDFDIVVDATPASADGKKELAFYKETFENGKDVVT-ANKSGLANFWPEIMEYA-RSNNRRIRYEATVAGGVPLFSFID  160 (331)
T ss_dssp             -HSSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEE-CCCHHHHHHHHHHHHHH-HHHTCCEECGGGSSTTSCCHHHHH
T ss_pred             -CCCCCEEEECCCCCCccchHHHHHHHHHHCCCeEEe-cCchhhHHHHHHHHHHH-HHcCCEEEEEeecccccHHHHHHH
Confidence             44799999999995    888899999999988632 11221123456676665 6778766544334333343  111


Q ss_pred             cccCCCCCCCCCcEEEE--ecChHHHHHHHHHHHhCCCCceEEe
Q 019500          170 IGIMPGYIHKPGRIGIV--SRSGTLTYEAVFQTTAVGLGQSTCV  211 (340)
Q Consensus       170 ~~~~~~~~~~~G~valv--SQSG~l~~~~~~~~~~~giG~S~~v  211 (340)
                      -..      ..+.|.-|  -.+|+..+- +... +.|..|+.++
T Consensus       161 ~~l------~g~~I~~I~GI~nGT~nyi-l~~m-~~g~~f~~~l  196 (331)
T 3c8m_A          161 YSV------LPSRIKKFRGIVSLTINYF-IREL-ANKREFDDVL  196 (331)
T ss_dssp             HHS------TTCCCCEEEEECCHHHHHH-HHHH-HTTCCHHHHH
T ss_pred             HHh------hcCcccEEEEEEeccceeE-ecch-hcCCCHHHHH
Confidence            111      22445444  246777543 3333 5677776655

>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}

Probab=97.71  E-value=0.001  Score=66.82  Aligned_cols=250  Identities=16%  Similarity=0.125  Sum_probs=137.7

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC--CceecCcccccCHHHhhccCCCcEEEEecC--hh-hHHHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--GTEHLGLPVFNTVAEAKAETKANASAIYVP--PP-FAAAAILE  118 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~--g~~i~G~p~y~sl~dip~~~~vDlavi~vp--~~-~v~~~v~e  118 (340)
                      +|.++.-||.+++.+...+.+.|.-.-+.|.-...  ..++.|+..-.-|+-+.+..+.++++++.-  .+ ...+.++.
T Consensus       114 ~vaivSqSGal~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~~~e~~~~~f~~~  193 (480)
T 3dmy_A          114 NIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNA  193 (480)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESCCCHHHHHHHHHH
T ss_pred             CEEEEeccHHHHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEecCCcHHHHHHHHH
Confidence            35555999999888888887765543333443220  013455543333444444345788888872  12 22345555


Q ss_pred             HHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCCCcccc-------cCCCCCCCCCcEEEEecChH
Q 019500          119 AMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIG-------IMPGYIHKPGRIGIVSRSGT  191 (340)
Q Consensus       119 a~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~~~~~~-------~~~~~~~~~G~valvSQSG~  191 (340)
                      +-+.+.+. |++-+|-++.+       . |+.|+-.+ .+.--+++...+ +.       ..|  .++-.++++||-||+
T Consensus       194 ar~~~KPV-V~~k~Grs~~g-------~-r~~Gvirv-~~~~el~~~a~~-l~~~~~~~~~qp--~~~G~rvaivtn~Gg  260 (480)
T 3dmy_A          194 MKATGKPT-VALFLGYTPAV-------A-RDENVWFA-SSLDEAARLACL-LSRVTARRNAIA--PVSSGFICGLYTGGT  260 (480)
T ss_dssp             HHHHCSCE-EEEETTCCCSS-------S-EETTEEEE-SSHHHHHHHHHH-HHHHHHHHHHHC--CCSCCEEEEEESCHH
T ss_pred             HHhCCCCE-EEEEeCCCCcc-------c-ccCCEEEE-CCHHHHHHHHHH-HhcCccccccCC--CCCCCeEEEEECCHH
Confidence            54566555 55666655433       0 22332111 000000000000 00       011  134457999999999


Q ss_pred             HHHHHHHHHHhCCCCce----------------EEe-------ecCCCCCCCC----CHHHHHHHhhcCCCccEEEE-EE
Q 019500          192 LTYEAVFQTTAVGLGQS----------------TCV-------GIGGDPFNGT----NFVDCVTKFIADPQTEGIIL-IG  243 (340)
Q Consensus       192 l~~~~~~~~~~~giG~S----------------~~v-------s~Gn~a~~dv----~~~d~l~~l~~Dp~T~~I~l-y~  243 (340)
                      ++....+.+.+ |+++-                ..+       |.||-.  |+    .+.+.|+-+.+||++.+|++ |+
T Consensus       261 ~gvlaaD~~~~-gl~l~~ls~~t~~~l~~~~~~~l~~~lp~~~s~~NPv--D~~d~~~~~~al~~~l~D~~vd~vlv~~v  337 (480)
T 3dmy_A          261 LAAEAAGLLAG-HLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPH--PMIDPTLRNQLIADLGAKPQVRVLLLDVV  337 (480)
T ss_dssp             HHHHHHHHHHH-HTTCC---CCGGGEEEEETTEEEEETTSHHHHTTSCC--TTTCCHHHHHHHHHGGGCTTEEEEEEEEE
T ss_pred             HHHHHHHHHHh-CCCCCCCCHHHHhhhhhhhhccHHHhCcchhhccCCc--CCCCHHHHHHHHHHHhcCCCCCEEEEEee
Confidence            99999999887 66653                333       344543  33    36788999999999998887 23


Q ss_pred             ccCC---Cc-HHHHHHHHHHhC-C--CCC--EEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHc
Q 019500          244 EIGG---TA-EEDAAALIKESG-T--EKP--IVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREA  314 (340)
Q Consensus       244 E~~g---~~-~~~~~~f~~a~r-~--~KP--Vvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qa  314 (340)
                      -+.+   ++ ..-++.+.++.+ .  +||  ++++-.|.... .                       ...+.....|+++
T Consensus       338 ~~~~~~~d~~~~~a~ai~~~~~~~~~~kp~v~v~~~~g~~~~-~-----------------------~~~~~~~~~L~~a  393 (480)
T 3dmy_A          338 IGFGATADPAASLVSAWQKACAARLDNQPLYAIATVTGTERD-P-----------------------QCRSQQIATLEDA  393 (480)
T ss_dssp             CSTTSCSCHHHHHHHHHHHHHHTSCTTSCCEEEEEEESCTTS-T-----------------------TCHHHHHHHHHHT
T ss_pred             cCCCCCCChHHHHHHHHHHHHHhccCCCCeEEEEEecCcccc-h-----------------------hhHHHHHHHHHhC
Confidence            1111   11 222333434332 3  799  34444443211 0                       1112235678999


Q ss_pred             CCeecCCHHHHHHHHHHHH
Q 019500          315 GVTVVESPAKIGAAMLEVF  333 (340)
Q Consensus       315 Gvv~v~~~~el~~~~~~~~  333 (340)
                      |+...+++++-..++..+.
T Consensus       394 GIp~f~spe~Av~a~~~l~  412 (480)
T 3dmy_A          394 GIAVVSSLPEATLLAAALI  412 (480)
T ss_dssp             TCEECSSHHHHHHHHHHHT
T ss_pred             CCcccCCHHHHHHHHHHHH
Confidence            9999999999888887655

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.69  E-value=0.00011  Score=71.21  Aligned_cols=111  Identities=14%  Similarity=0.109  Sum_probs=76.1

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce-----ecCcccccCHHHhhcc-CCCcEEEEecChhhHHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-----HLGLPVFNTVAEAKAE-TKANASAIYVPPPFAAAA  115 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~-----i~G~p~y~sl~dip~~-~~vDlavi~vp~~~v~~~  115 (340)
                      ..+|.|+|. |.||..++++|.+.|+++. ..|++.  +.     -.|+..+.+++|+.+. ..+|++++++|+..+.++
T Consensus        22 ~mkIgiIGl-G~mG~~~A~~L~~~G~~V~-v~dr~~--~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~~v~~v   97 (358)
T 4e21_A           22 SMQIGMIGL-GRMGADMVRRLRKGGHECV-VYDLNV--NAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAAVVDSM   97 (358)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCH--HHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGGGHHHH
T ss_pred             CCEEEEECc-hHHHHHHHHHHHhCCCEEE-EEeCCH--HHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHHHHHHH
Confidence            457788898 9999999999999999855 667654  21     2477788899998753 235999999999988888


Q ss_pred             HHHHHHcC-CcEEEEecCCCChhhHHHHHHHHhccCCcEEEcc
Q 019500          116 ILEAMEAE-LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGP  157 (340)
Q Consensus       116 v~ea~~~G-vk~vvi~t~Gf~e~~~~~l~~~aar~~girviGP  157 (340)
                      +++....- -..+|+-.+.....+..++.+.+ ++.|+.+++.
T Consensus        98 l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l-~~~g~~~vda  139 (358)
T 4e21_A           98 LQRMTPLLAANDIVIDGGNSHYQDDIRRADQM-RAQGITYVDV  139 (358)
T ss_dssp             HHHHGGGCCTTCEEEECSSCCHHHHHHHHHHH-HTTTCEEEEE
T ss_pred             HHHHHhhCCCCCEEEeCCCCChHHHHHHHHHH-HHCCCEEEeC
Confidence            87665432 22334334434444444555554 5678877643

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.68  E-value=7.1e-05  Score=70.69  Aligned_cols=115  Identities=12%  Similarity=0.090  Sum_probs=76.5

Q ss_pred             cCcCCeEEEEeCCCCCcchHHHHHHHHcCC-eEEEeeCCC--CCCc---eecCcccccCHHHhhccCCCcEEEEecChhh
Q 019500           38 FVDKNTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPK--KGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPF  111 (340)
Q Consensus        38 f~p~~iaViVvGasgk~G~~v~~~l~~~G~-~vv~~VnP~--~~g~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~  111 (340)
                      +.++..+|.|+|+ |.||..++++|.+.|+ ++. ..|++  ....   .-.|+..+.+++++.+  +.|++++++|+..
T Consensus        20 ~~~~~~~I~iIG~-G~mG~~~A~~L~~~G~~~V~-~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~--~aDvVi~~vp~~~   95 (312)
T 3qsg_A           20 FQSNAMKLGFIGF-GEAASAIASGLRQAGAIDMA-AYDAASAESWRPRAEELGVSCKASVAEVAG--ECDVIFSLVTAQA   95 (312)
T ss_dssp             -----CEEEEECC-SHHHHHHHHHHHHHSCCEEE-EECSSCHHHHHHHHHHTTCEECSCHHHHHH--HCSEEEECSCTTT
T ss_pred             ccCCCCEEEEECc-cHHHHHHHHHHHHCCCCeEE-EEcCCCCHHHHHHHHHCCCEEeCCHHHHHh--cCCEEEEecCchh
Confidence            4455678888899 9999999999999999 644 67764  1001   1247888889999876  4899999999999


Q ss_pred             HHHHHHHHHHcC-CcEEEEecCCCChhhHHHHHHHHhccC--CcEEEcc
Q 019500          112 AAAAILEAMEAE-LDLVVCITEGIPQHDMVRVKAALNNQS--KTRLVGP  157 (340)
Q Consensus       112 v~~~v~ea~~~G-vk~vvi~t~Gf~e~~~~~l~~~aar~~--girviGP  157 (340)
                      ..+++++..+.- -..+++-.+.......+++.+.+ ++.  |++++.+
T Consensus        96 ~~~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~-~~~~~g~~~vd~  143 (312)
T 3qsg_A           96 ALEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVI-SRHRPSAQYAAV  143 (312)
T ss_dssp             HHHHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHH-HHHCTTCEEEEE
T ss_pred             HHHHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHH-HhhcCCCeEEec
Confidence            988887766542 23345445555555555555544 334  6776643

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.67  E-value=0.00021  Score=66.83  Aligned_cols=108  Identities=18%  Similarity=0.183  Sum_probs=74.0

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccCCCcEEEEecCh-hhHHHHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPP-PFAAAAILE  118 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~~vDlavi~vp~-~~v~~~v~e  118 (340)
                      .+|.|+|+ |.||..++++|.+.|++++ .+|++... +.  -.|+..+.+++++.+   .|++++++|. ..+.+++++
T Consensus        16 ~~I~vIG~-G~mG~~~A~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~---aDvvi~~vp~~~~~~~v~~~   90 (296)
T 3qha_A           16 LKLGYIGL-GNMGAPMATRMTEWPGGVT-VYDIRIEAMTPLAEAGATLADSVADVAA---ADLIHITVLDDAQVREVVGE   90 (296)
T ss_dssp             CCEEEECC-STTHHHHHHHHTTSTTCEE-EECSSTTTSHHHHHTTCEECSSHHHHTT---SSEEEECCSSHHHHHHHHHH
T ss_pred             CeEEEECc-CHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHCCCEEcCCHHHHHh---CCEEEEECCChHHHHHHHHH
Confidence            35677798 9999999999999999854 55554411 11  247888889999875   8999999995 566777766


Q ss_pred             HHHcC-CcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          119 AMEAE-LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       119 a~~~G-vk~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                      ..+.- -..+++-++.......+++.+.+ ++.|+.++.
T Consensus        91 l~~~l~~g~ivv~~st~~~~~~~~~~~~~-~~~g~~~~~  128 (296)
T 3qha_A           91 LAGHAKPGTVIAIHSTISDTTAVELARDL-KARDIHIVD  128 (296)
T ss_dssp             HHTTCCTTCEEEECSCCCHHHHHHHHHHH-GGGTCEEEE
T ss_pred             HHHhcCCCCEEEEeCCCCHHHHHHHHHHH-HHcCCEEEe
Confidence            65432 23345455555555555666655 566777764

>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}

Probab=97.61  E-value=0.00033  Score=68.80  Aligned_cols=124  Identities=22%  Similarity=0.303  Sum_probs=93.6

Q ss_pred             CCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCC-CcHHHHHHHH
Q 019500          179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGG-TAEEDAAALI  257 (340)
Q Consensus       179 ~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g-~~~~~~~~f~  257 (340)
                      ..|+|++++-||+++...+|.+...|.....++-+|+.+ ..-.+.+.++.+.+||++++|++.+=+.- +...-++...
T Consensus       246 l~g~I~ii~Ng~Gl~~~t~D~i~~~G~~~aN~lD~gG~a-~~e~~~~al~~~l~d~~v~~ilv~i~ggi~~~~~vA~~i~  324 (397)
T 3ufx_B          246 LDGNIGIIGNGAGLVMYTLDLVNRVGGKPANFLDIGGGA-KADVVYNALKVVLKDPDVKGVFINIFGGITRADEVAKGVI  324 (397)
T ss_dssp             CSSSEEEEESSHHHHHHHHHHHHHTTCCBSEEEECCSCC-CHHHHHHHHHHHHTCTTCCEEEEEEEEEEEESHHHHHHHH
T ss_pred             CCCcEEEEecCccHHHHHHHHHHHcCCCcCCcEecCCCC-CHHHHHHHHHHHHcCCCCCEEEEECCCCCCCHHHHHHHHH
Confidence            469999999999999999999999999999999999986 34568888899999999999998544321 1123345566


Q ss_pred             HHhC---CCCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHHHHHHHHH
Q 019500          258 KESG---TEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEV  332 (340)
Q Consensus       258 ~a~r---~~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el~~~~~~~  332 (340)
                      ++++   .+||||+--.|. .                            .+.-...|++.|+...+|+++-..++.++
T Consensus       325 ~a~~~~~~~kPvvv~~~G~-~----------------------------~~~~~~~l~~~gip~~~~~e~Aa~~~~~l  373 (397)
T 3ufx_B          325 RALEEGLLTKPVVMRVAGT-A----------------------------EEEAKKLLEGKPVYMYPTSIEAAKVTVAM  373 (397)
T ss_dssp             HHHTTTCCCSCEEEEEEEE-C----------------------------HHHHHHHTTTSSEEECSSHHHHHHHHHHS
T ss_pred             HHHHhhCCCCcEEEEccCC-C----------------------------HHHHHHHHHhCCCcccCCHHHHHHHHHHH
Confidence            6665   379999988773 1                            12234567788888888888776666543

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.61  E-value=0.00044  Score=64.99  Aligned_cols=110  Identities=19%  Similarity=0.181  Sum_probs=72.3

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeC--CCCCCce--ecCcccccCHHHhhccCCCcEEEEecChhhHHHH-H-H
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT--PKKGGTE--HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA-I-L  117 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~Vn--P~~~g~~--i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~-v-~  117 (340)
                      ||.++|. |+||...+++|.+.||+++ ..|  |... +.  -.|.....|+.|+.+  ..|++++++|+....+. + .
T Consensus         7 kIgfIGL-G~MG~~mA~~L~~~G~~V~-v~dr~~~~~-~~l~~~G~~~~~s~~e~~~--~~dvvi~~l~~~~~~~~v~~~   81 (297)
T 4gbj_A            7 KIAFLGL-GNLGTPIAEILLEAGYELV-VWNRTASKA-EPLTKLGATVVENAIDAIT--PGGIVFSVLADDAAVEELFSM   81 (297)
T ss_dssp             EEEEECC-STTHHHHHHHHHHTTCEEE-EC--------CTTTTTTCEECSSGGGGCC--TTCEEEECCSSHHHHHHHSCH
T ss_pred             cEEEEec-HHHHHHHHHHHHHCCCeEE-EEeCCHHHH-HHHHHcCCeEeCCHHHHHh--cCCceeeeccchhhHHHHHHH
Confidence            5677799 9999999999999999954 444  4331 11  247788899999987  58999999998665432 2 2


Q ss_pred             HHHH-cCCcEEEEecCCCChhhHHHHHHHHhccCCcEEE-ccCC
Q 019500          118 EAME-AELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV-GPNC  159 (340)
Q Consensus       118 ea~~-~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi-GPNc  159 (340)
                      +... ..-..++|-.+-.+.+..+++.+.+ ++.|++++ .|-+
T Consensus        82 ~~~~~~~~~~iiid~sT~~p~~~~~~~~~~-~~~g~~~ldapVs  124 (297)
T 4gbj_A           82 ELVEKLGKDGVHVSMSTISPETSRQLAQVH-EWYGAHYVGAPIF  124 (297)
T ss_dssp             HHHHHHCTTCEEEECSCCCHHHHHHHHHHH-HHTTCEEEECCEE
T ss_pred             HHHhhcCCCeEEEECCCCChHHHHHHHHHH-HhcCCceecCCcC
Confidence            2222 2333345555555566666676666 67888877 4443

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.60  E-value=0.00014  Score=68.48  Aligned_cols=107  Identities=14%  Similarity=0.124  Sum_probs=72.5

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce-----ecCcccccCHHHhhccCCCcEEEEecChhh-HHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-----HLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAI  116 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~-----i~G~p~y~sl~dip~~~~vDlavi~vp~~~-v~~~v  116 (340)
                      .+|.|+|. |+||..++++|.+.|++++ ..|++.  +.     -.|...+.+++++.+  +.|++++++|... +.+++
T Consensus        10 ~~IgiIG~-G~mG~~~A~~l~~~G~~V~-~~dr~~--~~~~~~~~~g~~~~~~~~e~~~--~aDvVi~~vp~~~~~~~v~   83 (306)
T 3l6d_A           10 FDVSVIGL-GAMGTIMAQVLLKQGKRVA-IWNRSP--GKAAALVAAGAHLCESVKAALS--ASPATIFVLLDNHATHEVL   83 (306)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSH--HHHHHHHHHTCEECSSHHHHHH--HSSEEEECCSSHHHHHHHH
T ss_pred             CeEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCH--HHHHHHHHCCCeecCCHHHHHh--cCCEEEEEeCCHHHHHHHh
Confidence            34666799 9999999999999999855 567654  21     137778889999886  4899999999764 66655


Q ss_pred             H--HHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          117 L--EAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       117 ~--ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                      .  ......-..+++-++..+....+++.+.+ ++.|++++.
T Consensus        84 ~~~~l~~~~~g~ivid~st~~~~~~~~l~~~~-~~~g~~~vd  124 (306)
T 3l6d_A           84 GMPGVARALAHRTIVDYTTNAQDEGLALQGLV-NQAGGHYVK  124 (306)
T ss_dssp             TSTTHHHHTTTCEEEECCCCCTTHHHHHHHHH-HHTTCEEEE
T ss_pred             cccchhhccCCCEEEECCCCCHHHHHHHHHHH-HHcCCeEEe
Confidence            4  22222223344445555555556666555 567777764

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.59  E-value=6.1e-05  Score=72.59  Aligned_cols=112  Identities=14%  Similarity=0.220  Sum_probs=70.9

Q ss_pred             cccCcCCeEEEEeCCCCCcchHHHHHHHHcCCe-EEEeeCCCCCC------cee-cCcccccCHHHhhccCCCcEEEEec
Q 019500           36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGG------TEH-LGLPVFNTVAEAKAETKANASAIYV  107 (340)
Q Consensus        36 ~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~-vv~~VnP~~~g------~~i-~G~p~y~sl~dip~~~~vDlavi~v  107 (340)
                      ..+.-+++||+|+|+ |.+|+.+++.|.+ .++ .++.++++...      ..+ ..+.-..++.++..  +.|++|.++
T Consensus        10 ~~~~g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~--~~DvVi~~~   85 (365)
T 3abi_A           10 HHIEGRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMK--EFELVIGAL   85 (365)
T ss_dssp             ------CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHT--TCSEEEECC
T ss_pred             ccccCCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHh--CCCEEEEec
Confidence            445667889999999 9999999998865 455 33344442100      111 11111234666655  589999999


Q ss_pred             ChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEE
Q 019500          108 PPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (340)
Q Consensus       108 p~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi  155 (340)
                      |+.....+++.|++.|++. +-+ ++.. ++..++.+.+ +++|+.++
T Consensus        86 p~~~~~~v~~~~~~~g~~y-vD~-s~~~-~~~~~l~~~a-~~~g~~~i  129 (365)
T 3abi_A           86 PGFLGFKSIKAAIKSKVDM-VDV-SFMP-ENPLELRDEA-EKAQVTIV  129 (365)
T ss_dssp             CGGGHHHHHHHHHHHTCEE-EEC-CCCS-SCGGGGHHHH-HHTTCEEE
T ss_pred             CCcccchHHHHHHhcCcce-Eee-eccc-hhhhhhhhhh-ccCCceee
Confidence            9999999999999999987 333 3333 3344455554 67888877

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.57  E-value=0.00037  Score=64.25  Aligned_cols=107  Identities=15%  Similarity=0.119  Sum_probs=68.8

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC-CCCCCcee--cCcccccCHHHhhccCCCcEEEEecChhh-HHHHHH-
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEH--LGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAIL-  117 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn-P~~~g~~i--~G~p~y~sl~dip~~~~vDlavi~vp~~~-v~~~v~-  117 (340)
                      .+|.|+|+ |++|+.+++.|.+.|++++ .+| |... +.+  .|+..+.+++++.+  +.|++++++|... +.+++. 
T Consensus         4 m~i~iiG~-G~~G~~~a~~l~~~g~~V~-~~~~~~~~-~~~~~~g~~~~~~~~~~~~--~~D~vi~~vp~~~~~~~v~~~   78 (295)
T 1yb4_A            4 MKLGFIGL-GIMGSPMAINLARAGHQLH-VTTIGPVA-DELLSLGAVNVETARQVTE--FADIIFIMVPDTPQVEDVLFG   78 (295)
T ss_dssp             CEEEECCC-STTHHHHHHHHHHTTCEEE-ECCSSCCC-HHHHTTTCBCCSSHHHHHH--TCSEEEECCSSHHHHHHHHHS
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhCCCEEE-EEcCHHHH-HHHHHcCCcccCCHHHHHh--cCCEEEEECCCHHHHHHHHhC
Confidence            46888898 9999999999999999854 455 3221 111  37778889998776  5899999998876 455554 


Q ss_pred             --HHHHc-CCcEE-EEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          118 --EAMEA-ELDLV-VCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       118 --ea~~~-Gvk~v-vi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                        +..+. .-..+ +..+++ .....+++.+.+ ++.++++++
T Consensus        79 ~~~l~~~l~~~~~vv~~s~~-~~~~~~~l~~~~-~~~g~~~~~  119 (295)
T 1yb4_A           79 EHGCAKTSLQGKTIVDMSSI-SPIETKRFAQRV-NEMGADYLD  119 (295)
T ss_dssp             TTSSTTSCCTTEEEEECSCC-CHHHHHHHHHHH-HTTTEEEEE
T ss_pred             chhHhhcCCCCCEEEECCCC-CHHHHHHHHHHH-HHcCCeEEE
Confidence              22211 12233 334445 333445565555 456787773

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=97.56  E-value=0.00016  Score=65.62  Aligned_cols=87  Identities=15%  Similarity=0.196  Sum_probs=67.0

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcC----CeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYG----TKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G----~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea  119 (340)
                      +|.|+|+ |+||+.+.+.|.+.|    +++. .+|++.  +. .|+.++.+..+..+  +.|++++++|+..+.+++++.
T Consensus         6 ~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v~-~~~~~~--~~-~g~~~~~~~~~~~~--~~D~vi~~v~~~~~~~v~~~l   78 (262)
T 2rcy_A            6 KLGFMGL-GQMGSALAHGIANANIIKKENLF-YYGPSK--KN-TTLNYMSSNEELAR--HCDIIVCAVKPDIAGSVLNNI   78 (262)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTSSCGGGEE-EECSSC--CS-SSSEECSCHHHHHH--HCSEEEECSCTTTHHHHHHHS
T ss_pred             EEEEECc-CHHHHHHHHHHHHCCCCCCCeEE-EEeCCc--cc-CceEEeCCHHHHHh--cCCEEEEEeCHHHHHHHHHHH
Confidence            5777799 999999999999888    4544 677665  23 68888888888765  489999999999999888876


Q ss_pred             HHc-CCcEEEEecCCCChh
Q 019500          120 MEA-ELDLVVCITEGIPQH  137 (340)
Q Consensus       120 ~~~-Gvk~vvi~t~Gf~e~  137 (340)
                      ... .-+.++..++|++.+
T Consensus        79 ~~~l~~~~vv~~~~gi~~~   97 (262)
T 2rcy_A           79 KPYLSSKLLISICGGLNIG   97 (262)
T ss_dssp             GGGCTTCEEEECCSSCCHH
T ss_pred             HHhcCCCEEEEECCCCCHH
Confidence            543 223567778898764

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.54  E-value=0.00014  Score=66.46  Aligned_cols=93  Identities=17%  Similarity=0.162  Sum_probs=67.8

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~---i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e  118 (340)
                      ++|.|+|+ |++|+.+++.+.+.|++++..++++... +.   -.|+.++.+++++.+  +.|++++++|+..+.+++++
T Consensus        11 m~i~iiG~-G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~Dvvi~av~~~~~~~v~~~   87 (266)
T 3d1l_A           11 TPIVLIGA-GNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNP--YAKLYIVSLKDSAFAELLQG   87 (266)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCS--CCSEEEECCCHHHHHHHHHH
T ss_pred             CeEEEEcC-CHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhc--CCCEEEEecCHHHHHHHHHH
Confidence            35777799 9999999999998899856577765410 11   137778888888765  59999999999998888877


Q ss_pred             HHHcC--CcEEEEecCCCChhh
Q 019500          119 AMEAE--LDLVVCITEGIPQHD  138 (340)
Q Consensus       119 a~~~G--vk~vvi~t~Gf~e~~  138 (340)
                      +.+.-  =+.++..++|++.+.
T Consensus        88 l~~~~~~~~ivv~~s~~~~~~~  109 (266)
T 3d1l_A           88 IVEGKREEALMVHTAGSIPMNV  109 (266)
T ss_dssp             HHTTCCTTCEEEECCTTSCGGG
T ss_pred             HHhhcCCCcEEEECCCCCchHH
Confidence            65421  134556677887544

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.51  E-value=0.0002  Score=66.35  Aligned_cols=108  Identities=14%  Similarity=0.080  Sum_probs=71.7

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccCCCcEEEEecChh-hHHHHH---
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAI---  116 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~~vDlavi~vp~~-~v~~~v---  116 (340)
                      +|.|+|+ |+||..+.++|.+.|+++. ..|++... +.  -.|.....+++++.+  +.|++++++|.. .+.+++   
T Consensus         3 ~I~iiG~-G~mG~~~a~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~advvi~~v~~~~~~~~v~~~~   78 (287)
T 3pdu_A            3 TYGFLGL-GIMGGPMAANLVRAGFDVT-VWNRNPAKCAPLVALGARQASSPAEVCA--ACDITIAMLADPAAAREVCFGA   78 (287)
T ss_dssp             CEEEECC-STTHHHHHHHHHHHTCCEE-EECSSGGGGHHHHHHTCEECSCHHHHHH--HCSEEEECCSSHHHHHHHHHST
T ss_pred             eEEEEcc-CHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHCCCeecCCHHHHHH--cCCEEEEEcCCHHHHHHHHcCc
Confidence            4667798 9999999999999999855 56665410 11  147788889999876  489999999986 566665   


Q ss_pred             HHHHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          117 LEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       117 ~ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                      ++..+. .-..+++-++.......+++.+.+ ++.|+.++.
T Consensus        79 ~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~-~~~g~~~~~  118 (287)
T 3pdu_A           79 NGVLEGIGGGRGYIDMSTVDDETSTAIGAAV-TARGGRFLE  118 (287)
T ss_dssp             TCGGGTCCTTCEEEECSCCCHHHHHHHHHHH-HHTTCEEEE
T ss_pred             hhhhhcccCCCEEEECCCCCHHHHHHHHHHH-HHcCCEEEE
Confidence            333332 122344445555555555565555 456777664

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.51  E-value=0.00034  Score=64.78  Aligned_cols=108  Identities=12%  Similarity=0.189  Sum_probs=70.6

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccCCCcEEEEecC-hhhHHHHH--
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVP-PPFAAAAI--  116 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~~vDlavi~vp-~~~v~~~v--  116 (340)
                      ++|.|+|+ |.+|..+++.|.+.|+++. .+|++... +.  -.|+..+.+++++.+  +.|++++++| +..+.+++  
T Consensus         6 m~i~iiG~-G~~G~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~D~vi~~v~~~~~~~~~~~~   81 (299)
T 1vpd_A            6 MKVGFIGL-GIMGKPMSKNLLKAGYSLV-VSDRNPEAIADVIAAGAETASTAKAIAE--QCDVIITMLPNSPHVKEVALG   81 (299)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTTCEECSSHHHHHH--HCSEEEECCSSHHHHHHHHHS
T ss_pred             ceEEEECc-hHHHHHHHHHHHhCCCEEE-EEeCCHHHHHHHHHCCCeecCCHHHHHh--CCCEEEEECCCHHHHHHHHhC
Confidence            46788898 9999999999999999854 66765310 11  137788889988765  4899999999 55566666  


Q ss_pred             -HHHH---HcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEcc
Q 019500          117 -LEAM---EAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGP  157 (340)
Q Consensus       117 -~ea~---~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGP  157 (340)
                       ++..   +.|. .++..++|.+ ...+++.+.+ .+.|+.++..
T Consensus        82 ~~~l~~~l~~~~-~vv~~s~~~~-~~~~~l~~~~-~~~g~~~~~~  123 (299)
T 1vpd_A           82 ENGIIEGAKPGT-VLIDMSSIAP-LASREISDAL-KAKGVEMLDA  123 (299)
T ss_dssp             TTCHHHHCCTTC-EEEECSCCCH-HHHHHHHHHH-HTTTCEEEEC
T ss_pred             cchHhhcCCCCC-EEEECCCCCH-HHHHHHHHHH-HHcCCeEEEe
Confidence             3332   2332 3444555553 3344555554 4557776653

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.50  E-value=0.00026  Score=65.48  Aligned_cols=109  Identities=15%  Similarity=0.099  Sum_probs=70.9

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc--CCeEEEeeCCCCCC-cee--cCc--ccccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-TEH--LGL--PVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~--G~~vv~~VnP~~~g-~~i--~G~--p~y~sl~dip~~~~vDlavi~vp~~~v~~~  115 (340)
                      .+|.|+|+ |+||..+++.|.+.  |++++ .+|++... +..  .|.  ..+.+++++.+  +.|++++++|+..+.++
T Consensus         7 ~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~--~aDvVilavp~~~~~~v   82 (290)
T 3b1f_A            7 KTIYIAGL-GLIGASLALGIKRDHPHYKIV-GYNRSDRSRDIALERGIVDEATADFKVFAA--LADVIILAVPIKKTIDF   82 (290)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCTTSEEE-EECSSHHHHHHHHHTTSCSEEESCTTTTGG--GCSEEEECSCHHHHHHH
T ss_pred             ceEEEEee-CHHHHHHHHHHHhCCCCcEEE-EEcCCHHHHHHHHHcCCcccccCCHHHhhc--CCCEEEEcCCHHHHHHH
Confidence            46778898 99999999999887  56644 67765310 111  344  34567776655  48999999999999999


Q ss_pred             HHHHHHc--CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          116 ILEAMEA--ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       116 v~ea~~~--Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                      +++....  .-+.+++..++......+.+.+.. .+.++++++
T Consensus        83 ~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l-~~~~~~~v~  124 (290)
T 3b1f_A           83 IKILADLDLKEDVIITDAGSTKYEIVRAAEYYL-KDKPVQFVG  124 (290)
T ss_dssp             HHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHH-TTSSCEEEE
T ss_pred             HHHHHhcCCCCCCEEEECCCCchHHHHHHHHhc-cccCCEEEE
Confidence            8887554  233445444454433334555554 334778875

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.48  E-value=0.00013  Score=66.38  Aligned_cols=91  Identities=11%  Similarity=0.119  Sum_probs=66.2

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCcccccCHHHhhccCCCcEEEEecChhhHHHHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAIL  117 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~---i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~  117 (340)
                      +++|.|+|+ |++|+.+++.|.+.|+++ ..+|++... +.   -.|+..+.+++++.+  ++|++++++|+..+.++++
T Consensus         3 ~m~i~iiG~-G~mG~~~a~~l~~~g~~v-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~D~Vi~~v~~~~~~~v~~   78 (259)
T 2ahr_A            3 AMKIGIIGV-GKMASAIIKGLKQTPHEL-IISGSSLERSKEIAEQLALPYAMSHQDLID--QVDLVILGIKPQLFETVLK   78 (259)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHTTSSCEE-EEECSSHHHHHHHHHHHTCCBCSSHHHHHH--TCSEEEECSCGGGHHHHHT
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhCCCeE-EEECCCHHHHHHHHHHcCCEeeCCHHHHHh--cCCEEEEEeCcHhHHHHHH
Confidence            357888898 999999999999888764 467765410 11   237888899988876  5999999999998888887


Q ss_pred             HHHHcCCcEEEEecCCCChhh
Q 019500          118 EAMEAELDLVVCITEGIPQHD  138 (340)
Q Consensus       118 ea~~~Gvk~vvi~t~Gf~e~~  138 (340)
                      ++. .|. .++-.+.|++.+.
T Consensus        79 ~l~-~~~-~vv~~~~~~~~~~   97 (259)
T 2ahr_A           79 PLH-FKQ-PIISMAAGISLQR   97 (259)
T ss_dssp             TSC-CCS-CEEECCTTCCHHH
T ss_pred             Hhc-cCC-EEEEeCCCCCHHH
Confidence            643 443 4444556887544

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.48  E-value=0.00052  Score=65.02  Aligned_cols=98  Identities=13%  Similarity=0.099  Sum_probs=68.1

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCC--eEEEeeCCCCCCce-----ecCc--ccccCHHH-hhccCCCcEEEEecChhh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTE-----HLGL--PVFNTVAE-AKAETKANASAIYVPPPF  111 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~--~vv~~VnP~~~g~~-----i~G~--p~y~sl~d-ip~~~~vDlavi~vp~~~  111 (340)
                      ..+|.|+|+ |.||..+++.|.+.|+  +++ .+|++.  +.     -.|+  ..+.++++ +..  +.|++++++|+..
T Consensus        33 ~~kI~IIG~-G~mG~slA~~l~~~G~~~~V~-~~dr~~--~~~~~a~~~G~~~~~~~~~~~~~~~--~aDvVilavp~~~  106 (314)
T 3ggo_A           33 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIY-GYDINP--ESISKAVDLGIIDEGTTSIAKVEDF--SPDFVMLSSPVRT  106 (314)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHHTTCCSEEE-EECSCH--HHHHHHHHTTSCSEEESCTTGGGGG--CCSEEEECSCGGG
T ss_pred             CCEEEEEee-CHHHHHHHHHHHhCCCCCEEE-EEECCH--HHHHHHHHCCCcchhcCCHHHHhhc--cCCEEEEeCCHHH
Confidence            356888898 9999999999999998  644 777764  22     1344  45677887 555  5899999999999


Q ss_pred             HHHHHHHHHHc-CCcEEEEecCCCChhhHHHHHHH
Q 019500          112 AAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKAA  145 (340)
Q Consensus       112 v~~~v~ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~  145 (340)
                      ..+++++.... .-..+|+-.++......+++.+.
T Consensus       107 ~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~  141 (314)
T 3ggo_A          107 FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENI  141 (314)
T ss_dssp             HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHH
T ss_pred             HHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHh
Confidence            99999888764 33444443444443334445444

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=97.45  E-value=0.00026  Score=68.62  Aligned_cols=160  Identities=15%  Similarity=0.056  Sum_probs=96.8

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHc--C--CeEEEeeCCCCCCcee---c-CcccccCHHHhhccC-------------
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEY--G--TKMVGGVTPKKGGTEH---L-GLPVFNTVAEAKAET-------------   98 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~--G--~~vv~~VnP~~~g~~i---~-G~p~y~sl~dip~~~-------------   98 (340)
                      ++.++|.|+|+ |.+|+.+++.+.+.  |  +++++..+.+.  ..+   + |++.|.+..++.+..             
T Consensus         2 ~k~i~vgIiG~-G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~--~~~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~   78 (358)
T 1ebf_A            2 TKVVNVAVIGA-GVVGSAFLDQLLAMKSTITYNLVLLAEAER--SLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAH   78 (358)
T ss_dssp             CSEEEEEEECC-SHHHHHHHHHHHHCCCSSEEEEEEEECSSB--EEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHH
T ss_pred             CceEEEEEEec-CHHHHHHHHHHHhcCCCCCEEEEEEEECCh--hhhccccCCCCccccHHHHHhcccCCCCCHHHHHHH
Confidence            35688999999 99999999998875  2  56777777543  222   1 677777777665421             


Q ss_pred             -----CCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCC-CC--hhhHHHHHHHHhccCCcEEEccCCCCcccCC--Cc
Q 019500           99 -----KANASAIYVPPPFAAAAILEAMEAELDLVVCITEG-IP--QHDMVRVKAALNNQSKTRLVGPNCPGVIKPG--EC  168 (340)
Q Consensus        99 -----~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~G-f~--e~~~~~l~~~aar~~girviGPNc~Gi~~p~--~~  168 (340)
                           .+|++++|+|...+.+...+|+++|.+. +....+ ++  .++..+|. ++ +++|+.+.=.-+.|--.|.  .+
T Consensus        79 ~~~~~~~DvVV~~t~~~~~a~~~~~AL~aGkhV-VtaNkkpla~~~~~~~eL~-~A-~~~gv~~~~Ea~vg~giPii~~l  155 (358)
T 1ebf_A           79 LKTSPKPVILVDNTSSAYIAGFYTKFVENGISI-ATPNKKAFSSDLATWKALF-SN-KPTNGFVYHEATVGAGLPIISFL  155 (358)
T ss_dssp             HTTCSSCEEEEECSCCHHHHTTHHHHHHTTCEE-ECCCCGGGSSCHHHHHHHT-CC-CTTCCCEECGGGTTTTSSCHHHH
T ss_pred             hhhccCCcEEEEcCCChHHHHHHHHHHHCCCeE-EecCcccccCCHHHHHHHH-HH-HHcCCEEEEccccccCCcHHHHH
Confidence                 2379999999887777778999999875 311122 33  24456676 54 8888776533333333343  11


Q ss_pred             ccccCCCCCCCCCcEEEEec--ChHHHHHHHHHHH---hCCCCceEEe
Q 019500          169 KIGIMPGYIHKPGRIGIVSR--SGTLTYEAVFQTT---AVGLGQSTCV  211 (340)
Q Consensus       169 ~~~~~~~~~~~~G~valvSQ--SG~l~~~~~~~~~---~~giG~S~~v  211 (340)
                      +-...     .-+.|.-|..  ||+.. .++....   +.|..|+.++
T Consensus       156 ~~~l~-----~G~~I~~I~GIlnGT~n-yil~~m~~~~~~g~~f~~~l  197 (358)
T 1ebf_A          156 REIIQ-----TGDEVEKIEGIFSGTLS-YIFNEFSTSQANDVKFSDVV  197 (358)
T ss_dssp             HHHHH-----HTCCEEEEEEECCHHHH-HHHHHHSCSSCCCCCHHHHH
T ss_pred             HHHHH-----cCCCeEEEEEEEeecce-eeecccccccccCCCHHHHH
Confidence            11110     1124544433  67764 4555443   4566666554

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=97.43  E-value=0.00045  Score=62.83  Aligned_cols=100  Identities=15%  Similarity=0.115  Sum_probs=67.8

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee-----cCcccccCHHHhhccCCCcEEEEecChhhHHHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-----LGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i-----~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e  118 (340)
                      +|.|+|+ |+||..+.++|.+.|++++ ..|+....+..     .|+.  .+++++.+  +.|++++++|+....+.+.+
T Consensus         2 ~I~iIG~-G~mG~~la~~l~~~g~~V~-~~~~~~~~~~~~~~~~~g~~--~~~~~~~~--~aDvvi~~v~~~~~~~~~~~   75 (264)
T 1i36_A            2 RVGFIGF-GEVAQTLASRLRSRGVEVV-TSLEGRSPSTIERARTVGVT--ETSEEDVY--SCPVVISAVTPGVALGAARR   75 (264)
T ss_dssp             EEEEESC-SHHHHHHHHHHHHTTCEEE-ECCTTCCHHHHHHHHHHTCE--ECCHHHHH--TSSEEEECSCGGGHHHHHHH
T ss_pred             eEEEEec-hHHHHHHHHHHHHCCCeEE-EeCCccCHHHHHHHHHCCCc--CCHHHHHh--cCCEEEEECCCHHHHHHHHH
Confidence            5677798 9999999999999999866 46763210111     3555  67777665  58999999999877777776


Q ss_pred             HHHcCCcEEEEecCCCChhhHHHHHHHHhccCC
Q 019500          119 AMEAELDLVVCITEGIPQHDMVRVKAALNNQSK  151 (340)
Q Consensus       119 a~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~g  151 (340)
                      ..+.--+ +++-.++......+++.+.+ .+.|
T Consensus        76 ~~~~~~~-~vi~~s~~~~~~~~~l~~~~-~~~g  106 (264)
T 1i36_A           76 AGRHVRG-IYVDINNISPETVRMASSLI-EKGG  106 (264)
T ss_dssp             HHTTCCS-EEEECSCCCHHHHHHHHHHC-SSSE
T ss_pred             HHHhcCc-EEEEccCCCHHHHHHHHHHH-hhCC
Confidence            6554334 55555666655556666655 3433

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.40  E-value=0.0006  Score=63.10  Aligned_cols=108  Identities=10%  Similarity=0.159  Sum_probs=70.0

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee--cCcccccCHHHhhccCCCcEEEEecChh-hHHHHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAIL  117 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i--~G~p~y~sl~dip~~~~vDlavi~vp~~-~v~~~v~  117 (340)
                      ..+|.|+|+ |.+|..+.+.|.+.|+++. .+|++... +.+  .|+..+.+++++.+  +.|++++++|.. .+.+++.
T Consensus         4 ~~~i~iiG~-G~~G~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~D~vi~~vp~~~~~~~v~~   79 (301)
T 3cky_A            4 SIKIGFIGL-GAMGKPMAINLLKEGVTVY-AFDLMEANVAAVVAQGAQACENNQKVAA--ASDIIFTSLPNAGIVETVMN   79 (301)
T ss_dssp             CCEEEEECC-CTTHHHHHHHHHHTTCEEE-EECSSHHHHHHHHTTTCEECSSHHHHHH--HCSEEEECCSSHHHHHHHHH
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHCCCeecCCHHHHHh--CCCEEEEECCCHHHHHHHHc
Confidence            356788898 9999999999999999854 66664310 111  37778889988776  489999999754 4556653


Q ss_pred             ---HHHH---cCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          118 ---EAME---AELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       118 ---ea~~---~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                         +..+   .| +.++..++|.+ ...+++.+.+ ++.+++++.
T Consensus        80 ~~~~l~~~l~~~-~~vv~~~~~~~-~~~~~l~~~~-~~~g~~~~~  121 (301)
T 3cky_A           80 GPGGVLSACKAG-TVIVDMSSVSP-SSTLKMAKVA-AEKGIDYVD  121 (301)
T ss_dssp             STTCHHHHSCTT-CEEEECCCCCH-HHHHHHHHHH-HHTTCEEEE
T ss_pred             CcchHhhcCCCC-CEEEECCCCCH-HHHHHHHHHH-HHcCCeEEE
Confidence               3322   23 23455566663 2334455544 345777763

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.39  E-value=0.00041  Score=64.96  Aligned_cols=109  Identities=12%  Similarity=0.107  Sum_probs=70.4

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccCCCcEEEEecC-hhhHHHHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVP-PPFAAAAILE  118 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~~vDlavi~vp-~~~v~~~v~e  118 (340)
                      .+|.|+|+ |++|..+++.|.+.|+++. .+|++... +.  -.|+.++.++.++.+  +.|++++++| +..+.+++.+
T Consensus        31 ~~I~iIG~-G~mG~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~DvVi~av~~~~~~~~v~~~  106 (316)
T 2uyy_A           31 KKIGFLGL-GLMGSGIVSNLLKMGHTVT-VWNRTAEKCDLFIQEGARLGRTPAEVVS--TCDITFACVSDPKAAKDLVLG  106 (316)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSGGGGHHHHHTTCEECSCHHHHHH--HCSEEEECCSSHHHHHHHHHS
T ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCEEE-EEeCCHHHHHHHHHcCCEEcCCHHHHHh--cCCEEEEeCCCHHHHHHHHcC
Confidence            45777798 9999999999999999854 66665410 11  146777888888765  4899999999 7777777654


Q ss_pred             HH---H-cCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          119 AM---E-AELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       119 a~---~-~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                      ..   + ..-..+++-.+.......+++.+.+ .+.+.++++
T Consensus       107 ~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~-~~~~~~~v~  147 (316)
T 2uyy_A          107 PSGVLQGIRPGKCYVDMSTVDADTVTELAQVI-VSRGGRFLE  147 (316)
T ss_dssp             TTCGGGGCCTTCEEEECSCCCHHHHHHHHHHH-HHTTCEEEE
T ss_pred             chhHhhcCCCCCEEEECCCCCHHHHHHHHHHH-HHcCCEEEE
Confidence            21   1 1222334434444444455555554 345777774

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=97.32  E-value=0.00044  Score=66.12  Aligned_cols=88  Identities=17%  Similarity=0.171  Sum_probs=65.3

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCC--CCc--eec------------------CcccccCHHHhhccC
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK--GGT--EHL------------------GLPVFNTVAEAKAET   98 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~--~g~--~i~------------------G~p~y~sl~dip~~~   98 (340)
                      +++|.|+|+ |.+|+.+++.+.+. ++++++..++..  .+.  +-.                  ++++|.+.+++..  
T Consensus         2 ~irVgIiG~-G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~--   78 (334)
T 2czc_A            2 KVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLE--   78 (334)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHT--
T ss_pred             CcEEEEEeE-hHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhcc--
Confidence            368889999 99999999998876 567776555432  100  011                  2367788888876  


Q ss_pred             CCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCC
Q 019500           99 KANASAIYVPPPFAAAAILEAMEAELDLVVCITEGI  134 (340)
Q Consensus        99 ~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf  134 (340)
                      ++|++++++|...+.+.++.++++|.+ ++ ++...
T Consensus        79 ~vDvV~~aTp~~~h~~~a~~~l~aGk~-Vi-~sap~  112 (334)
T 2czc_A           79 KVDIIVDATPGGIGAKNKPLYEKAGVK-AI-FQGGE  112 (334)
T ss_dssp             TCSEEEECCSTTHHHHHHHHHHHHTCE-EE-ECTTS
T ss_pred             CCCEEEECCCccccHHHHHHHHHcCCc-eE-eeccc
Confidence            699999999999999999999999976 34 45444

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=97.32  E-value=0.00023  Score=71.72  Aligned_cols=124  Identities=11%  Similarity=0.136  Sum_probs=80.1

Q ss_pred             ccccCc-CCeEEEEeCCCCCcchHHHHHHHHc------CCeEEEeeCCCCCCc---eecCcccc----cCHHHhhccCCC
Q 019500           35 PAVFVD-KNTRVICQGITGKNGTFHTEQAIEY------GTKMVGGVTPKKGGT---EHLGLPVF----NTVAEAKAETKA  100 (340)
Q Consensus        35 ~~lf~p-~~iaViVvGasgk~G~~v~~~l~~~------G~~vv~~VnP~~~g~---~i~G~p~y----~sl~dip~~~~v  100 (340)
                      ...|.. +  +|.|+|. |+||..++++|++.      |++++...++.....   .-.|+...    .+++|+..  ..
T Consensus        48 ~~~L~GiK--kIgIIGl-GsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~--~A  122 (525)
T 3fr7_A           48 PEAFKGIK--QIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVS--GS  122 (525)
T ss_dssp             HHHTTTCS--EEEEECC-TTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHH--HC
T ss_pred             hHHhcCCC--EEEEEeE-hHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHh--cC
Confidence            344544 4  4556698 99999999999998      998664555432101   23576652    67888876  48


Q ss_pred             cEEEEecChhhHHHHHHHHHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcc
Q 019500          101 NASAIYVPPPFAAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVI  163 (340)
Q Consensus       101 Dlavi~vp~~~v~~~v~ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~  163 (340)
                      |++++++|+....+++++.... .-..++.++.||+-...++......+...+-.+-||+.|..
T Consensus       123 DVVILaVP~~~~~eVl~eI~p~LK~GaILs~AaGf~I~~le~~~i~~p~dv~VVrVmPNtPg~~  186 (525)
T 3fr7_A          123 DLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPS  186 (525)
T ss_dssp             SEEEECSCHHHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHHTTCCCCTTSEEEEEEESSCHHH
T ss_pred             CEEEECCChHHHHHHHHHHHHhcCCCCeEEEeCCCCHHHHhhhcccCCCCCcEEEEecCCCchh
Confidence            9999999999888888775543 23446789999964332210001111223445579998875

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=97.32  E-value=0.00058  Score=63.06  Aligned_cols=107  Identities=15%  Similarity=0.133  Sum_probs=69.7

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccCCCcEEEEecCh-hhHHHHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPP-PFAAAAILEA  119 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~~vDlavi~vp~-~~v~~~v~ea  119 (340)
                      +|.|+|+ |+||..+.+.|.+.|+++. .+|++... +.  -.|+.++.+++++..  +.|++++++|. ..+.+++.+.
T Consensus         2 ~i~iiG~-G~mG~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~Dvvi~~vp~~~~~~~v~~~~   77 (296)
T 2gf2_A            2 PVGFIGL-GNMGNPMAKNLMKHGYPLI-IYDVFPDACKEFQDAGEQVVSSPADVAE--KADRIITMLPTSINAIEAYSGA   77 (296)
T ss_dssp             CEEEECC-STTHHHHHHHHHHTTCCEE-EECSSTHHHHHHHTTTCEECSSHHHHHH--HCSEEEECCSSHHHHHHHHHST
T ss_pred             eEEEEec-cHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEeCCCHHHHHHHHhCc
Confidence            4667798 9999999999999998854 66665410 11  137778889988765  48999999965 4566666542


Q ss_pred             ---HH-cCCcEEEEecCCCChhhHHHHHHHHhccCCcEEE
Q 019500          120 ---ME-AELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (340)
Q Consensus       120 ---~~-~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi  155 (340)
                         .+ ..-..+++-++|.+.+..+++.+.+ ++.+..++
T Consensus        78 ~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~-~~~g~~~~  116 (296)
T 2gf2_A           78 NGILKKVKKGSLLIDSSTIDPAVSKELAKEV-EKMGAVFM  116 (296)
T ss_dssp             TSGGGTCCTTCEEEECSCCCHHHHHHHHHHH-HHTTCEEE
T ss_pred             hhHHhcCCCCCEEEECCCCCHHHHHHHHHHH-HHcCCEEE
Confidence               11 1122344457888776666665554 33455443

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.31  E-value=0.00061  Score=68.73  Aligned_cols=110  Identities=12%  Similarity=0.067  Sum_probs=72.1

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee-------cCcccccCHHHhhcc-CCCcEEEEecCh-hhH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH-------LGLPVFNTVAEAKAE-TKANASAIYVPP-PFA  112 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i-------~G~p~y~sl~dip~~-~~vDlavi~vp~-~~v  112 (340)
                      .+|.|+|+ |.||..++++|.+.|+++. ..|++... +.+       .|+....+++++.+. .++|++++++|+ ..+
T Consensus        11 ~~IgvIGl-G~MG~~lA~~La~~G~~V~-v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v   88 (497)
T 2p4q_A           11 ADFGLIGL-AVMGQNLILNAADHGFTVC-AYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPV   88 (497)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHH
T ss_pred             CCEEEEee-HHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHH
Confidence            34666799 9999999999999999865 66665410 111       367778899987752 138999999999 577


Q ss_pred             HHHHHHHHHcC-C-cEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          113 AAAILEAMEAE-L-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       113 ~~~v~ea~~~G-v-k~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                      .+++++....= - +.+|..+++.+ .+..++.+.+ ++.|+++++
T Consensus        89 ~~vl~~l~~~l~~g~iIId~s~~~~-~~~~~l~~~l-~~~g~~~v~  132 (497)
T 2p4q_A           89 DALINQIVPLLEKGDIIIDGGNSHF-PDSNRRYEEL-KKKGILFVG  132 (497)
T ss_dssp             HHHHHHHGGGCCTTCEEEECSCCCH-HHHHHHHHHH-HHTTCEEEE
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCh-hHHHHHHHHH-HHcCCceeC
Confidence            88887665431 1 23333455543 3344444444 456777664

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.29  E-value=0.00039  Score=54.54  Aligned_cols=86  Identities=15%  Similarity=0.068  Sum_probs=60.7

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcC-CeEEEeeCCCCCC-cee--cCcccc-------cCHHHhhccCCCcEEEEecChh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGG-TEH--LGLPVF-------NTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G-~~vv~~VnP~~~g-~~i--~G~p~y-------~sl~dip~~~~vDlavi~vp~~  110 (340)
                      ..+|+|+|+ |.+|+.+++.|.+.| ++++ .++++... +..  .++..+       .++.++.+  ++|+++.++|..
T Consensus         5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~-~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~d~vi~~~~~~   80 (118)
T 3ic5_A            5 RWNICVVGA-GKIGQMIAALLKTSSNYSVT-VADHDLAALAVLNRMGVATKQVDAKDEAGLAKALG--GFDAVISAAPFF   80 (118)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCSSEEEE-EEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTT--TCSEEEECSCGG
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhCCCceEE-EEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHc--CCCEEEECCCch
Confidence            457888899 999999999999999 7754 55543210 111  122221       23444444  599999999999


Q ss_pred             hHHHHHHHHHHcCCcEEEEecC
Q 019500          111 FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       111 ~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      ....+++.|.+.|++.+. +++
T Consensus        81 ~~~~~~~~~~~~g~~~~~-~~~  101 (118)
T 3ic5_A           81 LTPIIAKAAKAAGAHYFD-LTE  101 (118)
T ss_dssp             GHHHHHHHHHHTTCEEEC-CCS
T ss_pred             hhHHHHHHHHHhCCCEEE-ecC
Confidence            999999999999998743 554

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=97.28  E-value=0.0006  Score=65.63  Aligned_cols=90  Identities=12%  Similarity=0.053  Sum_probs=64.4

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcC-CeEEEeeCCCCCCceec-------Cc--ccccCHHHhhccCCCcEEEEecChhh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGGTEHL-------GL--PVFNTVAEAKAETKANASAIYVPPPF  111 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G-~~vv~~VnP~~~g~~i~-------G~--p~y~sl~dip~~~~vDlavi~vp~~~  111 (340)
                      +++|.|+|++|..|+.+++.|.+.. +++++..+....|..+.       |.  ..+.+++++ .  ++|+++.++|...
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~~-~--~vDvV~~a~g~~~   80 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEKL-E--PADILVLALPHGV   80 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGGC-C--CCSEEEECCCTTH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhHh-c--CCCEEEEcCCcHH
Confidence            4789999999999999999998764 57775555443333322       10  112233333 2  6999999999999


Q ss_pred             HHHHHHHHHHcCCcEEEEecCCCC
Q 019500          112 AAAAILEAMEAELDLVVCITEGIP  135 (340)
Q Consensus       112 v~~~v~ea~~~Gvk~vvi~t~Gf~  135 (340)
                      ..+.+..+.++|++ +|.+++-|.
T Consensus        81 s~~~a~~~~~aG~~-VId~Sa~~r  103 (345)
T 2ozp_A           81 FAREFDRYSALAPV-LVDLSADFR  103 (345)
T ss_dssp             HHHTHHHHHTTCSE-EEECSSTTS
T ss_pred             HHHHHHHHHHCCCE-EEEcCcccc
Confidence            99999999999998 466676664

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=97.27  E-value=0.00043  Score=61.87  Aligned_cols=92  Identities=15%  Similarity=0.102  Sum_probs=62.6

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCcccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~---i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      +..+|.|+|+ |++|..+++.|.+.|++++...+++... +.   -.|...+.+..+..+  +.|++++++|+..+.+++
T Consensus        22 ~mmkI~IIG~-G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~--~aDvVilavp~~~~~~v~   98 (220)
T 4huj_A           22 SMTTYAIIGA-GAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDAL--QADVVILAVPYDSIADIV   98 (220)
T ss_dssp             GSCCEEEEEC-HHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHT--TSSEEEEESCGGGHHHHH
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHh--cCCEEEEeCChHHHHHHH
Confidence            3457788897 9999999999999999876446665411 11   135555544444443  489999999999999988


Q ss_pred             HHHHHcCCcEEEEecCCCC
Q 019500          117 LEAMEAELDLVVCITEGIP  135 (340)
Q Consensus       117 ~ea~~~Gvk~vvi~t~Gf~  135 (340)
                      ++.....-+.++-.+.|+.
T Consensus        99 ~~l~~~~~~ivi~~~~g~~  117 (220)
T 4huj_A           99 TQVSDWGGQIVVDASNAID  117 (220)
T ss_dssp             TTCSCCTTCEEEECCCCBC
T ss_pred             HHhhccCCCEEEEcCCCCC
Confidence            7764322235565666763

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=97.26  E-value=0.00054  Score=65.06  Aligned_cols=90  Identities=14%  Similarity=0.074  Sum_probs=67.2

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHH-c-CCeEEEeeCCCCC--Cce---ecCccc-ccCHHHhhcc---CCCcEEEEecCh
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIE-Y-GTKMVGGVTPKKG--GTE---HLGLPV-FNTVAEAKAE---TKANASAIYVPP  109 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~-~-G~~vv~~VnP~~~--g~~---i~G~p~-y~sl~dip~~---~~vDlavi~vp~  109 (340)
                      +.++|.|+|+ |.+|+.+++.+.+ . +.++++.++++..  +..   -.|.+. +.+++++.+.   .++|++++++|.
T Consensus         3 ~~irVaIIG~-G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~   81 (312)
T 1nvm_B            3 QKLKVAIIGS-GNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSA   81 (312)
T ss_dssp             SCEEEEEECC-SHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCH
T ss_pred             CCCEEEEEcC-cHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCCh
Confidence            4578999996 9999999998865 4 6777777776532  122   356663 5678887542   359999999999


Q ss_pred             hhHHHHHHHHHHc--CCcEEEEecC
Q 019500          110 PFAAAAILEAMEA--ELDLVVCITE  132 (340)
Q Consensus       110 ~~v~~~v~ea~~~--Gvk~vvi~t~  132 (340)
                      +.+.+.+.+|+++  |.+. +..++
T Consensus        82 ~~h~~~a~~al~a~~Gk~V-i~ekp  105 (312)
T 1nvm_B           82 SAHVQNEALLRQAKPGIRL-IDLTP  105 (312)
T ss_dssp             HHHHHHHHHHHHHCTTCEE-EECST
T ss_pred             HHHHHHHHHHHHhCCCCEE-EEcCc
Confidence            9999999999999  9875 44444

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.25  E-value=0.0004  Score=64.96  Aligned_cols=109  Identities=16%  Similarity=0.122  Sum_probs=71.4

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce-----ecCccc-ccCHHHhhccCCCcEEEEecChh-hHH
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-----HLGLPV-FNTVAEAKAETKANASAIYVPPP-FAA  113 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~-----i~G~p~-y~sl~dip~~~~vDlavi~vp~~-~v~  113 (340)
                      +..+|.|+|+ |+||..++++|.+.|+++. ..|++.  +.     -.|... ..+++|+.+  ..|++++++|.. .+.
T Consensus         6 ~~~~I~iIG~-G~mG~~~a~~l~~~G~~V~-~~dr~~--~~~~~~~~~g~~~~~~~~~e~~~--~aDvvi~~vp~~~~~~   79 (303)
T 3g0o_A            6 TDFHVGIVGL-GSMGMGAARSCLRAGLSTW-GADLNP--QACANLLAEGACGAAASAREFAG--VVDALVILVVNAAQVR   79 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCH--HHHHHHHHTTCSEEESSSTTTTT--TCSEEEECCSSHHHHH
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCCeEE-EEECCH--HHHHHHHHcCCccccCCHHHHHh--cCCEEEEECCCHHHHH
Confidence            3456778899 9999999999999999855 666654  21     136555 778888876  589999999985 444


Q ss_pred             HHH---HHHHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          114 AAI---LEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       114 ~~v---~ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                      +++   ++..+. .-..+++-++.......+++.+.+ ++.|+.++.
T Consensus        80 ~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~-~~~g~~~~~  125 (303)
T 3g0o_A           80 QVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAAL-TALNLNMLD  125 (303)
T ss_dssp             HHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHH-HTTTCEEEE
T ss_pred             HHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHH-HHcCCeEEe
Confidence            444   332221 122345555555555555666555 566777664

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.23  E-value=0.00096  Score=61.18  Aligned_cols=106  Identities=10%  Similarity=-0.068  Sum_probs=66.3

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee--cCcccccCHHHhhccCCCcEEEEecChhh-HHHHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAILEA  119 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i--~G~p~y~sl~dip~~~~vDlavi~vp~~~-v~~~v~ea  119 (340)
                      +|.|+|+ |.+|..+++.|.+ |+++. .+|++... +.+  .|+..+. ++++.+  +.|++++++|... +.+++++.
T Consensus         3 ~i~iiG~-G~~G~~~a~~l~~-g~~V~-~~~~~~~~~~~~~~~g~~~~~-~~~~~~--~~D~vi~~v~~~~~~~~v~~~l   76 (289)
T 2cvz_A            3 KVAFIGL-GAMGYPMAGHLAR-RFPTL-VWNRTFEKALRHQEEFGSEAV-PLERVA--EARVIFTCLPTTREVYEVAEAL   76 (289)
T ss_dssp             CEEEECC-STTHHHHHHHHHT-TSCEE-EECSSTHHHHHHHHHHCCEEC-CGGGGG--GCSEEEECCSSHHHHHHHHHHH
T ss_pred             eEEEEcc-cHHHHHHHHHHhC-CCeEE-EEeCCHHHHHHHHHCCCcccC-HHHHHh--CCCEEEEeCCChHHHHHHHHHH
Confidence            4667799 9999999999999 99854 66765410 111  2555555 666554  4899999999765 66666655


Q ss_pred             HHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          120 MEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       120 ~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                      .+. .-..+++..+.......+++.+.+ ++.|+.++.
T Consensus        77 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~-~~~g~~~~~  113 (289)
T 2cvz_A           77 YPYLREGTYWVDATSGEPEASRRLAERL-REKGVTYLD  113 (289)
T ss_dssp             TTTCCTTEEEEECSCCCHHHHHHHHHHH-HTTTEEEEE
T ss_pred             HhhCCCCCEEEECCCCCHHHHHHHHHHH-HHcCCEEEE
Confidence            432 223444444444444445566655 455777663

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.22  E-value=0.0011  Score=62.40  Aligned_cols=107  Identities=12%  Similarity=0.154  Sum_probs=72.5

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHH-
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA-  119 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea-  119 (340)
                      +|.++|. |+||...+++|.+.||++. ..|..... +.  -.|.....|++|+.+  ..|+++.++|.....+.+-.- 
T Consensus         5 kIgfIGl-G~MG~~mA~~L~~~G~~v~-v~dr~~~~~~~l~~~Ga~~a~s~~e~~~--~~dvv~~~l~~~~~v~~V~~~~   80 (300)
T 3obb_A            5 QIAFIGL-GHMGAPMATNLLKAGYLLN-VFDLVQSAVDGLVAAGASAARSARDAVQ--GADVVISMLPASQHVEGLYLDD   80 (300)
T ss_dssp             EEEEECC-STTHHHHHHHHHHTTCEEE-EECSSHHHHHHHHHTTCEECSSHHHHHT--TCSEEEECCSCHHHHHHHHHSS
T ss_pred             EEEEeee-hHHHHHHHHHHHhCCCeEE-EEcCCHHHHHHHHHcCCEEcCCHHHHHh--cCCceeecCCchHHHHHHHhch
Confidence            5667799 9999999999999999854 55554310 11  257888899999987  599999999986654443321 


Q ss_pred             --HHcCC--cEEEEecCCCChhhHHHHHHHHhccCCcEEE
Q 019500          120 --MEAEL--DLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (340)
Q Consensus       120 --~~~Gv--k~vvi~t~Gf~e~~~~~l~~~aar~~girvi  155 (340)
                        +..+.  ..+||-.+-.+.++.+++.+.+ +++|+.++
T Consensus        81 ~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~-~~~G~~~l  119 (300)
T 3obb_A           81 DGLLAHIAPGTLVLECSTIAPTSARKIHAAA-RERGLAML  119 (300)
T ss_dssp             SSSTTSCCC-CEEEECSCCCHHHHHHHHHHH-HTTTCEEE
T ss_pred             hhhhhcCCCCCEEEECCCCCHHHHHHHHHHH-HHcCCEEE
Confidence              11111  2344444445566667777766 67888877

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.21  E-value=0.00088  Score=66.98  Aligned_cols=109  Identities=17%  Similarity=0.128  Sum_probs=71.2

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee--c----CcccccCHHHhhcc-CCCcEEEEecCh-hhHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--L----GLPVFNTVAEAKAE-TKANASAIYVPP-PFAAA  114 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i--~----G~p~y~sl~dip~~-~~vDlavi~vp~-~~v~~  114 (340)
                      +|.|+|+ |.||+.++++|.+.|+++. ..|++... +.+  .    |+..+.+++++.+. .++|++++++|+ ..+.+
T Consensus         7 ~IgvIG~-G~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~   84 (474)
T 2iz1_A            7 NFGVVGM-AVMGKNLALNVESRGYTVA-IYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDA   84 (474)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHH
T ss_pred             cEEEEee-HHHHHHHHHHHHhCCCEEE-EEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHH
Confidence            4667799 9999999999999999854 67765310 111  1    67788899998652 138999999999 46777


Q ss_pred             HHHHHHHc-CC-cEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          115 AILEAMEA-EL-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       115 ~v~ea~~~-Gv-k~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                      ++++.... .- +.++..+++.. .+..++.+.+ ++.|+++++
T Consensus        85 vl~~l~~~l~~g~iiId~s~~~~-~~~~~l~~~l-~~~g~~~v~  126 (474)
T 2iz1_A           85 TIKSLLPLLDIGDILIDGGNTHF-PDTMRRNAEL-ADSGINFIG  126 (474)
T ss_dssp             HHHHHGGGCCTTCEEEECSCCCH-HHHHHHHHHT-TTSSCEEEE
T ss_pred             HHHHHHhhCCCCCEEEECCCCCH-HHHHHHHHHH-HHCCCeEEC
Confidence            77665432 11 23344455553 3334455554 556777663

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.21  E-value=0.00059  Score=68.47  Aligned_cols=109  Identities=17%  Similarity=0.090  Sum_probs=71.8

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee--c----CcccccCHHHhhcc-CCCcEEEEecCh-hhHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--L----GLPVFNTVAEAKAE-TKANASAIYVPP-PFAAA  114 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i--~----G~p~y~sl~dip~~-~~vDlavi~vp~-~~v~~  114 (340)
                      +|.|+|+ |.||+.++++|.+.|+++. ..|++... +++  .    |+....+++++... .++|++++++|+ ..+.+
T Consensus        17 ~IgvIGl-G~MG~~lA~~La~~G~~V~-v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~   94 (480)
T 2zyd_A           17 QIGVVGM-AVMGRNLALNIESRGYTVS-IFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDA   94 (480)
T ss_dssp             SEEEECC-SHHHHHHHHHHHTTTCCEE-EECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHHHH
T ss_pred             eEEEEcc-HHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHHHH
Confidence            3566699 9999999999999999855 66765310 111  1    77788899887651 138999999999 57888


Q ss_pred             HHHHHHHcC-C-cEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          115 AILEAMEAE-L-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       115 ~v~ea~~~G-v-k~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                      ++++....- - ..+|..+.|... +..++.+.+ ++.|+++++
T Consensus        95 vl~~l~~~l~~g~iIId~s~g~~~-~t~~l~~~l-~~~g~~~v~  136 (480)
T 2zyd_A           95 AIDSLKPYLDKGDIIIDGGNTFFQ-DTIRRNREL-SAEGFNFIG  136 (480)
T ss_dssp             HHHHHGGGCCTTCEEEECSCCCHH-HHHHHHHHH-HHTTCEEEE
T ss_pred             HHHHHHhhcCCCCEEEECCCCCHH-HHHHHHHHH-HHCCCCeeC
Confidence            887765431 1 234445566543 333444444 455777663

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.21  E-value=0.00061  Score=65.52  Aligned_cols=107  Identities=14%  Similarity=0.081  Sum_probs=71.6

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce-----ecCcccccCHHHhhcc--CCCcEEEEecChhhHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-----HLGLPVFNTVAEAKAE--TKANASAIYVPPPFAAAA  115 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~-----i~G~p~y~sl~dip~~--~~vDlavi~vp~~~v~~~  115 (340)
                      .+|.|+|+ |.||..+++.|.+.|++++ ..|++.  +.     -.|+..+.+++++...  ...|++++++|+..+.++
T Consensus         9 ~kIgIIG~-G~mG~slA~~L~~~G~~V~-~~dr~~--~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~~~~~~v   84 (341)
T 3ktd_A            9 RPVCILGL-GLIGGSLLRDLHAANHSVF-GYNRSR--SGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPMTAIDSL   84 (341)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTCCEE-EECSCH--HHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCHHHHHHH
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCCEEE-EEeCCH--HHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCHHHHHHH
Confidence            35677798 9999999999999999865 677654  22     2466667788776541  137999999999999998


Q ss_pred             HHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          116 ILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       116 v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                      +++.....-..+|+-.++....-.+++.+..   .+.++++
T Consensus        85 l~~l~~~~~~~iv~Dv~Svk~~i~~~~~~~~---~~~~~v~  122 (341)
T 3ktd_A           85 LDAVHTHAPNNGFTDVVSVKTAVYDAVKARN---MQHRYVG  122 (341)
T ss_dssp             HHHHHHHCTTCCEEECCSCSHHHHHHHHHTT---CGGGEEC
T ss_pred             HHHHHccCCCCEEEEcCCCChHHHHHHHHhC---CCCcEec
Confidence            8887766444444445555543333343321   1355664

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.19  E-value=0.0013  Score=65.95  Aligned_cols=109  Identities=12%  Similarity=0.099  Sum_probs=70.8

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee-------cCcccccCHHHhhcc-CCCcEEEEecChh-hHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH-------LGLPVFNTVAEAKAE-TKANASAIYVPPP-FAA  113 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i-------~G~p~y~sl~dip~~-~~vDlavi~vp~~-~v~  113 (340)
                      +|.|+|+ |.||..++.+|.+.|+++. .+|++... +.+       .|+..+.+++++.+. .++|++++++|+. .+.
T Consensus         4 ~IgvIG~-G~mG~~lA~~La~~G~~V~-v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~   81 (482)
T 2pgd_A            4 DIALIGL-AVMGQNLILNMNDHGFVVC-AFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD   81 (482)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred             eEEEECh-HHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHH
Confidence            4667798 9999999999999999854 66765410 111       457778899988631 1489999999995 778


Q ss_pred             HHHHHHHHc-CC-cEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          114 AAILEAMEA-EL-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       114 ~~v~ea~~~-Gv-k~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                      +++++.... .- +.+|..+++... +..++.+.+ ++.|+.+++
T Consensus        82 ~vl~~l~~~l~~g~iII~~s~~~~~-~~~~l~~~l-~~~g~~~v~  124 (482)
T 2pgd_A           82 NFIEKLVPLLDIGDIIIDGGNSEYR-DTMRRCRDL-KDKGILFVG  124 (482)
T ss_dssp             HHHHHHHHHCCTTCEEEECSCCCHH-HHHHHHHHH-HHTTCEEEE
T ss_pred             HHHHHHHhhcCCCCEEEECCCCCHH-HHHHHHHHH-HHcCCeEeC
Confidence            888766543 11 234445556543 333444444 345777653

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.18  E-value=0.00088  Score=63.35  Aligned_cols=107  Identities=13%  Similarity=0.051  Sum_probs=73.1

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcC-CeEEEeeCCCCC--C--ce------ecCccccc-CHHHhhccCCCcEEEEecChh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKG--G--TE------HLGLPVFN-TVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G-~~vv~~VnP~~~--g--~~------i~G~p~y~-sl~dip~~~~vDlavi~vp~~  110 (340)
                      .+|.|+|+ |.||..++++|.+.| ++++ ..|++..  .  ++      -.|.  .. +++++.+  +.|++++++|+.
T Consensus        25 m~IgvIG~-G~mG~~lA~~L~~~G~~~V~-~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~--~aDvVi~avp~~   98 (317)
T 4ezb_A           25 TTIAFIGF-GEAAQSIAGGLGGRNAARLA-AYDLRFNDPAASGALRARAAELGV--EPLDDVAGIA--CADVVLSLVVGA   98 (317)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTTCSEEE-EECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGG--GCSEEEECCCGG
T ss_pred             CeEEEECc-cHHHHHHHHHHHHcCCCeEE-EEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHh--cCCEEEEecCCH
Confidence            46778898 999999999999999 8855 5554420  0  01      1355  66 7888776  489999999999


Q ss_pred             hHHHHHHHHHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          111 FAAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       111 ~v~~~v~ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                      ...+.+++..+. .-..+++-.+.......+++.+.+ ++.|++++.
T Consensus        99 ~~~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l-~~~g~~~~d  144 (317)
T 4ezb_A           99 ATKAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAI-ATGKGSFVE  144 (317)
T ss_dssp             GHHHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHH-HTSSCEEEE
T ss_pred             HHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHH-HHcCCeEEe
Confidence            998888766553 223445555666666566666655 456766543

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.18  E-value=0.00024  Score=67.33  Aligned_cols=90  Identities=19%  Similarity=0.231  Sum_probs=62.1

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee--cC-----------cccccCHHHhhccCCCcEEEEecC
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LG-----------LPVFNTVAEAKAETKANASAIYVP  108 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i--~G-----------~p~y~sl~dip~~~~vDlavi~vp  108 (340)
                      .+|.|+|+ |.||.....+|.+.|+++. .+|+.... +.+  .|           +++..+.++ .+  +.|++++++|
T Consensus        15 ~kI~iIG~-G~mG~ala~~L~~~G~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~--~aDvVil~vk   89 (335)
T 1z82_A           15 MRFFVLGA-GSWGTVFAQMLHENGEEVI-LWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IK--KEDILVIAIP   89 (335)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CC--TTEEEEECSC
T ss_pred             CcEEEECc-CHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hc--CCCEEEEECC
Confidence            45667799 9999999999999999855 66654300 111  12           456667777 44  5899999999


Q ss_pred             hhhHHHHHHHHHHcCCcEEEEecCCCChhh
Q 019500          109 PPFAAAAILEAMEAELDLVVCITEGIPQHD  138 (340)
Q Consensus       109 ~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~  138 (340)
                      +..+.+++++... .-+.+|.++.|+..++
T Consensus        90 ~~~~~~v~~~l~~-~~~~vv~~~nGi~~~~  118 (335)
T 1z82_A           90 VQYIREHLLRLPV-KPSMVLNLSKGIEIKT  118 (335)
T ss_dssp             GGGHHHHHTTCSS-CCSEEEECCCCCCTTT
T ss_pred             HHHHHHHHHHhCc-CCCEEEEEeCCCCCCc
Confidence            9988888876433 2235666777886543

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=97.17  E-value=0.00095  Score=64.17  Aligned_cols=92  Identities=11%  Similarity=0.084  Sum_probs=66.8

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCC---CCCceec-------C---ccccc--CHHHhhccCCCcEEE
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPK---KGGTEHL-------G---LPVFN--TVAEAKAETKANASA  104 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~---~~g~~i~-------G---~p~y~--sl~dip~~~~vDlav  104 (340)
                      .+++|.|+|++|..|..+.+.|.++ .+++......+   ..|+.+.       |   +++.+  +.+++.+  ++|+++
T Consensus         3 ~M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~--~~Dvvf   80 (337)
T 3dr3_A            3 AMLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSP--GVDVVF   80 (337)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCT--TCSEEE
T ss_pred             CceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhc--CCCEEE
Confidence            3578999999999999999998885 66766554433   3344332       2   12221  3444422  599999


Q ss_pred             EecChhhHHHHHHHHHHcCCcEEEEecCCCC
Q 019500          105 IYVPPPFAAAAILEAMEAELDLVVCITEGIP  135 (340)
Q Consensus       105 i~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~  135 (340)
                      .|+|.....+.+.++.++|++. |.+++-|.
T Consensus        81 ~a~p~~~s~~~~~~~~~~g~~v-IDlSa~fR  110 (337)
T 3dr3_A           81 LATAHEVSHDLAPQFLEAGCVV-FDLSGAFR  110 (337)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEE-EECSSTTS
T ss_pred             ECCChHHHHHHHHHHHHCCCEE-EEcCCccc
Confidence            9999999999999999999986 66888774

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.10  E-value=0.0021  Score=60.05  Aligned_cols=96  Identities=11%  Similarity=0.153  Sum_probs=65.2

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHHc-
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEA-  122 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~-  122 (340)
                      +|.|+|..|.||..+++.|.+.|+++. .++++.  +        .+..+...  +.|++++++|+..+.+++++.... 
T Consensus        23 ~I~iIGg~G~mG~~la~~l~~~G~~V~-~~~~~~--~--------~~~~~~~~--~aDvVilavp~~~~~~vl~~l~~~l   89 (298)
T 2pv7_A           23 KIVIVGGYGKLGGLFARYLRASGYPIS-ILDRED--W--------AVAESILA--NADVVIVSVPINLTLETIERLKPYL   89 (298)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCEE-EECTTC--G--------GGHHHHHT--TCSEEEECSCGGGHHHHHHHHGGGC
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCeEE-EEECCc--c--------cCHHHHhc--CCCEEEEeCCHHHHHHHHHHHHhhc
Confidence            577779339999999999999999855 677665  2        24556554  589999999999999999887542 


Q ss_pred             CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          123 ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       123 Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                      .-..+|+..++......+++.+.    .+.++++
T Consensus        90 ~~~~iv~~~~svk~~~~~~~~~~----~~~~~v~  119 (298)
T 2pv7_A           90 TENMLLADLTSVKREPLAKMLEV----HTGAVLG  119 (298)
T ss_dssp             CTTSEEEECCSCCHHHHHHHHHH----CSSEEEE
T ss_pred             CCCcEEEECCCCCcHHHHHHHHh----cCCCEEe
Confidence            22335555566654434444322    2356664

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=97.08  E-value=0.00061  Score=65.37  Aligned_cols=153  Identities=10%  Similarity=0.048  Sum_probs=91.8

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc---------CCeEEEeeCCCCCC-ceecCcccccCHHHhhccCCCcEEEEecChh-
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY---------GTKMVGGVTPKKGG-TEHLGLPVFNTVAEAKAETKANASAIYVPPP-  110 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~---------G~~vv~~VnP~~~g-~~i~G~p~y~sl~dip~~~~vDlavi~vp~~-  110 (340)
                      .++|.|+|+ |.+|+.+++.+.+.         ++++++..+.+... ..+.....|.+++++.   ++|++++++|.. 
T Consensus         3 ~irvgIiG~-G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~~~~~~~d~~~ll---~iDvVve~t~~~~   78 (332)
T 2ejw_A            3 ALKIALLGG-GTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIPQELLRAEPFDLL---EADLVVEAMGGVE   78 (332)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSCGGGEESSCCCCT---TCSEEEECCCCSH
T ss_pred             eeEEEEEcC-CHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccCcccccCCHHHHh---CCCEEEECCCCcH
Confidence            478889999 99999999888764         45677776655311 1232234677888887   499999999976 


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCC--CcccccCCCCCCCCCcEEEEe-
Q 019500          111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG--ECKIGIMPGYIHKPGRIGIVS-  187 (340)
Q Consensus       111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~--~~~~~~~~~~~~~~G~valvS-  187 (340)
                      .+.+.+++|+++|.+.+. .....-.++..+|.+++ +++.+++-+ + .|--.|.  .++ .      ...|.|.=|. 
T Consensus        79 ~a~~~~~~AL~aGKhVVt-aNkkpla~~~~eL~~~A-~~~~~~~Ea-~-vg~giPii~~l~-~------l~~~~I~~I~g  147 (332)
T 2ejw_A           79 APLRLVLPALEAGIPLIT-ANKALLAEAWESLRPFA-EEGLIYHEA-S-VMAGTPALSFLE-T------LRGSELLELHG  147 (332)
T ss_dssp             HHHHHHHHHHHTTCCEEE-CCHHHHHHSHHHHHHHH-HTTCEECGG-G-TTTTSSSHHHHH-H------HTTSEEEEEEE
T ss_pred             HHHHHHHHHHHcCCeEEE-CCchhHHHHHHHHHHHH-HhCCeEEEE-E-cccCCHHHHHHH-H------hcCCCcceEEE
Confidence            567899999999998633 11121113456677765 555333322 2 2211233  122 1      2335666553 


Q ss_pred             -cChHHHHHHHHHHHhCCCCceEEe
Q 019500          188 -RSGTLTYEAVFQTTAVGLGQSTCV  211 (340)
Q Consensus       188 -QSG~l~~~~~~~~~~~giG~S~~v  211 (340)
                       .+|+..+ ++.... .|..|+.++
T Consensus       148 I~nGT~ny-il~~m~-~g~~f~~~l  170 (332)
T 2ejw_A          148 ILNGTTLY-ILQEME-KGRTYAEAL  170 (332)
T ss_dssp             ECCHHHHH-HHHHHH-TTCCHHHHH
T ss_pred             EEeccccc-ccCccc-cCCCHHHHH
Confidence             3676643 444333 566666554

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.07  E-value=0.0016  Score=59.62  Aligned_cols=94  Identities=11%  Similarity=0.100  Sum_probs=64.8

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee-----cCcc--cccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-----LGLP--VFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i-----~G~p--~y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      +|.|+|+ |++|+.+++.|.+.|++++ .++++.  +..     .|++  .+.+++++ .  +.|++++++|+..+.+++
T Consensus         2 ~i~iiG~-G~~G~~~a~~l~~~g~~V~-~~~~~~--~~~~~~~~~g~~~~~~~~~~~~-~--~~D~vi~av~~~~~~~~~   74 (279)
T 2f1k_A            2 KIGVVGL-GLIGASLAGDLRRRGHYLI-GVSRQQ--STCEKAVERQLVDEAGQDLSLL-Q--TAKIIFLCTPIQLILPTL   74 (279)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCH--HHHHHHHHTTSCSEEESCGGGG-T--TCSEEEECSCHHHHHHHH
T ss_pred             EEEEEcC-cHHHHHHHHHHHHCCCEEE-EEECCH--HHHHHHHhCCCCccccCCHHHh-C--CCCEEEEECCHHHHHHHH
Confidence            5777898 9999999999999999754 667653  211     2442  46778887 4  599999999999999988


Q ss_pred             HHHHHc-CCcEEEEecCCCChhhHHHHHH
Q 019500          117 LEAMEA-ELDLVVCITEGIPQHDMVRVKA  144 (340)
Q Consensus       117 ~ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~  144 (340)
                      ++.... .-..+++-.++......+++.+
T Consensus        75 ~~l~~~~~~~~~vv~~~~~~~~~~~~~~~  103 (279)
T 2f1k_A           75 EKLIPHLSPTAIVTDVASVKTAIAEPASQ  103 (279)
T ss_dssp             HHHGGGSCTTCEEEECCSCCHHHHHHHHH
T ss_pred             HHHHhhCCCCCEEEECCCCcHHHHHHHHH
Confidence            876543 2233444445565444444443

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.05  E-value=0.0016  Score=65.51  Aligned_cols=111  Identities=12%  Similarity=0.071  Sum_probs=70.4

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee-----cC--cccccCHHHhhcc-CCCcEEEEecChh-hH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH-----LG--LPVFNTVAEAKAE-TKANASAIYVPPP-FA  112 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i-----~G--~p~y~sl~dip~~-~~vDlavi~vp~~-~v  112 (340)
                      .+|.|+|. |+||..++++|.+.|++++ ..|++... +.+     .|  +..+.+++|+.+. ..+|++++++|+. .+
T Consensus         5 ~kIgiIGl-G~MG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v   82 (484)
T 4gwg_A            5 ADIALIGL-AVMGQNLILNMNDHGFVVC-AFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAV   82 (484)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHH
T ss_pred             CEEEEECh-hHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHH
Confidence            45677799 9999999999999999855 66665410 111     13  2336789998752 2489999999995 67


Q ss_pred             HHHHHHHHHcC-Cc-EEEEecCCCChhhHHHHHHHHhccCCcEEEcc
Q 019500          113 AAAILEAMEAE-LD-LVVCITEGIPQHDMVRVKAALNNQSKTRLVGP  157 (340)
Q Consensus       113 ~~~v~ea~~~G-vk-~vvi~t~Gf~e~~~~~l~~~aar~~girviGP  157 (340)
                      .+++++....= -. .+|..+++. ..+..++.+.+ ++.|+.+++.
T Consensus        83 ~~vl~~l~~~L~~g~iIId~st~~-~~~t~~~~~~l-~~~Gi~fvd~  127 (484)
T 4gwg_A           83 DDFIEKLVPLLDTGDIIIDGGNSE-YRDTTRRCRDL-KAKGILFVGS  127 (484)
T ss_dssp             HHHHHHHGGGCCTTCEEEECSCCC-HHHHHHHHHHH-HHTTCEEEEE
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCCC-chHHHHHHHHH-HhhccccccC
Confidence            77777665432 22 333333444 33334444444 4568877754

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=97.04  E-value=0.0013  Score=63.40  Aligned_cols=90  Identities=17%  Similarity=0.118  Sum_probs=62.6

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEee-CCCCCCcee---cC-----------cc-ccc--CHHHhhccCCCc
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGV-TPKKGGTEH---LG-----------LP-VFN--TVAEAKAETKAN  101 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~V-nP~~~g~~i---~G-----------~p-~y~--sl~dip~~~~vD  101 (340)
                      ++++|.|+||+|.+|+.+++.|.+. .+++++.. ..+..|+.+   .+           .. .+.  +.+++ +  ++|
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~--~vD   79 (350)
T 2ep5_A            3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYEDH-K--DVD   79 (350)
T ss_dssp             CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGGG-T--TCS
T ss_pred             CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHHh-c--CCC
Confidence            4578999999999999999988876 45676544 232222322   11           11 122  23333 2  599


Q ss_pred             EEEEecChhhHHHHHHHHHHcCCcEEEEecCCC
Q 019500          102 ASAIYVPPPFAAAAILEAMEAELDLVVCITEGI  134 (340)
Q Consensus       102 lavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf  134 (340)
                      ++++++|.....+.+..+.++|++ +|-.++.|
T Consensus        80 vVf~atp~~~s~~~a~~~~~aG~~-VId~s~~~  111 (350)
T 2ep5_A           80 VVLSALPNELAESIELELVKNGKI-VVSNASPF  111 (350)
T ss_dssp             EEEECCCHHHHHHHHHHHHHTTCE-EEECSSTT
T ss_pred             EEEECCChHHHHHHHHHHHHCCCE-EEECCccc
Confidence            999999999999999999999999 45566555

>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*

Probab=97.03  E-value=0.0073  Score=59.16  Aligned_cols=123  Identities=15%  Similarity=0.153  Sum_probs=88.5

Q ss_pred             CCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEcc-CCCcHHHHHHHH
Q 019500          179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEI-GGTAEEDAAALI  257 (340)
Q Consensus       179 ~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~-~g~~~~~~~~f~  257 (340)
                      ..|+|++++-+|+++...+|.....|.-...++-+|+.+. .-.+.+.++.+..||+.++|++-+=+ +=+-..-++..+
T Consensus       262 l~G~Ig~~~nGaGlam~t~D~i~~~Gg~paNflDvgG~a~-~e~~~~al~~il~d~~v~~ilvni~ggi~~~d~vA~gii  340 (395)
T 2fp4_B          262 LDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVK-ESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGIT  340 (395)
T ss_dssp             CSSSEEEEESSHHHHHHHHHHHHHTTCCBCEEEECCSSCC-HHHHHHHHHHHHHCTTCCEEEEEEEESSSCHHHHHHHHH
T ss_pred             cCCeEEEEecCchHHHHHHHHHHHcCCCcCCcEEECCCCC-HHHHHHHHHHHhCCCCCCEEEEEecCCccCcHHHHHHHH
Confidence            4699999999999999999999999988888999988762 34567788999999999999975422 111112234444


Q ss_pred             HHhC---CCCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeec--CCHHHHHHHHHH
Q 019500          258 KESG---TEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVV--ESPAKIGAAMLE  331 (340)
Q Consensus       258 ~a~r---~~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v--~~~~el~~~~~~  331 (340)
                      ++++   .+||||+-..|.                             +.+.-...|++.|+-..  +|+++-...+.+
T Consensus       341 ~a~~~~~~~~Pivvrl~G~-----------------------------n~~~g~~~L~~~gl~~~~~~~~~~Aa~~~v~  390 (395)
T 2fp4_B          341 KACRELELKVPLVVRLEGT-----------------------------NVHEAQNILTNSGLPITSAVDLEDAAKKAVA  390 (395)
T ss_dssp             HHHHHHTCCSCEEEEEEET-----------------------------THHHHHHHHHHTCSCCEECSSHHHHHHHHHH
T ss_pred             HHHHhcCCCCeEEEEcCCC-----------------------------CHHHHHHHHHHCCCceEeCCCHHHHHHHHHH
Confidence            4443   689999865442                             22334678888887666  788777666554

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.03  E-value=0.003  Score=57.93  Aligned_cols=98  Identities=14%  Similarity=0.109  Sum_probs=65.6

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCC--eEEEeeCCCCCCce-----ecCcc--cccCHHHhhccCCCcEEEEecChhhHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTE-----HLGLP--VFNTVAEAKAETKANASAIYVPPPFAAA  114 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~--~vv~~VnP~~~g~~-----i~G~p--~y~sl~dip~~~~vDlavi~vp~~~v~~  114 (340)
                      +|.|+|+ |++|..+++.|.+.|+  +++ .+|++.  +.     -.|+.  .+.++++.... +.|++++++|+....+
T Consensus         3 ~I~iIG~-G~mG~~~a~~l~~~g~~~~V~-~~d~~~--~~~~~~~~~g~~~~~~~~~~~~~~~-~aDvVilavp~~~~~~   77 (281)
T 2g5c_A            3 NVLIVGV-GFMGGSFAKSLRRSGFKGKIY-GYDINP--ESISKAVDLGIIDEGTTSIAKVEDF-SPDFVMLSSPVRTFRE   77 (281)
T ss_dssp             EEEEESC-SHHHHHHHHHHHHTTCCSEEE-EECSCH--HHHHHHHHTTSCSEEESCGGGGGGT-CCSEEEECSCHHHHHH
T ss_pred             EEEEEec-CHHHHHHHHHHHhcCCCcEEE-EEeCCH--HHHHHHHHCCCcccccCCHHHHhcC-CCCEEEEcCCHHHHHH
Confidence            5677798 9999999999999888  654 677754  21     13443  35677665541 3899999999999999


Q ss_pred             HHHHHHHc-CCcEEEEecCCCChhhHHHHHHHH
Q 019500          115 AILEAMEA-ELDLVVCITEGIPQHDMVRVKAAL  146 (340)
Q Consensus       115 ~v~ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~a  146 (340)
                      ++++.... .-+.+++..++......+.+.+..
T Consensus        78 v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l  110 (281)
T 2g5c_A           78 IAKKLSYILSEDATVTDQGSVKGKLVYDLENIL  110 (281)
T ss_dssp             HHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH
T ss_pred             HHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhc
Confidence            88876543 333445445555444444555544

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=97.02  E-value=0.0017  Score=61.38  Aligned_cols=92  Identities=16%  Similarity=0.181  Sum_probs=65.5

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcC----CeEEEeeCCCCC--C-ce--ecCcccccCHHHhhccCCCcEEEEecChhhHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYG----TKMVGGVTPKKG--G-TE--HLGLPVFNTVAEAKAETKANASAIYVPPPFAA  113 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G----~~vv~~VnP~~~--g-~~--i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~  113 (340)
                      .+|.|+|+ |+||..++.+|.+.|    +++. .+|++..  . +.  -.|+.+..+..+..+  +.|++++++|+..+.
T Consensus        23 mkI~iIG~-G~mG~ala~~L~~~G~~~~~~V~-v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~--~aDvVilav~~~~~~   98 (322)
T 2izz_A           23 MSVGFIGA-GQLAFALAKGFTAAGVLAAHKIM-ASSPDMDLATVSALRKMGVKLTPHNKETVQ--HSDVLFLAVKPHIIP   98 (322)
T ss_dssp             CCEEEESC-SHHHHHHHHHHHHTTSSCGGGEE-EECSCTTSHHHHHHHHHTCEEESCHHHHHH--HCSEEEECSCGGGHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCCcceEE-EECCCccHHHHHHHHHcCCEEeCChHHHhc--cCCEEEEEeCHHHHH
Confidence            35777799 999999999999988    6654 6676541  0 11  247777778877765  489999999999999


Q ss_pred             HHHHHHHHc-CC-cEEEEecCCCChhh
Q 019500          114 AAILEAMEA-EL-DLVVCITEGIPQHD  138 (340)
Q Consensus       114 ~~v~ea~~~-Gv-k~vvi~t~Gf~e~~  138 (340)
                      +++++.... .- +.++-++.|++.+.
T Consensus        99 ~vl~~l~~~l~~~~ivvs~s~gi~~~~  125 (322)
T 2izz_A           99 FILDEIGADIEDRHIVVSCAAGVTISS  125 (322)
T ss_dssp             HHHHHHGGGCCTTCEEEECCTTCCHHH
T ss_pred             HHHHHHHhhcCCCCEEEEeCCCCCHHH
Confidence            998876542 11 34455567887543

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=97.02  E-value=0.0011  Score=63.72  Aligned_cols=87  Identities=14%  Similarity=0.154  Sum_probs=62.8

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCc----eecCcccccC-----------------HHHhhccCCC
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT----EHLGLPVFNT-----------------VAEAKAETKA  100 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~----~i~G~p~y~s-----------------l~dip~~~~v  100 (340)
                      ++|.|+|+ |++|+.+++.+.+. ++++++..++.....    .-.|+|.|.+                 ++++.+  ++
T Consensus         2 ikVgIiGa-G~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~--~v   78 (340)
T 1b7g_O            2 VNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIK--TS   78 (340)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHH--HC
T ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhc--CC
Confidence            67889999 99999999998876 567776655442100    0124555533                 334433  48


Q ss_pred             cEEEEecChhhHHHHHHHHHHcCCcEEEEecCC
Q 019500          101 NASAIYVPPPFAAAAILEAMEAELDLVVCITEG  133 (340)
Q Consensus       101 Dlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~G  133 (340)
                      |++++|+|.....+..+.+++.|++.+. .+.-
T Consensus        79 DvV~~aTp~~~s~~~a~~~~~aG~kvV~-~sa~  110 (340)
T 1b7g_O           79 DIVVDTTPNGVGAQYKPIYLQLQRNAIF-QGGE  110 (340)
T ss_dssp             SEEEECCSTTHHHHHHHHHHHTTCEEEE-CTTS
T ss_pred             CEEEECCCCchhHHHHHHHHHcCCeEEE-eCCC
Confidence            9999999999999999999999999744 5544

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.01  E-value=0.0016  Score=65.26  Aligned_cols=109  Identities=22%  Similarity=0.201  Sum_probs=69.9

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce---ecC-------cccccCHHHhhcc-CCCcEEEEecChh-
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLG-------LPVFNTVAEAKAE-TKANASAIYVPPP-  110 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~---i~G-------~p~y~sl~dip~~-~~vDlavi~vp~~-  110 (340)
                      +|.|+|+ |.||+.++.+|.+.|+++. .+|++... +.   -.|       +..+.+++++.+. .++|++++++|+. 
T Consensus         3 kIgVIG~-G~mG~~lA~~La~~G~~V~-v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~   80 (478)
T 1pgj_A            3 DVGVVGL-GVMGANLALNIAEKGFKVA-VFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGA   80 (478)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSH
T ss_pred             EEEEECh-HHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChH
Confidence            4667798 9999999999999999854 67765310 11   124       6677889887641 1389999999995 


Q ss_pred             hHHHHHHHHHHc-CC-cEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          111 FAAAAILEAMEA-EL-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       111 ~v~~~v~ea~~~-Gv-k~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                      .+.+++++.... .- +.+|..+.|.. .+..++.+.+ ++.|+.+++
T Consensus        81 ~v~~vl~~l~~~l~~g~iIId~sng~~-~~~~~l~~~l-~~~g~~~v~  126 (478)
T 1pgj_A           81 ATDSTIEQLKKVFEKGDILVDTGNAHF-KDQGRRAQQL-EAAGLRFLG  126 (478)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEECCCCCH-HHHHHHHHHH-HTTTCEEEE
T ss_pred             HHHHHHHHHHhhCCCCCEEEECCCCCh-HHHHHHHHHH-HHCCCeEEE
Confidence            677777765542 22 23344455653 3334444544 455766653

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=96.97  E-value=0.0012  Score=63.18  Aligned_cols=104  Identities=18%  Similarity=0.245  Sum_probs=66.1

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChh-hHHHHH----HH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAI----LE  118 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~-~v~~~v----~e  118 (340)
                      +|.|+|. |++|+.+++.+..+|++++ ..|+..  +...|...+.+++++..  ..|++++++|.. ....++    ..
T Consensus       166 ~vgIIG~-G~iG~~vA~~l~~~G~~V~-~~dr~~--~~~~g~~~~~~l~ell~--~aDvVil~vP~~~~t~~li~~~~l~  239 (333)
T 3ba1_A          166 RVGIIGL-GRIGLAVAERAEAFDCPIS-YFSRSK--KPNTNYTYYGSVVELAS--NSDILVVACPLTPETTHIINREVID  239 (333)
T ss_dssp             CEEEECC-SHHHHHHHHHHHTTTCCEE-EECSSC--CTTCCSEEESCHHHHHH--TCSEEEECSCCCGGGTTCBCHHHHH
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCEEE-EECCCc--hhccCceecCCHHHHHh--cCCEEEEecCCChHHHHHhhHHHHh
Confidence            4566699 9999999999999999865 677665  33346667789999876  489999999974 333333    12


Q ss_pred             HHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          119 AMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       119 a~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                      ..+.|. .++..+.|.. .+.+++.+++ ++.+++-.|
T Consensus       240 ~mk~ga-ilIn~srG~~-vd~~aL~~aL-~~g~i~ga~  274 (333)
T 3ba1_A          240 ALGPKG-VLINIGRGPH-VDEPELVSAL-VEGRLGGAG  274 (333)
T ss_dssp             HHCTTC-EEEECSCGGG-BCHHHHHHHH-HHTSSCEEE
T ss_pred             cCCCCC-EEEECCCCch-hCHHHHHHHH-HcCCCeEEE
Confidence            233332 3455555543 3334455554 444444333

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=96.97  E-value=0.00067  Score=61.54  Aligned_cols=87  Identities=17%  Similarity=0.165  Sum_probs=60.8

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcC-CeEEEeeCCCCCC-cee---cCcccccCHHHhhccCCCcEEEEecChhhHHHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGG-TEH---LGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G-~~vv~~VnP~~~g-~~i---~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e  118 (340)
                      +|.|+|+ |+||..+.+.|.+.| +++. .+|++... +.+   .|+.++.+..++.   +.|++++++|+..+.+++++
T Consensus         2 ~i~iiG~-G~mG~~~a~~l~~~g~~~v~-~~~r~~~~~~~~~~~~g~~~~~~~~~~~---~~D~vi~~v~~~~~~~v~~~   76 (263)
T 1yqg_A            2 NVYFLGG-GNMAAAVAGGLVKQGGYRIY-IANRGAEKRERLEKELGVETSATLPELH---SDDVLILAVKPQDMEAACKN   76 (263)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHCSCEEE-EECSSHHHHHHHHHHTCCEEESSCCCCC---TTSEEEECSCHHHHHHHHTT
T ss_pred             EEEEECc-hHHHHHHHHHHHHCCCCeEE-EECCCHHHHHHHHHhcCCEEeCCHHHHh---cCCEEEEEeCchhHHHHHHH
Confidence            5777898 999999999999889 7754 66765310 111   3777777776655   38999999999888888765


Q ss_pred             HHHcCCcEEEEecCCCCh
Q 019500          119 AMEAELDLVVCITEGIPQ  136 (340)
Q Consensus       119 a~~~Gvk~vvi~t~Gf~e  136 (340)
                      ... .-+.++-+++|++.
T Consensus        77 l~~-~~~ivv~~~~g~~~   93 (263)
T 1yqg_A           77 IRT-NGALVLSVAAGLSV   93 (263)
T ss_dssp             CCC-TTCEEEECCTTCCH
T ss_pred             hcc-CCCEEEEecCCCCH
Confidence            543 31234444578875

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.93  E-value=0.00018  Score=70.77  Aligned_cols=87  Identities=14%  Similarity=0.060  Sum_probs=64.2

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC--CCCCCceecCcccccCHHHhhc--cCCCcEEEEecChhhHHHH
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT--PKKGGTEHLGLPVFNTVAEAKA--ETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn--P~~~g~~i~G~p~y~sl~dip~--~~~vDlavi~vp~~~v~~~  115 (340)
                      .+..+|+|+|| |..|+.+++.+.+.|+++++.+|  |...|..+.|+|+|.. +++++  ..+++.+++++  ....++
T Consensus        50 ~~~~~v~IiGA-G~~G~~l~~~l~~~g~~ivgfiDdd~~~~g~~i~GipV~~~-~~l~~~~~~~~~~viiai--~~r~~i  125 (409)
T 2py6_A           50 GNATRLVILGT-KGFGAHLMNVRHERPCEVIAAVDDFRYHSGELYYGLPIIST-DRFTELATHDRDLVALNT--CRYDGP  125 (409)
T ss_dssp             GGGCEEEEECS-SSTHHHHHSCSSSCSSEEEEEECTTTTTSCCEETTEEEECH-HHHHHHHHTCTTEEEEEC--CCSHHH
T ss_pred             CCCCeEEEEeC-CHHHHHHHHHHHHCCCEEEEEEeCCcccccCEECCEEEECH-HHHHHHHhCCCCEEEEec--cHHHHH
Confidence            45567899999 88999999877777899888877  5555678999999974 44443  34678888888  344677


Q ss_pred             HHHHHHcCCcEEEEe
Q 019500          116 ILEAMEAELDLVVCI  130 (340)
Q Consensus       116 v~ea~~~Gvk~vvi~  130 (340)
                      ++.+.+.|++.+|.+
T Consensus       126 ~~~l~~~g~~~il~f  140 (409)
T 2py6_A          126 KRFFDQICRTHGIPH  140 (409)
T ss_dssp             HHHHHHHHHHTTCCE
T ss_pred             HHHHHhcCCCEEEec
Confidence            777777776654444

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=96.93  E-value=0.00085  Score=60.74  Aligned_cols=91  Identities=19%  Similarity=0.238  Sum_probs=63.7

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCC----eEEEeeCCCCCC-ce---ecCcccccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGT----KMVGGVTPKKGG-TE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~----~vv~~VnP~~~g-~~---i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~  115 (340)
                      +|.|+|+ |+||..+.+.|.+.|+    ++. ..|++... +.   -.|+..+.+..++.+  +.|++++++|++.+.++
T Consensus         4 ~i~iIG~-G~mG~~~a~~l~~~g~~~~~~V~-~~~r~~~~~~~~~~~~g~~~~~~~~e~~~--~aDvVilav~~~~~~~v   79 (247)
T 3gt0_A            4 QIGFIGC-GNMGMAMIGGMINKNIVSSNQII-CSDLNTANLKNASEKYGLTTTTDNNEVAK--NADILILSIKPDLYASI   79 (247)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTSSCGGGEE-EECSCHHHHHHHHHHHCCEECSCHHHHHH--HCSEEEECSCTTTHHHH
T ss_pred             eEEEECc-cHHHHHHHHHHHhCCCCCCCeEE-EEeCCHHHHHHHHHHhCCEEeCChHHHHH--hCCEEEEEeCHHHHHHH
Confidence            4667798 9999999999999997    644 66765410 11   248888889988776  48999999999999998


Q ss_pred             HHHHHHc-CCc-EEEEecCCCChhh
Q 019500          116 ILEAMEA-ELD-LVVCITEGIPQHD  138 (340)
Q Consensus       116 v~ea~~~-Gvk-~vvi~t~Gf~e~~  138 (340)
                      +++.... .-. .++-.++|++.+.
T Consensus        80 ~~~l~~~l~~~~~vvs~~~gi~~~~  104 (247)
T 3gt0_A           80 INEIKEIIKNDAIIVTIAAGKSIES  104 (247)
T ss_dssp             C---CCSSCTTCEEEECSCCSCHHH
T ss_pred             HHHHHhhcCCCCEEEEecCCCCHHH
Confidence            8776532 112 3344678887543

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=96.91  E-value=0.0023  Score=61.33  Aligned_cols=86  Identities=16%  Similarity=0.173  Sum_probs=60.1

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCc---------ee-------------cCcccccCHHHhhccCC
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT---------EH-------------LGLPVFNTVAEAKAETK   99 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~---------~i-------------~G~p~y~sl~dip~~~~   99 (340)
                      ++|.|+|+ |.+|+.+++.|.+. ++++++..+......         ++             .++++..+.+++..  +
T Consensus         2 ikVgIiGa-G~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~--~   78 (337)
T 1cf2_P            2 KAVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD--E   78 (337)
T ss_dssp             EEEEEECC-STTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH--T
T ss_pred             eEEEEEeE-CHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhc--C
Confidence            57889999 99999999999874 678775544331000         01             11222234555554  5


Q ss_pred             CcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500          100 ANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       100 vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      +|+++.|+|.....+.++.++++|++ ++..++
T Consensus        79 vDvV~~atp~~~~~~~a~~~l~aG~~-VId~sp  110 (337)
T 1cf2_P           79 ADIVIDCTPEGIGAKNLKMYKEKGIK-AIFQGG  110 (337)
T ss_dssp             CSEEEECCSTTHHHHHHHHHHHHTCC-EEECTT
T ss_pred             CCEEEECCCchhhHHHHHHHHHcCCE-EEEecC
Confidence            99999999999999999999999987 343443

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=96.91  E-value=0.0044  Score=61.46  Aligned_cols=110  Identities=17%  Similarity=0.177  Sum_probs=71.9

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee-----------------------cCcccccCHHHhhccC
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-----------------------LGLPVFNTVAEAKAET   98 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i-----------------------~G~p~y~sl~dip~~~   98 (340)
                      ..+|.|+|+ |.+|...+..|.+ |++++ .+|.+.  +.+                       .++....++++...  
T Consensus        36 ~mkIaVIGl-G~mG~~lA~~La~-G~~V~-~~D~~~--~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~--  108 (432)
T 3pid_A           36 FMKITISGT-GYVGLSNGVLIAQ-NHEVV-ALDIVQ--AKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYR--  108 (432)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHT-TSEEE-EECSCH--HHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHT--
T ss_pred             CCEEEEECc-CHHHHHHHHHHHc-CCeEE-EEecCH--HHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHh--
Confidence            346778899 9999998888887 99865 555443  111                       13445567766665  


Q ss_pred             CCcEEEEecChh-----------hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCC
Q 019500           99 KANASAIYVPPP-----------FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCP  160 (340)
Q Consensus        99 ~vDlavi~vp~~-----------~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~  160 (340)
                      +.|++++++|..           .+.++++...+..-..+|+..+..+....+++.+.+ .+.++.. .|..+
T Consensus       109 ~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~l~~g~iVV~~STv~pgtt~~l~~~l-~~~~v~~-sPe~~  179 (432)
T 3pid_A          109 NADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTEINPNAVMIIKSTIPVGFTRDIKERL-GIDNVIF-SPEFL  179 (432)
T ss_dssp             TCSEEEECCCCEEETTTTEEECHHHHHHHHHHHHHCTTSEEEECSCCCTTHHHHHHHHH-TCCCEEE-CCCCC
T ss_pred             CCCEEEEeCCCccccccccccHHHHHHHHHHHHhcCCCcEEEEeCCCChHHHHHHHHHH-hhccEee-cCccC
Confidence            589999999986           466666665554334466677777766566666655 4455543 56654

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.90  E-value=0.0012  Score=61.08  Aligned_cols=88  Identities=14%  Similarity=0.202  Sum_probs=60.6

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee--cCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i--~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea  119 (340)
                      .+|.|+|++|++|..+++.|.+.|++++ .+|++... +..  .|+.+. +..+..+  +.|++++++|+..+.+++++.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~-~~~r~~~~~~~~~~~g~~~~-~~~~~~~--~aDvVi~av~~~~~~~v~~~l   87 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLA-AIEIAPEGRDRLQGMGIPLT-DGDGWID--EADVVVLALPDNIIEKVAEDI   87 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEE-EECCSHHHHHHHHHTTCCCC-CSSGGGG--TCSEEEECSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHhcCCCcC-CHHHHhc--CCCEEEEcCCchHHHHHHHHH
Confidence            4788889999999999999999999865 67765310 111  354443 5555554  589999999999998888776


Q ss_pred             HHc-CCc-EEEEecCCC
Q 019500          120 MEA-ELD-LVVCITEGI  134 (340)
Q Consensus       120 ~~~-Gvk-~vvi~t~Gf  134 (340)
                      ... .-. .++..++|.
T Consensus        88 ~~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           88 VPRVRPGTIVLILDAAA  104 (286)
T ss_dssp             GGGSCTTCEEEESCSHH
T ss_pred             HHhCCCCCEEEECCCCc
Confidence            543 222 333345555

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=96.85  E-value=0.0017  Score=62.60  Aligned_cols=92  Identities=15%  Similarity=0.083  Sum_probs=63.2

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce----------ec------CcccccCHHHhhccCCCcEEE
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE----------HL------GLPVFNTVAEAKAETKANASA  104 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~----------i~------G~p~y~sl~dip~~~~vDlav  104 (340)
                      ..+|.|+|+ |.+|..++..|.+.|+++. .++++..- +.          ..      ++.+..++++..+  +.|+++
T Consensus        29 ~mkI~VIGa-G~mG~alA~~La~~G~~V~-l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~--~aDvVi  104 (356)
T 3k96_A           29 KHPIAILGA-GSWGTALALVLARKGQKVR-LWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLE--GVTDIL  104 (356)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHTTTCCEE-EECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHT--TCCEEE
T ss_pred             CCeEEEECc-cHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHh--cCCEEE
Confidence            346777799 9999999999999998854 44443200 00          01      2344567877665  589999


Q ss_pred             EecChhhHHHHHHHHHHc-C-CcEEEEecCCCChh
Q 019500          105 IYVPPPFAAAAILEAMEA-E-LDLVVCITEGIPQH  137 (340)
Q Consensus       105 i~vp~~~v~~~v~ea~~~-G-vk~vvi~t~Gf~e~  137 (340)
                      +++|+..+.+++++.... . -..++.++.|+...
T Consensus       105 laVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~  139 (356)
T 3k96_A          105 IVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKG  139 (356)
T ss_dssp             ECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTT
T ss_pred             ECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcC
Confidence            999999998888877643 1 12456677888654

>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*

Probab=96.81  E-value=0.02  Score=55.93  Aligned_cols=123  Identities=15%  Similarity=0.247  Sum_probs=88.0

Q ss_pred             CCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCc--HHHHHHH
Q 019500          179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTA--EEDAAAL  256 (340)
Q Consensus       179 ~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~--~~~~~~f  256 (340)
                      ..|+|++++-+|+++...+|.....|.-...++-+|+.+ +.-.+.+.++.+..||+.++|++.+=+ |-.  ..-+...
T Consensus       255 l~G~Ig~~~nGaGl~m~t~D~i~~~Gg~~aNflD~gG~a-~~~~~~~~~~~il~d~~v~~ilvni~g-gi~~~~~vA~gi  332 (388)
T 2nu8_B          255 LDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGA-TKERVTEAFKIILSDDKVKAVLVNIFG-GIVRCDLIADGI  332 (388)
T ss_dssp             CSSSEEEEESSHHHHHHHHHHHHHTTCCBCEEEECCSCC-CHHHHHHHHHHHHTSTTCCEEEEEEES-CSSCHHHHHHHH
T ss_pred             CCCEEEEEeCCCchhhhhhHHHHHcCCCcCceeEecCCC-CHHHHHHHHHHHhcCCCCCEEEEEecC-CcCCchHHHHHH
Confidence            479999999999999999999999998788899998876 244567778888899999999997521 211  1122333


Q ss_pred             HHHhC---CCCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeec--CCHHHHHHHHHH
Q 019500          257 IKESG---TEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVV--ESPAKIGAAMLE  331 (340)
Q Consensus       257 ~~a~r---~~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v--~~~~el~~~~~~  331 (340)
                      +++++   .+||||+-..|.                             +.+.-...|++.|+-..  +|+++-...+.+
T Consensus       333 i~a~~~~~~~~pivvrl~G~-----------------------------n~~~g~~~l~~~g~~~~~~~~~~~aa~~~v~  383 (388)
T 2nu8_B          333 IGAVAEVGVNVPVVVRLEGN-----------------------------NAELGAKKLADSGLNIIAAKGLTDAAQQVVA  383 (388)
T ss_dssp             HHHHHHHTCCSCEEEEEEST-----------------------------THHHHHHHHHTTCSSEEECSSHHHHHHHHHH
T ss_pred             HHHHHhcCCCCeEEEEeCCC-----------------------------CHHHHHHHHHHCCCceecCCCHHHHHHHHHH
Confidence            44433   689999854442                             23344567888887666  788777666554


Q ss_pred             H
Q 019500          332 V  332 (340)
Q Consensus       332 ~  332 (340)
                      +
T Consensus       384 ~  384 (388)
T 2nu8_B          384 A  384 (388)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=96.80  E-value=0.0035  Score=60.25  Aligned_cols=98  Identities=14%  Similarity=0.177  Sum_probs=53.9

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh-hhHHHHH-HHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP-PFAAAAI-LEA  119 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~-~~v~~~v-~ea  119 (340)
                      ..+|.|+|. |++|+.+++.+..+|++++ ..||..  ....+...+.+++++.+  ..|++++++|. ..+..++ ++.
T Consensus       171 gktiGIIGl-G~IG~~vA~~l~~~G~~V~-~~dr~~--~~~~~~~~~~sl~ell~--~aDvVil~vP~t~~t~~li~~~~  244 (340)
T 4dgs_A          171 GKRIGVLGL-GQIGRALASRAEAFGMSVR-YWNRST--LSGVDWIAHQSPVDLAR--DSDVLAVCVAASAATQNIVDASL  244 (340)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECSSC--CTTSCCEECSSHHHHHH--TCSEEEECC----------CHHH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEcCCc--ccccCceecCCHHHHHh--cCCEEEEeCCCCHHHHHHhhHHH
Confidence            345667799 9999999999999999866 677765  23344556789999987  58999999994 3344444 222


Q ss_pred             HH-cCCc-EEEEecCCCChhhHHHHHHHH
Q 019500          120 ME-AELD-LVVCITEGIPQHDMVRVKAAL  146 (340)
Q Consensus       120 ~~-~Gvk-~vvi~t~Gf~e~~~~~l~~~a  146 (340)
                      .+ .+-. .+|..+.|- -.+.+.+.+++
T Consensus       245 l~~mk~gailIN~aRG~-vvde~aL~~aL  272 (340)
T 4dgs_A          245 LQALGPEGIVVNVARGN-VVDEDALIEAL  272 (340)
T ss_dssp             HHHTTTTCEEEECSCC-------------
T ss_pred             HhcCCCCCEEEECCCCc-ccCHHHHHHHH
Confidence            22 2222 334455553 23334455544

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=96.80  E-value=0.0052  Score=59.63  Aligned_cols=89  Identities=9%  Similarity=-0.027  Sum_probs=59.4

Q ss_pred             eEEEEeCCCCCcchHHHH-HHHHcCCe--EEEeeCCCCCCceec---C--ccccc--CHHHhhccCCCcEEEEecChhhH
Q 019500           43 TRVICQGITGKNGTFHTE-QAIEYGTK--MVGGVTPKKGGTEHL---G--LPVFN--TVAEAKAETKANASAIYVPPPFA  112 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~-~l~~~G~~--vv~~VnP~~~g~~i~---G--~p~y~--sl~dip~~~~vDlavi~vp~~~v  112 (340)
                      ++|.|+||+|..|+.+++ .+.+.++.  -++.+..+..|+.+.   |  +++..  +.+++ .  ++|+++.|+|....
T Consensus         2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~~~~~~~~~-~--~~DvVf~a~g~~~s   78 (367)
T 1t4b_A            2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEAL-K--ALDIIVTCQGGDYT   78 (367)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHH-H--TCSEEEECSCHHHH
T ss_pred             cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCCCccccCCCceEEEecCChHHh-c--CCCEEEECCCchhH
Confidence            578888999999999999 56555542  222443333344432   3  22322  24444 2  59999999999999


Q ss_pred             HHHHHHHHHcCCcEEEE-ecCCC
Q 019500          113 AAAILEAMEAELDLVVC-ITEGI  134 (340)
Q Consensus       113 ~~~v~ea~~~Gvk~vvi-~t~Gf  134 (340)
                      .+.+..+.+.|+|.+|| .++.|
T Consensus        79 ~~~a~~~~~~G~k~vVID~ss~~  101 (367)
T 1t4b_A           79 NEIYPKLRESGWQGYWIDAASSL  101 (367)
T ss_dssp             HHHHHHHHHTTCCCEEEECSSTT
T ss_pred             HHHHHHHHHCCCCEEEEcCChhh
Confidence            99999999999965443 34444

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=96.76  E-value=0.003  Score=61.10  Aligned_cols=92  Identities=9%  Similarity=-0.063  Sum_probs=66.4

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcC-CeEEEeeCCCCCCceecC----------------ccccc-CHHHhhccCCCc
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGGTEHLG----------------LPVFN-TVAEAKAETKAN  101 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G-~~vv~~VnP~~~g~~i~G----------------~p~y~-sl~dip~~~~vD  101 (340)
                      .+.++|.|+|+||-.|..+.+.|.++. +++.+...++..|+.+..                +++.. +.+++   .++|
T Consensus         5 ~~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~---~~vD   81 (359)
T 4dpl_A            5 RRTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLM---DDVD   81 (359)
T ss_dssp             -CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGC---TTCC
T ss_pred             CCCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHHh---cCCC
Confidence            456899999999999999999887764 466656666665554421                11111 12222   2599


Q ss_pred             EEEEecChhhHHHHHHHHHHcCCcEEEEecCCCC
Q 019500          102 ASAIYVPPPFAAAAILEAMEAELDLVVCITEGIP  135 (340)
Q Consensus       102 lavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~  135 (340)
                      +++.|+|.....+.+.++.++|++. |.+|+-|.
T Consensus        82 vvf~a~p~~~s~~~a~~~~~~G~~v-IDlSa~~R  114 (359)
T 4dpl_A           82 IIFSPLPQGAAGPVEEQFAKEGFPV-ISNSPDHR  114 (359)
T ss_dssp             EEEECCCTTTHHHHHHHHHHTTCEE-EECSSTTT
T ss_pred             EEEECCChHHHHHHHHHHHHCCCEE-EEcCCCcc
Confidence            9999999999999999999999986 56787663

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=96.76  E-value=0.003  Score=61.10  Aligned_cols=92  Identities=9%  Similarity=-0.063  Sum_probs=66.4

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcC-CeEEEeeCCCCCCceecC----------------ccccc-CHHHhhccCCCc
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGGTEHLG----------------LPVFN-TVAEAKAETKAN  101 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G-~~vv~~VnP~~~g~~i~G----------------~p~y~-sl~dip~~~~vD  101 (340)
                      .+.++|.|+|+||-.|..+.+.|.++. +++.+...++..|+.+..                +++.. +.+++   .++|
T Consensus         5 ~~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~---~~vD   81 (359)
T 4dpk_A            5 RRTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLM---DDVD   81 (359)
T ss_dssp             -CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGC---TTCC
T ss_pred             CCCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHHh---cCCC
Confidence            456899999999999999999887764 466656666665554421                11111 12222   2599


Q ss_pred             EEEEecChhhHHHHHHHHHHcCCcEEEEecCCCC
Q 019500          102 ASAIYVPPPFAAAAILEAMEAELDLVVCITEGIP  135 (340)
Q Consensus       102 lavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~  135 (340)
                      +++.|+|.....+.+.++.++|++. |.+|+-|.
T Consensus        82 vvf~a~p~~~s~~~a~~~~~~G~~v-IDlSa~~R  114 (359)
T 4dpk_A           82 IIFSPLPQGAAGPVEEQFAKEGFPV-ISNSPDHR  114 (359)
T ss_dssp             EEEECCCTTTHHHHHHHHHHTTCEE-EECSSTTT
T ss_pred             EEEECCChHHHHHHHHHHHHCCCEE-EEcCCCcc
Confidence            9999999999999999999999986 56787663

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=96.74  E-value=0.0017  Score=60.75  Aligned_cols=87  Identities=14%  Similarity=0.127  Sum_probs=58.4

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCC--CCCC-cee--c------C-----ccccc--CHHHhhccCCCcEEEE
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTP--KKGG-TEH--L------G-----LPVFN--TVAEAKAETKANASAI  105 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP--~~~g-~~i--~------G-----~p~y~--sl~dip~~~~vDlavi  105 (340)
                      +|.|+|+ |.+|..++..|.+.|+++. .+++  +... +.+  .      |     +.+..  ++++..+  +.|++++
T Consensus         2 ~I~iiG~-G~mG~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~D~vi~   77 (335)
T 1txg_A            2 IVSILGA-GAMGSALSVPLVDNGNEVR-IWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLE--NAEVVLL   77 (335)
T ss_dssp             EEEEESC-CHHHHHHHHHHHHHCCEEE-EECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHT--TCSEEEE
T ss_pred             EEEEECc-CHHHHHHHHHHHhCCCeEE-EEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHh--cCCEEEE
Confidence            5777899 9999999999999999855 5665  3200 011  1      2     13444  6766554  5899999


Q ss_pred             ecChhhHHHHHHHHHHcCC-cEEEEecCCC
Q 019500          106 YVPPPFAAAAILEAMEAEL-DLVVCITEGI  134 (340)
Q Consensus       106 ~vp~~~v~~~v~ea~~~Gv-k~vvi~t~Gf  134 (340)
                      ++|+..+.+++++....+- +.++.++.|+
T Consensus        78 ~v~~~~~~~v~~~i~~l~~~~~vv~~~ng~  107 (335)
T 1txg_A           78 GVSTDGVLPVMSRILPYLKDQYIVLISKGL  107 (335)
T ss_dssp             CSCGGGHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred             cCChHHHHHHHHHHhcCCCCCEEEEEcCcC
Confidence            9999999888877654111 2344455587

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=96.74  E-value=0.0017  Score=62.41  Aligned_cols=86  Identities=16%  Similarity=0.125  Sum_probs=62.5

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCC-CCC--------cee-------------------cC--ccccc--
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPK-KGG--------TEH-------------------LG--LPVFN--   89 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~-~~g--------~~i-------------------~G--~p~y~--   89 (340)
                      ++|.|+|+ |++|+.+++.+.+. ++++++..+|. ...        +++                   .|  ++++.  
T Consensus         4 ikVgI~G~-GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~~~   82 (337)
T 3e5r_O            4 IKIGINGF-GRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIR   82 (337)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEECCS
T ss_pred             eEEEEECc-CHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEecC
Confidence            68899999 99999999998876 67888665551 000        011                   11  23353  


Q ss_pred             CHHHhh-ccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 019500           90 TVAEAK-AETKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (340)
Q Consensus        90 sl~dip-~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi  129 (340)
                      +.++++ .+.++|+++.|+|.....+.+..++++|+|.+||
T Consensus        83 dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l~aGak~VVI  123 (337)
T 3e5r_O           83 NPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVI  123 (337)
T ss_dssp             CGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEE
T ss_pred             ChHHccccccCCCEEEECCCchhhHHHHHHHHHcCCCEEEE
Confidence            677764 1125999999999999999999999999987554

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=96.71  E-value=0.0048  Score=60.15  Aligned_cols=116  Identities=14%  Similarity=0.132  Sum_probs=73.7

Q ss_pred             cCCeEEEEeCCCCCcchHHHH-HHHHcCC---eEEEeeCCCCCCcee---cCcc-ccc---CHHHhhccCCCcEEEEecC
Q 019500           40 DKNTRVICQGITGKNGTFHTE-QAIEYGT---KMVGGVTPKKGGTEH---LGLP-VFN---TVAEAKAETKANASAIYVP  108 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~-~l~~~G~---~vv~~VnP~~~g~~i---~G~p-~y~---sl~dip~~~~vDlavi~vp  108 (340)
                      |.+++|.|+||||-.|..+++ .|.++.|   +++ .+..+..|+.+   .|.. .+.   +.+++.   ++|+++.|+|
T Consensus         2 ~~~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~-~~ss~~aG~~~~~~~~~~~~v~~~~~~~~~~---~vDvvf~a~~   77 (377)
T 3uw3_A            2 PGSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPV-FFSTSNAGGKAPSFAKNETTLKDATSIDDLK---KCDVIITCQG   77 (377)
T ss_dssp             -CCCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEE-EEESSCTTSBCCTTCCSCCBCEETTCHHHHH---TCSEEEECSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhhCCCCceEEE-EEechhcCCCHHHcCCCceEEEeCCChhHhc---CCCEEEECCC
Confidence            346788899999999999998 7777654   455 33333444443   2211 122   233432   5999999999


Q ss_pred             hhhHHHHHHHHHHcCCc-EEEEecCCCChh-h---------HHHHHHHHhccCCc-EEEccCCCC
Q 019500          109 PPFAAAAILEAMEAELD-LVVCITEGIPQH-D---------MVRVKAALNNQSKT-RLVGPNCPG  161 (340)
Q Consensus       109 ~~~v~~~v~ea~~~Gvk-~vvi~t~Gf~e~-~---------~~~l~~~aar~~gi-rviGPNc~G  161 (340)
                      .....+.+..+.++|+| .+|-.++.|.-+ +         .+.+.. + ++.++ .|..|||.-
T Consensus        78 ~~~s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~~-~-~~~~i~~Ianp~C~t  140 (377)
T 3uw3_A           78 GDYTNDVFPKLRAAGWNGYWIDAASSLRMKDDAVIILDPVNLNVIKD-A-LVNGTKNFIGGNCTV  140 (377)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEECSSTTTTCTTEEEECHHHHHHHHHH-H-HHTTCCEEEECCHHH
T ss_pred             hHHHHHHHHHHHHCCCCEEEEeCCcccccCCCCceECCcCCHHHHhh-h-hhcCCcEEEcCCHHH
Confidence            99999999999999985 555555555321 1         122321 1 23565 477999853

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=96.70  E-value=0.0017  Score=61.96  Aligned_cols=87  Identities=22%  Similarity=0.254  Sum_probs=60.7

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC--c--eecCcccccCHHHhhccCCCcEEEEecChhhHHHHHH-H
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG--T--EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAIL-E  118 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g--~--~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~-e  118 (340)
                      +|.|+|+ |.+|+.+++.|.+.|++++ ..+++...  +  .-.|+.++ +++++..  +.|++++++|+....++++ +
T Consensus        18 ~I~IIG~-G~mG~alA~~L~~~G~~V~-~~~~~~~~~~~~a~~~G~~~~-~~~e~~~--~aDvVilavp~~~~~~v~~~~   92 (338)
T 1np3_A           18 KVAIIGY-GSQGHAHACNLKDSGVDVT-VGLRSGSATVAKAEAHGLKVA-DVKTAVA--AADVVMILTPDEFQGRLYKEE   92 (338)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCEE-EECCTTCHHHHHHHHTTCEEE-CHHHHHH--TCSEEEECSCHHHHHHHHHHH
T ss_pred             EEEEECc-hHHHHHHHHHHHHCcCEEE-EEECChHHHHHHHHHCCCEEc-cHHHHHh--cCCEEEEeCCcHHHHHHHHHH
Confidence            4566698 9999999999999999865 56655410  0  12466666 8877765  5899999999999988887 5


Q ss_pred             HHHc-CCcEEEEecCCCC
Q 019500          119 AMEA-ELDLVVCITEGIP  135 (340)
Q Consensus       119 a~~~-Gvk~vvi~t~Gf~  135 (340)
                      .... .-..+++..+|+.
T Consensus        93 i~~~l~~~~ivi~~~gv~  110 (338)
T 1np3_A           93 IEPNLKKGATLAFAHGFS  110 (338)
T ss_dssp             TGGGCCTTCEEEESCCHH
T ss_pred             HHhhCCCCCEEEEcCCch
Confidence            4332 2234555666653

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=96.69  E-value=0.0033  Score=60.80  Aligned_cols=90  Identities=16%  Similarity=0.112  Sum_probs=63.1

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcC-CeEEEeeCCCCCCceec-------Cc---c-cccCHHHhhccCCCcEEEEecC
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGGTEHL-------GL---P-VFNTVAEAKAETKANASAIYVP  108 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G-~~vv~~VnP~~~g~~i~-------G~---p-~y~sl~dip~~~~vDlavi~vp  108 (340)
                      ++++|.|+|++|..|+.+++.|.+.. +++++..++...|..+.       |.   . .+.+ ++...  ++|+++.|+|
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~--~vDvVf~atp   91 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFS--TVDAVFCCLP   91 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGG--GCSEEEECCC
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhc--CCCEEEEcCC
Confidence            34789999999999999999998864 57776656543333221       11   0 0111 22222  5899999999


Q ss_pred             hhhHHHHHHHHHHcCCcEEEEecCCCC
Q 019500          109 PPFAAAAILEAMEAELDLVVCITEGIP  135 (340)
Q Consensus       109 ~~~v~~~v~ea~~~Gvk~vvi~t~Gf~  135 (340)
                      .....+.+..+ ++|++ +|-.++-|.
T Consensus        92 ~~~s~~~a~~~-~aG~~-VId~sa~~R  116 (359)
T 1xyg_A           92 HGTTQEIIKEL-PTALK-IVDLSADFR  116 (359)
T ss_dssp             TTTHHHHHHTS-CTTCE-EEECSSTTT
T ss_pred             chhHHHHHHHH-hCCCE-EEECCcccc
Confidence            99999999999 99987 466777664

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=96.67  E-value=0.0024  Score=55.87  Aligned_cols=88  Identities=15%  Similarity=0.111  Sum_probs=60.5

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee---cC-------cccccCHHHhhccCCCcEEEEecChhhH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---LG-------LPVFNTVAEAKAETKANASAIYVPPPFA  112 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i---~G-------~p~y~sl~dip~~~~vDlavi~vp~~~v  112 (340)
                      +|.|+|++|.+|+.+++.|.+.|+++. .++++... +.+   .|       +. +.++++..+  +.|++++++|+..+
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~D~Vi~~~~~~~~   77 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIV-VGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAE--ACDIAVLTIPWEHA   77 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEE-EEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHH--HCSEEEECSCHHHH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHh--cCCEEEEeCChhhH
Confidence            577889779999999999999999855 55554310 111   12       33 456777665  48999999999998


Q ss_pred             HHHHHHHHHc-CCcEEEEecCCCC
Q 019500          113 AAAILEAMEA-ELDLVVCITEGIP  135 (340)
Q Consensus       113 ~~~v~ea~~~-Gvk~vvi~t~Gf~  135 (340)
                      .+++++..+. .-+.++.+++|++
T Consensus        78 ~~~~~~l~~~~~~~~vi~~~~g~~  101 (212)
T 1jay_A           78 IDTARDLKNILREKIVVSPLVPVS  101 (212)
T ss_dssp             HHHHHHTHHHHTTSEEEECCCCEE
T ss_pred             HHHHHHHHHHcCCCEEEEcCCCcC
Confidence            8888765431 2245666777876

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=96.65  E-value=0.0023  Score=58.02  Aligned_cols=89  Identities=16%  Similarity=0.120  Sum_probs=59.8

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC---------------ce---ecCcccccCHHHhhccCCCcE
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG---------------TE---HLGLPVFNTVAEAKAETKANA  102 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g---------------~~---i~G~p~y~sl~dip~~~~vDl  102 (340)
                      ...+|.|+|+ |+||+.++++|.+.|++++ ..|++...               .+   -.|...+.++.++.+  ..|+
T Consensus        18 ~~~kIgiIG~-G~mG~alA~~L~~~G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~aDv   93 (245)
T 3dtt_A           18 QGMKIAVLGT-GTVGRTMAGALADLGHEVT-IGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAA--GAEL   93 (245)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHH--HCSE
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHh--cCCE
Confidence            3456777798 9999999999999999854 45544310               00   123445667888766  4899


Q ss_pred             EEEecChhhHHHHHHHH-HHc-CCcEEEEecCC
Q 019500          103 SAIYVPPPFAAAAILEA-MEA-ELDLVVCITEG  133 (340)
Q Consensus       103 avi~vp~~~v~~~v~ea-~~~-Gvk~vvi~t~G  133 (340)
                      +++++|+....+++++. ... .=+.++.++.|
T Consensus        94 Vilavp~~~~~~~~~~i~~~~l~g~ivi~~s~~  126 (245)
T 3dtt_A           94 VVNATEGASSIAALTAAGAENLAGKILVDIANP  126 (245)
T ss_dssp             EEECSCGGGHHHHHHHHCHHHHTTSEEEECCCC
T ss_pred             EEEccCcHHHHHHHHHhhhhhcCCCEEEECCCC
Confidence            99999999998888765 221 22345555544

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=96.64  E-value=0.0078  Score=58.72  Aligned_cols=91  Identities=12%  Similarity=0.024  Sum_probs=65.0

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcC-CeEEEee-CCCCCCceecCc-c--------------cccCHH---HhhccCCC
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYG-TKMVGGV-TPKKGGTEHLGL-P--------------VFNTVA---EAKAETKA  100 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G-~~vv~~V-nP~~~g~~i~G~-p--------------~y~sl~---dip~~~~v  100 (340)
                      ++++|.|+|+||-.|..+++.|.++. +++.+.. ..+..|+.+..+ |              .+.+++   ++ .  ++
T Consensus        18 ~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~-~--~~   94 (381)
T 3hsk_A           18 SVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEGNF-L--EC   94 (381)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCTTG-G--GC
T ss_pred             CccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhhhc-c--cC
Confidence            45789999999999999999888875 4565444 565555554210 0              122121   22 2  48


Q ss_pred             cEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCC
Q 019500          101 NASAIYVPPPFAAAAILEAMEAELDLVVCITEGIP  135 (340)
Q Consensus       101 Dlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~  135 (340)
                      |+++.|+|.....+.+.++.++|++. |-.++-|.
T Consensus        95 Dvvf~alp~~~s~~~~~~~~~~G~~V-IDlSa~fR  128 (381)
T 3hsk_A           95 DVVFSGLDADVAGDIEKSFVEAGLAV-VSNAKNYR  128 (381)
T ss_dssp             SEEEECCCHHHHHHHHHHHHHTTCEE-EECCSTTT
T ss_pred             CEEEECCChhHHHHHHHHHHhCCCEE-EEcCCccc
Confidence            99999999999999999999999985 66787763

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=96.62  E-value=0.0026  Score=60.75  Aligned_cols=90  Identities=14%  Similarity=0.135  Sum_probs=61.5

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee----------------cCcccccCHHHhhccCCCcEEEEe
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH----------------LGLPVFNTVAEAKAETKANASAIY  106 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i----------------~G~p~y~sl~dip~~~~vDlavi~  106 (340)
                      +|.|+|+ |.||...+..|.+.|+++. .+|++... +.+                .++.+..++++..+  +.|+++++
T Consensus        17 kI~iIG~-G~mG~~la~~L~~~G~~V~-~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~aDvVila   92 (366)
T 1evy_A           17 KAVVFGS-GAFGTALAMVLSKKCREVC-VWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN--GAEIILFV   92 (366)
T ss_dssp             EEEEECC-SHHHHHHHHHHTTTEEEEE-EECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT--TCSSEEEC
T ss_pred             eEEEECC-CHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHc--CCCEEEEC
Confidence            6888899 9999999999998888754 56654200 011                12445567877655  58999999


Q ss_pred             cChhhHHHHHHH----HH---Hc-CCcEEEEecCCCChhh
Q 019500          107 VPPPFAAAAILE----AM---EA-ELDLVVCITEGIPQHD  138 (340)
Q Consensus       107 vp~~~v~~~v~e----a~---~~-Gvk~vvi~t~Gf~e~~  138 (340)
                      +|+..+.+++++    ..   .. +. .++.++.|+..+.
T Consensus        93 v~~~~~~~v~~~~~~gl~~~l~~~~~-ivv~~~~gi~~~~  131 (366)
T 1evy_A           93 IPTQFLRGFFEKSGGNLIAYAKEKQV-PVLVCTKGIERST  131 (366)
T ss_dssp             CCHHHHHHHHHHHCHHHHHHHHHHTC-CEEECCCSCCTTT
T ss_pred             CChHHHHHHHHHhHHHHHHhcCccCC-EEEEECCcCCCcc
Confidence            999888888776    43   33 43 3455666886543

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=96.59  E-value=0.0053  Score=59.02  Aligned_cols=90  Identities=11%  Similarity=0.054  Sum_probs=61.4

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcC-CeEEEee-CCCCCCcee---cC-------------cccc-cCHHHhhccCCCcEE
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYG-TKMVGGV-TPKKGGTEH---LG-------------LPVF-NTVAEAKAETKANAS  103 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G-~~vv~~V-nP~~~g~~i---~G-------------~p~y-~sl~dip~~~~vDla  103 (340)
                      ++|.|+|++|..|+.+++.|.+.+ +++++.. ++...|+.+   .+             +.+. .+.+++.+ .++|++
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~DvV   87 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEF-EDVDIV   87 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGG-TTCCEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhc-CCCCEE
Confidence            688999999999999999888764 5676554 354333332   11             1111 13333322 159999


Q ss_pred             EEecChhhHHHHHHHHHHcCCcEEEEecCCC
Q 019500          104 AIYVPPPFAAAAILEAMEAELDLVVCITEGI  134 (340)
Q Consensus       104 vi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf  134 (340)
                      ++++|.....+.+..+.+.|++ +|-.++-|
T Consensus        88 ~~atp~~~~~~~a~~~~~aG~~-VId~s~~~  117 (354)
T 1ys4_A           88 FSALPSDLAKKFEPEFAKEGKL-IFSNASAY  117 (354)
T ss_dssp             EECCCHHHHHHHHHHHHHTTCE-EEECCSTT
T ss_pred             EECCCchHHHHHHHHHHHCCCE-EEECCchh
Confidence            9999999999999999999998 34444444

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=96.57  E-value=0.0019  Score=61.89  Aligned_cols=90  Identities=16%  Similarity=0.141  Sum_probs=64.7

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCC-CCCC--------ce-----------------ecC--cccc--cC
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTP-KKGG--------TE-----------------HLG--LPVF--NT   90 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP-~~~g--------~~-----------------i~G--~p~y--~s   90 (340)
                      +++|.|+|+ |++|+.+++.+.+. ++++++..+| ...+        ++                 +.|  ++++  .+
T Consensus         3 ~ikVgI~G~-G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d   81 (335)
T 1u8f_O            3 KVKVGVNGF-GRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERD   81 (335)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS
T ss_pred             ceEEEEEcc-CHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCC
Confidence            368899998 99999999998775 6888866555 1100        01                 112  2334  36


Q ss_pred             HHHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCC
Q 019500           91 VAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEG  133 (340)
Q Consensus        91 l~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~G  133 (340)
                      .++++- +.++|+++.++|.....+.+..++++|++.++ ++..
T Consensus        82 ~~~l~~~~~~vDvV~eatg~~~~~e~a~~~l~aGak~V~-iSap  124 (335)
T 1u8f_O           82 PSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI-ISAP  124 (335)
T ss_dssp             GGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEE-ESSC
T ss_pred             HHHCccccCCCCEEEECCCchhhHHHHHHHHhCCCeEEE-eccC
Confidence            777751 12699999999999999999999999999855 5654

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=96.57  E-value=0.011  Score=57.44  Aligned_cols=112  Identities=14%  Similarity=0.087  Sum_probs=71.0

Q ss_pred             eEEEEeCCCCCcchHHHH-HHHHcCC---eEEEeeCCCCCCcee---cCcc-ccc---CHHHhhccCCCcEEEEecChhh
Q 019500           43 TRVICQGITGKNGTFHTE-QAIEYGT---KMVGGVTPKKGGTEH---LGLP-VFN---TVAEAKAETKANASAIYVPPPF  111 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~-~l~~~G~---~vv~~VnP~~~g~~i---~G~p-~y~---sl~dip~~~~vDlavi~vp~~~  111 (340)
                      ++|.|+||||-.|...++ .|.++.|   ++++.-..+ .|+.+   .|.. .+.   +.+++ +  ++|+++.|+|...
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~~~~~~~~~~~~~~-~--~~Dvvf~a~~~~~   76 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGKDAGMLHDAFDIESL-K--QLDAVITCQGGSY   76 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSSCCCBCEETTCHHHH-T--TCSEEEECSCHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCCCceEEEecCChhHh-c--cCCEEEECCChHH
Confidence            467888999999999998 7777654   455333333 45443   2211 222   23333 2  5999999999999


Q ss_pred             HHHHHHHHHHcCCc-EEEEecCCCChh-h---------HHHHHHHHhccCCc-EEEccCCC
Q 019500          112 AAAAILEAMEAELD-LVVCITEGIPQH-D---------MVRVKAALNNQSKT-RLVGPNCP  160 (340)
Q Consensus       112 v~~~v~ea~~~Gvk-~vvi~t~Gf~e~-~---------~~~l~~~aar~~gi-rviGPNc~  160 (340)
                      ..+.+..+.++|++ .+|-.++.|.-+ +         .+.+.. + ++.++ .|..|||.
T Consensus        77 s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~~-~-~~~~i~~Ianp~C~  135 (370)
T 3pzr_A           77 TEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILH-G-IHHGTKTFVGGNCT  135 (370)
T ss_dssp             HHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHH-H-HHTTCCEEEECCHH
T ss_pred             HHHHHHHHHHCCCCEEEEeCCchhccCCCCcEEcccCCHHHHhh-h-hhcCCcEEEcCChH
Confidence            99999999999985 445555555321 1         122221 1 23565 47799994

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=96.57  E-value=0.0058  Score=58.99  Aligned_cols=89  Identities=13%  Similarity=0.042  Sum_probs=62.4

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcC------CeEEEeeCCCCCCceec-------C---ccccc-CHHHhhccCCCcEEE
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYG------TKMVGGVTPKKGGTEHL-------G---LPVFN-TVAEAKAETKANASA  104 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G------~~vv~~VnP~~~g~~i~-------G---~p~y~-sl~dip~~~~vDlav  104 (340)
                      +++|.|+||+|..|+.+++.|.+.+      +++++....+..|+.+.       +   +.+-+ +.+++.   ++|+++
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~~~~~---~~DvVf   85 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAAVLG---GHDAVF   85 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCHHHHT---TCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCHHHhc---CCCEEE
Confidence            4788999999999999999998876      46665554443333221       1   11111 222322   589999


Q ss_pred             EecChhhHHHHHHHHHHcCCcEEEEecCCCC
Q 019500          105 IYVPPPFAAAAILEAMEAELDLVVCITEGIP  135 (340)
Q Consensus       105 i~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~  135 (340)
                      .++|.....+.+..+ +.|++. |.+|+-|.
T Consensus        86 ~alg~~~s~~~~~~~-~~G~~v-IDlSa~~R  114 (352)
T 2nqt_A           86 LALPHGHSAVLAQQL-SPETLI-IDCGADFR  114 (352)
T ss_dssp             ECCTTSCCHHHHHHS-CTTSEE-EECSSTTT
T ss_pred             ECCCCcchHHHHHHH-hCCCEE-EEECCCcc
Confidence            999999999999999 999864 66787775

>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10

Probab=96.55  E-value=0.0078  Score=58.10  Aligned_cols=115  Identities=19%  Similarity=0.189  Sum_probs=77.1

Q ss_pred             cccCcCCeEEEEeCCCCCcchHHHH---HHHHc--CCeEEEeeCCCCCCcee--------cCcccccCHHHhhccCCCcE
Q 019500           36 AVFVDKNTRVICQGITGKNGTFHTE---QAIEY--GTKMVGGVTPKKGGTEH--------LGLPVFNTVAEAKAETKANA  102 (340)
Q Consensus        36 ~lf~p~~iaViVvGasgk~G~~v~~---~l~~~--G~~vv~~VnP~~~g~~i--------~G~p~y~sl~dip~~~~vDl  102 (340)
                      +.+.. ..+++|.|- |.+|+...|   .+.++  ++++++.+ |...|++.        .|+|++.|++++.+. .+|+
T Consensus        17 ~~~~~-~~~~vi~~~-g~~g~~~aKta~gllr~~~~~~iVgvi-~~~~Gkd~ge~~~g~~~gipv~~d~~~al~~-~~d~   92 (350)
T 2g0t_A           17 KLYQP-GTPAAIVAW-GQLGTAHAKTTYGLLRHSRLFKPVCVV-AEHEGKMASDFVKPVRYDVPVVSSVEKAKEM-GAEV   92 (350)
T ss_dssp             HHSCT-TEEEEEECT-TTTTSGGGHHHHHHHHHCSSEEEEEEE-SSCTTCBGGGTCC-CCSCCBEESSHHHHHHT-TCCE
T ss_pred             hhhCc-CCCEEEEeC-CCCChHHHHHHHHHHhhCCCCeEEEEe-ecCCCCcHHHhhCCCCCCceeeCCHHHHHhc-CCCE
Confidence            34433 446777776 777766555   44665  58899888 87766543        369999999999864 6999


Q ss_pred             EEEecC------hhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEcc
Q 019500          103 SAIYVP------PPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGP  157 (340)
Q Consensus       103 avi~vp------~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGP  157 (340)
                      +++.+.      ++.+.+.+++|+++|...+-  +-.....+..++.+++ +++|..+++=
T Consensus        93 lvig~a~~gg~l~~~~~~~I~~Al~~G~nVvs--glh~~l~~~pel~~~A-~~~Gv~i~dv  150 (350)
T 2g0t_A           93 LIIGVSNPGGYLEEQIATLVKKALSLGMDVIS--GLHFKISQQTEFLKIA-HENGTRIIDI  150 (350)
T ss_dssp             EEECCCSCCHHHHHHHHHHHHHHHHTTCEEEE--CCCC--CCHHHHHHHH-HHHTCCEEES
T ss_pred             EEEEecCCCCCCCHHHHHHHHHHHHcCCcEEe--CChhhhhCCHHHHHHH-HHCCCEEEEe
Confidence            999862      13556899999999998632  2222233444566655 7788887764

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.50  E-value=0.0055  Score=56.42  Aligned_cols=91  Identities=12%  Similarity=0.090  Sum_probs=58.1

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee--cCcccc------------cCHHHhhcc-CCCcEEEEe
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVF------------NTVAEAKAE-TKANASAIY  106 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i--~G~p~y------------~sl~dip~~-~~vDlavi~  106 (340)
                      .+|.|+|+ |.+|..++..|.+.|+++. .++++... +.+  .|+...            .+..++.+. .+.|+++++
T Consensus         4 m~i~iiG~-G~~G~~~a~~l~~~g~~V~-~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~   81 (316)
T 2ew2_A            4 MKIAIAGA-GAMGSRLGIMLHQGGNDVT-LIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIAL   81 (316)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEEC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCCcEE-EEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEE
Confidence            46788899 9999999999999999855 56654200 111  132211            122333220 158999999


Q ss_pred             cChhhHHHHHHHHHHc-C-CcEEEEecCCCC
Q 019500          107 VPPPFAAAAILEAMEA-E-LDLVVCITEGIP  135 (340)
Q Consensus       107 vp~~~v~~~v~ea~~~-G-vk~vvi~t~Gf~  135 (340)
                      +|+..+.+++++.... + -+.++.++.|+.
T Consensus        82 v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~  112 (316)
T 2ew2_A           82 TKAQQLDAMFKAIQPMITEKTYVLCLLNGLG  112 (316)
T ss_dssp             SCHHHHHHHHHHHGGGCCTTCEEEECCSSSC
T ss_pred             eccccHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence            9999988888776543 1 134556677876

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=96.49  E-value=0.016  Score=51.22  Aligned_cols=75  Identities=19%  Similarity=0.127  Sum_probs=55.1

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAME  121 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~  121 (340)
                      ..+|.|+|+ |++|..+++.|.+.|+++. .++++.  +            . .+  +.|++++++|+..+.+++++...
T Consensus        19 ~~~I~iiG~-G~mG~~la~~l~~~g~~V~-~~~~~~--~------------~-~~--~aD~vi~av~~~~~~~v~~~l~~   79 (209)
T 2raf_A           19 GMEITIFGK-GNMGQAIGHNFEIAGHEVT-YYGSKD--Q------------A-TT--LGEIVIMAVPYPALAALAKQYAT   79 (209)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECTTC--C------------C-SS--CCSEEEECSCHHHHHHHHHHTHH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEcCCH--H------------H-hc--cCCEEEEcCCcHHHHHHHHHHHH
Confidence            446777897 9999999999999999865 677665  2            2 22  48999999999988888877643


Q ss_pred             c-CCcEEEEecCCCC
Q 019500          122 A-ELDLVVCITEGIP  135 (340)
Q Consensus       122 ~-Gvk~vvi~t~Gf~  135 (340)
                      . .-+.++..+.|++
T Consensus        80 ~~~~~~vi~~~~g~~   94 (209)
T 2raf_A           80 QLKGKIVVDITNPLN   94 (209)
T ss_dssp             HHTTSEEEECCCCBC
T ss_pred             hcCCCEEEEECCCCC
Confidence            2 2234555677876

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=96.45  E-value=0.0081  Score=58.29  Aligned_cols=90  Identities=14%  Similarity=0.027  Sum_probs=63.9

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCC---eEEEeeCCCCCCceec--Ccc-cccCH--HHhhccCCCcEEEEecChhhHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGGTEHL--GLP-VFNTV--AEAKAETKANASAIYVPPPFAA  113 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~---~vv~~VnP~~~g~~i~--G~p-~y~sl--~dip~~~~vDlavi~vp~~~v~  113 (340)
                      +++|.|+|+||..|..+++.|.+.++   ++.....++..|+.+.  |.. .+..+  +++ +  ++|+++.|+|.....
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~~~~~~~~~~~~~-~--~~Dvvf~a~~~~~s~   78 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAF-E--GVDIALFSAGSSTSA   78 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTEEEEEEECCTTTT-T--TCSEEEECSCHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecCCCceEeeCCHHHh-c--CCCEEEECCChHhHH
Confidence            46888999999999999998888755   3444455666555432  211 11111  122 2  599999999999999


Q ss_pred             HHHHHHHHcCCcEEEEecCCCC
Q 019500          114 AAILEAMEAELDLVVCITEGIP  135 (340)
Q Consensus       114 ~~v~ea~~~Gvk~vvi~t~Gf~  135 (340)
                      +.+..+.++|++. |..++-|.
T Consensus        79 ~~a~~~~~~G~~v-IDlSa~~R   99 (366)
T 3pwk_A           79 KYAPYAVKAGVVV-VDNTSYFR   99 (366)
T ss_dssp             HHHHHHHHTTCEE-EECSSTTT
T ss_pred             HHHHHHHHCCCEE-EEcCCccc
Confidence            9999999999975 66777663

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=96.44  E-value=0.0044  Score=58.21  Aligned_cols=61  Identities=15%  Similarity=0.147  Sum_probs=48.1

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      .+|.|+|. |++|+.+++.+..+|++++ ..||..  +.........+++++.+  ..|++++++|.
T Consensus       123 ~tvGIIGl-G~IG~~vA~~l~~~G~~V~-~~dr~~--~~~~~~~~~~~l~ell~--~aDiV~l~~P~  183 (290)
T 3gvx_A          123 KALGILGY-GGIGRRVAHLAKAFGMRVI-AYTRSS--VDQNVDVISESPADLFR--QSDFVLIAIPL  183 (290)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCEEE-EECSSC--CCTTCSEECSSHHHHHH--HCSEEEECCCC
T ss_pred             chheeecc-CchhHHHHHHHHhhCcEEE-EEeccc--cccccccccCChHHHhh--ccCeEEEEeec
Confidence            35667799 9999999999999999966 677765  33333555679999887  48999999994

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.43  E-value=0.0091  Score=52.18  Aligned_cols=88  Identities=17%  Similarity=0.140  Sum_probs=59.3

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC-Ccee-cCcccc-------cCHHHhhccCCCcEEEEecChh--
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-GTEH-LGLPVF-------NTVAEAKAETKANASAIYVPPP--  110 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~-g~~i-~G~p~y-------~sl~dip~~~~vDlavi~vp~~--  110 (340)
                      +.+|+|.|++|..|+.+++.|.+.|++++. +..+.. .... .++..+       .++.++.+  ++|++|-+..+.  
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~-~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~a~~~~~   80 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTA-VVRHPEKIKIENEHLKVKKADVSSLDEVCEVCK--GADAVISAFNPGWN   80 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEE-ECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHT--TCSEEEECCCC---
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEE-EEcCcccchhccCceEEEEecCCCHHHHHHHhc--CCCEEEEeCcCCCC
Confidence            346889999999999999999999998774 433221 0111 233322       23555554  599999887543  


Q ss_pred             ----------hHHHHHHHHHHcCCcEEEEecC
Q 019500          111 ----------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       111 ----------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                                ....+++.|.+.|++.+|.+++
T Consensus        81 ~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss  112 (227)
T 3dhn_A           81 NPDIYDETIKVYLTIIDGVKKAGVNRFLMVGG  112 (227)
T ss_dssp             ---CCSHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             ChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence                      4566788888889988776665

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.39  E-value=0.0033  Score=61.46  Aligned_cols=83  Identities=10%  Similarity=0.071  Sum_probs=57.2

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcC-C--eEEEeeCCCCCC-ce----e------------cCcccccCHHHhhccCCCcE
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYG-T--KMVGGVTPKKGG-TE----H------------LGLPVFNTVAEAKAETKANA  102 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G-~--~vv~~VnP~~~g-~~----i------------~G~p~y~sl~dip~~~~vDl  102 (340)
                      .+|+|+|+ |.+|+.+++.|.+.| .  +++ .++.+... ++    +            ..+.-+.+++++.+..++|+
T Consensus         2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~-v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~Dv   79 (405)
T 4ina_A            2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHIT-LASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQI   79 (405)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTCTTTCCEEE-EEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCceEEE-EEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence            36788899 899999999999876 2  433 44443210 11    1            01111345666655334899


Q ss_pred             EEEecChhhHHHHHHHHHHcCCcEE
Q 019500          103 SAIYVPPPFAAAAILEAMEAELDLV  127 (340)
Q Consensus       103 avi~vp~~~v~~~v~ea~~~Gvk~v  127 (340)
                      +|.++|+....++++.|++.|++.+
T Consensus        80 Vin~ag~~~~~~v~~a~l~~g~~vv  104 (405)
T 4ina_A           80 VLNIALPYQDLTIMEACLRTGVPYL  104 (405)
T ss_dssp             EEECSCGGGHHHHHHHHHHHTCCEE
T ss_pred             EEECCCcccChHHHHHHHHhCCCEE
Confidence            9999999989999999999999964

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.38  E-value=0.013  Score=51.22  Aligned_cols=86  Identities=13%  Similarity=0.101  Sum_probs=58.6

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeC-CCCCCceecCcccc--------cCHHHhhccCCCcEEEEecChh----
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEHLGLPVF--------NTVAEAKAETKANASAIYVPPP----  110 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~Vn-P~~~g~~i~G~p~y--------~sl~dip~~~~vDlavi~vp~~----  110 (340)
                      +|+|.|++|.+|+.+++.|.+.|++++.... +... .+..++..+        .++.++.+  ++|++|-+....    
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~--~~d~vi~~ag~~~~~~   78 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQV-PQYNNVKAVHFDVDWTPEEMAKQLH--GMDAIINVSGSGGKSL   78 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGS-CCCTTEEEEECCTTSCHHHHHTTTT--TCSEEEECCCCTTSSC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccch-hhcCCceEEEecccCCHHHHHHHHc--CCCEEEECCcCCCCCc
Confidence            6889999999999999999999999774432 2211 111233222        23333443  599999887543    


Q ss_pred             ------hHHHHHHHHHHcCCcEEEEecC
Q 019500          111 ------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       111 ------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                            ....+++.|.+.|++.+|.+++
T Consensus        79 ~~~n~~~~~~l~~a~~~~~~~~iv~~SS  106 (219)
T 3dqp_A           79 LKVDLYGAVKLMQAAEKAEVKRFILLST  106 (219)
T ss_dssp             CCCCCHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EeEeHHHHHHHHHHHHHhCCCEEEEECc
Confidence                  2667888888899988776676

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.33  E-value=0.0095  Score=57.52  Aligned_cols=91  Identities=10%  Similarity=0.015  Sum_probs=64.8

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcC-CeEEEeeCCCCCCceec--------Cccccc-CHHHhhccCCCcEEEEecCh
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGGTEHL--------GLPVFN-TVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G-~~vv~~VnP~~~g~~i~--------G~p~y~-sl~dip~~~~vDlavi~vp~  109 (340)
                      ..+|+|.|+|+||-.|..+.+.|.++. +++...-..+..|+.+.        .+++-+ +.+++..  ++|+++.++|.
T Consensus        11 ~~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~--~~Dvvf~alp~   88 (351)
T 1vkn_A           11 HHMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSK--NCDVLFTALPA   88 (351)
T ss_dssp             -CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHH--HCSEEEECCST
T ss_pred             cceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhc--CCCEEEECCCc
Confidence            357899999999999999999999874 45664444454555443        122221 3444423  48999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCC
Q 019500          110 PFAAAAILEAMEAELDLVVCITEGIP  135 (340)
Q Consensus       110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~  135 (340)
                      ....+.+.++  +|++. |-.++.|.
T Consensus        89 ~~s~~~~~~~--~g~~V-IDlSsdfR  111 (351)
T 1vkn_A           89 GASYDLVREL--KGVKI-IDLGADFR  111 (351)
T ss_dssp             THHHHHHTTC--CSCEE-EESSSTTT
T ss_pred             HHHHHHHHHh--CCCEE-EECChhhh
Confidence            9999999888  78874 66777774

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=96.29  E-value=0.014  Score=51.69  Aligned_cols=86  Identities=16%  Similarity=0.129  Sum_probs=61.2

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHh---hccCCCcEEEEecChhh-HHHHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEA---KAETKANASAIYVPPPF-AAAAILEA  119 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~di---p~~~~vDlavi~vp~~~-v~~~v~ea  119 (340)
                      +++|+|| |..|+.+++.+++.+|++++.+|.+....++.|+|++...+++   .++ .+|.+++++|... -.++.+.+
T Consensus        14 ~v~IiGA-Gg~g~~v~~~l~~~~~~~vgfiDd~~~~~~~~g~~Vlg~~~~~~~~~~~-~~~~v~iAIg~~~~R~~i~~~l   91 (220)
T 4ea9_A           14 GVVIIGG-GGHAKVVIESLRACGETVAAIVDADPTRRAVLGVPVVGDDLALPMLREQ-GLSRLFVAIGDNRLRQKLGRKA   91 (220)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCEEEEECSCC---CBTTBCEEESGGGHHHHHHT-TCCEEEECCCCHHHHHHHHHHH
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCCEEEEEEeCCcccCcCCCeeEECCHHHHHHhhcc-cccEEEEecCCHHHHHHHHHHH
Confidence            5788899 7788999998888899988888865532458999999765544   332 4678888988644 45567777


Q ss_pred             HHcCCcEEEEec
Q 019500          120 MEAELDLVVCIT  131 (340)
Q Consensus       120 ~~~Gvk~vvi~t  131 (340)
                      .+.|++...++.
T Consensus        92 ~~~g~~~~~~i~  103 (220)
T 4ea9_A           92 RDHGFSLVNAIH  103 (220)
T ss_dssp             HHTTCEECCEEC
T ss_pred             HhcCCCcCCcCC
Confidence            788876543333

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=96.28  E-value=0.0098  Score=56.95  Aligned_cols=89  Identities=12%  Similarity=0.054  Sum_probs=61.5

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcC---CeEEEeeCCCCCCce--ecCc--cccc-CHHHhhccCCCcEEEEecChhhHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYG---TKMVGGVTPKKGGTE--HLGL--PVFN-TVAEAKAETKANASAIYVPPPFAAA  114 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G---~~vv~~VnP~~~g~~--i~G~--p~y~-sl~dip~~~~vDlavi~vp~~~v~~  114 (340)
                      ++|.|+||+|..|+.+++.|.+.+   +++++..+++..|+.  +.|.  .+.. +.+++ .  ++|+++.++|.....+
T Consensus         7 ~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~g~~i~~~~~~~~~~-~--~~DvV~~a~g~~~s~~   83 (340)
T 2hjs_A            7 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDF-S--SVGLAFFAAAAEVSRA   83 (340)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCG-G--GCSEEEECSCHHHHHH
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccCCcceEEecCCHHHh-c--CCCEEEEcCCcHHHHH
Confidence            578888999999999999988543   456644444433332  2232  2211 11222 2  4899999999999999


Q ss_pred             HHHHHHHcCCcEEEEecCCCC
Q 019500          115 AILEAMEAELDLVVCITEGIP  135 (340)
Q Consensus       115 ~v~ea~~~Gvk~vvi~t~Gf~  135 (340)
                      .+..+.+.|++. |.+++-|.
T Consensus        84 ~a~~~~~aG~kv-Id~Sa~~r  103 (340)
T 2hjs_A           84 HAERARAAGCSV-IDLSGALE  103 (340)
T ss_dssp             HHHHHHHTTCEE-EETTCTTT
T ss_pred             HHHHHHHCCCEE-EEeCCCCC
Confidence            999999999984 66777665

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=96.25  E-value=0.0056  Score=58.82  Aligned_cols=90  Identities=10%  Similarity=0.075  Sum_probs=60.9

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcC-------CeEEEeeCCCCC-----C-cee----------------cCcccccCHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYG-------TKMVGGVTPKKG-----G-TEH----------------LGLPVFNTVAE   93 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G-------~~vv~~VnP~~~-----g-~~i----------------~G~p~y~sl~d   93 (340)
                      .+|.|+|+ |.||..++..|.+.|       +++. .++++..     - +.+                .++.+..++++
T Consensus        22 ~kI~iIGa-G~mG~alA~~L~~~G~~~~~~~~~V~-~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~e   99 (375)
T 1yj8_A           22 LKISILGS-GNWASAISKVVGTNAKNNYLFENEVR-MWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLAS   99 (375)
T ss_dssp             BCEEEECC-SHHHHHHHHHHHHHHHHCTTBCSCEE-EECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHH
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCccCCCCCeEE-EEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHH
Confidence            46778899 999999999998888       7754 4554331     0 001                13455567777


Q ss_pred             hhccCCCcEEEEecChhhHHHHHHHHHHc---CC---cEEEEecCCCCh
Q 019500           94 AKAETKANASAIYVPPPFAAAAILEAMEA---EL---DLVVCITEGIPQ  136 (340)
Q Consensus        94 ip~~~~vDlavi~vp~~~v~~~v~ea~~~---Gv---k~vvi~t~Gf~e  136 (340)
                      ..+  +.|++++++|+..+.+++++....   .+   ..++.++.|+..
T Consensus       100 a~~--~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~  146 (375)
T 1yj8_A          100 VIN--DADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIV  146 (375)
T ss_dssp             HHT--TCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEE
T ss_pred             HHc--CCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCcccc
Confidence            654  489999999999998888876540   22   245556668764

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=96.23  E-value=0.012  Score=56.33  Aligned_cols=91  Identities=18%  Similarity=0.078  Sum_probs=62.5

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcC---CeEEEeeCCCCCCce--ecCcc-cccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYG---TKMVGGVTPKKGGTE--HLGLP-VFNTVAEAKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G---~~vv~~VnP~~~g~~--i~G~p-~y~sl~dip~~~~vDlavi~vp~~~v~~~  115 (340)
                      +++|.|+||+|..|+.+.+.|.+.+   +++++..+++..|+.  +.|.. .+.+++.-+- .++|+++.|+|.....+.
T Consensus         3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~~~~-~~vDvVf~a~g~~~s~~~   81 (336)
T 2r00_A            3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDW-SQVHIALFSAGGELSAKW   81 (336)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGGCCG-GGCSEEEECSCHHHHHHH
T ss_pred             ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCChHHh-cCCCEEEECCCchHHHHH
Confidence            5789999999999999999988863   456655545443332  22322 1122221111 158999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCCC
Q 019500          116 ILEAMEAELDLVVCITEGI  134 (340)
Q Consensus       116 v~ea~~~Gvk~vvi~t~Gf  134 (340)
                      +..+.+.|++. |..++-|
T Consensus        82 a~~~~~~G~~v-Id~s~~~   99 (336)
T 2r00_A           82 APIAAEAGVVV-IDNTSHF   99 (336)
T ss_dssp             HHHHHHTTCEE-EECSSTT
T ss_pred             HHHHHHcCCEE-EEcCCcc
Confidence            99999999964 5566655

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=96.21  E-value=0.012  Score=56.43  Aligned_cols=108  Identities=19%  Similarity=0.175  Sum_probs=64.7

Q ss_pred             eEEEEeCCCCCcchHHHHHHH-HcCCeEEEeeCCCCCCce---ecCcccccCHHHhhccCCCcEEEEecChhh-HHHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAI-EYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAIL  117 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~-~~G~~vv~~VnP~~~g~~---i~G~p~y~sl~dip~~~~vDlavi~vp~~~-v~~~v~  117 (340)
                      .+|.|+|. |++|+.+++.+. .+|++++ ..||.....+   -.|+....+++++..  ..|++++++|... ...++.
T Consensus       164 ~~vgIIG~-G~IG~~vA~~l~~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvVil~vp~~~~t~~li~  239 (348)
T 2w2k_A          164 HVLGAVGL-GAIQKEIARKAVHGLGMKLV-YYDVAPADAETEKALGAERVDSLEELAR--RSDCVSVSVPYMKLTHHLID  239 (348)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCEEE-EECSSCCCHHHHHHHTCEECSSHHHHHH--HCSEEEECCCCSGGGTTCBC
T ss_pred             CEEEEEEE-CHHHHHHHHHHHHhcCCEEE-EECCCCcchhhHhhcCcEEeCCHHHHhc--cCCEEEEeCCCChHHHHHhh
Confidence            35667799 999999999999 8999866 6776542111   136655568988776  4899999999853 333331


Q ss_pred             -HHH-HcCCcEEE-EecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          118 -EAM-EAELDLVV-CITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       118 -ea~-~~Gvk~vv-i~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                       +.. ...-..++ ..+.| +..+.+++.+++ ++..+.-.|
T Consensus       240 ~~~l~~mk~gailin~srg-~~vd~~aL~~aL-~~~~i~gag  279 (348)
T 2w2k_A          240 EAFFAAMKPGSRIVNTARG-PVISQDALIAAL-KSGKLLSAG  279 (348)
T ss_dssp             HHHHHHSCTTEEEEECSCG-GGBCHHHHHHHH-HTTSEEEEE
T ss_pred             HHHHhcCCCCCEEEECCCC-chhCHHHHHHHH-HhCCceEEE
Confidence             222 22333433 33334 223344555555 444444333

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.17  E-value=0.018  Score=50.77  Aligned_cols=89  Identities=18%  Similarity=0.191  Sum_probs=58.9

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee--cCc-ccc-----cCHHHhhccCCCcEEEEecChh-
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGL-PVF-----NTVAEAKAETKANASAIYVPPP-  110 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i--~G~-p~y-----~sl~dip~~~~vDlavi~vp~~-  110 (340)
                      +..+|+|.|++|.+|+.+++.|.+.|++++.. ..+... ++.  .++ ..+     .++.+...  ++|++|-+.... 
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~-~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~--~~D~vi~~ag~~~   96 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAM-VRNEEQGPELRERGASDIVVANLEEDFSHAFA--SIDAVVFAAGSGP   96 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ESSGGGHHHHHHTTCSEEEECCTTSCCGGGGT--TCSEEEECCCCCT
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEE-ECChHHHHHHHhCCCceEEEcccHHHHHHHHc--CCCEEEECCCCCC
Confidence            45578889999999999999999999987643 322200 111  122 222     34455544  699999877532 


Q ss_pred             -------------hHHHHHHHHHHcCCcEEEEecC
Q 019500          111 -------------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       111 -------------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                                   ....+++.|.+.|++.+|.+++
T Consensus        97 ~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS  131 (236)
T 3e8x_A           97 HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSS  131 (236)
T ss_dssp             TSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             CCCccccchhhHHHHHHHHHHHHHcCCCEEEEEec
Confidence                         2456788888889988776666

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.16  E-value=0.024  Score=56.24  Aligned_cols=96  Identities=16%  Similarity=0.179  Sum_probs=65.3

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee-------------------------cCcccccCHHHhhcc
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-------------------------LGLPVFNTVAEAKAE   97 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i-------------------------~G~p~y~sl~dip~~   97 (340)
                      ++|.|+|+ |.+|...+..|.+.|++++ .+|.+.  +.+                         ..+....++++..+ 
T Consensus         3 mkI~VIG~-G~vG~~lA~~La~~G~~V~-~~D~~~--~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~-   77 (450)
T 3gg2_A            3 LDIAVVGI-GYVGLVSATCFAELGANVR-CIDTDR--NKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVP-   77 (450)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCH--HHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGG-
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCCEEE-EEECCH--HHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHh-
Confidence            46778899 9999999999999999866 555442  110                         12345567777555 


Q ss_pred             CCCcEEEEecChh----------hHHHHHHHHHHc-CCcEEEEecCCCChhhHHHHHH
Q 019500           98 TKANASAIYVPPP----------FAAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKA  144 (340)
Q Consensus        98 ~~vDlavi~vp~~----------~v~~~v~ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~  144 (340)
                       +.|++++++|..          .+.+++++..+. .-..+|+..+.++....+++.+
T Consensus        78 -~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~  134 (450)
T 3gg2_A           78 -EADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRK  134 (450)
T ss_dssp             -GCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHH
T ss_pred             -cCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHH
Confidence             489999999887          788888777664 2345566666666544444433

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.10  E-value=0.0071  Score=57.42  Aligned_cols=67  Identities=13%  Similarity=0.146  Sum_probs=48.5

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccc---cCHHHhhccCCCcEEEEecCh-hhHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF---NTVAEAKAETKANASAIYVPP-PFAAAAI  116 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y---~sl~dip~~~~vDlavi~vp~-~~v~~~v  116 (340)
                      +|.|+|. |++|+.+++.+..+|++++ ..|+..  +...++..+   .+++++..  ..|++++++|. +....++
T Consensus       141 tvGIiG~-G~IG~~vA~~l~~~G~~V~-~~dr~~--~~~~~~~~~~~~~~l~ell~--~aDiV~l~~Plt~~t~~li  211 (315)
T 3pp8_A          141 SVGIMGA-GVLGAKVAESLQAWGFPLR-CWSRSR--KSWPGVESYVGREELRAFLN--QTRVLINLLPNTAQTVGII  211 (315)
T ss_dssp             CEEEECC-SHHHHHHHHHHHTTTCCEE-EEESSC--CCCTTCEEEESHHHHHHHHH--TCSEEEECCCCCGGGTTCB
T ss_pred             EEEEEee-CHHHHHHHHHHHHCCCEEE-EEcCCc--hhhhhhhhhcccCCHHHHHh--hCCEEEEecCCchhhhhhc
Confidence            4566699 9999999999999999966 566544  333444333   57888886  58999999994 3444444

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=96.06  E-value=0.011  Score=55.74  Aligned_cols=68  Identities=19%  Similarity=0.228  Sum_probs=50.8

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhh-HHHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAI  116 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~-v~~~v  116 (340)
                      ..+|.|+|. |++|+.+++.+..+|++++ ..||... +.  +...+.+++++..  ..|++++++|... ...++
T Consensus       124 g~~vgIIG~-G~IG~~~A~~l~~~G~~V~-~~dr~~~-~~--~~~~~~~l~ell~--~aDvV~l~~P~~~~t~~~i  192 (303)
T 1qp8_A          124 GEKVAVLGL-GEIGTRVGKILAALGAQVR-GFSRTPK-EG--PWRFTNSLEEALR--EARAAVCALPLNKHTRGLV  192 (303)
T ss_dssp             TCEEEEESC-STHHHHHHHHHHHTTCEEE-EECSSCC-CS--SSCCBSCSHHHHT--TCSEEEECCCCSTTTTTCB
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHHCCCEEE-EECCCcc-cc--CcccCCCHHHHHh--hCCEEEEeCcCchHHHHHh
Confidence            335677799 9999999999999999866 6777652 22  4445678989876  5899999999763 44444

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=96.06  E-value=0.0045  Score=55.00  Aligned_cols=89  Identities=15%  Similarity=0.073  Sum_probs=59.0

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccCCCcEEEEecChhhHHHHHH-
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAIL-  117 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~-  117 (340)
                      ..+|.|+|+ |++|+.+++.+.+.|++++ .++++... +.  -.|+..+ ++.++.+  +.|++++++|+....++++ 
T Consensus        28 ~~~I~iiG~-G~~G~~la~~l~~~g~~V~-~~~r~~~~~~~~~~~g~~~~-~~~~~~~--~~DvVi~av~~~~~~~v~~l  102 (215)
T 2vns_A           28 APKVGILGS-GDFARSLATRLVGSGFKVV-VGSRNPKRTARLFPSAAQVT-FQEEAVS--SPEVIFVAVFREHYSSLCSL  102 (215)
T ss_dssp             -CCEEEECC-SHHHHHHHHHHHHTTCCEE-EEESSHHHHHHHSBTTSEEE-EHHHHTT--SCSEEEECSCGGGSGGGGGG
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHcCCcee-cHHHHHh--CCCEEEECCChHHHHHHHHH
Confidence            356778896 9999999999999998855 56654310 11  1255554 6777665  5999999999977655543 


Q ss_pred             -HHHHcCCcEEEEecCCCChh
Q 019500          118 -EAMEAELDLVVCITEGIPQH  137 (340)
Q Consensus       118 -ea~~~Gvk~vvi~t~Gf~e~  137 (340)
                       ... .+ +.++.+++|.+.+
T Consensus       103 ~~~~-~~-~~vv~~s~g~~~~  121 (215)
T 2vns_A          103 SDQL-AG-KILVDVSNPTEQE  121 (215)
T ss_dssp             HHHH-TT-CEEEECCCCCHHH
T ss_pred             HHhc-CC-CEEEEeCCCcccc
Confidence             222 23 3556677887543

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.05  E-value=0.0094  Score=55.41  Aligned_cols=90  Identities=11%  Similarity=0.001  Sum_probs=57.5

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee----------------------------------cCccc
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH----------------------------------LGLPV   87 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i----------------------------------~G~p~   87 (340)
                      ..+|.|+|+ |.||..++..+.+.|++++ .+|++.  +..                                  ..+..
T Consensus        15 ~~~I~VIG~-G~mG~~iA~~la~~G~~V~-~~d~~~--~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~   90 (302)
T 1f0y_A           15 VKHVTVIGG-GLMGAGIAQVAAATGHTVV-LVDQTE--DILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT   90 (302)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCH--HHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEE-EEECCH--HHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE
Confidence            346778899 9999999999999999865 666653  111                                  12344


Q ss_pred             ccCHHHhhccCCCcEEEEecChhh--HHHHHHHHHHcC-CcEEEE-ecCCCChh
Q 019500           88 FNTVAEAKAETKANASAIYVPPPF--AAAAILEAMEAE-LDLVVC-ITEGIPQH  137 (340)
Q Consensus        88 y~sl~dip~~~~vDlavi~vp~~~--v~~~v~ea~~~G-vk~vvi-~t~Gf~e~  137 (340)
                      ..++++...  +.|++|+++|.+.  ..+++++..+.- -+.+++ .+++++.+
T Consensus        91 ~~~~~~~~~--~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~  142 (302)
T 1f0y_A           91 STDAASVVH--STDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQIT  142 (302)
T ss_dssp             ESCHHHHTT--SCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHH
T ss_pred             ecCHHHhhc--CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHH
Confidence            567775554  5899999999864  334555543321 123333 46787644

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.03  E-value=0.0069  Score=56.00  Aligned_cols=89  Identities=16%  Similarity=0.094  Sum_probs=60.3

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee------------------------------cCcccccCHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH------------------------------LGLPVFNTVAE   93 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i------------------------------~G~p~y~sl~d   93 (340)
                      +|.|+|+ |.||..+++.+.+.|++++ .+|++.  +..                              ..+....++++
T Consensus         6 kV~VIGa-G~mG~~iA~~la~~G~~V~-l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~   81 (283)
T 4e12_A            6 NVTVLGT-GVLGSQIAFQTAFHGFAVT-AYDINT--DALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQ   81 (283)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSH--HHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHH
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCeEE-EEeCCH--HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHH
Confidence            5677799 9999999999999999855 566553  211                              01345567877


Q ss_pred             hhccCCCcEEEEecChh--hHHHHHHHHHHc-CCcEEEE-ecCCCChhh
Q 019500           94 AKAETKANASAIYVPPP--FAAAAILEAMEA-ELDLVVC-ITEGIPQHD  138 (340)
Q Consensus        94 ip~~~~vDlavi~vp~~--~v~~~v~ea~~~-Gvk~vvi-~t~Gf~e~~  138 (340)
                      ...  +.|++|.++|..  ...+++++..+. .-..+++ .|++.+.++
T Consensus        82 ~~~--~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~  128 (283)
T 4e12_A           82 AVK--DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSD  128 (283)
T ss_dssp             HTT--TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHH
T ss_pred             Hhc--cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence            654  589999999986  666666666554 2333443 567776443

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=95.97  E-value=0.026  Score=55.45  Aligned_cols=88  Identities=19%  Similarity=0.158  Sum_probs=56.7

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee---------------------cC-cccccCHHHhhccCCC
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---------------------LG-LPVFNTVAEAKAETKA  100 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i---------------------~G-~p~y~sl~dip~~~~v  100 (340)
                      +|.|+|+ |.+|..++..|.+.|++++ .++.+... +.+                     .| +....++++...  +.
T Consensus         2 kI~VIG~-G~vG~~~A~~la~~G~~V~-~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~--~a   77 (436)
T 1mv8_A            2 RISIFGL-GYVGAVCAGCLSARGHEVI-GVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL--DS   77 (436)
T ss_dssp             EEEEECC-STTHHHHHHHHHHTTCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH--TC
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhc--cC
Confidence            5677798 9999999999999999865 55553200 000                     22 445567776554  48


Q ss_pred             cEEEEecChhh----------HHHHHHHHHHc-CC---cEEEEecCCCC
Q 019500          101 NASAIYVPPPF----------AAAAILEAMEA-EL---DLVVCITEGIP  135 (340)
Q Consensus       101 Dlavi~vp~~~----------v~~~v~ea~~~-Gv---k~vvi~t~Gf~  135 (340)
                      |++++++|...          +.+++++..+. .-   ..+|+..+..+
T Consensus        78 DvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~  126 (436)
T 1mv8_A           78 DVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVL  126 (436)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCC
T ss_pred             CEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcC
Confidence            99999998765          77777665542 22   23444544444

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.95  E-value=0.027  Score=56.31  Aligned_cols=101  Identities=18%  Similarity=0.128  Sum_probs=65.7

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee--c-------C-------------cccccCHHHhhcc
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--L-------G-------------LPVFNTVAEAKAE   97 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i--~-------G-------------~p~y~sl~dip~~   97 (340)
                      -+++|.|+|+ |.+|...+..|.+.|++++ .+|.+... +.+  .       |             +....++++..+ 
T Consensus         7 ~~~~I~VIG~-G~vG~~lA~~la~~G~~V~-~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~-   83 (478)
T 2y0c_A            7 GSMNLTIIGS-GSVGLVTGACLADIGHDVF-CLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVA-   83 (478)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHH-
T ss_pred             CCceEEEECc-CHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhh-
Confidence            4778899999 9999999999999999865 55543200 011  1       1             233345655444 


Q ss_pred             CCCcEEEEecCh----------hhHHHHHHHHHHc-CCcEEEEecCCCChhhHHHHHHH
Q 019500           98 TKANASAIYVPP----------PFAAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKAA  145 (340)
Q Consensus        98 ~~vDlavi~vp~----------~~v~~~v~ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~  145 (340)
                       +.|++++++|.          ..+.+++++..+. .-..+|+..++++....+++.+.
T Consensus        84 -~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~gt~~~l~~~  141 (478)
T 2y0c_A           84 -HGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERVRAA  141 (478)
T ss_dssp             -HCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHH
T ss_pred             -cCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCCchHHHHHH
Confidence             38999999998          7888888776653 33455666677755443334333

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=95.91  E-value=0.033  Score=50.52  Aligned_cols=88  Identities=13%  Similarity=0.116  Sum_probs=57.7

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee--c---Cc----c-cccCHHHhhccCCCcEEEEecChhhH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--L---GL----P-VFNTVAEAKAETKANASAIYVPPPFA  112 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i--~---G~----p-~y~sl~dip~~~~vDlavi~vp~~~v  112 (340)
                      +|.|+|+ |.+|...+..|.+.|+++. .++++... +.+  .   |.    . ...+.+.+ +  +.|++++++|+..+
T Consensus         2 ~i~iiG~-G~~G~~~a~~l~~~g~~V~-~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~--~~d~vi~~v~~~~~   76 (291)
T 1ks9_A            2 KITVLGC-GALGQLWLTALCKQGHEVQ-GWLRVPQPYCSVNLVETDGSIFNESLTANDPDFL-A--TSDLLLVTLKAWQV   76 (291)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCSEEEEEEECTTSCEEEEEEEESCHHHH-H--TCSEEEECSCGGGH
T ss_pred             eEEEECc-CHHHHHHHHHHHhCCCCEE-EEEcCccceeeEEEEcCCCceeeeeeeecCcccc-C--CCCEEEEEecHHhH
Confidence            5778899 9999999999999999855 55554310 111  1   21    0 12333333 3  48999999999999


Q ss_pred             HHHHHHHHHc-C-CcEEEEecCCCCh
Q 019500          113 AAAILEAMEA-E-LDLVVCITEGIPQ  136 (340)
Q Consensus       113 ~~~v~ea~~~-G-vk~vvi~t~Gf~e  136 (340)
                      .+++++.... + -..++.++.|+..
T Consensus        77 ~~v~~~l~~~l~~~~~vv~~~~g~~~  102 (291)
T 1ks9_A           77 SDAVKSLASTLPVTTPILLIHNGMGT  102 (291)
T ss_dssp             HHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred             HHHHHHHHhhCCCCCEEEEecCCCCc
Confidence            8888776543 1 1235556888843

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=95.91  E-value=0.021  Score=56.09  Aligned_cols=104  Identities=13%  Similarity=0.062  Sum_probs=65.0

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChh-hHHHHH-H-H
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAI-L-E  118 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~-~v~~~v-~-e  118 (340)
                      ..+|.|+|. |++|+.+++.+..+|++++ ..||... ....+...+.+++++..  ..|++++++|.. .+..++ + .
T Consensus       145 gktlGiIGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~-~~~~~~~~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~~  219 (404)
T 1sc6_A          145 GKKLGIIGY-GHIGTQLGILAESLGMYVY-FYDIENK-LPLGNATQVQHLSDLLN--MSDVVSLHVPENPSTKNMMGAKE  219 (404)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCC-CCCTTCEECSCHHHHHH--HCSEEEECCCSSTTTTTCBCHHH
T ss_pred             CCEEEEEeE-CHHHHHHHHHHHHCCCEEE-EEcCCch-hccCCceecCCHHHHHh--cCCEEEEccCCChHHHHHhhHHH
Confidence            335677799 9999999999999999966 6787642 22334555679999987  489999999975 233333 1 2


Q ss_pred             HHHcCCcEE-EEecCCCChhhHHHHHHHHhccCCc
Q 019500          119 AMEAELDLV-VCITEGIPQHDMVRVKAALNNQSKT  152 (340)
Q Consensus       119 a~~~Gvk~v-vi~t~Gf~e~~~~~l~~~aar~~gi  152 (340)
                      .....-..+ |..+.|- -.+.++|.+++ ++.++
T Consensus       220 l~~mk~ga~lIN~aRg~-~vd~~aL~~aL-~~g~i  252 (404)
T 1sc6_A          220 ISLMKPGSLLINASRGT-VVDIPALADAL-ASKHL  252 (404)
T ss_dssp             HHHSCTTEEEEECSCSS-SBCHHHHHHHH-HTTSE
T ss_pred             HhhcCCCeEEEECCCCh-HHhHHHHHHHH-HcCCc
Confidence            222333333 4444443 23334555554 44433

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=95.91  E-value=0.016  Score=50.61  Aligned_cols=84  Identities=12%  Similarity=0.041  Sum_probs=56.3

Q ss_pred             EEEeCCCCCcchHHHHHHH-HcCCeEEEee-CCC-CCCce----ecCccc-------ccCHHHhhccCCCcEEEEecCh-
Q 019500           45 VICQGITGKNGTFHTEQAI-EYGTKMVGGV-TPK-KGGTE----HLGLPV-------FNTVAEAKAETKANASAIYVPP-  109 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~-~~G~~vv~~V-nP~-~~g~~----i~G~p~-------y~sl~dip~~~~vDlavi~vp~-  109 (340)
                      |+|.|++|.+|+.+++.|. +.|++++... +|. .. ++    -.++..       ..++.++.+  ++|++|.+... 
T Consensus         8 vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~vv~~ag~~   84 (221)
T 3r6d_A            8 ITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRI-PPEIIDHERVTVIEGSFQNPGXLEQAVT--NAEVVFVGAMES   84 (221)
T ss_dssp             EEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHS-CHHHHTSTTEEEEECCTTCHHHHHHHHT--TCSEEEESCCCC
T ss_pred             EEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccc-hhhccCCCceEEEECCCCCHHHHHHHHc--CCCEEEEcCCCC
Confidence            7888999999999999999 7899866332 222 10 11    112222       224555554  68999987754 


Q ss_pred             --hhHHHHHHHHHHcCCcEEEEecC
Q 019500          110 --PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       110 --~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                        + ...+++.+.+.|++.+|.+++
T Consensus        85 n~~-~~~~~~~~~~~~~~~iv~iSs  108 (221)
T 3r6d_A           85 GSD-MASIVKALSRXNIRRVIGVSM  108 (221)
T ss_dssp             HHH-HHHHHHHHHHTTCCEEEEEEE
T ss_pred             Chh-HHHHHHHHHhcCCCeEEEEee
Confidence              3 566777788889988776665

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=95.91  E-value=0.024  Score=51.57  Aligned_cols=73  Identities=8%  Similarity=-0.053  Sum_probs=53.1

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHH
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea  119 (340)
                      |...+|.|+|+ |++|..+.+.|.+.|++++ .++..               +++.   +.|  ++++|.+.+.+++++.
T Consensus         4 ~~~mkI~IIG~-G~~G~sLA~~L~~~G~~V~-~~~~~---------------~~~~---~aD--ilavP~~ai~~vl~~l   61 (232)
T 3dfu_A            4 APRLRVGIFDD-GSSTVNMAEKLDSVGHYVT-VLHAP---------------EDIR---DFE--LVVIDAHGVEGYVEKL   61 (232)
T ss_dssp             CCCCEEEEECC-SCCCSCHHHHHHHTTCEEE-ECSSG---------------GGGG---GCS--EEEECSSCHHHHHHHH
T ss_pred             CCCcEEEEEee-CHHHHHHHHHHHHCCCEEE-EecCH---------------HHhc---cCC--EEEEcHHHHHHHHHHH
Confidence            44567888899 9999999999999999866 55541               2333   378  9999999999999887


Q ss_pred             HHcC-CcEEEEecCCC
Q 019500          120 MEAE-LDLVVCITEGI  134 (340)
Q Consensus       120 ~~~G-vk~vvi~t~Gf  134 (340)
                      ...- -..+|+-++|-
T Consensus        62 ~~~l~~g~ivvd~sgs   77 (232)
T 3dfu_A           62 SAFARRGQMFLHTSLT   77 (232)
T ss_dssp             HTTCCTTCEEEECCSS
T ss_pred             HHhcCCCCEEEEECCc
Confidence            6532 23445444554

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.91  E-value=0.012  Score=50.84  Aligned_cols=86  Identities=13%  Similarity=0.094  Sum_probs=49.4

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee-cCccccc-CHHH----hhccCCCcEEEEecCh-------
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH-LGLPVFN-TVAE----AKAETKANASAIYVPP-------  109 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i-~G~p~y~-sl~d----ip~~~~vDlavi~vp~-------  109 (340)
                      +|+|.|++|.+|+.+++.|.+.|++++.. ..+... .+. .++..+. ++.+    ..+  ++|++|-+...       
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~-~R~~~~~~~~~~~~~~~~~D~~d~~~~~~~--~~d~vi~~ag~~~~~~~~   78 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAI-VRNAGKITQTHKDINILQKDIFDLTLSDLS--DQNVVVDAYGISPDEAEK   78 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEE-ESCSHHHHHHCSSSEEEECCGGGCCHHHHT--TCSEEEECCCSSTTTTTS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEE-EcCchhhhhccCCCeEEeccccChhhhhhc--CCCEEEECCcCCccccch
Confidence            68899999999999999999999987743 322200 000 1222221 2222    222  47777776643       


Q ss_pred             --hhHHHHHHHHHHcCCcEEEEecC
Q 019500          110 --PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       110 --~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                        .....+++.|.+.|++.+|++++
T Consensus        79 ~~~~~~~l~~a~~~~~~~~~v~~SS  103 (221)
T 3ew7_A           79 HVTSLDHLISVLNGTVSPRLLVVGG  103 (221)
T ss_dssp             HHHHHHHHHHHHCSCCSSEEEEECC
T ss_pred             HHHHHHHHHHHHHhcCCceEEEEec
Confidence              23344555555555666555554

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=95.88  E-value=0.019  Score=52.07  Aligned_cols=86  Identities=21%  Similarity=0.205  Sum_probs=58.7

Q ss_pred             EEEEeCCCCCcchHHHHHHHHc-CCeEEEee-CCCCCCce--ecCcccc-------cCHHHhhccCCCcEEEEecCh---
Q 019500           44 RVICQGITGKNGTFHTEQAIEY-GTKMVGGV-TPKKGGTE--HLGLPVF-------NTVAEAKAETKANASAIYVPP---  109 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~-G~~vv~~V-nP~~~g~~--i~G~p~y-------~sl~dip~~~~vDlavi~vp~---  109 (340)
                      +|+|.|++|..|+.+++.|.+. |++++..+ +|... ..  -.++.++       .++.++.+  ++|.++.+...   
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~-~~~~~~~v~~~~~D~~d~~~l~~~~~--~~d~vi~~a~~~~~   78 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKV-PDDWRGKVSVRQLDYFNQESMVEAFK--GMDTVVFIPSIIHP   78 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGS-CGGGBTTBEEEECCTTCHHHHHHHTT--TCSEEEECCCCCCS
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHH-HHhhhCCCEEEEcCCCCHHHHHHHHh--CCCEEEEeCCCCcc
Confidence            5788899999999999998887 88876443 23221 11  1233322       23445554  69999988754   


Q ss_pred             -----hhHHHHHHHHHHcCCcEEEEecC
Q 019500          110 -----PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       110 -----~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                           .....+++.|.+.|++.+|.+++
T Consensus        79 ~~~~~~~~~~l~~aa~~~gv~~iv~~Ss  106 (289)
T 3e48_A           79 SFKRIPEVENLVYAAKQSGVAHIIFIGY  106 (289)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             chhhHHHHHHHHHHHHHcCCCEEEEEcc
Confidence                 45567888888999998776665

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.86  E-value=0.04  Score=51.44  Aligned_cols=88  Identities=10%  Similarity=0.065  Sum_probs=60.7

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC------Cceec---------CcccccCHHHhhccCCCcEEEEecC
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG------GTEHL---------GLPVFNTVAEAKAETKANASAIYVP  108 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~------g~~i~---------G~p~y~sl~dip~~~~vDlavi~vp  108 (340)
                      +|.|+|+ |.+|......|.+.|+++. .++++..      |-.+.         .++++.+.+++.   +.|+++++||
T Consensus         4 kI~IiGa-GaiG~~~a~~L~~~g~~V~-~~~r~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~---~~D~vilavk   78 (312)
T 3hn2_A            4 RIAIVGA-GALGLYYGALLQRSGEDVH-FLLRRDYEAIAGNGLKVFSINGDFTLPHVKGYRAPEEIG---PMDLVLVGLK   78 (312)
T ss_dssp             CEEEECC-STTHHHHHHHHHHTSCCEE-EECSTTHHHHHHTCEEEEETTCCEEESCCCEESCHHHHC---CCSEEEECCC
T ss_pred             EEEEECc-CHHHHHHHHHHHHCCCeEE-EEEcCcHHHHHhCCCEEEcCCCeEEEeeceeecCHHHcC---CCCEEEEecC
Confidence            5677799 9999999999999898755 4554320      11111         223455676653   4899999999


Q ss_pred             hhhHHHHHHHHHHc-CC-cEEEEecCCCCh
Q 019500          109 PPFAAAAILEAMEA-EL-DLVVCITEGIPQ  136 (340)
Q Consensus       109 ~~~v~~~v~ea~~~-Gv-k~vvi~t~Gf~e  136 (340)
                      +....+++++.... +- ..++.++.|+..
T Consensus        79 ~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~  108 (312)
T 3hn2_A           79 TFANSRYEELIRPLVEEGTQILTLQNGLGN  108 (312)
T ss_dssp             GGGGGGHHHHHGGGCCTTCEEEECCSSSSH
T ss_pred             CCCcHHHHHHHHhhcCCCCEEEEecCCCCc
Confidence            99999888887643 21 356777889963

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=95.86  E-value=0.018  Score=54.41  Aligned_cols=89  Identities=12%  Similarity=0.084  Sum_probs=60.5

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcC-------CeEEEeeCCCCC------Ccee----------------cCcccccCHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYG-------TKMVGGVTPKKG------GTEH----------------LGLPVFNTVAE   93 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G-------~~vv~~VnP~~~------g~~i----------------~G~p~y~sl~d   93 (340)
                      .+|.|+|+ |.||..++..|.+.|       +++. .++++..      .+.+                .++....++++
T Consensus         9 mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~~V~-~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (354)
T 1x0v_A            9 KKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDPRVT-MWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQ   86 (354)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHHHHCTTEEEEEE-EECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHH
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEE-EEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHH
Confidence            46788899 999999999998887       6644 5555431      0011                12344567777


Q ss_pred             hhccCCCcEEEEecChhhHHHHHHHHHHc-C-CcEEEEecCCCC
Q 019500           94 AKAETKANASAIYVPPPFAAAAILEAMEA-E-LDLVVCITEGIP  135 (340)
Q Consensus        94 ip~~~~vDlavi~vp~~~v~~~v~ea~~~-G-vk~vvi~t~Gf~  135 (340)
                      ..+  +.|++++++|+..+.+++++.... . -..++.++.|+.
T Consensus        87 ~~~--~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           87 AAE--DADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HHT--TCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred             HHc--CCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence            654  589999999999988888776442 1 124566677875

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=95.86  E-value=0.018  Score=54.18  Aligned_cols=88  Identities=14%  Similarity=0.123  Sum_probs=59.4

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee---cCc--------------ccccCHHHhhccCCCcEEE
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---LGL--------------PVFNTVAEAKAETKANASA  104 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i---~G~--------------p~y~sl~dip~~~~vDlav  104 (340)
                      .+|.|+|+ |.+|..++..|.+.|+++. .++++... +.+   .|+              ..+.+++++.+  +.|+++
T Consensus         5 mki~iiG~-G~~G~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~vi   80 (359)
T 1bg6_A            5 KTYAVLGL-GNGGHAFAAYLALKGQSVL-AWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK--DADVIL   80 (359)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT--TCSEEE
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCCEEE-EEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHh--cCCEEE
Confidence            46788899 9999999999999999854 66654200 111   121              35668888654  589999


Q ss_pred             EecChhhHHHHHHHHHHc-CCcEEEEecCCC
Q 019500          105 IYVPPPFAAAAILEAMEA-ELDLVVCITEGI  134 (340)
Q Consensus       105 i~vp~~~v~~~v~ea~~~-Gvk~vvi~t~Gf  134 (340)
                      +++|+....+++++.... .-..+|+...|.
T Consensus        81 ~~v~~~~~~~~~~~l~~~l~~~~~vv~~~~~  111 (359)
T 1bg6_A           81 IVVPAIHHASIAANIASYISEGQLIILNPGA  111 (359)
T ss_dssp             ECSCGGGHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred             EeCCchHHHHHHHHHHHhCCCCCEEEEcCCC
Confidence            999999998888776543 223334444553

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.86  E-value=0.015  Score=54.56  Aligned_cols=110  Identities=19%  Similarity=0.180  Sum_probs=70.8

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce-------ec----------CcccccCHHHhhccCCCcEEEE
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-------HL----------GLPVFNTVAEAKAETKANASAI  105 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~-------i~----------G~p~y~sl~dip~~~~vDlavi  105 (340)
                      .+|.|+|+ |.+|......|.+.|+++. .++++.. +.       +.          .++++.+.+++.+  +.|++++
T Consensus         3 mkI~IiGa-GaiG~~~a~~L~~~g~~V~-~~~r~~~-~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~--~~DlVil   77 (320)
T 3i83_A            3 LNILVIGT-GAIGSFYGALLAKTGHCVS-VVSRSDY-ETVKAKGIRIRSATLGDYTFRPAAVVRSAAELET--KPDCTLL   77 (320)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHTTCEEE-EECSTTH-HHHHHHCEEEEETTTCCEEECCSCEESCGGGCSS--CCSEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCeEE-EEeCChH-HHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCC--CCCEEEE
Confidence            46778899 9999999999999898755 5554321 11       11          1334567777653  5899999


Q ss_pred             ecChhhHHHHHHHHHHc-C-CcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCC
Q 019500          106 YVPPPFAAAAILEAMEA-E-LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG  161 (340)
Q Consensus       106 ~vp~~~v~~~v~ea~~~-G-vk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~G  161 (340)
                      +||+....+++++.... + -..++.++.|+...+  .+.+.. ... --+-||...|
T Consensus        78 avK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~--~l~~~~-~~~-~vl~g~~~~~  131 (320)
T 3i83_A           78 CIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIEP--EVAAAF-PDN-EVISGLAFIG  131 (320)
T ss_dssp             CCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCSH--HHHHHS-TTS-CEEEEEEEEE
T ss_pred             ecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChHH--HHHHHC-CCC-cEEEEEEEec
Confidence            99999988888776532 1 135677889996432  233332 122 2355666554

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=95.84  E-value=0.02  Score=53.73  Aligned_cols=92  Identities=16%  Similarity=0.207  Sum_probs=60.8

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC------Ccee--------cCcccccCHHHhhccCCCcEEEEec
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG------GTEH--------LGLPVFNTVAEAKAETKANASAIYV  107 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~------g~~i--------~G~p~y~sl~dip~~~~vDlavi~v  107 (340)
                      ..+|.|+|+ |.+|...+..|.+.|+++....++...      |..+        ..+++..+.+++.   +.|++++++
T Consensus        19 ~~kI~IiGa-Ga~G~~~a~~L~~~G~~V~l~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~D~vilav   94 (318)
T 3hwr_A           19 GMKVAIMGA-GAVGCYYGGMLARAGHEVILIARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSAVQ---GADLVLFCV   94 (318)
T ss_dssp             -CEEEEESC-SHHHHHHHHHHHHTTCEEEEECCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGGGT---TCSEEEECC
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHCCCeEEEEEcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHHcC---CCCEEEEEc
Confidence            446677799 999999999999999885522333210      0001        1233445666543   589999999


Q ss_pred             ChhhHHHHHHHHHHc-C-CcEEEEecCCCChh
Q 019500          108 PPPFAAAAILEAMEA-E-LDLVVCITEGIPQH  137 (340)
Q Consensus       108 p~~~v~~~v~ea~~~-G-vk~vvi~t~Gf~e~  137 (340)
                      |+..+.+++++.... + -..++.++.|+..+
T Consensus        95 k~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~  126 (318)
T 3hwr_A           95 KSTDTQSAALAMKPALAKSALVLSLQNGVENA  126 (318)
T ss_dssp             CGGGHHHHHHHHTTTSCTTCEEEEECSSSSHH
T ss_pred             ccccHHHHHHHHHHhcCCCCEEEEeCCCCCcH
Confidence            999998888876543 1 13466688999754

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=95.84  E-value=0.029  Score=47.71  Aligned_cols=87  Identities=20%  Similarity=0.155  Sum_probs=57.3

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC-CCCCCce--ecCccc-------ccCHHHhhccCCCcEEEEecChh--
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTE--HLGLPV-------FNTVAEAKAETKANASAIYVPPP--  110 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn-P~~~g~~--i~G~p~-------y~sl~dip~~~~vDlavi~vp~~--  110 (340)
                      .+|+|.|++|.+|+.+++.|.+.|++++.... |... .+  ..++..       ..++.++.+  ++|+++-+....  
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~~~~   80 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL-PSEGPRPAHVVVGDVLQAADVDKTVA--GQDAVIVLLGTRND   80 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS-CSSSCCCSEEEESCTTSHHHHHHHHT--TCSEEEECCCCTTC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhc-ccccCCceEEEEecCCCHHHHHHHHc--CCCEEEECccCCCC
Confidence            36888999999999999999999998764322 2110 01  112221       224555554  589999876542  


Q ss_pred             ---------hHHHHHHHHHHcCCcEEEEecC
Q 019500          111 ---------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       111 ---------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                               ....+++.|.+.+++.++.+++
T Consensus        81 ~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss  111 (206)
T 1hdo_A           81 LSPTTVMSEGARNIVAAMKAHGVDKVVACTS  111 (206)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             CCccchHHHHHHHHHHHHHHhCCCeEEEEee
Confidence                     3567778888889988776665

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.79  E-value=0.064  Score=44.55  Aligned_cols=90  Identities=13%  Similarity=0.077  Sum_probs=55.3

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCcccc-cC---HHHhhcc--CCCcEEEEecChhhH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVF-NT---VAEAKAE--TKANASAIYVPPPFA  112 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~---i~G~p~y-~s---l~dip~~--~~vDlavi~vp~~~v  112 (340)
                      .+|+|+|+ |.+|..+++.|.+.|++++ .++++... +.   -.|..++ .+   .+.+.+.  .+.|++++++|....
T Consensus        20 ~~v~IiG~-G~iG~~la~~L~~~g~~V~-vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~~   97 (155)
T 2g1u_A           20 KYIVIFGC-GRLGSLIANLASSSGHSVV-VVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDST   97 (155)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHHH
T ss_pred             CcEEEECC-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCcHH
Confidence            46778898 9999999999999999855 55443210 11   1233322 22   2222110  148999999998777


Q ss_pred             HHHHHHHHH--cCCcEEEEecCCC
Q 019500          113 AAAILEAME--AELDLVVCITEGI  134 (340)
Q Consensus       113 ~~~v~ea~~--~Gvk~vvi~t~Gf  134 (340)
                      ...+.+.++  .+...++..+.+.
T Consensus        98 ~~~~~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           98 NFFISMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             HHHHHHHHHHTSCCSEEEEECSSG
T ss_pred             HHHHHHHHHHHCCCCeEEEEECCH
Confidence            666666655  4666666555543

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=95.78  E-value=0.0099  Score=55.53  Aligned_cols=90  Identities=10%  Similarity=0.038  Sum_probs=58.7

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce-e------------cCccc-------ccCHHHhhccCCC
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-H------------LGLPV-------FNTVAEAKAETKA  100 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~-i------------~G~p~-------y~sl~dip~~~~v  100 (340)
                      +..+|+|.|++|.+|+.+++.|.+.|++++..........+ .            .++..       ..++.++.+  ++
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~  101 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMK--GV  101 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTT--TC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhc--CC
Confidence            35578899999999999999999999997754432210010 0            22222       223555554  69


Q ss_pred             cEEEEecCh------------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          101 NASAIYVPP------------------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       101 Dlavi~vp~------------------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      |++|-+...                  .....+++.|.+.|++.+|.+++
T Consensus       102 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS  151 (351)
T 3ruf_A          102 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAAS  151 (351)
T ss_dssp             SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence            999987642                  11334788888899988776664

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.77  E-value=0.04  Score=44.04  Aligned_cols=91  Identities=15%  Similarity=0.114  Sum_probs=55.7

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee---cCcccc-c---CHHHhhc--cCCCcEEEEecChhh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---LGLPVF-N---TVAEAKA--ETKANASAIYVPPPF  111 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i---~G~p~y-~---sl~dip~--~~~vDlavi~vp~~~  111 (340)
                      ..+|+|+|+ |.+|..+++.|.+.|++++ .++++... +.+   .|++.+ .   +.+.+.+  -.+.|++++++|.+.
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~-~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~   81 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIV-LIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE   81 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCch
Confidence            356888899 9999999999999998855 55554310 111   244332 2   2222221  125899999999876


Q ss_pred             HHHHH-HHHHHcCCcEEEEecCCC
Q 019500          112 AAAAI-LEAMEAELDLVVCITEGI  134 (340)
Q Consensus       112 v~~~v-~ea~~~Gvk~vvi~t~Gf  134 (340)
                      ....+ ..+.+.+.+.++..+.+.
T Consensus        82 ~~~~~~~~~~~~~~~~ii~~~~~~  105 (140)
T 1lss_A           82 VNLMSSLLAKSYGINKTIARISEI  105 (140)
T ss_dssp             HHHHHHHHHHHTTCCCEEEECSST
T ss_pred             HHHHHHHHHHHcCCCEEEEEecCH
Confidence            55444 444455766666666554

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=95.75  E-value=0.055  Score=53.73  Aligned_cols=102  Identities=22%  Similarity=0.187  Sum_probs=66.6

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEE-EeeCCCCCCcee----------------------cCcccccCHHHhhcc
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGTEH----------------------LGLPVFNTVAEAKAE   97 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv-~~VnP~~~g~~i----------------------~G~p~y~sl~dip~~   97 (340)
                      -++++.|+|. |.+|...+.+|.+.|++++ +.+||... +.+                      ..+.+..++++..+ 
T Consensus         7 ~~~~~~vIGl-G~vG~~~A~~La~~G~~V~~~D~~~~kv-~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~-   83 (446)
T 4a7p_A            7 GSVRIAMIGT-GYVGLVSGACFSDFGHEVVCVDKDARKI-ELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVK-   83 (446)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTH-HHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHT-
T ss_pred             CceEEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHh-
Confidence            4778888899 9999999999999999955 33444421 111                      11344457766665 


Q ss_pred             CCCcEEEEecChh-----------hHHHHHHHHHHcC-CcEEEEecCCCChhhHHHHHHHH
Q 019500           98 TKANASAIYVPPP-----------FAAAAILEAMEAE-LDLVVCITEGIPQHDMVRVKAAL  146 (340)
Q Consensus        98 ~~vDlavi~vp~~-----------~v~~~v~ea~~~G-vk~vvi~t~Gf~e~~~~~l~~~a  146 (340)
                       +.|++++++|..           .+.++++...+.- -..+||..++++....+++.+.+
T Consensus        84 -~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l  143 (446)
T 4a7p_A           84 -DADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERII  143 (446)
T ss_dssp             -TCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHH
T ss_pred             -cCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHH
Confidence             589999997654           4777776665532 23456667787765555555444

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=95.72  E-value=0.025  Score=54.40  Aligned_cols=63  Identities=16%  Similarity=0.151  Sum_probs=48.4

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce-ecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-HLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~-i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      ..|.|+|. |++|+.+++.+..+|++++ ..||.....+ ..|...+.+++++..  ..|++++++|.
T Consensus       174 ktvGIIGl-G~IG~~vA~~l~~~G~~V~-~~dr~~~~~~~~~g~~~~~~l~ell~--~sDvV~l~~Pl  237 (345)
T 4g2n_A          174 RRLGIFGM-GRIGRAIATRARGFGLAIH-YHNRTRLSHALEEGAIYHDTLDSLLG--ASDIFLIAAPG  237 (345)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHTTTCEEE-EECSSCCCHHHHTTCEECSSHHHHHH--TCSEEEECSCC
T ss_pred             CEEEEEEe-ChhHHHHHHHHHHCCCEEE-EECCCCcchhhhcCCeEeCCHHHHHh--hCCEEEEecCC
Confidence            35667799 9999999999999999876 6777642111 226655579999987  58999999994

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=95.72  E-value=0.027  Score=54.85  Aligned_cols=98  Identities=13%  Similarity=0.043  Sum_probs=60.6

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee--cCc------------------ccccCHHHhhccCCCcE
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGL------------------PVFNTVAEAKAETKANA  102 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i--~G~------------------p~y~sl~dip~~~~vDl  102 (340)
                      +|.|+|+ |.+|...+..|.+ |++++ .++.+... +.+  .+.                  ....++.+..+  +.|+
T Consensus         2 kI~VIG~-G~vG~~~A~~La~-G~~V~-~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~--~aDv   76 (402)
T 1dlj_A            2 KIAVAGS-GYVGLSLGVLLSL-QNEVT-IVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYK--EAEL   76 (402)
T ss_dssp             EEEEECC-SHHHHHHHHHHTT-TSEEE-EECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHH--HCSE
T ss_pred             EEEEECC-CHHHHHHHHHHhC-CCEEE-EEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhc--CCCE
Confidence            5677799 9999999999988 98855 56654200 111  122                  33345655444  3899


Q ss_pred             EEEecChh-----------hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHH
Q 019500          103 SAIYVPPP-----------FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAAL  146 (340)
Q Consensus       103 avi~vp~~-----------~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~a  146 (340)
                      +++++|+.           .+.+++++..+.+-..+|+..+..+....+++.+.+
T Consensus        77 viiavpt~~~~~~~~~dl~~v~~v~~~i~~l~~~~iVV~~ST~~~g~~~~l~~~~  131 (402)
T 1dlj_A           77 VIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKF  131 (402)
T ss_dssp             EEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHT
T ss_pred             EEEecCCCcccCCCCccHHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHHHHh
Confidence            99999987           477777776654444556553333333344455443

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=95.72  E-value=0.042  Score=54.52  Aligned_cols=100  Identities=14%  Similarity=0.150  Sum_probs=60.6

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc--CCeEEEeeCCCCCC-ce----------------e-----cCcccccCHHHhhccC
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-TE----------------H-----LGLPVFNTVAEAKAET   98 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~--G~~vv~~VnP~~~g-~~----------------i-----~G~p~y~sl~dip~~~   98 (340)
                      .+|.|+|+ |.+|..++..|.+.  |++++ .+|.+... +.                +     .++....++++...  
T Consensus         6 mkI~VIG~-G~mG~~lA~~La~~g~G~~V~-~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~--   81 (467)
T 2q3e_A            6 KKICCIGA-GYVGGPTCSVIAHMCPEIRVT-VVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIK--   81 (467)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHHCTTSEEE-EECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHH--
T ss_pred             cEEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHh--
Confidence            46778898 99999999999988  78855 56554200 01                0     13445567766554  


Q ss_pred             CCcEEEEecChhh---------------HHHHHHHHHHc-CCcEEEEecCCCChhhHHHHHHHH
Q 019500           99 KANASAIYVPPPF---------------AAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKAAL  146 (340)
Q Consensus        99 ~vDlavi~vp~~~---------------v~~~v~ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~a  146 (340)
                      +.|++++++|...               +.+++++..+. .-..+|+..+..+....+++.+.+
T Consensus        82 ~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l  145 (467)
T 2q3e_A           82 EADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIF  145 (467)
T ss_dssp             HCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHH
T ss_pred             cCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHH
Confidence            4899999987543               34555555543 333455555554433344454444

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=95.71  E-value=0.043  Score=50.38  Aligned_cols=86  Identities=10%  Similarity=0.078  Sum_probs=59.7

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee-------cCcccccCHHHhhccCCCcEEEEecCh------
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-------LGLPVFNTVAEAKAETKANASAIYVPP------  109 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i-------~G~p~y~sl~dip~~~~vDlavi~vp~------  109 (340)
                      .+|+|.|++|..|+.+++.|.+.|++++........ .++       ..+. ..++.++.+  ++|++|-+...      
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~Dl~-~~~~~~~~~--~~d~Vih~a~~~~~~~~   78 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGN-KAINDYEYRVSDYT-LEDLINQLN--DVDAVVHLAATRGSQGK   78 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------CCEEEECCCC-HHHHHHHTT--TCSEEEECCCCCCSSSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCc-ccCCceEEEEcccc-HHHHHHhhc--CCCEEEEccccCCCCCh
Confidence            368889999999999999999999987754433110 111       2333 455666665  69999987543      


Q ss_pred             --------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          110 --------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       110 --------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                              .....+++.|.+.|++.+|.+++
T Consensus        79 ~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS  109 (311)
T 3m2p_A           79 ISEFHDNEILTQNLYDACYENNISNIVYAST  109 (311)
T ss_dssp             GGGTHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence                    23467788888899998776665

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.68  E-value=0.035  Score=55.45  Aligned_cols=106  Identities=10%  Similarity=0.125  Sum_probs=68.4

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCC-cee---cCccc-------ccCHHHhhccCCCcEEEEecCh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-TEH---LGLPV-------FNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g-~~i---~G~p~-------y~sl~dip~~~~vDlavi~vp~  109 (340)
                      ..+|+|+|+ |.+|+.+++.|.+. ++++ ..+|++... +++   .++..       +.++.++..  ++|++|.++|.
T Consensus        23 ~k~VlIiGA-GgiG~aia~~L~~~~g~~V-~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~--~~DvVIn~tp~   98 (467)
T 2axq_A           23 GKNVLLLGS-GFVAQPVIDTLAANDDINV-TVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLA--DNDVVISLIPY   98 (467)
T ss_dssp             CEEEEEECC-STTHHHHHHHHHTSTTEEE-EEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHH--TSSEEEECSCG
T ss_pred             CCEEEEECC-hHHHHHHHHHHHhCCCCeE-EEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHc--CCCEEEECCch
Confidence            346788898 99999999999987 6764 366654310 111   13221       124445444  59999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEE
Q 019500          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (340)
Q Consensus       110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi  155 (340)
                      ....++.+.|++.|++.+-  ..-+.+ +..++.+.+ ++.|+.++
T Consensus        99 ~~~~~v~~a~l~~g~~vvd--~~~~~p-~~~~Ll~~A-k~aGv~~i  140 (467)
T 2axq_A           99 TFHPNVVKSAIRTKTDVVT--SSYISP-ALRELEPEI-VKAGITVM  140 (467)
T ss_dssp             GGHHHHHHHHHHHTCEEEE--CSCCCH-HHHHHHHHH-HHHTCEEE
T ss_pred             hhhHHHHHHHHhcCCEEEE--eecCCH-HHHHHHHHH-HHcCCEEE
Confidence            8878889999999987632  222332 234454544 56777765

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=95.67  E-value=0.03  Score=53.37  Aligned_cols=103  Identities=14%  Similarity=0.094  Sum_probs=62.1

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhh-HHHHH-HHHH-
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAI-LEAM-  120 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~-v~~~v-~ea~-  120 (340)
                      +|.|+|. |++|+.+++.+..+|++++ ..||... ......-.|.+++++..  ..|++++++|... ...++ ++.. 
T Consensus       147 ~vgIiG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~-~~~~~~~~~~~l~ell~--~aDvV~~~~P~~~~t~~li~~~~l~  221 (333)
T 1dxy_A          147 TVGVMGT-GHIGQVAIKLFKGFGAKVI-AYDPYPM-KGDHPDFDYVSLEDLFK--QSDVIDLHVPGIEQNTHIINEAAFN  221 (333)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCC-SSCCTTCEECCHHHHHH--HCSEEEECCCCCGGGTTSBCHHHHH
T ss_pred             EEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCcc-hhhHhccccCCHHHHHh--cCCEEEEcCCCchhHHHHhCHHHHh
Confidence            4667799 9999999999999999966 6776542 11211123568999876  4899999999643 22222 1122 


Q ss_pred             HcCCcEE-EEecCCCChhhHHHHHHHHhccCCcE
Q 019500          121 EAELDLV-VCITEGIPQHDMVRVKAALNNQSKTR  153 (340)
Q Consensus       121 ~~Gvk~v-vi~t~Gf~e~~~~~l~~~aar~~gir  153 (340)
                      ...-..+ |..+.|- -.+.+.|.+++ ++.++.
T Consensus       222 ~mk~ga~lIn~srg~-~vd~~aL~~aL-~~g~i~  253 (333)
T 1dxy_A          222 LMKPGAIVINTARPN-LIDTQAMLSNL-KSGKLA  253 (333)
T ss_dssp             HSCTTEEEEECSCTT-SBCHHHHHHHH-HTTSEE
T ss_pred             hCCCCcEEEECCCCc-ccCHHHHHHHH-HhCCcc
Confidence            2233333 4444442 23445565655 455544

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=95.67  E-value=0.0096  Score=57.26  Aligned_cols=106  Identities=16%  Similarity=0.160  Sum_probs=66.4

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc--eecCcccccCHHHhhccCCCcEEEEecChh-hHHHHH-H
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAI-L  117 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~--~i~G~p~y~sl~dip~~~~vDlavi~vp~~-~v~~~v-~  117 (340)
                      ..+|.|+|. |++|+.+++.+..+|++++ ..||.....  .-.|...+.+++++..  ..|++++++|.. ....++ +
T Consensus       168 g~tvGIIG~-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~  243 (347)
T 1mx3_A          168 GETLGIIGL-GRVGQAVALRAKAFGFNVL-FYDPYLSDGVERALGLQRVSTLQDLLF--HSDCVTLHCGLNEHNHHLIND  243 (347)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECTTSCTTHHHHHTCEECSSHHHHHH--HCSEEEECCCCCTTCTTSBSH
T ss_pred             CCEEEEEeE-CHHHHHHHHHHHHCCCEEE-EECCCcchhhHhhcCCeecCCHHHHHh--cCCEEEEcCCCCHHHHHHhHH
Confidence            445777799 9999999999999999866 577754211  1246655668999886  489999999974 333334 2


Q ss_pred             HHHHc-CCcE-EEEecCCCChhhHHHHHHHHhccCCcE
Q 019500          118 EAMEA-ELDL-VVCITEGIPQHDMVRVKAALNNQSKTR  153 (340)
Q Consensus       118 ea~~~-Gvk~-vvi~t~Gf~e~~~~~l~~~aar~~gir  153 (340)
                      +.++. .-.. +|..+.|-. .+.++|.+++ ++.++.
T Consensus       244 ~~l~~mk~gailIN~arg~~-vd~~aL~~aL-~~g~i~  279 (347)
T 1mx3_A          244 FTVKQMRQGAFLVNTARGGL-VDEKALAQAL-KEGRIR  279 (347)
T ss_dssp             HHHTTSCTTEEEEECSCTTS-BCHHHHHHHH-HHTSEE
T ss_pred             HHHhcCCCCCEEEECCCChH-HhHHHHHHHH-HhCCCc
Confidence            33322 2233 344444432 3344555555 455555

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=95.57  E-value=0.035  Score=55.64  Aligned_cols=80  Identities=11%  Similarity=0.036  Sum_probs=57.1

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc-CC---eEEEeeCCCCCCcee---cCcccc-----c-C----HHHhhccCCCcEEEE
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY-GT---KMVGGVTPKKGGTEH---LGLPVF-----N-T----VAEAKAETKANASAI  105 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~-G~---~vv~~VnP~~~g~~i---~G~p~y-----~-s----l~dip~~~~vDlavi  105 (340)
                      .+|+|+|+ |.+|+.+++.+.+. ++   +++ .++|...+.++   .|++.-     + +    ++++..+  .|++|-
T Consensus        14 ~rVlIIGa-GgVG~~va~lla~~~dv~~~~I~-vaD~~~~~~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~--~DvVIN   89 (480)
T 2ph5_A           14 NRFVILGF-GCVGQALMPLIFEKFDIKPSQVT-IIAAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGSTLEE--NDFLID   89 (480)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHHBCCCGGGEE-EEESSCCSCCHHHHHTCEEEECCCCTTTHHHHTGGGCCT--TCEEEE
T ss_pred             CCEEEECc-CHHHHHHHHHHHhCCCCceeEEE-EeccchhhhhHHhhcCCceeEEeccchhHHHHHHHHhcC--CCEEEE
Confidence            46888898 99999999888774 55   344 66775433321   243322     2 2    3334442  499999


Q ss_pred             ecChhhHHHHHHHHHHcCCcE
Q 019500          106 YVPPPFAAAAILEAMEAELDL  126 (340)
Q Consensus       106 ~vp~~~v~~~v~ea~~~Gvk~  126 (340)
                      ..++....++++.|+++|+..
T Consensus        90 ~s~~~~~l~Im~acleaGv~Y  110 (480)
T 2ph5_A           90 VSIGISSLALIILCNQKGALY  110 (480)
T ss_dssp             CCSSSCHHHHHHHHHHHTCEE
T ss_pred             CCccccCHHHHHHHHHcCCCE
Confidence            999999999999999999997

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=95.50  E-value=0.021  Score=55.88  Aligned_cols=93  Identities=14%  Similarity=0.066  Sum_probs=61.6

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcC--------Ce-EEEeeCC------------------CCC-Cce-ecCcccccC
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYG--------TK-MVGGVTP------------------KKG-GTE-HLGLPVFNT   90 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G--------~~-vv~~VnP------------------~~~-g~~-i~G~p~y~s   90 (340)
                      +++.||.|+|+ |.+|+.++..|.+.|        .+ .+|.-++                  ++- |-. -..+.+..+
T Consensus        32 ~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~d  110 (391)
T 4fgw_A           32 EKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPD  110 (391)
T ss_dssp             -CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESC
T ss_pred             CCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCC
Confidence            45667888899 999999988777643        12 2333222                  210 000 124556678


Q ss_pred             HHHhhccCCCcEEEEecChhhHHHHHHHHHHcC--CcEEEEecCCCC
Q 019500           91 VAEAKAETKANASAIYVPPPFAAAAILEAMEAE--LDLVVCITEGIP  135 (340)
Q Consensus        91 l~dip~~~~vDlavi~vp~~~v~~~v~ea~~~G--vk~vvi~t~Gf~  135 (340)
                      +.+..+  +.|++++++|...+.+++++....-  -..+|+.+-|+.
T Consensus       111 l~~al~--~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGie  155 (391)
T 4fgw_A          111 LIDSVK--DVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGFE  155 (391)
T ss_dssp             HHHHHT--TCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSCE
T ss_pred             HHHHHh--cCCEEEEECChhhhHHHHHHhccccCCCceeEEeccccc
Confidence            888776  5899999999999999999886432  223566777984

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=95.48  E-value=0.024  Score=54.42  Aligned_cols=90  Identities=13%  Similarity=0.006  Sum_probs=62.5

Q ss_pred             eEEEEeCCCCCcchHHHHHHHH---c-CCeEEEeeCC-----------------CCCC------ce--ecC--cccc--c
Q 019500           43 TRVICQGITGKNGTFHTEQAIE---Y-GTKMVGGVTP-----------------KKGG------TE--HLG--LPVF--N   89 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~---~-G~~vv~~VnP-----------------~~~g------~~--i~G--~p~y--~   89 (340)
                      ++|.|+|+ |+.|+.+.+.|.+   . .+++++.-++                 +..+      +.  +.|  ++++  .
T Consensus         3 ikVgI~G~-G~iGr~l~r~l~~~~~~~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~   81 (339)
T 2x5j_O            3 VRVAINGF-GRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHER   81 (339)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTSGGGTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred             eEEEEECc-CHHHHHHHHHHHcCCCCCCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEEecC
Confidence            68899999 9999999999887   5 6777743332                 1100      00  123  2344  2


Q ss_pred             CHHHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCC
Q 019500           90 TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEG  133 (340)
Q Consensus        90 sl~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~G  133 (340)
                      +.++++- +.++|+++.|+|.....+.+...++.|+|.+||=.++
T Consensus        82 dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~a  126 (339)
T 2x5j_O           82 SLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPG  126 (339)
T ss_dssp             SGGGCCHHHHTCSEEEECSSSCCSHHHHHHHHHTTCSEEEESSCC
T ss_pred             ChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCCEEEEeccc
Confidence            4556541 1159999999999999999999999999986654444

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=95.46  E-value=0.0083  Score=59.64  Aligned_cols=119  Identities=13%  Similarity=0.222  Sum_probs=82.7

Q ss_pred             ccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC---CC-----ceecCcccccCHHHhhccCCCcEEEEe
Q 019500           35 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK---GG-----TEHLGLPVFNTVAEAKAETKANASAIY  106 (340)
Q Consensus        35 ~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~---~g-----~~i~G~p~y~sl~dip~~~~vDlavi~  106 (340)
                      -++|+.+.|+|+  |. |..|+.++.||++.|.+++.++-|..   ..     .+-.|..+++ ++|...  .-|++++.
T Consensus        32 ~~~lkgK~IaVI--Gy-GsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~~-~~eA~~--~ADvV~~L  105 (491)
T 3ulk_A           32 ASYLQGKKVVIV--GC-GAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGT-YEELIP--QADLVINL  105 (491)
T ss_dssp             TGGGTTSEEEEE--SC-SHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEEE-HHHHGG--GCSEEEEC
T ss_pred             hHHHcCCEEEEe--CC-ChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEecC-HHHHHH--hCCEEEEe
Confidence            367888877666  98 88999999999999999776765431   00     1347888874 777765  48999999


Q ss_pred             cChhhHHHHHHHHHHcCC--cEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcc
Q 019500          107 VPPPFAAAAILEAMEAEL--DLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVI  163 (340)
Q Consensus       107 vp~~~v~~~v~ea~~~Gv--k~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~  163 (340)
                      +|.+...++.++ ++...  ...+.|+.||+-... .+ + ..+.-++-++-|.++|-.
T Consensus       106 ~PD~~q~~vy~~-I~p~lk~G~~L~faHGFnI~~~-~i-~-pp~dvdVimVAPKgpG~~  160 (491)
T 3ulk_A          106 TPDKQHSDVVRT-VQPLMKDGAALGYSHGFNIVEV-GE-Q-IRKDITVVMVAPKCPGTE  160 (491)
T ss_dssp             SCGGGHHHHHHH-HGGGSCTTCEEEESSCHHHHTT-CC-C-CCTTSEEEEEEESSCHHH
T ss_pred             CChhhHHHHHHH-HHhhCCCCCEEEecCccccccc-cc-c-cCCCcceEEeCCCCCcHH
Confidence            999999988876 66553  356789999952210 00 0 012334667788888744

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=95.46  E-value=0.028  Score=54.08  Aligned_cols=64  Identities=16%  Similarity=0.238  Sum_probs=49.0

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce---ecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~---i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      ..+|.|+|. |++|+.+++.+..+|++++ ..|++....+   -.|+..+.+++++..  ..|++++++|.
T Consensus       164 gktvGIIG~-G~IG~~vA~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~~Pl  230 (351)
T 3jtm_A          164 GKTIGTVGA-GRIGKLLLQRLKPFGCNLL-YHDRLQMAPELEKETGAKFVEDLNEMLP--KCDVIVINMPL  230 (351)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHGGGCCEEE-EECSSCCCHHHHHHHCCEECSCHHHHGG--GCSEEEECSCC
T ss_pred             CCEEeEEEe-CHHHHHHHHHHHHCCCEEE-EeCCCccCHHHHHhCCCeEcCCHHHHHh--cCCEEEECCCC
Confidence            345677799 9999999999999999965 6776531111   246666679999987  48999999995

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=95.45  E-value=0.024  Score=53.52  Aligned_cols=64  Identities=16%  Similarity=0.109  Sum_probs=47.4

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc--eecCcccccCHHHhhccCCCcEEEEecChh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~--~i~G~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      ..+|.|+|. |++|+.+++.+..+|++++ .+||.....  .-.|.. +.+++++..  ..|++++++|..
T Consensus       142 g~~vgIIG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~g~~-~~~l~ell~--~aDvVvl~~P~~  207 (313)
T 2ekl_A          142 GKTIGIVGF-GRIGTKVGIIANAMGMKVL-AYDILDIREKAEKINAK-AVSLEELLK--NSDVISLHVTVS  207 (313)
T ss_dssp             TCEEEEESC-SHHHHHHHHHHHHTTCEEE-EECSSCCHHHHHHTTCE-ECCHHHHHH--HCSEEEECCCCC
T ss_pred             CCEEEEEee-CHHHHHHHHHHHHCCCEEE-EECCCcchhHHHhcCce-ecCHHHHHh--hCCEEEEeccCC
Confidence            335677799 9999999999999999866 677765211  123554 348888876  489999999954

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=95.44  E-value=0.048  Score=52.40  Aligned_cols=89  Identities=9%  Similarity=0.020  Sum_probs=62.3

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCC---eEEEeeCCCCCCceec--Ccc-cccCHHH-hhccCCCcEEEEecChhhHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGGTEHL--GLP-VFNTVAE-AKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~---~vv~~VnP~~~g~~i~--G~p-~y~sl~d-ip~~~~vDlavi~vp~~~v~~~  115 (340)
                      ++|.|+|+||-.|..+++.|.++.|   ++.....++..|+.+.  |.. .+.++++ ..  .++|+++.|+|.....+.
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~~~~~~~~~~~~~~~~~--~~~Dvvf~a~~~~~s~~~   79 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETADP--SGLDIALFSAGSAMSKVQ   79 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEEETTEEEEEEETTTSCC--TTCSEEEECSCHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCceeecCCceEEEeCCHHHh--ccCCEEEECCChHHHHHH
Confidence            5788889999999999998888744   3554455666565542  210 1111111 11  258999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCCC
Q 019500          116 ILEAMEAELDLVVCITEGI  134 (340)
Q Consensus       116 v~ea~~~Gvk~vvi~t~Gf  134 (340)
                      +..+.++|++. |-.++-|
T Consensus        80 a~~~~~~G~~v-ID~Sa~~   97 (344)
T 3tz6_A           80 APRFAAAGVTV-IDNSSAW   97 (344)
T ss_dssp             HHHHHHTTCEE-EECSSTT
T ss_pred             HHHHHhCCCEE-EECCCcc
Confidence            99999999974 5677665

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=95.38  E-value=0.017  Score=54.72  Aligned_cols=64  Identities=9%  Similarity=0.143  Sum_probs=48.4

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCC-CCCCce---ecCcccccCHHHhhccCCCcEEEEecChh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP-KKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP-~~~g~~---i~G~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      ..+|.|+|. |++|+.+++.+..+|++++ .+|| ... .+   -.|.....+++++..  ..|++++++|..
T Consensus       146 g~~vgIIG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~~-~~~~~~~g~~~~~~l~ell~--~aDvVil~~p~~  213 (320)
T 1gdh_A          146 NKTLGIYGF-GSIGQALAKRAQGFDMDID-YFDTHRAS-SSDEASYQATFHDSLDSLLS--VSQFFSLNAPST  213 (320)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECSSCCC-HHHHHHHTCEECSSHHHHHH--HCSEEEECCCCC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCCcC-hhhhhhcCcEEcCCHHHHHh--hCCEEEEeccCc
Confidence            335677799 9999999999999999866 7787 552 11   146655558988876  489999999964

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.38  E-value=0.038  Score=51.40  Aligned_cols=90  Identities=16%  Similarity=0.058  Sum_probs=58.1

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC-C-cee-cCcccccCHHHhhccCCCcEEEEecCh--------
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-G-TEH-LGLPVFNTVAEAKAETKANASAIYVPP--------  109 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~-g-~~i-~G~p~y~sl~dip~~~~vDlavi~vp~--------  109 (340)
                      +..+|+|.|++|.+|+.+++.|.+.|++++........ + ..+ ..+.-..++.++.+  ++|+++-+...        
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vih~A~~~~~~~~~~   95 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIM--GVSAVLHLGAFMSWAPADR   95 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHT--TCSEEEECCCCCCSSGGGH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHh--CCCEEEECCcccCcchhhH
Confidence            34467888999999999999999999997744332210 0 111 22222334556655  69999876532        


Q ss_pred             --------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          110 --------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       110 --------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                              .....+++.|.+.|++.+|.+++
T Consensus        96 ~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS  126 (347)
T 4id9_A           96 DRMFAVNVEGTRRLLDAASAAGVRRFVFASS  126 (347)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence                    12356788888899988777776

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=95.29  E-value=0.0018  Score=59.77  Aligned_cols=88  Identities=10%  Similarity=0.001  Sum_probs=52.2

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~---i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea  119 (340)
                      +|.|+|+ |+||..+.+.|.+. ++++...|++... +.   ..|. .+.+++++.+  +.|++++++|+..+.++++++
T Consensus         4 ~I~iIG~-G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~--~~DvVilav~~~~~~~v~~~l   78 (276)
T 2i76_A            4 VLNFVGT-GTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPE--LNGVVFVIVPDRYIKTVANHL   78 (276)
T ss_dssp             CCEEESC-CHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC-----CEEECSCTTTHHHHHTTT
T ss_pred             eEEEEeC-CHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHh--cCCEEEEeCChHHHHHHHHHh
Confidence            5667798 99999999988776 7653355654310 11   2355 6677777654  489999999999988888766


Q ss_pred             HHcCCcEEEEecCCCChh
Q 019500          120 MEAELDLVVCITEGIPQH  137 (340)
Q Consensus       120 ~~~Gvk~vvi~t~Gf~e~  137 (340)
                      . ..-+.++..+++.+.+
T Consensus        79 ~-~~~~ivi~~s~~~~~~   95 (276)
T 2i76_A           79 N-LGDAVLVHCSGFLSSE   95 (276)
T ss_dssp             C-CSSCCEEECCSSSCGG
T ss_pred             c-cCCCEEEECCCCCcHH
Confidence            4 2112334444455543

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=95.28  E-value=0.024  Score=55.41  Aligned_cols=64  Identities=11%  Similarity=0.080  Sum_probs=49.2

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce---ecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~---i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      ..+|.|+|. |++|+.+++.+..+|++++ ..|+.....+   -.|+..+.+++++..  ..|++++++|.
T Consensus       191 gktvGIIGl-G~IG~~vA~~l~a~G~~V~-~~d~~~~~~~~~~~~G~~~~~~l~ell~--~aDvV~l~~Pl  257 (393)
T 2nac_A          191 AMHVGTVAA-GRIGLAVLRRLAPFDVHLH-YTDRHRLPESVEKELNLTWHATREDMYP--VCDVVTLNCPL  257 (393)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHGGGTCEEE-EECSSCCCHHHHHHHTCEECSSHHHHGG--GCSEEEECSCC
T ss_pred             CCEEEEEeE-CHHHHHHHHHHHhCCCEEE-EEcCCccchhhHhhcCceecCCHHHHHh--cCCEEEEecCC
Confidence            335677799 9999999999999999866 6776542122   246666678999887  48999999995

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=95.28  E-value=0.073  Score=52.43  Aligned_cols=105  Identities=11%  Similarity=0.088  Sum_probs=64.5

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhh-HHHHH--HH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAI--LE  118 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~-v~~~v--~e  118 (340)
                      ..+|.|+|. |++|+.+++.+..+|++++ ..||... ....+...+.+++++..  ..|++++++|... ....+  +.
T Consensus       156 gktvGIIGl-G~IG~~vA~~l~~~G~~V~-~yd~~~~-~~~~~~~~~~sl~ell~--~aDvV~lhvPlt~~T~~li~~~~  230 (416)
T 3k5p_A          156 GKTLGIVGY-GNIGSQVGNLAESLGMTVR-YYDTSDK-LQYGNVKPAASLDELLK--TSDVVSLHVPSSKSTSKLITEAK  230 (416)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECTTCC-CCBTTBEECSSHHHHHH--HCSEEEECCCC-----CCBCHHH
T ss_pred             CCEEEEEee-CHHHHHHHHHHHHCCCEEE-EECCcch-hcccCcEecCCHHHHHh--hCCEEEEeCCCCHHHhhhcCHHH
Confidence            345677799 9999999999999999866 6776541 22334555679999987  4899999999743 33333  22


Q ss_pred             HHHcCCcEE-EEecCCCChhhHHHHHHHHhccCCcE
Q 019500          119 AMEAELDLV-VCITEGIPQHDMVRVKAALNNQSKTR  153 (340)
Q Consensus       119 a~~~Gvk~v-vi~t~Gf~e~~~~~l~~~aar~~gir  153 (340)
                      .....-..+ |..+.|-. .+.++|.+++ ++..+.
T Consensus       231 l~~mk~gailIN~aRG~v-vd~~aL~~aL-~~g~i~  264 (416)
T 3k5p_A          231 LRKMKKGAFLINNARGSD-VDLEALAKVL-QEGHLA  264 (416)
T ss_dssp             HHHSCTTEEEEECSCTTS-BCHHHHHHHH-HTTSEE
T ss_pred             HhhCCCCcEEEECCCChh-hhHHHHHHHH-HcCCcc
Confidence            223343443 44444532 3344555555 444444

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=95.26  E-value=0.018  Score=53.20  Aligned_cols=90  Identities=12%  Similarity=0.071  Sum_probs=58.2

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-----C-CeEEEeeCCCCCCcee---cCcccc--------------cCHHHhhccC
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-----G-TKMVGGVTPKKGGTEH---LGLPVF--------------NTVAEAKAET   98 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-----G-~~vv~~VnP~~~g~~i---~G~p~y--------------~sl~dip~~~   98 (340)
                      ..+|.|+|+ |.+|......|.+.     | +++. .+++...-+.+   .|+.+.              .+.+++ +  
T Consensus         8 ~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~~V~-~~~r~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~--   82 (317)
T 2qyt_A            8 PIKIAVFGL-GGVGGYYGAMLALRAAATDGLLEVS-WIARGAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEV-G--   82 (317)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHHHTTSSEEEE-EECCHHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHH-C--
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCccccCCCCCEE-EEEcHHHHHHHHhcCCeEEEeCCCCeEEecceEecCcccc-C--
Confidence            357888898 99999999999888     8 7755 56652100111   344332              233333 2  


Q ss_pred             CCcEEEEecChhhHHHHHHHHHHc-CC-cEEEEecCCCCh
Q 019500           99 KANASAIYVPPPFAAAAILEAMEA-EL-DLVVCITEGIPQ  136 (340)
Q Consensus        99 ~vDlavi~vp~~~v~~~v~ea~~~-Gv-k~vvi~t~Gf~e  136 (340)
                      +.|++++++|+..+.+++++.... +- ..++.++.|+..
T Consensus        83 ~~D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~  122 (317)
T 2qyt_A           83 TVDYILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADI  122 (317)
T ss_dssp             CEEEEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSH
T ss_pred             CCCEEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCc
Confidence            589999999999998888766442 11 234555778753

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=95.26  E-value=0.028  Score=53.98  Aligned_cols=62  Identities=16%  Similarity=0.181  Sum_probs=47.4

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      .+|.|+|. |++|+.+++.+..+|++++ ..||... ....+.-.|.+++++..  ..|++++++|-
T Consensus       149 ktvgIiGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~-~~~~~~~~~~~l~ell~--~aDvV~l~~Pl  210 (343)
T 2yq5_A          149 LTVGLIGV-GHIGSAVAEIFSAMGAKVI-AYDVAYN-PEFEPFLTYTDFDTVLK--EADIVSLHTPL  210 (343)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCC-GGGTTTCEECCHHHHHH--HCSEEEECCCC
T ss_pred             CeEEEEec-CHHHHHHHHHHhhCCCEEE-EECCChh-hhhhccccccCHHHHHh--cCCEEEEcCCC
Confidence            35667799 9999999999999999866 6777652 22333334569999887  48999999994

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=95.25  E-value=0.026  Score=53.33  Aligned_cols=96  Identities=16%  Similarity=0.171  Sum_probs=60.3

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhh-HHHHHH-HH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAIL-EA  119 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~-v~~~v~-ea  119 (340)
                      ..+|.|+|. |++|+.+++.+..+|++++ ..||...  ... + .+.+++++..  ..|++++++|... ...++. +.
T Consensus       144 g~~vgIIG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~--~~~-~-~~~~l~ell~--~aDvV~l~~p~~~~t~~li~~~~  215 (311)
T 2cuk_A          144 GLTLGLVGM-GRIGQAVAKRALAFGMRVV-YHARTPK--PLP-Y-PFLSLEELLK--EADVVSLHTPLTPETHRLLNRER  215 (311)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCC--SSS-S-CBCCHHHHHH--HCSEEEECCCCCTTTTTCBCHHH
T ss_pred             CCEEEEEEE-CHHHHHHHHHHHHCCCEEE-EECCCCc--ccc-c-ccCCHHHHHh--hCCEEEEeCCCChHHHhhcCHHH
Confidence            335677799 9999999999999999865 6777652  222 3 3678988876  4899999999863 333332 22


Q ss_pred             HH-cCCcE-EEEecCCCChhhHHHHHHHH
Q 019500          120 ME-AELDL-VVCITEGIPQHDMVRVKAAL  146 (340)
Q Consensus       120 ~~-~Gvk~-vvi~t~Gf~e~~~~~l~~~a  146 (340)
                      .+ ..-.. ++..+.|- -.+.+++.+++
T Consensus       216 l~~mk~ga~lin~srg~-~vd~~aL~~aL  243 (311)
T 2cuk_A          216 LFAMKRGAILLNTARGA-LVDTEALVEAL  243 (311)
T ss_dssp             HTTSCTTCEEEECSCGG-GBCHHHHHHHH
T ss_pred             HhhCCCCcEEEECCCCC-ccCHHHHHHHH
Confidence            22 12222 34444442 22344555555

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=95.23  E-value=0.028  Score=53.48  Aligned_cols=62  Identities=16%  Similarity=0.117  Sum_probs=45.8

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChh
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      +|.|+|. |++|+.+++.+..+|++++ .+||... ......-.|.+++++..  ..|++++++|..
T Consensus       148 ~vgIiG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~-~~~~~~~~~~~l~ell~--~aDvV~~~~p~t  209 (331)
T 1xdw_A          148 TVGVVGL-GRIGRVAAQIFHGMGATVI-GEDVFEI-KGIEDYCTQVSLDEVLE--KSDIITIHAPYI  209 (331)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCC-CSCTTTCEECCHHHHHH--HCSEEEECCCCC
T ss_pred             EEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCcc-HHHHhccccCCHHHHHh--hCCEEEEecCCc
Confidence            4667799 9999999999999999966 6776542 11211123568988876  489999999863

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.20  E-value=0.049  Score=48.16  Aligned_cols=88  Identities=11%  Similarity=0.073  Sum_probs=57.1

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcC-CeEEEee-CCCCCCcee--cCcccc-------cCHHHhhccCCCcEEEEecChh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYG-TKMVGGV-TPKKGGTEH--LGLPVF-------NTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G-~~vv~~V-nP~~~g~~i--~G~p~y-------~sl~dip~~~~vDlavi~vp~~  110 (340)
                      +.+|+|.|++|.+|+.+++.|.+.| ++++... ++... .+.  .++.++       .++.++.+  .+|++|.+....
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~D~vv~~a~~~   99 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKI-HKPYPTNSQIIMGDVLNHAALKQAMQ--GQDIVYANLTGE   99 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGS-CSSCCTTEEEEECCTTCHHHHHHHHT--TCSEEEEECCST
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhh-cccccCCcEEEEecCCCHHHHHHHhc--CCCEEEEcCCCC
Confidence            3468899999999999999999999 7766332 22211 111  122222       23445554  589998776553


Q ss_pred             ----hHHHHHHHHHHcCCcEEEEecC
Q 019500          111 ----FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       111 ----~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                          .+..+++.+.+.|++.+|.+++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~iV~iSS  125 (236)
T 3qvo_A          100 DLDIQANSVIAAMKACDVKRLIFVLS  125 (236)
T ss_dssp             THHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             chhHHHHHHHHHHHHcCCCEEEEEec
Confidence                2345677777889988887776

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=94.19  E-value=0.0033  Score=55.57  Aligned_cols=87  Identities=14%  Similarity=0.098  Sum_probs=56.6

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce--ecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM  120 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~--i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~  120 (340)
                      .+|.|+|+ |+||+.+++.|.+.|+++. .++++...+.  -.|+... ++.++.+  ..|++++++|+..+.+++ +..
T Consensus        20 ~~I~iIG~-G~mG~~la~~L~~~G~~V~-~~~r~~~~~~~~~~g~~~~-~~~~~~~--~aDvVilav~~~~~~~v~-~l~   93 (201)
T 2yjz_A           20 GVVCIFGT-GDFGKSLGLKMLQCGYSVV-FGSRNPQVSSLLPRGAEVL-CYSEAAS--RSDVIVLAVHREHYDFLA-ELA   93 (201)
Confidence            35667798 9999999999999898754 5565431111  1355544 6666654  589999999998776665 322


Q ss_pred             HcC-CcEEEEecCCCC
Q 019500          121 EAE-LDLVVCITEGIP  135 (340)
Q Consensus       121 ~~G-vk~vvi~t~Gf~  135 (340)
                      ... -+.+|.++.|++
T Consensus        94 ~~~~~~ivI~~~~G~~  109 (201)
T 2yjz_A           94 DSLKGRVLIDVSNNQK  109 (201)
Confidence            111 124555667875

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=95.19  E-value=0.11  Score=51.91  Aligned_cols=98  Identities=16%  Similarity=0.158  Sum_probs=60.0

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc--CCeEEEeeCCCCCCcee-----c-------------------CcccccCHHHhhc
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGGTEH-----L-------------------GLPVFNTVAEAKA   96 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~--G~~vv~~VnP~~~g~~i-----~-------------------G~p~y~sl~dip~   96 (340)
                      .+|.|+|+ |.+|...+..|.+.  |++++ .+|.+.  +.+     .                   ++....++.+...
T Consensus        10 mkI~VIG~-G~vG~~~A~~La~~g~g~~V~-~~D~~~--~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~   85 (481)
T 2o3j_A           10 SKVVCVGA-GYVGGPTCAMIAHKCPHITVT-VVDMNT--AKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIA   85 (481)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHHCTTSEEE-EECSCH--HHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEECCH--HHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhh
Confidence            46788899 99999999999887  68865 555432  111     1                   2333345555444


Q ss_pred             cCCCcEEEEecChh---------------hHHHHHHHHHHc-CCcEEEEecCCCChhhHHHHHHHH
Q 019500           97 ETKANASAIYVPPP---------------FAAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKAAL  146 (340)
Q Consensus        97 ~~~vDlavi~vp~~---------------~v~~~v~ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~a  146 (340)
                        +.|++++++|..               .+.++++...+. .-..+|+..+..+....+++.+.+
T Consensus        86 --~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l  149 (481)
T 2o3j_A           86 --EADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCIL  149 (481)
T ss_dssp             --HCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHH
T ss_pred             --cCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHH
Confidence              389999998753               266666665543 334566665555544334454444

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=95.18  E-value=0.063  Score=49.59  Aligned_cols=88  Identities=10%  Similarity=0.010  Sum_probs=55.9

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceec--Ccccc-------cCHHHhhccCCCcEEEEecChh---
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL--GLPVF-------NTVAEAKAETKANASAIYVPPP---  110 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~--G~p~y-------~sl~dip~~~~vDlavi~vp~~---  110 (340)
                      ++|+|.|++|.+|+.+++.|.+.|++++.........+++.  ++..+       .++.++.+  ++|++|-+....   
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vih~a~~~~~~   91 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALR--GLDGVIFSAGYYPSR   91 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTT--TCSEEEEC-------
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHc--CCCEEEECCccCcCC
Confidence            47899999999999999999999998774433211101111  22222       23445544  589998876421   


Q ss_pred             -------------hHHHHHHHHHHcCCcEEEEecC
Q 019500          111 -------------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       111 -------------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                                   ....+++.|.+.|++.+|.+++
T Consensus        92 ~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS  126 (342)
T 2x4g_A           92 PRRWQEEVASALGQTNPFYAACLQARVPRILYVGS  126 (342)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHTCSCEEEECC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence                         2356778888889887776665

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=95.16  E-value=0.027  Score=53.61  Aligned_cols=64  Identities=22%  Similarity=0.275  Sum_probs=45.8

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ceecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      ..+|.|+|. |++|+.+++.+..+|++++ ..|+.... +.....-.+.+++++..  ..|++++++|.
T Consensus       137 gktvGIiGl-G~IG~~vA~~l~~~G~~V~-~~dr~~~~~~~~~~~~~~~~l~ell~--~aDvV~l~lPl  201 (324)
T 3evt_A          137 GQQLLIYGT-GQIGQSLAAKASALGMHVI-GVNTTGHPADHFHETVAFTATADALA--TANFIVNALPL  201 (324)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESSCCCCTTCSEEEEGGGCHHHHH--HCSEEEECCCC
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhCCCEEE-EECCCcchhHhHhhccccCCHHHHHh--hCCEEEEcCCC
Confidence            335677799 9999999999999999966 56665310 11111223468888886  48999999994

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=95.13  E-value=0.032  Score=53.33  Aligned_cols=104  Identities=14%  Similarity=0.151  Sum_probs=63.3

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc--eecCcccccCHHHhhccCCCcEEEEecChhh-HHHHH-H
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAI-L  117 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~--~i~G~p~y~sl~dip~~~~vDlavi~vp~~~-v~~~v-~  117 (340)
                      ..+|.|+|. |++|+.+++.+..+|++++ ..||.....  .-.|+. +.+++++..  ..|++++++|... ...++ +
T Consensus       165 g~tvgIIGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~g~~-~~~l~ell~--~aDvV~l~~P~t~~t~~li~~  239 (335)
T 2g76_A          165 GKTLGILGL-GRIGREVATRMQSFGMKTI-GYDPIISPEVSASFGVQ-QLPLEEIWP--LCDFITVHTPLLPSTTGLLND  239 (335)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECSSSCHHHHHHTTCE-ECCHHHHGG--GCSEEEECCCCCTTTTTSBCH
T ss_pred             cCEEEEEeE-CHHHHHHHHHHHHCCCEEE-EECCCcchhhhhhcCce-eCCHHHHHh--cCCEEEEecCCCHHHHHhhCH
Confidence            335677799 9999999999999999866 678765211  123544 458999876  4899999999853 33333 2


Q ss_pred             HHHH-cCCcEE-EEecCCCChhhHHHHHHHHhccCCc
Q 019500          118 EAME-AELDLV-VCITEGIPQHDMVRVKAALNNQSKT  152 (340)
Q Consensus       118 ea~~-~Gvk~v-vi~t~Gf~e~~~~~l~~~aar~~gi  152 (340)
                      +..+ ..-..+ |..+.|- -.+.+++.+++ ++.++
T Consensus       240 ~~l~~mk~gailIN~arg~-vvd~~aL~~aL-~~g~i  274 (335)
T 2g76_A          240 NTFAQCKKGVRVVNCARGG-IVDEGALLRAL-QSGQC  274 (335)
T ss_dssp             HHHTTSCTTEEEEECSCTT-SBCHHHHHHHH-HHTSE
T ss_pred             HHHhhCCCCcEEEECCCcc-ccCHHHHHHHH-HhCCc
Confidence            2222 233343 3344442 23334455544 34433

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=95.13  E-value=0.016  Score=55.48  Aligned_cols=87  Identities=15%  Similarity=0.074  Sum_probs=60.8

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCC-------------CCCc----------e--ecC--ccccc--CH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPK-------------KGGT----------E--HLG--LPVFN--TV   91 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~-------------~~g~----------~--i~G--~p~y~--sl   91 (340)
                      +++|.|+|+ |+.|+.+.|.+.+. .+++++..+..             ..|+          .  +.|  ++++.  +.
T Consensus         1 mikVgI~G~-G~iGr~l~R~l~~~~~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp   79 (334)
T 3cmc_O            1 AVKVGINGF-GRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDP   79 (334)
T ss_dssp             CEEEEEESC-SHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             CeEEEEECC-CHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEecCCh
Confidence            368889999 99999999998876 56777443320             0010          0  123  34442  55


Q ss_pred             HHhh-ccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 019500           92 AEAK-AETKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (340)
Q Consensus        92 ~dip-~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi  129 (340)
                      ++++ .+.++|+++.++|.....+.+...++.|+|.+||
T Consensus        80 ~~i~w~~~~vDvV~~atg~~~s~e~a~~~l~~Gak~vVI  118 (334)
T 3cmc_O           80 ENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII  118 (334)
T ss_dssp             GGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE
T ss_pred             hhcCcccCccCEEEECCCchhhHHHHHHHHHCCCCEEEE
Confidence            5664 2125999999999999999999999999988664

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.10  E-value=0.053  Score=53.75  Aligned_cols=104  Identities=15%  Similarity=0.127  Sum_probs=64.0

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce----ecCccc-------ccCHHHhhccCCCcEEEEecChhh
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE----HLGLPV-------FNTVAEAKAETKANASAIYVPPPF  111 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~----i~G~p~-------y~sl~dip~~~~vDlavi~vp~~~  111 (340)
                      +|+|+|+ |.+|+.+++.|.+.|++++ .++.+... ++    +.+...       +.++.++.+  ++|++|.++|...
T Consensus         5 ~VlViGa-G~iG~~ia~~L~~~G~~V~-v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~--~~DvVIn~a~~~~   80 (450)
T 1ff9_A            5 SVLMLGS-GFVTRPTLDVLTDSGIKVT-VACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVA--KHDLVISLIPYTF   80 (450)
T ss_dssp             EEEEECC-STTHHHHHHHHHTTTCEEE-EEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHT--TSSEEEECCC--C
T ss_pred             EEEEECC-CHHHHHHHHHHHhCcCEEE-EEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHc--CCcEEEECCcccc
Confidence            5777794 9999999999998898844 55543200 11    111211       124445554  5999999999887


Q ss_pred             HHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEE
Q 019500          112 AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (340)
Q Consensus       112 v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi  155 (340)
                      ..++.++|++.|.+.+.  . .....+..++.+.+ +++|++++
T Consensus        81 ~~~i~~a~l~~g~~vvd--~-~~~~~~~~~l~~aA-~~aGv~~i  120 (450)
T 1ff9_A           81 HATVIKSAIRQKKHVVT--T-SYVSPAMMELDQAA-KDAGITVM  120 (450)
T ss_dssp             HHHHHHHHHHHTCEEEE--S-SCCCHHHHHTHHHH-HHTTCEEE
T ss_pred             chHHHHHHHhCCCeEEE--e-ecccHHHHHHHHHH-HHCCCeEE
Confidence            77788889998876532  2 22223344555554 67787755

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=95.08  E-value=0.028  Score=54.85  Aligned_cols=61  Identities=16%  Similarity=0.183  Sum_probs=46.8

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChh
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      .|.|+|. |++|+.+++.+..+|++++ ..||..  ....+...+.+++++..  ..|++++++|-.
T Consensus       121 tvGIIGl-G~IG~~vA~~l~a~G~~V~-~~d~~~--~~~~~~~~~~sl~ell~--~aDiV~l~~Plt  181 (381)
T 3oet_A          121 TIGIVGV-GNVGSRLQTRLEALGIRTL-LCDPPR--AARGDEGDFRTLDELVQ--EADVLTFHTPLY  181 (381)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEE-EECHHH--HHTTCCSCBCCHHHHHH--HCSEEEECCCCC
T ss_pred             EEEEEeE-CHHHHHHHHHHHHCCCEEE-EECCCh--HHhccCcccCCHHHHHh--hCCEEEEcCcCC
Confidence            4667799 9999999999999999976 677743  22212235779999987  489999999843

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=95.08  E-value=0.099  Score=47.58  Aligned_cols=88  Identities=23%  Similarity=0.075  Sum_probs=57.2

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcC-CeEEEeeC-CCCCC-c--eecCcccc-------cCHHHhhccCCCcEEEEecChh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYG-TKMVGGVT-PKKGG-T--EHLGLPVF-------NTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G-~~vv~~Vn-P~~~g-~--~i~G~p~y-------~sl~dip~~~~vDlavi~vp~~  110 (340)
                      .+|+|.|++|..|+.+++.|.+.| ++++.... |.... .  .-.|+.++       .++.++.+  ++|.++.+.+..
T Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~--~~d~vi~~a~~~   83 (299)
T 2wm3_A            6 KLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALN--GAYATFIVTNYW   83 (299)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCSEEEECCCHH
T ss_pred             CEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHh--cCCEEEEeCCCC
Confidence            357888999999999999999888 88774432 32200 0  01233222       23445554  599999887531


Q ss_pred             ----------hHHHHHHHHHHcCCcEEEEecC
Q 019500          111 ----------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       111 ----------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                                ....+++.|.+.|++.+|..++
T Consensus        84 ~~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~  115 (299)
T 2wm3_A           84 ESCSQEQEVKQGKLLADLARRLGLHYVVYSGL  115 (299)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred             ccccchHHHHHHHHHHHHHHHcCCCEEEEEcC
Confidence                      3456777888889998775443

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=95.08  E-value=0.028  Score=53.54  Aligned_cols=108  Identities=19%  Similarity=0.222  Sum_probs=65.2

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce--ecCcccccCHHHhhccCCCcEEEEecChh-hHHHHHH-
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--HLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAIL-  117 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~--i~G~p~y~sl~dip~~~~vDlavi~vp~~-~v~~~v~-  117 (340)
                      ..+|.|+|. |++|+.+++.+..+|++++ ..||....+.  -.|+. +.+++++..  ..|++++++|.. ....++. 
T Consensus       146 g~~vgIIG~-G~iG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~g~~-~~~l~e~l~--~aDiVil~vp~~~~t~~~i~~  220 (333)
T 2d0i_A          146 GKKVGILGM-GAIGKAIARRLIPFGVKLY-YWSRHRKVNVEKELKAR-YMDIDELLE--KSDIVILALPLTRDTYHIINE  220 (333)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHGGGTCEEE-EECSSCCHHHHHHHTEE-ECCHHHHHH--HCSEEEECCCCCTTTTTSBCH
T ss_pred             cCEEEEEcc-CHHHHHHHHHHHHCCCEEE-EECCCcchhhhhhcCce-ecCHHHHHh--hCCEEEEcCCCChHHHHHhCH
Confidence            345677799 9999999999999999865 6777652111  13544 348888765  489999999987 3333332 


Q ss_pred             ---HHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccC
Q 019500          118 ---EAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN  158 (340)
Q Consensus       118 ---ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPN  158 (340)
                         ...+.|  .++..+.|-. .+..++.+++ ++..+.-.|-.
T Consensus       221 ~~~~~mk~g--ilin~srg~~-vd~~aL~~aL-~~~~i~gaglD  260 (333)
T 2d0i_A          221 ERVKKLEGK--YLVNIGRGAL-VDEKAVTEAI-KQGKLKGYATD  260 (333)
T ss_dssp             HHHHHTBTC--EEEECSCGGG-BCHHHHHHHH-HTTCBCEEEES
T ss_pred             HHHhhCCCC--EEEECCCCcc-cCHHHHHHHH-HcCCceEEEec
Confidence               233445  4455454432 2333454544 34444444433

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=95.06  E-value=0.013  Score=54.60  Aligned_cols=114  Identities=16%  Similarity=0.270  Sum_probs=68.1

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce---ecCccc--ccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPV--FNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~---i~G~p~--y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      ..+|.|+|+ |++|+.+++.+..+|.+++ .+||.....+   -.|...  +.+++++..  ..|++++++|.....+..
T Consensus       155 g~~v~IiG~-G~iG~~~a~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~--~aDvVi~~~p~~~i~~~~  230 (293)
T 3d4o_A          155 GANVAVLGL-GRVGMSVARKFAALGAKVK-VGARESDLLARIAEMGMEPFHISKAAQELR--DVDVCINTIPALVVTANV  230 (293)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESSHHHHHHHHHTTSEEEEGGGHHHHTT--TCSEEEECCSSCCBCHHH
T ss_pred             CCEEEEEee-CHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHCCCeecChhhHHHHhc--CCCEEEECCChHHhCHHH
Confidence            345777898 9999999999999999755 6776541011   124443  357777765  589999999986543322


Q ss_pred             HHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEE-ccCCCCcccC
Q 019500          117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV-GPNCPGVIKP  165 (340)
Q Consensus       117 ~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi-GPNc~Gi~~p  165 (340)
                      -+..+.|. .++.++.|-.+.+.    +.+ ++.|++++ -||..|.+.|
T Consensus       231 l~~mk~~~-~lin~ar~~~~~~~----~~a-~~~Gv~~~~~~~l~~~v~p  274 (293)
T 3d4o_A          231 LAEMPSHT-FVIDLASKPGGTDF----RYA-EKRGIKALLVPGLPGIVAP  274 (293)
T ss_dssp             HHHSCTTC-EEEECSSTTCSBCH----HHH-HHHTCEEEECCCHHHHHCH
T ss_pred             HHhcCCCC-EEEEecCCCCCCCH----HHH-HHCCCEEEECCCCCcccCH
Confidence            22333332 33444444333333    222 45677765 4665555544

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.06  E-value=0.0089  Score=55.76  Aligned_cols=114  Identities=15%  Similarity=0.281  Sum_probs=68.1

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce---ecCccc--ccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPV--FNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~---i~G~p~--y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      ..+|.|+|+ |++|+.+++.+..+|++++ .+||.....+   -.|..+  +.+++++..  ..|++++++|.....+..
T Consensus       157 g~~v~IiG~-G~iG~~~a~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~--~aDvVi~~~p~~~i~~~~  232 (300)
T 2rir_A          157 GSQVAVLGL-GRTGMTIARTFAALGANVK-VGARSSAHLARITEMGLVPFHTDELKEHVK--DIDICINTIPSMILNQTV  232 (300)
T ss_dssp             TSEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESSHHHHHHHHHTTCEEEEGGGHHHHST--TCSEEEECCSSCCBCHHH
T ss_pred             CCEEEEEcc-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHCCCeEEchhhHHHHhh--CCCEEEECCChhhhCHHH
Confidence            345777798 9999999999999999755 6776541011   125443  467888765  589999999986543322


Q ss_pred             HHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEE-ccCCCCcccC
Q 019500          117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV-GPNCPGVIKP  165 (340)
Q Consensus       117 ~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi-GPNc~Gi~~p  165 (340)
                      -+..+.|. .++.++.|-...+.    +.+ ++.|++++ -||..|.+.|
T Consensus       233 ~~~mk~g~-~lin~a~g~~~~~~----~~a-~~~G~~~i~~pg~~g~v~~  276 (300)
T 2rir_A          233 LSSMTPKT-LILDLASRPGGTDF----KYA-EKQGIKALLAPGLPGIVAP  276 (300)
T ss_dssp             HTTSCTTC-EEEECSSTTCSBCH----HHH-HHHTCEEEECCCHHHHHCH
T ss_pred             HHhCCCCC-EEEEEeCCCCCcCH----HHH-HHCCCEEEECCCCCCcHHH
Confidence            22223332 33444444222333    222 45677765 5666665543

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=95.02  E-value=0.0098  Score=54.27  Aligned_cols=101  Identities=15%  Similarity=0.070  Sum_probs=63.0

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCcccccCHHHhhccCCCcEEEEecChhhHH---HHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAA---AAI  116 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~---i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~---~~v  116 (340)
                      +|.|+|+ |.+|+.+++.|.+.|++ +..+|++... ++   -.|.. +.++.++ .  +.|+++.++|+...+   +.+
T Consensus       118 ~v~iiG~-G~~g~~~a~~l~~~g~~-v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~--~~Divi~~tp~~~~~~~~~~l  191 (263)
T 2d5c_A          118 PALVLGA-GGAGRAVAFALREAGLE-VWVWNRTPQRALALAEEFGLR-AVPLEKA-R--EARLLVNATRVGLEDPSASPL  191 (263)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCC-EEEECSSHHHHHHHHHHHTCE-ECCGGGG-G--GCSEEEECSSTTTTCTTCCSS
T ss_pred             eEEEECC-cHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhccc-hhhHhhc-c--CCCEEEEccCCCCCCCCCCCC
Confidence            6888898 88999999999999985 4478876410 11   12444 6778887 5  599999999998643   122


Q ss_pred             -HHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEE
Q 019500          117 -LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (340)
Q Consensus       117 -~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi  155 (340)
                       .++++.|. .++-++.+ +.+.  ++.+.+ ++.|++++
T Consensus       192 ~~~~l~~g~-~viD~~~~-p~~t--~l~~~a-~~~g~~~v  226 (263)
T 2d5c_A          192 PAELFPEEG-AAVDLVYR-PLWT--RFLREA-KAKGLKVQ  226 (263)
T ss_dssp             CGGGSCSSS-EEEESCCS-SSSC--HHHHHH-HHTTCEEE
T ss_pred             CHHHcCCCC-EEEEeecC-Cccc--HHHHHH-HHCcCEEE
Confidence             23333443 23333333 2222  344444 56788877

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=94.99  E-value=0.096  Score=47.66  Aligned_cols=85  Identities=15%  Similarity=0.165  Sum_probs=57.2

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC--c---------eecCcccc-------cCHHHhhccCCCcEEEE
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG--T---------EHLGLPVF-------NTVAEAKAETKANASAI  105 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g--~---------~i~G~p~y-------~sl~dip~~~~vDlavi  105 (340)
                      +|+|.|++|..|+.+++.|.+.|++++..+.+....  .         .-.|+.++       .++.++.+  ++|.++.
T Consensus         6 ~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~--~~d~vi~   83 (308)
T 1qyc_A            6 RILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVK--NVDVVIS   83 (308)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHH--TCSEEEE
T ss_pred             EEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHc--CCCEEEE
Confidence            578889999999999999999999876444321100  0         01233322       23555554  5999998


Q ss_pred             ecCh---hhHHHHHHHHHHcC-CcEEEEec
Q 019500          106 YVPP---PFAAAAILEAMEAE-LDLVVCIT  131 (340)
Q Consensus       106 ~vp~---~~v~~~v~ea~~~G-vk~vvi~t  131 (340)
                      +.+.   .....+++.|.+.| ++.+| ++
T Consensus        84 ~a~~~~~~~~~~l~~aa~~~g~v~~~v-~S  112 (308)
T 1qyc_A           84 TVGSLQIESQVNIIKAIKEVGTVKRFF-PS  112 (308)
T ss_dssp             CCCGGGSGGGHHHHHHHHHHCCCSEEE-CS
T ss_pred             CCcchhhhhHHHHHHHHHhcCCCceEe-ec
Confidence            8765   34567888888888 99865 44

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=94.98  E-value=0.032  Score=53.10  Aligned_cols=64  Identities=13%  Similarity=0.219  Sum_probs=47.4

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce--ecCcccccCHHHhhccCCCcEEEEecChhh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--HLGLPVFNTVAEAKAETKANASAIYVPPPF  111 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~--i~G~p~y~sl~dip~~~~vDlavi~vp~~~  111 (340)
                      .+|.|+|. |++|+.+++.+..+|++++ .+|+....+.  -.|+. +.+++++..  ..|++++++|...
T Consensus       151 ~~vgIIG~-G~iG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~g~~-~~~l~~~l~--~aDvVil~vp~~~  216 (334)
T 2dbq_A          151 KTIGIIGL-GRIGQAIAKRAKGFNMRIL-YYSRTRKEEVERELNAE-FKPLEDLLR--ESDFVVLAVPLTR  216 (334)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCHHHHHHHCCE-ECCHHHHHH--HCSEEEECCCCCT
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhCCCEEE-EECCCcchhhHhhcCcc-cCCHHHHHh--hCCEEEECCCCCh
Confidence            35677798 9999999999999999865 6777652111  13444 358888766  4899999999865

>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}

Probab=94.95  E-value=0.095  Score=50.45  Aligned_cols=158  Identities=16%  Similarity=0.149  Sum_probs=91.4

Q ss_pred             EEEeCCCCCcchHHHH---HHHHc-CCeEEEeeCCCCCCcee-------cCcccccCHHHhhccCCCcEEEEecC-----
Q 019500           45 VICQGITGKNGTFHTE---QAIEY-GTKMVGGVTPKKGGTEH-------LGLPVFNTVAEAKAETKANASAIYVP-----  108 (340)
Q Consensus        45 ViVvGasgk~G~~v~~---~l~~~-G~~vv~~VnP~~~g~~i-------~G~p~y~sl~dip~~~~vDlavi~vp-----  108 (340)
                      ++|.+- |.+|+...|   -+.++ ++++++.++....|++.       .|+|++.|++++.+. .+|++++.+.     
T Consensus        10 ~vi~~~-g~~~~~~aKta~gl~r~~~~~iVgvid~~~~G~d~ge~~g~~~gipi~~~l~~al~~-~~d~lvig~a~~gG~   87 (349)
T 2obn_A           10 VAILLH-EGTTGTIGKTGLALLRYSEAPIVAVIDRNCAGQSLREITGIYRYVPIVKSVEAALEY-KPQVLVIGIAPKGGG   87 (349)
T ss_dssp             EEEECT-TTSSSSSCHHHHHHHHHCCSCEEEEECGGGTTSCHHHHHCCCSCCCEESSHHHHGGG-CCSEEEECCCCCCC-
T ss_pred             EEEEeC-CCCCcHHHHHhHHhhhcCCCcEEEEEeCCCCCCcHHHhcCCcCCCCccCCHHHHHhC-CCCEEEEEecCCCCC
Confidence            444454 555544333   34555 78899889877666543       259999999999864 7999999972     


Q ss_pred             -hhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCC-CCCCC-cEEE
Q 019500          109 -PPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGY-IHKPG-RIGI  185 (340)
Q Consensus       109 -~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~~~~~~~~~~~-~~~~G-~val  185 (340)
                       ++.+.+.+.+|+++|...+-  +-...-.+..++.+++ ++ |..++.=.-    +|..+...  ... .-.++ ++.+
T Consensus        88 l~~~~~~~i~~Al~~G~~Vvs--glh~~l~~~pel~~~A-~~-g~~i~dvr~----pp~~l~~~--~g~~~~v~~k~i~v  157 (349)
T 2obn_A           88 IPDDYWIELKTALQAGMSLVN--GLHTPLANIPDLNALL-QP-GQLIWDVRK----EPANLDVA--SGAARTLPCRRVLT  157 (349)
T ss_dssp             SCGGGHHHHHHHHHTTCEEEE--CSSSCCTTCHHHHHHC-CT-TCCEEETTC----CCSSCCCC--CSGGGGCSSEEEEE
T ss_pred             CCHHHHHHHHHHHHcCCcEEe--CccchhhCCHHHHHHH-Hc-CCEEEEecc----Cccccccc--ccceeeecceEEEE
Confidence             14667899999999998632  2222223333465554 67 888775331    22122111  110 00122 2444


Q ss_pred             EecCh-----HHHHHHHHHHHhCCCCceEEeecCC
Q 019500          186 VSRSG-----TLTYEAVFQTTAVGLGQSTCVGIGG  215 (340)
Q Consensus       186 vSQSG-----~l~~~~~~~~~~~giG~S~~vs~Gn  215 (340)
                      +.-.-     ..+.++...++++|+-..+ +.+|.
T Consensus       158 ~GTD~~VGK~~ts~~L~~~l~~~G~~a~~-~~tgq  191 (349)
T 2obn_A          158 VGTDMAIGKMSTSLELHWAAKLRGWRSKF-LATGQ  191 (349)
T ss_dssp             EESSSSSSHHHHHHHHHHHHHHTTCCEEE-ECCSH
T ss_pred             cCCCccccceeHHHHHHHHHHhcCCcEEE-Eeccc
Confidence            33322     3345566777888875444 55664

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=94.93  E-value=0.05  Score=49.86  Aligned_cols=92  Identities=10%  Similarity=0.105  Sum_probs=55.0

Q ss_pred             CcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCccc-------ccCHHHhhccCCCcEEEEecChhh
Q 019500           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPV-------FNTVAEAKAETKANASAIYVPPPF  111 (340)
Q Consensus        39 ~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~-------y~sl~dip~~~~vDlavi~vp~~~  111 (340)
                      .+++.+|+|.|++|.+|+.+++.|.+.|++++........ .. .++..       ..++.++.+..++|++|-+.....
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~-l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~   86 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL-PNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKSS   86 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC-TTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCCC
T ss_pred             ccCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc-ceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCcccc
Confidence            4567788999999999999999999999987744332221 11 12221       223444443224899988753211


Q ss_pred             ------------------HHHHHHHHHHc-CCcEEEEecC
Q 019500          112 ------------------AAAAILEAMEA-ELDLVVCITE  132 (340)
Q Consensus       112 ------------------v~~~v~ea~~~-Gvk~vvi~t~  132 (340)
                                        ...+++.|.+. +++.+|.+++
T Consensus        87 ~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS  126 (321)
T 2pk3_A           87 VKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGS  126 (321)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEE
T ss_pred             hhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcc
Confidence                              34566666554 5777776665

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=94.91  E-value=0.061  Score=52.38  Aligned_cols=89  Identities=13%  Similarity=0.050  Sum_probs=62.0

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc---CCeEEEeeCC-------------CCCCc---e---------ecC--cccc--cC
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTP-------------KKGGT---E---------HLG--LPVF--NT   90 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~---G~~vv~~VnP-------------~~~g~---~---------i~G--~p~y--~s   90 (340)
                      ++|.|+|+ |++|+.+++.+.+.   ++++++.-++             ...|+   +         +.|  ++++  .+
T Consensus         3 ikVgInGf-GrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d   81 (380)
T 2d2i_A            3 IRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN   81 (380)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred             cEEEEECc-CHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEecCC
Confidence            68899999 99999999998875   3677754332             00010   1         234  3343  35


Q ss_pred             HHHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500           91 VAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus        91 l~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      .++++- +.++|+++.++|.....+.+...++.|+|.+||=.+
T Consensus        82 p~~l~w~~~gvDvV~e~TG~f~s~e~a~~hl~aGakkVVIs~p  124 (380)
T 2d2i_A           82 PLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAP  124 (380)
T ss_dssp             GGGCCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSC
T ss_pred             hHHCCcccCCCCEEEECCCccccHHHHHHHHHcCCcEEEEcCC
Confidence            667651 115999999999999999999999999998664333

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=94.90  E-value=0.037  Score=52.08  Aligned_cols=63  Identities=14%  Similarity=0.144  Sum_probs=46.9

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc--eecCcccccCHHHhhccCCCcEEEEecChh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~--~i~G~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      .+|.|+|. |++|+.+++.+..+|++++ .+||....+  .-.|+.. .+++++..  ..|++++++|..
T Consensus       143 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~g~~~-~~l~ell~--~aDvV~l~~p~~  207 (307)
T 1wwk_A          143 KTIGIIGF-GRIGYQVAKIANALGMNIL-LYDPYPNEERAKEVNGKF-VDLETLLK--ESDVVTIHVPLV  207 (307)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCHHHHHHTTCEE-CCHHHHHH--HCSEEEECCCCS
T ss_pred             ceEEEEcc-CHHHHHHHHHHHHCCCEEE-EECCCCChhhHhhcCccc-cCHHHHHh--hCCEEEEecCCC
Confidence            35677799 9999999999999999866 677765211  1235543 47888876  489999999964

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=94.88  E-value=0.024  Score=54.72  Aligned_cols=90  Identities=14%  Similarity=0.079  Sum_probs=62.5

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCC-C--------ce-----------------ecC--ccccc--C
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKG-G--------TE-----------------HLG--LPVFN--T   90 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~-g--------~~-----------------i~G--~p~y~--s   90 (340)
                      +++|.|+|+ |+.|+.++|.|.+. .+++++.-+|... +        ++                 +.|  ++++.  +
T Consensus        17 ~ikVgI~G~-G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~d   95 (354)
T 3cps_A           17 QGTLGINGF-GRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKD   95 (354)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSC
T ss_pred             ceEEEEECC-CHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCC
Confidence            468899999 99999999998886 7888855444321 0        01                 112  23442  4


Q ss_pred             HHHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500           91 VAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus        91 l~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      .++++- +.++|+++.++|.....+.+...++.|+|.+||=.+
T Consensus        96 p~~i~w~~~~vDvV~eatg~~~s~e~a~~~l~~GakkvVId~p  138 (354)
T 3cps_A           96 PAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAP  138 (354)
T ss_dssp             GGGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSC
T ss_pred             hHHCCcccCCCCEEEECCCchhhHHHHHHHHHcCCcEEEEeCC
Confidence            555541 125899999999999999999999999987664333

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=94.85  E-value=0.077  Score=50.84  Aligned_cols=89  Identities=12%  Similarity=0.025  Sum_probs=62.0

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc---CCeEEEeeCCC----------C---CC----------ce--ecC--ccccc--C
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPK----------K---GG----------TE--HLG--LPVFN--T   90 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~---G~~vv~~VnP~----------~---~g----------~~--i~G--~p~y~--s   90 (340)
                      ++|.|+|+ |+.|+.+.+.|.+.   ++++++.-++.          +   .|          +.  +.|  ++++.  +
T Consensus         3 ikVgI~G~-G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d   81 (339)
T 3b1j_A            3 IRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN   81 (339)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred             eEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeeecCceEEEEecCC
Confidence            68899999 99999999998876   36777433220          0   00          01  123  34442  5


Q ss_pred             HHHhhcc-CCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500           91 VAEAKAE-TKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus        91 l~dip~~-~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      .++++-. .++|+++.|+|.....+.....++.|++.+||=.+
T Consensus        82 p~~l~w~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~  124 (339)
T 3b1j_A           82 PLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAP  124 (339)
T ss_dssp             GGGSCTTTTTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSC
T ss_pred             hHHCcccccCCCEEEECCCccccHHHHHHHHHcCCcEEEEeCC
Confidence            6677621 26999999999999999999999999998664333

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=94.84  E-value=0.027  Score=53.50  Aligned_cols=64  Identities=14%  Similarity=0.173  Sum_probs=45.9

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce---ecCcccccCHHHhhccCCCcEEEEecChh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~---i~G~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      ..+|.|+|. |++|+.+++.+..+|++++ .+|++....+   -.|+... +++++..  ..|++++++|..
T Consensus       155 g~~vgIIG~-G~iG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~-~l~e~l~--~aDvVi~~vp~~  221 (330)
T 2gcg_A          155 QSTVGIIGL-GRIGQAIARRLKPFGVQRF-LYTGRQPRPEEAAEFQAEFV-STPELAA--QSDFIVVACSLT  221 (330)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHGGGTCCEE-EEESSSCCHHHHHTTTCEEC-CHHHHHH--HCSEEEECCCCC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCCcchhHHHhcCceeC-CHHHHHh--hCCEEEEeCCCC
Confidence            345677799 9999999999999999865 5665431011   1344433 8888765  489999999974

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=94.83  E-value=0.16  Score=44.55  Aligned_cols=87  Identities=13%  Similarity=0.062  Sum_probs=56.3

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCC--eEEEee-CCCCCCce--ecC-------cccccCHHHhhccCCCcEEEEecChh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGT--KMVGGV-TPKKGGTE--HLG-------LPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~--~vv~~V-nP~~~g~~--i~G-------~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      .+|+|.|++|.+|+.+++.|.+.|+  +++... +|... .+  ..+       +.-..++.++.+  ++|++|-+....
T Consensus        19 ~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~-~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~vi~~ag~~   95 (242)
T 2bka_A           19 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTF-DEEAYKNVNQEVVDFEKLDDYASAFQ--GHDVGFCCLGTT   95 (242)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCC-CSGGGGGCEEEECCGGGGGGGGGGGS--SCSEEEECCCCC
T ss_pred             CeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCc-cccccCCceEEecCcCCHHHHHHHhc--CCCEEEECCCcc
Confidence            3578899999999999999999998  866332 23221 11  111       222233444444  589999876432


Q ss_pred             ---------------hHHHHHHHHHHcCCcEEEEecC
Q 019500          111 ---------------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       111 ---------------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                                     ....+++.|.+.+++.+|.+++
T Consensus        96 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS  132 (242)
T 2bka_A           96 RGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSS  132 (242)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             cccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEcc
Confidence                           2345677777888888777776

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=94.81  E-value=0.054  Score=51.94  Aligned_cols=91  Identities=13%  Similarity=-0.005  Sum_probs=62.6

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc---CCeEEEeeC-C-------------CCCC-----------ce--ecCcc--cc-
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVT-P-------------KKGG-----------TE--HLGLP--VF-   88 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~---G~~vv~~Vn-P-------------~~~g-----------~~--i~G~p--~y-   88 (340)
                      +++|.|+|+ |+.|+.+.+.|.+.   .+++++ || +             +..|           +.  +.|.+  ++ 
T Consensus         1 ~ikVgInG~-G~IGr~llR~l~~~~~p~~eiva-Ind~~~~~~~a~ll~sds~~G~~~~~v~~~~~~~l~v~g~~i~v~~   78 (337)
T 1rm4_O            1 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVV-INDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVS   78 (337)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSCSEEEEE-EECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEEC
T ss_pred             CeEEEEECC-CHHHHHHHHHHHhCCCCCeEEEE-EEcCCCHHHHHHHhcccccCCCccceeEEecCCeEEECCeEEEEEe
Confidence            368889999 99999999998876   245663 44 1             0000           11  33422  33 


Q ss_pred             -cCHHHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCC
Q 019500           89 -NTVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIP  135 (340)
Q Consensus        89 -~sl~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~  135 (340)
                       .+.++++- +.++|+++.++|.....+.+...++.|+|.++ +++.+.
T Consensus        79 ~~dp~~i~w~~~gvDiV~eatg~~~s~e~a~~~l~~Gak~V~-iSap~r  126 (337)
T 1rm4_O           79 DRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL-ITAPGK  126 (337)
T ss_dssp             CSCGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEE-ESSCCB
T ss_pred             cCChhhCcccccCCCEEEECCCchhhHHHHHHHHHcCCEEEE-ECCccc
Confidence             24555541 12589999999999999999999999999855 677665

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=94.79  E-value=0.058  Score=50.11  Aligned_cols=93  Identities=8%  Similarity=0.042  Sum_probs=57.0

Q ss_pred             CcCCeEEEEeCCCCCcchHHHHHHHHcC--CeEEEeeCCCC-CC--cee------cCcccc-------cCHHHhhccCCC
Q 019500           39 VDKNTRVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPKK-GG--TEH------LGLPVF-------NTVAEAKAETKA  100 (340)
Q Consensus        39 ~p~~iaViVvGasgk~G~~v~~~l~~~G--~~vv~~VnP~~-~g--~~i------~G~p~y-------~sl~dip~~~~v  100 (340)
                      ..+..+|+|.|++|.+|+.+++.|.+.|  ++++ .++... ..  ..+      .++..+       .++.++.+..++
T Consensus        21 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~   99 (346)
T 4egb_A           21 QSNAMNILVTGGAGFIGSNFVHYMLQSYETYKII-NFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDV   99 (346)
T ss_dssp             ---CEEEEEETTTSHHHHHHHHHHHHHCTTEEEE-EEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTC
T ss_pred             ccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEE-EEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCC
Confidence            3456789999999999999999999988  5555 443221 00  011      122222       234455442248


Q ss_pred             cEEEEecChh------------------hHHHHHHHHHHcCCcEEEEecC
Q 019500          101 NASAIYVPPP------------------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       101 Dlavi~vp~~------------------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      |++|-+....                  ....+++.|.+.|++.+|.+++
T Consensus       100 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS  149 (346)
T 4egb_A          100 QVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVST  149 (346)
T ss_dssp             CEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEE
T ss_pred             CEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence            9998765321                  1356788888889998776664

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=94.77  E-value=0.058  Score=51.11  Aligned_cols=89  Identities=13%  Similarity=0.017  Sum_probs=55.4

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcC-CeEEEeeCCCCCCc-ee---cCcccc-------cCHHHhhccCCCcEEEEecCh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGGT-EH---LGLPVF-------NTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G-~~vv~~VnP~~~g~-~i---~G~p~y-------~sl~dip~~~~vDlavi~vp~  109 (340)
                      ..+|+|.|++|.+|+.+++.|.+.| ++++.......... .+   .++..+       .++.++.+  ++|++|-+...
T Consensus        32 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~--~~d~Vih~A~~  109 (377)
T 2q1s_A           32 NTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQD--EYDYVFHLATY  109 (377)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCS--CCSEEEECCCC
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhh--CCCEEEECCCc
Confidence            4578899999999999999999999 98774433211100 01   122222       12334443  68999987542


Q ss_pred             h------------------hHHHHHHHHHHc-CCcEEEEecC
Q 019500          110 P------------------FAAAAILEAMEA-ELDLVVCITE  132 (340)
Q Consensus       110 ~------------------~v~~~v~ea~~~-Gvk~vvi~t~  132 (340)
                      .                  ....+++.|.+. +++.+|.+++
T Consensus       110 ~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS  151 (377)
T 2q1s_A          110 HGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAA  151 (377)
T ss_dssp             SCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEE
T ss_pred             cCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCC
Confidence            1                  234566677777 8887776665

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=94.76  E-value=0.043  Score=52.26  Aligned_cols=63  Identities=16%  Similarity=0.169  Sum_probs=46.2

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee-cCcccccCHHHhhccCCCcEEEEecChh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-LGLPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i-~G~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      .+|.|+|. |++|+.+++.+..+|++++ ..||... +.. .+.....+++++..  ..|++++++|..
T Consensus       147 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~-~~~~~~~~~~~~l~ell~--~aDvV~l~~p~~  210 (333)
T 1j4a_A          147 QVVGVVGT-GHIGQVFMQIMEGFGAKVI-TYDIFRN-PELEKKGYYVDSLDDLYK--QADVISLHVPDV  210 (333)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCC-HHHHHTTCBCSCHHHHHH--HCSEEEECSCCC
T ss_pred             CEEEEEcc-CHHHHHHHHHHHHCCCEEE-EECCCcc-hhHHhhCeecCCHHHHHh--hCCEEEEcCCCc
Confidence            35667799 9999999999999999866 6777652 111 12333348888876  489999999953

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=94.73  E-value=0.13  Score=46.74  Aligned_cols=83  Identities=17%  Similarity=0.161  Sum_probs=56.0

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCC-CCC----c-----e--ecCcccc-------cCHHHhhccCCCcEEE
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK-KGG----T-----E--HLGLPVF-------NTVAEAKAETKANASA  104 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~-~~g----~-----~--i~G~p~y-------~sl~dip~~~~vDlav  104 (340)
                      +|+|.|++|..|+.+++.|.+.|++++..+.+. ...    +     +  -.|+.++       .++.++.+  .+|.+|
T Consensus         4 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~--~~d~vi   81 (307)
T 2gas_A            4 KILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIK--QVDIVI   81 (307)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCSEEE
T ss_pred             EEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHh--CCCEEE
Confidence            477889999999999999999999876544322 000    0     0  1233322       23455554  599999


Q ss_pred             EecCh---hhHHHHHHHHHHcC-CcEEE
Q 019500          105 IYVPP---PFAAAAILEAMEAE-LDLVV  128 (340)
Q Consensus       105 i~vp~---~~v~~~v~ea~~~G-vk~vv  128 (340)
                      -+.+.   .....+++.|.+.| ++.+|
T Consensus        82 ~~a~~~~~~~~~~l~~aa~~~g~v~~~v  109 (307)
T 2gas_A           82 CAAGRLLIEDQVKIIKAIKEAGNVKKFF  109 (307)
T ss_dssp             ECSSSSCGGGHHHHHHHHHHHCCCSEEE
T ss_pred             ECCcccccccHHHHHHHHHhcCCceEEe
Confidence            88764   45677888888888 99865

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=94.70  E-value=0.039  Score=53.32  Aligned_cols=65  Identities=15%  Similarity=0.226  Sum_probs=49.0

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCe-EEEeeCCCCCCce---ecCcccccCHHHhhccCCCcEEEEecChh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~-vv~~VnP~~~g~~---i~G~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      ..+|.|+|. |++|+.+++.+..+|++ ++ ..|+.....+   -.|+..+.+++++..  ..|++++++|..
T Consensus       164 g~tvgIIG~-G~IG~~vA~~l~~~G~~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~~P~t  232 (364)
T 2j6i_A          164 GKTIATIGA-GRIGYRVLERLVPFNPKELL-YYDYQALPKDAEEKVGARRVENIEELVA--QADIVTVNAPLH  232 (364)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHGGGCCSEEE-EECSSCCCHHHHHHTTEEECSSHHHHHH--TCSEEEECCCCS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCcEEE-EECCCccchhHHHhcCcEecCCHHHHHh--cCCEEEECCCCC
Confidence            335677799 99999999999999997 66 6776541111   245555678999886  589999999985

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=94.69  E-value=0.023  Score=49.37  Aligned_cols=29  Identities=21%  Similarity=0.377  Sum_probs=25.7

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEe
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGG   72 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~   72 (340)
                      +|+|.|++|.+|+.+++.|.+.|++++..
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~   30 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAV   30 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEE
Confidence            58899999999999999999999987744

>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*

Probab=94.67  E-value=0.074  Score=51.93  Aligned_cols=110  Identities=14%  Similarity=0.063  Sum_probs=66.9

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-C-CeEEEe-eCCCCC---------C---ceecCcccccC----------------
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-G-TKMVGG-VTPKKG---------G---TEHLGLPVFNT----------------   90 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G-~~vv~~-VnP~~~---------g---~~i~G~p~y~s----------------   90 (340)
                      +++|.|+|++|.+|+.+++.+.++ + |++++. .+.+..         +   --+.....|.+                
T Consensus         4 m~rI~ILGsTGSIG~~~l~vi~~~p~~~~v~al~ag~ni~~l~~~~~~f~~~~v~v~d~~~~~~l~~~l~~~~~~v~~g~   83 (388)
T 1r0k_A            4 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGA   83 (388)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESH
T ss_pred             ceEEEEECCCeEeHHHHHHHHHhCcCcEEEEEEEcCCCHHHHHHHHHHcCCcEEEEcChHHHHHHHHHhccCCcEEEeCc
Confidence            367888899999999999988875 3 776643 222110         0   00111111211                


Q ss_pred             --HHHhhccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCCh-hhHHHHHHHHhccCCcEEE
Q 019500           91 --VAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQ-HDMVRVKAALNNQSKTRLV  155 (340)
Q Consensus        91 --l~dip~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e-~~~~~l~~~aar~~girvi  155 (340)
                        +.++.... +|+++.+++.........+|+++|.+.+  +...-.. .....+.+.+ +++|+.++
T Consensus        84 ~~~~el~~~~-iDvVV~ai~G~aGl~ptlaAi~aGK~Vv--lANKE~lv~~G~~l~~~A-~~~gv~li  147 (388)
T 1r0k_A           84 DALVEAAMMG-ADWTMAAIIGCAGLKATLAAIRKGKTVA--LANKESLVSAGGLMIDAV-REHGTTLL  147 (388)
T ss_dssp             HHHHHHHTSC-CSEEEECCCSGGGHHHHHHHHHTTSEEE--ECCSHHHHTTHHHHHHHH-HHHTCEEE
T ss_pred             cHHHHHHcCC-CCEEEEeCCCHHHHHHHHHHHHCCCEEE--EeCcHHHHhhHHHHHHHH-HHcCCEEE
Confidence              23455444 8999999988778888899999997653  2322110 1234455554 67888874

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=94.65  E-value=0.13  Score=47.14  Aligned_cols=84  Identities=13%  Similarity=0.199  Sum_probs=57.0

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCC-CCC--c--------eecCcccc-------cCHHHhhccCCCcEEE
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK-KGG--T--------EHLGLPVF-------NTVAEAKAETKANASA  104 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~-~~g--~--------~i~G~p~y-------~sl~dip~~~~vDlav  104 (340)
                      .+|+|.|++|..|+.+++.|.+.|++++...... ...  .        .-.|+.++       .++.++.+  .+|.++
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~--~~d~vi   82 (321)
T 3c1o_A            5 EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLK--QVDIVI   82 (321)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCSEEE
T ss_pred             cEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHc--CCCEEE
Confidence            3578889999999999999999999876444322 100  0        01233222       23555554  599999


Q ss_pred             EecCh---hhHHHHHHHHHHcC-CcEEE
Q 019500          105 IYVPP---PFAAAAILEAMEAE-LDLVV  128 (340)
Q Consensus       105 i~vp~---~~v~~~v~ea~~~G-vk~vv  128 (340)
                      .+...   .....+++.|.+.| ++.+|
T Consensus        83 ~~a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (321)
T 3c1o_A           83 SALPFPMISSQIHIINAIKAAGNIKRFL  110 (321)
T ss_dssp             ECCCGGGSGGGHHHHHHHHHHCCCCEEE
T ss_pred             ECCCccchhhHHHHHHHHHHhCCccEEe
Confidence            88764   45677888888999 99865

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.57  E-value=0.043  Score=46.71  Aligned_cols=85  Identities=14%  Similarity=0.205  Sum_probs=50.9

Q ss_pred             EEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCC-ce--ecCcccc-c---C---HHHh-hccCCCcEEEEecChhh
Q 019500           44 RVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-TE--HLGLPVF-N---T---VAEA-KAETKANASAIYVPPPF  111 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g-~~--i~G~p~y-~---s---l~di-p~~~~vDlavi~vp~~~  111 (340)
                      +|+|+|+ |++|..+++.|.+. |++++ .++.+... +.  -.|..++ .   +   +.++ .- .+.|++++++|...
T Consensus        41 ~v~IiG~-G~~G~~~a~~L~~~~g~~V~-vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~-~~ad~vi~~~~~~~  117 (183)
T 3c85_A           41 QVLILGM-GRIGTGAYDELRARYGKISL-GIEIREEAAQQHRSEGRNVISGDATDPDFWERILDT-GHVKLVLLAMPHHQ  117 (183)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHHCSCEE-EEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSC-CCCCEEEECCSSHH
T ss_pred             cEEEECC-CHHHHHHHHHHHhccCCeEE-EEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCC-CCCCEEEEeCCChH
Confidence            5777798 99999999999998 99866 55554310 01  1344432 2   2   2332 11 25899999999654


Q ss_pred             H-HHHHHHHHHcC-CcEEEEec
Q 019500          112 A-AAAILEAMEAE-LDLVVCIT  131 (340)
Q Consensus       112 v-~~~v~ea~~~G-vk~vvi~t  131 (340)
                      . ..++..+.+.+ ...++..+
T Consensus       118 ~~~~~~~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          118 GNQTALEQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEEE
T ss_pred             HHHHHHHHHHHHCCCCEEEEEE
Confidence            4 34445555556 34444333

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=94.56  E-value=0.16  Score=46.33  Aligned_cols=84  Identities=17%  Similarity=0.155  Sum_probs=56.3

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC--ce--------ecCcccc-------cCHHHhhccCCCcEEEE
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG--TE--------HLGLPVF-------NTVAEAKAETKANASAI  105 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g--~~--------i~G~p~y-------~sl~dip~~~~vDlavi  105 (340)
                      .+|+|.|++|..|+.+++.|.+.|++++..+......  +.        -.|+.++       .++.++.+  ++|.++.
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~--~~d~vi~   82 (313)
T 1qyd_A            5 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALK--QVDVVIS   82 (313)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHT--TCSEEEE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHh--CCCEEEE
Confidence            3578889999999999999999999877444321100  00        1233322       23555554  5999998


Q ss_pred             ecCh-------hhHHHHHHHHHHcC-CcEEE
Q 019500          106 YVPP-------PFAAAAILEAMEAE-LDLVV  128 (340)
Q Consensus       106 ~vp~-------~~v~~~v~ea~~~G-vk~vv  128 (340)
                      +...       .....+++.|.+.| ++.+|
T Consensus        83 ~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v  113 (313)
T 1qyd_A           83 ALAGGVLSHHILEQLKLVEAIKEAGNIKRFL  113 (313)
T ss_dssp             CCCCSSSSTTTTTHHHHHHHHHHSCCCSEEE
T ss_pred             CCccccchhhHHHHHHHHHHHHhcCCCceEE
Confidence            7753       35667888888898 99865

>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*

Probab=94.56  E-value=0.14  Score=49.70  Aligned_cols=106  Identities=20%  Similarity=0.256  Sum_probs=67.4

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc-CCeEEEe---------------eCCCCCCceecCccccc-----------CHHHhh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGG---------------VTPKKGGTEHLGLPVFN-----------TVAEAK   95 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~---------------VnP~~~g~~i~G~p~y~-----------sl~dip   95 (340)
                      .+|.|+|.+|.+|+.+++.+.++ .|++++.               .+|+.  -.+..-..|.           .+.++.
T Consensus         4 k~i~ILGsTGSIG~~tldVi~~~~~~~vvaL~a~~n~~~l~~q~~~f~p~~--v~v~~~~~~~~~l~~~~~G~~~l~el~   81 (376)
T 3a06_A            4 RTLVILGATGSIGTQTLDVLKKVKGIRLIGISFHSNLELAFKIVKEFNVKN--VAITGDVEFEDSSINVWKGSHSIEEML   81 (376)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSCSEEEEEEEESSCHHHHHHHHHHHTCCE--EEECSSCCCCCSSSEEEESTTHHHHHH
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCeEEEEEEccCCHHHHHHHHHHcCCCE--EEEccHHHHHHHHHHHccCHHHHHHHh
Confidence            45777799999999998888776 6777755               23332  1111212222           123444


Q ss_pred             ccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChh---hHHHHHHHHhccCCcEEE
Q 019500           96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQH---DMVRVKAALNNQSKTRLV  155 (340)
Q Consensus        96 ~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~---~~~~l~~~aar~~girvi  155 (340)
                      ...++|+++.+++......-..+|+++|.+.+  ++..  |.   ....+.+.+ +++|.+++
T Consensus        82 ~~~~~D~Vv~AivG~aGL~ptlaAi~aGK~va--LANK--EsLV~aG~li~~~a-~~~g~~ll  139 (376)
T 3a06_A           82 EALKPDITMVAVSGFSGLRAVLASLEHSKRVC--LANK--ESLVCGGFLVKKKL-KEKGTELI  139 (376)
T ss_dssp             HHHCCSEEEECCCSTTHHHHHHHHHHHCSEEE--ECCS--HHHHHHHHHHHHHH-HHHCCEEE
T ss_pred             cCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEE--EeCh--HHHHhhHHHHHHHH-HHcCCEEE
Confidence            32248999999999999999999999997653  3443  21   223344444 66777765

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=94.54  E-value=0.18  Score=47.73  Aligned_cols=90  Identities=8%  Similarity=0.009  Sum_probs=57.7

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee--cCccc-------ccCHHHhhccCCCcEEEEecChh-
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH--LGLPV-------FNTVAEAKAETKANASAIYVPPP-  110 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i--~G~p~-------y~sl~dip~~~~vDlavi~vp~~-  110 (340)
                      ++.+|+|.|++|.+|+.+++.|.+.|++++............  .++..       ..++.++.+  ++|++|-+.... 
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~--~~d~Vih~A~~~~  105 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTE--GVDHVFNLAADMG  105 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHT--TCSEEEECCCCCC
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhC--CCCEEEECceecC
Confidence            456789999999999999999999999877443322110110  12222       223555554  699998875321 


Q ss_pred             ------------------hHHHHHHHHHHcCCcEEEEecC
Q 019500          111 ------------------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       111 ------------------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                                        ....+++.|.+.+++.+|.+++
T Consensus       106 ~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS  145 (379)
T 2c5a_A          106 GMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASS  145 (379)
T ss_dssp             CHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEee
Confidence                              1245677788889988776665

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=94.50  E-value=0.058  Score=43.20  Aligned_cols=88  Identities=9%  Similarity=0.081  Sum_probs=53.4

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccc-c---CHHHhhc--cCCCcEEEEecChh--hH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVF-N---TVAEAKA--ETKANASAIYVPPP--FA  112 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y-~---sl~dip~--~~~vDlavi~vp~~--~v  112 (340)
                      +|+|+|+ |.+|+.+++.|.+.|++++ .++++... +.  -.|...+ .   +.+.+.+  -.++|+++++++.+  ..
T Consensus         8 ~v~I~G~-G~iG~~~a~~l~~~g~~v~-~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~~   85 (144)
T 2hmt_A            8 QFAVIGL-GRFGGSIVKELHRMGHEVL-AVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAS   85 (144)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCCE-EEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHHHH
T ss_pred             cEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchHHH
Confidence            4677798 9999999999999998854 44443200 00  0122221 1   2222221  12589999999864  34


Q ss_pred             HHHHHHHHHcCCcEEEEecCC
Q 019500          113 AAAILEAMEAELDLVVCITEG  133 (340)
Q Consensus       113 ~~~v~ea~~~Gvk~vvi~t~G  133 (340)
                      ..+...+.+.|.+.++..+.+
T Consensus        86 ~~~~~~~~~~~~~~ii~~~~~  106 (144)
T 2hmt_A           86 TLTTLLLKELDIPNIWVKAQN  106 (144)
T ss_dssp             HHHHHHHHHTTCSEEEEECCS
T ss_pred             HHHHHHHHHcCCCeEEEEeCC
Confidence            456677777888876655544

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=94.46  E-value=0.017  Score=55.59  Aligned_cols=65  Identities=11%  Similarity=0.116  Sum_probs=49.6

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc--eecCcccccCHHHhhccCCCcEEEEecChh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~--~i~G~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      ..+|.|+|. |++|+.+++.+..+|++++ ..||....+  .-.|+..+.+++++..  ..|++++++|..
T Consensus       160 g~tvGIIGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~g~~~~~~l~ell~--~aDiV~l~~Plt  226 (352)
T 3gg9_A          160 GQTLGIFGY-GKIGQLVAGYGRAFGMNVL-VWGRENSKERARADGFAVAESKDALFE--QSDVLSVHLRLN  226 (352)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSHHHHHHHHHTTCEECSSHHHHHH--HCSEEEECCCCS
T ss_pred             CCEEEEEeE-CHHHHHHHHHHHhCCCEEE-EECCCCCHHHHHhcCceEeCCHHHHHh--hCCEEEEeccCc
Confidence            345677799 9999999999999999876 677753101  1357766679999987  489999999853

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=94.45  E-value=0.064  Score=48.22  Aligned_cols=85  Identities=19%  Similarity=0.263  Sum_probs=55.9

Q ss_pred             EEEeCCCCCcchHHHHHHHHc--CCeEEEeeC-CCCCCcee--cCcccc-------cCHHHhhccCCCcEEEEecCh---
Q 019500           45 VICQGITGKNGTFHTEQAIEY--GTKMVGGVT-PKKGGTEH--LGLPVF-------NTVAEAKAETKANASAIYVPP---  109 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~--G~~vv~~Vn-P~~~g~~i--~G~p~y-------~sl~dip~~~~vDlavi~vp~---  109 (340)
                      |+|.|++|.+|+.+++.|.+.  |++++.... |... .++  .++.++       .++.++.+  ++|.++-+...   
T Consensus         2 ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~vi~~a~~~~~   78 (286)
T 2zcu_A            2 IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKA-QALAAQGITVRQADYGDEAALTSALQ--GVEKLLLISSSEVG   78 (286)
T ss_dssp             EEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTC-HHHHHTTCEEEECCTTCHHHHHHHTT--TCSEEEECC-----
T ss_pred             EEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhh-hhhhcCCCeEEEcCCCCHHHHHHHHh--CCCEEEEeCCCCch
Confidence            678899999999999999987  888764432 2221 111  122222       23445554  58999877643   


Q ss_pred             ---hhHHHHHHHHHHcCCcEEEEecC
Q 019500          110 ---PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       110 ---~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                         .....+++.|.+.|++.+|.+++
T Consensus        79 ~~~~~~~~l~~a~~~~~~~~~v~~Ss  104 (286)
T 2zcu_A           79 QRAPQHRNVINAAKAAGVKFIAYTSL  104 (286)
T ss_dssp             ---CHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEEECC
Confidence               35667788888889988776665

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=94.43  E-value=0.024  Score=52.49  Aligned_cols=93  Identities=14%  Similarity=-0.007  Sum_probs=59.8

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee---cCc---ccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH---LGL---PVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i---~G~---p~y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      .+|.|+|+ |.+|......|.+.|+++. .++++..+-+.   .|.   ++..+..+... .+.|+++++||+..+.+++
T Consensus         3 mkI~iiGa-Ga~G~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~D~vilavk~~~~~~~l   79 (294)
T 3g17_A            3 LSVAIIGP-GAVGTTIAYELQQSLPHTT-LIGRHAKTITYYTVPHAPAQDIVVKGYEDVT-NTFDVIIIAVKTHQLDAVI   79 (294)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHCTTCE-EEESSCEEEEEESSTTSCCEEEEEEEGGGCC-SCEEEEEECSCGGGHHHHG
T ss_pred             cEEEEECC-CHHHHHHHHHHHHCCCeEE-EEEeccCcEEEEecCCeeccceecCchHhcC-CCCCEEEEeCCccCHHHHH
Confidence            35677799 9999999999998888744 55544311111   231   12222223221 2589999999999999998


Q ss_pred             HHHHHc-CC-cEEEEecCCCChhh
Q 019500          117 LEAMEA-EL-DLVVCITEGIPQHD  138 (340)
Q Consensus       117 ~ea~~~-Gv-k~vvi~t~Gf~e~~  138 (340)
                      ++.... +- ..++.++.|+..++
T Consensus        80 ~~l~~~l~~~~~iv~~~nGi~~~~  103 (294)
T 3g17_A           80 PHLTYLAHEDTLIILAQNGYGQLE  103 (294)
T ss_dssp             GGHHHHEEEEEEEEECCSSCCCGG
T ss_pred             HHHHHhhCCCCEEEEeccCcccHh
Confidence            887654 21 24567788986543

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=94.40  E-value=0.13  Score=48.70  Aligned_cols=88  Identities=15%  Similarity=0.081  Sum_probs=56.9

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeC-CCCCC-cee---cCccc-----c---cCHHHhhccCCCcEEEEecCh-
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGG-TEH---LGLPV-----F---NTVAEAKAETKANASAIYVPP-  109 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~Vn-P~~~g-~~i---~G~p~-----y---~sl~dip~~~~vDlavi~vp~-  109 (340)
                      +|+|.|++|..|+.+++.|.+.|++++..+. +.... ..+   .++..     +   .++.++.+  .+|.++.+... 
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~--~~d~Vi~~a~~~   84 (352)
T 1xgk_A            7 TIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFE--GAHLAFINTTSQ   84 (352)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHT--TCSEEEECCCST
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHh--cCCEEEEcCCCC
Confidence            5778899999999999999999998775443 22100 000   12221     1   23444444  58999876643 


Q ss_pred             -----hhHHHHHHHHHHcC-CcEEEEecCC
Q 019500          110 -----PFAAAAILEAMEAE-LDLVVCITEG  133 (340)
Q Consensus       110 -----~~v~~~v~ea~~~G-vk~vvi~t~G  133 (340)
                           .....+++.|.+.| ++.+|.+++.
T Consensus        85 ~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~  114 (352)
T 1xgk_A           85 AGDEIAIGKDLADAAKRAGTIQHYIYSSMP  114 (352)
T ss_dssp             TSCHHHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred             CcHHHHHHHHHHHHHHHcCCccEEEEeCCc
Confidence                 23466777888889 9887777764

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=94.34  E-value=0.046  Score=51.05  Aligned_cols=90  Identities=9%  Similarity=0.068  Sum_probs=58.9

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee--cCcccc----------cCHHHhhccCCCcEEEEecCh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVF----------NTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i--~G~p~y----------~sl~dip~~~~vDlavi~vp~  109 (340)
                      .+|.|+|+ |.+|......|. .|.++. .++++... +.+  .|+.+.          ..-.+..  .+.|++++++|+
T Consensus         3 mkI~IiGa-Ga~G~~~a~~L~-~g~~V~-~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~--~~~D~vilavK~   77 (307)
T 3ego_A            3 LKIGIIGG-GSVGLLCAYYLS-LYHDVT-VVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSIN--SDFDLLVVTVKQ   77 (307)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-TTSEEE-EECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCC--SCCSEEEECCCG
T ss_pred             CEEEEECC-CHHHHHHHHHHh-cCCceE-EEECCHHHHHHHHhCCceEecCCCeeccccccccccc--CCCCEEEEEeCH
Confidence            46788899 999999999888 888755 56654300 111  233221          1001212  258999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChh
Q 019500          110 PFAAAAILEAMEAELDLVVCITEGIPQH  137 (340)
Q Consensus       110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~  137 (340)
                      ..+.+++++....+-+.++.++.|+..+
T Consensus        78 ~~~~~~l~~l~~~~~~~ivs~~nGi~~~  105 (307)
T 3ego_A           78 HQLQSVFSSLERIGKTNILFLQNGMGHI  105 (307)
T ss_dssp             GGHHHHHHHTTSSCCCEEEECCSSSHHH
T ss_pred             HHHHHHHHHhhcCCCCeEEEecCCccHH
Confidence            9999999877554434477788898643

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=94.33  E-value=0.022  Score=53.54  Aligned_cols=86  Identities=14%  Similarity=0.021  Sum_probs=55.9

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee------------cCcccccCHHHhhccCCCcEEEEecChh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH------------LGLPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i------------~G~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      .+|.|+|+ |.||.-++.++. .|++++ ..|++.  +..            .++....+++++.   +.|++|.++|.+
T Consensus        13 ~~V~vIG~-G~MG~~iA~~la-aG~~V~-v~d~~~--~~~~~~~~~l~~~~~~~i~~~~~~~~~~---~aDlVieavpe~   84 (293)
T 1zej_A           13 MKVFVIGA-GLMGRGIAIAIA-SKHEVV-LQDVSE--KALEAAREQIPEELLSKIEFTTTLEKVK---DCDIVMEAVFED   84 (293)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-TTSEEE-EECSCH--HHHHHHHHHSCGGGGGGEEEESSCTTGG---GCSEEEECCCSC
T ss_pred             CeEEEEee-CHHHHHHHHHHH-cCCEEE-EEECCH--HHHHHHHHHHHHHHhCCeEEeCCHHHHc---CCCEEEEcCcCC
Confidence            34566699 999999999999 999855 666654  211            1555567787743   489999999987


Q ss_pred             hH--HHHHHHHHHcCCcEEEE--ecCCCChhh
Q 019500          111 FA--AAAILEAMEAELDLVVC--ITEGIPQHD  138 (340)
Q Consensus       111 ~v--~~~v~ea~~~Gvk~vvi--~t~Gf~e~~  138 (340)
                      ..  ..++.+..+.  +..++  -|+.++.++
T Consensus        85 ~~vk~~l~~~l~~~--~~~IlasntSti~~~~  114 (293)
T 1zej_A           85 LNTKVEVLREVERL--TNAPLCSNTSVISVDD  114 (293)
T ss_dssp             HHHHHHHHHHHHTT--CCSCEEECCSSSCHHH
T ss_pred             HHHHHHHHHHHhcC--CCCEEEEECCCcCHHH
Confidence            74  3343444333  43233  345666543

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=94.31  E-value=0.03  Score=54.50  Aligned_cols=63  Identities=17%  Similarity=0.134  Sum_probs=47.1

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF  111 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~  111 (340)
                      .+|.|+|. |++|+.+++.+..+|++++ ..||... ..-.|. .+.+++++..  ..|++++++|...
T Consensus       117 ~tvGIIGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~-~~~~g~-~~~~l~ell~--~aDvV~l~~Plt~  179 (380)
T 2o4c_A          117 RTYGVVGA-GQVGGRLVEVLRGLGWKVL-VCDPPRQ-AREPDG-EFVSLERLLA--EADVISLHTPLNR  179 (380)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECHHHH-HHSTTS-CCCCHHHHHH--HCSEEEECCCCCS
T ss_pred             CEEEEEeC-CHHHHHHHHHHHHCCCEEE-EEcCChh-hhccCc-ccCCHHHHHH--hCCEEEEeccCcc
Confidence            35677798 9999999999999999866 6776531 111233 4678999886  4899999998644

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=94.24  E-value=0.076  Score=50.69  Aligned_cols=91  Identities=16%  Similarity=0.067  Sum_probs=62.5

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCc--------e-----------------ecC--ccccc--CH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT--------E-----------------HLG--LPVFN--TV   91 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~--------~-----------------i~G--~p~y~--sl   91 (340)
                      +++|.|+|+ |+.|+.+.|.+.++ .+++++.-+....+.        +                 +.|  ++++.  +.
T Consensus         1 ~ikVgI~G~-G~iG~~l~R~l~~~~~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp   79 (330)
T 1gad_O            1 TIKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP   79 (330)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             CeEEEEECc-CHHHHHHHHHHHcCCCeEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcCCh
Confidence            368889996 99999999998876 567775433211100        0                 011  11343  45


Q ss_pred             HHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCC
Q 019500           92 AEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGI  134 (340)
Q Consensus        92 ~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf  134 (340)
                      +++|- ..++|+++.++|.....+.+...++.|+|.+ ++|+.|
T Consensus        80 ~~i~w~~~~vDvVf~atg~~~s~e~a~~~l~~GakvV-dlSa~~  122 (330)
T 1gad_O           80 ANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKV-VMTGPS  122 (330)
T ss_dssp             GGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEE-EESSCC
T ss_pred             hhCccccccCCEEEECCCccccHHHHHHHHHCCCEEE-EECCCC
Confidence            66641 1259999999999999999999999999985 478777

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=94.22  E-value=0.18  Score=46.31  Aligned_cols=89  Identities=12%  Similarity=0.087  Sum_probs=55.9

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ceec-Cccc-------ccCHHHhhccCCCcEEEEecCh-----
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEHL-GLPV-------FNTVAEAKAETKANASAIYVPP-----  109 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i~-G~p~-------y~sl~dip~~~~vDlavi~vp~-----  109 (340)
                      +|+|.|++|.+|+.+++.|.+.|++++......... +.+. ++..       ..++.++.++.++|++|-+...     
T Consensus         3 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~~~~~~~   82 (330)
T 2c20_A            3 SILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAADSLVGV   82 (330)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCTTSEEEECCTTCHHHHHHHHHHSCEEEEEECCCCCCHHH
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchhhcCCCcEEEECCCCCHHHHHHHHhhcCCCEEEECCcccCccc
Confidence            688899999999999999999999877443322100 1111 2221       2234454442358998876532     


Q ss_pred             -------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          110 -------------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       110 -------------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                                   .....+++.|.+.|++.+|.+++
T Consensus        83 ~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss  118 (330)
T 2c20_A           83 SMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSST  118 (330)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             cccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCC
Confidence                         12345677777889988776665

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=94.20  E-value=0.11  Score=47.53  Aligned_cols=85  Identities=14%  Similarity=0.143  Sum_probs=56.6

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChh------------
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP------------  110 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~------------  110 (340)
                      .+|+|.|++|.+|+.+++.|.+.|++++. +..+.. .+   +.-..++.++.++.++|++|-+....            
T Consensus         4 ~~ilVtGatG~iG~~l~~~L~~~g~~v~~-~~r~~~-~D---~~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~   78 (321)
T 1e6u_A            4 QRVFIAGHRGMVGSAIRRQLEQRGDVELV-LRTRDE-LN---LLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPAD   78 (321)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEE-CCCTTT-CC---TTCHHHHHHHHHHHCCSEEEECCCCCCCHHHHHHCHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEE-EecCcc-CC---ccCHHHHHHHHHhcCCCEEEEcCeecCCcchhhhCHHH
Confidence            46889999999999999999999998764 433221 12   22234455555422489998765321            


Q ss_pred             -------hHHHHHHHHHHcCCcEEEEecC
Q 019500          111 -------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       111 -------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                             ....+++.|.+.+++.+|.+++
T Consensus        79 ~~~~n~~~~~~l~~~~~~~~~~~~v~~SS  107 (321)
T 1e6u_A           79 FIYQNMMIESNIIHAAHQNDVNKLLFLGS  107 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence                   2345677888889988776665

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=94.16  E-value=0.054  Score=51.20  Aligned_cols=31  Identities=29%  Similarity=0.508  Sum_probs=26.7

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEee
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGV   73 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~V   73 (340)
                      .+|+|.|++|.+|+.+++.|.+.|++++...
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~   59 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLI   59 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEe
Confidence            4688999999999999999999999877443

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=94.13  E-value=0.22  Score=45.63  Aligned_cols=85  Identities=14%  Similarity=0.112  Sum_probs=57.3

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce------ecCcccc-------cCHHHhhccCCCcEEEEecCh-
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE------HLGLPVF-------NTVAEAKAETKANASAIYVPP-  109 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~------i~G~p~y-------~sl~dip~~~~vDlavi~vp~-  109 (340)
                      +|+|.|++|..|+.+++.|.+.|++++..+.......+      -.|+.++       .++.++.+  ++|.++.+.+. 
T Consensus        13 ~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~--~~d~vi~~a~~~   90 (318)
T 2r6j_A           13 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMK--KVDVVISALAFP   90 (318)
T ss_dssp             CEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCSEEEECCCGG
T ss_pred             eEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHc--CCCEEEECCchh
Confidence            47888999999999999999999987644332110011      1243332       23445554  59999988864 


Q ss_pred             --hhHHHHHHHHHHcC-CcEEEEec
Q 019500          110 --PFAAAAILEAMEAE-LDLVVCIT  131 (340)
Q Consensus       110 --~~v~~~v~ea~~~G-vk~vvi~t  131 (340)
                        .....+++.|.+.| ++.+| ++
T Consensus        91 ~~~~~~~l~~aa~~~g~v~~~v-~S  114 (318)
T 2r6j_A           91 QILDQFKILEAIKVAGNIKRFL-PS  114 (318)
T ss_dssp             GSTTHHHHHHHHHHHCCCCEEE-CS
T ss_pred             hhHHHHHHHHHHHhcCCCCEEE-ee
Confidence              34667888888888 99865 44

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=94.12  E-value=0.092  Score=50.15  Aligned_cols=90  Identities=12%  Similarity=-0.054  Sum_probs=63.0

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCC-------------CCCC----------ce--ecC--ccccc--CHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP-------------KKGG----------TE--HLG--LPVFN--TVAE   93 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP-------------~~~g----------~~--i~G--~p~y~--sl~d   93 (340)
                      ++|.|+|+ |+.|+.+.+.+.+..+++++.-++             +..|          +.  +.|  ++++.  +.++
T Consensus         1 ikVgInG~-G~IGr~vlr~l~~~~~evvaind~~~~~~~a~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~~   79 (331)
T 2g82_O            1 MKVGINGF-GRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKE   79 (331)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGG
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCEEEEEecCCCHHHHhHhhhccccCCCCCceEEEcCCEEEECCEEEEEEecCChhh
Confidence            46888899 999999999887778887743332             1111          11  123  34552  5666


Q ss_pred             hhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCC
Q 019500           94 AKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEG  133 (340)
Q Consensus        94 ip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~G  133 (340)
                      ++- +.++|+++.++|.....+.....++.|+|.+||-.++
T Consensus        80 l~w~~~gvDiV~estG~~~s~e~a~~~l~aGakkvVIsaps  120 (331)
T 2g82_O           80 IPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPA  120 (331)
T ss_dssp             SCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC
T ss_pred             CcccccCCCEEEECCCchhhHHHHHHHHHCCCCEEEECCCC
Confidence            652 1258999999999999999999999999987754443

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=94.10  E-value=0.064  Score=54.26  Aligned_cols=71  Identities=20%  Similarity=0.359  Sum_probs=52.4

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc--eecCcccccCHHHhhccCCCcEEEEecChh-hHHHHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAILE  118 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~--~i~G~p~y~sl~dip~~~~vDlavi~vp~~-~v~~~v~e  118 (340)
                      .+|.|+|. |++|+.+++.+..+|++++ ..||....+  .-.|+... +++++..  ..|++++++|.. ....++.+
T Consensus       143 ~~vgIIG~-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~a~~~g~~~~-~l~e~~~--~aDvV~l~~P~~~~t~~~i~~  216 (529)
T 1ygy_A          143 KTVGVVGL-GRIGQLVAQRIAAFGAYVV-AYDPYVSPARAAQLGIELL-SLDDLLA--RADFISVHLPKTPETAGLIDK  216 (529)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTTCEEE-EECTTSCHHHHHHHTCEEC-CHHHHHH--HCSEEEECCCCSTTTTTCBCH
T ss_pred             CEEEEEee-CHHHHHHHHHHHhCCCEEE-EECCCCChhHHHhcCcEEc-CHHHHHh--cCCEEEECCCCchHHHHHhCH
Confidence            35667799 9999999999999999866 678764211  12355544 8888876  489999999987 66666654

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=94.05  E-value=0.27  Score=42.01  Aligned_cols=88  Identities=19%  Similarity=0.178  Sum_probs=57.1

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCC--eEEEeeCCCCCCceecCcccc-cCHHHhh---ccCCCcEEEEecChh------
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTEHLGLPVF-NTVAEAK---AETKANASAIYVPPP------  110 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~--~vv~~VnP~~~g~~i~G~p~y-~sl~dip---~~~~vDlavi~vp~~------  110 (340)
                      .+|+|.|++|..|+.+++.|.+.|+  +++ .+..+.. ....++..+ -++.+..   +.. +|++|-+....      
T Consensus         6 ~~vlVtGatG~iG~~l~~~l~~~g~~~~V~-~~~r~~~-~~~~~~~~~~~D~~~~~~~~~~~-~d~vi~~a~~~~~~~~~   82 (215)
T 2a35_A            6 KRVLLAGATGLTGEHLLDRILSEPTLAKVI-APARKAL-AEHPRLDNPVGPLAELLPQLDGS-IDTAFCCLGTTIKEAGS   82 (215)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEE-CCBSSCC-CCCTTEECCBSCHHHHGGGCCSC-CSEEEECCCCCHHHHSS
T ss_pred             ceEEEECCCcHHHHHHHHHHHhCCCCCeEE-EEeCCCc-ccCCCceEEeccccCHHHHHHhh-hcEEEECeeeccccCCC
Confidence            4688899999999999999999987  766 4443321 112233322 2554432   222 79998876432      


Q ss_pred             ----------hHHHHHHHHHHcCCcEEEEecCC
Q 019500          111 ----------FAAAAILEAMEAELDLVVCITEG  133 (340)
Q Consensus       111 ----------~v~~~v~ea~~~Gvk~vvi~t~G  133 (340)
                                ....+++.|.+.|++.+|.+++.
T Consensus        83 ~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~  115 (215)
T 2a35_A           83 EEAFRAVDFDLPLAVGKRALEMGARHYLVVSAL  115 (215)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             HHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCc
Confidence                      34557778888899887766663

>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}

Probab=94.04  E-value=0.057  Score=51.45  Aligned_cols=86  Identities=17%  Similarity=0.080  Sum_probs=57.0

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCe---EEEeeCCCCCCce--ecC--ccccc-CHHHhhccCCCcEEEEecChhhHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTK---MVGGVTPKKGGTE--HLG--LPVFN-TVAEAKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~---vv~~VnP~~~g~~--i~G--~p~y~-sl~dip~~~~vDlavi~vp~~~v~~~  115 (340)
                      +|.|+||+|..|+.+++.|.+.++.   ++..-..+..|+.  +.|  ++++. +.++.    ++|+++.|+|.....+.
T Consensus         2 kVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g~~l~~~g~~i~v~~~~~~~~----~~DvV~~a~g~~~s~~~   77 (331)
T 2yv3_A            2 RVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLAFRGEEIPVEPLPEGPL----PVDLVLASAGGGISRAK   77 (331)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSSCEEEETTEEEEEEECCSSCC----CCSEEEECSHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCCCEEEEcCceEEEEeCChhhc----CCCEEEECCCccchHHH
Confidence            5778899999999999998865443   3222232222222  222  22322 11121    48999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCCC
Q 019500          116 ILEAMEAELDLVVCITEGI  134 (340)
Q Consensus       116 v~ea~~~Gvk~vvi~t~Gf  134 (340)
                      +..+.+.|++. |..++-|
T Consensus        78 a~~~~~~G~~v-Id~s~~~   95 (331)
T 2yv3_A           78 ALVWAEGGALV-VDNSSAW   95 (331)
T ss_dssp             HHHHHHTTCEE-EECSSSS
T ss_pred             HHHHHHCCCEE-EECCCcc
Confidence            99999999974 5566665

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=94.00  E-value=0.17  Score=46.60  Aligned_cols=91  Identities=10%  Similarity=0.052  Sum_probs=57.5

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC-CCCCCc-----------ee----cCcccccCHHHhhccCCCcEEEE
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT-----------EH----LGLPVFNTVAEAKAETKANASAI  105 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn-P~~~g~-----------~i----~G~p~y~sl~dip~~~~vDlavi  105 (340)
                      ..+|+|.|++|-+|+.+++.|.+.|++++.... +....+           .+    ..+.-..++.++.+..++|++|-
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   84 (341)
T 3enk_A            5 KGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAIH   84 (341)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEEE
T ss_pred             CcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEEE
Confidence            346889999999999999999999999774322 221100           00    11112223555554336899887


Q ss_pred             ecCh------------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          106 YVPP------------------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       106 ~vp~------------------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      +...                  .....+++.|.+.+++.+|.+++
T Consensus        85 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS  129 (341)
T 3enk_A           85 FAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSS  129 (341)
T ss_dssp             CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence            6531                  12345677888889988777765

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=93.97  E-value=0.16  Score=47.45  Aligned_cols=85  Identities=14%  Similarity=0.105  Sum_probs=57.7

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc-e--------ecCccc-------ccCHHHhhccCCCcEEEEec
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E--------HLGLPV-------FNTVAEAKAETKANASAIYV  107 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~-~--------i~G~p~-------y~sl~dip~~~~vDlavi~v  107 (340)
                      +|+|.|++|..|+.+++.|.+.|++++..+....... .        -.++.+       ..++.++.++.++|++|-+.
T Consensus        12 ~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~a   91 (346)
T 3i6i_A           12 RVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVSTV   91 (346)
T ss_dssp             CEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEECC
T ss_pred             eEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEECC
Confidence            5788899999999999999999998775544321000 0        012222       23455555433699999887


Q ss_pred             Ch---hhHHHHHHHHHHcC-CcEEE
Q 019500          108 PP---PFAAAAILEAMEAE-LDLVV  128 (340)
Q Consensus       108 p~---~~v~~~v~ea~~~G-vk~vv  128 (340)
                      ..   .....+++.|.+.| ++.++
T Consensus        92 ~~~n~~~~~~l~~aa~~~g~v~~~v  116 (346)
T 3i6i_A           92 GGESILDQIALVKAMKAVGTIKRFL  116 (346)
T ss_dssp             CGGGGGGHHHHHHHHHHHCCCSEEE
T ss_pred             chhhHHHHHHHHHHHHHcCCceEEe
Confidence            65   45567888888999 99865

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=93.82  E-value=0.27  Score=40.51  Aligned_cols=87  Identities=11%  Similarity=-0.019  Sum_probs=50.8

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC--cee-----cCccccc-------CHHHhhccCCCcEEEEecCh
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG--TEH-----LGLPVFN-------TVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g--~~i-----~G~p~y~-------sl~dip~~~~vDlavi~vp~  109 (340)
                      +|+|+|+ |+.|+.+++.|.+.|++++ .++++...  +.+     .|++++.       .+.+..- .+.|+++++++.
T Consensus         5 ~vlI~G~-G~vG~~la~~L~~~g~~V~-vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i-~~ad~vi~~~~~   81 (153)
T 1id1_A            5 HFIVCGH-SILAINTILQLNQRGQNVT-VISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGI-DRCRAILALSDN   81 (153)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCEE-EEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTT-TTCSEEEECSSC
T ss_pred             cEEEECC-CHHHHHHHHHHHHCCCCEE-EEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcCh-hhCCEEEEecCC
Confidence            4677798 9999999999999999866 55553100  011     1333321       2333311 258999999987


Q ss_pred             hhHHHHHHH-HHHc-CCcEEEEecCC
Q 019500          110 PFAAAAILE-AMEA-ELDLVVCITEG  133 (340)
Q Consensus       110 ~~v~~~v~e-a~~~-Gvk~vvi~t~G  133 (340)
                      +..-..+.. +-+. +...++....+
T Consensus        82 d~~n~~~~~~a~~~~~~~~ii~~~~~  107 (153)
T 1id1_A           82 DADNAFVVLSAKDMSSDVKTVLAVSD  107 (153)
T ss_dssp             HHHHHHHHHHHHHHTSSSCEEEECSS
T ss_pred             hHHHHHHHHHHHHHCCCCEEEEEECC
Confidence            655444433 3344 55554544433

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=93.82  E-value=0.069  Score=51.21  Aligned_cols=87  Identities=14%  Similarity=0.176  Sum_probs=57.6

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCc----eecCccccc--------------------CHHHhhcc
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT----EHLGLPVFN--------------------TVAEAKAE   97 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~----~i~G~p~y~--------------------sl~dip~~   97 (340)
                      ++|.|+|+ |++|+.+++.+.+. ++++++..+....-.    ...|..+|.                    +..+++. 
T Consensus         3 ikVgI~G~-G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~-   80 (343)
T 2yyy_A            3 AKVLINGY-GSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIE-   80 (343)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGG-
T ss_pred             eEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhcc-
Confidence            68889999 99999999998876 678775443221000    011223322                    2233333 


Q ss_pred             CCCcEEEEecChhhHHHHHH-HHHHcCCcEEEEecCCC
Q 019500           98 TKANASAIYVPPPFAAAAIL-EAMEAELDLVVCITEGI  134 (340)
Q Consensus        98 ~~vDlavi~vp~~~v~~~v~-ea~~~Gvk~vvi~t~Gf  134 (340)
                       ++|+++.++|.....+..+ .++++|.+ ++ .+.+.
T Consensus        81 -~vDiV~eatg~~~s~~~a~~~~l~aG~~-VI-~sap~  115 (343)
T 2yyy_A           81 -DADIVVDGAPKKIGKQNLENIYKPHKVK-AI-LQGGE  115 (343)
T ss_dssp             -GCSEEEECCCTTHHHHHHHHTTTTTTCE-EE-ECTTS
T ss_pred             -CCCEEEECCCccccHHHHHHHHHHCCCE-EE-ECCCc
Confidence             5899999999998888885 88999965 34 46554

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.79  E-value=0.058  Score=44.14  Aligned_cols=74  Identities=16%  Similarity=0.240  Sum_probs=47.6

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee-----cCcccc-cC------HHHhhccCCCcEEEEecChhh
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-----LGLPVF-NT------VAEAKAETKANASAIYVPPPF  111 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i-----~G~p~y-~s------l~dip~~~~vDlavi~vp~~~  111 (340)
                      +|+|+|+ |++|+.+++.|.+.|++++ .++.+.  +.+     .|++++ .+      +.+..- .+.|++++++|.+.
T Consensus         9 ~viIiG~-G~~G~~la~~L~~~g~~v~-vid~~~--~~~~~~~~~g~~~i~gd~~~~~~l~~a~i-~~ad~vi~~~~~~~   83 (140)
T 3fwz_A            9 HALLVGY-GRVGSLLGEKLLASDIPLV-VIETSR--TRVDELRERGVRAVLGNAANEEIMQLAHL-ECAKWLILTIPNGY   83 (140)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCEE-EEESCH--HHHHHHHHTTCEEEESCTTSHHHHHHTTG-GGCSEEEECCSCHH
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCCEE-EEECCH--HHHHHHHHcCCCEEECCCCCHHHHHhcCc-ccCCEEEEECCChH
Confidence            4677799 9999999999999999866 565543  211     355433 22      232211 25899999999765


Q ss_pred             HH-HHHHHHHHc
Q 019500          112 AA-AAILEAMEA  122 (340)
Q Consensus       112 v~-~~v~ea~~~  122 (340)
                      .- .++..+.+.
T Consensus        84 ~n~~~~~~a~~~   95 (140)
T 3fwz_A           84 EAGEIVASARAK   95 (140)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            43 344444444

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=93.77  E-value=0.42  Score=47.12  Aligned_cols=105  Identities=13%  Similarity=0.146  Sum_probs=65.1

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee-----cCccccc-CHHHhhc-------------cCCCcEE
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-----LGLPVFN-TVAEAKA-------------ETKANAS  103 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i-----~G~p~y~-sl~dip~-------------~~~vDla  103 (340)
                      .+.-|+|. |.+|...+.+|.+.|++++ ++|.+.  +.+     ...|.|. .++++..             ..+.|++
T Consensus        12 ~~~~ViGl-GyvGlp~A~~La~~G~~V~-~~D~~~--~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvv   87 (431)
T 3ojo_A           12 SKLTVVGL-GYIGLPTSIMFAKHGVDVL-GVDINQ--QTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVF   87 (431)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTCEEE-EECSCH--HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEE
T ss_pred             CccEEEee-CHHHHHHHHHHHHCCCEEE-EEECCH--HHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEE
Confidence            35566799 9999999999999999966 555443  221     2345553 4554310             1258999


Q ss_pred             EEecChhh------------HHHHHHHHHHc-CCcEEEEecCCCChhhHHHHHHHHhccCC
Q 019500          104 AIYVPPPF------------AAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSK  151 (340)
Q Consensus       104 vi~vp~~~------------v~~~v~ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~g  151 (340)
                      ++++|...            +..+.+...+. .-..+||..+..+....+++.+.+.++.|
T Consensus        88 ii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g  148 (431)
T 3ojo_A           88 IIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLG  148 (431)
T ss_dssp             EECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTT
T ss_pred             EEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcC
Confidence            99998865            45555544442 23456777888876655555443223344

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=93.75  E-value=0.049  Score=50.12  Aligned_cols=68  Identities=16%  Similarity=0.105  Sum_probs=50.1

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCcccccCHHHhhccCCCcEEEEecChhhHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAA  113 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~---i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~  113 (340)
                      ..+|+|+|+ |.+|+.+++.|.+.|++ +..+|++... ++   -.|+.+++++.++.+  +.|++|.++|+...+
T Consensus       129 ~~~v~iiGa-G~~g~aia~~L~~~g~~-V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~--~aDiVi~atp~~~~~  200 (275)
T 2hk9_A          129 EKSILVLGA-GGASRAVIYALVKEGAK-VFLWNRTKEKAIKLAQKFPLEVVNSPEEVID--KVQVIVNTTSVGLKD  200 (275)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHHTCE-EEEECSSHHHHHHHTTTSCEEECSCGGGTGG--GCSEEEECSSTTSST
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHcCCE-EEEEECCHHHHHHHHHHcCCeeehhHHhhhc--CCCEEEEeCCCCCCC
Confidence            446788898 99999999999999985 4478876410 11   235666767777765  489999999988643

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=93.74  E-value=0.12  Score=50.05  Aligned_cols=105  Identities=11%  Similarity=0.109  Sum_probs=64.1

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc--eecCcccccCHHHhhccCCCcEEEEecChh-hHHHHH-H
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAI-L  117 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~--~i~G~p~y~sl~dip~~~~vDlavi~vp~~-~v~~~v-~  117 (340)
                      ..+|.|+|. |++|+.+++.+..+|++++ ..||....+  .-.|+. +.+++++..  ..|++++++|.. .+..++ +
T Consensus       176 gktvGIIGl-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~g~~-~~~l~ell~--~aDvV~l~~Plt~~T~~li~~  250 (365)
T 4hy3_A          176 GSEIGIVGF-GDLGKALRRVLSGFRARIR-VFDPWLPRSMLEENGVE-PASLEDVLT--KSDFIFVVAAVTSENKRFLGA  250 (365)
T ss_dssp             SSEEEEECC-SHHHHHHHHHHTTSCCEEE-EECSSSCHHHHHHTTCE-ECCHHHHHH--SCSEEEECSCSSCC---CCCH
T ss_pred             CCEEEEecC-CcccHHHHHhhhhCCCEEE-EECCCCCHHHHhhcCee-eCCHHHHHh--cCCEEEEcCcCCHHHHhhcCH
Confidence            335677799 9999999999999999866 677764111  124554 568999987  589999999964 233333 2


Q ss_pred             HHHH-cCCcEE-EEecCCCChhhHHHHHHHHhccCCcE
Q 019500          118 EAME-AELDLV-VCITEGIPQHDMVRVKAALNNQSKTR  153 (340)
Q Consensus       118 ea~~-~Gvk~v-vi~t~Gf~e~~~~~l~~~aar~~gir  153 (340)
                      +.++ .+-..+ |..+.| +--+.+.|.+++ ++..+.
T Consensus       251 ~~l~~mk~gailIN~aRG-~~vde~aL~~aL-~~g~i~  286 (365)
T 4hy3_A          251 EAFSSMRRGAAFILLSRA-DVVDFDALMAAV-SSGHIV  286 (365)
T ss_dssp             HHHHTSCTTCEEEECSCG-GGSCHHHHHHHH-HTTSSE
T ss_pred             HHHhcCCCCcEEEECcCC-chhCHHHHHHHH-HcCCce
Confidence            2222 233333 444444 223445566655 455565

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=93.70  E-value=0.12  Score=48.76  Aligned_cols=87  Identities=16%  Similarity=0.165  Sum_probs=58.4

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC-------CCcee--------cCcccccCHHHhhccCCCcEEEEec
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK-------GGTEH--------LGLPVFNTVAEAKAETKANASAIYV  107 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~-------~g~~i--------~G~p~y~sl~dip~~~~vDlavi~v  107 (340)
                      .+|.|+|+ |.+|...+..|.+.|+++. .+++..       .|-.+        ..+++..+.+++.   +.|++++++
T Consensus         4 mkI~IiGa-G~~G~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~D~Vilav   78 (335)
T 3ghy_A            4 TRICIVGA-GAVGGYLGARLALAGEAIN-VLARGATLQALQTAGLRLTEDGATHTLPVRATHDAAALG---EQDVVIVAV   78 (335)
T ss_dssp             CCEEEESC-CHHHHHHHHHHHHTTCCEE-EECCHHHHHHHHHTCEEEEETTEEEEECCEEESCHHHHC---CCSEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCCEEE-EEEChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHHcC---CCCEEEEeC
Confidence            35677799 9999999999999898755 555421       00111        1123456777763   489999999


Q ss_pred             ChhhHHHHHHHHHHc-C-CcEEEEecCCC
Q 019500          108 PPPFAAAAILEAMEA-E-LDLVVCITEGI  134 (340)
Q Consensus       108 p~~~v~~~v~ea~~~-G-vk~vvi~t~Gf  134 (340)
                      |+..+.+++++.... + -..++.++.|+
T Consensus        79 k~~~~~~~~~~l~~~l~~~~~iv~~~nGi  107 (335)
T 3ghy_A           79 KAPALESVAAGIAPLIGPGTCVVVAMNGV  107 (335)
T ss_dssp             CHHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred             CchhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            999888887765432 1 13456678896

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=93.68  E-value=0.25  Score=45.96  Aligned_cols=90  Identities=13%  Similarity=0.091  Sum_probs=57.5

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee------------cCccc-------ccCHHHhhccCCC
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH------------LGLPV-------FNTVAEAKAETKA  100 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i------------~G~p~-------y~sl~dip~~~~v  100 (340)
                      +..+|+|.|++|.+|+.+++.|.+.|++++......... +..            .++..       ..++.++.+  ++
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~  103 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA--GV  103 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT--TC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhc--CC
Confidence            345788999999999999999999999877443311100 000            12222       223555554  59


Q ss_pred             cEEEEecChh------------------hHHHHHHHHHHcCCcEEEEecC
Q 019500          101 NASAIYVPPP------------------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       101 Dlavi~vp~~------------------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      |++|-+....                  ....+++.|.+.|++.+|.+++
T Consensus       104 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS  153 (352)
T 1sb8_A          104 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAAS  153 (352)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence            9999876421                  1245677788889988776665

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=93.65  E-value=0.063  Score=48.45  Aligned_cols=83  Identities=16%  Similarity=0.102  Sum_probs=55.2

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChh------------
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP------------  110 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~------------  110 (340)
                      ++|+|.|++|.+|+.+++.|.+.|++++ .++...  .++   .-..++.++.+..++|++|-+....            
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~~V~-~~~r~~--~D~---~d~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~   79 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEYDIY-PFDKKL--LDI---TNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLA   79 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTEEEE-EECTTT--SCT---TCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHH
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCEEE-Eecccc--cCC---CCHHHHHHHHHhcCCCEEEECCcccChHHHhcCHHHH
Confidence            3788999999999999999999899877 444332  122   2233455555422589998764321            


Q ss_pred             ------hHHHHHHHHHHcCCcEEEEecC
Q 019500          111 ------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       111 ------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                            ....+++.|.+.|++ +|.+++
T Consensus        80 ~~~n~~~~~~l~~~~~~~~~~-~v~~SS  106 (287)
T 3sc6_A           80 YVINAIGARNVAVASQLVGAK-LVYIST  106 (287)
T ss_dssp             HHHHTHHHHHHHHHHHHHTCE-EEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHcCCe-EEEEch
Confidence                  134578888888997 454554

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=93.58  E-value=0.059  Score=51.28  Aligned_cols=63  Identities=22%  Similarity=0.234  Sum_probs=47.1

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce---ecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~---i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      ..+|.|+|. |++|+.+++.+..+|++++ ..||.....+   -.|+. |.+++++..  ..|++++++|.
T Consensus       145 g~tvGIIG~-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~-~~~l~ell~--~aDvV~l~~P~  210 (330)
T 4e5n_A          145 NATVGFLGM-GAIGLAMADRLQGWGATLQ-YHEAKALDTQTEQRLGLR-QVACSELFA--SSDFILLALPL  210 (330)
T ss_dssp             TCEEEEECC-SHHHHHHHHHTTTSCCEEE-EECSSCCCHHHHHHHTEE-ECCHHHHHH--HCSEEEECCCC
T ss_pred             CCEEEEEee-CHHHHHHHHHHHHCCCEEE-EECCCCCcHhHHHhcCce-eCCHHHHHh--hCCEEEEcCCC
Confidence            345677799 9999999999999999866 6777541121   23554 458999887  48999999994

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=93.50  E-value=0.22  Score=46.00  Aligned_cols=90  Identities=14%  Similarity=0.086  Sum_probs=56.5

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC-CCCCC---ceecCcccc-------cCHHHhhccCCCcEEEEecCh--
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGG---TEHLGLPVF-------NTVAEAKAETKANASAIYVPP--  109 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn-P~~~g---~~i~G~p~y-------~sl~dip~~~~vDlavi~vp~--  109 (340)
                      .+|+|.|++|.+|+.+++.|.+.|++++.... +....   .++.++..+       .++.++.++.++|++|-+...  
T Consensus        21 ~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~~~~  100 (330)
T 2pzm_A           21 MRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAAYK  100 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCCCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEECCccCC
Confidence            36888999999999999999999999774443 21100   111222222       234444431148999887532  


Q ss_pred             -------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          110 -------------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       110 -------------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                                   .....+++.|.+.|++.+|.+++
T Consensus       101 ~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~SS  136 (330)
T 2pzm_A          101 DPDDWAEDAATNVQGSINVAKAASKAGVKRLLNFQT  136 (330)
T ss_dssp             CTTCHHHHHHHHTHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred             CccccChhHHHHHHHHHHHHHHHHHcCCCEEEEecC
Confidence                         12356777888889888776665

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=93.46  E-value=0.12  Score=46.39  Aligned_cols=30  Identities=13%  Similarity=0.145  Sum_probs=25.4

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeC
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT   74 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~Vn   74 (340)
                      +|+|.|++|.+|+.+++.|.+.|++++ .++
T Consensus         4 ~ilVtGatG~iG~~l~~~L~~~g~~V~-~~~   33 (267)
T 3ay3_A            4 RLLVTGAAGGVGSAIRPHLGTLAHEVR-LSD   33 (267)
T ss_dssp             EEEEESTTSHHHHHHGGGGGGTEEEEE-ECC
T ss_pred             eEEEECCCCHHHHHHHHHHHhCCCEEE-EEe
Confidence            578889999999999999998898866 444

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=93.34  E-value=0.22  Score=49.61  Aligned_cols=88  Identities=15%  Similarity=0.074  Sum_probs=53.5

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChh-----------
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP-----------  110 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~-----------  110 (340)
                      ..+|+|.|++|.+|+.+++.|.+.|++++..+......+.+.+-.. ..+.+..+  ++|++|-+....           
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~~d~~-~~~~~~l~--~~D~Vih~A~~~~~~~~~~~~~~  223 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWDPL-NPASDLLD--GADVLVHLAGEPIFGRFNDSHKE  223 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEECCTT-SCCTTTTT--TCSEEEECCCC-----CCGGGHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccceeeccc-chhHHhcC--CCCEEEECCCCccccccchhHHH
Confidence            5678999999999999999999999997755432221122222111 22333333  589998765321           


Q ss_pred             --------hHHHHHHH-HHHcCCcEEEEecC
Q 019500          111 --------FAAAAILE-AMEAELDLVVCITE  132 (340)
Q Consensus       111 --------~v~~~v~e-a~~~Gvk~vvi~t~  132 (340)
                              ....+++. |.+.+++.+|.+++
T Consensus       224 ~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS  254 (516)
T 3oh8_A          224 AIRESRVLPTKFLAELVAESTQCTTMISASA  254 (516)
T ss_dssp             HHHHHTHHHHHHHHHHHHHCSSCCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence                    13445565 34457877665554

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=93.31  E-value=0.08  Score=49.66  Aligned_cols=68  Identities=21%  Similarity=0.092  Sum_probs=49.9

Q ss_pred             CcCCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCC-ce---ecC--cccccCHHHhhccCCCcEEEEecCh
Q 019500           39 VDKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-TE---HLG--LPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        39 ~p~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g-~~---i~G--~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      .++..+|.|+|+ |.+|+.+++++.+. |++.+...|++... ++   -.+  +..+.+++++.+  ..|+++.++|.
T Consensus       132 ~~~~~~igiIG~-G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~--~aDiVi~atp~  206 (312)
T 2i99_A          132 PPSSEVLCILGA-GVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVA--GADVIITVTLA  206 (312)
T ss_dssp             CTTCCEEEEECC-SHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHT--TCSEEEECCCC
T ss_pred             CCCCcEEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHh--cCCEEEEEeCC
Confidence            345667888899 99999999998875 88555577776410 11   124  667889998876  58999999995

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=93.30  E-value=0.13  Score=46.53  Aligned_cols=84  Identities=13%  Similarity=0.079  Sum_probs=55.4

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChh-----------
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP-----------  110 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~-----------  110 (340)
                      ..+|+|.|++|.+|+.+++.|.+.|++++ .++.+.  .++   .-..++.++.+..++|++|-+....           
T Consensus        12 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~-~~~r~~--~Dl---~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~   85 (292)
T 1vl0_A           12 HMKILITGANGQLGREIQKQLKGKNVEVI-PTDVQD--LDI---TNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDL   85 (292)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSEEEE-EECTTT--CCT---TCHHHHHHHHHHHCCSEEEECCCCCCHHHHHHCHHH
T ss_pred             cceEEEECCCChHHHHHHHHHHhCCCeEE-eccCcc--CCC---CCHHHHHHHHHhcCCCEEEECCccCCHHHHhcCHHH
Confidence            56788999999999999999999998877 444332  122   2233455554422489998775321           


Q ss_pred             -------hHHHHHHHHHHcCCcEEEEecC
Q 019500          111 -------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       111 -------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                             ....+++.|.+.|+ .+|.+++
T Consensus        86 ~~~~nv~~~~~l~~a~~~~~~-~iv~~SS  113 (292)
T 1vl0_A           86 AYKINAIGPKNLAAAAYSVGA-EIVQIST  113 (292)
T ss_dssp             HHHHHTHHHHHHHHHHHHHTC-EEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHcCC-eEEEech
Confidence                   13567778888888 4455554

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=93.27  E-value=0.4  Score=47.94  Aligned_cols=101  Identities=13%  Similarity=0.131  Sum_probs=59.0

Q ss_pred             cccccCc--CCeEEEEeCCCCCcchHHHHHHHHc-CC-eEE-EeeCCCCCCcee--------------------------
Q 019500           34 APAVFVD--KNTRVICQGITGKNGTFHTEQAIEY-GT-KMV-GGVTPKKGGTEH--------------------------   82 (340)
Q Consensus        34 l~~lf~p--~~iaViVvGasgk~G~~v~~~l~~~-G~-~vv-~~VnP~~~g~~i--------------------------   82 (340)
                      |...+..  +..+|.|+|+ |.+|..++..|.+. |+ +++ +-+|+.+....+                          
T Consensus         8 ~~~~~~~~~~~mkIaVIGl-G~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~   86 (478)
T 3g79_A            8 LEKLLKERGPIKKIGVLGM-GYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVK   86 (478)
T ss_dssp             HHHHHHHHCSCCEEEEECC-STTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHH
T ss_pred             HHHHHhhcCCCCEEEEECc-CHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcc
Confidence            5555533  2457888899 99999999999999 99 855 234444000011                          


Q ss_pred             cC-cccccCHHHhhccCCCcEEEEecChhh------------HHHHHHHHHHc-CCcEEEEecCCCChhh
Q 019500           83 LG-LPVFNTVAEAKAETKANASAIYVPPPF------------AAAAILEAMEA-ELDLVVCITEGIPQHD  138 (340)
Q Consensus        83 ~G-~p~y~sl~dip~~~~vDlavi~vp~~~------------v~~~v~ea~~~-Gvk~vvi~t~Gf~e~~  138 (340)
                      .| +.+-.+ .+...  +.|++++++|...            +..+.+...+. .-..+||..+.++...
T Consensus        87 ~g~l~~ttd-~ea~~--~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgt  153 (478)
T 3g79_A           87 AGKFECTPD-FSRIS--ELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGT  153 (478)
T ss_dssp             TTCEEEESC-GGGGG--GCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTT
T ss_pred             cCCeEEeCc-HHHHh--cCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHH
Confidence            11 122223 23333  4899999998753            44455555442 2233566777776543

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=93.26  E-value=0.31  Score=45.12  Aligned_cols=92  Identities=18%  Similarity=0.200  Sum_probs=56.7

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc-ee---cCcccc-------cCHHHhhccCCCcEEEEecCh
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-EH---LGLPVF-------NTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~-~i---~G~p~y-------~sl~dip~~~~vDlavi~vp~  109 (340)
                      +..+|+|.|++|.+|+.+++.|.+.|++++.......... .+   .++..+       .++.++.+..++|++|-+...
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~~   99 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAAS   99 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEECcee
Confidence            3457889999999999999999999998774433211001 11   122222       234444431238998876532


Q ss_pred             ---------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          110 ---------------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       110 ---------------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                                     .....+++.|.+.|++.+|.+++
T Consensus       100 ~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~SS  137 (333)
T 2q1w_A          100 YKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQT  137 (333)
T ss_dssp             CSCTTCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             cCCCccCChHHHHHHHHHHHHHHHHHHhCCCEEEEECc
Confidence                           12456777888888877776664

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=93.19  E-value=0.36  Score=43.74  Aligned_cols=88  Identities=8%  Similarity=-0.059  Sum_probs=55.2

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC----CCceecC----cccccCHHHhhccCCCcEEEEecCh----
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK----GGTEHLG----LPVFNTVAEAKAETKANASAIYVPP----  109 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~----~g~~i~G----~p~y~sl~dip~~~~vDlavi~vp~----  109 (340)
                      +.+|+|.|++|.+|+.+++.|.+.|++++.......    ....+..    -.+---..|+.   ++|+++-+...    
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~---~~d~vi~~a~~~~~~   83 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS---DVRLVYHLASHKSVP   83 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT---TEEEEEECCCCCCHH
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc---cCCEEEECCccCChH
Confidence            456889999999999999999999998774433211    0011111    01111233443   47888866532    


Q ss_pred             -------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          110 -------------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       110 -------------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                                   .....+++.|.+.|++.+|.+++
T Consensus        84 ~~~~~~~~~~~n~~~~~~ll~a~~~~~v~~~v~~SS  119 (321)
T 3vps_A           84 RSFKQPLDYLDNVDSGRHLLALCTSVGVPKVVVGST  119 (321)
T ss_dssp             HHTTSTTTTHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHHHHcCCCeEEEecC
Confidence                         12356888888999988776665

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=93.03  E-value=0.15  Score=45.83  Aligned_cols=87  Identities=16%  Similarity=0.200  Sum_probs=57.2

Q ss_pred             EEEEeCCCCCcchHHHHHHHHc--CCeEEEeeC-CCCCCcee--cCcccc-------cCHHHhhccCCCcEEEEecCh--
Q 019500           44 RVICQGITGKNGTFHTEQAIEY--GTKMVGGVT-PKKGGTEH--LGLPVF-------NTVAEAKAETKANASAIYVPP--  109 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~--G~~vv~~Vn-P~~~g~~i--~G~p~y-------~sl~dip~~~~vDlavi~vp~--  109 (340)
                      +|+|.|++|..|+.+++.|.+.  |++++.... +... .+.  .++..+       .++.++.+  ++|.++-+...  
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~-~~l~~~~~~~~~~D~~d~~~l~~~~~--~~d~vi~~a~~~~   78 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKA-STLADQGVEVRHGDYNQPESLQKAFA--GVSKLLFISGPHY   78 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTT-HHHHHTTCEEEECCTTCHHHHHHHTT--TCSEEEECCCCCS
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHH-hHHhhcCCeEEEeccCCHHHHHHHHh--cCCEEEEcCCCCc
Confidence            4778899999999999999987  888774433 2210 111  122222       23445544  58999987643  


Q ss_pred             ------hhHHHHHHHHHHcCCcEEEEecCC
Q 019500          110 ------PFAAAAILEAMEAELDLVVCITEG  133 (340)
Q Consensus       110 ------~~v~~~v~ea~~~Gvk~vvi~t~G  133 (340)
                            .....+++.|.+.|++.+|.+++.
T Consensus        79 ~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~  108 (287)
T 2jl1_A           79 DNTLLIVQHANVVKAARDAGVKHIAYTGYA  108 (287)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCSEEEEEEET
T ss_pred             CchHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence                  245667888888899887766653

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=93.00  E-value=0.15  Score=45.92  Aligned_cols=89  Identities=13%  Similarity=0.082  Sum_probs=55.5

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce--ecCcccc-cCHHHhhccCCCcEEEEecChh-----hHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--HLGLPVF-NTVAEAKAETKANASAIYVPPP-----FAA  113 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~--i~G~p~y-~sl~dip~~~~vDlavi~vp~~-----~v~  113 (340)
                      +.+|+|.|+ |.+|+.+++.|.+.|++++...........  -.++..+ -++.++. -.++|++|-+....     ...
T Consensus         5 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~-~~~~d~vi~~a~~~~~~~~~~~   82 (286)
T 3ius_A            5 TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS-LDGVTHLLISTAPDSGGDPVLA   82 (286)
T ss_dssp             CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC-CTTCCEEEECCCCBTTBCHHHH
T ss_pred             cCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc-cCCCCEEEECCCccccccHHHH
Confidence            357889998 999999999999999997744332210001  1233333 2444432 23689999877432     234


Q ss_pred             HHHHHHHH--cCCcEEEEecC
Q 019500          114 AAILEAME--AELDLVVCITE  132 (340)
Q Consensus       114 ~~v~ea~~--~Gvk~vvi~t~  132 (340)
                      .+++.|.+  .+++.+|.+++
T Consensus        83 ~l~~a~~~~~~~~~~~v~~Ss  103 (286)
T 3ius_A           83 ALGDQIAARAAQFRWVGYLST  103 (286)
T ss_dssp             HHHHHHHHTGGGCSEEEEEEE
T ss_pred             HHHHHHHhhcCCceEEEEeec
Confidence            56666666  68888776654

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=93.00  E-value=0.38  Score=44.01  Aligned_cols=90  Identities=19%  Similarity=0.138  Sum_probs=54.8

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC--------------CCce-e--cCcccccCHHHhhccCCCcEE
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK--------------GGTE-H--LGLPVFNTVAEAKAETKANAS  103 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~--------------~g~~-i--~G~p~y~sl~dip~~~~vDla  103 (340)
                      +..+|+|.|++|.+|+.+++.|.+.|++++.......              .+-+ +  ..+.-..++.++.+  ++|++
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~v   87 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK--GAAGV   87 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT--TCSEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHc--CCCEE
Confidence            3456888999999999999999999998774433110              0000 1  11222233444443  58999


Q ss_pred             EEecCh---------------hhHHHHHHHHHH-cCCcEEEEecC
Q 019500          104 AIYVPP---------------PFAAAAILEAME-AELDLVVCITE  132 (340)
Q Consensus       104 vi~vp~---------------~~v~~~v~ea~~-~Gvk~vvi~t~  132 (340)
                      |-+...               .....+++.|.+ .+++.+|.+++
T Consensus        88 ih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS  132 (342)
T 1y1p_A           88 AHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS  132 (342)
T ss_dssp             EECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred             EEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecc
Confidence            876532               123445666663 57888777766

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=92.99  E-value=0.18  Score=47.87  Aligned_cols=64  Identities=16%  Similarity=0.255  Sum_probs=47.1

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ceecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      ..+|.|+|. |++|+.+++.+..+|++++ ..|+.... ....+...+.+++++..  ..|++++++|.
T Consensus       140 g~tvGIIGl-G~IG~~vA~~l~~~G~~V~-~~dr~~~~~~~~~~~~~~~~l~ell~--~aDvV~l~lPl  204 (324)
T 3hg7_A          140 GRTLLILGT-GSIGQHIAHTGKHFGMKVL-GVSRSGRERAGFDQVYQLPALNKMLA--QADVIVSVLPA  204 (324)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCCCTTCSEEECGGGHHHHHH--TCSEEEECCCC
T ss_pred             cceEEEEEE-CHHHHHHHHHHHhCCCEEE-EEcCChHHhhhhhcccccCCHHHHHh--hCCEEEEeCCC
Confidence            345677799 9999999999999999966 56665310 12222334578999887  59999999994

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=92.99  E-value=0.52  Score=41.01  Aligned_cols=88  Identities=15%  Similarity=0.068  Sum_probs=56.7

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc--CCeEEEeeCCCCC-------C-cee-cCcccccCHHHhhccCCCcEEEEecCh-
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKG-------G-TEH-LGLPVFNTVAEAKAETKANASAIYVPP-  109 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~--G~~vv~~VnP~~~-------g-~~i-~G~p~y~sl~dip~~~~vDlavi~vp~-  109 (340)
                      ..+|+|.|++|.+|+.+++.|.+.  |++++.. ..+..       + .-+ ..+.-..++.++.+  ++|++|-+... 
T Consensus         4 ~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~vi~~a~~~   80 (253)
T 1xq6_A            4 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGL-VRSAQGKEKIGGEADVFIGDITDADSINPAFQ--GIDALVILTSAV   80 (253)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEE-ESCHHHHHHTTCCTTEEECCTTSHHHHHHHHT--TCSEEEECCCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEE-EcCCCchhhcCCCeeEEEecCCCHHHHHHHHc--CCCEEEEecccc
Confidence            346788999999999999999998  7887643 32210       0 001 11222234555555  58998876531 


Q ss_pred             ------------------------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          110 ------------------------------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       110 ------------------------------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                                                    .....+++.|.+.+++.+|.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS  133 (253)
T 1xq6_A           81 PKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGS  133 (253)
T ss_dssp             CEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred             ccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcC
Confidence                                          12466778888889988776665

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=92.95  E-value=0.22  Score=47.47  Aligned_cols=86  Identities=16%  Similarity=0.088  Sum_probs=59.5

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc---CCeEEEeeCC-----------------CCCCc------e--ecC--ccccc--C
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTP-----------------KKGGT------E--HLG--LPVFN--T   90 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~---G~~vv~~VnP-----------------~~~g~------~--i~G--~p~y~--s   90 (340)
                      ++|.|+|+ |+.|+.+.|.|.+.   .+++++.-+.                 +..++      .  +.|  ++++.  +
T Consensus         1 ~kVgI~G~-G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~d   79 (332)
T 1hdg_O            1 ARVAINGF-GRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPD   79 (332)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCC
Confidence            46888899 99999999988776   4777744322                 11000      1  123  34442  5


Q ss_pred             HHHhh-ccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 019500           91 VAEAK-AETKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (340)
Q Consensus        91 l~dip-~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi  129 (340)
                      .++++ .+.++|+++.++|.....+.+...++.|+|.+||
T Consensus        80 p~~l~w~~~~vDvV~~atg~~~s~e~a~~~l~aGakkvVI  119 (332)
T 1hdg_O           80 PSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVII  119 (332)
T ss_dssp             GGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE
T ss_pred             hHHCcccccCCCEEEECCccchhHHHHHHHHHcCCcEEEE
Confidence            55564 1115899999999999999999999999987654

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=92.88  E-value=0.34  Score=43.52  Aligned_cols=86  Identities=13%  Similarity=0.027  Sum_probs=54.0

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCe---EEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChh--------
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTK---MVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP--------  110 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~---vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~--------  110 (340)
                      +.+|+|.|++|.+|+.+++.|.+.|+.   ....+....     ..+.-..++.++.+..++|++|-+....        
T Consensus         6 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~~~~~~~~-----~D~~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~   80 (319)
T 4b8w_A            6 SMRILVTGGSGLVGKAIQKVVADGAGLPGEDWVFVSSKD-----ADLTDTAQTRALFEKVQPTHVIHLAAMVGGLFRNIK   80 (319)
T ss_dssp             CCEEEEETCSSHHHHHHHHHHHTTTCCTTCEEEECCTTT-----CCTTSHHHHHHHHHHSCCSEEEECCCCCCCHHHHTT
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhcCCcccccccccCcee-----cccCCHHHHHHHHhhcCCCEEEECceeccccccccc
Confidence            456888999999999999999998861   111121111     1122223455665534589999874321        


Q ss_pred             -----------hHHHHHHHHHHcCCcEEEEecC
Q 019500          111 -----------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       111 -----------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                                 ....+++.|.+.|++.+|.+++
T Consensus        81 ~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS  113 (319)
T 4b8w_A           81 YNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLS  113 (319)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcc
Confidence                       1234688888889988776565

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=92.85  E-value=0.23  Score=49.28  Aligned_cols=101  Identities=16%  Similarity=0.132  Sum_probs=59.2

Q ss_pred             hhhhhhhhcccccccCCCC----CCCCCCCCcccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee
Q 019500            7 SRVVRSLYMSSEICCGQSR----SFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH   82 (340)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i   82 (340)
                      +|-.|.+|....-|-....    .+.+.+  .     ....+|.|+|+ |.||..++..+.+.|++++ .+|++.  +..
T Consensus         5 ~~~l~~~f~~~~~~~~~~~~~~~~~~~~~--~-----~~~~kV~VIGa-G~MG~~iA~~la~~G~~V~-l~D~~~--~~~   73 (463)
T 1zcj_A            5 AKALQYAFFAEKSANKWSTPSGASWKTAS--A-----QPVSSVGVLGL-GTMGRGIAISFARVGISVV-AVESDP--KQL   73 (463)
T ss_dssp             HHHHHHHHHGGGGGGSCBCTTCCBTTTCC--C-----CCCCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECSSH--HHH
T ss_pred             HHHHHHHHHHHHHhcCCCCccCCCccccc--c-----CCCCEEEEECc-CHHHHHHHHHHHhCCCeEE-EEECCH--HHH
Confidence            4556778877665544221    122221  0     11235777799 9999999999999999855 556543  111


Q ss_pred             ----------------cC-----------cccccCHHHhhccCCCcEEEEecChhh--HHHHHHHHHH
Q 019500           83 ----------------LG-----------LPVFNTVAEAKAETKANASAIYVPPPF--AAAAILEAME  121 (340)
Q Consensus        83 ----------------~G-----------~p~y~sl~dip~~~~vDlavi~vp~~~--v~~~v~ea~~  121 (340)
                                      .|           ..+..+++++.   +.|++|+++|.+.  ..+++++..+
T Consensus        74 ~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---~aDlVIeaVpe~~~~k~~v~~~l~~  138 (463)
T 1zcj_A           74 DAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELS---TVDLVVEAVFEDMNLKKKVFAELSA  138 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCGGGGT---TCSEEEECCCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCHHHHC---CCCEEEEcCCCCHHHHHHHHHHHHh
Confidence                            01           12344564443   4899999999764  2445554433

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=92.81  E-value=0.25  Score=47.39  Aligned_cols=92  Identities=16%  Similarity=0.150  Sum_probs=66.0

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC------------------Cc--------eecC--ccccc--
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG------------------GT--------EHLG--LPVFN--   89 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~------------------g~--------~i~G--~p~y~--   89 (340)
                      .+.++|.|.|. |++|+.+.|.+.+.+.++++.-+|...                  |+        .+.|  ++++.  
T Consensus         5 ~~~~kvgInGF-GRIGrlv~R~~~~~~veivainDp~~d~~~~a~l~~yDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~   83 (346)
T 3h9e_O            5 ARELTVGINGF-GRIGRLVLRACMEKGVKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEFRNGQLVVDNHEISVYQCK   83 (346)
T ss_dssp             -CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred             CCeeEEEEECC-ChHHHHHHHHHHhCCCEEEEEeCCCCChhHhcccccccCCCCCCCCcEEEcCCEEEECCEEEEEEecC
Confidence            35678999999 999999999988888888865455210                  00        0234  34442  


Q ss_pred             CHHHhh-ccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500           90 TVAEAK-AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus        90 sl~dip-~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      +.++++ .+..+|+++-++......+-....++.|.|.+||-.+
T Consensus        84 dp~~i~W~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkVVIsap  127 (346)
T 3h9e_O           84 EPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAP  127 (346)
T ss_dssp             SGGGCCGGGGTSCEEEECSSSCCSHHHHHHHHHTTCSEEEESSC
T ss_pred             ChhhCCcccccccEEEEeccccCCHHHHHHHHHcCCCEEEECCC
Confidence            566666 1125999999999888888899999999998775444

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=92.81  E-value=0.18  Score=47.35  Aligned_cols=97  Identities=10%  Similarity=0.152  Sum_probs=61.0

Q ss_pred             CCcccccCcCCeEEEEeCCCCCcchHHHHHHHHc-CC-eEEEeeCCCCC------------Cce--ecCcccccCHHHhh
Q 019500           32 PPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEY-GT-KMVGGVTPKKG------------GTE--HLGLPVFNTVAEAK   95 (340)
Q Consensus        32 ~~l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~-G~-~vv~~VnP~~~------------g~~--i~G~p~y~sl~dip   95 (340)
                      .+++.+|..+  +|+|.|++|.+|+.+++.|.+. |+ +++ .++.+..            +-+  ...+.-..++.++.
T Consensus        13 ~~~~~~~~~k--~vlVTGatG~iG~~l~~~L~~~~g~~~V~-~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~   89 (344)
T 2gn4_A           13 PNHQNMLDNQ--TILITGGTGSFGKCFVRKVLDTTNAKKII-VYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYAL   89 (344)
T ss_dssp             ---CCTTTTC--EEEEETTTSHHHHHHHHHHHHHCCCSEEE-EEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHT
T ss_pred             ccHHHhhCCC--EEEEECCCcHHHHHHHHHHHhhCCCCEEE-EEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHH
Confidence            3466667554  5778899999999999999998 97 665 4443210            000  11222233455555


Q ss_pred             ccCCCcEEEEecChhh------------------HHHHHHHHHHcCCcEEEEecCC
Q 019500           96 AETKANASAIYVPPPF------------------AAAAILEAMEAELDLVVCITEG  133 (340)
Q Consensus        96 ~~~~vDlavi~vp~~~------------------v~~~v~ea~~~Gvk~vvi~t~G  133 (340)
                      +  ++|++|-+.....                  ...+++.|.+.|++.+|.+++.
T Consensus        90 ~--~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~  143 (344)
T 2gn4_A           90 E--GVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTD  143 (344)
T ss_dssp             T--TCSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCG
T ss_pred             h--cCCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCC
Confidence            4  5999998763211                  2457788888999988877764

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=92.79  E-value=0.15  Score=46.00  Aligned_cols=88  Identities=13%  Similarity=0.103  Sum_probs=55.0

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC-CCc--e-e-cCcccccCHHHhhccCCCcEEEEecCh--------
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK-GGT--E-H-LGLPVFNTVAEAKAETKANASAIYVPP--------  109 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~-~g~--~-i-~G~p~y~sl~dip~~~~vDlavi~vp~--------  109 (340)
                      .+|+|.|+ |.+|+.+++.|.+.|++++....... ...  + + ..+.-..++.++.+. ++|++|-+...        
T Consensus         4 ~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~~d~vih~a~~~~~~~~~~   81 (286)
T 3gpi_A            4 SKILIAGC-GDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHL-RPEILVYCVAASEYSDEHY   81 (286)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGG-CCSEEEECHHHHHHC----
T ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcC-CCCEEEEeCCCCCCCHHHH
Confidence            35788895 99999999999999998774432211 000  0 1 122222344444442 49999977633        


Q ss_pred             -----hhHHHHHHHHHHcCCcEEEEecC
Q 019500          110 -----PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       110 -----~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                           .....+++.|.+.|++.+|.+++
T Consensus        82 ~~~n~~~~~~ll~a~~~~~~~~~v~~SS  109 (286)
T 3gpi_A           82 RLSYVEGLRNTLSALEGAPLQHVFFVSS  109 (286)
T ss_dssp             -CCSHHHHHHHHHHTTTSCCCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhhCCCCEEEEEcc
Confidence                 23566777777788888776665

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=92.63  E-value=0.35  Score=44.66  Aligned_cols=89  Identities=10%  Similarity=-0.028  Sum_probs=53.9

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC------Cc------------e---e-cCcccccCHHHhhccCCCc
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG------GT------------E---H-LGLPVFNTVAEAKAETKAN  101 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~------g~------------~---i-~G~p~y~sl~dip~~~~vD  101 (340)
                      +|+|.|++|.+|+.+++.|.+.|++++........      ..            .   + ..+.-..++.++.+..++|
T Consensus         4 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d   83 (348)
T 1ek6_A            4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFM   83 (348)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCCEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhcCCC
Confidence            57889999999999999999999987744321110      00            0   0 1111122344444322588


Q ss_pred             EEEEecCh------------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          102 ASAIYVPP------------------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       102 lavi~vp~------------------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      ++|-+...                  .....+++.|.+.|++.+|.+++
T Consensus        84 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS  132 (348)
T 1ek6_A           84 AVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSS  132 (348)
T ss_dssp             EEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             EEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECc
Confidence            88876532                  12345667777788887776665

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=92.57  E-value=0.4  Score=44.87  Aligned_cols=88  Identities=14%  Similarity=0.096  Sum_probs=55.3

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCcee---cCcccc--------cCHHHhhccCCCcEEEEecCh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEH---LGLPVF--------NTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~i---~G~p~y--------~sl~dip~~~~vDlavi~vp~  109 (340)
                      +.+|+|.|++|.+|+.+++.|.+. |++++........-...   .++..+        .++.++.+  ++|++|-+...
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~--~~d~Vih~A~~  101 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVK--KCDVILPLVAI  101 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHH--HCSEEEECBCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhc--cCCEEEEcCcc
Confidence            346889999999999999999988 89877544322110111   222222        23444554  58999864321


Q ss_pred             ------------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          110 ------------------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       110 ------------------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                                        .....+++.|.+.| +.+|.+++
T Consensus       102 ~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~v~~SS  141 (372)
T 3slg_A          102 ATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPST  141 (372)
T ss_dssp             CCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-CEEEEECC
T ss_pred             ccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-CcEEEeCc
Confidence                              11245788888889 77666665

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=92.45  E-value=0.18  Score=47.45  Aligned_cols=77  Identities=9%  Similarity=0.043  Sum_probs=54.2

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCC-eEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecC--------------
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVP--------------  108 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~-~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp--------------  108 (340)
                      +|+|.|++|.+|+.+++.|.+.|+ +++ .++...         -..++.++.+  ++|+++-+..              
T Consensus         2 ~VlVtGatG~iG~~l~~~L~~~g~~~v~-~~d~~~---------d~~~l~~~~~--~~d~Vih~a~~~~~~~~~~~~~~n   69 (369)
T 3st7_A            2 NIVITGAKGFVGKNLKADLTSTTDHHIF-EVHRQT---------KEEELESALL--KADFIVHLAGVNRPEHDKEFSLGN   69 (369)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHCCCEEE-ECCTTC---------CHHHHHHHHH--HCSEEEECCCSBCTTCSTTCSSSC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEE-EECCCC---------CHHHHHHHhc--cCCEEEECCcCCCCCCHHHHHHHH
Confidence            688999999999999999999998 766 555421         1234555555  4898887642              


Q ss_pred             hhhHHHHHHHHHHcCCc-EEEEecC
Q 019500          109 PPFAAAAILEAMEAELD-LVVCITE  132 (340)
Q Consensus       109 ~~~v~~~v~ea~~~Gvk-~vvi~t~  132 (340)
                      -.....+++.|.+.|++ .+|.+++
T Consensus        70 ~~~~~~l~~a~~~~~~~~~~v~~Ss   94 (369)
T 3st7_A           70 VSYLDHVLDILTRNTKKPAILLSSS   94 (369)
T ss_dssp             CBHHHHHHHHHTTCSSCCEEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCeEEEeCc
Confidence            22345678888888987 6665554

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=92.41  E-value=0.14  Score=46.28  Aligned_cols=84  Identities=15%  Similarity=0.049  Sum_probs=52.6

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee-cCcccccCHHHhhccCCCcEEEEecChh------------
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-LGLPVFNTVAEAKAETKANASAIYVPPP------------  110 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i-~G~p~y~sl~dip~~~~vDlavi~vp~~------------  110 (340)
                      +|+|.|++|..|+.+++.|. .|++++. ++.+.  ..+ ..+.-..++.++.+..++|+++-+....            
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~-~~r~~--~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~   77 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PVGNLIA-LDVHS--KEFCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELA   77 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TTSEEEE-ECTTC--SSSCCCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHH
T ss_pred             eEEEECCCCHHHHHHHHHhh-cCCeEEE-ecccc--ccccccCCCHHHHHHHHHhcCCCEEEECcccCCHhhhhcCHHHH
Confidence            58889999999999999988 7998774 44332  111 1222233455555422489998875321            


Q ss_pred             ------hHHHHHHHHHHcCCcEEEEecC
Q 019500          111 ------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       111 ------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                            ....+++.|.+.|++ +|.+++
T Consensus        78 ~~~n~~~~~~l~~a~~~~~~~-~v~~SS  104 (299)
T 1n2s_A           78 QLLNATSVEAIAKAANETGAW-VVHYST  104 (299)
T ss_dssp             HHHHTHHHHHHHHHHTTTTCE-EEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHcCCc-EEEEec
Confidence                  135567777777885 454554

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=92.35  E-value=0.31  Score=44.38  Aligned_cols=89  Identities=17%  Similarity=0.172  Sum_probs=54.0

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc-ee-cCcccc-------cCHHHhhccCCCcEEEEecChh----
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-EH-LGLPVF-------NTVAEAKAETKANASAIYVPPP----  110 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~-~i-~G~p~y-------~sl~dip~~~~vDlavi~vp~~----  110 (340)
                      +|+|.|++|.+|+.+++.|.+.|++++.......... .. .++..+       .++.++.+...+|.++-+....    
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~~   81 (311)
T 2p5y_A            2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPKGVPFFRVDLRDKEGVERAFREFRPTHVSHQAAQASVKV   81 (311)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGGGSCTTCCEECCCTTCHHHHHHHHHHHCCSEEEECCSCCCHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchhhcccCeEEEECCCCCHHHHHHHHHhcCCCEEEECccccCchh
Confidence            5788999999999999999999999774332111001 11 122211       2344444322488888764321    


Q ss_pred             --------------hHHHHHHHHHHcCCcEEEEecC
Q 019500          111 --------------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       111 --------------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                                    ....+++.|.+.|++.+|.+++
T Consensus        82 ~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS  117 (311)
T 2p5y_A           82 SVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFAST  117 (311)
T ss_dssp             HHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             hhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence                          1245677777888888776665

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=92.31  E-value=0.23  Score=45.11  Aligned_cols=87  Identities=11%  Similarity=0.062  Sum_probs=53.4

Q ss_pred             EEEEeCCCCCcchHHHHHHHHc--CCeEEEeeC-CCCCCce-ecCc-------ccccCHHHhhccCCCcEEEEecCh---
Q 019500           44 RVICQGITGKNGTFHTEQAIEY--GTKMVGGVT-PKKGGTE-HLGL-------PVFNTVAEAKAETKANASAIYVPP---  109 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~--G~~vv~~Vn-P~~~g~~-i~G~-------p~y~sl~dip~~~~vDlavi~vp~---  109 (340)
                      +|+|.|++|.+|+.+++.|.+.  |++++.... +..  .+ ..++       .-..++.++.++.++|++|-+...   
T Consensus         4 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~--~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~   81 (312)
T 2yy7_A            4 KILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLN--TDVVNSGPFEVVNALDFNQIEHLVEVHKITDIYLMAALLSA   81 (312)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCS--CHHHHSSCEEECCTTCHHHHHHHHHHTTCCEEEECCCCCHH
T ss_pred             eEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcc--ccccCCCceEEecCCCHHHHHHHHhhcCCCEEEECCccCCC
Confidence            5788899999999999999887  788764332 221  11 1112       122244555442358999887532   


Q ss_pred             --------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          110 --------------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       110 --------------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                                    .....+++.|.+.|++.+|.+++
T Consensus        82 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS  118 (312)
T 2yy7_A           82 TAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSS  118 (312)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEE
T ss_pred             chhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence                          11235667777778877665554

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=92.25  E-value=0.39  Score=43.70  Aligned_cols=89  Identities=13%  Similarity=0.078  Sum_probs=54.5

Q ss_pred             EEEEeCCCCCcchHHHHHHHHc--CCeEEEee-CCCCC-C-cee-cCcccccCHHHhhccCCCcEEEEecChh-------
Q 019500           44 RVICQGITGKNGTFHTEQAIEY--GTKMVGGV-TPKKG-G-TEH-LGLPVFNTVAEAKAETKANASAIYVPPP-------  110 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~--G~~vv~~V-nP~~~-g-~~i-~G~p~y~sl~dip~~~~vDlavi~vp~~-------  110 (340)
                      +|+|.|++|.+|+.+++.|.+.  |++++... ++... + .-+ ..+.-..++.++.+..++|+++-+....       
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~   80 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFITLDVSNRDEIDRAVEKYSIDAIFHLAGILSAKGEKD   80 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCTTCCEEECCTTCHHHHHHHHHHTTCCEEEECCCCCHHHHHHC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCccccCceEEEecCCCHHHHHHHHhhcCCcEEEECCcccCCccccC
Confidence            3678899999999999999887  78866432 22210 0 011 1122223455555423589999875321       


Q ss_pred             ----------hHHHHHHHHHHcCCcEEEEecC
Q 019500          111 ----------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       111 ----------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                                ....+++.|.+.|++.+|.+++
T Consensus        81 ~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS  112 (317)
T 3ajr_A           81 PALAYKVNMNGTYNILEAAKQHRVEKVVIPST  112 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             hHHHhhhhhHHHHHHHHHHHHcCCCEEEEecC
Confidence                      1345677777889988776664

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=92.24  E-value=0.44  Score=43.72  Aligned_cols=91  Identities=13%  Similarity=0.146  Sum_probs=54.4

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc--e------ecCccc-------ccCHHHhhccCCCcEEEEe
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--E------HLGLPV-------FNTVAEAKAETKANASAIY  106 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~--~------i~G~p~-------y~sl~dip~~~~vDlavi~  106 (340)
                      +.+|+|.|++|.+|+.+++.|.+.|++++..........  .      -.++..       ..++.++.+..++|++|-+
T Consensus        14 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih~   93 (335)
T 1rpn_A           14 TRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNL   93 (335)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHcCCCEEEEC
Confidence            567899999999999999999999998774443221000  0      011221       2234444432247988876


Q ss_pred             cChh------------------hHHHHHHHHHHcCC-cEEEEecC
Q 019500          107 VPPP------------------FAAAAILEAMEAEL-DLVVCITE  132 (340)
Q Consensus       107 vp~~------------------~v~~~v~ea~~~Gv-k~vvi~t~  132 (340)
                      ....                  ....+++.|.+.|+ +.+|.+++
T Consensus        94 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS  138 (335)
T 1rpn_A           94 AAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQAST  138 (335)
T ss_dssp             CSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred             ccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            4321                  13356777777786 67665654

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=92.23  E-value=0.46  Score=44.42  Aligned_cols=89  Identities=10%  Similarity=-0.084  Sum_probs=55.4

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHH--cCCeEEEeeC-CC------------CCCcee---------cCcccccCHHHhhcc
Q 019500           42 NTRVICQGITGKNGTFHTEQAIE--YGTKMVGGVT-PK------------KGGTEH---------LGLPVFNTVAEAKAE   97 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~--~G~~vv~~Vn-P~------------~~g~~i---------~G~p~y~sl~dip~~   97 (340)
                      ..+|+|.|++|-+|+.+++.|.+  .|++++.... +.            ..-...         ..+.-..+++++. .
T Consensus        10 ~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-~   88 (362)
T 3sxp_A           10 NQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRLE-K   88 (362)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHHT-T
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHhh-c
Confidence            45688999999999999999999  8999774432 21            000011         1122223455551 1


Q ss_pred             CCCcEEEEecCh----------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500           98 TKANASAIYVPP----------------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus        98 ~~vDlavi~vp~----------------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      .++|++|-+...                .....+++.|.+.|++ +|.+++
T Consensus        89 ~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~~SS  138 (362)
T 3sxp_A           89 LHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK-VIYASS  138 (362)
T ss_dssp             SCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEEEEE
T ss_pred             cCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEEeCc
Confidence            269999866431                2234677888888998 665665

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*

Probab=92.10  E-value=0.38  Score=45.97  Aligned_cols=88  Identities=16%  Similarity=0.043  Sum_probs=61.3

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc----CCeEEEeeCC---C----------CC----------Cc--eecC--ccccc--
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY----GTKMVGGVTP---K----------KG----------GT--EHLG--LPVFN--   89 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~----G~~vv~~VnP---~----------~~----------g~--~i~G--~p~y~--   89 (340)
                      ++|.|.|+ |++|+.+.+.+.+.    .+++++.-++   +          -.          ++  .+.|  ++++.  
T Consensus         2 ikVaInGf-GrIGr~v~r~l~~~~~~~~~evvaInd~~~~~~~a~ll~ydS~hg~f~~~v~~~~~~l~v~g~~i~v~~~~   80 (335)
T 1obf_O            2 IRVAINGY-GRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANR   80 (335)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCS
T ss_pred             cEEEEECC-CHHHHHHHHHHHhcCCCCCcEEEEEeCCCCHHHHHHHhccCCcCCCCCCCEEEeCCEEEECCEEEEEEEcC
Confidence            68889999 99999999988876    5677754443   1          00          01  1233  34442  


Q ss_pred             CHHHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500           90 TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus        90 sl~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      +.++++- +.++|+++.+++.....+.....++.|.|.++| +.
T Consensus        81 dp~~~~w~~~gvDiV~estG~f~s~e~a~~h~~aGakkVvi-Sa  123 (335)
T 1obf_O           81 NPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVII-SA  123 (335)
T ss_dssp             CGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEE-SS
T ss_pred             CcccCCccccCCCEEEEccCccccHHHHHHHHHcCCCEEEE-CC
Confidence            4566652 136999999999888888888999999998664 53

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=92.07  E-value=0.16  Score=50.92  Aligned_cols=87  Identities=15%  Similarity=0.056  Sum_probs=55.8

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee----------------c-------------CcccccCHHHh
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH----------------L-------------GLPVFNTVAEA   94 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i----------------~-------------G~p~y~sl~di   94 (340)
                      +|.|+|+ |.||..++..+.+.|++++ ..|++.  +.+                .             .+....+++++
T Consensus         7 kVgVIGa-G~MG~~IA~~la~aG~~V~-l~D~~~--e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (483)
T 3mog_A            7 TVAVIGS-GTMGAGIAEVAASHGHQVL-LYDISA--EALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHAL   82 (483)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCEE-EECSCH--HHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGGG
T ss_pred             EEEEECc-CHHHHHHHHHHHHCCCeEE-EEECCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHHh
Confidence            4666699 9999999999999999855 556543  111                1             12344566655


Q ss_pred             hccCCCcEEEEecChhh--HHHHHHHHHHc-CCcEEE-EecCCCChh
Q 019500           95 KAETKANASAIYVPPPF--AAAAILEAMEA-ELDLVV-CITEGIPQH  137 (340)
Q Consensus        95 p~~~~vDlavi~vp~~~--v~~~v~ea~~~-Gvk~vv-i~t~Gf~e~  137 (340)
                      .   +.|++|.++|.+.  -.+++++..+. .-..++ .-|++++.+
T Consensus        83 ~---~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~  126 (483)
T 3mog_A           83 A---AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISIT  126 (483)
T ss_dssp             G---GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH
T ss_pred             c---CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHH
Confidence            4   4899999999874  24566665443 223333 346777643

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=92.07  E-value=0.035  Score=45.63  Aligned_cols=66  Identities=8%  Similarity=-0.037  Sum_probs=47.4

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCcc--cccCHHHhhccCCCcEEEEecChhh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLP--VFNTVAEAKAETKANASAIYVPPPF  111 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~---i~G~p--~y~sl~dip~~~~vDlavi~vp~~~  111 (340)
                      ..+|.|+|+ |.+|+.+++.|.+.|++ +..+|++... ++   -.|.+  .+.++.+..+  +.|+++.++|...
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~-v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~Divi~at~~~~   92 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQYK-VTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIK--NNDVIITATSSKT   92 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTCE-EEEEESCHHHHHHHHHHHTCEEEECSCHHHHHH--TCSEEEECSCCSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCE-EEEEcCCHHHHHHHHHHhCCceEeecCHHHHhc--CCCEEEEeCCCCC
Confidence            446778898 99999999998888998 6577765410 11   12333  5678888766  5899999998763

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=92.07  E-value=0.53  Score=43.72  Aligned_cols=89  Identities=19%  Similarity=0.144  Sum_probs=54.8

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC-CCCCCcee-------cCccc-------ccCHHHhhccCCCcEEEEec
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEH-------LGLPV-------FNTVAEAKAETKANASAIYV  107 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn-P~~~g~~i-------~G~p~-------y~sl~dip~~~~vDlavi~v  107 (340)
                      .+|+|.|++|.+|+.+++.|.+.|++++.... +... ...       .++..       ..++.++.+..++|++|-+.
T Consensus        10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A   88 (357)
T 1rkx_A           10 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTV-PSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHMA   88 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSS-SCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCccc-chhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEECC
Confidence            46888999999999999999999998774432 2210 111       12221       22344444322489999876


Q ss_pred             Chh------------------hHHHHHHHHHHcC-CcEEEEecC
Q 019500          108 PPP------------------FAAAAILEAMEAE-LDLVVCITE  132 (340)
Q Consensus       108 p~~------------------~v~~~v~ea~~~G-vk~vvi~t~  132 (340)
                      ...                  ....+++.|.+.+ ++.+|.+++
T Consensus        89 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS  132 (357)
T 1rkx_A           89 AQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITS  132 (357)
T ss_dssp             SCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECC
T ss_pred             CCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecC
Confidence            410                  1234667777776 778777776

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=91.92  E-value=0.33  Score=44.53  Aligned_cols=90  Identities=9%  Similarity=0.116  Sum_probs=53.7

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc--ee------cCcccc-------cCHHHhhccCCCcEEEEec
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EH------LGLPVF-------NTVAEAKAETKANASAIYV  107 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~--~i------~G~p~y-------~sl~dip~~~~vDlavi~v  107 (340)
                      .+|+|.|++|.+|+.+++.|.+.|++++..........  .+      .++..+       .++.++.+..++|++|-+.
T Consensus         4 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A   83 (345)
T 2z1m_A            4 KRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYNLA   83 (345)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEEECC
Confidence            36788999999999999999999998774332211000  00      012222       2344444322479888775


Q ss_pred             Chh------------------hHHHHHHHHHHcCC-cEEEEecC
Q 019500          108 PPP------------------FAAAAILEAMEAEL-DLVVCITE  132 (340)
Q Consensus       108 p~~------------------~v~~~v~ea~~~Gv-k~vvi~t~  132 (340)
                      ...                  ....+++.|.+.|+ +.+|.+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS  127 (345)
T 2z1m_A           84 AQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQAST  127 (345)
T ss_dssp             CCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             CCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEec
Confidence            321                  13456777777787 66665655

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=91.86  E-value=0.51  Score=44.03  Aligned_cols=79  Identities=10%  Similarity=-0.032  Sum_probs=50.0

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCC-eEEEeeCCCCCCceecC-----------------cccccCHHHhhccCCCcEEE
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGGTEHLG-----------------LPVFNTVAEAKAETKANASA  104 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~-~vv~~VnP~~~g~~i~G-----------------~p~y~sl~dip~~~~vDlav  104 (340)
                      .+|.|+|+ |.+|..++..+.+.|+ + +..++++.  +...+                 +....+++++.   +.|+++
T Consensus         5 ~kI~VIGa-G~~G~~ia~~la~~g~~~-V~l~D~~~--~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~a~~---~aDiVi   77 (317)
T 2ewd_A            5 RKIAVIGS-GQIGGNIAYIVGKDNLAD-VVLFDIAE--GIPQGKALDITHSMVMFGSTSKVIGTDDYADIS---GSDVVI   77 (317)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCE-EEEECSSS--SHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGT---TCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCce-EEEEeCCc--hHHHHHHHHHHhhhhhcCCCcEEEECCCHHHhC---CCCEEE
Confidence            46778899 9999999999988888 7 33666543  21111                 22224554433   589999


Q ss_pred             EecC----------------hhhHHHHHHHHHHcCCcEEE
Q 019500          105 IYVP----------------PPFAAAAILEAMEAELDLVV  128 (340)
Q Consensus       105 i~vp----------------~~~v~~~v~ea~~~Gvk~vv  128 (340)
                      ++++                .+...+++++..+..-+.++
T Consensus        78 ~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~ii  117 (317)
T 2ewd_A           78 ITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFV  117 (317)
T ss_dssp             ECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred             EeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEE
Confidence            9993                23355667776666545433

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=91.68  E-value=0.66  Score=42.05  Aligned_cols=86  Identities=14%  Similarity=0.146  Sum_probs=52.7

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce--ecCcccc-cCHH-----HhhccCCCcEEEEecCh------
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--HLGLPVF-NTVA-----EAKAETKANASAIYVPP------  109 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~--i~G~p~y-~sl~-----dip~~~~vDlavi~vp~------  109 (340)
                      +|+|.|++|.+|+.+++.|.+.|++++..........+  -.++..+ .++.     +..+  . |++|-+...      
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~-d~vih~A~~~~~~~~   78 (312)
T 3ko8_A            2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAELHVRDLKDYSWGAGIK--G-DVVFHFAANPEVRLS   78 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGSCTTSEEECCCTTSTTTTTTCC--C-SEEEECCSSCSSSGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhcCCCceEEECccccHHHHhhcC--C-CEEEECCCCCCchhh
Confidence            58889999999999999999999997743321110011  1122222 1222     2222  2 888865531      


Q ss_pred             ------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          110 ------------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       110 ------------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                                  .....+++.|.+.|++.+|.+++
T Consensus        79 ~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS  113 (312)
T 3ko8_A           79 TTEPIVHFNENVVATFNVLEWARQTGVRTVVFASS  113 (312)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             hhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCc
Confidence                        12346778888889988776665

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=91.63  E-value=0.35  Score=44.04  Aligned_cols=88  Identities=16%  Similarity=0.109  Sum_probs=49.3

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC-Ccee-cCcccccCHHHhhccCCCcEEEEecChh----------
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-GTEH-LGLPVFNTVAEAKAETKANASAIYVPPP----------  110 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~-g~~i-~G~p~y~sl~dip~~~~vDlavi~vp~~----------  110 (340)
                      .+|+|.|++|.+|+.+++.|.+.|++++. ++.+.. +..+ ..+.-..++.++.+..++|++|-+....          
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~-~~r~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~   81 (315)
T 2ydy_A            3 RRVLVTGATGLLGRAVHKEFQQNNWHAVG-CGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPD   81 (315)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEE-EC------------------CHHHHHHHCCSEEEECC-------------
T ss_pred             CeEEEECCCcHHHHHHHHHHHhCCCeEEE-EccCCCCCCeEEecCCCHHHHHHHHHhhCCCEEEECCcccChhhhhcCHH
Confidence            36888999999999999999999998774 442210 0001 1122223444444322489888765321          


Q ss_pred             --------hHHHHHHHHHHcCCcEEEEecC
Q 019500          111 --------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       111 --------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                              ....+++.|.+.|++ +|.+++
T Consensus        82 ~~~~~n~~~~~~l~~a~~~~~~~-~v~~SS  110 (315)
T 2ydy_A           82 AASQLNVDASGNLAKEAAAVGAF-LIYISS  110 (315)
T ss_dssp             ------CHHHHHHHHHHHHHTCE-EEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCe-EEEEch
Confidence                    235577788888885 444554

>2g6t_A Uncharacterized protein, homolog HI1244 from haemophilus influenzae; hypothetical protein, structural genomics, PSI; 3.00A {Clostridium acetobutylicum} SCOP: c.147.1.1

Probab=91.54  E-value=0.38  Score=44.95  Aligned_cols=115  Identities=13%  Similarity=0.109  Sum_probs=77.3

Q ss_pred             EEEEeCCCCCcchHHHHHHHHc----CCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEY----GTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~----G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea  119 (340)
                      +|+|.|+ |..+......++..    .+.+++..++..-++.++|.|++. .+|+..- +.|-++|+..- .-.++=.++
T Consensus         3 ~~~I~g~-~~~~~~a~n~~~~~~~~~~~~i~~~~~~dk~a~~idg~~v~s-~~~i~~~-e~DyiiIa~~~-~~~qi~~~l   78 (306)
T 2g6t_A            3 KCLIWGV-NDEYTLAYDKLLFEISKGNLSIEALISKDKYAKYIDGKEVID-KTEISNY-EFDYIIIFNKE-RYSDIKNEA   78 (306)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHHHTTSEEEEEEECSSCSCSBSSSCBEEC-GGGGGGS-CCSEEEECCTT-THHHHHHHH
T ss_pred             eEEEEec-cHHHHHHHHHHHHHhhcccceEEEEecchhhhhhhCCeeccC-HHHHhcC-CCCEEEEeccc-cHHHHHHHH
Confidence            5788899 66666666665542    367887778765558899999996 4555432 69999999866 566777778


Q ss_pred             HHcCCcEEEEecCCC---ChhhHHHHHHHHhccCCcEEEccCCCCccc
Q 019500          120 MEAELDLVVCITEGI---PQHDMVRVKAALNNQSKTRLVGPNCPGVIK  164 (340)
Q Consensus       120 ~~~Gvk~vvi~t~Gf---~e~~~~~l~~~aar~~girviGPNc~Gi~~  164 (340)
                      ++.||+.==|++.-+   +.-+.++-.+ + +.+++.|+-.||.|-.-
T Consensus        79 ~~~gi~~~ki~~~~~~~i~~~~~~r~~r-L-~N~~~TIISnNC~Gg~i  124 (306)
T 2g6t_A           79 LELGIPERKILNGKFFFISNFDFKRYCK-L-IENPITIISDDCWGGLV  124 (306)
T ss_dssp             HHTTCCGGGEECSGGGGSTTCCHHHHHH-H-HHTTCEEEESSSHHHHH
T ss_pred             HHcCCchhheeeeEEEecccccHHHHHH-h-cCCCcEEEecCchhHHH
Confidence            799986533344322   1223333222 2 57889999999988543

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=91.51  E-value=0.58  Score=43.84  Aligned_cols=31  Identities=32%  Similarity=0.546  Sum_probs=26.6

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEee
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGV   73 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~V   73 (340)
                      .+|+|.|++|.+|+.+++.|.+.|++++...
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~   55 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGYEVHGIV   55 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCCEEEEEE
Confidence            4688999999999999999999999877443

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=91.48  E-value=0.44  Score=47.44  Aligned_cols=90  Identities=10%  Similarity=-0.001  Sum_probs=54.3

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC-Cce-----------------------ecCcccccCHHHhhccC
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-GTE-----------------------HLGLPVFNTVAEAKAET   98 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~-g~~-----------------------i~G~p~y~sl~dip~~~   98 (340)
                      .+|.|+|+ |.||..++..+.+.|++++ .+|++.. +..                       ...+....+++++.   
T Consensus        55 ~kVaVIGa-G~MG~~IA~~la~aG~~V~-l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~al~---  129 (460)
T 3k6j_A           55 NSVAIIGG-GTMGKAMAICFGLAGIETF-LVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFHKLS---  129 (460)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGGGCT---
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCeEE-EEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHHHHc---
Confidence            45778899 9999999999999999855 5555431 000                       01123345665443   


Q ss_pred             CCcEEEEecChhh--HHHHHHHHHHc-CCcEEE-EecCCCChh
Q 019500           99 KANASAIYVPPPF--AAAAILEAMEA-ELDLVV-CITEGIPQH  137 (340)
Q Consensus        99 ~vDlavi~vp~~~--v~~~v~ea~~~-Gvk~vv-i~t~Gf~e~  137 (340)
                      +.|++|.++|.+.  -.+++++..+. .-..++ ..|++++..
T Consensus       130 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~  172 (460)
T 3k6j_A          130 NCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLN  172 (460)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH
T ss_pred             cCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHH
Confidence            4899999999743  33455554332 122333 346677643

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=91.34  E-value=0.5  Score=38.03  Aligned_cols=85  Identities=12%  Similarity=0.006  Sum_probs=50.4

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccc-cC------HHHhhccCCCcEEEEecChhhH-
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVF-NT------VAEAKAETKANASAIYVPPPFA-  112 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y-~s------l~dip~~~~vDlavi~vp~~~v-  112 (340)
                      +|+|+|+ |++|+.+++.|.+.|++++ .++.+... ++  -.|..++ .+      +.++.- .+.|++++++|.+.. 
T Consensus         8 ~v~I~G~-G~iG~~la~~L~~~g~~V~-~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~-~~~d~vi~~~~~~~~n   84 (141)
T 3llv_A            8 EYIVIGS-EAAGVGLVRELTAAGKKVL-AVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDL-EGVSAVLITGSDDEFN   84 (141)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEE-EEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCC-TTCSEEEECCSCHHHH
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCeEE-EEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCc-ccCCEEEEecCCHHHH
Confidence            4677899 9999999999999999866 55543310 01  1233322 22      232211 258999999986443 


Q ss_pred             HHHHHHHHHcCCcEEEEec
Q 019500          113 AAAILEAMEAELDLVVCIT  131 (340)
Q Consensus       113 ~~~v~ea~~~Gvk~vvi~t  131 (340)
                      ..+...+-+.+...++..+
T Consensus        85 ~~~~~~a~~~~~~~iia~~  103 (141)
T 3llv_A           85 LKILKALRSVSDVYAIVRV  103 (141)
T ss_dssp             HHHHHHHHHHCCCCEEEEE
T ss_pred             HHHHHHHHHhCCceEEEEE
Confidence            3345555566755444333

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=91.33  E-value=0.54  Score=43.66  Aligned_cols=83  Identities=16%  Similarity=0.115  Sum_probs=51.0

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcC--CeEEEeeCCCCCC-c----eec--------Cccc-ccCHHHhhccCCCcEEEEec
Q 019500           44 RVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPKKGG-T----EHL--------GLPV-FNTVAEAKAETKANASAIYV  107 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G--~~vv~~VnP~~~g-~----~i~--------G~p~-y~sl~dip~~~~vDlavi~v  107 (340)
                      +|.|+|+ |.+|..++..|.+.|  .+++ .+|.+... +    ++.        ...+ ..+.+++.   +.|++++++
T Consensus         3 kI~VIGa-G~~G~~la~~L~~~g~~~~V~-l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~---~aDvViiav   77 (309)
T 1hyh_A            3 KIGIIGL-GNVGAAVAHGLIAQGVADDYV-FIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALA---DADVVISTL   77 (309)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGT---TCSEEEECC
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCCEEE-EEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCHHHhC---CCCEEEEec
Confidence            6778897 999999999988888  4544 66654310 0    111        1223 24553332   589999999


Q ss_pred             Chhh--------------------HHHHHHHHHHcCCcEE-EEec
Q 019500          108 PPPF--------------------AAAAILEAMEAELDLV-VCIT  131 (340)
Q Consensus       108 p~~~--------------------v~~~v~ea~~~Gvk~v-vi~t  131 (340)
                      |+..                    ..+++++..+..-+.+ +++|
T Consensus        78 ~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~t  122 (309)
T 1hyh_A           78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS  122 (309)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             CCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence            8755                    3567777766554443 3344

>1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: NAD; 1.95A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3

Probab=91.22  E-value=3.6  Score=39.60  Aligned_cols=27  Identities=11%  Similarity=0.036  Sum_probs=20.8

Q ss_pred             ecChHHH--HHHHHHHHhCCCCceEEeec
Q 019500          187 SRSGTLT--YEAVFQTTAVGLGQSTCVGI  213 (340)
Q Consensus       187 SQSG~l~--~~~~~~~~~~giG~S~~vs~  213 (340)
                      ||+|+--  ..+.+.+..||+.+..+.++
T Consensus       200 sq~G~T~~k~~La~~l~~rg~kv~~~~q~  228 (367)
T 1gr0_A          200 SQVGATITHRVLAKLFEDRGVQLDRTMQL  228 (367)
T ss_dssp             CSSCHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             cccCCChHHHHHHHHHHHcCCceeEEEEE
Confidence            7888543  44678889999999988864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=91.15  E-value=0.98  Score=40.78  Aligned_cols=35  Identities=17%  Similarity=0.217  Sum_probs=27.8

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~   77 (340)
                      ..+|+|+|+ |..|..++++|...|...+..||+..
T Consensus        31 ~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            346778899 88999999999999985444788764

>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*

Probab=91.02  E-value=0.57  Score=44.70  Aligned_cols=88  Identities=16%  Similarity=0.138  Sum_probs=63.5

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCC-----------C-------CCc--------eecC--cccc--cCH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPK-----------K-------GGT--------EHLG--LPVF--NTV   91 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~-----------~-------~g~--------~i~G--~p~y--~sl   91 (340)
                      ++|.|.|. |++|+.+.|.+.+. ..++++.-+|.           +       .|+        .+.|  ++++  ++.
T Consensus         2 ~kv~INGf-GrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~dp   80 (332)
T 3pym_A            2 VRVAINGF-GRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVSHDDKHIIVDGKKIATYQERDP   80 (332)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHSTTCEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred             eEEEEECC-CcHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEECCEEEEEEeeccc
Confidence            68889999 99999999987775 57888655562           1       010        0234  3455  357


Q ss_pred             HHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEec
Q 019500           92 AEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCIT  131 (340)
Q Consensus        92 ~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t  131 (340)
                      +++|- +..+|+++-++......+-....++.|.|.++|-.
T Consensus        81 ~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsa  121 (332)
T 3pym_A           81 ANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITA  121 (332)
T ss_dssp             GGSCTTTTTCSEEEECSSSSCSHHHHHHHHHTTCSEEEESS
T ss_pred             ccCCccccCccEEEEecccccCHHHHHHHHHcCCCEEEECC
Confidence            77763 24699999999888888888999999999866533

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=91.00  E-value=0.65  Score=42.24  Aligned_cols=85  Identities=13%  Similarity=0.078  Sum_probs=54.4

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce--------e-cCcccccCHHHhhccCCCcEEEEecCh-----
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--------H-LGLPVFNTVAEAKAETKANASAIYVPP-----  109 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~--------i-~G~p~y~sl~dip~~~~vDlavi~vp~-----  109 (340)
                      +|+|.|++|-+|+.+++.|.+.| .++...+......+        + ..+.- .++.++.+  ++|.++-+...     
T Consensus         3 ~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~--~~d~vih~a~~~~~~~   78 (313)
T 3ehe_A            3 LIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNEEFVNEAARLVKADLAA-DDIKDYLK--GAEEVWHIAANPDVRI   78 (313)
T ss_dssp             CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCGGGSCTTEEEECCCTTT-SCCHHHHT--TCSEEEECCCCCCCC-
T ss_pred             EEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCChhhcCCCcEEEECcCCh-HHHHHHhc--CCCEEEECCCCCChhh
Confidence            57888999999999999999988 44434433221011        1 12222 45556555  58998876431     


Q ss_pred             -------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          110 -------------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       110 -------------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                                   .....+++.|.+.|++.+|.+++
T Consensus        79 ~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS  114 (313)
T 3ehe_A           79 GAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTST  114 (313)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             hhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCc
Confidence                         12344677788889988777776

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=90.89  E-value=1.1  Score=42.05  Aligned_cols=31  Identities=19%  Similarity=0.188  Sum_probs=26.5

Q ss_pred             eEEEEeCCCCCcchHHHHHHH-HcCCeEEEee
Q 019500           43 TRVICQGITGKNGTFHTEQAI-EYGTKMVGGV   73 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~-~~G~~vv~~V   73 (340)
                      ++|+|.|++|.+|+.+++.|. +.|++++...
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~   34 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVD   34 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCCEEEEEe
Confidence            368899999999999999999 8999877443

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}

Probab=90.82  E-value=0.12  Score=49.63  Aligned_cols=88  Identities=16%  Similarity=0.117  Sum_probs=60.4

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCC---C-----------CC---C------c--eecC--ccccc--CHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTP---K-----------KG---G------T--EHLG--LPVFN--TVA   92 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP---~-----------~~---g------~--~i~G--~p~y~--sl~   92 (340)
                      ++|.|.|+ |++|+.+.+.+.+. .+++++.-+.   +           ++   +      +  .+.|  ++++.  +.+
T Consensus         3 ikV~InGf-GrIGr~v~r~l~~~~~~evvaInd~~~~~~~a~ll~yDs~hG~~~~~v~~~~~~l~v~Gk~i~v~~~~dp~   81 (342)
T 2ep7_A            3 IKVGINGF-GRIGRSFFRASWGREEIEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVEAKDDSIVVDGKEIKVFAQKDPS   81 (342)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTCTTCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEEECCSSGG
T ss_pred             eEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHhhhhhcccccccCCCcEEEcCCEEEECCEEEEEEEcCChh
Confidence            68889999 99999999988776 6888754332   1           10   0      1  1223  34453  444


Q ss_pred             Hhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500           93 EAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus        93 dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      +++- +.++|+++.+++.....+.....++.|.|.++ ++.
T Consensus        82 ~~~w~~~gvDiV~estG~~~s~e~a~~hl~aGakkVv-isa  121 (342)
T 2ep7_A           82 QIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVI-ITA  121 (342)
T ss_dssp             GCCHHHHTCSEEEECSSSCCBHHHHTTTGGGTCSEEE-ESS
T ss_pred             hCCccccCCCEEEECCCchhhhhhhHHHHhcCCCEEE-ecC
Confidence            5541 12589999999998888888999999998855 453

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=90.81  E-value=0.36  Score=43.34  Aligned_cols=27  Identities=19%  Similarity=0.338  Sum_probs=24.2

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEE
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMV   70 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv   70 (340)
                      +|+|.|++|.+|+.+++.|.+.|++++
T Consensus         5 ~vlVTGasg~IG~~la~~L~~~G~~V~   31 (267)
T 3rft_A            5 RLLVTGAAGQLGRVMRERLAPMAEILR   31 (267)
T ss_dssp             EEEEESTTSHHHHHHHHHTGGGEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            578899999999999999999998865

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=90.56  E-value=1.3  Score=40.63  Aligned_cols=87  Identities=15%  Similarity=0.143  Sum_probs=54.3

Q ss_pred             EEEEeCCCCCcchHHHHHHHHc---C---CeEEEeeCCCCCC--cee------cCcccc-------cCHHHhhccCCCcE
Q 019500           44 RVICQGITGKNGTFHTEQAIEY---G---TKMVGGVTPKKGG--TEH------LGLPVF-------NTVAEAKAETKANA  102 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~---G---~~vv~~VnP~~~g--~~i------~G~p~y-------~sl~dip~~~~vDl  102 (340)
                      +|+|.|++|.+|+.+++.|.+.   |   ++++........+  +.+      .++..+       .++.++..  ++|+
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~   79 (337)
T 1r6d_A            2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELR--GVDA   79 (337)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTT--TCCE
T ss_pred             eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhc--CCCE
Confidence            5788999999999999999986   7   8876443221100  111      122211       23444443  6899


Q ss_pred             EEEecCh------------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          103 SAIYVPP------------------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       103 avi~vp~------------------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      +|-+...                  .....+++.|.+.+++.+|.+++
T Consensus        80 Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS  127 (337)
T 1r6d_A           80 IVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVST  127 (337)
T ss_dssp             EEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             EEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence            9877532                  12346777888889987776665

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=90.47  E-value=1  Score=41.27  Aligned_cols=89  Identities=11%  Similarity=0.033  Sum_probs=52.8

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC-Cce--------------e-cCcccccCHHHhhccCCCcEEEEec
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-GTE--------------H-LGLPVFNTVAEAKAETKANASAIYV  107 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~-g~~--------------i-~G~p~y~sl~dip~~~~vDlavi~v  107 (340)
                      +|+|.|++|.+|+.+++.|.+.|++++...+.... .+.              + ..+.-..++.++.+..++|++|-+.
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vih~A   81 (338)
T 1udb_A            2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFA   81 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEEECC
Confidence            57889999999999999999999987643221110 000              0 0111112344444323589988754


Q ss_pred             Ch------------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          108 PP------------------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       108 p~------------------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      ..                  .....+++.|.+.|++.+|.+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS  124 (338)
T 1udb_A           82 GLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSS  124 (338)
T ss_dssp             SCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             ccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc
Confidence            21                  11234566677778887776665

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=90.40  E-value=1  Score=42.36  Aligned_cols=89  Identities=8%  Similarity=-0.072  Sum_probs=54.0

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcC--CeEEEeeCCCCCCce---ec--C----cccc---cCHHHhhccCCCcEEEEe
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPKKGGTE---HL--G----LPVF---NTVAEAKAETKANASAIY  106 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G--~~vv~~VnP~~~g~~---i~--G----~p~y---~sl~dip~~~~vDlavi~  106 (340)
                      ++.+|+|+|++|..|..++..|.+.|  .+++ .++.+.....   +.  .    +..+   .++.+...  +.|+++++
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~-l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~--gaDvVi~~   83 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLH-LYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALT--GMDLIIVP   83 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEE-EEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHT--TCSEEEEC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCCEEE-EEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcC--CCCEEEEc
Confidence            34688899988999999888888777  4544 4443220011   11  0    1111   13444443  58999998


Q ss_pred             cC--h--------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          107 VP--P--------------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       107 vp--~--------------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      .+  .              ..+.++++++.+.+.+..+++.+
T Consensus        84 ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S  125 (326)
T 1smk_A           84 AGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS  125 (326)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             CCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence            74  1              34667778888888776555554

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=90.25  E-value=0.76  Score=40.05  Aligned_cols=86  Identities=15%  Similarity=0.190  Sum_probs=54.7

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCcccc-cC------HHHhhccCCCcEEEEecChhhH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVF-NT------VAEAKAETKANASAIYVPPPFA  112 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~---i~G~p~y-~s------l~dip~~~~vDlavi~vp~~~v  112 (340)
                      +|+|+|+ |++|+.+++.|.+.|++++ .++.+... ++   -.|.+++ .+      +.+..- .+.|++++++|.+..
T Consensus         2 ~iiIiG~-G~~G~~la~~L~~~g~~v~-vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i-~~ad~vi~~~~~d~~   78 (218)
T 3l4b_C            2 KVIIIGG-ETTAYYLARSMLSRKYGVV-IINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEV-SKNDVVVILTPRDEV   78 (218)
T ss_dssp             CEEEECC-HHHHHHHHHHHHHTTCCEE-EEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTC-CTTCEEEECCSCHHH
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCc-ccCCEEEEecCCcHH
Confidence            5788898 9999999999999999865 55543310 11   1244332 22      333311 258999999999877


Q ss_pred             HHHHHHHHHc--CCcEEEEecC
Q 019500          113 AAAILEAMEA--ELDLVVCITE  132 (340)
Q Consensus       113 ~~~v~ea~~~--Gvk~vvi~t~  132 (340)
                      -..+...++.  +...++..+.
T Consensus        79 n~~~~~~a~~~~~~~~iia~~~  100 (218)
T 3l4b_C           79 NLFIAQLVMKDFGVKRVVSLVN  100 (218)
T ss_dssp             HHHHHHHHHHTSCCCEEEECCC
T ss_pred             HHHHHHHHHHHcCCCeEEEEEe
Confidence            6666665553  6666554443

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=90.14  E-value=2.2  Score=39.03  Aligned_cols=89  Identities=13%  Similarity=0.092  Sum_probs=54.1

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEee-CCCCCC--c---ee---cCccc-------ccCHHHhhccCCCcEEEE
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGG--T---EH---LGLPV-------FNTVAEAKAETKANASAI  105 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~V-nP~~~g--~---~i---~G~p~-------y~sl~dip~~~~vDlavi  105 (340)
                      ..+|+|.|++|-+|+.+++.|.+.|++++..+ ++....  .   .+   .++..       ..++.++.+  ++|.++-
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~D~Vih   86 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIA--GCDFVFH   86 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHT--TCSEEEE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHc--CCCEEEE
Confidence            34688999999999999999999999976443 332100  0   00   11222       234555554  5888886


Q ss_pred             ecCh---------h--------hHHHHHHHHHHcC-CcEEEEecC
Q 019500          106 YVPP---------P--------FAAAAILEAMEAE-LDLVVCITE  132 (340)
Q Consensus       106 ~vp~---------~--------~v~~~v~ea~~~G-vk~vvi~t~  132 (340)
                      +..+         +        ....+++.|.+.+ ++.+|.+++
T Consensus        87 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS  131 (338)
T 2rh8_A           87 VATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSS  131 (338)
T ss_dssp             ESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred             eCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEec
Confidence            4311         1        1234566777775 888776665

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=90.12  E-value=0.17  Score=48.69  Aligned_cols=75  Identities=15%  Similarity=0.087  Sum_probs=51.2

Q ss_pred             eEEEEeCCCCCcchHHHHHHHH-cCCeEEEeeC---CCC---------CCceec-----C--------cc-cccCHHHhh
Q 019500           43 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVT---PKK---------GGTEHL-----G--------LP-VFNTVAEAK   95 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~-~G~~vv~~Vn---P~~---------~g~~i~-----G--------~p-~y~sl~dip   95 (340)
                      ++|.|+|+ |.+|...+..|.+ .|+++. .++   ++.         .|-.+.     |        +. +..++++..
T Consensus         3 mkI~ViGa-G~~G~~~a~~La~~~G~~V~-~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   80 (404)
T 3c7a_A            3 VKVCVCGG-GNGAHTLSGLAASRDGVEVR-VLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAI   80 (404)
T ss_dssp             EEEEEECC-SHHHHHHHHHHTTSTTEEEE-EECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHH
T ss_pred             ceEEEECC-CHHHHHHHHHHHhCCCCEEE-EEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHh
Confidence            46778899 9999999999977 488755 555   311         000000     2        11 345677765


Q ss_pred             ccCCCcEEEEecChhhHHHHHHHHHH
Q 019500           96 AETKANASAIYVPPPFAAAAILEAME  121 (340)
Q Consensus        96 ~~~~vDlavi~vp~~~v~~~v~ea~~  121 (340)
                      +  +.|++++++|+....+++++...
T Consensus        81 ~--~aD~Vilav~~~~~~~v~~~l~~  104 (404)
T 3c7a_A           81 S--GADVVILTVPAFAHEGYFQAMAP  104 (404)
T ss_dssp             T--TCSEEEECSCGGGHHHHHHHHTT
T ss_pred             C--CCCEEEEeCchHHHHHHHHHHHh
Confidence            4  58999999999999888877654

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=90.05  E-value=1  Score=41.29  Aligned_cols=89  Identities=12%  Similarity=0.067  Sum_probs=54.5

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeC-CCCCCc------------e-e-cCcccccCHHHhhccCCCcEEEEecC
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT------------E-H-LGLPVFNTVAEAKAETKANASAIYVP  108 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~Vn-P~~~g~------------~-i-~G~p~y~sl~dip~~~~vDlavi~vp  108 (340)
                      +|+|.|++|.+|+.+++.|.+.|++++.... .+....            + + ..+.-..++.++.+..++|++|-+..
T Consensus         3 ~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~   82 (347)
T 1orr_A            3 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAG   82 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             EEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEECCc
Confidence            5888999999999999999999999774432 111000            0 1 11111223455544223899988764


Q ss_pred             hh------------------hHHHHHHHHHHcCCc-EEEEecC
Q 019500          109 PP------------------FAAAAILEAMEAELD-LVVCITE  132 (340)
Q Consensus       109 ~~------------------~v~~~v~ea~~~Gvk-~vvi~t~  132 (340)
                      ..                  ....+++.|.+.+++ .+|.+++
T Consensus        83 ~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS  125 (347)
T 1orr_A           83 QVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSST  125 (347)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             ccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecc
Confidence            21                  124567788888886 6665554

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=89.70  E-value=0.22  Score=44.79  Aligned_cols=37  Identities=22%  Similarity=0.205  Sum_probs=30.5

Q ss_pred             CcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (340)
Q Consensus        39 ~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~   77 (340)
                      .-+.-+|+|+|+ |++|..-++.|.+.|.++. .|+|+.
T Consensus        28 ~L~gk~VLVVGg-G~va~~ka~~Ll~~GA~Vt-Vvap~~   64 (223)
T 3dfz_A           28 DLKGRSVLVVGG-GTIATRRIKGFLQEGAAIT-VVAPTV   64 (223)
T ss_dssp             CCTTCCEEEECC-SHHHHHHHHHHGGGCCCEE-EECSSC
T ss_pred             EcCCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EECCCC
Confidence            456667889999 8999999999999998866 788865

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=89.59  E-value=0.87  Score=42.94  Aligned_cols=82  Identities=11%  Similarity=-0.021  Sum_probs=51.4

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCC-eEEEeeCCCCCCceecC-----------------cccccCHHHhhccCCCcEEE
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGGTEHLG-----------------LPVFNTVAEAKAETKANASA  104 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~-~vv~~VnP~~~g~~i~G-----------------~p~y~sl~dip~~~~vDlav  104 (340)
                      .+|.|+|+ |.+|..++..+...|+ + +..++.+.  +.+.|                 +....+++++.   +.|++|
T Consensus        15 ~kI~ViGa-G~vG~~iA~~la~~g~~~-V~L~Di~~--~~l~~~~~~l~~~~~~~~~~~~i~~t~d~~al~---~aD~VI   87 (328)
T 2hjr_A           15 KKISIIGA-GQIGSTIALLLGQKDLGD-VYMFDIIE--GVPQGKALDLNHCMALIGSPAKIFGENNYEYLQ---NSDVVI   87 (328)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSST--THHHHHHHHHHHHHHHHTCCCCEEEESCGGGGT---TCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEECCH--HHHHHHHHHHHhHhhccCCCCEEEECCCHHHHC---CCCEEE
Confidence            47888899 9999998888888888 7 33555443  11111                 22224554443   489999


Q ss_pred             Eec--Ch--------------hhHHHHHHHHHHcCCcEEEEec
Q 019500          105 IYV--PP--------------PFAAAAILEAMEAELDLVVCIT  131 (340)
Q Consensus       105 i~v--p~--------------~~v~~~v~ea~~~Gvk~vvi~t  131 (340)
                      +++  |.              +...+++++..+..-+.++++.
T Consensus        88 ~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~  130 (328)
T 2hjr_A           88 ITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICI  130 (328)
T ss_dssp             ECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             EcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEe
Confidence            998  43              2355667777776655544333

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=89.39  E-value=1  Score=42.48  Aligned_cols=88  Identities=10%  Similarity=-0.023  Sum_probs=54.5

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcCC-eEEEeeCCCCC--Cc---ee------cC----cccccCHHHhhccCCCcEE
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKG--GT---EH------LG----LPVFNTVAEAKAETKANAS  103 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G~-~vv~~VnP~~~--g~---~i------~G----~p~y~sl~dip~~~~vDla  103 (340)
                      ++..+|+|+|+ |.+|+.++..|...|+ + +..++.+..  ..   ++      .+    +....++++...  +.|++
T Consensus         7 ~~~~kI~VIGa-G~vG~~lA~~la~~g~~~-V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~--~aDiV   82 (331)
T 1pzg_A            7 QRRKKVAMIGS-GMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALT--GADCV   82 (331)
T ss_dssp             SCCCEEEEECC-SHHHHHHHHHHHHHTCCE-EEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHT--TCSEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhC--CCCEE
Confidence            34568888899 9999999988888887 7 335544331  00   00      11    222356774333  58999


Q ss_pred             EEec--Chh-------------------hHHHHHHHHHHcCCcEEEEec
Q 019500          104 AIYV--PPP-------------------FAAAAILEAMEAELDLVVCIT  131 (340)
Q Consensus       104 vi~v--p~~-------------------~v~~~v~ea~~~Gvk~vvi~t  131 (340)
                      |+++  |..                   ...++++++.+..-+++++..
T Consensus        83 i~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~  131 (331)
T 1pzg_A           83 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVV  131 (331)
T ss_dssp             EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             EEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEE
Confidence            9998  532                   256677777777655544333

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=89.17  E-value=0.3  Score=47.79  Aligned_cols=78  Identities=24%  Similarity=0.285  Sum_probs=51.0

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce-----ecCcccc-cC------HHHhhccCCCcEEEEecChh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-----HLGLPVF-NT------VAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~-----i~G~p~y-~s------l~dip~~~~vDlavi~vp~~  110 (340)
                      ..|+|+|+ |++|+.+++.|.+.|++++ .|+.+.  +.     -.|+++| .+      |.++.- .+.|++|++++.+
T Consensus         5 ~~viIiG~-Gr~G~~va~~L~~~g~~vv-vId~d~--~~v~~~~~~g~~vi~GDat~~~~L~~agi-~~A~~viv~~~~~   79 (413)
T 3l9w_A            5 MRVIIAGF-GRFGQITGRLLLSSGVKMV-VLDHDP--DHIETLRKFGMKVFYGDATRMDLLESAGA-AKAEVLINAIDDP   79 (413)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTCCEE-EEECCH--HHHHHHHHTTCCCEESCTTCHHHHHHTTT-TTCSEEEECCSSH
T ss_pred             CeEEEECC-CHHHHHHHHHHHHCCCCEE-EEECCH--HHHHHHHhCCCeEEEcCCCCHHHHHhcCC-CccCEEEECCCCh
Confidence            35788899 9999999999999999866 555443  21     2466655 22      333321 2589999999875


Q ss_pred             hH-HHHHHHHHHcCCc
Q 019500          111 FA-AAAILEAMEAELD  125 (340)
Q Consensus       111 ~v-~~~v~ea~~~Gvk  125 (340)
                      .. ..++..+-+.+.+
T Consensus        80 ~~n~~i~~~ar~~~p~   95 (413)
T 3l9w_A           80 QTNLQLTEMVKEHFPH   95 (413)
T ss_dssp             HHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            44 4445555555654

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=89.01  E-value=1.3  Score=45.68  Aligned_cols=91  Identities=13%  Similarity=0.073  Sum_probs=55.7

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC-CCCCCc---ee-----cCccc-------ccCHHHhhccCCCcEEEE
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT---EH-----LGLPV-------FNTVAEAKAETKANASAI  105 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn-P~~~g~---~i-----~G~p~-------y~sl~dip~~~~vDlavi  105 (340)
                      ..+|+|.|++|.+|+.+++.|.+.|++++.... +....+   ++     .++..       ..++.++.+..++|++|-
T Consensus        11 ~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D~Vih   90 (699)
T 1z45_A           11 SKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIH   90 (699)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCCCCEEEE
Confidence            346888999999999999999999998774432 211000   00     11221       123444443225899987


Q ss_pred             ecChh------------------hHHHHHHHHHHcCCcEEEEecC
Q 019500          106 YVPPP------------------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       106 ~vp~~------------------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      +....                  ....+++.|.+.+++.+|.+++
T Consensus        91 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS  135 (699)
T 1z45_A           91 FAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSS  135 (699)
T ss_dssp             CCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             CCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECc
Confidence            65321                  1234667777788888776665

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=88.95  E-value=0.55  Score=43.99  Aligned_cols=81  Identities=16%  Similarity=0.220  Sum_probs=49.9

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCC--eEEEeeCCCCCCceecC--------c------ccc-cCHHHhhccCCCcEEEEe
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTEHLG--------L------PVF-NTVAEAKAETKANASAIY  106 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~--~vv~~VnP~~~g~~i~G--------~------p~y-~sl~dip~~~~vDlavi~  106 (340)
                      +|.|+|+ |.+|..++..|.+.|+  +++ .++.+.  +...+        .      .+. .+.+++.   +.|+++++
T Consensus         2 kI~VIGa-G~~G~~la~~l~~~g~~~~V~-l~D~~~--~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~---~aDvViia   74 (319)
T 1a5z_A            2 KIGIVGL-GRVGSSTAFALLMKGFAREMV-LIDVDK--KRAEGDALDLIHGTPFTRRANIYAGDYADLK---GSDVVIVA   74 (319)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSSH--HHHHHHHHHHHHHGGGSCCCEEEECCGGGGT---TCSEEEEC
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCCeEE-EEeCCh--HHHHHHHHHHHhhhhhcCCcEEEeCCHHHhC---CCCEEEEc
Confidence            5777899 9999999988888887  654 566543  11111        1      111 2333332   58999999


Q ss_pred             cChhh----------------HHHHHHHHHHcCCcEE-EEec
Q 019500          107 VPPPF----------------AAAAILEAMEAELDLV-VCIT  131 (340)
Q Consensus       107 vp~~~----------------v~~~v~ea~~~Gvk~v-vi~t  131 (340)
                      +|...                ..++++++.+..-+.. +++|
T Consensus        75 v~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~t  116 (319)
T 1a5z_A           75 AGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT  116 (319)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence            98633                4566666666655543 3344

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=88.95  E-value=0.78  Score=42.48  Aligned_cols=30  Identities=17%  Similarity=0.182  Sum_probs=25.3

Q ss_pred             EEEEeCCCCCcchHHHHHHHHc-CCeEEEee
Q 019500           44 RVICQGITGKNGTFHTEQAIEY-GTKMVGGV   73 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~-G~~vv~~V   73 (340)
                      +|+|.|++|.+|+.+++.|.+. |++++...
T Consensus         2 kvlVTGasG~iG~~l~~~L~~~~g~~V~~~~   32 (361)
T 1kew_A            2 KILITGGAGFIGSAVVRHIIKNTQDTVVNID   32 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEE
T ss_pred             EEEEECCCchHhHHHHHHHHhcCCCeEEEEe
Confidence            5889999999999999999887 78876443

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=88.59  E-value=0.51  Score=45.80  Aligned_cols=66  Identities=17%  Similarity=0.251  Sum_probs=41.0

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc-ee---cCccc--ccCHHHhhccCCCcEEEEecCh
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-EH---LGLPV--FNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~-~i---~G~p~--y~sl~dip~~~~vDlavi~vp~  109 (340)
                      ...+|+|+|+ |.+|+.+++.+...|.+.+..+|+..... +.   .|..+  |.++.++..  ..|+++.++|.
T Consensus       166 ~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~--~aDvVi~at~~  237 (404)
T 1gpj_A          166 HDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLA--RSDVVVSATAA  237 (404)
T ss_dssp             TTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHH--TCSEEEECCSS
T ss_pred             cCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhc--CCCEEEEccCC
Confidence            3456788899 99999999999999984344788764100 11   13222  234444443  36666666654

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=88.48  E-value=0.55  Score=42.38  Aligned_cols=85  Identities=24%  Similarity=0.392  Sum_probs=51.1

Q ss_pred             CcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHh
Q 019500          181 GRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKES  260 (340)
Q Consensus       181 G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~  260 (340)
                      .+|++|.-+|.+...-         ..+.+.  |...+.--++.+.|+.+.+||+.|+|+|.+++.|........+.+++
T Consensus         3 ~~iavi~i~G~I~~~~---------~~~~~~--~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~i~~~l   71 (240)
T 3rst_A            3 SKIAVLEVSGTIQDNG---------DSSSLL--GADGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKL   71 (240)
T ss_dssp             CEEEEEEEESCBCCC--------------------CCCCHHHHHHHHHHHHHCTTEEEEEEEEEECCBCHHHHHHHHHHH
T ss_pred             CeEEEEEEEEEEcCCC---------CcCccc--ccCCcCHHHHHHHHHHHHhCCCcEEEEEEecCCCCCHHHHHHHHHHH
Confidence            5688888888764321         001111  11211112355667777889999999999998665565555544443


Q ss_pred             C---C--CCCEEEEEeCCCCC
Q 019500          261 G---T--EKPIVAFIAGLTAP  276 (340)
Q Consensus       261 r---~--~KPVvvlk~Grs~~  276 (340)
                      +   .  +||||+.--|....
T Consensus        72 ~~~~~~~~kPVia~v~g~a~~   92 (240)
T 3rst_A           72 EEIKKETKKPIYVSMGSMAAS   92 (240)
T ss_dssp             HHHHHHHCCCEEEEEEEEEET
T ss_pred             HHHHHhCCCeEEEEECCeehH
Confidence            2   3  89999988775543

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=88.27  E-value=0.4  Score=45.62  Aligned_cols=62  Identities=18%  Similarity=0.254  Sum_probs=46.4

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce-ecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-HLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~-i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      ..|.|+|. |+.|+.+++.+..+|++++ ..+|...... -.+. .|.+++++..  ..|++++.+|-
T Consensus       142 ~tvGIiG~-G~IG~~va~~~~~fg~~v~-~~d~~~~~~~~~~~~-~~~~l~ell~--~sDivslh~Pl  204 (334)
T 3kb6_A          142 LTLGVIGT-GRIGSRVAMYGLAFGMKVL-CYDVVKREDLKEKGC-VYTSLDELLK--ESDVISLHVPY  204 (334)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCHHHHHTTC-EECCHHHHHH--HCSEEEECCCC
T ss_pred             cEEEEECc-chHHHHHHHhhcccCceee-ecCCccchhhhhcCc-eecCHHHHHh--hCCEEEEcCCC
Confidence            34667799 9999999999999999977 5677541011 1232 4679999987  48999999985

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=88.19  E-value=0.7  Score=41.67  Aligned_cols=86  Identities=16%  Similarity=0.144  Sum_probs=52.1

Q ss_pred             EEEeCCCCCcchHHHHHHHHcC-CeEEEeeCCCCCCc---eecCcccc------cCHHHhhcc---CCCcEEEEecChh-
Q 019500           45 VICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGGT---EHLGLPVF------NTVAEAKAE---TKANASAIYVPPP-  110 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~G-~~vv~~VnP~~~g~---~i~G~p~y------~sl~dip~~---~~vDlavi~vp~~-  110 (340)
                      |+|.|++|.+|+.+++.|.+.| ++++....... ..   ...++.+.      .+++++.+.   .++|++|-+.... 
T Consensus         2 vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~a~~~~   80 (310)
T 1eq2_A            2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD-GTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSS   80 (310)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSS-GGGGHHHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCCC
T ss_pred             EEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCC-CchhhhcCcceeccccccHHHHHHHHhccccCCCcEEEECccccc
Confidence            6788999999999999999999 77664433222 11   11122111      234444431   1489998875321 


Q ss_pred             ---------------hHHHHHHHHHHcCCcEEEEecC
Q 019500          111 ---------------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       111 ---------------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                                     ....+++.|.+.|+ .+|.+++
T Consensus        81 ~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS  116 (310)
T 1eq2_A           81 TTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASS  116 (310)
T ss_dssp             TTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEE
T ss_pred             CcccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEee
Confidence                           13567778888888 4454554

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=88.15  E-value=2.9  Score=38.24  Aligned_cols=88  Identities=17%  Similarity=0.149  Sum_probs=54.6

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEee-CCCCC----------C--cee----cCcccccCHHHhhccCCCcEEEE
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKG----------G--TEH----LGLPVFNTVAEAKAETKANASAI  105 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~V-nP~~~----------g--~~i----~G~p~y~sl~dip~~~~vDlavi  105 (340)
                      .+|+|.|++|-+|+.+++.|.+.|++++..+ ++...          +  ..+    ..+.-..++.++.+  .+|.++-
T Consensus         6 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~Vih   83 (337)
T 2c29_D            6 ETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIK--GCTGVFH   83 (337)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHT--TCSEEEE
T ss_pred             CEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHc--CCCEEEE
Confidence            3688999999999999999999999976443 33310          0  000    11222234555554  5898876


Q ss_pred             ecCh--------h---------hHHHHHHHHHHcC-CcEEEEecC
Q 019500          106 YVPP--------P---------FAAAAILEAMEAE-LDLVVCITE  132 (340)
Q Consensus       106 ~vp~--------~---------~v~~~v~ea~~~G-vk~vvi~t~  132 (340)
                      +..+        .         ....+++.|.+.+ ++.+|..++
T Consensus        84 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS  128 (337)
T 2c29_D           84 VATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSS  128 (337)
T ss_dssp             CCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECC
T ss_pred             eccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeee
Confidence            4311        1         1245667777777 888776665

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=88.11  E-value=0.85  Score=40.33  Aligned_cols=87  Identities=13%  Similarity=0.118  Sum_probs=49.9

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeC-CCCCCceecCcccccCHHHhhccCCCcEEEEecChh------------
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP------------  110 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~Vn-P~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~------------  110 (340)
                      +|+|.|++|.+|+.+++.|.+ |++++.... +.....-...+.-..++.++.+..++|++|-+....            
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~-g~~V~~~~r~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~   80 (273)
T 2ggs_A            2 RTLITGASGQLGIELSRLLSE-RHEVIKVYNSSEIQGGYKLDLTDFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKA   80 (273)
T ss_dssp             CEEEETTTSHHHHHHHHHHTT-TSCEEEEESSSCCTTCEECCTTSHHHHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHH
T ss_pred             EEEEECCCChhHHHHHHHHhc-CCeEEEecCCCcCCCCceeccCCHHHHHHHHHhcCCCEEEECCcccChhhhhhCHHHH
Confidence            478889999999999999985 888764332 211000011122222344444322489888775321            


Q ss_pred             ------hHHHHHHHHHHcCCcEEEEecC
Q 019500          111 ------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       111 ------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                            ....+++.|.+.|++ +|.+++
T Consensus        81 ~~~n~~~~~~l~~~~~~~~~~-iv~~SS  107 (273)
T 2ggs_A           81 YKINAEAVRHIVRAGKVIDSY-IVHIST  107 (273)
T ss_dssp             HHHHTHHHHHHHHHHHHTTCE-EEEEEE
T ss_pred             HHHhHHHHHHHHHHHHHhCCe-EEEEec
Confidence                  234567777777774 444554

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=88.02  E-value=1.8  Score=39.68  Aligned_cols=90  Identities=11%  Similarity=-0.010  Sum_probs=54.1

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcC-------CeEEEeeC-CCCC----Ccee----cCcccccCHHHhhccCCCcEEEE
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYG-------TKMVGGVT-PKKG----GTEH----LGLPVFNTVAEAKAETKANASAI  105 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G-------~~vv~~Vn-P~~~----g~~i----~G~p~y~sl~dip~~~~vDlavi  105 (340)
                      ..+|+|.|++|-+|+.+++.|.+.|       ++++.... +...    +..+    ..+.-..++.++.+ .++|++|-
T Consensus        14 ~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-~~~d~vih   92 (342)
T 2hrz_A           14 GMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLSAPGEAEKLVE-ARPDVIFH   92 (342)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCTTCCSEEEEEECCTTSTTHHHHHHH-TCCSEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCccccccCCceeEEEcCCCCHHHHHHHHh-cCCCEEEE
Confidence            3478899999999999999999989       67663322 2110    0111    12222334555543 25999988


Q ss_pred             ecChh-----------------hHHHHHHHHHHcC-----CcEEEEecC
Q 019500          106 YVPPP-----------------FAAAAILEAMEAE-----LDLVVCITE  132 (340)
Q Consensus       106 ~vp~~-----------------~v~~~v~ea~~~G-----vk~vvi~t~  132 (340)
                      +....                 ....+++.|.+.+     ++.+|.+++
T Consensus        93 ~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS  141 (342)
T 2hrz_A           93 LAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSS  141 (342)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_pred             CCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCc
Confidence            75421                 1234566666665     777666664

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=87.90  E-value=1.3  Score=39.06  Aligned_cols=27  Identities=15%  Similarity=0.196  Sum_probs=24.2

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEE
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMV   70 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv   70 (340)
                      .|+|.|+++.+|+.+++.|.+.|++++
T Consensus         3 ~vlVTGas~gIG~~~a~~l~~~G~~V~   29 (257)
T 1fjh_A            3 IIVISGCATGIGAATRKVLEAAGHQIV   29 (257)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEE
Confidence            467889999999999999999999966

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=87.87  E-value=0.67  Score=44.29  Aligned_cols=84  Identities=15%  Similarity=0.156  Sum_probs=56.1

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHH-cCCeEEEeeCCCCCC-ce----ec---C--cccccCHHHhhccCCCcEEEEecC
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG-TE----HL---G--LPVFNTVAEAKAETKANASAIYVP  108 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~-~G~~vv~~VnP~~~g-~~----i~---G--~p~y~sl~dip~~~~vDlavi~vp  108 (340)
                      ++..+|.|+|+ |.+|+.+++.+.. .+.+.+...|++... ++    +.   |  +..+.+++++..  +.|+++.++|
T Consensus       127 ~~~~~v~iIGa-G~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~--~aDiVi~aTp  203 (350)
T 1x7d_A          127 PNARKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVK--GVDIITTVTA  203 (350)
T ss_dssp             TTCCEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHT--TCSEEEECCC
T ss_pred             ccCCeEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHh--cCCEEEEecc
Confidence            45567888899 9999999888764 466656678876410 11    11   5  456789998876  5899999999


Q ss_pred             hhhHHHHH-HHHHHcCCcE
Q 019500          109 PPFAAAAI-LEAMEAELDL  126 (340)
Q Consensus       109 ~~~v~~~v-~ea~~~Gvk~  126 (340)
                      .....+++ .++++.|.+.
T Consensus       204 s~~~~pvl~~~~l~~G~~V  222 (350)
T 1x7d_A          204 DKAYATIITPDMLEPGMHL  222 (350)
T ss_dssp             CSSEEEEECGGGCCTTCEE
T ss_pred             CCCCCceecHHHcCCCCEE
Confidence            86322222 2455667654

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=87.87  E-value=2  Score=39.95  Aligned_cols=59  Identities=14%  Similarity=0.098  Sum_probs=37.9

Q ss_pred             EEEEeCCCCCcchHHHHHHHHc--CCeEEEeeCCCCCCceec--------C---------cccccCHHHhhccCCCcEEE
Q 019500           44 RVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGGTEHL--------G---------LPVFNTVAEAKAETKANASA  104 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~--G~~vv~~VnP~~~g~~i~--------G---------~p~y~sl~dip~~~~vDlav  104 (340)
                      +|+|+|+ |.+|..++..+.+.  |++++ .++.+.  +.+.        +         +....+.+++.   +.|+++
T Consensus         2 kI~VIGa-G~vG~~la~~la~~~~g~~V~-l~D~~~--~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~l~---~aDvVi   74 (310)
T 1guz_A            2 KITVIGA-GNVGATTAFRLAEKQLARELV-LLDVVE--GIPQGKALDMYESGPVGLFDTKVTGSNDYADTA---NSDIVI   74 (310)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECSSS--SHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGT---TCSEEE
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCCEEE-EEeCCh--hHHHHHHHhHHhhhhcccCCcEEEECCCHHHHC---CCCEEE
Confidence            5778899 99999988887774  66644 555433  1111        1         12224566643   489999


Q ss_pred             EecCh
Q 019500          105 IYVPP  109 (340)
Q Consensus       105 i~vp~  109 (340)
                      +++|.
T Consensus        75 iav~~   79 (310)
T 1guz_A           75 ITAGL   79 (310)
T ss_dssp             ECCSC
T ss_pred             EeCCC
Confidence            99964

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=87.85  E-value=1.3  Score=41.10  Aligned_cols=29  Identities=28%  Similarity=0.528  Sum_probs=25.3

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEe
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGG   72 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~   72 (340)
                      +|+|.|++|.+|+.+++.|.+.|++++..
T Consensus         3 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~   31 (372)
T 1db3_A            3 VALITGVTGQDGSYLAEFLLEKGYEVHGI   31 (372)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence            57889999999999999999999987643

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=87.81  E-value=1.5  Score=40.38  Aligned_cols=87  Identities=14%  Similarity=0.071  Sum_probs=52.4

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc--CCeEEEeeCCCCCC--c---ee--cCccc-------ccCHHHhhccCCCcEEEEe
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG--T---EH--LGLPV-------FNTVAEAKAETKANASAIY  106 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~--G~~vv~~VnP~~~g--~---~i--~G~p~-------y~sl~dip~~~~vDlavi~  106 (340)
                      .+|+|.|++|.+|+.+++.|.+.  |++++........+  .   ++  .++..       ..++.++.+  .+|++|-+
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vih~   82 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAA--KADAIVHY   82 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHT--TCSEEEEC
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhh--cCCEEEEC
Confidence            46889999999999999999987  88876443321100  0   11  12221       123445554  47988877


Q ss_pred             cChh------------------hHHHHHHHHHHcCCcEEEEecC
Q 019500          107 VPPP------------------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       107 vp~~------------------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      ....                  ....+++.|.+.|+ .+|.+++
T Consensus        83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~-~~v~~SS  125 (348)
T 1oc2_A           83 AAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVST  125 (348)
T ss_dssp             CSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEE
T ss_pred             CcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC-eEEEecc
Confidence            5321                  13456777778888 4454554

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=87.72  E-value=0.28  Score=51.44  Aligned_cols=87  Identities=15%  Similarity=0.042  Sum_probs=52.6

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee----------------cC-------------cccccCHHHh
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH----------------LG-------------LPVFNTVAEA   94 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i----------------~G-------------~p~y~sl~di   94 (340)
                      +|.|+|+ |.||..++.++.+.|++++ .+|++.  +.+                .|             +....+++++
T Consensus       316 kV~VIGa-G~MG~~iA~~la~aG~~V~-l~D~~~--~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~  391 (715)
T 1wdk_A          316 QAAVLGA-GIMGGGIAYQSASKGTPIL-MKDINE--HGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDF  391 (715)
T ss_dssp             SEEEECC-HHHHHHHHHHHHHTTCCEE-EECSSH--HHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTG
T ss_pred             EEEEECC-ChhhHHHHHHHHhCCCEEE-EEECCH--HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCHHHH
Confidence            4667799 9999999999999999855 555543  111                12             2233455333


Q ss_pred             hccCCCcEEEEecChhh--HHHHHHHHHHcC-CcEEE-EecCCCChh
Q 019500           95 KAETKANASAIYVPPPF--AAAAILEAMEAE-LDLVV-CITEGIPQH  137 (340)
Q Consensus        95 p~~~~vDlavi~vp~~~--v~~~v~ea~~~G-vk~vv-i~t~Gf~e~  137 (340)
                      .   +.|++|.++|.+.  -.+++.+..+.- -+.++ ..|++++.+
T Consensus       392 ~---~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~  435 (715)
T 1wdk_A          392 G---NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISIS  435 (715)
T ss_dssp             G---GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH
T ss_pred             C---CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHH
Confidence            3   4899999999654  334555543321 12333 246777644

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=87.13  E-value=0.38  Score=43.92  Aligned_cols=104  Identities=12%  Similarity=0.076  Sum_probs=61.6

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee---cCcccccCHHHhhccCCCcEEEEecChhhHH---HHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---LGLPVFNTVAEAKAETKANASAIYVPPPFAA---AAI  116 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i---~G~p~y~sl~dip~~~~vDlavi~vp~~~v~---~~v  116 (340)
                      +++|+|+ |.+|+.++..|.+.|.+.++.+|++... +++   .+...+.++.+..+  +.|++|.++|....+   .+-
T Consensus       110 ~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~--~aDiVInatp~gm~p~~~~i~  186 (253)
T 3u62_A          110 PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVK--KAKSLFNTTSVGMKGEELPVS  186 (253)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHH--TCSEEEECSSTTTTSCCCSCC
T ss_pred             eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhc--CCCEEEECCCCCCCCCCCCCC
Confidence            6888899 9999999999999998544478876410 111   12224567777665  489999999864321   111


Q ss_pred             HHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       117 ~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      .+.++.+ ..++-+..+  ++...   +.+ ++.|++ ++ ||
T Consensus       187 ~~~l~~~-~~V~Divy~--~T~ll---~~A-~~~G~~~~~-~G  221 (253)
T 3u62_A          187 DDSLKNL-SLVYDVIYF--DTPLV---VKA-RKLGVKHII-KG  221 (253)
T ss_dssp             HHHHTTC-SEEEECSSS--CCHHH---HHH-HHHTCSEEE-CT
T ss_pred             HHHhCcC-CEEEEeeCC--CcHHH---HHH-HHCCCcEEE-CC
Confidence            2334433 334444555  33322   222 455776 55 44

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=87.09  E-value=1.6  Score=40.21  Aligned_cols=33  Identities=18%  Similarity=0.235  Sum_probs=27.4

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEee
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGV   73 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~V   73 (340)
                      +..+|+|.|++|.+|+.+++.|.+.|++++...
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~   58 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVD   58 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEe
Confidence            345788999999999999999999999877443

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=87.03  E-value=1.9  Score=38.75  Aligned_cols=53  Identities=17%  Similarity=0.294  Sum_probs=27.9

Q ss_pred             cCCCCCCCCCCCCcccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC
Q 019500           21 CGQSRSFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT   74 (340)
Q Consensus        21 ~~~~~~~~~~~~~l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn   74 (340)
                      .|..++|++.+-.-..+..-+.-.++|.|+++.+|+.+++.|.+.|++++ .++
T Consensus        11 ~~~~~~~~~~~~~~~~m~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~-~~~   63 (279)
T 1xg5_A           11 SGRENLYFQGHMARPGMERWRDRLALVTGASGGIGAAVARALVQQGLKVV-GCA   63 (279)
T ss_dssp             ------------CCTTCGGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred             ccccceeeecccccccccccCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEE
Confidence            35566777664211112111223577889999999999999999999866 444

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=86.93  E-value=0.97  Score=41.97  Aligned_cols=89  Identities=15%  Similarity=0.113  Sum_probs=52.7

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcC-CeEEEeeCCCCCC--ceecCccc------ccCHHHhhcc---CCCcEEEEecChh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGG--TEHLGLPV------FNTVAEAKAE---TKANASAIYVPPP  110 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G-~~vv~~VnP~~~g--~~i~G~p~------y~sl~dip~~---~~vDlavi~vp~~  110 (340)
                      .+|+|.|++|.+|+.+++.|.+.| ++++.........  ..+.++.+      ..+++++.+.   .++|++|-+....
T Consensus        47 ~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~Vih~A~~~  126 (357)
T 2x6t_A           47 RMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACS  126 (357)
T ss_dssp             -CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGGGGGTTTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcchhhcccCceEeeecCcHHHHHHHHhhcccCCCCEEEECCccc
Confidence            457888999999999999999999 7766443322100  01112111      1234444431   1489998765321


Q ss_pred             ----------------hHHHHHHHHHHcCCcEEEEecC
Q 019500          111 ----------------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       111 ----------------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                                      ....+++.|.+.|+ .+|.+++
T Consensus       127 ~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~-r~V~~SS  163 (357)
T 2x6t_A          127 STTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASS  163 (357)
T ss_dssp             CTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEE
T ss_pred             CCccCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcc
Confidence                            23567778888888 4454554

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=86.90  E-value=1.8  Score=39.49  Aligned_cols=86  Identities=15%  Similarity=0.116  Sum_probs=51.5

Q ss_pred             EEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCce---ecCcccc--------cCHHHhhccCCCcEEEEecC---
Q 019500           44 RVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTE---HLGLPVF--------NTVAEAKAETKANASAIYVP---  108 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~---i~G~p~y--------~sl~dip~~~~vDlavi~vp---  108 (340)
                      +|+|.|++|.+|+.+++.|.+. |++++........-..   ..++..+        ..++++.+  ++|++|-+..   
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~~d~vih~A~~~~   79 (345)
T 2bll_A            2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVK--KCDVVLPLVAIAT   79 (345)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHH--HCSEEEECBCCCC
T ss_pred             eEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhcCCCeEEEeccccCcHHHHHhhcc--CCCEEEEcccccC
Confidence            5788999999999999999997 8987744332110000   1122221        12444444  4899887532   


Q ss_pred             hh---------------hHHHHHHHHHHcCCcEEEEecC
Q 019500          109 PP---------------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       109 ~~---------------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      +.               ....+++.|.+.| +.+|.+++
T Consensus        80 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~v~~SS  117 (345)
T 2bll_A           80 PIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPST  117 (345)
T ss_dssp             HHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECC
T ss_pred             ccchhcCHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEec
Confidence            11               1345677777888 66665665

>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*

Probab=86.71  E-value=1.7  Score=41.53  Aligned_cols=90  Identities=14%  Similarity=0.115  Sum_probs=62.9

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCC-----------------CCCCc--------eecC--cccc--cCH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTP-----------------KKGGT--------EHLG--LPVF--NTV   91 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP-----------------~~~g~--------~i~G--~p~y--~sl   91 (340)
                      .++|.|.|. |++|+.+.|.+.+. .+++++.-+.                 +..|+        .+.|  ++++  ++.
T Consensus         4 ~~kv~INGf-GrIGr~v~R~~~~~~~~~ivaind~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~inGk~I~v~~e~dp   82 (338)
T 3lvf_P            4 AVKVAINGF-GRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDA   82 (338)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSCG
T ss_pred             cEEEEEECC-CcHHHHHHHHHHHCCCceEEEEecCCCHHHHHHHhccCCCCCCcCCeEEEcCCEEEECCEEEEEEEeccc
Confidence            578999999 99999999987775 4667743221                 00010        1234  4455  457


Q ss_pred             HHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500           92 AEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus        92 ~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      +++|- +..+|+++-++......+-+...++.|.|.++|-.+
T Consensus        83 ~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISap  124 (338)
T 3lvf_P           83 SKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAP  124 (338)
T ss_dssp             GGSCTTTTTCSEEEECSSSCCBHHHHHHHHHTTCSEEEESSC
T ss_pred             ccCCccccCCCEEEEccCCcCCHHHHHHHHHcCCCEEEECCC
Confidence            77763 246999999999888888899999999998665333

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=86.64  E-value=0.85  Score=42.10  Aligned_cols=88  Identities=18%  Similarity=0.168  Sum_probs=51.0

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCC--eEEEeeCCCCCCce------ecCccc------c--cCHHHhhccCCCcEEEE
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTE------HLGLPV------F--NTVAEAKAETKANASAI  105 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~--~vv~~VnP~~~g~~------i~G~p~------y--~sl~dip~~~~vDlavi  105 (340)
                      ..+|+|+|+ |.+|......|.+.|+  +++ .++.+....+      -.+.+.      .  .+.+++.   +.|++++
T Consensus         7 ~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~aD~Vii   81 (319)
T 1lld_A            7 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIV-LEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICR---DADMVVI   81 (319)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGT---TCSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEE-EEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhC---CCCEEEE
Confidence            357888899 9999999988888887  654 5655420001      122221      1  1333332   5899999


Q ss_pred             ecChhhHH----------------HHHHHHHHcCCcE-EEEecCCC
Q 019500          106 YVPPPFAA----------------AAILEAMEAELDL-VVCITEGI  134 (340)
Q Consensus       106 ~vp~~~v~----------------~~v~ea~~~Gvk~-vvi~t~Gf  134 (340)
                      +++....+                +++++..+.+-+. +++++-|.
T Consensus        82 ~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~  127 (319)
T 1lld_A           82 TAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPV  127 (319)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCch
Confidence            99433222                5555555544443 44456555

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}

Probab=86.56  E-value=0.33  Score=46.77  Aligned_cols=92  Identities=12%  Similarity=0.055  Sum_probs=58.3

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCC----------CC-------------Cc--eecC--ccccc--C
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK----------KG-------------GT--EHLG--LPVFN--T   90 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~----------~~-------------g~--~i~G--~p~y~--s   90 (340)
                      +.+++|.|.|+ |++|+.+.+.+.+..+++++.-+|.          ++             ++  .+.|  ++++.  +
T Consensus        19 ~~~~kVaInGf-GrIGr~vlr~l~e~~~~ivaIndl~d~~~~a~llkydS~hG~f~~~v~~~~~~l~i~Gk~I~v~~~~d   97 (356)
T 3hja_A           19 PGSMKLAINGF-GRIGRNVFKIAFERGIDIVAINDLTDPKTLAHLLKYDSTFGVYNKKVESRDGAIVVDGREIKIIAERD   97 (356)
T ss_dssp             ---CEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSS
T ss_pred             CCCeEEEEECC-CHHHHHHHHHHHHCCCCEEEEeCCCCHHHhhhhhccccCCCCCCCCEEEcCCEEEECCEEEEEEEcCC
Confidence            45789999999 9999999999888888877543342          00             01  1334  34443  4


Q ss_pred             HHHhhc-cCCCcEEEEecChhhH----HHHHHHHHH-cCCcEEEEecC
Q 019500           91 VAEAKA-ETKANASAIYVPPPFA----AAAILEAME-AELDLVVCITE  132 (340)
Q Consensus        91 l~dip~-~~~vDlavi~vp~~~v----~~~v~ea~~-~Gvk~vvi~t~  132 (340)
                      .+++|- +..+|+++-++.....    .+-....++ .|.+.+||-.+
T Consensus        98 p~~i~w~~~gvDiV~esTG~f~s~~~~~e~a~~hl~~aGAkkVVIsap  145 (356)
T 3hja_A           98 PKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVILTVP  145 (356)
T ss_dssp             GGGCCHHHHTCSEEEECSSSCCSSCCTTCCGGGGTTTSCCSEEEESSC
T ss_pred             hhhCCccccCCCEEEEecccccccchhHHHHHHHHHhCCCeEEEECCC
Confidence            555542 2368999888766555    555566677 88887665444

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=86.56  E-value=0.79  Score=45.09  Aligned_cols=33  Identities=18%  Similarity=0.248  Sum_probs=27.9

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHc---CCeEEEee
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEY---GTKMVGGV   73 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~---G~~vv~~V   73 (340)
                      +..+|+|.|++|.+|+.+++.|.+.   |++++..+
T Consensus        72 ~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~  107 (478)
T 4dqv_A           72 ELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLV  107 (478)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEE
Confidence            4567899999999999999999988   88877544

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=86.50  E-value=2.3  Score=38.42  Aligned_cols=30  Identities=27%  Similarity=0.347  Sum_probs=26.1

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEee
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGV   73 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~V   73 (340)
                      +|+|.|++|.+|+.+++.|.+.|++++..+
T Consensus         3 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~   32 (322)
T 2p4h_X            3 RVCVTGGTGFLGSWIIKSLLENGYSVNTTI   32 (322)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             EEEEECChhHHHHHHHHHHHHCCCEEEEEE
Confidence            578889999999999999999999977544

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=86.31  E-value=2.5  Score=37.41  Aligned_cols=72  Identities=8%  Similarity=0.017  Sum_probs=46.4

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHHc-
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEA-  122 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~-  122 (340)
                      .|+|.|+++.+|+.+++.|.+.|++++ .++.+.  +....           ....+|    .+..+.+.++++++.+. 
T Consensus        24 ~vlITGas~gIG~~la~~l~~~G~~V~-~~~r~~--~~~~~-----------~~~~~d----~~d~~~v~~~~~~~~~~~   85 (251)
T 3orf_A           24 NILVLGGSGALGAEVVKFFKSKSWNTI-SIDFRE--NPNAD-----------HSFTIK----DSGEEEIKSVIEKINSKS   85 (251)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEE-EEESSC--CTTSS-----------EEEECS----CSSHHHHHHHHHHHHTTT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEE-EEeCCc--ccccc-----------cceEEE----eCCHHHHHHHHHHHHHHc
Confidence            577889999999999999999999966 444332  11110           000244    45667777788777765 


Q ss_pred             -CCcEEEEecCCC
Q 019500          123 -ELDLVVCITEGI  134 (340)
Q Consensus       123 -Gvk~vvi~t~Gf  134 (340)
                       ++.. +|...|.
T Consensus        86 g~iD~-li~~Ag~   97 (251)
T 3orf_A           86 IKVDT-FVCAAGG   97 (251)
T ss_dssp             CCEEE-EEECCCC
T ss_pred             CCCCE-EEECCcc
Confidence             3444 4456663

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=86.30  E-value=1.7  Score=40.28  Aligned_cols=81  Identities=16%  Similarity=0.122  Sum_probs=46.1

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCC--eEEEeeCCCCC---Cc--ee-cC------cccc-cCHHHhhccCCCcEEEEecC
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKG---GT--EH-LG------LPVF-NTVAEAKAETKANASAIYVP  108 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~--~vv~~VnP~~~---g~--~i-~G------~p~y-~sl~dip~~~~vDlavi~vp  108 (340)
                      +|+|+|+ |.+|...+..+...|+  +++ .++.+..   +.  ++ .+      .++. .+.+++.   +.|++|++++
T Consensus         2 kI~VIGa-G~vG~~la~~la~~g~~~eV~-L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~~---~aDvVIi~~~   76 (304)
T 2v6b_A            2 KVGVVGT-GFVGSTAAFALVLRGSCSELV-LVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSELA---DAQVVILTAG   76 (304)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGGT---TCSEEEECC-
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCCEEE-EEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHhC---CCCEEEEcCC
Confidence            6778899 9999998888888787  644 5554331   00  01 11      1121 2333433   4899999995


Q ss_pred             hhh----------------HHHHHHHHHHcCCcEEEE
Q 019500          109 PPF----------------AAAAILEAMEAELDLVVC  129 (340)
Q Consensus       109 ~~~----------------v~~~v~ea~~~Gvk~vvi  129 (340)
                      ...                ..++++++.+.+-+.+++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi  113 (304)
T 2v6b_A           77 ANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLL  113 (304)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHCSSSEEE
T ss_pred             CCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEE
Confidence            432                355666666665554433

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=86.28  E-value=0.65  Score=46.63  Aligned_cols=67  Identities=18%  Similarity=0.087  Sum_probs=47.6

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce---ecCcccccCHHHhhccCCCcEEEEecChhhHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAA  113 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~---i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~  113 (340)
                      ..+|+|+|+ |.+|..+++.++.+|.+++ .+++.....+   -.|.. +.+++++..  ..|+++++++.....
T Consensus       274 GktV~IiG~-G~IG~~~A~~lka~Ga~Vi-v~d~~~~~~~~A~~~Ga~-~~~l~e~l~--~aDvVi~atgt~~~i  343 (494)
T 3ce6_A          274 GKKVLICGY-GDVGKGCAEAMKGQGARVS-VTEIDPINALQAMMEGFD-VVTVEEAIG--DADIVVTATGNKDII  343 (494)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTTCE-ECCHHHHGG--GCSEEEECSSSSCSB
T ss_pred             cCEEEEEcc-CHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHcCCE-EecHHHHHh--CCCEEEECCCCHHHH
Confidence            345778898 9999999999999999855 6666531011   24654 346777765  589999999876643

>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A*

Probab=86.25  E-value=1.2  Score=42.48  Aligned_cols=89  Identities=16%  Similarity=0.048  Sum_probs=61.8

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc---CCeEEEeeCCCC-----------------CC------c--eecC--cccc--c
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKK-----------------GG------T--EHLG--LPVF--N   89 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~---G~~vv~~VnP~~-----------------~g------~--~i~G--~p~y--~   89 (340)
                      .++|.|.|. |++|+.+.|.+.+.   ..++++.-+|..                 .|      +  .+.|  ++++  +
T Consensus         2 ~~kv~INGf-GrIGr~v~Ra~~~~~~~~~~ivaiNd~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~   80 (335)
T 3doc_A            2 AVRVAINGF-GRIGRNILRAIVESGRTDIQVVAINDLGPVETNAHLLRYDSVHGRFPKEVEVAGDTIDVGYGPIKVHAVR   80 (335)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTTCCSEEEEEEECSSCHHHHHHHHHEETTTEECSSCCEECSSEEESSSSEEEEECCS
T ss_pred             CEEEEEECC-CcHHHHHHHHHHhccCCCeEEEEEeCCCCHHHHHHHhcccCCCCCCCCeEEEecCEEEECCEEEEEEeec
Confidence            468999999 99999999988775   456775444411                 00      0  1233  3454  3


Q ss_pred             CHHHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEec
Q 019500           90 TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCIT  131 (340)
Q Consensus        90 sl~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t  131 (340)
                      +.+++|- +.++|+++-++......+-....++.|.|.++|-.
T Consensus        81 dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsa  123 (335)
T 3doc_A           81 NPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVIVSA  123 (335)
T ss_dssp             STTSSCTTTTTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESS
T ss_pred             ccccccccccCCCEEEEccCccCCHHHHHHHHHcCCCEEEECC
Confidence            4666652 23699999999888888888999999999866533

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=86.08  E-value=2.1  Score=40.21  Aligned_cols=32  Identities=16%  Similarity=0.056  Sum_probs=26.4

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEe
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGG   72 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~   72 (340)
                      +..+|+|.|++|-+|+.+++.|.+.|++++..
T Consensus        10 ~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~   41 (404)
T 1i24_A           10 HGSRVMVIGGDGYCGWATALHLSKKNYEVCIV   41 (404)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEE
Confidence            45578899999999999999999999987743

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=86.00  E-value=0.62  Score=48.86  Aligned_cols=87  Identities=11%  Similarity=-0.041  Sum_probs=52.4

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee----------------cC-------------cccccCHHHh
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH----------------LG-------------LPVFNTVAEA   94 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i----------------~G-------------~p~y~sl~di   94 (340)
                      +|.|+|+ |.||..++.++.+.|++++ .+|.+.  +.+                .|             +....+++++
T Consensus       314 kV~VIGa-G~MG~~iA~~la~aG~~V~-l~D~~~--~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~  389 (725)
T 2wtb_A          314 KVAIIGG-GLMGSGIATALILSNYPVI-LKEVNE--KFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESF  389 (725)
T ss_dssp             CEEEECC-SHHHHHHHHHHHTTTCCEE-EECSSH--HHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSGGG
T ss_pred             EEEEEcC-CHhhHHHHHHHHhCCCEEE-EEECCH--HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHHHH
Confidence            4667799 9999999999999999855 555432  111                11             2233455443


Q ss_pred             hccCCCcEEEEecChhh--HHHHHHHHHHcC-CcEEE-EecCCCChh
Q 019500           95 KAETKANASAIYVPPPF--AAAAILEAMEAE-LDLVV-CITEGIPQH  137 (340)
Q Consensus        95 p~~~~vDlavi~vp~~~--v~~~v~ea~~~G-vk~vv-i~t~Gf~e~  137 (340)
                      .   +.|++|.++|.+.  ..+++.+..+.- -+.++ .-|++++.+
T Consensus       390 ~---~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~  433 (725)
T 2wtb_A          390 R---DVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLN  433 (725)
T ss_dssp             T---TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH
T ss_pred             C---CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHH
Confidence            3   4899999999875  234545443321 22233 346677644

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=85.66  E-value=3  Score=37.99  Aligned_cols=88  Identities=9%  Similarity=0.018  Sum_probs=51.9

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcC--CeEEEeeCCC-CCC-cee------cCccc-------ccCHHHhhccCCCcEEEE
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPK-KGG-TEH------LGLPV-------FNTVAEAKAETKANASAI  105 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G--~~vv~~VnP~-~~g-~~i------~G~p~-------y~sl~dip~~~~vDlavi  105 (340)
                      ++|+|.|++|.+|+.+++.|.+.|  ++++...... ... +.+      .++..       ..++.++..  ++|++|-
T Consensus         4 m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vih   81 (336)
T 2hun_A            4 MKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVR--KVDGVVH   81 (336)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHH--TCSEEEE
T ss_pred             CeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhh--CCCEEEE
Confidence            468899999999999999999876  7766433211 100 111      11211       123444443  5899887


Q ss_pred             ecChh------------------hHHHHHHHHHHcCC-cEEEEecC
Q 019500          106 YVPPP------------------FAAAAILEAMEAEL-DLVVCITE  132 (340)
Q Consensus       106 ~vp~~------------------~v~~~v~ea~~~Gv-k~vvi~t~  132 (340)
                      +....                  ....+++.|.+.+. +.+|.+++
T Consensus        82 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS  127 (336)
T 2hun_A           82 LAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVST  127 (336)
T ss_dssp             CCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred             CCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecc
Confidence            65421                  13356677777775 46565554

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=85.49  E-value=1.4  Score=38.35  Aligned_cols=28  Identities=18%  Similarity=0.241  Sum_probs=24.8

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEE
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVG   71 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~   71 (340)
                      +|+|.|++|.+|+.+++.|.+.|++++.
T Consensus         3 ~vlVtGasg~iG~~l~~~L~~~g~~V~~   30 (255)
T 2dkn_A            3 VIAITGSASGIGAALKELLARAGHTVIG   30 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEEeCCCcHHHHHHHHHHHhCCCEEEE
Confidence            4788999999999999999999998663

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=85.08  E-value=0.92  Score=40.42  Aligned_cols=53  Identities=15%  Similarity=0.215  Sum_probs=42.3

Q ss_pred             HHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCCCC
Q 019500          224 VDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIAGLTAP  276 (340)
Q Consensus       224 ~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvvlk~Grs~~  276 (340)
                      .+.|+++.+|+..+.|.||+.+.|-....+....++++ .+|||+++-.|....
T Consensus        63 ~~~L~~l~~~~~~k~I~l~InSPGG~v~ag~~I~~~i~~~~~pV~t~v~G~AaS  116 (218)
T 1y7o_A           63 IAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAAS  116 (218)
T ss_dssp             HHHHHHHHHHCTTSCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEEEEEET
T ss_pred             HHHHHHHHhcCCCCCEEEEEECcCCCHHHHHHHHHHHHhcCCCEEEEEccEeHH
Confidence            34566778889999999999987766778888887776 789999999875543

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=85.06  E-value=1.1  Score=42.22  Aligned_cols=80  Identities=13%  Similarity=0.162  Sum_probs=54.3

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHH-cCCeEEEeeCCCCCC-ce----e----cCcccccCHHHhhccCCCcEEEEecCh
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG-TE----H----LGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~-~G~~vv~~VnP~~~g-~~----i----~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      ++..+|.|+|+ |.+|+.+++.+.+ .+.+.++..|+.... ++    .    ..+. +.+++++. +  .|+++.+||.
T Consensus       123 ~~~~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~--aDvVi~aTp~  197 (322)
T 1omo_A          123 KNSSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-R--CDVLVTTTPS  197 (322)
T ss_dssp             TTCCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-S--SSEEEECCCC
T ss_pred             CCCCEEEEEcC-cHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-C--CCEEEEeeCC
Confidence            45667888899 9999999998887 466666688876411 11    1    1244 78888877 4  8999999997


Q ss_pred             hhHHHHH-HHHHHcCCcE
Q 019500          110 PFAAAAI-LEAMEAELDL  126 (340)
Q Consensus       110 ~~v~~~v-~ea~~~Gvk~  126 (340)
                      ..  +++ .++++.|.+.
T Consensus       198 ~~--pv~~~~~l~~G~~V  213 (322)
T 1omo_A          198 RK--PVVKAEWVEEGTHI  213 (322)
T ss_dssp             SS--CCBCGGGCCTTCEE
T ss_pred             CC--ceecHHHcCCCeEE
Confidence            53  223 3455666544

>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis}

Probab=85.00  E-value=1.5  Score=42.02  Aligned_cols=90  Identities=18%  Similarity=0.113  Sum_probs=63.8

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCC-----------------CC------c--eecC--cccc--cCH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK-----------------GG------T--EHLG--LPVF--NTV   91 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~-----------------~g------~--~i~G--~p~y--~sl   91 (340)
                      +++|.|.|. |++|+.+.|.+.+. ..++++.-+|..                 .|      +  .+.|  ++++  ++.
T Consensus         4 ~~kv~INGf-GrIGr~v~Ra~~~~~~~~ivaINd~~d~~~~a~llkyDS~hG~f~~~v~~~~~~l~inGk~I~v~~e~dp   82 (345)
T 4dib_A            4 MTRVAINGF-GRIGRMVFRQAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKMIRLLNNRDP   82 (345)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHTTCSSSEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEEECCSCG
T ss_pred             cEEEEEECC-CcHHHHHHHHHHhCCCceEEEEcCCCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEECCEEEEEeecCCh
Confidence            578999999 99999999987775 577885444421                 00      0  1234  3455  457


Q ss_pred             HHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500           92 AEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus        92 ~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      +++|- +..+|+++-++......+-....++.|.|.++|-.+
T Consensus        83 ~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISap  124 (345)
T 4dib_A           83 KELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILTAP  124 (345)
T ss_dssp             GGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             hhCCccccCccEEEEeccCcCCHHHHHHHHHCCCCEEEECCC
Confidence            77763 236999999998888888889999999998765433

>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O

Probab=84.80  E-value=1.5  Score=41.93  Aligned_cols=89  Identities=15%  Similarity=0.073  Sum_probs=61.6

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCC-----------C-------CC-c---------eecC--cccc--
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPK-----------K-------GG-T---------EHLG--LPVF--   88 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~-----------~-------~g-~---------~i~G--~p~y--   88 (340)
                      .++|.|.|. |++|+.+.|.+.+. ..++++.-+|.           +       .| +         .+.|  ++++  
T Consensus         3 ~~kv~INGf-GrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~~v~~~~~~~l~i~Gk~I~v~~e   81 (337)
T 3v1y_O            3 KIKIGINGF-GRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGI   81 (337)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECTTSCHHHHHHHHHCCTTTCCCCSSCEEEEETTEEEETTEEEEEECC
T ss_pred             ceEEEEECC-ChHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhhhccCCCcccCceEEEcCCcEEEECCEEEEEEEe
Confidence            478999999 99999999988775 46778555561           1       11 0         1223  3444  


Q ss_pred             cCHHHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEec
Q 019500           89 NTVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCIT  131 (340)
Q Consensus        89 ~sl~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t  131 (340)
                      .+.+++|- +..+|+++-++......+-....++.|.|.++|-.
T Consensus        82 ~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsa  125 (337)
T 3v1y_O           82 RNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISA  125 (337)
T ss_dssp             SSGGGCCHHHHTCCEEEECSSSCCSHHHHTHHHHTTCCEEEESS
T ss_pred             cCcccCCccccCCcEEEEeccccCCHHHHHHHHHcCCCEEEECC
Confidence            34666552 12689999999888888888889999999866433

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=84.01  E-value=0.99  Score=44.66  Aligned_cols=69  Identities=16%  Similarity=0.118  Sum_probs=47.5

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC----------ceecCcccccC-HHHhhccCCCcEEEEecCh
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG----------TEHLGLPVFNT-VAEAKAETKANASAIYVPP  109 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g----------~~i~G~p~y~s-l~dip~~~~vDlavi~vp~  109 (340)
                      ..++|+|+|+ |+.|+.+++.|.+.|++++ .|+.+..-          ..+.|-.+.++ |.+.-- .+.|+++.+++.
T Consensus         2 ~~M~iiI~G~-G~vG~~la~~L~~~~~~v~-vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi-~~ad~~ia~t~~   78 (461)
T 4g65_A            2 NAMKIIILGA-GQVGGTLAENLVGENNDIT-IVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGA-QDADMLVAVTNT   78 (461)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHTCSTTEEEE-EEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTT-TTCSEEEECCSC
T ss_pred             CcCEEEEECC-CHHHHHHHHHHHHCCCCEE-EEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCC-CcCCEEEEEcCC
Confidence            4678999999 9999999999998898866 67655310          11334344433 555432 268999999988


Q ss_pred             hhH
Q 019500          110 PFA  112 (340)
Q Consensus       110 ~~v  112 (340)
                      +.+
T Consensus        79 De~   81 (461)
T 4g65_A           79 DET   81 (461)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            765

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=83.82  E-value=1.1  Score=41.43  Aligned_cols=86  Identities=10%  Similarity=-0.002  Sum_probs=51.7

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcC-----CeEEEeeCCCCCCc-eecCccc-------ccCHHHhhccCC-CcEEEEecC
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYG-----TKMVGGVTPKKGGT-EHLGLPV-------FNTVAEAKAETK-ANASAIYVP  108 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G-----~~vv~~VnP~~~g~-~i~G~p~-------y~sl~dip~~~~-vDlavi~vp  108 (340)
                      .+|+|.|++|.+|+.+++.|.+.|     ++++.......... .-.++..       ..++.++.+... +|+++-+..
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d~vih~a~   81 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPDDSQAKLSPLTDVTHVFYVTW   81 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSCCCSSCCEEEECCTTSHHHHHHHHTTCTTCCEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccccccCceEEEEeecCCHHHHHHHHhcCCCCCEEEECCC
Confidence            368889999999999999999888     88775443221100 0012221       223445444222 899988743


Q ss_pred             h-------------hhHHHHHHHHHHc--CCcEEE
Q 019500          109 P-------------PFAAAAILEAMEA--ELDLVV  128 (340)
Q Consensus       109 ~-------------~~v~~~v~ea~~~--Gvk~vv  128 (340)
                      .             .....+++.|.+.  +++.++
T Consensus        82 ~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v  116 (364)
T 2v6g_A           82 ANRSTEQENCEANSKMFRNVLDAVIPNCPNLKHIS  116 (364)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEE
T ss_pred             CCcchHHHHHHHhHHHHHHHHHHHHHhccccceEE
Confidence            1             2245566667666  788765

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=83.75  E-value=7.4  Score=34.59  Aligned_cols=29  Identities=17%  Similarity=0.169  Sum_probs=25.3

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEE
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMV   70 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv   70 (340)
                      .-.++|.|+++.+|+.+++.|.+.|++++
T Consensus        34 ~k~vlITGasggIG~~la~~L~~~G~~V~   62 (279)
T 3ctm_A           34 GKVASVTGSSGGIGWAVAEAYAQAGADVA   62 (279)
T ss_dssp             TCEEEETTTTSSHHHHHHHHHHHHTCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence            34578899999999999999999999966

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=83.62  E-value=1.2  Score=39.32  Aligned_cols=66  Identities=15%  Similarity=0.182  Sum_probs=48.4

Q ss_pred             EeecCCCCCCCCC---HHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCCCC
Q 019500          210 CVGIGGDPFNGTN---FVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIAGLTAP  276 (340)
Q Consensus       210 ~vs~Gn~a~~dv~---~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvvlk~Grs~~  276 (340)
                      +|-+++.. .+.+   +.+.|.++.+|+..+.|.+|+.+.|-....+....++++ .+|||+++-.|....
T Consensus        29 ii~l~G~I-~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPGG~v~a~~~I~~~i~~~~~pV~~~v~g~AaS   98 (208)
T 2cby_A           29 IIFLGSEV-NDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAAS   98 (208)
T ss_dssp             EEEECSCB-CHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHCSSCEEEEEEEEEET
T ss_pred             EEEEcCEE-CHHHHHHHHHHHHHHHhCCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEECcEeHH
Confidence            46666653 2222   344455668889999999999998877888888888876 679999998775443

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=83.53  E-value=31  Score=36.28  Aligned_cols=225  Identities=13%  Similarity=0.109  Sum_probs=113.5

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee-cCcc-cc--c--C----HHHhhccCCCcEEEEecChhh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-LGLP-VF--N--T----VAEAKAETKANASAIYVPPPF  111 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i-~G~p-~y--~--s----l~dip~~~~vDlavi~vp~~~  111 (340)
                      .-+|+|.|++|..|...++..+..|.+++..+.+.+. +.. .|.. ++  .  +    +.++.....+|+++.++..+.
T Consensus       346 G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~k~-~~l~lga~~v~~~~~~~~~~~i~~~t~g~GvDvVld~~gg~~  424 (795)
T 3slk_A          346 GESLLVHSAAGGVGMAAIQLARHLGAEVYATASEDKW-QAVELSREHLASSRTCDFEQQFLGATGGRGVDVVLNSLAGEF  424 (795)
T ss_dssp             TCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGGGG-GGSCSCGGGEECSSSSTHHHHHHHHSCSSCCSEEEECCCTTT
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChHHh-hhhhcChhheeecCChhHHHHHHHHcCCCCeEEEEECCCcHH
Confidence            3468889999999999999988899987755443320 111 2211 11  1  2    223322236999999998876


Q ss_pred             HHHHHHHHHHcCCcEEEEecCCCCh---------------------------hhHHHHHHHHhccCCcEEEccCCCCccc
Q 019500          112 AAAAILEAMEAELDLVVCITEGIPQ---------------------------HDMVRVKAALNNQSKTRLVGPNCPGVIK  164 (340)
Q Consensus       112 v~~~v~ea~~~Gvk~vvi~t~Gf~e---------------------------~~~~~l~~~aar~~girviGPNc~Gi~~  164 (340)
                      .... -+|++.+=+.+.+.......                           +...++.+.. ++..++.+=-....+-.
T Consensus       425 ~~~~-l~~l~~~Gr~v~iG~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~l~-~~g~l~p~~~~~~~l~~  502 (795)
T 3slk_A          425 ADAS-LRMLPRGGRFLELGKTDVRDPVEVADAHPGVSYQAFDTVEAGPQRIGEMLHELVELF-EGRVLEPLPVTAWDVRQ  502 (795)
T ss_dssp             THHH-HTSCTTCEEEEECCSTTCCCHHHHHHHSSSEEEEECCGGGGHHHHHHHHHHHHHHHH-HTTSCCCCCEEEEEGGG
T ss_pred             HHHH-HHHhcCCCEEEEeccccccCcccccccCCCCEEEEeeccccCHHHHHHHHHHHHHHH-HcCCcCCCcceeEcHHH
Confidence            6443 45555554443322211100                           0112222333 23333211000000000


Q ss_pred             CC-Cc----------ccccCCCCCCCCCcEEEEe-cChHHHHHHHHHHH-hCCCCceEEeecCCCCCCCCCHHHHHHHhh
Q 019500          165 PG-EC----------KIGIMPGYIHKPGRIGIVS-RSGTLTYEAVFQTT-AVGLGQSTCVGIGGDPFNGTNFVDCVTKFI  231 (340)
Q Consensus       165 p~-~~----------~~~~~~~~~~~~G~valvS-QSG~l~~~~~~~~~-~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~  231 (340)
                      -. -+          .+-+..+..+.+|.+.+|+ -+|+++.++..|+. ++|.  .+++-++-..-..-...++++.+.
T Consensus       503 ~~eA~~~l~~g~~~GKvVl~~~~~~~~~~~~lItGg~~GlG~aiA~~la~~~Ga--~~vvl~~R~~~~~~~~~~~~~~l~  580 (795)
T 3slk_A          503 APEALRHLSQARHVGKLVLTMPPVWDAAGTVLVTGGTGALGAEVARHLVIERGV--RNLVLVSRRGPAASGAAELVAQLT  580 (795)
T ss_dssp             HHHHHHHHHHTCCCBEEEEECCCCCCTTSEEEEETTTSHHHHHHHHHHHHTSSC--CEEEEEESSGGGSTTHHHHHHHHH
T ss_pred             HHHHHHHHhcCCccceEEEecCcccccccceeeccCCCCcHHHHHHHHHHHcCC--cEEEEeccCccchHHHHHHHHHHH
Confidence            00 00          0001112236788888887 56899999999887 5654  333333221000234567777775


Q ss_pred             cCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCE--EEEEeCCC
Q 019500          232 ADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPI--VAFIAGLT  274 (340)
Q Consensus       232 ~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPV--vvlk~Grs  274 (340)
                      +. ..++..+.+.. . ...+.+++++.+...-||  ++.-+|-.
T Consensus       581 ~~-G~~v~~~~~Dv-s-d~~~v~~~~~~~~~~~~id~lVnnAGv~  622 (795)
T 3slk_A          581 AY-GAEVSLQACDV-A-DRETLAKVLASIPDEHPLTAVVHAAGVL  622 (795)
T ss_dssp             HT-TCEEEEEECCT-T-CHHHHHHHHHTSCTTSCEEEEEECCCCC
T ss_pred             hc-CCcEEEEEeec-C-CHHHHHHHHHHHHHhCCCEEEEECCCcC
Confidence            53 45666555553 1 255667777766522265  44445543

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=83.53  E-value=0.84  Score=43.96  Aligned_cols=79  Identities=13%  Similarity=0.075  Sum_probs=49.2

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee------cCcccccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH------LGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i------~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~  115 (340)
                      ..+|+|+|+ |++|...++.|.+.|.+++ ..|+..  +.+      .|... -+.+++.. .+.|+++.+.....+-. 
T Consensus       173 GktV~V~G~-G~VG~~~A~~L~~~GakVv-v~D~~~--~~l~~~a~~~ga~~-v~~~~ll~-~~~DIvip~a~~~~I~~-  245 (364)
T 1leh_A          173 GLAVSVQGL-GNVAKALCKKLNTEGAKLV-VTDVNK--AAVSAAVAEEGADA-VAPNAIYG-VTCDIFAPCALGAVLND-  245 (364)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCH--HHHHHHHHHHCCEE-CCGGGTTT-CCCSEEEECSCSCCBST-
T ss_pred             cCEEEEECc-hHHHHHHHHHHHHCCCEEE-EEcCCH--HHHHHHHHHcCCEE-EChHHHhc-cCCcEeeccchHHHhCH-
Confidence            345778899 9999999999999999977 777654  221      13322 24455544 25899988754433211 


Q ss_pred             HHHHHHcCCcEEE
Q 019500          116 ILEAMEAELDLVV  128 (340)
Q Consensus       116 v~ea~~~Gvk~vv  128 (340)
                       +.+...+.+.++
T Consensus       246 -~~~~~lg~~iV~  257 (364)
T 1leh_A          246 -FTIPQLKAKVIA  257 (364)
T ss_dssp             -THHHHCCCSEEC
T ss_pred             -HHHHhCCCcEEE
Confidence             123334777644

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=83.43  E-value=2.3  Score=38.32  Aligned_cols=35  Identities=17%  Similarity=0.148  Sum_probs=28.0

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~   77 (340)
                      ..+|+|+|+ |..|..++++|...|...+..+|+..
T Consensus        28 ~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           28 DSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             TCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             cCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            446788899 78999999999999987555777653

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=83.41  E-value=4.4  Score=35.33  Aligned_cols=32  Identities=9%  Similarity=0.069  Sum_probs=26.6

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCC
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP   75 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP   75 (340)
                      -.++|.|+++.+|+.+++.|.+.|++++ .++.
T Consensus        12 k~vlITGasggiG~~la~~l~~~G~~V~-~~~r   43 (254)
T 2wsb_A           12 ACAAVTGAGSGIGLEICRAFAASGARLI-LIDR   43 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence            3578889999999999999999999866 4443

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=83.07  E-value=4.3  Score=38.49  Aligned_cols=116  Identities=14%  Similarity=0.100  Sum_probs=61.3

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceec-----------CcccccCHHHhhccCCCcEEEEecChh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL-----------GLPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~-----------G~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      ..+|+|+|+ |..|..++++|...|..-+..+|+..-..+-.           |.+--..+.+-..+.++++-+.+.+..
T Consensus        36 ~~~VlivG~-GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~  114 (346)
T 1y8q_A           36 ASRVLLVGL-KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTED  114 (346)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECSC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEecc
Confidence            456788899 78999999999999987555787754211111           211111122222222455545444432


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcc
Q 019500          111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVI  163 (340)
Q Consensus       111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~  163 (340)
                      ... ...+.. .+...+| .+.. +.+....+.+.+ +++++.++--.+.|+.
T Consensus       115 ~~~-~~~~~~-~~~dvVv-~~~d-~~~~r~~ln~~~-~~~~ip~i~~~~~G~~  162 (346)
T 1y8q_A          115 IEK-KPESFF-TQFDAVC-LTCC-SRDVIVKVDQIC-HKNSIKFFTGDVFGYH  162 (346)
T ss_dssp             GGG-CCHHHH-TTCSEEE-EESC-CHHHHHHHHHHH-HHTTCEEEEEEEEBTE
T ss_pred             cCc-chHHHh-cCCCEEE-EcCC-CHHHHHHHHHHH-HHcCCCEEEEeecccE
Confidence            211 112222 3566654 3432 223334455555 7788888766666654

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=82.58  E-value=0.86  Score=45.58  Aligned_cols=64  Identities=14%  Similarity=0.007  Sum_probs=45.8

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc---eecCcccccCHHHhhccCCCcEEEEecChhhH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPFA  112 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v  112 (340)
                      +|.|+|. |++|+.+++.++.+|++++ .+||.....   .-.|+. +.+++++..  ..|++++++.....
T Consensus       259 tVgIIG~-G~IG~~vA~~l~~~G~~Vi-v~d~~~~~~~~a~~~g~~-~~~l~ell~--~aDiVi~~~~t~~l  325 (479)
T 1v8b_A          259 IVVICGY-GDVGKGCASSMKGLGARVY-ITEIDPICAIQAVMEGFN-VVTLDEIVD--KGDFFITCTGNVDV  325 (479)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCEEE-EECSCHHHHHHHHTTTCE-ECCHHHHTT--TCSEEEECCSSSSS
T ss_pred             EEEEEee-CHHHHHHHHHHHhCcCEEE-EEeCChhhHHHHHHcCCE-ecCHHHHHh--cCCEEEECCChhhh
Confidence            4667798 9999999999999999866 677654100   123554 357988876  58999999744443

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=82.34  E-value=3.3  Score=38.67  Aligned_cols=78  Identities=22%  Similarity=0.204  Sum_probs=49.0

Q ss_pred             eEEEEeCCCCCcchH-HHHHHHHcCCeEEEeeCCCCCCc-----eecCccccc--CHHHhh-ccCCCcEEEEe--cChhh
Q 019500           43 TRVICQGITGKNGTF-HTEQAIEYGTKMVGGVTPKKGGT-----EHLGLPVFN--TVAEAK-AETKANASAIY--VPPPF  111 (340)
Q Consensus        43 iaViVvGasgk~G~~-v~~~l~~~G~~vv~~VnP~~~g~-----~i~G~p~y~--sl~dip-~~~~vDlavi~--vp~~~  111 (340)
                      .+|.++|. |..|-. +++.|.+.|+++. +.|.+....     +-.|++++.  +-+++. .  ++|++|+.  +|++.
T Consensus         5 ~~i~~iGi-Gg~Gms~~A~~L~~~G~~V~-~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~--~~d~vV~Spgi~~~~   80 (326)
T 3eag_A            5 KHIHIIGI-GGTFMGGLAAIAKEAGFEVS-GCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEF--KADVYVIGNVAKRGM   80 (326)
T ss_dssp             CEEEEESC-CSHHHHHHHHHHHHTTCEEE-EEESSCCTTHHHHHHHTTCEEEESCCGGGGGSC--CCSEEEECTTCCTTC
T ss_pred             cEEEEEEE-CHHHHHHHHHHHHhCCCEEE-EEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCC--CCCEEEECCCcCCCC
Confidence            45677799 888874 7788889999855 555432101     124777763  445554 3  48998875  34432


Q ss_pred             HHHHHHHHHHcCCcE
Q 019500          112 AAAAILEAMEAELDL  126 (340)
Q Consensus       112 v~~~v~ea~~~Gvk~  126 (340)
                        +.+++|.++|++.
T Consensus        81 --p~~~~a~~~gi~v   93 (326)
T 3eag_A           81 --DVVEAILNLGLPY   93 (326)
T ss_dssp             --HHHHHHHHTTCCE
T ss_pred             --HHHHHHHHcCCcE
Confidence              4567777777764

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=82.17  E-value=2.8  Score=38.95  Aligned_cols=82  Identities=11%  Similarity=0.062  Sum_probs=49.1

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCC-eEEEeeCCCCCCceec---------------C--cccccCHHHhhccCCCcEEE
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGGTEHL---------------G--LPVFNTVAEAKAETKANASA  104 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~-~vv~~VnP~~~g~~i~---------------G--~p~y~sl~dip~~~~vDlav  104 (340)
                      .+|.|+|+ |.+|...+..+...|. + +..+|.+.  +...               .  +..+.+.+++.   +.|++|
T Consensus         3 ~kI~VIGa-G~vG~~~a~~la~~g~~~-v~L~Di~~--~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~~---~aD~Vi   75 (309)
T 1ur5_A            3 KKISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVE--GVPQGKALDLYEASPIEGFDVRVTGTNNYADTA---NSDVIV   75 (309)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCSE-EEEECSSS--SHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGT---TCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEeCCc--cHHHHHHHhHHHhHhhcCCCeEEEECCCHHHHC---CCCEEE
Confidence            36788899 9999998888888785 7 44666443  1111               1  11124554443   489999


Q ss_pred             EecCh----------------hhHHHHHHHHHHcCCcEEEEec
Q 019500          105 IYVPP----------------PFAAAAILEAMEAELDLVVCIT  131 (340)
Q Consensus       105 i~vp~----------------~~v~~~v~ea~~~Gvk~vvi~t  131 (340)
                      ++++.                ....++.+++.+.+.+.++++.
T Consensus        76 ~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~  118 (309)
T 1ur5_A           76 VTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMV  118 (309)
T ss_dssp             ECCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEEC
T ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEc
Confidence            99732                2223455555555666554444

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=82.16  E-value=0.71  Score=46.37  Aligned_cols=64  Identities=14%  Similarity=0.016  Sum_probs=45.8

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc---eecCcccccCHHHhhccCCCcEEEEecChhh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPF  111 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~  111 (340)
                      .+|.|+|. |++|+.+++.+..+|.+++ .+||.....   .-.|.. +.+++++..  ..|++++++....
T Consensus       278 ktVgIIG~-G~IG~~vA~~l~~~G~~V~-v~d~~~~~~~~a~~~G~~-~~~l~ell~--~aDiVi~~~~t~~  344 (494)
T 3d64_A          278 KIAVVAGY-GDVGKGCAQSLRGLGATVW-VTEIDPICALQAAMEGYR-VVTMEYAAD--KADIFVTATGNYH  344 (494)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTTCEEE-EECSCHHHHHHHHTTTCE-ECCHHHHTT--TCSEEEECSSSSC
T ss_pred             CEEEEEcc-CHHHHHHHHHHHHCCCEEE-EEeCChHhHHHHHHcCCE-eCCHHHHHh--cCCEEEECCCccc
Confidence            35677798 9999999999999999865 667654100   123554 347988876  5899999985443

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=81.84  E-value=1.5  Score=38.06  Aligned_cols=53  Identities=13%  Similarity=0.096  Sum_probs=42.2

Q ss_pred             HHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCCCC
Q 019500          224 VDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIAGLTAP  276 (340)
Q Consensus       224 ~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvvlk~Grs~~  276 (340)
                      ..-|.++..|+..+.|.||+.+.|-....+....++++ .++||+++-.|....
T Consensus        44 ~~~L~~l~~~~~~~~I~l~InSPGG~v~a~~~I~~~i~~~~~pV~~~v~g~AaS   97 (193)
T 1yg6_A           44 VAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAAS   97 (193)
T ss_dssp             HHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEEEEEET
T ss_pred             HHHHHHHHhcCCCCCEEEEEECcCCCHHHHHHHHHHHHhcCCCEEEEEeeeHHH
Confidence            34555677777889999999998877888888888876 679999999776543

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=81.78  E-value=4.7  Score=37.76  Aligned_cols=88  Identities=10%  Similarity=0.009  Sum_probs=53.6

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCC-------eEEEeeCCC----C---CC----------ceecCcccccCHHHhhc
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGT-------KMVGGVTPK----K---GG----------TEHLGLPVFNTVAEAKA   96 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~-------~vv~~VnP~----~---~g----------~~i~G~p~y~sl~dip~   96 (340)
                      ++.+|+|+|++|..|+..+..|...|.       +++ .++..    .   .|          .-...+....++.+...
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~-l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~   82 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQ-LLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFK   82 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEE-EECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEE-EEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhC
Confidence            357899999999999998888877664       444 56544    1   00          00111222345555544


Q ss_pred             cCCCcEEEEecCh----------------hhHHHHHHHHHHcC-CcE-EEEec
Q 019500           97 ETKANASAIYVPP----------------PFAAAAILEAMEAE-LDL-VVCIT  131 (340)
Q Consensus        97 ~~~vDlavi~vp~----------------~~v~~~v~ea~~~G-vk~-vvi~t  131 (340)
                        +.|+++++...                ..+.++++++.+.+ .++ ++++|
T Consensus        83 --~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~S  133 (329)
T 1b8p_A           83 --DADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVG  133 (329)
T ss_dssp             --TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             --CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc
Confidence              58999986531                22556788888885 774 44444

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=81.76  E-value=4.1  Score=36.93  Aligned_cols=104  Identities=17%  Similarity=0.126  Sum_probs=49.3

Q ss_pred             cccccccCCCCCCCCCCCCcccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHh
Q 019500           15 MSSEICCGQSRSFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEA   94 (340)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~di   94 (340)
                      -+|+-|-.+.+.|-+.   +..   -+.-.++|.|+++.+|+.+++.|.+.|++++ .++.+.  +...     ...+++
T Consensus         7 ~~~~~~~~~~~~~~~~---m~~---~~~k~~lVTGas~GIG~aia~~la~~G~~V~-~~~r~~--~~~~-----~~~~~l   72 (283)
T 3v8b_A            7 HSSGVDLGTENLYFQS---MMN---QPSPVALITGAGSGIGRATALALAADGVTVG-ALGRTR--TEVE-----EVADEI   72 (283)
T ss_dssp             --------------------------CCCEEEEESCSSHHHHHHHHHHHHTTCEEE-EEESSH--HHHH-----HHHHHH
T ss_pred             Cccccccccchhhhhh---hcC---CCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEeCCH--HHHH-----HHHHHH
Confidence            4567777777777655   222   2233467889999999999999999999866 444332  1110     112222


Q ss_pred             hccCCCcEE---EEecChhhHHHHHHHHHHc--CCcEEEEecCCC
Q 019500           95 KAETKANAS---AIYVPPPFAAAAILEAMEA--ELDLVVCITEGI  134 (340)
Q Consensus        95 p~~~~vDla---vi~vp~~~v~~~v~ea~~~--Gvk~vvi~t~Gf  134 (340)
                      .+. ..++.   .+.+.++.+.++++++.+.  ++..+| ...|+
T Consensus        73 ~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lV-nnAg~  115 (283)
T 3v8b_A           73 VGA-GGQAIALEADVSDELQMRNAVRDLVLKFGHLDIVV-ANAGI  115 (283)
T ss_dssp             TTT-TCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE-ECCCC
T ss_pred             Hhc-CCcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEE-ECCCC
Confidence            221 12222   2345566777777777665  577654 45554

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=81.67  E-value=6.9  Score=38.75  Aligned_cols=78  Identities=18%  Similarity=0.230  Sum_probs=48.6

Q ss_pred             CCeEEEEeCCCCCcchH-HHHHHHHcCCeEEEeeCCCCCC--c--eecCccccc--CHHHhhccCCCcEEEEe--cChhh
Q 019500           41 KNTRVICQGITGKNGTF-HTEQAIEYGTKMVGGVTPKKGG--T--EHLGLPVFN--TVAEAKAETKANASAIY--VPPPF  111 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~-v~~~l~~~G~~vv~~VnP~~~g--~--~i~G~p~y~--sl~dip~~~~vDlavi~--vp~~~  111 (340)
                      +..+|.|+|. |..|.. +++.|.+.|+++. +.|.+...  +  +-.|++++.  +-+.+.   ++|++|+.  +|++.
T Consensus        21 ~~~~v~viGi-G~sG~s~~A~~l~~~G~~V~-~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~---~~d~vV~Spgi~~~~   95 (494)
T 4hv4_A           21 RVRHIHFVGI-GGAGMGGIAEVLANEGYQIS-GSDLAPNSVTQHLTALGAQIYFHHRPENVL---DASVVVVSTAISADN   95 (494)
T ss_dssp             -CCEEEEETT-TSTTHHHHHHHHHHTTCEEE-EECSSCCHHHHHHHHTTCEEESSCCGGGGT---TCSEEEECTTSCTTC
T ss_pred             cCCEEEEEEE-cHhhHHHHHHHHHhCCCeEE-EEECCCCHHHHHHHHCCCEEECCCCHHHcC---CCCEEEECCCCCCCC
Confidence            3456778899 888874 6889999999866 66654310  0  124777664  333333   48998875  34432


Q ss_pred             HHHHHHHHHHcCCc
Q 019500          112 AAAAILEAMEAELD  125 (340)
Q Consensus       112 v~~~v~ea~~~Gvk  125 (340)
                        +.+.+|.++|++
T Consensus        96 --p~~~~a~~~gi~  107 (494)
T 4hv4_A           96 --PEIVAAREARIP  107 (494)
T ss_dssp             --HHHHHHHHTTCC
T ss_pred             --HHHHHHHHCCCC
Confidence              356667777765

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=81.66  E-value=4  Score=40.42  Aligned_cols=128  Identities=13%  Similarity=0.170  Sum_probs=76.5

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEe-------eCCCCCCceecCcccc--------cCHH------------
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-------VTPKKGGTEHLGLPVF--------NTVA------------   92 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~-------VnP~~~g~~i~G~p~y--------~sl~------------   92 (340)
                      .+..+|+|+|. |+.|...++.|.+.|.++++.       +||+..  ++.-+.-+        ..+.            
T Consensus       233 l~Gk~vaVQG~-GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gi--d~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~  309 (450)
T 4fcc_A          233 FEGMRVSVSGS-GNVAQYAIEKAMEFGARVITASDSSGTVVDESGF--TKEKLARLIEIKSSRDGRVADYAKEFGLVYLE  309 (450)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCC--CHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEE
T ss_pred             cCCCEEEEeCC-ChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCC--CHHHHHHHHHHhcccCCccccccccCCcEEec
Confidence            34667999998 999999999999999997753       455431  11100000        0111            


Q ss_pred             --HhhccCCCcEEEEec-ChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCCCcc
Q 019500           93 --EAKAETKANASAIYV-PPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECK  169 (340)
Q Consensus        93 --dip~~~~vDlavi~v-p~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~~~~  169 (340)
                        ++-+ .++|+++=|- ......+.++...+.|++.++-.+-+....+..++   + ++.||.++ |.           
T Consensus       310 ~~~i~~-~~~DI~iPcAl~~~I~~~~a~~L~a~g~k~IaEgAN~p~t~eA~~i---L-~~rGIl~~-PD-----------  372 (450)
T 4fcc_A          310 GQQPWS-VPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATEL---F-QQAGVLFA-PG-----------  372 (450)
T ss_dssp             TCCGGG-SCCSEEEECSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHHHH---H-HHTTCEEE-CH-----------
T ss_pred             Cccccc-CCccEEeeccccccccHHHHHHHHhcCceEEecCCCCCCCHHHHHH---H-HHCCCEEE-Ch-----------
Confidence              2222 2588888764 44555778888888899986543344433333332   2 45666554 43           


Q ss_pred             cccCCCCCCCCCcEEEEecChHHHHHHHHHHHh
Q 019500          170 IGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTA  202 (340)
Q Consensus       170 ~~~~~~~~~~~G~valvSQSG~l~~~~~~~~~~  202 (340)
                                     ++.-+|+++..-++|.+.
T Consensus       373 ---------------~~aNAGGVi~S~~E~~qn  390 (450)
T 4fcc_A          373 ---------------KAANAGGVATSGLEMAQN  390 (450)
T ss_dssp             ---------------HHHTTHHHHHHHHHHHHH
T ss_pred             ---------------HHhcCccHhhhHHHHhhh
Confidence                           233467777777777654

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=81.64  E-value=1.6  Score=40.45  Aligned_cols=39  Identities=23%  Similarity=0.289  Sum_probs=30.8

Q ss_pred             ccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500           37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (340)
Q Consensus        37 lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~   77 (340)
                      ++.-+..+|+|+|. |+.|..-++.|.+.|.+++ .|+|+.
T Consensus         8 ~~~l~~k~VLVVGg-G~va~rka~~Ll~~Ga~Vt-Viap~~   46 (274)
T 1kyq_A            8 AHQLKDKRILLIGG-GEVGLTRLYKLMPTGCKLT-LVSPDL   46 (274)
T ss_dssp             EECCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEE-EEEEEE
T ss_pred             EEEcCCCEEEEECC-cHHHHHHHHHHHhCCCEEE-EEcCCC
Confidence            34556678899999 8999999999999999855 677654

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=81.61  E-value=7.6  Score=36.20  Aligned_cols=86  Identities=17%  Similarity=0.153  Sum_probs=47.5

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCC--eEE-EeeCCCCCCc---ee-cCcc------cc-cCHHHhhccCCCcEEEEec
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGT--KMV-GGVTPKKGGT---EH-LGLP------VF-NTVAEAKAETKANASAIYV  107 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~--~vv-~~VnP~~~g~---~i-~G~p------~y-~sl~dip~~~~vDlavi~v  107 (340)
                      +.+|+|+|+ |..|...+-.+...+.  +++ +.+|+.....   ++ .+.+      +. .+.+++.   +.|++|++.
T Consensus         7 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~---~aDvVii~~   82 (318)
T 1y6j_A            7 RSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVK---DCDVIVVTA   82 (318)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGT---TCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhC---CCCEEEEcC
Confidence            457788899 9999888777777665  533 2344432110   01 1111      22 1233332   589999988


Q ss_pred             Chhh----------------HHHHHHHHHHcCCcEEEEec
Q 019500          108 PPPF----------------AAAAILEAMEAELDLVVCIT  131 (340)
Q Consensus       108 p~~~----------------v~~~v~ea~~~Gvk~vvi~t  131 (340)
                      +...                +.++++++.+.+-++.++..
T Consensus        83 g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~  122 (318)
T 1y6j_A           83 GANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVV  122 (318)
T ss_dssp             CC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEEC
T ss_pred             CCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Confidence            6543                46677777776655544443

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=80.79  E-value=8.6  Score=33.87  Aligned_cols=30  Identities=10%  Similarity=0.068  Sum_probs=25.4

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeC
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT   74 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~Vn   74 (340)
                      .|+|.|+++.+|+.+++.|.+.|++++ .++
T Consensus        21 ~vlVTGas~gIG~~~a~~l~~~G~~V~-~~~   50 (249)
T 1o5i_A           21 GVLVLAASRGIGRAVADVLSQEGAEVT-ICA   50 (249)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEE-EEc
Confidence            467889999999999999999999866 443

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=80.69  E-value=3.4  Score=40.67  Aligned_cols=82  Identities=7%  Similarity=-0.072  Sum_probs=55.7

Q ss_pred             CcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee------cCccccc---CHHHhhccCCCcEEEEecCh
Q 019500           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH------LGLPVFN---TVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        39 ~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i------~G~p~y~---sl~dip~~~~vDlavi~vp~  109 (340)
                      .-+..+|+|+|. |+.|..-++.|.+.|.++. .++|+.. .++      .++....   +-+++.   +.|+++.++..
T Consensus         9 ~l~~~~vlVvGg-G~va~~k~~~L~~~ga~V~-vi~~~~~-~~~~~l~~~~~i~~~~~~~~~~~l~---~~~lVi~at~~   82 (457)
T 1pjq_A            9 QLRDRDCLIVGG-GDVAERKARLLLEAGARLT-VNALTFI-PQFTVWANEGMLTLVEGPFDETLLD---SCWLAIAATDD   82 (457)
T ss_dssp             CCBTCEEEEECC-SHHHHHHHHHHHHTTBEEE-EEESSCC-HHHHHHHTTTSCEEEESSCCGGGGT---TCSEEEECCSC
T ss_pred             ECCCCEEEEECC-CHHHHHHHHHHHhCcCEEE-EEcCCCC-HHHHHHHhcCCEEEEECCCCccccC---CccEEEEcCCC
Confidence            345567889999 8999999999999998755 7787642 221      1233221   123443   47999988766


Q ss_pred             h-hHHHHHHHHHHcCCcE
Q 019500          110 P-FAAAAILEAMEAELDL  126 (340)
Q Consensus       110 ~-~v~~~v~ea~~~Gvk~  126 (340)
                      . .-..+.++|-++|+..
T Consensus        83 ~~~n~~i~~~a~~~~i~v  100 (457)
T 1pjq_A           83 DTVNQRVSDAAESRRIFC  100 (457)
T ss_dssp             HHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHcCCEE
Confidence            5 4567888888888863

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=80.67  E-value=1.4  Score=42.22  Aligned_cols=31  Identities=19%  Similarity=0.284  Sum_probs=26.2

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEee
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGV   73 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~V   73 (340)
                      .+|+|.|++|.+|+.+++.|.+.|++++..+
T Consensus        70 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~  100 (427)
T 4f6c_A           70 GNTLLTGATGFLGAYLIEALQGYSHRIYCFI  100 (427)
T ss_dssp             EEEEEECTTSHHHHHHHHHHTTTEEEEEEEE
T ss_pred             CEEEEecCCcHHHHHHHHHHHcCCCEEEEEE
Confidence            4688999999999999999988888876443

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=80.19  E-value=4.9  Score=35.85  Aligned_cols=82  Identities=21%  Similarity=0.091  Sum_probs=48.4

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEE---EecChhhHHHHHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASA---IYVPPPFAAAAILEAM  120 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlav---i~vp~~~v~~~v~ea~  120 (340)
                      .|+|.|+++.+|+.+++.|.+.|++++.....+.  +...  ..   .+++.+. ..++..   +.+..+.+.++++++.
T Consensus        28 ~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~--~~~~--~~---~~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~   99 (272)
T 4e3z_A           28 VVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANR--EAAD--AV---VAAITES-GGEAVAIPGDVGNAADIAAMFSAVD   99 (272)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH--HHHH--HH---HHHHHHT-TCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCh--hHHH--HH---HHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            4788999999999999999999999753334332  1111  11   1122111 122222   2445666777777776


Q ss_pred             Hc--CCcEEEEecCCC
Q 019500          121 EA--ELDLVVCITEGI  134 (340)
Q Consensus       121 ~~--Gvk~vvi~t~Gf  134 (340)
                      +.  ++..+| ...|+
T Consensus       100 ~~~g~id~li-~nAg~  114 (272)
T 4e3z_A          100 RQFGRLDGLV-NNAGI  114 (272)
T ss_dssp             HHHSCCCEEE-ECCCC
T ss_pred             HhCCCCCEEE-ECCCC
Confidence            65  577654 55554

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=80.17  E-value=3.4  Score=40.37  Aligned_cols=79  Identities=15%  Similarity=0.145  Sum_probs=48.7

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC--Cc-----eecCccccc--CHHHhhccCCCcEEEEe--cChhh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--GT-----EHLGLPVFN--TVAEAKAETKANASAIY--VPPPF  111 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~--g~-----~i~G~p~y~--sl~dip~~~~vDlavi~--vp~~~  111 (340)
                      .+|.|+|. |..|...++.|.+.|+++. +.|.+..  ..     +-.|++++-  +-+++.+. .+|++|+.  +|++.
T Consensus        10 k~v~viG~-G~sG~s~A~~l~~~G~~V~-~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~-~~d~vv~spgi~~~~   86 (451)
T 3lk7_A           10 KKVLVLGL-ARSGEAAARLLAKLGAIVT-VNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDE-DFCYMIKNPGIPYNN   86 (451)
T ss_dssp             CEEEEECC-TTTHHHHHHHHHHTTCEEE-EEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGS-CEEEEEECTTSCTTS
T ss_pred             CEEEEEee-CHHHHHHHHHHHhCCCEEE-EEeCCcccCChHHHHHHhCCCEEEECCChHHhhcC-CCCEEEECCcCCCCC
Confidence            35667799 8888888999999999865 5544320  00     124777663  22233331 27988875  34433


Q ss_pred             HHHHHHHHHHcCCcE
Q 019500          112 AAAAILEAMEAELDL  126 (340)
Q Consensus       112 v~~~v~ea~~~Gvk~  126 (340)
                        +.+.++.++|++.
T Consensus        87 --p~~~~a~~~gi~v   99 (451)
T 3lk7_A           87 --PMVKKALEKQIPV   99 (451)
T ss_dssp             --HHHHHHHHTTCCE
T ss_pred             --hhHHHHHHCCCcE
Confidence              3477788888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	340
d1euca1	130	c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-c	8e-56
d2nu7a1	119	c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-c	2e-52
d1oi7a1	121	c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-c	2e-52
d1euca2	176	c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alph	6e-42
d2nu7a2	166	c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alph	5e-38
d1oi7a2	167	c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alph	2e-36
d2csua2	161	c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chai	5e-23

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 130

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  176 bits (447), Expect = 8e-56
 Identities = 89/123 (72%), Positives = 101/123 (82%)

Query: 35  PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEA 94
             ++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG  HLGLPVFNTV EA
Sbjct: 8   KHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEA 67

Query: 95  KAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL 154
           K +T A AS IYVPPPFAAAAI EA++AE+ LVVCITEGIPQ DMVRVK  L  Q KTRL
Sbjct: 68  KEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRL 127

Query: 155 VGP 157
           +GP
Sbjct: 128 IGP 130

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} Length = 119

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

 Score =  167 bits (424), Expect = 2e-52
 Identities = 76/120 (63%), Positives = 92/120 (76%), Gaps = 1/120 (0%)

Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 1   ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 60

Query: 97  ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
            T A AS IYVP PF   +ILEA++A + L++ ITEGIP  DM+ VK  L +++  R++G
Sbjct: 61  ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKL-DEAGVRMIG 119

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} Length = 121

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

 Score =  166 bits (423), Expect = 2e-52
 Identities = 64/120 (53%), Positives = 83/120 (69%), Gaps = 1/120 (0%)

Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + V++ TRV+ QGITG+ G FHT+Q + YGTK+V GVTP KGG E LG+PV++TV EA A
Sbjct: 2   ILVNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVA 61

Query: 97  ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
             + +AS I+VP P AA A LEA  A + L+V ITEGIP  DMVR    +     +RL+G
Sbjct: 62  HHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEI-KALGSRLIG 120

>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 176

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  141 bits (357), Expect = 6e-42
 Identities = 120/184 (65%), Positives = 142/184 (77%), Gaps = 12/184 (6%)

Query: 158 NCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDP 217
           NCPGVI PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS CVGIGGDP
Sbjct: 1   NCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDP 60

Query: 218 FNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEK---PIVAFIAGLT 274
           FNGT+F DC+  F+ DP TEGIILIGEIGG AEE+AA  +K+  +     P+V+FIAGLT
Sbjct: 61  FNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLT 120

Query: 275 APPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 334
           APPGRRMGHAG          I++GGKG A++KI  L+ AGV V  SPA++G  + + F+
Sbjct: 121 APPGRRMGHAGA---------IIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFE 171

Query: 335 QRGL 338
           +R +
Sbjct: 172 KRKM 175

>d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  131 bits (330), Expect = 5e-38
 Identities = 112/175 (64%), Positives = 130/175 (74%), Gaps = 10/175 (5%)

Query: 158 NCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDP 217
           N PGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT  G GQSTCVGIGGDP
Sbjct: 1   NSPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDP 60

Query: 218 FNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPP 277
             G+NF+D +  F  DPQTE I++IGEIGG+AEE+AAA IKE  T KP+V +IAG+TAP 
Sbjct: 61  IPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAPK 119

Query: 278 GRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEV 332
           G+RMGHAG          I++GGKGTA +K   L  AGV  V S A IG A+  V
Sbjct: 120 GKRMGHAGA---------IIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTV 165

>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 167

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score =  127 bits (319), Expect = 2e-36
 Identities = 87/176 (49%), Positives = 115/176 (65%), Gaps = 10/176 (5%)

Query: 158 NCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDP 217
           NCPG+I   E KIGIMPG++ K GR+GI+SRSGTLTYEA    +  GLG +T VGIGGDP
Sbjct: 1   NCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDP 60

Query: 218 FNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPP 277
             GT F D +  F  DP+TE ++LIGEIGG+ EE+AAA +K+    KP+V FI G +AP 
Sbjct: 61  VIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKDHMK-KPVVGFIGGRSAPK 119

Query: 278 GRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 333
           G+RMGHAG         AI+ G  GT + K++   EAG+ V ++  +I   + +  
Sbjct: 120 GKRMGHAG---------AIIMGNVGTPESKLRAFAEAGIPVADTIDEIVELVKKAL 166

>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 91.6 bits (227), Expect = 5e-23
 Identities = 32/175 (18%), Positives = 63/175 (36%), Gaps = 25/175 (14%)

Query: 170 IGIMPGYIH---------KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNG 220
           +GIM  ++          K G +  +S+SG L    V++T    +G S  + +G      
Sbjct: 1   VGIMNTHVDLNATFITVAKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMAD-- 58

Query: 221 TNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRR 280
            +F + +       + + I L  E     ++    + K    +KPI+A  AG +    R 
Sbjct: 59  VDFAELMEYLADTEEDKAIALYIEGVRNGKK-FMEVAKRVTKKKPIIALKAGKSESGARA 117

Query: 281 MGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
                                G+ +      +++GV V  +  ++ +     F Q
Sbjct: 118 ASS------------HTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSM-ARAFSQ 159

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	340
d1oi7a2	167	Succinyl-CoA synthetase, alpha-chain, C-terminal d	100.0
d1euca2	176	Succinyl-CoA synthetase, alpha-chain, C-terminal d	100.0
d2csua2	161	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	100.0
d2nu7a2	166	Succinyl-CoA synthetase, alpha-chain, C-terminal d	100.0
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	99.95
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	99.91
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	99.91
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	99.88
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	99.87
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	99.87
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	99.87
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	99.36
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	99.36
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	99.14
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	98.91
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	98.72
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	98.7
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	98.68
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	98.66
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	98.52
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	98.52
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	98.5
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	98.45
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	98.37
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	98.0
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.93
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.84
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.62
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.56
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.56
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.47
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	97.19
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.17
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.17
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.05
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.05
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.02
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.0
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.0
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.98
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.94
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.82
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	96.79
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.78
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	96.75
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	96.73
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.66
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	96.61
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.55
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	96.49
d1eucb1	148	Succinyl-CoA synthetase, beta-chain, C-terminal do	96.48
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.32
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.12
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	96.09
d2nu7b1	150	Succinyl-CoA synthetase, beta-chain, C-terminal do	95.86
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.65
d2g0ta1	338	Hypothetical protein TM0796 {Thermotoga maritima [	95.4
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	95.3
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	95.05
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.0
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	94.86
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.84
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.78
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	94.7
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	94.54
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.47
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	94.32
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	94.24
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	94.09
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.88
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	93.83
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.64
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	93.58
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.49
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	93.42
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	93.34
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.25
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	93.14
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	93.01
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	93.0
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.87
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.84
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.75
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	92.4
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.96
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	91.93
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	91.84
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	91.69
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	91.6
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	91.49
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.44
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	91.42
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	91.19
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	91.17
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	90.73
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	90.23
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	90.22
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	89.99
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	89.87
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	89.14
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	89.08
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	89.0
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	88.87
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	88.42
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	88.42
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	88.18
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	88.17
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	87.75
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	87.46
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	87.31
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	86.72
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	86.5
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	86.24
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	86.07
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	85.97
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	85.92
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	85.82
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	85.33
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	84.85
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.35
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	84.32
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	84.3
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	84.27
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	84.24
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	83.85
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	83.61
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	83.42
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	83.38
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	83.23
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	83.21
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	83.21
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	81.22
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	81.01
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	80.86
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	80.48
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	80.46
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	80.19

>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=7.9e-42  Score=298.54  Aligned_cols=163  Identities=48%  Similarity=0.827  Sum_probs=134.4

Q ss_pred             CCCCcccCCCcccccCCCCCCCCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCcc
Q 019500          158 NCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTE  237 (340)
Q Consensus       158 Nc~Gi~~p~~~~~~~~~~~~~~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~  237 (340)
                      ||+|++||+..+++++|...++||+||+|||||+++.+++++++++|+|||+++++||+++.|+++.|+|+||.+||+|+
T Consensus         1 NC~Gii~p~~~~~g~~p~~~~~~G~va~iSQSG~~~~~~~~~~~~~g~g~s~~~~~G~~~~~~~~~~d~l~~~~~D~~t~   80 (167)
T d1oi7a2           1 NCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETE   80 (167)
T ss_dssp             SSCEEEETTTEEEESSCGGGCCEEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCC
T ss_pred             CCCcEEccCcceEeecccccCCCCcEEEEEeccHHHHHHHHHHHHcCCCceeEEEecceeecCchHHHHHHHHhhccccc
Confidence            99999999866678888777899999999999999999999999999999999999999877899999999999999999


Q ss_pred             EEEEEEccCCCcHHHHHHHHHHhC---CCCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHc
Q 019500          238 GIILIGEIGGTAEEDAAALIKESG---TEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREA  314 (340)
Q Consensus       238 ~I~ly~E~~g~~~~~~~~f~~a~r---~~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qa  314 (340)
                      +|++|+|+    .+|+++|+++++   .+||+|++|.|++++.+++++||+         +++....|++++|+++|||+
T Consensus        81 vI~l~~E~----~~~~~~f~~~~~~~~~~kpvvv~~~g~~a~~~~~~~~a~---------a~~~s~~g~~~~~~aaf~qa  147 (167)
T d1oi7a2          81 AVVLIGEI----GGSDEEEAAAWVKDHMKKPVVGFIGGRSAPKGKRMGHAG---------AIIMGNVGTPESKLRAFAEA  147 (167)
T ss_dssp             EEEEEECS----SSSHHHHHHHHHHHHCCSCEEEEESCC---------------------------CCSHHHHHHHHHHH
T ss_pred             eeeEeeec----cchHHHHHHHHHHHhcCCceEEEeccccccccccccccc---------hhhcCCCCCHHHHHHHHHHC
Confidence            99999998    457788888765   899999999999887566688888         77655669999999999999


Q ss_pred             CCeecCCHHHHHHHHHHHH
Q 019500          315 GVTVVESPAKIGAAMLEVF  333 (340)
Q Consensus       315 Gvv~v~~~~el~~~~~~~~  333 (340)
                      ||++|+|++||+|++++.|
T Consensus       148 Gv~~v~~~~El~d~lk~~l  166 (167)
T d1oi7a2         148 GIPVADTIDEIVELVKKAL  166 (167)
T ss_dssp             TCCBCSSHHHHHHHHHHHH
T ss_pred             CCEEcCCHHHHHHHHHHhh
Confidence            9999999999999998765

>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.8e-40  Score=292.27  Aligned_cols=168  Identities=67%  Similarity=1.136  Sum_probs=148.5

Q ss_pred             CCCCcccCCCcccccCCCCCCCCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCcc
Q 019500          158 NCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTE  237 (340)
Q Consensus       158 Nc~Gi~~p~~~~~~~~~~~~~~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~  237 (340)
                      ||+|++||+...++++|...++||+||+|||||+++.++++++.++|+|+++++++||+...|+++.|+|+||.+||+|+
T Consensus         1 NC~Gii~p~~~~~~~~~~~~~~~G~iaivSQSG~l~~~l~~~~~~~g~g~~~~~~~g~~~~~~~~~~d~l~~~~~d~~t~   80 (176)
T d1euca2           1 NCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATE   80 (176)
T ss_dssp             SCCEEEETTTEEEESSCGGGCCEEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSCSSCSCCHHHHHHHHHHCTTCC
T ss_pred             CCCeEEccccceeeEcCCcCCCCCCEEEEeCCcHHHHHHHHHHHhcCCceEEEEecccchhhhhHHHHHHHHHHhhccCc
Confidence            99999999833345566666899999999999999999999999999999999988888656999999999999999999


Q ss_pred             EEEEEEccCCCcHHHHHHHHHHhC---CCCCEEEEEeCCCCCCCCcc----cccCcccccccccceecCCCCcHHHHHHH
Q 019500          238 GIILIGEIGGTAEEDAAALIKESG---TEKPIVAFIAGLTAPPGRRM----GHAGVDVYTIFGSAIVSGGKGTAQDKIKT  310 (340)
Q Consensus       238 ~I~ly~E~~g~~~~~~~~f~~a~r---~~KPVvvlk~Grs~~~g~~~----sHtg~~~~~~~~~ala~~~~g~~~~~~a~  310 (340)
                      +|++|+|.+++++++.++|+++.+   ++||||++|+||+.+..+.+    +|||         +++    |++++|+++
T Consensus        81 ~i~~~~E~~~~~~~~~~~~~~a~~~~~~~kPvv~~k~grs~~~~~~~~~a~s~tg---------s~a----gs~~~~~aa  147 (176)
T d1euca2          81 GIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLTAPPGRRMGHAGAIIA---------GGK----GGAKEKITA  147 (176)
T ss_dssp             EEEEEEESSSSHHHHHHHHHHHHSSSSSCCCEEEEEECTTCCTTSCCSSTTCCCB---------TTB----SCHHHHHHH
T ss_pred             ccceEEEeeccchhhhHHHHHHHHhccCCCceEEEeccccccccccccccchhcc---------CCC----CCHHHHHHH
Confidence            999999999888888888888765   78999999999998633333    5667         666    999999999


Q ss_pred             HHHcCCeecCCHHHHHHHHHHHHHhcCC
Q 019500          311 LREAGVTVVESPAKIGAAMLEVFKQRGL  338 (340)
Q Consensus       311 ~~qaGvv~v~~~~el~~~~~~~~~~~~~  338 (340)
                      |||+||++|+|++||.++++..|+++.|
T Consensus       148 frqaGvi~v~s~~El~~~l~~~~~~~~~  175 (176)
T d1euca2         148 LQSAGVVVSMSPAQLGTTIYKEFEKRKM  175 (176)
T ss_dssp             HHHTTCEECSSGGGHHHHHHHHHHHTTC
T ss_pred             HHHCCCeEcCCHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999988765

>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.3e-41  Score=295.55  Aligned_cols=150  Identities=20%  Similarity=0.346  Sum_probs=125.2

Q ss_pred             CCcccCC-CcccccCCCCCCCCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccE
Q 019500          160 PGVIKPG-ECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEG  238 (340)
Q Consensus       160 ~Gi~~p~-~~~~~~~~~~~~~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~  238 (340)
                      ||++||+ +++.+|.|.  ++||+||+|||||+++.++++|+.++|+|||++||+||++  |+++.|+|+||.+||+||+
T Consensus         1 lGi~n~~~~l~~tf~~~--~~~G~valiSqSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~--~~~~~d~l~~l~~D~~t~~   76 (161)
T d2csua2           1 VGIMNTHVDLNATFITV--AKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMA--DVDFAELMEYLADTEEDKA   76 (161)
T ss_dssp             CEEEEGGGTEEEESSCC--CEECSEEEEESCHHHHHHHHHHHHHTTCEESEEEECTTCC--SSCHHHHHHHHTTCSSCCE
T ss_pred             CeeeeCcCCcccccCCC--CCCCCEEEEECCHHHHHHHHHHHHhCCCCeeEEEecCCcc--ccCHHHHHHHHhcCCCCcE
Confidence            6999998 888888764  7899999999999999999999999999999999999998  9999999999999999999


Q ss_pred             EEEEEccCCCcHHHHHHHHHHhC---CCCCEEEEEeCCCCCCCCc--ccccCcccccccccceecCCCCcHHHHHHHHHH
Q 019500          239 IILIGEIGGTAEEDAAALIKESG---TEKPIVAFIAGLTAPPGRR--MGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLRE  313 (340)
Q Consensus       239 I~ly~E~~g~~~~~~~~f~~a~r---~~KPVvvlk~Grs~~~g~~--~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~q  313 (340)
                      |++|+|+++    |+++|++++|   ++||||++|+||++. |++  .+|||         +++    |++++|+++|+|
T Consensus        77 i~l~~E~~~----~~~~f~~~~r~~~~~Kpvv~~k~G~s~~-g~~aa~sHtg---------a~a----g~~~~~~a~~~~  138 (161)
T d2csua2          77 IALYIEGVR----NGKKFMEVAKRVTKKKPIIALKAGKSES-GARAASSHTG---------SLA----GSWKIYEAAFKQ  138 (161)
T ss_dssp             EEEEESCCS----CHHHHHHHHHHHHHHSCEEEEECC--------------------------------CHHHHHHHHHH
T ss_pred             EEEEecCCc----CHHHHHHHHHHHhccCCeeEEEeecccc-cccccccccc---------ccc----ccHHHHHHHHHH
Confidence            999999854    6678888765   789999999999999 666  69999         998    999999999999


Q ss_pred             cCCeecCCHHHHHHHHHH
Q 019500          314 AGVTVVESPAKIGAAMLE  331 (340)
Q Consensus       314 aGvv~v~~~~el~~~~~~  331 (340)
                      +|+++++|++||+|+++.
T Consensus       139 aGvi~v~~~~el~~~a~~  156 (161)
T d2csua2         139 SGVLVANTIDEMLSMARA  156 (161)
T ss_dssp             TTCEEESSHHHHHHHHTT
T ss_pred             CCceEeCCHHHHHHHHHH
Confidence            999999999999999875

>d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.5e-40  Score=285.68  Aligned_cols=161  Identities=59%  Similarity=0.941  Sum_probs=144.2

Q ss_pred             CCCCcccCCCcccccCCCCCCCCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCcc
Q 019500          158 NCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTE  237 (340)
Q Consensus       158 Nc~Gi~~p~~~~~~~~~~~~~~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~  237 (340)
                      ||+|+++|...++++.|...++||+||||||||+++.++++|++++++|||+++|+||+++.|+++.|+++|+.+||.|+
T Consensus         1 N~~GiI~P~~~~~g~~~~~~~~~G~iaiiSQSG~~~~~l~~~~~~~~~g~s~~vs~Gn~~~~~~~~~~~~~~~~dd~~t~   80 (166)
T d2nu7a2           1 NSPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTE   80 (166)
T ss_dssp             SCCEEEETTTEEEESSCGGGCCEEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCC
T ss_pred             CCCcEEcCCccceeeccccCCCCCCEEEEECCchHHHHHHHHhhhhhcCcceeeccCCCcccchHHHHHHHhhccCCccE
Confidence            99999999855677778777999999999999999999999999999999999999999877899999999999999999


Q ss_pred             EEEEEEccCCCcHHHHHHHHHHhC---CCCCEEEEEeCCCCCCCCc--ccccCcccccccccceecCCCCcHHHHHHHHH
Q 019500          238 GIILIGEIGGTAEEDAAALIKESG---TEKPIVAFIAGLTAPPGRR--MGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLR  312 (340)
Q Consensus       238 ~I~ly~E~~g~~~~~~~~f~~a~r---~~KPVvvlk~Grs~~~g~~--~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~  312 (340)
                      +|++|.|..    +++++|..+++   ++||||+||+|||+. +++  .+||+         +++ +..|++++|+++||
T Consensus        81 vi~~~~e~~----~~~~~~~~~~~~~~~~KPvV~~k~Grs~~-g~~aa~sht~---------~~a-~~~g~~~~~~aa~r  145 (166)
T d2nu7a2          81 AIVMIGEIG----GSAEEEAAAYIKEHVTKPVVGYIAGVTAP-KGKRMGHAGA---------IIA-GGKGTADEKFAALE  145 (166)
T ss_dssp             EEEEEEESS----SSHHHHHHHHHHHHCCSCEEEEEECTTCC-TTCCCSSTTC---------CCG-GGCCCHHHHHHHHH
T ss_pred             EEEEEEecc----cchhhHHHHHHHHhcCCCeEEEeCCcCCc-chhhhhccch---------hcc-CCCCCHHHHHHHHH
Confidence            999999984    45566766543   899999999999998 665  58999         875 44589999999999


Q ss_pred             HcCCeecCCHHHHHHHHHHHH
Q 019500          313 EAGVTVVESPAKIGAAMLEVF  333 (340)
Q Consensus       313 qaGvv~v~~~~el~~~~~~~~  333 (340)
                      |+|+++++|++||+++++++|
T Consensus       146 ~aGvi~v~~~~el~~~l~~vl  166 (166)
T d2nu7a2         146 AAGVKTVRSLADIGEALKTVL  166 (166)
T ss_dssp             TTTCEECSSGGGHHHHHHHHC
T ss_pred             HCCceEeCCHHHHHHHHHHhC
Confidence            999999999999999999864

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.95  E-value=6.9e-29  Score=207.42  Aligned_cols=119  Identities=25%  Similarity=0.346  Sum_probs=103.2

Q ss_pred             cccccCcCCeEEEEeCCCC---CcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChh
Q 019500           34 APAVFVDKNTRVICQGITG---KNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        34 l~~lf~p~~iaViVvGasg---k~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      |++||+|++|+|+  |+|.   ++|+.+.++|++.|.-.++||||++  ++++|+|||+||+|+|+  .||++++++|++
T Consensus         2 L~~lf~PksIAVV--GaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~--~~i~G~~~y~sl~dlp~--~vDlvvi~vp~~   75 (129)
T d2csua1           2 LDYFFNPKGIAVI--GASNDPKKLGYEVFKNLKEYKKGKVYPVNIKE--EEVQGVKAYKSVKDIPD--EIDLAIIVVPKR   75 (129)
T ss_dssp             CCTTTSCSEEEEE--TCCSCTTSHHHHHHHHHTTCCSSEEEEECSSC--SEETTEECBSSTTSCSS--CCSEEEECSCHH
T ss_pred             hhHhCCCCeEEEE--ccCCCCCCcHHHHHHHHHHcCCCcEEEeccCc--cccCCeEeecchhhcCC--CCceEEEecChH
Confidence            7899999998777  9994   5677888998876522566999999  89999999999999998  599999999999


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChhh------HHHHHHHHhccCCcEEEccCC
Q 019500          111 FAAAAILEAMEAELDLVVCITEGIPQHD------MVRVKAALNNQSKTRLVGPNC  159 (340)
Q Consensus       111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~------~~~l~~~aar~~girviGPNc  159 (340)
                      .+++++++|+++|+|.+||+++||+|.+      .+++.+.+ +++|||++||||
T Consensus        76 ~~~~~~~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a-~~~girv~GPNC  129 (129)
T d2csua1          76 FVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIA-HKYGMRIIGPNC  129 (129)
T ss_dssp             HHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHH-HHHTCEEECSSC
T ss_pred             HhHHHHHHHHHcCCCEEEEecccccccchhhHHHHHHHHHHH-HHcCCEEeCCCC
Confidence            9999999999999999999999998753      23444554 889999999999

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.91  E-value=1.6e-24  Score=178.50  Aligned_cols=129  Identities=71%  Similarity=1.117  Sum_probs=121.8

Q ss_pred             CCCCCCCCcccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEE
Q 019500           26 SFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAI  105 (340)
Q Consensus        26 ~~~~~~~~l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi  105 (340)
                      ||+++   ..++|.+++++|+|+|.+|+.|+++.+.+++||.+++++|+|.++|+++.|+|+|.+++|..+++++|..+|
T Consensus         2 ~~~~~---~~sIli~k~TrVivQGiTG~~G~~ht~~m~~YGT~iVaGVtPgKgG~~~~giPVf~tV~eA~~~~~~daSvI   78 (130)
T d1euca1           2 SYTAS---RKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVI   78 (130)
T ss_dssp             CGGGG---GGGGCCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEE
T ss_pred             Ccccc---ceeEEEcCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEeeccCCCCccccCccchhhHHHHHHhcCCcEEEE
Confidence            68888   899999999999999999999999999999999999999999999999999999999999998778999999


Q ss_pred             ecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEcc
Q 019500          106 YVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGP  157 (340)
Q Consensus       106 ~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGP  157 (340)
                      |+||.++.+++.||+++|++.++++|+|++..|+.++.+.+.++.+.|++||
T Consensus        79 fVPp~~a~dAi~EAi~agI~liV~ITEgIPv~Dm~~i~~~~~~~~~~~liGP  130 (130)
T d1euca1          79 YVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGP  130 (130)
T ss_dssp             CCCHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEECS
T ss_pred             ecCHHHHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHHHHHHhCCCcEEeCc
Confidence            9999999999999999999999999999999999888766546778999999

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.91  E-value=1.2e-24  Score=178.16  Aligned_cols=111  Identities=21%  Similarity=0.276  Sum_probs=94.2

Q ss_pred             CCeEEEEeCCCC---CcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHH
Q 019500           41 KNTRVICQGITG---KNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAIL  117 (340)
Q Consensus        41 ~~iaViVvGasg---k~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~  117 (340)
                      |+++  |+|+|.   ++|+.+.++|+++||+ ++||||++  ++++|++||+|++|+|+  +||++++++|++.++++++
T Consensus         2 KsIA--VvGaS~~~~k~g~~v~~~L~~~g~~-V~pVnP~~--~~i~G~~~y~sl~~lp~--~~D~vvi~vp~~~~~~~l~   74 (116)
T d1y81a1           2 RKIA--LVGASKNPAKYGNIILKDLLSKGFE-VLPVNPNY--DEIEGLKCYRSVRELPK--DVDVIVFVVPPKVGLQVAK   74 (116)
T ss_dssp             CEEE--EETCCSCTTSHHHHHHHHHHHTTCE-EEEECTTC--SEETTEECBSSGGGSCT--TCCEEEECSCHHHHHHHHH
T ss_pred             cEEE--EEcccCCCCCcHHHHHHHHHHCCCE-EEEEcccc--ccccCccccccchhccc--cceEEEEEeCHHHHHHHHH
Confidence            4555  459985   5678899999999997 55999998  89999999999999998  5999999999999999999


Q ss_pred             HHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcc
Q 019500          118 EAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVI  163 (340)
Q Consensus       118 ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~  163 (340)
                      +|+++|+|.+| +++|...++.   .+.+ +++||+++||||+|+-
T Consensus        75 ~~~~~g~k~v~-~~~g~~~~~~---~~~a-~~~gi~vigpnC~~ve  115 (116)
T d1y81a1          75 EAVEAGFKKLW-FQPGAESEEI---RRFL-EKAGVEYSFGRCIMVE  115 (116)
T ss_dssp             HHHHTTCCEEE-ECTTSCCHHH---HHHH-HHHTCEEECSCCHHHH
T ss_pred             HHHhcCCceEE-eccchhhHHH---HHHH-HHcCCEEEcCCCCCEe
Confidence            99999999865 6777544443   3444 7889999999999874

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=2.9e-23  Score=175.11  Aligned_cols=119  Identities=16%  Similarity=0.234  Sum_probs=99.4

Q ss_pred             ccccc-CcCCeEEEEeCCCC---CcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           34 APAVF-VDKNTRVICQGITG---KNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        34 l~~lf-~p~~iaViVvGasg---k~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      |+++| .|++++|+  |+|.   ++|+.++++|++.||+ ++||||++  ++++|+|||++++|+|+  .+|++++++|+
T Consensus        12 i~~~L~~~ksIAVV--GaS~~~~~~g~~v~~~L~~~g~~-v~pVnP~~--~~i~G~~~~~sl~dlp~--~iD~v~i~vp~   84 (139)
T d2d59a1          12 IREILTRYKKIALV--GASPKPERDANIVMKYLLEHGYD-VYPVNPKY--EEVLGRKCYPSVLDIPD--KIEVVDLFVKP   84 (139)
T ss_dssp             HHHHHHHCCEEEEE--TCCSCTTSHHHHHHHHHHHTTCE-EEEECTTC--SEETTEECBSSGGGCSS--CCSEEEECSCH
T ss_pred             HHHHHhcCCeEEEE--eecCCCCCchHHHHHHHHHCCCE-EEEECCcc--cccCCCcccccccccCc--cceEEEEEeCH
Confidence            66666 78888877  9995   5788899999999997 55999998  89999999999999998  59999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCccc
Q 019500          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK  164 (340)
Q Consensus       110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~  164 (340)
                      +.+++++++|+++|+|.+|+.+.++.| +..   +.+ +++|++++||||+.+..
T Consensus        85 ~~~~~~~~e~~~~g~k~v~~~~G~~~e-e~~---~~a-~~~gi~vig~~C~~v~~  134 (139)
T d2d59a1          85 KLTMEYVEQAIKKGAKVVWFQYNTYNR-EAS---KKA-DEAGLIIVANRCMMREH  134 (139)
T ss_dssp             HHHHHHHHHHHHHTCSEEEECTTCCCH-HHH---HHH-HHTTCEEEESCCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEEeccccCH-HHH---HHH-HHCCCEEEcCCcChhhh
Confidence            999999999999999986644444543 333   333 67899999999987643

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=2.6e-23  Score=174.69  Aligned_cols=121  Identities=20%  Similarity=0.315  Sum_probs=103.7

Q ss_pred             ccccc-CcCCeEEEEeCCCC---CcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           34 APAVF-VDKNTRVICQGITG---KNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        34 l~~lf-~p~~iaViVvGasg---k~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      |+.+| .||+++|+  |||.   |+|+.+.++|++.||+.+ +|||+..++++.|.|||++++|+|+  .+|++++++|+
T Consensus         6 i~~~L~~pksIAVV--GaS~~~~k~g~~v~~~L~~~g~~~~-~v~~~~~~~~i~g~~~~~~l~~i~~--~iD~v~v~~p~   80 (136)
T d1iuka_           6 LRAYLSQAKTIAVL--GAHKDPSRPAHYVPRYLREQGYRVL-PVNPRFQGEELFGEEAVASLLDLKE--PVDILDVFRPP   80 (136)
T ss_dssp             HHHHHHHCCEEEEE--TCCSSTTSHHHHHHHHHHHTTCEEE-EECGGGTTSEETTEECBSSGGGCCS--CCSEEEECSCH
T ss_pred             HHHHHhCCCeEEEE--eecCCCCCchHHHHHHHhcCCCCce-EEEeccccceeeceecccchhhccC--CCceEEEeccH
Confidence            66654 89988777  9995   567889999999999855 8888766689999999999999998  59999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCccc
Q 019500          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK  164 (340)
Q Consensus       110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~  164 (340)
                      +.+++++++|+++|++.+ |+++|+.+++..   +++ +++|+++++|||+++..
T Consensus        81 ~~v~~~v~~~~~~g~k~i-~~q~G~~~~e~~---~~a-~~~Gi~vV~~~C~~ie~  130 (136)
T d1iuka_          81 SALMDHLPEVLALRPGLV-WLQSGIRHPEFE---KAL-KEAGIPVVADRCLMVEH  130 (136)
T ss_dssp             HHHTTTHHHHHHHCCSCE-EECTTCCCHHHH---HHH-HHTTCCEEESCCHHHHH
T ss_pred             HHHHHHHHHHHhhCCCeE-EEecCccCHHHH---HHH-HHcCCEEEcCCccHHHH
Confidence            999999999999999985 589998766544   443 78999999999998754

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=3.5e-22  Score=162.63  Aligned_cols=119  Identities=54%  Similarity=0.871  Sum_probs=112.9

Q ss_pred             ccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        37 lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      +|.+++++|+|+|.+|+.|+++.+.+++||.+++++|+|.++|+++.|+|+|.+++|..+++++|..++|+||.++.+++
T Consensus         2 ili~k~trVivQGiTG~~G~~ht~~m~~yGT~iVaGVtPgkgG~~~~giPVf~tV~eAv~~~~~d~SvIfVPp~~a~dAi   81 (121)
T d1oi7a1           2 ILVNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAA   81 (121)
T ss_dssp             CSCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHH
T ss_pred             EEecCCCcEEEEcCCCcHHHHHHHHHHHhCCceEeeeecCCCCcEEECCchHhhHHHHHHhcCCeEEEEeeCHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999888899999999999999999


Q ss_pred             HHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       117 ~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                      .||+++|++.++++|+|.+..|+.++.+.+ ++.+.+++|
T Consensus        82 ~EAi~agI~liv~ITEgVPv~Dm~~i~~~~-~~~~~~liG  120 (121)
T d1oi7a1          82 LEAAHAGIPLIVLITEGIPTLDMVRAVEEI-KALGSRLIG  120 (121)
T ss_dssp             HHHHHTTCSEEEECCSCCCHHHHHHHHHHH-HHHTCEEEE
T ss_pred             HHHHhCCCcEEEEecCCCCHHHHHHHHHHH-HhCCCEEeC
Confidence            999999999999999999999999888877 677899998

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=3e-22  Score=162.60  Aligned_cols=119  Identities=64%  Similarity=1.055  Sum_probs=113.1

Q ss_pred             ccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        37 lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      +|.+++++|+|+|.+|+.|+++.+.+++||.+++++|+|+.+|+++.|+|+|.|++|..+++++|..++|+||.++.+++
T Consensus         1 Ili~k~trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtPgkgG~~~~giPVf~sV~eAv~~~~~~~SvIfVPp~~a~dA~   80 (119)
T d2nu7a1           1 ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSI   80 (119)
T ss_dssp             CSCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTEEETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHH
T ss_pred             CeecCCCcEEEEcCCCcHHHHHHHHHHHhCCceEEEEccCCCCcccCCCchhhHHHHHHHHhCCCeEEEeccHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999998877899999999999999999


Q ss_pred             HHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       117 ~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                      .||++.|++.++++|+|.+..|+.++.+.+ ++.|.+++|
T Consensus        81 ~EAi~agI~~iV~ITEgIP~~D~~~i~~~~-~~~~~~liG  119 (119)
T d2nu7a1          81 LEAIDAGIKLIITITEGIPTLDMLTVKVKL-DEAGVRMIG  119 (119)
T ss_dssp             HHHHHTTCSEEEECCCCCCHHHHHHHHHHH-HHHTCEEEC
T ss_pred             HHHHHCCCCEEEEecCCCCHHHHHHHHHHH-hhCCCEEeC
Confidence            999999999999999999999999988876 788999997

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=8.5e-13  Score=112.92  Aligned_cols=119  Identities=16%  Similarity=0.202  Sum_probs=95.6

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCC---Cc--------eecCcccccCHHHhhccCCCcEEEEec
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKG---GT--------EHLGLPVFNTVAEAKAETKANASAIYV  107 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~---g~--------~i~G~p~y~sl~dip~~~~vDlavi~v  107 (340)
                      ..+++|+|+|++||||+.+.+.+.+. ++++++.++++..   |.        ...+++++.+++++.+  ++|++|+|+
T Consensus         2 ~s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~--~~DViIDFs   79 (162)
T d1diha1           2 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKD--DFDVFIDFT   79 (162)
T ss_dssp             CCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTT--SCSEEEECS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhc--ccceEEEec
Confidence            45799999999999999999988775 7888877765421   11        1245678888888876  599999999


Q ss_pred             ChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCC-CCcc
Q 019500          108 PPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC-PGVI  163 (340)
Q Consensus       108 p~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc-~Gi~  163 (340)
                      +|+.+.+.++.|.+.|++. |+.|+||++++...+.+.+ ++-.+ ++.||. +|+.
T Consensus        80 ~p~~~~~~~~~a~~~~~~~-ViGTTG~~~~~~~~i~~~a-~~ipi-~~apN~SlGi~  133 (162)
T d1diha1          80 RPEGTLNHLAFCRQHGKGM-VIGTTGFDEAGKQAIRDAA-ADIAI-VFAANFSMTFA  133 (162)
T ss_dssp             CHHHHHHHHHHHHHTTCEE-EECCCCCCHHHHHHHHHHT-TTSCE-EECSCCCHHHH
T ss_pred             cHHHHHHHHHHHHhcccee-EEecCCCcHHHHHHHHHHc-CCCCE-EEEccccHHHH
Confidence            9999999999999999987 5699999998888887765 44443 778996 7864

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.36  E-value=3.3e-12  Score=106.07  Aligned_cols=105  Identities=16%  Similarity=0.194  Sum_probs=84.9

Q ss_pred             EEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHHc
Q 019500           44 RVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEA  122 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~  122 (340)
                      ||+|+|++||||+.+.+.+.+. ++++++.++++.            ++..+.. .++|++|+|+.|+.+.+.++.|.+.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~------------~~~~~~~-~~~DvvIDFS~p~~~~~~~~~~~~~   67 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD------------PLSLLTD-GNTEVVIDFTHPDVVMGNLEFLIDN   67 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC------------CTHHHHT-TTCSEEEECCCTTTHHHHHHHHHHT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC------------chhhhcc-ccCCEEEEcccHHHHHHHHHHHHhc
Confidence            5788899999999999987764 889998888653            2233332 2689999999999999999999999


Q ss_pred             CCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccCC-CCc
Q 019500          123 ELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPNC-PGV  162 (340)
Q Consensus       123 Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPNc-~Gi  162 (340)
                      |++. |+.|+||++++.+++.+.+++..++. +..||. +|+
T Consensus        68 ~~~~-ViGTTG~~~~~~~~l~~~~~~~~~ipil~apNfSlGv  108 (135)
T d1yl7a1          68 GIHA-VVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFTSFV  108 (135)
T ss_dssp             TCEE-EECCCCCCHHHHHHHHHHHHSCTTCEEEECSCCGGGH
T ss_pred             CCCE-EEeccccchhHHHHHHHHHHhcCCCCEEEcCCccHHH
Confidence            9997 66999999998888887543556675 778996 675

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.14  E-value=1.5e-10  Score=94.96  Aligned_cols=97  Identities=12%  Similarity=0.087  Sum_probs=79.4

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHHc
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEA  122 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~  122 (340)
                      +||.|+|++||||+.+.+.+.+.++++++.++++.  .+.           + +  ++|++|+|+.|+.+.+.++.|.++
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~--~~~-----------~-~--~~DVvIDFS~p~~~~~~l~~~~~~   64 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG--VEE-----------L-D--SPDVVIDFSSPEALPKTVDLCKKY   64 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE--EEE-----------C-S--CCSEEEECSCGGGHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCc--HHH-----------h-c--cCCEEEEecCHHHHHHHHHHHHhc
Confidence            36888899999999999888888999888887654  211           1 2  489999999999999999999999


Q ss_pred             CCcEEEEecCCCChhhHHHHHHHHhccCCcEE-EccCC
Q 019500          123 ELDLVVCITEGIPQHDMVRVKAALNNQSKTRL-VGPNC  159 (340)
Q Consensus       123 Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girv-iGPNc  159 (340)
                      +++. |+.|+|+++++.+++.+++ +  .+++ ..||+
T Consensus        65 ~~p~-ViGTTG~~~~~~~~i~~~a-k--~~pv~~a~N~   98 (128)
T d1vm6a3          65 RAGL-VLGTTALKEEHLQMLRELS-K--EVPVVQAYSR   98 (128)
T ss_dssp             TCEE-EECCCSCCHHHHHHHHHHT-T--TSEEEECSCT
T ss_pred             CCCE-EEEcCCCCHHHHHHHHHHH-h--hCCEEeeecc
Confidence            9986 6799999999888887764 3  3564 57885

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.91  E-value=1e-09  Score=89.49  Aligned_cols=92  Identities=14%  Similarity=0.112  Sum_probs=77.0

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHH-cCCeEEEee--CCCCCCceecCccccc--CHHHhhccCCCcEEEEecChhhHHH
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGV--TPKKGGTEHLGLPVFN--TVAEAKAETKANASAIYVPPPFAAA  114 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~-~G~~vv~~V--nP~~~g~~i~G~p~y~--sl~dip~~~~vDlavi~vp~~~v~~  114 (340)
                      +++++|+|+|| |+.|+.+++.+.. .+|++++.+  ||+..|..+.|+|+|.  .++++.. ..++++++++|.+...+
T Consensus         1 ~~~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~~~~l~~~~~-~~i~iai~~i~~~~~~~   78 (126)
T d2dt5a2           1 NRKWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVP-GRIEIALLTVPREAAQK   78 (126)
T ss_dssp             TSCEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHST-TTCCEEEECSCHHHHHH
T ss_pred             CCCceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCEEEecHHHHHHHHh-hcccEEEEeCCHHHHHH
Confidence            36789999999 9999998886653 489988776  5777788999999994  3555554 36999999999999999


Q ss_pred             HHHHHHHcCCcEEEEecCC
Q 019500          115 AILEAMEAELDLVVCITEG  133 (340)
Q Consensus       115 ~v~ea~~~Gvk~vvi~t~G  133 (340)
                      +++.|.+.|++.++.++++
T Consensus        79 I~d~l~~~gIk~I~~f~~~   97 (126)
T d2dt5a2          79 AADLLVAAGIKGILNFAPV   97 (126)
T ss_dssp             HHHHHHHHTCCEEEECSSS
T ss_pred             HHHHHHHcCCCEEeecCce
Confidence            9999999999999888775

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=4.6e-08  Score=81.96  Aligned_cols=107  Identities=13%  Similarity=0.116  Sum_probs=81.7

Q ss_pred             eEEEEeCCCCCcchH-HHHHHHHc-CCeEEEeeCCCCCCc----eecCcccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500           43 TRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKGGT----EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (340)
Q Consensus        43 iaViVvGasgk~G~~-v~~~l~~~-G~~vv~~VnP~~~g~----~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v  116 (340)
                      ++|.|+|+ |.+|+. +...+.+. ++++++.++|+....    +-.+++.|.+++++.+  ++|+++|++|+..+.+.+
T Consensus         2 iri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~--~~D~V~I~tp~~~h~~~~   78 (164)
T d1tlta1           2 LRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAA--SCDAVFVHSSTASHFDVV   78 (164)
T ss_dssp             EEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHT--TCSEEEECSCTTHHHHHH
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhh--hcccccccccchhccccc
Confidence            67888998 899875 56677664 788888888876311    2358899999999976  599999999999999999


Q ss_pred             HHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE
Q 019500          117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR  153 (340)
Q Consensus       117 ~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir  153 (340)
                      ..|+++|.+.++=-.-..+.++..++.+++ +++|+.
T Consensus        79 ~~al~~gk~V~~EKPla~~~~e~~~l~~~a-~~~~~~  114 (164)
T d1tlta1          79 STLLNAGVHVCVDKPLAENLRDAERLVELA-ARKKLT  114 (164)
T ss_dssp             HHHHHTTCEEEEESSSCSSHHHHHHHHHHH-HHTTCC
T ss_pred             cccccccceeeccccccCCHHHHHHHHHHH-HHcCCc
Confidence            999999976533211244566777887776 677754

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=98.70  E-value=1.1e-08  Score=86.76  Aligned_cols=107  Identities=11%  Similarity=-0.003  Sum_probs=80.3

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM  120 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~  120 (340)
                      ++||.|+|+ |++|+.+++.+.+. ++++++.++++.......+.+.|.++.++.+  ++|++++++|+..+.+.+..|+
T Consensus         3 kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~~~~~~~~~~~~~~~--~~D~Vvi~tp~~~h~~~a~~aL   79 (170)
T d1f06a1           3 NIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHAD--DVDVLFLCMGSATDIPEQAPKF   79 (170)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTT--TCSEEEECSCTTTHHHHHHHHH
T ss_pred             cceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEecccccccccccccchhhhhhcc--ccceEEEeCCCcccHHHHHHHH
Confidence            588999998 99999999999875 7888888777653234556666777777765  6999999999999999999999


Q ss_pred             HcCCcEEEEecCCC-Ch--hhHHHHHHHHhccCCcEE
Q 019500          121 EAELDLVVCITEGI-PQ--HDMVRVKAALNNQSKTRL  154 (340)
Q Consensus       121 ~~Gvk~vvi~t~Gf-~e--~~~~~l~~~aar~~girv  154 (340)
                      ++|++.+  .+... ..  ++.+++.+++ +++|..+
T Consensus        80 ~aG~~vv--~~~~~~~~~~~~~~~l~~~A-~~~~~~~  113 (170)
T d1f06a1          80 AQFACTV--DTYDNHRDIPRHRQVMNEAA-TAAGNVA  113 (170)
T ss_dssp             TTTSEEE--CCCCCGGGHHHHHHHHHHHH-HHHTCEE
T ss_pred             HCCCcEE--EecCccccCHHHHHHHHHHH-HhcCceE
Confidence            9999863  34332 22  3345566665 6666553

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.68  E-value=5.1e-08  Score=83.10  Aligned_cols=109  Identities=7%  Similarity=0.074  Sum_probs=83.4

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCC-c---eecC----cccccCHHHhhccCCCcEEEEecChhhHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHLG----LPVFNTVAEAKAETKANASAIYVPPPFAA  113 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g-~---~i~G----~p~y~sl~dip~~~~vDlavi~vp~~~v~  113 (340)
                      ++|.|+|+ |.+|+.+.+.+... ++++++.++++... +   +..+    .++|.+++++.+..++|++++++|+..+.
T Consensus         2 iki~iIG~-G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~   80 (184)
T d1ydwa1           2 IRIGVMGC-ADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHV   80 (184)
T ss_dssp             EEEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHH
T ss_pred             eEEEEEcC-CHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhc
Confidence            68889998 89999999988875 77888777775410 1   1223    45799999998766799999999999999


Q ss_pred             HHHHHHHHcCCcEEEEecC-CCChhhHHHHHHHHhccCCcEE
Q 019500          114 AAILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTRL  154 (340)
Q Consensus       114 ~~v~ea~~~Gvk~vvi~t~-Gf~e~~~~~l~~~aar~~girv  154 (340)
                      +.+.+|+++|.+.++ =-+ +.+.++..++.+.+ +++|+.+
T Consensus        81 ~~~~~~l~~g~~v~~-EKP~~~~~~e~~~l~~~~-~~~~~~~  120 (184)
T d1ydwa1          81 EWAIKAAEKGKHILL-EKPVAMNVTEFDKIVDAC-EANGVQI  120 (184)
T ss_dssp             HHHHHHHTTTCEEEE-CSSCSSSHHHHHHHHHHH-HTTTCCE
T ss_pred             chhhhhhhccceeec-ccccccCHHHHHHHHHHH-HhhCCEE
Confidence            999999999987533 222 34567778888876 6777765

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=98.66  E-value=5.4e-08  Score=83.02  Aligned_cols=115  Identities=13%  Similarity=0.134  Sum_probs=84.2

Q ss_pred             CCeEEEEeCCCCCcchH-HHHHHHHc--CCeEEEeeCCCCCC-ce---ecCc-ccccCHHHhhccCCCcEEEEecChhhH
Q 019500           41 KNTRVICQGITGKNGTF-HTEQAIEY--GTKMVGGVTPKKGG-TE---HLGL-PVFNTVAEAKAETKANASAIYVPPPFA  112 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~-v~~~l~~~--G~~vv~~VnP~~~g-~~---i~G~-p~y~sl~dip~~~~vDlavi~vp~~~v  112 (340)
                      +.++|.|+|+ |.+|+. +.+.+.+.  .+++++.+++.... ++   -.|. .+|.+++|+.+..++|+++|++|+..+
T Consensus         2 kkirigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h   80 (181)
T d1zh8a1           2 RKIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELN   80 (181)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGH
T ss_pred             CCcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccccc
Confidence            4578899998 888865 67778764  36788777876410 11   2344 589999999876679999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEE-Ecc
Q 019500          113 AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL-VGP  157 (340)
Q Consensus       113 ~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girv-iGP  157 (340)
                      .+.+.+|+++|.+.++=-.-+.+.++..++.+.+ ++++..+ +|-
T Consensus        81 ~~~~~~al~~gk~V~~EKPl~~~~~e~~~l~~~~-~~~~~~~~v~~  125 (181)
T d1zh8a1          81 LPFIEKALRKGVHVICEKPISTDVETGKKVVELS-EKSEKTVYIAE  125 (181)
T ss_dssp             HHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHH-HHCSSCEEEEC
T ss_pred             ccccccccccchhhhcCCCCcCCHHHHHHHHHHH-HHhCCeEEEEe
Confidence            9999999999976543222345667778888776 6777553 443

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.52  E-value=3e-07  Score=77.51  Aligned_cols=112  Identities=11%  Similarity=0.054  Sum_probs=78.6

Q ss_pred             cCcCCeEEEEeCCCCCcchHHHHHHHHc----CCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHH
Q 019500           38 FVDKNTRVICQGITGKNGTFHTEQAIEY----GTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAA  113 (340)
Q Consensus        38 f~p~~iaViVvGasgk~G~~v~~~l~~~----G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~  113 (340)
                      .....++|+|+|+ |.+|+.+++.+.+.    .+.++...+++.. ....+.+ |.|++|+.+..++|+++|++|++.+.
T Consensus         3 ~~~~k~kv~iIG~-G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~e~l~~~~iD~V~I~tp~~~H~   79 (172)
T d1lc0a1           3 TNSGKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFVSRREL-GSLDEVR-QISLEDALRSQEIDVAYICSESSSHE   79 (172)
T ss_dssp             CCCCSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEECSSCC-CEETTEE-BCCHHHHHHCSSEEEEEECSCGGGHH
T ss_pred             CCCCCcEEEEEcC-CHHHHHHHHHHHhCCCCcEEEEEeccchHHH-HHhhccC-cCCHHHHHhCCCcchhhhcccccccc
Confidence            3456789999999 99999988877653    2334433444331 3344544 45899988766799999999999999


Q ss_pred             HHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE
Q 019500          114 AAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR  153 (340)
Q Consensus       114 ~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir  153 (340)
                      +.+.+|+++|.+.++=-.-..+.++.+++.+.+ +++|..
T Consensus        80 ~~~~~al~~gk~V~~EKP~a~~~~e~~~l~~~a-~~~~~~  118 (172)
T d1lc0a1          80 DYIRQFLQAGKHVLVEYPMTLSFAAAQELWELA-AQKGRV  118 (172)
T ss_dssp             HHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHH-HHTTCC
T ss_pred             cccccccccchhhhcCCCccccHHHHHHHHHHH-HHcCCe
Confidence            999999999976432111234556777787776 666654

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=98.52  E-value=2.2e-07  Score=77.88  Aligned_cols=112  Identities=9%  Similarity=0.034  Sum_probs=80.4

Q ss_pred             CeEEEEeCCCCCcchH-HHHHHHHc-CCeEEEeeCCCCCC-c---eecCc-ccccCHHHhhccCCCcEEEEecChhhHHH
Q 019500           42 NTRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKGG-T---EHLGL-PVFNTVAEAKAETKANASAIYVPPPFAAA  114 (340)
Q Consensus        42 ~iaViVvGasgk~G~~-v~~~l~~~-G~~vv~~VnP~~~g-~---~i~G~-p~y~sl~dip~~~~vDlavi~vp~~~v~~  114 (340)
                      +++|.|+|+ |.+|+. +...+.+. +++++ .++++... +   +-++. +.|.+.+++.++ ++|+++|++|+..+.+
T Consensus         1 tirvgiiG~-G~~~~~~~~~~l~~~~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~iD~V~I~tp~~~H~~   77 (167)
T d1xeaa1           1 SLKIAMIGL-GDIAQKAYLPVLAQWPDIELV-LCTRNPKVLGTLATRYRVSATCTDYRDVLQY-GVDAVMIHAATDVHST   77 (167)
T ss_dssp             CEEEEEECC-CHHHHHTHHHHHTTSTTEEEE-EECSCHHHHHHHHHHTTCCCCCSSTTGGGGG-CCSEEEECSCGGGHHH
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHHhCCCcEEE-EEECCHHHHHHHHHhcccccccccHHHhccc-ccceeccccccccccc
Confidence            478899999 888854 66677665 55654 67765310 1   12454 478999998864 7999999999999999


Q ss_pred             HHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEE-Ecc
Q 019500          115 AILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL-VGP  157 (340)
Q Consensus       115 ~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girv-iGP  157 (340)
                      .+.+|+++|.+.++=-.-+.+.++..++.+++ +++|..+ +|.
T Consensus        78 ~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a-~~~~~~~~vg~  120 (167)
T d1xeaa1          78 LAAFFLHLGIPTFVDKPLAASAQECENLYELA-EKHHQPLYVGF  120 (167)
T ss_dssp             HHHHHHHTTCCEEEESCSCSSHHHHHHHHHHH-HHTTCCEEEEC
T ss_pred             ccccccccccccccCCCCcCCHHHHHHHHHHH-HHcCCEEEEEe
Confidence            99999999988533222355667778888876 6777654 443

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=98.50  E-value=2.8e-07  Score=81.27  Aligned_cols=121  Identities=14%  Similarity=0.157  Sum_probs=85.7

Q ss_pred             cccCcCCeEEEEeCCCCCcchH-HHHHHHHc-CCeEEEeeCCCCCC-c---eecC-----cccccCHHHhhccCCCcEEE
Q 019500           36 AVFVDKNTRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKGG-T---EHLG-----LPVFNTVAEAKAETKANASA  104 (340)
Q Consensus        36 ~lf~p~~iaViVvGasgk~G~~-v~~~l~~~-G~~vv~~VnP~~~g-~---~i~G-----~p~y~sl~dip~~~~vDlav  104 (340)
                      .+-..+.++|.|+|+ |.+|+. +...+... ++++++.++++... +   +-.|     +..|.|++++.+..++|+++
T Consensus        27 ~~~~~~~iriaiIG~-G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~  105 (221)
T d1h6da1          27 PMPEDRRFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVY  105 (221)
T ss_dssp             CCCCCCCEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEE
T ss_pred             CCCCCCCEEEEEEcC-cHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeee
Confidence            344457899999999 888864 55665554 78889888876410 1   1123     34689999988766799999


Q ss_pred             EecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500          105 IYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (340)
Q Consensus       105 i~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN  158 (340)
                      |++|+..+.+.+.+|+++|.+.++=-.-..+.++..++.+.+ +++|+. .+|-|
T Consensus       106 I~tp~~~H~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a-~~~~~~~~v~~~  159 (221)
T d1h6da1         106 IILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAA-KAANKKLMIGYR  159 (221)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHH-HHHTCCEEECCG
T ss_pred             eccchhhhhhHHHHhhhcchhhhcCCCccCCHHHHHHHHHHH-HhcCCcEEEeec
Confidence            999999999999999999986533111234566778888776 566654 45544

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=98.45  E-value=9.4e-07  Score=78.35  Aligned_cols=125  Identities=10%  Similarity=0.040  Sum_probs=86.1

Q ss_pred             cccccCcCCeEEEEeCCCCC---cchHHHHHHHHc--CCeEEEeeCCCCCC-c---e---ecCcccccCHHHhhccCCCc
Q 019500           34 APAVFVDKNTRVICQGITGK---NGTFHTEQAIEY--GTKMVGGVTPKKGG-T---E---HLGLPVFNTVAEAKAETKAN  101 (340)
Q Consensus        34 l~~lf~p~~iaViVvGasgk---~G~~v~~~l~~~--G~~vv~~VnP~~~g-~---~---i~G~p~y~sl~dip~~~~vD  101 (340)
                      +...=..+.++|.|+|+.+.   ++..+...+.+.  ++++++.++|+... +   +   +...+.|.+++++.+..++|
T Consensus         8 ~~~~~~~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD   87 (237)
T d2nvwa1           8 LSTVPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDID   87 (237)
T ss_dssp             GGSSGGGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCS
T ss_pred             cccCCCCCCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccc
Confidence            44444567899999999432   345566677663  68899888886410 1   1   23456799999998766899


Q ss_pred             EEEEecChhhHHHHHHHHHHcCC-----cEEEEecC-CCChhhHHHHHHHHhccCCcEE-EccC
Q 019500          102 ASAIYVPPPFAAAAILEAMEAEL-----DLVVCITE-GIPQHDMVRVKAALNNQSKTRL-VGPN  158 (340)
Q Consensus       102 lavi~vp~~~v~~~v~ea~~~Gv-----k~vvi~t~-Gf~e~~~~~l~~~aar~~girv-iGPN  158 (340)
                      ++++++|+..+.+.+..|+++|+     +.+++==+ +.+.++.+++.+++.++.++.+ +|-|
T Consensus        88 ~V~i~tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~~~~~~~~v~~~  151 (237)
T d2nvwa1          88 MIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQTIICLQ  151 (237)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEEEEECG
T ss_pred             eeeccCCCcchhhHHHHHHHhcccccCCceEEEeccccCCHHHHHHHHHHHhhcCCeeEEEEEC
Confidence            99999999999999999999996     45442222 4455677777776633445653 5543

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.00  E-value=6.4e-05  Score=62.24  Aligned_cols=125  Identities=19%  Similarity=0.323  Sum_probs=86.3

Q ss_pred             cEEEEecChHHHHHHHHHHHhCCCCceE---------------EeecCCCCC-----CCCCHHHHHHHhhcCCCccEEEE
Q 019500          182 RIGIVSRSGTLTYEAVFQTTAVGLGQST---------------CVGIGGDPF-----NGTNFVDCVTKFIADPQTEGIIL  241 (340)
Q Consensus       182 ~valvSQSG~l~~~~~~~~~~~giG~S~---------------~vs~Gn~a~-----~dv~~~d~l~~l~~Dp~T~~I~l  241 (340)
                      +|++||-||+.+..+.|.+.+.|+-+-.               +.+..|-.+     ..-.+.+.++-+.+||++..|++
T Consensus         5 rvaiit~sGG~~~l~aD~~~~~Gl~l~~l~~~t~~~L~~~lp~~~~~~NPlD~~~~~~~~~~~~~l~~~~~d~~vd~v~v   84 (163)
T d2csua3           5 KVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQDPNVDMLIA   84 (163)
T ss_dssp             EEEEEESCHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHHSTTCSEEEE
T ss_pred             eEEEEECChHHHHHHHHHHHHcCCccCCCCHHHHHHHHHhCCCcccCCCcccccCCCCHHHHHHHHHHHHcCCCcCEEEE
Confidence            4999999999999999999988876532               234444320     11237788999999999998877


Q ss_pred             EEcc--C-C-CcHHHHHHHHHHhC---CCCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHc
Q 019500          242 IGEI--G-G-TAEEDAAALIKESG---TEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREA  314 (340)
Q Consensus       242 y~E~--~-g-~~~~~~~~f~~a~r---~~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qa  314 (340)
                      ++-.  . + .........+++++   .+|||++.-.|...                            .....+.|+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpv~~~~~~~~~----------------------------~~~~~~~l~~~  136 (163)
T d2csua3          85 ICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYV----------------------------SEKAKELLEKN  136 (163)
T ss_dssp             EEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTT----------------------------THHHHHHHHTT
T ss_pred             eeccCCcccccHHHHHHHHHHHHHHhcCCCcEEEEECCCCC----------------------------hHHHHHHHHHC
Confidence            6531  1 1 11233444554443   67999877554211                            12346778999


Q ss_pred             CCeecCCHHHHHHHHHHHHH
Q 019500          315 GVTVVESPAKIGAAMLEVFK  334 (340)
Q Consensus       315 Gvv~v~~~~el~~~~~~~~~  334 (340)
                      |+...+++++-..++.++++
T Consensus       137 Gip~f~~pe~a~~Al~~l~~  156 (163)
T d2csua3         137 GIPTYERPEDVASAAYALVE  156 (163)
T ss_dssp             TCCEESSHHHHHHHHHHHHH
T ss_pred             CCCcCCCHHHHHHHHHHHHH
Confidence            99999999999999988764

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.93  E-value=1.5e-05  Score=65.43  Aligned_cols=103  Identities=15%  Similarity=0.072  Sum_probs=72.6

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce---ecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~---i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea  119 (340)
                      +||.++|. |+||+.++++|.+.|++++ ..|+.....+   -.|..+-.+.+|+..  ..|++++++|++.+.+++.++
T Consensus         1 MkIgiIG~-G~mG~~ia~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~~diIi~~v~~~~~~~~~~~~   76 (152)
T d1i36a2           1 LRVGFIGF-GEVAQTLASRLRSRGVEVV-TSLEGRSPSTIERARTVGVTETSEEDVY--SCPVVISAVTPGVALGAARRA   76 (152)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTCEEE-ECCTTCCHHHHHHHHHHTCEECCHHHHH--TSSEEEECSCGGGHHHHHHHH
T ss_pred             CEEEEEcH-HHHHHHHHHHHHHCCCeEE-EEcCchhHHHHHhhhcccccccHHHHHh--hcCeEEEEecCchHHHHHHhh
Confidence            36778899 9999999999999999866 5665541111   235556678888877  599999999999999998887


Q ss_pred             HHcCCcEEEEecCCCChhhHHHHHHHHhccCC
Q 019500          120 MEAELDLVVCITEGIPQHDMVRVKAALNNQSK  151 (340)
Q Consensus       120 ~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~g  151 (340)
                      ...--+. ++-.+-.+.+..+++.+.+ ++.+
T Consensus        77 ~~~~~~~-~id~st~~p~~~~~l~~~~-~~~~  106 (152)
T d1i36a2          77 GRHVRGI-YVDINNISPETVRMASSLI-EKGG  106 (152)
T ss_dssp             HTTCCSE-EEECSCCCHHHHHHHHHHC-SSSE
T ss_pred             cccCCce-eeccCcCCHHHHHHHHHHH-hccC
Confidence            7654344 4444444455556666654 4433

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.84  E-value=5.5e-05  Score=62.52  Aligned_cols=110  Identities=13%  Similarity=0.122  Sum_probs=71.9

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-c--eecCcccccCHHHhhccCCCcEEEEecChhh-HHHHH---
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T--EHLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAI---  116 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~--~i~G~p~y~sl~dip~~~~vDlavi~vp~~~-v~~~v---  116 (340)
                      +|.++|. |+||..++++|.+.||+++ ..|.+... +  .-.|.....+..|+.+  +.|++++++|... +.+++   
T Consensus         2 kIgiIGl-G~MG~~~A~~L~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~e~~~--~~d~ii~~v~~~~~v~~v~~~~   77 (161)
T d1vpda2           2 KVGFIGL-GIMGKPMSKNLLKAGYSLV-VSDRNPEAIADVIAAGAETASTAKAIAE--QCDVIITMLPNSPHVKEVALGE   77 (161)
T ss_dssp             EEEEECC-STTHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTTCEECSSHHHHHH--HCSEEEECCSSHHHHHHHHHST
T ss_pred             EEEEEeh-hHHHHHHHHHHHHCCCeEE-EEeCCcchhHHHHHhhhhhcccHHHHHh--CCCeEEEEcCCHHHHHHHHhCC
Confidence            5778899 9999999999999999955 55554310 1  1256778889999887  5999999998544 44444   


Q ss_pred             HHHHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccC
Q 019500          117 LEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN  158 (340)
Q Consensus       117 ~ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPN  158 (340)
                      +..... .-..+|+-.+-.+.+...++.+.+ ++.|++++...
T Consensus        78 ~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~-~~~g~~~vdap  119 (161)
T d1vpda2          78 NGIIEGAKPGTVLIDMSSIAPLASREISDAL-KAKGVEMLDAP  119 (161)
T ss_dssp             TCHHHHCCTTCEEEECSCCCHHHHHHHHHHH-HTTTCEEEECC
T ss_pred             cchhhccCCCCEEEECCCCCHHHHHHHHHHH-HHcCCceeccc
Confidence            223332 222334333334445555666665 67788887543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.62  E-value=9.2e-05  Score=60.98  Aligned_cols=88  Identities=10%  Similarity=0.129  Sum_probs=60.7

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecC-c-ccccCHHHhhccCCCcEEEEecChhhHHHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLG-L-PVFNTVAEAKAETKANASAIYVPPPFAAAAIL  117 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G-~-p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~  117 (340)
                      ++|.|+|+ |+||+..++.|.+.|++++ ..|++... +.  -.| + ....+++.+.   +.|++++++|+....++++
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~~g~~V~-~~d~~~~~~~~a~~~~~~~~~~~~~~~~~---~~DiIilavp~~~~~~vl~   75 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRRRGHYLI-GVSRQQSTCEKAVERQLVDEAGQDLSLLQ---TAKIIFLCTPIQLILPTLE   75 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTTSCSEEESCGGGGT---TCSEEEECSCHHHHHHHHH
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCCEEE-EEECCchHHHHHHHhhccceeeeeccccc---ccccccccCcHhhhhhhhh
Confidence            36778899 9999999999999999866 67776410 01  122 2 2334555554   4899999999999999999


Q ss_pred             HHHHcC-CcEEEEecCCCC
Q 019500          118 EAMEAE-LDLVVCITEGIP  135 (340)
Q Consensus       118 ea~~~G-vk~vvi~t~Gf~  135 (340)
                      +....- -+.+++-+++..
T Consensus        76 ~l~~~l~~~~iv~~~~s~~   94 (165)
T d2f1ka2          76 KLIPHLSPTAIVTDVASVK   94 (165)
T ss_dssp             HHGGGSCTTCEEEECCSCC
T ss_pred             hhhhhcccccceeeccccc
Confidence            987753 344444344443

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.56  E-value=0.0001  Score=60.45  Aligned_cols=106  Identities=12%  Similarity=0.202  Sum_probs=73.0

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-c---eecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea  119 (340)
                      +|.++|+ |+||+.+++.|.+.|++++ ..+++... +   +-.|+....+..|+.+  ..|+++++++|+.+.+++++.
T Consensus         2 kIg~IG~-G~mG~al~~~l~~~~~~i~-v~~r~~~~~~~l~~~~g~~~~~~~~~~~~--~~dvIilavkp~~~~~vl~~l   77 (152)
T d2ahra2           2 KIGIIGV-GKMASAIIKGLKQTPHELI-ISGSSLERSKEIAEQLALPYAMSHQDLID--QVDLVILGIKPQLFETVLKPL   77 (152)
T ss_dssp             EEEEECC-SHHHHHHHHHHTTSSCEEE-EECSSHHHHHHHHHHHTCCBCSSHHHHHH--TCSEEEECSCGGGHHHHHTTS
T ss_pred             EEEEEec-cHHHHHHHHHHHhCCCeEE-EEcChHHhHHhhccccceeeechhhhhhh--ccceeeeecchHhHHHHhhhc
Confidence            5778899 9999999999999898854 44544210 1   2358888899999987  599999999999998887664


Q ss_pred             HHcCCcEEEEecCCCChhhHHHHHHHHhccCC-cEEEccCC
Q 019500          120 MEAELDLVVCITEGIPQHDMVRVKAALNNQSK-TRLVGPNC  159 (340)
Q Consensus       120 ~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~g-irviGPNc  159 (340)
                       ..+ +.++-+++|.+-+.   +.+.+..+.. +|++ ||.
T Consensus        78 -~~~-~~iis~~agi~~~~---l~~~l~~~~~ivr~m-PN~  112 (152)
T d2ahra2          78 -HFK-QPIISMAAGISLQR---LATFVGQDLPLLRIM-PNM  112 (152)
T ss_dssp             -CCC-SCEEECCTTCCHHH---HHHHHCTTSCEEEEE-CCG
T ss_pred             -ccc-eeEecccccccHHH---HHhhhcccccchhhc-cch
Confidence             233 33556778886544   3343322223 3444 774

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.56  E-value=0.00033  Score=57.69  Aligned_cols=108  Identities=11%  Similarity=0.121  Sum_probs=72.7

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc---eecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHH--
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE--  118 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e--  118 (340)
                      +|.++|. |.||..++++|.+.||++. ..|.+....   .-.|.....++.|+..  ..|++++++|...+.+.+-.  
T Consensus         3 kIg~IGl-G~MG~~iA~~L~~~g~~v~-~~d~~~~~~~~~~~~~~~~~~~~~e~~~--~~diii~~v~~~~~~~~v~~~~   78 (162)
T d3cuma2           3 QIAFIGL-GHMGAPMATNLLKAGYLLN-VFDLVQSAVDGLVAAGASAARSARDAVQ--GADVVISMLPASQHVEGLYLDD   78 (162)
T ss_dssp             EEEEECC-STTHHHHHHHHHHTTCEEE-EECSSHHHHHHHHHTTCEECSSHHHHHT--SCSEEEECCSCHHHHHHHHHST
T ss_pred             EEEEEEE-HHHHHHHHHHHHHCCCeEE-EEECchhhhhhhhhhhccccchhhhhcc--ccCeeeecccchhhHHHHHhcc
Confidence            5677799 9999999999999999854 555443101   1346666778888886  58999999998766665432  


Q ss_pred             --HHHcC-CcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          119 --AMEAE-LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       119 --a~~~G-vk~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                        ..... -..+|+-++-...+...++.+.+ ++.|++++.
T Consensus        79 ~~~~~~l~~g~iiid~st~~p~~~~~~~~~~-~~~gi~~~d  118 (162)
T d3cuma2          79 DGLLAHIAPGTLVLECSTIAPTSARKIHAAA-RERGLAMLD  118 (162)
T ss_dssp             TCHHHHSCTTCEEEECSCCCHHHHHHHHHHH-HHTTCEEEE
T ss_pred             ccccccCCCCCEEEECCCCCHHHHHHHHHHH-HHCCCcEEe
Confidence              22222 23345445555556666666666 677888774

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.47  E-value=6.8e-05  Score=61.35  Aligned_cols=108  Identities=19%  Similarity=0.187  Sum_probs=71.7

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcC-CeEEEeeCCCCCC-c---eecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G-~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e  118 (340)
                      +|.++|+ |+||..+++.|.+.| +++ +..|++..- +   +-.|+.++.+.+++.   +.|+++++++|..+.+++++
T Consensus         2 kI~fIG~-G~MG~ai~~~l~~~~~~~i-~v~~r~~~~~~~l~~~~~~~~~~~~~~v~---~~Div~lavkP~~~~~v~~~   76 (152)
T d1yqga2           2 NVYFLGG-GNMAAAVAGGLVKQGGYRI-YIANRGAEKRERLEKELGVETSATLPELH---SDDVLILAVKPQDMEAACKN   76 (152)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHCSCEE-EEECSSHHHHHHHHHHTCCEEESSCCCCC---TTSEEEECSCHHHHHHHHTT
T ss_pred             EEEEEcC-cHHHHHHHHHHHHCCCCcE-EEEeCChhHHHHhhhhccccccccccccc---ccceEEEecCHHHHHHhHHH
Confidence            5777899 999999999988877 554 467765410 1   135788888887765   38999999999998888877


Q ss_pred             HHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCC
Q 019500          119 AMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCP  160 (340)
Q Consensus       119 a~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~  160 (340)
                      .... -+.++-+.+|.+.+.   +++.+.....+-=+-||..
T Consensus        77 l~~~-~~~viS~~ag~~~~~---l~~~l~~~~~iir~mpn~p  114 (152)
T d1yqga2          77 IRTN-GALVLSVAAGLSVGT---LSRYLGGTRRIVRVMPNTP  114 (152)
T ss_dssp             CCCT-TCEEEECCTTCCHHH---HHHHTTSCCCEEEEECCGG
T ss_pred             Hhhc-ccEEeecccCCCHHH---HHHHhCcCcceEeecccch
Confidence            6433 345565667887544   4343322233322337743

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=97.19  E-value=0.00036  Score=57.85  Aligned_cols=91  Identities=13%  Similarity=0.080  Sum_probs=59.7

Q ss_pred             cCCeEEEEeCCCCCcchH-HHHHHHHc-CCeEEEeeCCCCCCc-----eecCccccc-CHHHhh---ccCCCcEEEEecC
Q 019500           40 DKNTRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKGGT-----EHLGLPVFN-TVAEAK---AETKANASAIYVP  108 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~-v~~~l~~~-G~~vv~~VnP~~~g~-----~i~G~p~y~-sl~dip---~~~~vDlavi~vp  108 (340)
                      .+.++|.|+| +|++|+. +.+.+++. .+++++.++.+..+.     +-.|++.+. +++++.   +..++|++++++|
T Consensus         2 ~kkirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATp   80 (157)
T d1nvmb1           2 NQKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATS   80 (157)
T ss_dssp             CSCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSC
T ss_pred             CCCcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCC
Confidence            4678999999 5999875 45666665 456776666543222     236777654 455543   3235999999999


Q ss_pred             hhhHHHH--HHHHHHcCCcEEEEecC
Q 019500          109 PPFAAAA--ILEAMEAELDLVVCITE  132 (340)
Q Consensus       109 ~~~v~~~--v~ea~~~Gvk~vvi~t~  132 (340)
                      +..+.+.  +.+++++|+.. +-.|+
T Consensus        81 ag~h~~~~~~~~aa~~G~~V-ID~s~  105 (157)
T d1nvmb1          81 ASAHVQNEALLRQAKPGIRL-IDLTP  105 (157)
T ss_dssp             HHHHHHHHHHHHHHCTTCEE-EECST
T ss_pred             chhHHHhHHHHHHHHcCCEE-EEccc
Confidence            9777653  45567778875 44554

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.17  E-value=0.0025  Score=52.20  Aligned_cols=88  Identities=14%  Similarity=0.121  Sum_probs=61.1

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC--------Cc----------eecCcccccCHHHhhccCCCcEEEE
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--------GT----------EHLGLPVFNTVAEAKAETKANASAI  105 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~--------g~----------~i~G~p~y~sl~dip~~~~vDlavi  105 (340)
                      +|+|+|+ |.+|...+..|.+.|+++. .+++...        +.          ......+..+++|..+  +.|++++
T Consensus         3 ~iaIiGa-G~~G~~~A~~l~~~G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~aD~iii   78 (184)
T d1bg6a2           3 TYAVLGL-GNGGHAFAAYLALKGQSVL-AWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK--DADVILI   78 (184)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT--TCSEEEE
T ss_pred             EEEEECc-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhc--CCCEEEE
Confidence            4556699 9999999999999999854 4444310        00          0112233456788765  5899999


Q ss_pred             ecChhhHHHHHHHHHHc-CCcEEEEecCCCC
Q 019500          106 YVPPPFAAAAILEAMEA-ELDLVVCITEGIP  135 (340)
Q Consensus       106 ~vp~~~v~~~v~ea~~~-Gvk~vvi~t~Gf~  135 (340)
                      ++|+..+.+++++.... .-+.+|+++.|..
T Consensus        79 ~v~~~~~~~~~~~i~~~l~~~~~iv~~~g~~  109 (184)
T d1bg6a2          79 VVPAIHHASIAANIASYISEGQLIILNPGAT  109 (184)
T ss_dssp             CSCGGGHHHHHHHHGGGCCTTCEEEESSCCS
T ss_pred             EEchhHHHHHHHHhhhccCCCCEEEEeCCCC
Confidence            99999999999888765 2334566777764

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.17  E-value=0.00048  Score=58.30  Aligned_cols=87  Identities=18%  Similarity=0.213  Sum_probs=65.0

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCc---------e------------ecCcccccCHHHhhccCC
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT---------E------------HLGLPVFNTVAEAKAETK   99 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~---------~------------i~G~p~y~sl~dip~~~~   99 (340)
                      ++||.|.|. |++|+.++|.+.+. ++++++..++.....         .            -.++++...+.++.+  +
T Consensus         1 MIKVaINGf-GRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~--~   77 (178)
T d1b7go1           1 MVNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIK--T   77 (178)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHH--H
T ss_pred             CeEEEEECC-CHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhh--c
Confidence            478999998 99999999999876 678885544432100         0            135566667777765  4


Q ss_pred             CcEEEEecChhhHHHHHHHHHHcCCcEEEEecCC
Q 019500          100 ANASAIYVPPPFAAAAILEAMEAELDLVVCITEG  133 (340)
Q Consensus       100 vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~G  133 (340)
                      +|+++.|||.....+.++..++.|+|.+  ++.+
T Consensus        78 vDiViecTG~f~~~e~a~~hl~~G~KvI--i~~~  109 (178)
T d1b7go1          78 SDIVVDTTPNGVGAQYKPIYLQLQRNAI--FQGG  109 (178)
T ss_dssp             CSEEEECCSTTHHHHHHHHHHHTTCEEE--ECTT
T ss_pred             CCEEEECCCCcCCHHHHHHHHHcCCEEE--EECC
Confidence            9999999999989999999999997763  4544

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.05  E-value=0.0023  Score=53.42  Aligned_cols=92  Identities=8%  Similarity=0.041  Sum_probs=64.0

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEee---CCCCCCceecC-cccc-----------cCHHHhhccCCCcEEEE
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGV---TPKKGGTEHLG-LPVF-----------NTVAEAKAETKANASAI  105 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~V---nP~~~g~~i~G-~p~y-----------~sl~dip~~~~vDlavi  105 (340)
                      +++|+|+||||-.|..+.+.|.++ .+++.+..   ..+..|+.+.. .|.+           ....+..  .++|+++.
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dvvf~   78 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFS--ADVDVVFL   78 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTC--TTCCEEEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhh--cccceeec
Confidence            478999999999999999999997 67765432   12223333211 1111           1122222  26899999


Q ss_pred             ecChhhHHHHHHHHHHcCCcEEEEecCCCCh
Q 019500          106 YVPPPFAAAAILEAMEAELDLVVCITEGIPQ  136 (340)
Q Consensus       106 ~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e  136 (340)
                      +.|.....+.+....+.|++. +-.++.|.-
T Consensus        79 alp~~~s~~~~~~~~~~~~~v-IDlSadfRl  108 (179)
T d2g17a1          79 ATAHEVSHDLAPQFLQAGCVV-FDLSGAFRV  108 (179)
T ss_dssp             CSCHHHHHHHHHHHHHTTCEE-EECSSTTSS
T ss_pred             cccchhHHHHhhhhhhcCcee-ecccccccc
Confidence            999999999999999999886 667887753

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.05  E-value=0.001  Score=55.36  Aligned_cols=107  Identities=12%  Similarity=0.069  Sum_probs=65.6

Q ss_pred             EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee----------cCcccccCHHHhhccCCCcEEEEecCh-hhH
Q 019500           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH----------LGLPVFNTVAEAKAETKANASAIYVPP-PFA  112 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i----------~G~p~y~sl~dip~~~~vDlavi~vp~-~~v  112 (340)
                      |.++|. |+||..++++|.+.||+++ ..|.+... +++          .|.....++.+...  ..|.+++++|+ +.+
T Consensus         5 Ig~IGl-G~MG~~mA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~ii~~~~~~~~v   80 (176)
T d2pgda2           5 IALIGL-AVMGQNLILNMNDHGFVVC-AFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLK--KPRRIILLVKAGQAV   80 (176)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEE-EECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBC--SSCEEEECSCTTHHH
T ss_pred             EEEEeE-hHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHhccccccccchhhhhhhhhhhc--ccceEEEecCchHHH
Confidence            445599 9999999999999999855 55544310 111          12223334444443  58999998887 455


Q ss_pred             HHHHHHHHHcCC-cEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          113 AAAILEAMEAEL-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       113 ~~~v~ea~~~Gv-k~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                      .++.+.....-- ..+|+-++-...++..++.+.+ ++.|++++.
T Consensus        81 ~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~-~~~g~~~ld  124 (176)
T d2pgda2          81 DNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDL-KDKGILFVG  124 (176)
T ss_dssp             HHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHH-HHTTCEEEE
T ss_pred             HHHHHHHHhccccCcEEEecCcchhHHHHHHHHHH-HhcCCceec
Confidence            666666655432 2344444444455556666655 577888874

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.02  E-value=0.0034  Score=51.15  Aligned_cols=87  Identities=15%  Similarity=0.102  Sum_probs=60.6

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCe-EEEeeCCCCCCcee-----cCc--ccccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGTEH-----LGL--PVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~-vv~~VnP~~~g~~i-----~G~--p~y~sl~dip~~~~vDlavi~vp~~~v~~~  115 (340)
                      +|.|+|+ |.||..+++.|.+.|+. .++++|++.  +..     .|.  ..+.+.++.... ..|++++++|++.+.++
T Consensus         3 ~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~--~~~~~a~~~~~~~~~~~~~~~~~~~-~~dlIila~p~~~~~~v   78 (171)
T d2g5ca2           3 NVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINP--ESISKAVDLGIIDEGTTSIAKVEDF-SPDFVMLSSPVRTFREI   78 (171)
T ss_dssp             EEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCH--HHHHHHHHTTSCSEEESCGGGGGGT-CCSEEEECSCHHHHHHH
T ss_pred             EEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECCh--HHHHHHHHhhcchhhhhhhhhhhcc-ccccccccCCchhhhhh
Confidence            3667799 99999999999999874 466888765  321     233  233455554432 58999999999999999


Q ss_pred             HHHHHHc-CCcEEEEecCCC
Q 019500          116 ILEAMEA-ELDLVVCITEGI  134 (340)
Q Consensus       116 v~ea~~~-Gvk~vvi~t~Gf  134 (340)
                      +++.... .-..+++-.++.
T Consensus        79 l~~l~~~~~~~~ii~d~~s~   98 (171)
T d2g5ca2          79 AKKLSYILSEDATVTDQGSV   98 (171)
T ss_dssp             HHHHHHHSCTTCEEEECCSC
T ss_pred             hhhhhccccccccccccccc
Confidence            9998765 444444434444

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.00  E-value=0.00081  Score=56.47  Aligned_cols=84  Identities=15%  Similarity=0.114  Sum_probs=61.6

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCce----e------------------cCcccccCHHHhhccC
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTE----H------------------LGLPVFNTVAEAKAET   98 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~----i------------------~G~p~y~sl~dip~~~   98 (340)
                      ++||.|.|. |++|+.+++.+.+. .+++++.-++......    -                  .++++..++.++.+  
T Consensus         2 ~irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   78 (172)
T d2czca2           2 KVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLE--   78 (172)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHT--
T ss_pred             cEEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhc--
Confidence            578999999 99999999988775 5778754434321010    0                  23344445666554  


Q ss_pred             CCcEEEEecChhhHHHHHHHHHHcCCcEEE
Q 019500           99 KANASAIYVPPPFAAAAILEAMEAELDLVV  128 (340)
Q Consensus        99 ~vDlavi~vp~~~v~~~v~ea~~~Gvk~vv  128 (340)
                      ++|+++.|+|.-...+.++..+++|+|.++
T Consensus        79 ~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi  108 (172)
T d2czca2          79 KVDIIVDATPGGIGAKNKPLYEKAGVKAIF  108 (172)
T ss_dssp             TCSEEEECCSTTHHHHHHHHHHHHTCEEEE
T ss_pred             cCCEEEECCCCCCCHHHHHHHHHcCCCEEE
Confidence            699999999999999999999999999854

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.00  E-value=0.0022  Score=51.66  Aligned_cols=92  Identities=11%  Similarity=0.112  Sum_probs=65.4

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHH
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea  119 (340)
                      +..-+|.|+|..|.||+..+++|.+.||++. ..|...  .        .+.++..+  ..|.+++++|...+.+++++.
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~-~~d~~~--~--------~~~~~~~~--~~~~v~~~~~~~~~~~v~~~~   73 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPIS-ILDRED--W--------AVAESILA--NADVVIVSVPINLTLETIERL   73 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEE-EECTTC--G--------GGHHHHHT--TCSEEEECSCGGGHHHHHHHH
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcE-eccccc--c--------cccchhhh--hccccccccchhhheeeeecc
Confidence            4445677779559999999999999999855 666554  1        22344444  589999999999999999998


Q ss_pred             HHcC-CcEEEEecCCCChhhHHHHHH
Q 019500          120 MEAE-LDLVVCITEGIPQHDMVRVKA  144 (340)
Q Consensus       120 ~~~G-vk~vvi~t~Gf~e~~~~~l~~  144 (340)
                      ...- -..+|+-++....+-.+++.+
T Consensus        74 ~~~~~~~~iiiD~~Svk~~~~~~~~~   99 (152)
T d2pv7a2          74 KPYLTENMLLADLTSVKREPLAKMLE   99 (152)
T ss_dssp             GGGCCTTSEEEECCSCCHHHHHHHHH
T ss_pred             cccccCCceEEEecccCHHHHHHHHH
Confidence            8764 334555555665554555543

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.98  E-value=0.00064  Score=57.75  Aligned_cols=91  Identities=16%  Similarity=0.154  Sum_probs=62.8

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEE-Eee-------------CCCCC-Cce-ecCcccccCHHHhhccCCCcEEEEec
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMV-GGV-------------TPKKG-GTE-HLGLPVFNTVAEAKAETKANASAIYV  107 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv-~~V-------------nP~~~-g~~-i~G~p~y~sl~dip~~~~vDlavi~v  107 (340)
                      +|+|+|+ |.+|+.++..|.+.|.++. +.-             ||++- +-. -..+.+..+++++.+  +.|++++++
T Consensus         9 KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~--~ad~iiiav   85 (189)
T d1n1ea2           9 KAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN--GAEIILFVI   85 (189)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT--TCSCEEECS
T ss_pred             eEEEECC-CHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccC--CCCEEEEcC
Confidence            5677799 9999999999988887743 332             23221 001 123556667888876  589999999


Q ss_pred             ChhhHHHHHHHHH--------HcCCcEEEEecCCCChhh
Q 019500          108 PPPFAAAAILEAM--------EAELDLVVCITEGIPQHD  138 (340)
Q Consensus       108 p~~~v~~~v~ea~--------~~Gvk~vvi~t~Gf~e~~  138 (340)
                      |.....+++++..        +.+.. +++.|-|+....
T Consensus        86 Ps~~~~~~~~~~~~~~~~~~~~~~~~-ii~~tKGie~~t  123 (189)
T d1n1ea2          86 PTQFLRGFFEKSGGNLIAYAKEKQVP-VLVCTKGIERST  123 (189)
T ss_dssp             CHHHHHHHHHHHCHHHHHHHHHHTCC-EEECCCSCCTTT
T ss_pred             cHHHHHHHHHHHHhhhhhhhccCCcE-EEEEECCCccCC
Confidence            9999999888753        44555 466788995444

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.0016  Score=52.57  Aligned_cols=92  Identities=10%  Similarity=0.066  Sum_probs=61.9

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce-e---------cCcccccCHHHhhccCCCcEEEEecChhhH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-H---------LGLPVFNTVAEAKAETKANASAIYVPPPFA  112 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~-i---------~G~p~y~sl~dip~~~~vDlavi~vp~~~v  112 (340)
                      +||+|+|+ |.+|......|.+.|+++. .++......+ .         .......+..+..+  ++|++++++++..+
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~iii~vka~~~   76 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGHEVQ-GWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLA--TSDLLLVTLKAWQV   76 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHH--TCSEEEECSCGGGH
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCCceE-EEEcCHHHhhhhccccCCccccccccccchhhhhc--ccceEEEeecccch
Confidence            47888899 9999999999999999865 5544331011 1         11122223333333  48999999999999


Q ss_pred             HHHHHHHHHcC--CcEEEEecCCCChhh
Q 019500          113 AAAILEAMEAE--LDLVVCITEGIPQHD  138 (340)
Q Consensus       113 ~~~v~ea~~~G--vk~vvi~t~Gf~e~~  138 (340)
                      .++++++...-  -..++.++.|+..++
T Consensus        77 ~~~~~~l~~~~~~~~~Iv~~qNG~~~~~  104 (167)
T d1ks9a2          77 SDAVKSLASTLPVTTPILLIHNGMGTIE  104 (167)
T ss_dssp             HHHHHHHHTTSCTTSCEEEECSSSCTTG
T ss_pred             HHHHHhhccccCcccEEeeccCcccHHH
Confidence            99998887642  233566788986543

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.82  E-value=0.0024  Score=52.20  Aligned_cols=92  Identities=16%  Similarity=0.053  Sum_probs=64.6

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCC--e-EEEeeCCCCCCceec----CcccccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGT--K-MVGGVTPKKGGTEHL----GLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~--~-vv~~VnP~~~g~~i~----G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~  115 (340)
                      .+|+|+||||=.|...++.|.++.|  . +.+.-..+..|+.+.    ..+.....++...  +.|+++.+.|+....+.
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~--~~d~~f~~~~~~~s~~~   79 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFE--GVDIALFSAGSSTSAKY   79 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTT--TCSEEEECSCHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhh--hhhhhhhccCccchhhH
Confidence            4678889999999999999988765  2 333334444444432    1222223333332  58999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCCCChh
Q 019500          116 ILEAMEAELDLVVCITEGIPQH  137 (340)
Q Consensus       116 v~ea~~~Gvk~vvi~t~Gf~e~  137 (340)
                      +.++.+.|++. |-.++.|..+
T Consensus        80 ~~~~~~~~~~V-IDlSsdfR~~  100 (154)
T d2gz1a1          80 APYAVKAGVVV-VDNTSYFRQN  100 (154)
T ss_dssp             HHHHHHTTCEE-EECSSTTTTC
T ss_pred             Hhhhcccccee-hhcChhhhcc
Confidence            99999999986 6788888643

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.79  E-value=0.0024  Score=51.77  Aligned_cols=92  Identities=12%  Similarity=0.026  Sum_probs=65.1

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc---CCeEEEeeCCCCCCceec-Ccc--cccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGTEHL-GLP--VFNTVAEAKAETKANASAIYVPPPFAAAA  115 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~---G~~vv~~VnP~~~g~~i~-G~p--~y~sl~dip~~~~vDlavi~vp~~~v~~~  115 (340)
                      .++|.|+||||-.|....+.|.+.   .+++...-..+..|+.+. ..+  .+.++++... .++|+++.+.|.....+.
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~-~~~d~vf~a~p~~~s~~~   80 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDF-SSVGLAFFAAAAEVSRAH   80 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCG-GGCSEEEECSCHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhh-ccceEEEecCCcchhhhh
Confidence            467888899999999999988753   345665556666666542 111  1222333222 258999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCCCC
Q 019500          116 ILEAMEAELDLVVCITEGIP  135 (340)
Q Consensus       116 v~ea~~~Gvk~vvi~t~Gf~  135 (340)
                      +..+.++|++. +-.++.|.
T Consensus        81 ~~~~~~~g~~V-ID~Ss~fR   99 (144)
T d2hjsa1          81 AERARAAGCSV-IDLSGALE   99 (144)
T ss_dssp             HHHHHHTTCEE-EETTCTTT
T ss_pred             ccccccCCceE-Eeechhhc
Confidence            99999999875 56777775

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.0024  Score=53.72  Aligned_cols=89  Identities=19%  Similarity=0.151  Sum_probs=59.5

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEee-CCCCC-CceecCcccc-------cCHHHhhccCCCcEEEEecCh---
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKG-GTEHLGLPVF-------NTVAEAKAETKANASAIYVPP---  109 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~V-nP~~~-g~~i~G~p~y-------~sl~dip~~~~vDlavi~vp~---  109 (340)
                      +-+|+|.|+||..|+.+++.|++.|+++...+ ||... ...-.++.++       .++.++..  ++|+++.++..   
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~--~~d~vi~~~g~~~~   80 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVA--GQDAVIVLLGTRND   80 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHT--TCSEEEECCCCTTC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhc--CCCEEEEEeccCCc
Confidence            34688889999999999999999999977554 34321 0111222222       24444444  58999987743   


Q ss_pred             --------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          110 --------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       110 --------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                              +....+++.+.++|++.+|.+++
T Consensus        81 ~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss  111 (205)
T d1hdoa_          81 LSPTTVMSEGARNIVAAMKAHGVDKVVACTS  111 (205)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             hhhhhhhHHHHHHHHHHHHhcCCCeEEEEee
Confidence                    23456788888899998776665

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.75  E-value=0.0014  Score=53.33  Aligned_cols=106  Identities=8%  Similarity=-0.046  Sum_probs=62.9

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC--CceecCccccc-CHHHhhccCCCcEEEEecChhh-HHHHHHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--GTEHLGLPVFN-TVAEAKAETKANASAIYVPPPF-AAAAILEA  119 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~--g~~i~G~p~y~-sl~dip~~~~vDlavi~vp~~~-v~~~v~ea  119 (340)
                      ||.++|. |+||..++++|.+.|+.++  .|....  .+......... +.+++.   +.|++++++|... +.......
T Consensus         2 kIg~IGl-G~MG~~ma~~L~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~v~~~~~~l   75 (156)
T d2cvza2           2 KVAFIGL-GAMGYPMAGHLARRFPTLV--WNRTFEKALRHQEEFGSEAVPLERVA---EARVIFTCLPTTREVYEVAEAL   75 (156)
T ss_dssp             CEEEECC-STTHHHHHHHHHTTSCEEE--ECSSTHHHHHHHHHHCCEECCGGGGG---GCSEEEECCSSHHHHHHHHHHH
T ss_pred             eEEEEeH-HHHHHHHHHHHHhCCCEEE--EeCCHHHHHHHHHHcCCccccccccc---ceeEEEecccchhhhhhhhccc
Confidence            3556699 9999999999999888765  343220  01111111222 344443   3788888887754 34444444


Q ss_pred             HHcCC-cEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          120 MEAEL-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       120 ~~~Gv-k~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                      ..... ..+|+-++-.+.+..+++.+.+ ++.|++++.
T Consensus        76 ~~~~~~~~~iid~sT~~p~~~~~~~~~~-~~~gi~~ld  112 (156)
T d2cvza2          76 YPYLREGTYWVDATSGEPEASRRLAERL-REKGVTYLD  112 (156)
T ss_dssp             TTTCCTTEEEEECSCCCHHHHHHHHHHH-HTTTEEEEE
T ss_pred             cccccccccccccccCCHHHHHHHHHHH-HHcCCeEEe
Confidence            44332 3345445555566666777766 678999884

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.73  E-value=0.001  Score=56.18  Aligned_cols=119  Identities=24%  Similarity=0.372  Sum_probs=82.7

Q ss_pred             cccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC---ceecCcccccCHHHhhccCCCcEEEEecChhhH
Q 019500           36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG---TEHLGLPVFNTVAEAKAETKANASAIYVPPPFA  112 (340)
Q Consensus        36 ~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g---~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v  112 (340)
                      .+++.+.++|+  |. |..|+.++.||++.|.+++-+.-|....   .+-.|..+++ ++|...  .-|++.+.+|.+..
T Consensus        12 ~~ik~k~IaVi--GY-GsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~~-~~eA~~--~aDiim~L~PD~~q   85 (182)
T d1np3a2          12 SIIQGKKVAII--GY-GSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVAD-VKTAVA--AADVVMILTPDEFQ   85 (182)
T ss_dssp             HHHHTSCEEEE--CC-SHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEEC-HHHHHH--TCSEEEECSCHHHH
T ss_pred             HHHCCCEEEEE--ee-CcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhcccccc-HHHHhh--hcCeeeeecchHHH
Confidence            46677777766  98 8899999999999999977566665310   1346888764 777766  48999999999999


Q ss_pred             HHHHHHHHHcCC--cEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcc
Q 019500          113 AAAILEAMEAEL--DLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVI  163 (340)
Q Consensus       113 ~~~v~ea~~~Gv--k~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~  163 (340)
                      .++-++-++...  ...+.|+.||+-.-. .+.  -.+.-++.++-|-+.|-.
T Consensus        86 ~~vy~~~I~p~lk~g~~L~FaHGfnIh~~-~I~--pp~~vdV~mvAPKgpG~~  135 (182)
T d1np3a2          86 GRLYKEEIEPNLKKGATLAFAHGFSIHYN-QVV--PRADLDVIMIAPKAPGHT  135 (182)
T ss_dssp             HHHHHHHTGGGCCTTCEEEESCCHHHHTT-SSC--CCTTCEEEEEEESSCSHH
T ss_pred             HHHHHHhhhhhcCCCcEEEEeccceEEee-eee--cCCCCceEeeccccccch
Confidence            998887777543  346789999952210 000  012344667777777743

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.66  E-value=0.0046  Score=49.79  Aligned_cols=105  Identities=15%  Similarity=0.130  Sum_probs=68.8

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce----ecCccc-----c--cCHHHhhccCCCcEEEEecChh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE----HLGLPV-----F--NTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~----i~G~p~-----y--~sl~dip~~~~vDlavi~vp~~  110 (340)
                      -+|+|+|+ |.+|+.++++|.+.|++++ .+|.+... ++    ......     .  ..+++...  ..|.++.++|..
T Consensus         3 K~IliiGa-G~~G~~~a~~L~~~g~~V~-v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~i~~~~~~   78 (182)
T d1e5qa1           3 KSVLMLGS-GFVTRPTLDVLTDSGIKVT-VACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVA--KHDLVISLIPYT   78 (182)
T ss_dssp             CEEEEECC-STTHHHHHHHHHTTTCEEE-EEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHT--TSSEEEECSCGG
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCEEE-EEECChHHHHHHHhcccccccccccccchhhhHhhhh--ccceeEeeccch
Confidence            35777899 9999999999999999855 77765410 11    111111     1  12334343  579999999999


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEE
Q 019500          111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (340)
Q Consensus       111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi  155 (340)
                      .....+..|.+.+.+.+   ......+...++.+.+ ++.+..++
T Consensus        79 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~-~~~~~~~~  119 (182)
T d1e5qa1          79 FHATVIKSAIRQKKHVV---TTSYVSPAMMELDQAA-KDAGITVM  119 (182)
T ss_dssp             GHHHHHHHHHHHTCEEE---CSSCCCHHHHHTHHHH-HHTTCEEE
T ss_pred             hhhHHHHHHHhhcccee---ecccCcHHHHHHHHHh-ccccceee
Confidence            99999999999998752   3333334455555544 45555544

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=96.61  E-value=0.0048  Score=50.33  Aligned_cols=91  Identities=13%  Similarity=0.019  Sum_probs=60.3

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc-C---CeEEEeeCCCCCCceecC----cccccCHH-HhhccCCCcEEEEecChhhHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY-G---TKMVGGVTPKKGGTEHLG----LPVFNTVA-EAKAETKANASAIYVPPPFAA  113 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~-G---~~vv~~VnP~~~g~~i~G----~p~y~sl~-dip~~~~vDlavi~vp~~~v~  113 (340)
                      +||.|+|+||-.|+..++.|.++ .   .++.+.-..+..|+.+.-    ...+...+ +...  ++|+++.|+|.+...
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~--~~DvvF~alp~~~s~   78 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLK--QLDAVITCQGGSYTE   78 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHT--TCSEEEECSCHHHHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhc--cccEEEEecCchHHH
Confidence            36788899999999999887753 2   345433333333333211    11221111 2223  599999999999999


Q ss_pred             HHHHHHHHcCCc-EEEEecCCCC
Q 019500          114 AAILEAMEAELD-LVVCITEGIP  135 (340)
Q Consensus       114 ~~v~ea~~~Gvk-~vvi~t~Gf~  135 (340)
                      +.+..+.+.|.+ .+|=.++.|.
T Consensus        79 ~~~~~l~~~g~~~~VIDlSsdfR  101 (147)
T d1mb4a1          79 KVYPALRQAGWKGYWIDAASTLR  101 (147)
T ss_dssp             HHHHHHHHTTCCSEEEESSSTTT
T ss_pred             HHhHHHHHcCCceEEEeCCcccc
Confidence            999999999987 4566777774

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.55  E-value=0.005  Score=51.67  Aligned_cols=90  Identities=10%  Similarity=-0.017  Sum_probs=63.8

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCceec-------C-ccc-ccCHHHhhccCCCcEEEEecChhh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL-------G-LPV-FNTVAEAKAETKANASAIYVPPPF  111 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~i~-------G-~p~-y~sl~dip~~~~vDlavi~vp~~~  111 (340)
                      +++|.|+||||-.|..+++.|.++ .+++.+...-+..|+.+.       + ... ..+.+++.+  ++|++..++|...
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~--~~dvvf~a~p~~~   78 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSK--NCDVLFTALPAGA   78 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHH--HCSEEEECCSTTH
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhcc--ccceEEEccccHH
Confidence            478999999999999999999887 456776655555555432       1 111 124556654  4999999999998


Q ss_pred             HHHHHHHHHHcCCcEEEEecCCCCh
Q 019500          112 AAAAILEAMEAELDLVVCITEGIPQ  136 (340)
Q Consensus       112 v~~~v~ea~~~Gvk~vvi~t~Gf~e  136 (340)
                      ..+.+.+.  ++++ +|-+++.|.-
T Consensus        79 s~~~~~~~--~~~~-VIDlSadfRl  100 (176)
T d1vkna1          79 SYDLVREL--KGVK-IIDLGADFRF  100 (176)
T ss_dssp             HHHHHTTC--CSCE-EEESSSTTTC
T ss_pred             HHHHHHhh--ccce-EEecCccccc
Confidence            88777652  5665 4778888864

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.018  Score=46.67  Aligned_cols=89  Identities=11%  Similarity=0.012  Sum_probs=58.1

Q ss_pred             EEEEeCCCCCcchHHHHHHHHc-CC---eEEEeeCCCCCCceec----Cccccc--CHHHhhccCCCcEEEEecChhhHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEY-GT---KMVGGVTPKKGGTEHL----GLPVFN--TVAEAKAETKANASAIYVPPPFAA  113 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~-G~---~vv~~VnP~~~g~~i~----G~p~y~--sl~dip~~~~vDlavi~vp~~~v~  113 (340)
                      +|.|+||||-.|+...+.|.+. .+   ++++.-..+..|..+.    ......  +..++.   ++|+++.++|.+...
T Consensus         3 kVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~---~~DivF~a~~~~~s~   79 (146)
T d1t4ba1           3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALK---ALDIIVTCQGGDYTN   79 (146)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHH---TCSEEEECSCHHHHH
T ss_pred             EEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhh---cCcEEEEecCchHHH
Confidence            6778899999999999877654 22   3443333333333321    112222  223333   599999999999999


Q ss_pred             HHHHHHHHcCCcE-EEEecCCCC
Q 019500          114 AAILEAMEAELDL-VVCITEGIP  135 (340)
Q Consensus       114 ~~v~ea~~~Gvk~-vvi~t~Gf~  135 (340)
                      +...++.++|.+. ++=.++-|.
T Consensus        80 ~~~~~~~~~g~~~~VID~Ss~fR  102 (146)
T d1t4ba1          80 EIYPKLRESGWQGYWIDAASSLR  102 (146)
T ss_dssp             HHHHHHHHTTCCCEEEECSSTTT
T ss_pred             HhhHHHHhcCCCeecccCCcccc
Confidence            9999999999874 444555564

>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.48  E-value=0.027  Score=45.81  Aligned_cols=94  Identities=18%  Similarity=0.194  Sum_probs=72.1

Q ss_pred             CCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCc-HHHHHHHHH
Q 019500          180 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTA-EEDAAALIK  258 (340)
Q Consensus       180 ~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~-~~~~~~f~~  258 (340)
                      .|+||++.--++++.+.+|.....|--..-|.-+|+.+ .--.+.+.++.+.+||+.|+|++=+=++=+. ..-++-+.+
T Consensus        18 dG~IG~i~NGAGlaMaTmD~i~~~Gg~pANFlDiGGga-~~e~v~~al~iil~d~~Vk~IlINIfGGI~rcD~vA~GIv~   96 (148)
T d1eucb1          18 DGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGV-KESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITK   96 (148)
T ss_dssp             SCSEEEEESSHHHHHHHHHHHHHTTCCBSEEEECCSSC-CHHHHHHHHHHTTSCTTCCEEEEEEECSSSCHHHHHHHHHH
T ss_pred             cCcEEEEecCCccchhHHHHHHHcCCCeeeEEecCCCC-CHHHHHHHHHHHHCCCCccEEEEEeeEeehhHHHHHHHHHH
Confidence            49999999999999999999999999999999999987 2356888999999999999998643321111 122344444


Q ss_pred             HhC---CCCCEEEEEeCCC
Q 019500          259 ESG---TEKPIVAFIAGLT  274 (340)
Q Consensus       259 a~r---~~KPVvvlk~Grs  274 (340)
                      +.+   .++|||+=..|..
T Consensus        97 A~~e~~~~iPiVVRL~Gtn  115 (148)
T d1eucb1          97 ACRELELKVPLVVRLEGTN  115 (148)
T ss_dssp             HHHHHTCCSCEEEEEESTT
T ss_pred             HHHhcCCCccEEEEeccCC
Confidence            443   7899999887743

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.32  E-value=0.0038  Score=52.05  Aligned_cols=89  Identities=16%  Similarity=0.190  Sum_probs=61.8

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEE-Ee--eC-------------CCCCCceecC--cccccCHHHhhccCCCcEEE
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMV-GG--VT-------------PKKGGTEHLG--LPVFNTVAEAKAETKANASA  104 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv-~~--Vn-------------P~~~g~~i~G--~p~y~sl~dip~~~~vDlav  104 (340)
                      ++|.|+|+ |.+|..++..|.+.|.++. +.  .|             |... ..+..  +....++++..+  +.|+++
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~--~ad~Ii   76 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLG-VKLNGVEIFWPEQLEKCLE--NAEVVL   76 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTT-BCCCSEEEECGGGHHHHHT--TCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhc-chhccccccccccHHHHHh--ccchhh
Confidence            36778899 9999999999999898844 32  11             1110 11112  223456777665  589999


Q ss_pred             EecChhhHHHHHHHHHHc-CCcEEEEecCCCC
Q 019500          105 IYVPPPFAAAAILEAMEA-ELDLVVCITEGIP  135 (340)
Q Consensus       105 i~vp~~~v~~~v~ea~~~-Gvk~vvi~t~Gf~  135 (340)
                      +++|+..+.+++++.... .-+.+++.+.|+-
T Consensus        77 ~avps~~~~~~~~~l~~~l~~~~ii~~tkg~~  108 (180)
T d1txga2          77 LGVSTDGVLPVMSRILPYLKDQYIVLISKGLI  108 (180)
T ss_dssp             ECSCGGGHHHHHHHHTTTCCSCEEEECCCSEE
T ss_pred             cccchhhhHHHHHhhccccccceecccccCcc
Confidence            999999999999997764 2356677777864

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.12  E-value=0.0062  Score=50.79  Aligned_cols=89  Identities=17%  Similarity=0.184  Sum_probs=60.6

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCce----e------------------cCcccccCHHHhhccC
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTE----H------------------LGLPVFNTVAEAKAET   98 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~----i------------------~G~p~y~sl~dip~~~   98 (340)
                      +++|.|.|. |++|+.+.+.+.+. .+++++.-++...-..    .                  .++++..++.++.+  
T Consensus         1 M~~VgINGf-GRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~--   77 (171)
T d1cf2o1           1 MKAVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD--   77 (171)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH--
T ss_pred             CeEEEEEcC-cHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhc--
Confidence            467889998 99999999988776 4677743222210010    0                  13344444555544  


Q ss_pred             CCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCC
Q 019500           99 KANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIP  135 (340)
Q Consensus        99 ~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~  135 (340)
                      ++|+++.|+|.-...+.++.-+++|+|.+  ++++-+
T Consensus        78 ~vDvViEcTG~f~~~~~~~~hl~~G~K~v--i~~~~~  112 (171)
T d1cf2o1          78 EADIVIDCTPEGIGAKNLKMYKEKGIKAI--FQGGEK  112 (171)
T ss_dssp             TCSEEEECCSTTHHHHHHHHHHHTTCEEE--ECTTSC
T ss_pred             CCCEEEEccCCCCCHHHHHHHHHcCCCEE--EECCCC
Confidence            59999999999999999999999999853  354433

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.09  E-value=0.0034  Score=52.68  Aligned_cols=93  Identities=15%  Similarity=0.170  Sum_probs=63.3

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCceec---------CcccccCHHHhhccCCCcEEEEecCh
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL---------GLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~i~---------G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      -+.+||.|+|+||-.|...++.|.++ .+++.+....+..|+.+.         ..+......+... .++|++..++|.
T Consensus         3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dvvf~alp~   81 (183)
T d2cvoa1           3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADF-SNVDAVFCCLPH   81 (183)
T ss_dssp             SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCG-GGCSEEEECCSS
T ss_pred             CCccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhh-cccceeeecccc
Confidence            36899999999999999999999987 567765655555555431         1222222222221 258999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCC
Q 019500          110 PFAAAAILEAMEAELDLVVCITEGIP  135 (340)
Q Consensus       110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~  135 (340)
                      ....+.+....+.+ +. ++.+++|.
T Consensus        82 ~~s~~~~~~l~~~~-~~-v~~~~~~~  105 (183)
T d2cvoa1          82 GTTQEIIKGLPQEL-KI-VDLSADFR  105 (183)
T ss_dssp             SHHHHHHHTSCSSC-EE-EECSSTTT
T ss_pred             chHHHHHHHHHhcC-cc-cccchhhh
Confidence            99999887765543 33 55677654

>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.11  Score=41.99  Aligned_cols=120  Identities=15%  Similarity=0.224  Sum_probs=86.3

Q ss_pred             CCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCc-HHHHHHHHH
Q 019500          180 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTA-EEDAAALIK  258 (340)
Q Consensus       180 ~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~-~~~~~~f~~  258 (340)
                      .|+||++.--++++.+.+|.....|--..-|.-+|+.+ ..-.+.+.++.+..||+.|+|++=+=++=+. ..-++-+.+
T Consensus        18 dG~Ig~i~nGAGlamaTmD~i~~~Gg~pANFlDiGG~a-~~e~v~~al~lil~d~~vk~IlINifGGI~rcd~vA~GIv~   96 (150)
T d2nu7b1          18 DGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGA-TKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIG   96 (150)
T ss_dssp             SSSEEEEESSHHHHHHHHHHHHHTTCCBCEEEECCSCC-CHHHHHHHHHHHHTSTTCCEEEEEEESCSSCHHHHHHHHHH
T ss_pred             cCcEEEEEcCCccchhhHHHHHHCCCCeeEEEecCCCc-cHHHHHHHHHHHHcCCCCCEEEEEEeeeeehhHHHHHHHHH
Confidence            49999999999999999999999999999999999886 2446788999999999999998854331111 122234444


Q ss_pred             HhC---CCCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCe--ecCCHHHHHHHH
Q 019500          259 ESG---TEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVT--VVESPAKIGAAM  329 (340)
Q Consensus       259 a~r---~~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv--~v~~~~el~~~~  329 (340)
                      +++   .++|||+=-.|..+                             +.-...|+++|+-  .++|++|-...+
T Consensus        97 A~k~~~~~iPiVVRl~Gtn~-----------------------------eeg~~iL~~~gl~i~~~~~l~eAa~~a  143 (150)
T d2nu7b1          97 AVAEVGVNVPVVVRLEGNNA-----------------------------ELGAKKLADSGLNIIAAKGLTDAAQQV  143 (150)
T ss_dssp             HHHHHTCCSCEEEEEESTTH-----------------------------HHHHHHHHHHCSSEEECSSHHHHHHHH
T ss_pred             HHHhcCCCCcEEEEecCCCH-----------------------------HHHHHHHHHCCCCeEEeCCHHHHHHHH
Confidence            444   78999987766333                             2345678888864  456655554443

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.65  E-value=0.016  Score=47.46  Aligned_cols=111  Identities=20%  Similarity=0.150  Sum_probs=63.9

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc-ee----------cCcccccCHHHhhcc-CCCcEEEEecChh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-EH----------LGLPVFNTVAEAKAE-TKANASAIYVPPP  110 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~-~i----------~G~p~y~sl~dip~~-~~vDlavi~vp~~  110 (340)
                      ++|.++|. |+||..++++|.+.||++. ..|++.... ++          .......+.+++... ...+.+.+++++.
T Consensus         2 MkIGvIGl-G~MG~~ma~~L~~~G~~V~-~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (178)
T d1pgja2           2 MDVGVVGL-GVMGANLALNIAEKGFKVA-VFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAG   79 (178)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCS
T ss_pred             CEEEEEee-hHHHHHHHHHHHHCCCeEE-EEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCc
Confidence            46777899 9999999999999999954 566543100 01          112334455555421 1356666666654


Q ss_pred             -hHHHHHHHHHHcCCc-EEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          111 -FAAAAILEAMEAELD-LVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       111 -~v~~~v~ea~~~Gvk-~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                       ....++......-.+ .+++-++-...++..++.+.+ ++.++.++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l-~~~~~~~ld  126 (178)
T d1pgja2          80 AATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQL-EAAGLRFLG  126 (178)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHH-HTTTCEEEE
T ss_pred             chhhhhhhhhhhhccccceecccCccchhHHHHHHHHH-hhcceeEec
Confidence             444555555544432 234334434445555566555 567777764

>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein TM0796
species: Thermotoga maritima [TaxId: 2336]

Probab=95.40  E-value=0.29  Score=44.49  Aligned_cols=167  Identities=19%  Similarity=0.204  Sum_probs=94.8

Q ss_pred             CcccccCcCCeEEEEeCCC-CCcchHHHHHHHHc--CCeEEEeeCCCCCCce----e----cCcccccCHHHhhccCCCc
Q 019500           33 PAPAVFVDKNTRVICQGIT-GKNGTFHTEQAIEY--GTKMVGGVTPKKGGTE----H----LGLPVFNTVAEAKAETKAN  101 (340)
Q Consensus        33 ~l~~lf~p~~iaViVvGas-gk~G~~v~~~l~~~--G~~vv~~VnP~~~g~~----i----~G~p~y~sl~dip~~~~vD  101 (340)
                      +|.++|+|+.-+++...-. +.........|++|  .+.++ .|+.+..|+.    +    .++|+|.|+++..+. .+|
T Consensus         2 ~~~~m~~p~~~a~Il~~g~~~~~~gKTa~gLlRy~~~~~v~-~V~~~~aG~~~~~~l~g~~~~IPIv~s~~~A~~~-g~~   79 (338)
T d2g0ta1           2 DLWKLYQPGTPAAIVAWGQLGTAHAKTTYGLLRHSRLFKPV-CVVAEHEGKMASDFVKPVRYDVPVVSSVEKAKEM-GAE   79 (338)
T ss_dssp             CHHHHSCTTEEEEEECTTTTTSGGGHHHHHHHHHCSSEEEE-EEESSCTTCBGGGTCC-CCSCCBEESSHHHHHHT-TCC
T ss_pred             ChhHhcCCCCCEEEEeCCCcCCCCchHhhhHHhccCCCeEE-EEECCCCCCchhhhcCCCCCCCCEeCCHHHHHhc-CCC
Confidence            4788999988777755521 11112233344455  24455 4444444432    2    279999999999874 799


Q ss_pred             EEEEecCh------hhHHHHHHHHHHcCCcEEEEecCCCC--hhhHHHHHHHHhccCCcEEEccCCCCcccCC-Cccccc
Q 019500          102 ASAIYVPP------PFAAAAILEAMEAELDLVVCITEGIP--QHDMVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGI  172 (340)
Q Consensus       102 lavi~vp~------~~v~~~v~ea~~~Gvk~vvi~t~Gf~--e~~~~~l~~~aar~~girviGPNc~Gi~~p~-~~~~~~  172 (340)
                      ..|+-+.+      +...+.+.+|+++|... +   +|+-  -.+..++.+++ +++|.+++==.     .|. .+.+  
T Consensus        80 ~liiGvAp~GG~lp~~w~~~i~~Al~~Gl~I-v---sGLH~~L~ddpel~~~A-~~~g~~i~DvR-----~p~~~l~v--  147 (338)
T d2g0ta1          80 VLIIGVSNPGGYLEEQIATLVKKALSLGMDV-I---SGLHFKISQQTEFLKIA-HENGTRIIDIR-----IPPLELDV--  147 (338)
T ss_dssp             EEEECCCSCCHHHHHHHHHHHHHHHHTTCEE-E---ECCCC--CCHHHHHHHH-HHHTCCEEESS-----SCCSSCCC--
T ss_pred             EEEEEecccCCcCCHHHHHHHHHHHHcCCeE-E---ecchhhhccCHHHHHHH-HhCCCEEEEee-----CCCCccch--
Confidence            99997743      56678999999999875 3   3542  23334455554 67777666322     121 1111  


Q ss_pred             CCC--CCCCCCcEEEEec---ChHHH--HHHHHHHHhCCCCceEEeecC
Q 019500          173 MPG--YIHKPGRIGIVSR---SGTLT--YEAVFQTTAVGLGQSTCVGIG  214 (340)
Q Consensus       173 ~~~--~~~~~G~valvSQ---SG~l~--~~~~~~~~~~giG~S~~vs~G  214 (340)
                      ...  ...+.=+|.++.-   .|=+.  .++...++++|+- +.|+.||
T Consensus       148 ~~G~~~~~~~~rvl~vGTDca~GK~tTal~l~~~l~~~G~~-a~fiaTG  195 (338)
T d2g0ta1         148 LRGGIYRKKIKVVGVFGTDCVVGKRTTAVQLWERALEKGIK-AGFLATG  195 (338)
T ss_dssp             CCSGGGGCCSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCC-EEEEECS
T ss_pred             hhcchhccCCcEEEEeccCccccHHHHHHHHHHHHHhCCCC-eeEEEcC
Confidence            111  0122234666654   44333  4456777788764 3466665

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=95.30  E-value=0.021  Score=49.45  Aligned_cols=164  Identities=12%  Similarity=0.087  Sum_probs=94.2

Q ss_pred             cccccCc-CCeEEEEeCCCCCcchHHHHHHHHcC------CeEEEeeCCCCCC---ceecCcccc----cCHHHhhccCC
Q 019500           34 APAVFVD-KNTRVICQGITGKNGTFHTEQAIEYG------TKMVGGVTPKKGG---TEHLGLPVF----NTVAEAKAETK   99 (340)
Q Consensus        34 l~~lf~p-~~iaViVvGasgk~G~~v~~~l~~~G------~~vv~~VnP~~~g---~~i~G~p~y----~sl~dip~~~~   99 (340)
                      |...|+. |.++  |+|. |..|+.++.||++.|      .+++.+..+...-   .+-.|.++.    -+++|...  .
T Consensus        37 ~~~~~kg~KkIa--ViGY-GsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~--~  111 (226)
T d1qmga2          37 LPDAFKGIKQIG--VIGW-GSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETIS--G  111 (226)
T ss_dssp             HHHHTTTCSEEE--EECC-SSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHH--T
T ss_pred             hHHHhcCCCEEE--EEEe-ccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHh--h
Confidence            4445544 5554  5598 899999999999954      6666577665311   124676533    25777765  5


Q ss_pred             CcEEEEecChhhHHHHHHHHHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCCCc-----ccccC
Q 019500          100 ANASAIYVPPPFAAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGEC-----KIGIM  173 (340)
Q Consensus       100 vDlavi~vp~~~v~~~v~ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~~~-----~~~~~  173 (340)
                      -|++++.+|.+...++-++.... .-...+.|+.||+-.-...+.-..-+.-++-++-|-++|-..-...     ..++ 
T Consensus       112 ADiVmiLlPDe~Q~~vy~~I~p~Lk~G~~L~FaHGFnI~~~~~~~~~~p~dvdVimVAPKgPGh~VR~~Y~~Gk~~~G~-  190 (226)
T d1qmga2         112 SDLVLLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGA-  190 (226)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHHHTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTTTCC-
T ss_pred             CCEEEEecchHHHHHHHHHHHHhcCCCceeeecchhhhhhceeeecccCCCceEEEECCCCCCchHHHHHHcccccCCC-
Confidence            89999999999999988763321 2334677999995321111100001233455677998885432100     0011 


Q ss_pred             CCCCCCCCcEEEEec-ChHHHHHHHHHHHhCCCCc
Q 019500          174 PGYIHKPGRIGIVSR-SGTLTYEAVFQTTAVGLGQ  207 (340)
Q Consensus       174 ~~~~~~~G~valvSQ-SG~l~~~~~~~~~~~giG~  207 (340)
                          --|.-||+--- ||.----.+.|+..-|-|+
T Consensus       191 ----GVP~LiAV~QD~sG~A~~~alayA~aIG~g~  221 (226)
T d1qmga2         191 ----GINSSFAVHQDVDGRATDVALGWSIALGSPF  221 (226)
T ss_dssp             ----CCCEEEEEEECSSSCHHHHHHHHHHHHTCSE
T ss_pred             ----CceeEEEEEECCCCcHHHHHHHHHHhCCCCc
Confidence                12334555543 5544444556666555554

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.05  E-value=0.031  Score=46.61  Aligned_cols=61  Identities=23%  Similarity=0.280  Sum_probs=47.5

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~  110 (340)
                      .+|.|+|. |++|+.+++.+..+|.+++ ..+|..  .+. ..+.+.+++++..  ..|++++++|-.
T Consensus        43 k~vgIiG~-G~IG~~va~~l~~~g~~v~-~~d~~~--~~~-~~~~~~~l~ell~--~sDiv~~~~pl~  103 (181)
T d1qp8a1          43 EKVAVLGL-GEIGTRVGKILAALGAQVR-GFSRTP--KEG-PWRFTNSLEEALR--EARAAVCALPLN  103 (181)
T ss_dssp             CEEEEESC-STHHHHHHHHHHHTTCEEE-EECSSC--CCS-SSCCBSCSHHHHT--TCSEEEECCCCS
T ss_pred             ceEEEecc-ccccccceeeeeccccccc-cccccc--ccc-ceeeeechhhhhh--ccchhhcccccc
Confidence            34666799 9999999999999999866 677765  222 2345678999887  599999999863

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=95.00  E-value=0.016  Score=48.14  Aligned_cols=88  Identities=13%  Similarity=-0.021  Sum_probs=63.6

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC--------ce-----------------ecC--ccccc--CHHH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG--------TE-----------------HLG--LPVFN--TVAE   93 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g--------~~-----------------i~G--~p~y~--sl~d   93 (340)
                      ++|.|.|. ||.|+.+.|.+.+.++++++.-+|....        ++                 +.|  ++++.  +.++
T Consensus         1 ikigINGf-GRIGR~~~R~l~~~~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~~   79 (168)
T d2g82a1           1 MKVGINGF-GRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKE   79 (168)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGG
T ss_pred             CEEEEECC-cHHHHHHHHHHhcCCCEEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCChHH
Confidence            57889999 9999999998888889888543332100        01                 123  23443  5777


Q ss_pred             hhcc-CCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500           94 AKAE-TKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus        94 ip~~-~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      +|-. .++|+++.|+-.-...+.++..++.|+|.+++ |.
T Consensus        80 i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkVii-SA  118 (168)
T d2g82a1          80 IPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII-TA  118 (168)
T ss_dssp             CCTGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEE-SS
T ss_pred             CcccccCCceeEeccccccchHHhhhhhccccceeee-cc
Confidence            7732 46999999999988888899999999999664 54

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.86  E-value=0.051  Score=48.72  Aligned_cols=92  Identities=10%  Similarity=0.034  Sum_probs=58.6

Q ss_pred             CcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC--cee-------cCcccccCHHHhhccCCCcEEEEecCh
Q 019500           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG--TEH-------LGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        39 ~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g--~~i-------~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      ..++++|+|.|+||-+|+.+++.|++.|++++..-+.+...  ...       ..+.-...+.++.+  ++|.++-+...
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vih~a~~   89 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTE--GVDHVFNLAAD   89 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHT--TCSEEEECCCC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhh--cCCeEeecccc
Confidence            45788999999999999999999999999977432322210  111       11222223333333  58988765411


Q ss_pred             hh-------------------HHHHHHHHHHcCCcEEEEecC
Q 019500          110 PF-------------------AAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       110 ~~-------------------v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      ..                   ...+++.|.+.|++.+|..++
T Consensus        90 ~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS  131 (363)
T d2c5aa1          90 MGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASS  131 (363)
T ss_dssp             CCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             cccccccccccccccccccchhhHHHHhHHhhCccccccccc
Confidence            11                   244677888999998776564

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.84  E-value=0.066  Score=41.53  Aligned_cols=85  Identities=18%  Similarity=0.138  Sum_probs=52.3

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC--CC--ceecCcccc------c-CHHHhhccCCCcEEEEecChhh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK--GG--TEHLGLPVF------N-TVAEAKAETKANASAIYVPPPF  111 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~--~g--~~i~G~p~y------~-sl~dip~~~~vDlavi~vp~~~  111 (340)
                      ++|+|+|+ |++|+.+++.|.+.|++++ .|+.+.  ..  .+-.|.+++      + .+.++.- .+.|.++.+++.+.
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~~v~-vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i-~~a~~vv~~t~~d~   77 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGHDIV-LIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGI-EDADMYIAVTGKEE   77 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTT-TTCSEEEECCSCHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCcc-eecCChhhhhhhhhhhhhhhccCcccchhhhhhcCh-hhhhhhcccCCcHH
Confidence            47889999 9999999999999999866 565432  00  011244332      2 2444432 25899999888875


Q ss_pred             HHHH-HHHHHHcCCcEEEEe
Q 019500          112 AAAA-ILEAMEAELDLVVCI  130 (340)
Q Consensus       112 v~~~-v~ea~~~Gvk~vvi~  130 (340)
                      .--. ...+-+.|.+.+|..
T Consensus        78 ~N~~~~~~~k~~~~~~iI~~   97 (132)
T d1lssa_          78 VNLMSSLLAKSYGINKTIAR   97 (132)
T ss_dssp             HHHHHHHHHHHTTCCCEEEE
T ss_pred             HHHHHHHHHHHcCCceEEEE
Confidence            4322 223335677765533

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=94.78  E-value=0.026  Score=50.46  Aligned_cols=90  Identities=12%  Similarity=0.068  Sum_probs=58.4

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce---------------e-cCcccccCHHHhhccCCCcEEEEe
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---------------H-LGLPVFNTVAEAKAETKANASAIY  106 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~---------------i-~G~p~y~sl~dip~~~~vDlavi~  106 (340)
                      +||+|.|++|-.|+.+++.|++.|++++...+.......               + ..+.-+.++.++....++|.++=+
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViHl   80 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF   80 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEEC
Confidence            478999999999999999999999997744443221111               0 122233456666554569998853


Q ss_pred             c-----C-----hhh--------HHHHHHHHHHcCCcEEEEecC
Q 019500          107 V-----P-----PPF--------AAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       107 v-----p-----~~~--------v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      -     +     +..        +..+++.|.+.+++.+|..++
T Consensus        81 Aa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss  124 (338)
T d1udca_          81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSS  124 (338)
T ss_dssp             CSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             CCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCc
Confidence            2     1     111        234778888899998776664

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=94.70  E-value=0.0011  Score=53.37  Aligned_cols=83  Identities=12%  Similarity=0.062  Sum_probs=48.1

Q ss_pred             EeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-c---eecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHHc
Q 019500           47 CQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEA  122 (340)
Q Consensus        47 VvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~  122 (340)
                      ++|+ |+||+..+++|.+ ++.+....|.+... +   +..+ ..+.++.|+.+  ..|++++++|++.+.+++++....
T Consensus         4 fIG~-G~mg~~l~~~L~~-~~~~~~v~~R~~~~~~~l~~~~~-~~~~~~~~~~~--~~DiVil~v~d~~i~~v~~~l~~~   78 (153)
T d2i76a2           4 FVGT-GTLTRFFLECLKD-RYEIGYILSRSIDRARNLAEVYG-GKAATLEKHPE--LNGVVFVIVPDRYIKTVANHLNLG   78 (153)
T ss_dssp             EESC-CHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTC-CCCCSSCCCCC-----CEEECSCTTTHHHHHTTTCCS
T ss_pred             EEeC-cHHHHHHHHHHHh-CCCEEEEEeCChhhhcchhhccc-ccccchhhhhc--cCcEEEEeccchhhhHHHhhhccc
Confidence            4599 9999999998865 55533345544310 1   1223 34567878776  489999999999998887765433


Q ss_pred             CCcEEEEecCCCC
Q 019500          123 ELDLVVCITEGIP  135 (340)
Q Consensus       123 Gvk~vvi~t~Gf~  135 (340)
                      + +.++-.+++.+
T Consensus        79 ~-~ivi~~s~~~~   90 (153)
T d2i76a2          79 D-AVLVHCSGFLS   90 (153)
T ss_dssp             S-CCEEECCSSSC
T ss_pred             c-eeeeecccchh
Confidence            3 33333444444

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=94.54  E-value=0.034  Score=45.32  Aligned_cols=93  Identities=17%  Similarity=0.244  Sum_probs=62.5

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCc--ccccCHHHhhccCCCcEEEEecChh---
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGL--PVFNTVAEAKAETKANASAIYVPPP---  110 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~---i~G~--p~y~sl~dip~~~~vDlavi~vp~~---  110 (340)
                      .+..+|+|+|+ |.+|+.++++|.+.|++.+..+|+.... .+   -+|.  ..|.++.+...  +.|++|.+|+..   
T Consensus        22 l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~--~~Divi~atss~~~i   98 (159)
T d1gpja2          22 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLA--RSDVVVSATAAPHPV   98 (159)
T ss_dssp             CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHH--TCSEEEECCSSSSCC
T ss_pred             cccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhc--cCCEEEEecCCCCcc
Confidence            35667888899 9999999999999999766689976410 11   1233  34566666665  599999999765   


Q ss_pred             hHHHHHHHHHHcC--CcEEEEecCCCC
Q 019500          111 FAAAAILEAMEAE--LDLVVCITEGIP  135 (340)
Q Consensus       111 ~v~~~v~ea~~~G--vk~vvi~t~Gf~  135 (340)
                      ...+.++...++.  -+..+++=-+.|
T Consensus        99 i~~~~i~~~~~~r~~~~~~~iiDlavP  125 (159)
T d1gpja2          99 IHVDDVREALRKRDRRSPILIIDIANP  125 (159)
T ss_dssp             BCHHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred             ccHhhhHHHHHhcccCCCeEEEeecCC
Confidence            3467787777653  233344444443

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=94.47  E-value=0.046  Score=45.38  Aligned_cols=87  Identities=14%  Similarity=0.022  Sum_probs=62.4

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc----CCeEEEeeCCCCCCce---------------------------ecC--cccc
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY----GTKMVGGVTPKKGGTE---------------------------HLG--LPVF   88 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~----G~~vv~~VnP~~~g~~---------------------------i~G--~p~y   88 (340)
                      .++|.|.|. ||.|+.+.|.+.+.    .+++++.-+|..  .+                           +.|  ++++
T Consensus         1 tikigINGf-GRIGR~v~R~~~~~~~~~~~~vvaINd~~~--~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~   77 (173)
T d1obfo1           1 TIRVAINGY-GRIGRNILRAHYEGGKSHDIEIVAINDLGD--PKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVD   77 (173)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTTSCSSEEEEEEECSSC--HHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEE
T ss_pred             CeEEEEECC-cHHHHHHHHHHHhCCCCCCeEEEEEcCCCC--hHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEE
Confidence            368999999 99999999988763    456764333321  11                           223  2333


Q ss_pred             --cCHHHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500           89 --NTVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus        89 --~sl~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                        ++++++|= +..+|+++.|+-.-...+.++.-++.|+|.+++ |.
T Consensus        78 ~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkVii-SA  123 (173)
T d1obfo1          78 ANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVII-SA  123 (173)
T ss_dssp             CCSCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEE-SS
T ss_pred             ecCCHHHCcccccccceEEEecccccCHHHHHHHhccCCcceEE-ec
Confidence              36788873 357999999999888888888999999999764 54

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.32  E-value=0.038  Score=46.34  Aligned_cols=61  Identities=21%  Similarity=0.208  Sum_probs=43.8

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee-------------------------cCcccccCHHHhhcc
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-------------------------LGLPVFNTVAEAKAE   97 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i-------------------------~G~p~y~sl~dip~~   97 (340)
                      ++|.|+|+ |..|...+-.+.+.|++++ ++|.+.  +.+                         ..+.+..++.+... 
T Consensus         1 MkI~ViGl-G~vGl~~a~~la~~g~~V~-g~D~n~--~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~-   75 (202)
T d1mv8a2           1 MRISIFGL-GYVGAVCAGCLSARGHEVI-GVDVSS--TKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL-   75 (202)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTCEEE-EECSCH--HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH-
T ss_pred             CEEEEECC-CHhHHHHHHHHHhCCCcEE-EEeCCH--HHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHh-
Confidence            36778899 9999988889989999966 666543  111                         12345556777655 


Q ss_pred             CCCcEEEEecCh
Q 019500           98 TKANASAIYVPP  109 (340)
Q Consensus        98 ~~vDlavi~vp~  109 (340)
                       +.|++++|+|.
T Consensus        76 -~~d~i~i~VpT   86 (202)
T d1mv8a2          76 -DSDVSFICVGT   86 (202)
T ss_dssp             -TCSEEEECCCC
T ss_pred             -hCCEEEEecCc
Confidence             48999999986

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=94.24  E-value=0.036  Score=48.53  Aligned_cols=84  Identities=18%  Similarity=0.161  Sum_probs=57.0

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEec-----------Ch-hh
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYV-----------PP-PF  111 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~v-----------p~-~~  111 (340)
                      +|+|.|++|-.|+.+++.|++.|+.++...+.+.  -   .+.-...+.++.....+|.++.+.           ++ +.
T Consensus         4 kIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~--~---~~~~~~~~~~~~~~~~~d~v~~~a~~~~~~~~~~~~~~~~   78 (315)
T d1e6ua_           4 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE--L---NLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADF   78 (315)
T ss_dssp             EEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT--C---CTTCHHHHHHHHHHHCCSEEEECCCCCCCHHHHHHCHHHH
T ss_pred             EEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchh--c---cccCHHHHHHHHhhcCCCEEEEcchhccccccchhhHHHH
Confidence            7899999999999999999999998764444332  1   233344566665444689888754           11 11


Q ss_pred             -------HHHHHHHHHHcCCcEEEEecC
Q 019500          112 -------AAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       112 -------v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                             ...+++.|.+.+++.+|..++
T Consensus        79 ~~~Nv~gt~~ll~~a~~~~v~~~i~~SS  106 (315)
T d1e6ua_          79 IYQNMMIESNIIHAAHQNDVNKLLFLGS  106 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence                   234567788889988776665

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=94.09  E-value=0.041  Score=48.14  Aligned_cols=89  Identities=9%  Similarity=0.008  Sum_probs=56.7

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce--------ecCcc-------cccCHHHhhccCCCcEEEEecC
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--------HLGLP-------VFNTVAEAKAETKANASAIYVP  108 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~--------i~G~p-------~y~sl~dip~~~~vDlavi~vp  108 (340)
                      ||+|.|++|-+|+.+++.|++.|+++++..|....+..        ..+++       -..++.++.+..++|.++-+.-
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~aa   81 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAG   81 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeecc
Confidence            68899999999999999999999998754333221110        11222       2234555554346899886542


Q ss_pred             h------------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          109 P------------------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       109 ~------------------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      .                  .....+++.|.+.+++..+++++
T Consensus        82 ~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS  123 (338)
T d1orra_          82 QVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS  123 (338)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             cccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence            1                  11234667888889887676765

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=93.88  E-value=0.051  Score=44.87  Aligned_cols=87  Identities=18%  Similarity=0.163  Sum_probs=62.7

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCce---------------------------ecC--cccc--c
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTE---------------------------HLG--LPVF--N   89 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~---------------------------i~G--~p~y--~   89 (340)
                      .++|.|.|. ||+|+.+.|.+.+. .++++ .+|.... .+                           +.|  ++++  +
T Consensus         1 tikigINGF-GRIGR~v~R~~~~~~~i~iv-aINd~~~-~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~   77 (166)
T d1gado1           1 TIKVGINGF-GRIGRIVFRAAQKRSDIEIV-AINDLLD-ADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAER   77 (166)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSEEEE-EEECSSC-HHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred             CeEEEEECC-cHHHHHHHHHHhhCCCeEEE-EEeCCCC-HHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCC
Confidence            368899998 99999999988776 57777 4443221 11                           233  3344  3


Q ss_pred             CHHHhh-ccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500           90 TVAEAK-AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus        90 sl~dip-~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      +.+++| .+.++|+++.|+-.-...+.++.-++.|+|.++ +|.
T Consensus        78 ~p~~i~W~~~gvDiViEcTG~f~t~~~~~~hl~~gakkVi-iSa  120 (166)
T d1gado1          78 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVV-MTG  120 (166)
T ss_dssp             SGGGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEE-ESS
T ss_pred             ChHHCCccccCCCEEEEccccccCHHHHHHHhcCCCceEE-eec
Confidence            678887 334699999999988888888888999999966 453

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=93.83  E-value=0.042  Score=46.40  Aligned_cols=61  Identities=16%  Similarity=0.269  Sum_probs=45.9

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      +|.|+|. |+.|+.+++.+..+|.+++ ..+|.......... -|.+++++..  ..|++++.+|-
T Consensus        47 tvgIiG~-G~IG~~va~~l~~fg~~v~-~~d~~~~~~~~~~~-~~~~l~~l~~--~~D~v~~~~pl  107 (199)
T d1dxya1          47 TVGVMGT-GHIGQVAIKLFKGFGAKVI-AYDPYPMKGDHPDF-DYVSLEDLFK--QSDVIDLHVPG  107 (199)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCSSCCTTC-EECCHHHHHH--HCSEEEECCCC
T ss_pred             eeeeeec-ccccccccccccccceeee-ccCCccchhhhcch-hHHHHHHHHH--hcccceeeecc
Confidence            4566699 9999999999999999976 67875421122222 3568999987  48999999885

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.64  E-value=0.062  Score=45.27  Aligned_cols=89  Identities=17%  Similarity=0.062  Sum_probs=61.3

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcC-----CeEEEeeCCCCCCc---------ee-------------------------
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYG-----TKMVGGVTPKKGGT---------EH-------------------------   82 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G-----~~vv~~VnP~~~g~---------~i-------------------------   82 (340)
                      +++|.|.|. ||+|+.+.|.+.+.+     +++++..||...-+         ++                         
T Consensus         2 ~ikigINGF-GRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlkyDSvhG~~~~~v~~~~~~~~~~~~~~~i~   80 (190)
T d1k3ta1           2 PIKVGINGF-GRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVV   80 (190)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHHEETTTEECSSCEEEECSSTTCSSCCEEEE
T ss_pred             CeEEEEECC-ChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhhccccccCCCceEEEccCccccccccceEE
Confidence            478999999 999999999887643     46776666753101         11                         


Q ss_pred             cCccc-----ccCHHHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500           83 LGLPV-----FNTVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus        83 ~G~p~-----y~sl~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      .|.+.     .++.+++|- +.++|+++.|+-.-...+.++..++.|+|.+++ |.
T Consensus        81 ~g~~i~~~~~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkVii-SA  135 (190)
T d1k3ta1          81 NGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVI-SA  135 (190)
T ss_dssp             TTEEEEEEECCSCGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE-SS
T ss_pred             cCceEEecccCCChhHCCHhhcCCcEEEEecccccccccchhhcccCcceeee-cc
Confidence            12121     234667662 236899999998888888888888999998664 54

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.58  E-value=0.13  Score=43.46  Aligned_cols=97  Identities=13%  Similarity=0.106  Sum_probs=59.5

Q ss_pred             ccccCcCCeEEEEeCCCCCcchHHHHHHHHcCC--eEEEeeCCCCC---Ccee-------cCcccccCHHHhhccCCCcE
Q 019500           35 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKG---GTEH-------LGLPVFNTVAEAKAETKANA  102 (340)
Q Consensus        35 ~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~--~vv~~VnP~~~---g~~i-------~G~p~y~sl~dip~~~~vDl  102 (340)
                      +.=|.-++.+|+|.|+||-.|+.+++.|++.|+  +++ .++.+..   ....       ..+.-.+++.+...  ++|.
T Consensus         7 ~~~~~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~-~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~--~~d~   83 (232)
T d2bkaa1           7 REDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVT-LIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQ--GHDV   83 (232)
T ss_dssp             HHHHHHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEE-EEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGS--SCSE
T ss_pred             HHHhCCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEE-EEecChhhhcccccceeeeeeeccccccccccccc--cccc
Confidence            333444556789999999999999999998875  455 4432211   0111       11222233433333  5899


Q ss_pred             EEEecCh---------------hhHHHHHHHHHHcCCcEEEEecCCC
Q 019500          103 SAIYVPP---------------PFAAAAILEAMEAELDLVVCITEGI  134 (340)
Q Consensus       103 avi~vp~---------------~~v~~~v~ea~~~Gvk~vvi~t~Gf  134 (340)
                      ++-+...               .....+++.|.+.|++.++.+++..
T Consensus        84 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~  130 (232)
T d2bkaa1          84 GFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKG  130 (232)
T ss_dssp             EEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             ccccccccccccchhhhhhhcccccceeeecccccCccccccCCccc
Confidence            9876521               1334578888999999877666543

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.49  E-value=0.12  Score=44.19  Aligned_cols=89  Identities=18%  Similarity=0.125  Sum_probs=55.0

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce-----------ecCcccc----cC---HHHhhccCCCcE
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-----------HLGLPVF----NT---VAEAKAETKANA  102 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~-----------i~G~p~y----~s---l~dip~~~~vDl  102 (340)
                      +..||+|.|++|..|+.+++.|++.|++++..+.+... ..           -.++.+.    .+   +.+...  ..|.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~-~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~--~~~~   78 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVV-SNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALK--QVDV   78 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCS-SCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHT--TCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcc-cchhHHHHHhhhccCCcEEEEeecccchhhhhhcc--Ccch
Confidence            34568999999999999999999999997755543221 10           0122211    12   333333  5777


Q ss_pred             EEEecChh-------hHHHHHHHHHHcCCcEEEEecC
Q 019500          103 SAIYVPPP-------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       103 avi~vp~~-------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      ++.+.++.       .....++.|.+.+....+++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ss  115 (312)
T d1qyda_          79 VISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSE  115 (312)
T ss_dssp             EEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEECSC
T ss_pred             hhhhhhhcccccchhhhhHHHHHHHHhcCCcEEEEee
Confidence            77766543       4456777888887555454543

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.42  E-value=0.23  Score=40.71  Aligned_cols=87  Identities=20%  Similarity=0.212  Sum_probs=55.0

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCC--eEEEeeCCCCCCceecCcc-cccCHHHhhcc--CCCcEEEEecCh---------
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTEHLGLP-VFNTVAEAKAE--TKANASAIYVPP---------  109 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~--~vv~~VnP~~~g~~i~G~p-~y~sl~dip~~--~~vDlavi~vp~---------  109 (340)
                      +|+|.|+||-.|+.+++.|.+.|+  +++ .+.++.. .+..-+. .+.++.++.+.  ..+|.++.++..         
T Consensus         4 kIlItGatG~iG~~lv~~L~~~~~~~~v~-~~~r~~~-~~~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~   81 (212)
T d2a35a1           4 RVLLAGATGLTGEHLLDRILSEPTLAKVI-APARKAL-AEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGTTIKEAGSEE   81 (212)
T ss_dssp             EEEEECTTSHHHHHHHHHHHHCTTCCEEE-CCBSSCC-CCCTTEECCBSCHHHHGGGCCSCCSEEEECCCCCHHHHSSHH
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCeEEEE-EEeCCch-hhcccccccccchhhhhhccccchheeeeeeeeecccccccc
Confidence            577789999999999999999886  444 4443321 1111111 22345554432  247999887522         


Q ss_pred             -------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          110 -------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       110 -------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                             ......++.|.+.+++.++.+++
T Consensus        82 ~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss  111 (212)
T d2a35a1          82 AFRAVDFDLPLAVGKRALEMGARHYLVVSA  111 (212)
T ss_dssp             HHHHHHTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             ccccchhhhhhhcccccccccccccccccc
Confidence                   12345778888889998776665

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=93.34  E-value=0.044  Score=46.13  Aligned_cols=62  Identities=16%  Similarity=0.204  Sum_probs=48.2

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc--eecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~--~i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      .|.|+|. |+.|+.+++.+..+|++++ ..+|.....  ...++.-+.+++++..  ..|++++.+|-
T Consensus        51 tvgIiG~-G~IG~~va~~l~~fg~~v~-~~d~~~~~~~~~~~~~~~~~~l~~ll~--~sD~i~~~~pl  114 (193)
T d1mx3a1          51 TLGIIGL-GRVGQAVALRAKAFGFNVL-FYDPYLSDGVERALGLQRVSTLQDLLF--HSDCVTLHCGL  114 (193)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTCEEE-EECTTSCTTHHHHHTCEECSSHHHHHH--HCSEEEECCCC
T ss_pred             eEEEecc-ccccccceeeeecccccee-eccCcccccchhhhccccccchhhccc--cCCEEEEeecc
Confidence            4667799 9999999999999999976 567754211  2346666779999987  48999999984

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=93.25  E-value=0.076  Score=43.91  Aligned_cols=87  Identities=15%  Similarity=0.102  Sum_probs=61.9

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCce--------------------------ecC--cccc--cC
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTE--------------------------HLG--LPVF--NT   90 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~--------------------------i~G--~p~y--~s   90 (340)
                      .++|.|.|. ||.|+.+.|.+.+. .+++++.-+|...-+.                          +.|  ++++  .+
T Consensus         1 kikIgINGF-GRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~   79 (169)
T d1u8fo1           1 KVKVGVNGF-GRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERD   79 (169)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS
T ss_pred             CcEEEEECC-cHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCC
Confidence            378999999 99999999987765 6888855555431011                          123  2333  35


Q ss_pred             HHHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 019500           91 VAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (340)
Q Consensus        91 l~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi  129 (340)
                      .+++|= +.++|+++.|+-.....+.++.-++.|++.+++
T Consensus        80 p~~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkVii  119 (169)
T d1u8fo1          80 PSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVII  119 (169)
T ss_dssp             GGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEE
T ss_pred             hhhCCccccCCCEEEEecceeccHHHHHHHHhcCCceEee
Confidence            778773 246999999998888778787778889999664

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=93.14  E-value=0.078  Score=40.86  Aligned_cols=84  Identities=8%  Similarity=0.099  Sum_probs=49.2

Q ss_pred             EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC--------C-ceecCccccc-CHHHhhccCCCcEEEEecChhhHHH
Q 019500           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--------G-TEHLGLPVFN-TVAEAKAETKANASAIYVPPPFAAA  114 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~--------g-~~i~G~p~y~-sl~dip~~~~vDlavi~vp~~~v~~  114 (340)
                      ++|+|+ |++|+.+++.|.+.|++++ .|+++..        + ..+.|-..-+ .+.++.-+ +.|.+++++|.+....
T Consensus         3 ~iIiG~-G~~G~~la~~L~~~g~~vv-vid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~-~a~~vi~~~~~~~~~~   79 (134)
T d2hmva1           3 FAVIGL-GRFGGSIVKELHRMGHEVL-AVDINEEKVNAYASYATHAVIANATEENELLSLGIR-NFEYVIVAIGANIQAS   79 (134)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCCE-EEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGG-GCSEEEECCCSCHHHH
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCeEE-EecCcHHHHHHHHHhCCcceeeecccchhhhccCCc-cccEEEEEcCchHHhH
Confidence            567799 9999999999999999855 4554320        0 0122222222 35554322 5899999998754443


Q ss_pred             HHHH-H-HHcCCcEEEEec
Q 019500          115 AILE-A-MEAELDLVVCIT  131 (340)
Q Consensus       115 ~v~e-a-~~~Gvk~vvi~t  131 (340)
                      .+-. + -..+.+.++.-+
T Consensus        80 ~~~~~~~~~~~~~~iiar~   98 (134)
T d2hmva1          80 TLTTLLLKELDIPNIWVKA   98 (134)
T ss_dssp             HHHHHHHHHTTCSEEEEEC
T ss_pred             HHHHHHHHHcCCCcEEeec
Confidence            3322 2 233566554333

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.01  E-value=0.089  Score=43.69  Aligned_cols=64  Identities=13%  Similarity=0.062  Sum_probs=48.5

Q ss_pred             CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      +..+|.|+|. |+.|+.+++.+..+|.+++ ..+|... .......-+.+++++..  ..|+++++.|-
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l~~fg~~v~-~~d~~~~-~~~~~~~~~~~l~ell~--~sDii~i~~pl  106 (188)
T d1sc6a1          43 RGKKLGIIGY-GHIGTQLGILAESLGMYVY-FYDIENK-LPLGNATQVQHLSDLLN--MSDVVSLHVPE  106 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCC-CCCTTCEECSCHHHHHH--HCSEEEECCCS
T ss_pred             cceEEEEeec-ccchhhhhhhcccccceEe-ecccccc-chhhhhhhhhhHHHHHh--hccceeecccC
Confidence            3446777799 9999999999999999966 5666542 23444555678999987  48999999884

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=93.00  E-value=0.052  Score=45.83  Aligned_cols=65  Identities=18%  Similarity=0.275  Sum_probs=47.4

Q ss_pred             cCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc-eecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           38 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-EHLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        38 f~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~-~i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      +..+.  |.|+|. |++|+.+++.+..+|.+++ ..+|..... +..+. -+.+++++..  ..|++++++|-
T Consensus        41 l~gk~--vgIiG~-G~IG~~va~~l~~fg~~V~-~~d~~~~~~~~~~~~-~~~~l~~~l~--~sDii~~~~pl  106 (197)
T d1j4aa1          41 VRDQV--VGVVGT-GHIGQVFMQIMEGFGAKVI-TYDIFRNPELEKKGY-YVDSLDDLYK--QADVISLHVPD  106 (197)
T ss_dssp             GGGSE--EEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCHHHHHTTC-BCSCHHHHHH--HCSEEEECSCC
T ss_pred             ccCCe--EEEecc-cccchhHHHhHhhhccccc-ccCccccccccccee-eecccccccc--ccccccccCCc
Confidence            44444  566699 9999999999999999976 678765211 22232 2358999887  48999999984

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=92.87  E-value=0.042  Score=45.52  Aligned_cols=85  Identities=15%  Similarity=0.103  Sum_probs=60.4

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce--------------------------ecCc--ccc--cCHHH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--------------------------HLGL--PVF--NTVAE   93 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~--------------------------i~G~--p~y--~sl~d   93 (340)
                      ||.|.|. ||+|+.+.|.+.+.+.++++.-+|...-+.                          +.|.  +++  .+.++
T Consensus         2 kIgINGf-GRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~~   80 (169)
T d1dssg1           2 KIGINGF-GRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPEN   80 (169)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             eEEEECC-cHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChHH
Confidence            6788898 999999999998888888865556442011                          2232  333  35677


Q ss_pred             hh-ccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 019500           94 AK-AETKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (340)
Q Consensus        94 ip-~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi  129 (340)
                      +| .+..+|+++.|+-.....+.++.-++.|+|.+++
T Consensus        81 i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkVii  117 (169)
T d1dssg1          81 IPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVII  117 (169)
T ss_dssp             CCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEE
T ss_pred             CCccccCCCEEEecCceEcCHHHHHHHHhcCCceEee
Confidence            76 2236899999998887777777777889888664

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=92.84  E-value=0.09  Score=43.49  Aligned_cols=88  Identities=15%  Similarity=0.078  Sum_probs=62.0

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCc--------------------------eecC--cccc--cCH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT--------------------------EHLG--LPVF--NTV   91 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~--------------------------~i~G--~p~y--~sl   91 (340)
                      ++|.|-|. ||+|+.+.|.+.+. .+++++.=+|... +                          .+.|  ++++  .++
T Consensus         2 ikIgINGf-GRIGR~v~R~~l~~~~~~ivaINd~~d~-~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p   79 (171)
T d3cmco1           2 VKVGINGF-GRIGRNVFRAALKNPDIEVVAVNDLTDA-NTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDP   79 (171)
T ss_dssp             EEEEEESC-SHHHHHHHHHHTTCTTEEEEEEECSSCH-HHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             eEEEEECC-CHHHHHHHHHHhhCCCcEEEEEcCCCCH-HHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCCH
Confidence            68889998 99999999888765 5777743223210 1                          0234  2333  367


Q ss_pred             HHhh-ccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCC
Q 019500           92 AEAK-AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEG  133 (340)
Q Consensus        92 ~dip-~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~G  133 (340)
                      +++| .+.++|+++.|+-.....+-++.-++.|+|.++ +|.-
T Consensus        80 ~~i~W~~~~vDiViEcTG~f~t~~~~~~hl~~gakkVi-iSap  121 (171)
T d3cmco1          80 ENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVI-ISAP  121 (171)
T ss_dssp             GGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEE-ESSC
T ss_pred             HHccccccCCcEEEEecCccCCHHHHHHHHhCCCceEE-Eecc
Confidence            8887 234699999999998888888888999999966 4543

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.75  E-value=0.095  Score=43.11  Aligned_cols=89  Identities=11%  Similarity=0.085  Sum_probs=63.5

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCce--------------------------ecC--cccc--cCH
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTE--------------------------HLG--LPVF--NTV   91 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~--------------------------i~G--~p~y--~sl   91 (340)
                      +||.|-|. ||.|+.+.|.+.+. .+++++.-+|...-+.                          +.|  ++++  ++.
T Consensus         1 tkigINGf-GRIGR~v~R~~~~~~~~~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p   79 (166)
T d2b4ro1           1 TKLGINGF-GRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDP   79 (166)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSSG
T ss_pred             CeEEEECC-CHHHHHHHHHHhhCCCcEEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCCh
Confidence            47889999 99999999988875 6777744346432111                          122  2333  467


Q ss_pred             HHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCC
Q 019500           92 AEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEG  133 (340)
Q Consensus        92 ~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~G  133 (340)
                      +++|= +..+|+++-|+-.-...+.+...+++|+|.|+ +|.-
T Consensus        80 ~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkVi-iSAP  121 (166)
T d2b4ro1          80 SQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVI-MSAP  121 (166)
T ss_dssp             GGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEE-ESSC
T ss_pred             HHccccccCCCEEEEecccccchhhhhhhhccCCCEEE-Eecc
Confidence            77772 24699999999998888889999999999966 4543

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=92.40  E-value=0.035  Score=47.42  Aligned_cols=60  Identities=13%  Similarity=0.150  Sum_probs=44.0

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEec
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYV  107 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~v  107 (340)
                      ++||+|.|+||-.|+.+++.|.+.|++++ +++.+.  -+   +.=+.+++++.....+|+++-+.
T Consensus         1 ~MKIlItGasGfiG~~l~~~L~~~g~~Vi-~~~r~~--~D---~~d~~~~~~~l~~~~~d~vih~a   60 (281)
T d1vl0a_           1 HMKILITGANGQLGREIQKQLKGKNVEVI-PTDVQD--LD---ITNVLAVNKFFNEKKPNVVINCA   60 (281)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSEEEE-EECTTT--CC---TTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEE-Eeechh--cc---CCCHHHHHHHHHHcCCCEEEeec
Confidence            46899999999999999999999999977 677654  22   22234566665544689888665

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=91.96  E-value=0.13  Score=42.47  Aligned_cols=86  Identities=13%  Similarity=-0.028  Sum_probs=56.0

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHc---CCeEEEeeCCCCCCce----------------------------ecCc--ccc-
Q 019500           43 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGTE----------------------------HLGL--PVF-   88 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~---G~~vv~~VnP~~~g~~----------------------------i~G~--p~y-   88 (340)
                      ++|.|.|. ||+|+.+.|.+.+.   .+++++.-+|..  .+                            +.|.  +++ 
T Consensus         1 ikIgINGf-GRIGR~v~R~~~~~~~~~i~ivaINd~~~--~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~   77 (172)
T d1rm4a1           1 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVINDTGG--VKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVS   77 (172)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEECTTC--HHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEEcCCCC--HHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEec
Confidence            57888998 99999999987764   356774333421  11                            2332  333 


Q ss_pred             -cCHHHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500           89 -NTVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus        89 -~sl~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                       .+.+++|= +.++|+++.|+-.-...+-++.-++.|+|.++ +|.
T Consensus        78 ~~~p~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GakkVi-iSA  122 (172)
T d1rm4a1          78 DRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL-ITA  122 (172)
T ss_dssp             CSCGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSCEE-ESS
T ss_pred             CCChHHCChhhcCCCEEEecCceEccHHHHHHHHhcCCceEE-eec
Confidence             25666662 23588888888877777777777888888755 444

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.93  E-value=0.25  Score=37.13  Aligned_cols=83  Identities=7%  Similarity=-0.079  Sum_probs=53.1

Q ss_pred             ccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceec------Ccccc---cCHHHhhccCCCcEEEEec
Q 019500           37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL------GLPVF---NTVAEAKAETKANASAIYV  107 (340)
Q Consensus        37 lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~------G~p~y---~sl~dip~~~~vDlavi~v  107 (340)
                      +|.-+.-+|+|+|. |+.|..-++.|.+.|.++. .+.|... ++..      ++..-   -+-+++.   ..++++.++
T Consensus         7 ~l~l~~k~vlVvG~-G~va~~ka~~ll~~ga~v~-v~~~~~~-~~~~~~~~~~~i~~~~~~~~~~dl~---~~~lv~~at   80 (113)
T d1pjqa1           7 FCQLRDRDCLIVGG-GDVAERKARLLLEAGARLT-VNALTFI-PQFTVWANEGMLTLVEGPFDETLLD---SCWLAIAAT   80 (113)
T ss_dssp             EECCBTCEEEEECC-SHHHHHHHHHHHHTTBEEE-EEESSCC-HHHHHHHTTTSCEEEESSCCGGGGT---TCSEEEECC
T ss_pred             EEEeCCCEEEEECC-CHHHHHHHHHHHHCCCeEE-EEeccCC-hHHHHHHhcCCceeeccCCCHHHhC---CCcEEeecC
Confidence            34556667888999 9999999999999998855 5666542 2211      11111   1233443   378888887


Q ss_pred             ChhhH-HHHHHHHHHcCCc
Q 019500          108 PPPFA-AAAILEAMEAELD  125 (340)
Q Consensus       108 p~~~v-~~~v~ea~~~Gvk  125 (340)
                      ..+.. ..+.++|-++|+.
T Consensus        81 ~d~~~n~~i~~~a~~~~il   99 (113)
T d1pjqa1          81 DDDTVNQRVSDAAESRRIF   99 (113)
T ss_dssp             SCHHHHHHHHHHHHHTTCE
T ss_pred             CCHHHHHHHHHHHHHcCCE
Confidence            66555 4566777777765

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=91.84  E-value=0.82  Score=35.16  Aligned_cols=98  Identities=20%  Similarity=0.169  Sum_probs=62.0

Q ss_pred             EEEEeCCCCCcchHHHHHH-HHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHHc
Q 019500           44 RVICQGITGKNGTFHTEQA-IEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEA  122 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l-~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~  122 (340)
                      ||++.+... ......+.+ .++++++.+.=++..          ...++.+.   +.|.+++......-.++++.+.+.
T Consensus         2 KIl~~~~~~-~e~~~l~~~~~~~~~~v~~~~~~~~----------~~~~~~~~---~~d~ii~~~~~~~~~~vl~~l~~~   67 (131)
T d1dxya2           2 KIIAYGARV-DEIQYFKQWAKDTGNTLEYHTEFLD----------ENTVEWAK---GFDGINSLQTTPYAAGVFEKMHAY   67 (131)
T ss_dssp             EEEECSCCT-TTHHHHHHHHHHHCCEEEECSSCCC----------TTGGGGGT---TCSEEEECCSSCBCHHHHHHHHHT
T ss_pred             EEEEEecCc-CcHHHHHHHHHHcCeEEEEcCCCCC----------HHHHHHhc---CCCEEEEecCCCCCHHHHhhcccC
Confidence            567777633 333344444 446887653211111          11233333   489888877666777888888888


Q ss_pred             CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCc
Q 019500          123 ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGV  162 (340)
Q Consensus       123 Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi  162 (340)
                      +.|.+...+.|+..-|.+.+     +++||.|.  |+.|.
T Consensus        68 ~Lk~I~~~~vG~d~ID~~~a-----~~~gI~V~--n~P~~  100 (131)
T d1dxya2          68 GIKFLTIRNVGTDNIDMTAM-----KQYGIRLS--NVPAY  100 (131)
T ss_dssp             TCCEEEESSSCCTTBCHHHH-----HHTTCEEE--CCTTS
T ss_pred             CeEEEEEccccccccccccc-----ccceEEEE--eCCCC
Confidence            99998888899976665532     67899998  65553

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=91.69  E-value=0.24  Score=43.91  Aligned_cols=87  Identities=15%  Similarity=0.067  Sum_probs=55.9

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEee-CCCCCC-c---eecCccccc-C-------HHHhhccCCCcEEEEecChh
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGG-T---EHLGLPVFN-T-------VAEAKAETKANASAIYVPPP  110 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~V-nP~~~g-~---~i~G~p~y~-s-------l~dip~~~~vDlavi~vp~~  110 (340)
                      .|+|.|+||..|+.+++.|++.|+++++.+ ||+... .   ...|+.... +       ++++..  .+|.+.+..++.
T Consensus         5 tIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~--~~~~~~~~~~~~   82 (350)
T d1xgka_           5 TIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFE--GAHLAFINTTSQ   82 (350)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHT--TCSEEEECCCST
T ss_pred             EEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhc--CCceEEeecccc
Confidence            366779999999999999999999977554 333210 0   112333221 1       333333  578888766543


Q ss_pred             ------hHHHHHHHHHHcCCcEEEEecC
Q 019500          111 ------FAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       111 ------~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                            ....+++.|.+.|++..+++++
T Consensus        83 ~~~~~~~~~~~~~aa~~agv~~~v~~Ss  110 (350)
T d1xgka_          83 AGDEIAIGKDLADAAKRAGTIQHYIYSS  110 (350)
T ss_dssp             TSCHHHHHHHHHHHHHHHSCCSEEEEEE
T ss_pred             cchhhhhhhHHHHHHHHhCCCceEEEee
Confidence                  3456888888999866666665

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=91.60  E-value=0.15  Score=37.14  Aligned_cols=90  Identities=17%  Similarity=0.190  Sum_probs=49.1

Q ss_pred             CcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHH
Q 019500           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (340)
Q Consensus        39 ~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e  118 (340)
                      +.++  |+|+|+ |+.|..+++.|.+.|.++. ..|.+..   ...      .+++.+  ...+  .+.+.+  .+.+  
T Consensus         4 ~~K~--v~ViGl-G~sG~s~a~~L~~~g~~v~-~~D~~~~---~~~------~~~~~~--~~~~--~~~~~~--~~~~--   62 (93)
T d2jfga1           4 QGKN--VVIIGL-GLTGLSCVDFFLARGVTPR-VMDTRMT---PPG------LDKLPE--AVER--HTGSLN--DEWL--   62 (93)
T ss_dssp             TTCC--EEEECC-SHHHHHHHHHHHHTTCCCE-EEESSSS---CTT------GGGSCT--TSCE--EESBCC--HHHH--
T ss_pred             CCCE--EEEEeE-CHHHHHHHHHHHHCCCEEE-EeeCCcC---chh------HHHHhh--ccce--eecccc--hhhh--
Confidence            4454  556699 9999999999999998854 4444321   000      111111  1222  122111  1112  


Q ss_pred             HHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500          119 AMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (340)
Q Consensus       119 a~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviG  156 (340)
                         .++.. |+.|+|++.+.. .+ +.+ +++|++|+|
T Consensus        63 ---~~~d~-vi~SPGi~~~~~-~~-~~a-~~~gi~iiG   93 (93)
T d2jfga1          63 ---MAADL-IVASPGIALAHP-SL-SAA-ADAGIEIVG   93 (93)
T ss_dssp             ---HHCSE-EEECTTSCTTSH-HH-HHH-HHTTCEEEC
T ss_pred             ---ccCCE-EEECCCCCCCCH-HH-HHH-HHcCCCeEC
Confidence               23455 568999986542 22 233 678899987

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=91.49  E-value=0.17  Score=44.60  Aligned_cols=94  Identities=15%  Similarity=0.090  Sum_probs=56.2

Q ss_pred             cccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--------------ecCcccccCHHHhhccCCC
Q 019500           36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--------------HLGLPVFNTVAEAKAETKA  100 (340)
Q Consensus        36 ~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--------------i~G~p~y~sl~dip~~~~v  100 (340)
                      +||+.|  +|+|.|+||-.|+.+++.|++.|+++. .++..... ..              ...+.-+..+.++.....+
T Consensus         4 ~~~~~K--kILVTG~tGfIGs~lv~~Ll~~g~~V~-~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~   80 (356)
T d1rkxa_           4 SFWQGK--RVFVTGHTGFKGGWLSLWLQTMGATVK-GYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQP   80 (356)
T ss_dssp             HHHTTC--EEEEETTTSHHHHHHHHHHHHTTCEEE-EEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCC
T ss_pred             hhhCCC--EEEEECCCCHHHHHHHHHHHHCCCEEE-EEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchh
Confidence            345554  677889999999999999999999866 54432210 10              0122223345555543457


Q ss_pred             cEEEEecChhh------------------HHHHHHHHHHcCCcEEEEecC
Q 019500          101 NASAIYVPPPF------------------AAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       101 Dlavi~vp~~~------------------v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      |.++.+.....                  ...+++.|.+.+.+.+++.++
T Consensus        81 ~~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s  130 (356)
T d1rkxa_          81 EIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNIT  130 (356)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred             hhhhhhhccccccccccCCccccccccccchhhhhhhhcccccccccccc
Confidence            88887664321                  234566777766555455554

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=91.44  E-value=0.19  Score=41.36  Aligned_cols=87  Identities=15%  Similarity=0.040  Sum_probs=60.1

Q ss_pred             EEEEeCCCCCcchHHHHHHHHc---CCeEEEeeCCCCC-------------C---c---------eecC--cccc--cCH
Q 019500           44 RVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKG-------------G---T---------EHLG--LPVF--NTV   91 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~---G~~vv~~VnP~~~-------------g---~---------~i~G--~p~y--~sl   91 (340)
                      ||.|.|. ||+|+.+.|.+.+.   .+++++.-++...             |   .         .+.|  ++++  ++.
T Consensus         2 kIgINGf-GRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~p   80 (169)
T d1hdgo1           2 RVAINGF-GRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP   80 (169)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred             EEEEECC-ChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCCh
Confidence            5788898 99999999988753   4777743223110             0   0         0233  2333  368


Q ss_pred             HHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500           92 AEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus        92 ~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      +++|= +.++|+++.|+-.-...+.++.-++.|+|.+++ |.
T Consensus        81 ~~i~W~~~gvD~ViEcTG~f~t~~~~~~hl~~GakkVii-SA  121 (169)
T d1hdgo1          81 SKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVII-TA  121 (169)
T ss_dssp             GGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE-SS
T ss_pred             hhCCccccCCCEEEEecceeccccchhhhccCCCceEEE-ec
Confidence            88873 246999999999888888888899999999664 54

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=91.42  E-value=0.26  Score=42.79  Aligned_cols=85  Identities=18%  Similarity=0.184  Sum_probs=59.7

Q ss_pred             EEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh-hhHHHHHHHHHHcCC-cEEEEecCCCChhhHHHHHHHH
Q 019500           69 MVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP-PFAAAAILEAMEAEL-DLVVCITEGIPQHDMVRVKAAL  146 (340)
Q Consensus        69 vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~-~~v~~~v~ea~~~Gv-k~vvi~t~Gf~e~~~~~l~~~a  146 (340)
                      .+.-++|..     .|+.+..|..|..+  +.|++++++|. +.+.+++++..+.-- ..+|+-++-.+.....++.+.+
T Consensus       118 ~~~~~~pEe-----~Gv~v~~d~~Eav~--~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l  190 (242)
T d2b0ja2         118 CIHLVHPED-----VGLKVTSDDREAVE--GADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDL  190 (242)
T ss_dssp             EEESSCGGG-----GTCEEESCHHHHHT--TCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHT
T ss_pred             hhhcCCHHH-----CCCEEECCHHHHHh--cCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHHhc
Confidence            444455543     58899999999887  69999999986 567788888776543 3455444555656666676665


Q ss_pred             hccCCcEEEccCCCC
Q 019500          147 NNQSKTRLVGPNCPG  161 (340)
Q Consensus       147 ar~~girviGPNc~G  161 (340)
                       ++.+++++++..++
T Consensus       191 -~~kgi~vi~~hp~a  204 (242)
T d2b0ja2         191 -GREDLNITSYHPGC  204 (242)
T ss_dssp             -TCTTSEEEECBCSS
T ss_pred             -ccCCCEEECCCccC
Confidence             67899999776433

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=91.19  E-value=0.26  Score=41.44  Aligned_cols=32  Identities=22%  Similarity=0.322  Sum_probs=27.7

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT   74 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn   74 (340)
                      .||+|.|+||..|+.+++.|++.|+++++.+.
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~G~~V~~l~R   35 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVR   35 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEC
Confidence            46888999999999999999999999875553

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=91.17  E-value=0.066  Score=45.76  Aligned_cols=86  Identities=17%  Similarity=0.042  Sum_probs=51.6

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecC--------------
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVP--------------  108 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp--------------  108 (340)
                      ++|+|.|++|-+|+.+.+.|.+.|..+....+.+.   -...+.-...++++.+..+||++|-+.-              
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~v~~~~~~~~---~~~Dl~~~~~~~~~i~~~~~D~Vih~Aa~~~~~~~~~~~~~~   77 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNLIALDVHSKE---FCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELA   77 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEEEEECTTCSS---SCCCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEECCCcc---ccCcCCCHHHHHHHHHHcCCCEEEEecccccccccccCcccc
Confidence            47899999999999999999887764432333221   1122333334556554446899887541              


Q ss_pred             ----hhhHHHHHHHHHHcCCcEEEEec
Q 019500          109 ----PPFAAAAILEAMEAELDLVVCIT  131 (340)
Q Consensus       109 ----~~~v~~~v~ea~~~Gvk~vvi~t  131 (340)
                          ......+++.|.+.+++.+.+-|
T Consensus        78 ~~~n~~~~~~l~~~~~~~~~~~~~~ss  104 (298)
T d1n2sa_          78 QLLNATSVEAIAKAANETGAWVVHYST  104 (298)
T ss_dssp             HHHHTHHHHHHHHHHTTTTCEEEEEEE
T ss_pred             ccccccccccchhhhhccccccccccc
Confidence                12233456666677777655433

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=90.73  E-value=0.17  Score=41.94  Aligned_cols=64  Identities=11%  Similarity=0.080  Sum_probs=48.6

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce---ecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~---i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      ..+|.|+|. |+.|+.+++.+..+|.+++ ..+|......   ..++..+.+++|+..  ..|++++.+|-
T Consensus        44 ~~~vgiiG~-G~IG~~va~~l~~fg~~v~-~~d~~~~~~~~~~~~~~~~~~~l~~~l~--~sD~v~~~~pl  110 (188)
T d2naca1          44 AMHVGTVAA-GRIGLAVLRRLAPFDVHLH-YTDRHRLPESVEKELNLTWHATREDMYP--VCDVVTLNCPL  110 (188)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHGGGTCEEE-EECSSCCCHHHHHHHTCEECSSHHHHGG--GCSEEEECSCC
T ss_pred             ccceeeccc-cccchhhhhhhhccCceEE-EEeeccccccccccccccccCCHHHHHH--hccchhhcccc
Confidence            446777799 9999999999999999866 5665432121   345666789999987  59999999985

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=90.23  E-value=0.27  Score=38.28  Aligned_cols=80  Identities=11%  Similarity=0.026  Sum_probs=55.7

Q ss_pred             EEEEeCCCC-Ccc---------hHHHHHHHHcCCeEEEeeCCCCCCceec-----Ccccc------cCHHHhhccCCCcE
Q 019500           44 RVICQGITG-KNG---------TFHTEQAIEYGTKMVGGVTPKKGGTEHL-----GLPVF------NTVAEAKAETKANA  102 (340)
Q Consensus        44 aViVvGasg-k~G---------~~v~~~l~~~G~~vv~~VnP~~~g~~i~-----G~p~y------~sl~dip~~~~vDl  102 (340)
                      +|+|+|.-. ++|         ...++.|++.||+.+ .||++.  .++.     .-+.|      .++.++.+.++||.
T Consensus         6 kvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~I-liN~NP--eTVstd~d~aD~lYfeplt~e~v~~Ii~~E~p~~   82 (121)
T d1a9xa4           6 KIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETI-MVNCNP--ETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKG   82 (121)
T ss_dssp             EEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEE-EECCCT--TSSTTSTTSSSEEECCCCSHHHHHHHHHHHCCSE
T ss_pred             EEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEE-EEecCh--hhhhcChhhcCceEEccCCHHHHHHHHHHhCCCE
Confidence            678889732 344         345678888999977 788876  3331     11222      35667665557899


Q ss_pred             EEEecChhhHHHHHHHHHHcCCcE
Q 019500          103 SAIYVPPPFAAAAILEAMEAELDL  126 (340)
Q Consensus       103 avi~vp~~~v~~~v~ea~~~Gvk~  126 (340)
                      +++..-......+..++.+.|++.
T Consensus        83 ii~~~GGQtalnla~~L~~~gv~i  106 (121)
T d1a9xa4          83 VIVQYGGQTPLKLARALEAAGVPV  106 (121)
T ss_dssp             EECSSSTHHHHTTHHHHHHTTCCB
T ss_pred             EEeehhhhhHHHHHHHHHHcCCcE
Confidence            888888888888888888888874

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=90.22  E-value=0.16  Score=42.30  Aligned_cols=64  Identities=9%  Similarity=0.149  Sum_probs=47.5

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc---eecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~---~i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      ...|.|+|. |+.|+.+++.+..+|++++ ..+|.....   ...+..-+.+++++..  ..|++++.+|-
T Consensus        47 g~tvgIiG~-G~IG~~va~~l~~fg~~v~-~~d~~~~~~~~~~~~~~~~~~~l~~ll~--~sD~v~l~~pl  113 (191)
T d1gdha1          47 NKTLGIYGF-GSIGQALAKRAQGFDMDID-YFDTHRASSSDEASYQATFHDSLDSLLS--VSQFFSLNAPS  113 (191)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECSSCCCHHHHHHHTCEECSSHHHHHH--HCSEEEECCCC
T ss_pred             ccceEEeec-ccchHHHHHHHHhhccccc-cccccccccchhhcccccccCCHHHHHh--hCCeEEecCCC
Confidence            345667799 9999999999999999966 566654211   1234455678999987  48999999986

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.99  E-value=1.3  Score=35.25  Aligned_cols=88  Identities=17%  Similarity=0.164  Sum_probs=52.4

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCe--EEEee-CCCCC-----C-ceec-CcccccCHHHhhccCCCcEEEEecCh---
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTK--MVGGV-TPKKG-----G-TEHL-GLPVFNTVAEAKAETKANASAIYVPP---  109 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~--vv~~V-nP~~~-----g-~~i~-G~p~y~sl~dip~~~~vDlavi~vp~---  109 (340)
                      -+|+|.|++|.+|+.+++.|++.|++  ++..+ +|...     + +-+. .+.-..++.++.+  ++|.++.+...   
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~d~vi~~a~~~~~   81 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQ--GIDALVILTSAVPK   81 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHT--TCSEEEECCCCCCE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccc--cceeeEEEEeeccc
Confidence            36888999999999999999998865  43222 22110     0 1111 1222223444444  58988876532   


Q ss_pred             ----------------------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500          110 ----------------------------PFAAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       110 ----------------------------~~v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                                                  .....++..+...+.+.....++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  132 (252)
T d2q46a1          82 MKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGS  132 (252)
T ss_dssp             ECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred             cccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccc
Confidence                                        24556677777778877554443

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=89.87  E-value=0.48  Score=41.81  Aligned_cols=92  Identities=18%  Similarity=0.130  Sum_probs=57.1

Q ss_pred             CcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC-CCCC------------Cc---ee-cCcccccCHHHhhccCCCc
Q 019500           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKG------------GT---EH-LGLPVFNTVAEAKAETKAN  101 (340)
Q Consensus        39 ~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn-P~~~------------g~---~i-~G~p~y~sl~dip~~~~vD  101 (340)
                      .|+.-+|+|.|++|-+|+.+++.|++.|+++++.+. +...            .+   .+ ..+.-..++.++..  ++|
T Consensus         8 ~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~~   85 (342)
T d1y1pa1           8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK--GAA   85 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT--TCS
T ss_pred             CCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcc--cch
Confidence            466668899999999999999999999999876552 2110            00   01 12222234444443  577


Q ss_pred             EEEEecCh---------------hhHHHHHHHHHHc-CCcEEEEecC
Q 019500          102 ASAIYVPP---------------PFAAAAILEAMEA-ELDLVVCITE  132 (340)
Q Consensus       102 lavi~vp~---------------~~v~~~v~ea~~~-Gvk~vvi~t~  132 (340)
                      .++-+...               .....+++.|.+. +++.++..++
T Consensus        86 ~v~~~a~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS  132 (342)
T d1y1pa1          86 GVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS  132 (342)
T ss_dssp             EEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred             hhhhhcccccccccccccccchhhhHHHHHHhhhccccccccccccc
Confidence            77644322               1234567777775 6888776665

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.14  E-value=0.41  Score=41.37  Aligned_cols=30  Identities=30%  Similarity=0.583  Sum_probs=26.3

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEee
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGV   73 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~V   73 (340)
                      +|+|.|++|-.|+.+++.|++.||++++..
T Consensus         2 ~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~   31 (321)
T d1rpna_           2 SALVTGITGQDGAYLAKLLLEKGYRVHGLV   31 (321)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEE
Confidence            588999999999999999999999987443

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=89.08  E-value=0.34  Score=44.96  Aligned_cols=96  Identities=14%  Similarity=0.094  Sum_probs=65.1

Q ss_pred             CCcccccCc--CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCC--CCCceecCccccc--CHHHhhccCCCcEEEE
Q 019500           32 PPAPAVFVD--KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK--KGGTEHLGLPVFN--TVAEAKAETKANASAI  105 (340)
Q Consensus        32 ~~l~~lf~p--~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~--~~g~~i~G~p~y~--sl~dip~~~~vDlavi  105 (340)
                      +++.+++..  +.+.|++.|+ |..|+..++.|.+.|+++++.+|-.  ..|+.+.|+|+++  .+.|+... .-+++.+
T Consensus        26 ~~~~~~~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~~~g~pv~s~~~~~~~~~~-~~~~~~v  103 (395)
T d2py6a1          26 ANVREVIARRGNATRLVILGT-KGFGAHLMNVRHERPCEVIAAVDDFRYHSGELYYGLPIISTDRFTELATH-DRDLVAL  103 (395)
T ss_dssp             HHHHHHHHHHGGGCEEEEECS-SSTHHHHHSCSSSCSSEEEEEECTTTTTSCCEETTEEEECHHHHHHHHHT-CTTEEEE
T ss_pred             HHHHHHHHhcCCCceEEEEcC-chhHHHHHHHHHHCCceEEEEecCchhhcCceecceEeecHHHhhhhhhc-cCcEEEE
Confidence            346667532  3568999999 8899999999999999999888853  2457899999997  34455432 4555444


Q ss_pred             ecC-hhhHHHH-HHHHHHcCCcEEEE
Q 019500          106 YVP-PPFAAAA-ILEAMEAELDLVVC  129 (340)
Q Consensus       106 ~vp-~~~v~~~-v~ea~~~Gvk~vvi  129 (340)
                      .++ +...... -..|.+.|++.+..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (395)
T d2py6a1         104 NTCRYDGPKRFFDQICRTHGIPHLNF  129 (395)
T ss_dssp             ECCCSHHHHHHHHHHHHHTTCCEEEH
T ss_pred             EeccccchhhHHHHHHHhcCCcccch
Confidence            443 3333333 35556779988553

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.00  E-value=0.59  Score=41.12  Aligned_cols=88  Identities=14%  Similarity=0.135  Sum_probs=54.3

Q ss_pred             EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--------ecCcccc-------cCHHHhhccCCCcEEEEecC
Q 019500           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--------HLGLPVF-------NTVAEAKAETKANASAIYVP  108 (340)
Q Consensus        45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--------i~G~p~y-------~sl~dip~~~~vDlavi~vp  108 (340)
                      |+|.|++|-+|+.+++.|++.|++++...+..... ..        -.+++.+       .+++++....+||+++-+..
T Consensus         4 ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~VihlAa   83 (347)
T d1z45a2           4 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAG   83 (347)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEECCS
T ss_pred             EEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEEccc
Confidence            66889999999999999999999977443322210 10        0122222       23444444446899886431


Q ss_pred             h----h------h--------HHHHHHHHHHcCCcEEEEecC
Q 019500          109 P----P------F--------AAAAILEAMEAELDLVVCITE  132 (340)
Q Consensus       109 ~----~------~--------v~~~v~ea~~~Gvk~vvi~t~  132 (340)
                      .    .      .        ...+++.|.+.+++.++..++
T Consensus        84 ~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS  125 (347)
T d1z45a2          84 LKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSS  125 (347)
T ss_dssp             CCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             cccccccccCcccccccchhhhHHHHHHHHhcccceEEeecc
Confidence            1    1      1        134567788899988776665

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=88.87  E-value=0.49  Score=41.42  Aligned_cols=86  Identities=15%  Similarity=0.137  Sum_probs=54.4

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcC-CeEEEeeCCCCCC-ce---------ec-CcccccCHHH-hhccCCCcEEEEecCh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGG-TE---------HL-GLPVFNTVAE-AKAETKANASAIYVPP  109 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G-~~vv~~VnP~~~g-~~---------i~-G~p~y~sl~d-ip~~~~vDlavi~vp~  109 (340)
                      ++|+|.|+||-+|+.+++.|++.| ++++ .++..... ..         +. .+.-+.++.+ +..  ++|.++-+.-.
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~-~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~--~~d~Vih~a~~   77 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVY-GLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVK--KCDVVLPLVAI   77 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEE-EEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHH--HCSEEEECBCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEE-EEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHh--CCCcccccccc
Confidence            378999999999999999999888 5655 54332210 11         22 2444445444 333  58998875532


Q ss_pred             h------------------hHHHHHHHHHHcCCcEEEEec
Q 019500          110 P------------------FAAAAILEAMEAELDLVVCIT  131 (340)
Q Consensus       110 ~------------------~v~~~v~ea~~~Gvk~vvi~t  131 (340)
                      .                  ....+++.|.+.+++.+++.|
T Consensus        78 ~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~ss  117 (342)
T d2blla1          78 ATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST  117 (342)
T ss_dssp             CCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECC
T ss_pred             ccccccccCCcccccccccccccccccccccccccccccc
Confidence            1                  144577888888898865433

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=88.42  E-value=0.58  Score=34.43  Aligned_cols=31  Identities=23%  Similarity=0.309  Sum_probs=21.0

Q ss_pred             EEEEeCCCCCcc-hHHHHHHHHcCCeEEEeeCCC
Q 019500           44 RVICQGITGKNG-TFHTEQAIEYGTKMVGGVTPK   76 (340)
Q Consensus        44 aViVvGasgk~G-~~v~~~l~~~G~~vv~~VnP~   76 (340)
                      +|-++|. +..| +.+++.|.+.||++. +-|.+
T Consensus        10 ~ihfiGi-gG~GMs~LA~~L~~~G~~Vs-GSD~~   41 (96)
T d1p3da1          10 QIHFIGI-GGAGMSGIAEILLNEGYQIS-GSDIA   41 (96)
T ss_dssp             EEEEETT-TSTTHHHHHHHHHHHTCEEE-EEESC
T ss_pred             EEEEEEE-CHHHHHHHHHHHHhCCCEEE-EEeCC
Confidence            3445588 5556 456888999999866 65544

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=88.42  E-value=0.26  Score=44.28  Aligned_cols=33  Identities=15%  Similarity=0.207  Sum_probs=28.2

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCC
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP   75 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP   75 (340)
                      ++|+|.|++|-.|+.+++.|++.|++++..++.
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~   33 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            478999999999999999999999986656653

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.18  E-value=0.19  Score=41.50  Aligned_cols=63  Identities=19%  Similarity=0.383  Sum_probs=46.5

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc--eecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~--~i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      ...+.|+|. |+.|+.+++.+..+|.+++ ..+|.....  ...+++ +.+++|+..  ..|++++++|-
T Consensus        44 ~k~vgiiG~-G~IG~~va~~~~~fg~~v~-~~d~~~~~~~~~~~~~~-~~~l~ell~--~sDiv~~~~Pl  108 (184)
T d1ygya1          44 GKTVGVVGL-GRIGQLVAQRIAAFGAYVV-AYDPYVSPARAAQLGIE-LLSLDDLLA--RADFISVHLPK  108 (184)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECTTSCHHHHHHHTCE-ECCHHHHHH--HCSEEEECCCC
T ss_pred             ceeeeeccc-cchhHHHHHHhhhccceEE-eecCCCChhHHhhcCce-eccHHHHHh--hCCEEEEcCCC
Confidence            335667798 9999999999999999876 677765211  123333 568999987  48999999985

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.17  E-value=0.43  Score=42.80  Aligned_cols=30  Identities=20%  Similarity=0.122  Sum_probs=26.7

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEee
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGV   73 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~V   73 (340)
                      .+|+|.|++|-.|+.+++.|++.|++++ .+
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~-~i   31 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVC-IV   31 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEE-EE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEE-EE
Confidence            4789999999999999999999999976 55

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=87.75  E-value=0.64  Score=36.82  Aligned_cols=37  Identities=19%  Similarity=0.119  Sum_probs=27.6

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcCC-eEEEeeCCCC
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKK   77 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G~-~vv~~VnP~~   77 (340)
                      |+..||.|+|+ |+.|..++..|...|. ..+..+|.+.
T Consensus         3 ~~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           3 PNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             TTBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            56678889998 9999998888877764 3344777654

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.46  E-value=0.97  Score=36.36  Aligned_cols=86  Identities=12%  Similarity=0.077  Sum_probs=54.2

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHc--CC--eEEEeeCCCCC-----Cce------------ecCccccc--CHHHhh-
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEY--GT--KMVGGVTPKKG-----GTE------------HLGLPVFN--TVAEAK-   95 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~--G~--~vv~~VnP~~~-----g~~------------i~G~p~y~--sl~dip-   95 (340)
                      .|+++|+++|. |..|+.+++.+.+.  +.  ++++..|-+..     |-.            ....+.+.  .+.+.. 
T Consensus         2 ~k~i~I~l~G~-G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T d1ebfa1           2 TKVVNVAVIGA-GVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLK   80 (168)
T ss_dssp             CSEEEEEEECC-SHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHT
T ss_pred             CCEEEEEEEeC-CHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhcccccccHHHHHHHhc
Confidence            46789999999 99999999988864  33  35544432210     000            01111111  122222 


Q ss_pred             ccCCCcEEEEecChhhHHHHHHHHHHcCCcE
Q 019500           96 AETKANASAIYVPPPFAAAAILEAMEAELDL  126 (340)
Q Consensus        96 ~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~  126 (340)
                      ....+|++++++..+...+...+++++|++.
T Consensus        81 ~~~~~~vivd~t~~~~~~~~~~~aL~~G~hV  111 (168)
T d1ebfa1          81 TSPKPVILVDNTSSAYIAGFYTKFVENGISI  111 (168)
T ss_dssp             TCSSCEEEEECSCCHHHHTTHHHHHHTTCEE
T ss_pred             cCCCceEEEEecCChHHHHHHHHHHHcCCeE
Confidence            2235789999999888888999999999985

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=87.31  E-value=0.49  Score=42.17  Aligned_cols=31  Identities=26%  Similarity=0.474  Sum_probs=26.0

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeC
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT   74 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~Vn   74 (340)
                      .|+|.|++|-.|+.+++.|++.|+++++..+
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r   33 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEKGYEVHGIKR   33 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            3558899999999999999999999875443

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=86.72  E-value=0.63  Score=35.22  Aligned_cols=38  Identities=21%  Similarity=0.270  Sum_probs=30.8

Q ss_pred             cCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500           38 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (340)
Q Consensus        38 f~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~   77 (340)
                      +.|...+|.|+|. |..|+..+....+.|++++ ..+|..
T Consensus         7 ~~~~~~kigIlGg-GQL~rMla~aA~~lG~~v~-v~d~~~   44 (111)
T d1kjqa2           7 LRPAATRVMLLGS-GELGKEVAIECQRLGVEVI-AVDRYA   44 (111)
T ss_dssp             TSTTCCEEEEESC-SHHHHHHHHHHHTTTCEEE-EEESST
T ss_pred             CCCCCCEEEEEeC-CHHHHHHHHHHHHCCCEEE-EEcCCC
Confidence            4577778999998 8899998888888999965 567665

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=86.50  E-value=0.93  Score=35.34  Aligned_cols=79  Identities=13%  Similarity=0.107  Sum_probs=49.4

Q ss_pred             CeEEEEeCCCC-Ccc---------hHHHHHHHHcCCeEEEeeCCCCCCceec-----Ccccc------cCHHHhhccCCC
Q 019500           42 NTRVICQGITG-KNG---------TFHTEQAIEYGTKMVGGVTPKKGGTEHL-----GLPVF------NTVAEAKAETKA  100 (340)
Q Consensus        42 ~iaViVvGasg-k~G---------~~v~~~l~~~G~~vv~~VnP~~~g~~i~-----G~p~y------~sl~dip~~~~v  100 (340)
                      .-+|+|+|.-. +.|         ...++.|++.||+.+ .||++.  .++.     .-+.|      .++.++.+.++|
T Consensus         7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~i-liN~NP--~TVstd~d~aD~lYfePlt~e~v~~Ii~~E~p   83 (127)
T d1a9xa3           7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVI-NVNSNP--ATIMTDPEMADATYIEPIHWEVVRKIIEKERP   83 (127)
T ss_dssp             CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEE-EECSCT--TCGGGCGGGSSEEECSCCCHHHHHHHHHHHCC
T ss_pred             CCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEE-EecCch--HhhhcChhhcceeeeecCCHHHHHHHHHHhCc
Confidence            35688889732 334         345678888999977 788887  4431     11222      246666555567


Q ss_pred             cEEEEecChhhHHHHHHHHHHcC
Q 019500          101 NASAIYVPPPFAAAAILEAMEAE  123 (340)
Q Consensus       101 Dlavi~vp~~~v~~~v~ea~~~G  123 (340)
                      |.++.........+...++.+.|
T Consensus        84 d~il~~~GGQtalnla~~L~~~g  106 (127)
T d1a9xa3          84 DAVLPTMGGQTALNCALELERQG  106 (127)
T ss_dssp             SEEECSSSHHHHHHHHHHHHHTT
T ss_pred             CCeEEEeeeehHhHHHHHHHHcC
Confidence            77777777777666666665543

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.24  E-value=0.55  Score=40.95  Aligned_cols=29  Identities=21%  Similarity=0.290  Sum_probs=26.2

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEe
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGG   72 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~   72 (340)
                      +|+|.|++|-+|+.+++.|++.|+++++.
T Consensus         3 KIlVtG~sGfiG~~lv~~L~~~g~~V~~~   31 (312)
T d2b69a1           3 RILITGGAGFVGSHLTDKLMMDGHEVTVV   31 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEE
Confidence            68899999999999999999999998754

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.07  E-value=1  Score=39.39  Aligned_cols=33  Identities=21%  Similarity=0.238  Sum_probs=27.5

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT   74 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn   74 (340)
                      .-+|+|.|++|-.|+.+++.|.+.|++++...+
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            335778899999999999999999999875544

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=85.97  E-value=1  Score=36.00  Aligned_cols=30  Identities=13%  Similarity=0.166  Sum_probs=21.9

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHc--CCeEEE
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEY--GTKMVG   71 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~--G~~vv~   71 (340)
                      |+++  +|.|+||..|....+.+.++  .|++++
T Consensus         2 pK~I--~IlGsTGSIG~~tL~Vi~~~~d~f~v~~   33 (150)
T d1r0ka2           2 PRTV--TVLGATGSIGHSTLDLIERNLDRYQVIA   33 (150)
T ss_dssp             CEEE--EEETTTSHHHHHHHHHHHHTGGGEEEEE
T ss_pred             CcEE--EEECCCcHHHHHHHHHHHcCCCCcEEEE
Confidence            5555  45599999999988887775  466554

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=85.92  E-value=0.36  Score=39.53  Aligned_cols=91  Identities=12%  Similarity=0.156  Sum_probs=54.5

Q ss_pred             cchHHH-HHHHHcCCeEEEe-eCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh----hhHHHHHHHHHHcCCcEE
Q 019500           54 NGTFHT-EQAIEYGTKMVGG-VTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP----PFAAAAILEAMEAELDLV  127 (340)
Q Consensus        54 ~G~~v~-~~l~~~G~~vv~~-VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~----~~v~~~v~ea~~~Gvk~v  127 (340)
                      .|..+. ..|.+.||++++. .+...  +         .+.+...++++|++.+++-.    +.++++++++-+.|.+.+
T Consensus        52 ~G~~~va~~l~~~G~eVi~lg~~~~~--e---------~iv~aa~~~~advI~iSs~~~~~~~~~~~l~~~L~~~g~~~v  120 (168)
T d7reqa2          52 RGQKVIATAYADLGFDVDVGPLFQTP--E---------ETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDI  120 (168)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCTTBCH--H---------HHHHHHHHHTCSEEEEEECSSCHHHHHHHHHHHHHHTTCTTS
T ss_pred             HHHHHHHHHHHhCCcceecCCCcCcH--H---------HHHHHHHccCCCEEEEecCcccchHHHHHHHHHHHhcCCCCe
Confidence            454444 4566679997742 21111  1         12222222479999998753    556667777778886655


Q ss_pred             EEecCCC-ChhhHHHHHHHHhccCCc-EEEccCCC
Q 019500          128 VCITEGI-PQHDMVRVKAALNNQSKT-RLVGPNCP  160 (340)
Q Consensus       128 vi~t~Gf-~e~~~~~l~~~aar~~gi-rviGPNc~  160 (340)
                      .++-.|. ++++..++.     +.|+ .+.||++.
T Consensus       121 ~VivGG~ip~~d~~~l~-----~~Gv~~iF~pgt~  150 (168)
T d7reqa2         121 LITVGGVIPEQDFDELR-----KDGAVEIYTPGTV  150 (168)
T ss_dssp             EEEEEESCCGGGHHHHH-----HHTEEEEECTTCC
T ss_pred             EEEEeCCCCHHHHHHHH-----hCCCCEEECcCCC
Confidence            5666774 667766554     4566 57888863

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=85.82  E-value=1.3  Score=34.80  Aligned_cols=31  Identities=26%  Similarity=0.325  Sum_probs=24.6

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCC
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK   76 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~   76 (340)
                      .|+|+|+ |.+|...++.++..|.+++ .++++
T Consensus        29 ~vlV~G~-G~vG~~~~~~ak~~Ga~vi-~v~~~   59 (170)
T d1e3ja2          29 TVLVIGA-GPIGLVSVLAAKAYGAFVV-CTARS   59 (170)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEE-EEESC
T ss_pred             EEEEEcc-cccchhhHhhHhhhccccc-ccchH
Confidence            5777896 8899999988888899866 56554

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=85.33  E-value=0.11  Score=42.25  Aligned_cols=68  Identities=13%  Similarity=0.088  Sum_probs=43.9

Q ss_pred             ccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCcccccCHHHhhccCCCcEEEEecCh
Q 019500           37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFNTVAEAKAETKANASAIYVPP  109 (340)
Q Consensus        37 lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~---i~G~p~y~sl~dip~~~~vDlavi~vp~  109 (340)
                      .-.+++.+|+|+|+ |..++.++..|.+.|++.+..+|.+... +.   ..+...   +.+... .+.|++|=+||.
T Consensus        12 ~~~~~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~---~~~~~~-~~~DliINaTpi   83 (167)
T d1npya1          12 YHLNKNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAY---INSLEN-QQADILVNVTSI   83 (167)
T ss_dssp             TTCCTTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEE---ESCCTT-CCCSEEEECSST
T ss_pred             cCCCCCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhh---hhcccc-cchhhheecccc
Confidence            33345567888899 8899999999999998755588876410 11   122222   222222 257999988884

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=84.85  E-value=0.64  Score=38.91  Aligned_cols=105  Identities=15%  Similarity=0.157  Sum_probs=59.3

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc---eecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e  118 (340)
                      ..+|+|+|. |+.|+..++.|.+.|.+++ .++++...-   .-.|.+.. +.+++... ++|+.+-|--...+-+  +.
T Consensus        27 gk~v~IqG~-G~VG~~~A~~L~~~Gakvv-v~d~d~~~~~~~~~~g~~~~-~~~~~~~~-~~DI~iPcA~~~~I~~--~~  100 (201)
T d1c1da1          27 GLTVLVQGL-GAVGGSLASLAAEAGAQLL-VADTDTERVAHAVALGHTAV-ALEDVLST-PCDVFAPCAMGGVITT--EV  100 (201)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTTCEEC-CGGGGGGC-CCSEEEECSCSCCBCH--HH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EecchHHHHHHHHhhccccc-Cccccccc-cceeeecccccccccH--HH
Confidence            456888998 9999999999999999966 555543100   12344433 35666653 6898886543332211  23


Q ss_pred             HHHcCCcEEEEecCC--CChhhHHHHHHHHhccCCcEEEccC
Q 019500          119 AMEAELDLVVCITEG--IPQHDMVRVKAALNNQSKTRLVGPN  158 (340)
Q Consensus       119 a~~~Gvk~vvi~t~G--f~e~~~~~l~~~aar~~girviGPN  158 (340)
                      +-+.+.+.++ -...  +..++..+   .+ ++.|+.++ |.
T Consensus       101 a~~i~ak~i~-e~AN~p~~~~~~~~---~L-~~rgI~~i-PD  136 (201)
T d1c1da1         101 ARTLDCSVVA-GAANNVIADEAASD---IL-HARGILYA-PD  136 (201)
T ss_dssp             HHHCCCSEEC-CSCTTCBCSHHHHH---HH-HHTTCEEC-CH
T ss_pred             Hhhhhhheee-ccCCCCcchhhHHH---Hh-cccceEEE-eh
Confidence            3345677643 2222  22232332   22 46777554 54

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.35  E-value=1.4  Score=38.36  Aligned_cols=31  Identities=23%  Similarity=0.177  Sum_probs=27.0

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeC
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT   74 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~Vn   74 (340)
                      ||+|.|++|-+|+.+++.|++.|++++...|
T Consensus         4 KILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             eEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            6889999999999999999999998775444

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.32  E-value=1  Score=35.64  Aligned_cols=85  Identities=18%  Similarity=0.098  Sum_probs=52.7

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce---ecCcc-c----ccCHHHhhc------cCCCcEEEEecC
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLP-V----FNTVAEAKA------ETKANASAIYVP  108 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~---i~G~p-~----y~sl~dip~------~~~vDlavi~vp  108 (340)
                      -.|+|+|+ |.+|...+..+...|.+.+..++++....+   -.|.. +    ..+..+..+      ...+|+++.+++
T Consensus        28 d~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G  106 (171)
T d1pl8a2          28 HKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTG  106 (171)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSC
T ss_pred             CEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEeccC
Confidence            35788898 999999998888889853335655431011   12321 1    123332221      135899999999


Q ss_pred             hhhHHHHHHHHHHcCCcEEE
Q 019500          109 PPFAAAAILEAMEAELDLVV  128 (340)
Q Consensus       109 ~~~v~~~v~ea~~~Gvk~vv  128 (340)
                      .+...+..-++++.|-+.++
T Consensus       107 ~~~~~~~a~~~~~~gG~iv~  126 (171)
T d1pl8a2         107 AEASIQAGIYATRSGGTLVL  126 (171)
T ss_dssp             CHHHHHHHHHHSCTTCEEEE
T ss_pred             CchhHHHHHHHhcCCCEEEE
Confidence            88877777777777765533

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=84.30  E-value=2.1  Score=35.92  Aligned_cols=39  Identities=21%  Similarity=0.124  Sum_probs=31.1

Q ss_pred             ccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC
Q 019500           35 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT   74 (340)
Q Consensus        35 ~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn   74 (340)
                      +.+|+|..+ ++|.|+++.+|..+++.|.+.|.+.+..+.
T Consensus         3 ~~~~~p~gt-~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~   41 (259)
T d2fr1a1           3 DDEWKPTGT-VLVTGGTGGVGGQIARWLARRGAPHLLLVS   41 (259)
T ss_dssp             SCCCCCCSE-EEEETTTSHHHHHHHHHHHHHTCSEEEEEE
T ss_pred             ccccCCcCE-EEEECCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            457889875 678999999999999999999986332554

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=84.27  E-value=1.3  Score=38.79  Aligned_cols=27  Identities=15%  Similarity=0.117  Sum_probs=24.1

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCe
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTK   68 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~   68 (340)
                      +.+|+|.|+||-.|+.+++.|++.|++
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~   28 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPD   28 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTT
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCC
Confidence            567999999999999999999998875

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.24  E-value=0.51  Score=38.95  Aligned_cols=65  Identities=14%  Similarity=0.029  Sum_probs=43.0

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce-----e---------------------------cCcccccCH
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-----H---------------------------LGLPVFNTV   91 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~-----i---------------------------~G~p~y~sl   91 (340)
                      +|.|+|+ |.||+.++..+...|++++ .+++....-+     +                           ..+....++
T Consensus         6 kvaViGa-G~mG~~iA~~~a~~G~~V~-l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~   83 (192)
T d1f0ya2           6 HVTVIGG-GLMGAGIAQVAAATGHTVV-LVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA   83 (192)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred             EEEEECc-CHHHHHHHHHHHhCCCcEE-EEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchh
Confidence            4566699 9999999999999999955 5554431000     0                           123345566


Q ss_pred             HHhhccCCCcEEEEecChhhH
Q 019500           92 AEAKAETKANASAIYVPPPFA  112 (340)
Q Consensus        92 ~dip~~~~vDlavi~vp~~~v  112 (340)
                      .+...  +.|+++=++|-+.-
T Consensus        84 ~~a~~--~ad~ViEav~E~l~  102 (192)
T d1f0ya2          84 ASVVH--STDLVVEAIVENLK  102 (192)
T ss_dssp             HHHTT--SCSEEEECCCSCHH
T ss_pred             Hhhhc--ccceehhhcccchh
Confidence            66554  58999999987543

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.85  E-value=1  Score=39.10  Aligned_cols=30  Identities=37%  Similarity=0.620  Sum_probs=25.5

Q ss_pred             EE-EEeCCCCCcchHHHHHHHHcCCeEEEee
Q 019500           44 RV-ICQGITGKNGTFHTEQAIEYGTKMVGGV   73 (340)
Q Consensus        44 aV-iVvGasgk~G~~v~~~l~~~G~~vv~~V   73 (340)
                      +| +|.|++|-.|+.+++.|++.||++++..
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~   32 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLEKGYEVHGIV   32 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCcCEEEEEE
Confidence            45 5789999999999999999999987543

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.61  E-value=2.6  Score=33.00  Aligned_cols=33  Identities=12%  Similarity=-0.047  Sum_probs=24.3

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCC-eEEEeeCCC
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPK   76 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~-~vv~~VnP~   76 (340)
                      ||.|+||+|+.|+.++-.+...+. +.+..+|.+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            678889999999998887777775 333356644

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=83.42  E-value=0.21  Score=40.58  Aligned_cols=33  Identities=27%  Similarity=0.335  Sum_probs=25.0

Q ss_pred             EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (340)
Q Consensus        44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~   77 (340)
                      .|+|+|+ |-+|...++.++..|.+.+..++++.
T Consensus        30 ~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          30 SVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             CEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             EEEEEcC-Ccchhhhhhhhhcccccccccccchh
Confidence            4667798 88899888888888985444777654

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=83.38  E-value=1.7  Score=37.66  Aligned_cols=111  Identities=13%  Similarity=0.083  Sum_probs=62.9

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEe-------eCCCCCCceecCc---------ccccCHH-----------
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-------VTPKKGGTEHLGL---------PVFNTVA-----------   92 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~-------VnP~~~g~~i~G~---------p~y~sl~-----------   92 (340)
                      .+..+|+|+|. |+.|+..++.|.+.|.++++.       .||+..  .+..+         .-..++.           
T Consensus        34 l~g~~v~IQGf-GnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gl--d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (255)
T d1bgva1          34 LVGKTVALAGF-GNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGI--TTEEKINYMLEMRASGRNKVQDYADKFGVQFF  110 (255)
T ss_dssp             STTCEEEECCS-SHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCS--CSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecCCceEecCCCC--CHHHHHHHHHHHhhhcCcchhhhhhhcCceee
Confidence            44568999998 999999999999999998854       455431  11100         0011111           


Q ss_pred             ---HhhccCCCcEEEEecC-hhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccC
Q 019500           93 ---EAKAETKANASAIYVP-PPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN  158 (340)
Q Consensus        93 ---dip~~~~vDlavi~vp-~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPN  158 (340)
                         ++-. .++|+.+-|-- .....+.++...+.|+|.|+=.+-+-...+..+.  .. ++.||.++ |.
T Consensus       111 ~~~~~~~-~~~DiliPcA~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~ea~~~--ll-~~~gI~vv-PD  175 (255)
T d1bgva1         111 PGEKPWG-QKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRF--LM-QQPNMVVA-PS  175 (255)
T ss_dssp             ETCCGGG-SCCSEEECCSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHHHH--HH-HCTTCEEE-CH
T ss_pred             chhhccc-ccccEEeeccccccccHHHHHhhhhcCceEEecCCCCCcchHHHHH--HH-HhcCCEEe-hH
Confidence               1111 25788765432 2334677888888899985522222211222221  12 46777766 54

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=83.23  E-value=1.5  Score=31.80  Aligned_cols=78  Identities=15%  Similarity=0.224  Sum_probs=43.7

Q ss_pred             eEEEEeCCCCCcc-hHHHHHHHHcCCeEEEeeCCCCCCc-----eecCccccc--CHHHhhccCCCcEEEEecChhhHHH
Q 019500           43 TRVICQGITGKNG-TFHTEQAIEYGTKMVGGVTPKKGGT-----EHLGLPVFN--TVAEAKAETKANASAIYVPPPFAAA  114 (340)
Q Consensus        43 iaViVvGasgk~G-~~v~~~l~~~G~~vv~~VnP~~~g~-----~i~G~p~y~--sl~dip~~~~vDlavi~vp~~~v~~  114 (340)
                      ++|=.+|. +..| +.+++.|.+.|+.+. +-|-+.. +     +-.|+++|.  +-+.+.   ++|++|....-..--.
T Consensus         2 ~~ihfiGI-gG~GMs~LA~~L~~~G~~Vs-GSD~~~~-~~t~~L~~~Gi~i~~gh~~~~i~---~~d~vV~SsAI~~~np   75 (89)
T d1j6ua1           2 MKIHFVGI-GGIGMSAVALHEFSNGNDVY-GSNIEET-ERTAYLRKLGIPIFVPHSADNWY---DPDLVIKTPAVRDDNP   75 (89)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTTCEEE-EECSSCC-HHHHHHHHTTCCEESSCCTTSCC---CCSEEEECTTCCTTCH
T ss_pred             cEEEEEeE-CHHHHHHHHHHHHhCCCeEE-EEeCCCC-hhHHHHHHCCCeEEeeecccccC---CCCEEEEecCcCCCCH
Confidence            45556698 4455 346788888999865 6554431 1     236788764  233332   3677665432111122


Q ss_pred             HHHHHHHcCCcE
Q 019500          115 AILEAMEAELDL  126 (340)
Q Consensus       115 ~v~ea~~~Gvk~  126 (340)
                      .+.+|.++|++.
T Consensus        76 el~~A~~~gIpv   87 (89)
T d1j6ua1          76 EIVRARMERVPI   87 (89)
T ss_dssp             HHHHHHHTTCCE
T ss_pred             HHHHHHHcCCCc
Confidence            366777777764

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=83.21  E-value=2.6  Score=33.24  Aligned_cols=38  Identities=18%  Similarity=-0.018  Sum_probs=26.0

Q ss_pred             CcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (340)
Q Consensus        39 ~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~   77 (340)
                      ..|..||.|+|+ |+.|...+-.+...++.-+..+|.+.
T Consensus         4 ~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           4 VQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             ccCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEecc
Confidence            345678888898 99998777666666764233666554

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=83.21  E-value=0.67  Score=40.28  Aligned_cols=26  Identities=19%  Similarity=0.239  Sum_probs=23.0

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCe
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTK   68 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~   68 (340)
                      ++|+|.|++|-.|+.+++.|.+.|++
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~   26 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYP   26 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCC
Confidence            47899999999999999999998764

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=81.22  E-value=2.5  Score=33.14  Aligned_cols=83  Identities=17%  Similarity=0.105  Sum_probs=45.3

Q ss_pred             eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce---ecCcc-c--c----cCHHHhh---ccCCCcEEEEecCh
Q 019500           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLP-V--F----NTVAEAK---AETKANASAIYVPP  109 (340)
Q Consensus        43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~---i~G~p-~--y----~sl~dip---~~~~vDlavi~vp~  109 (340)
                      -.|+|.|+ |-.|...++.++..|.+.+..++++....+   -.|.. +  |    ..+.+..   ....+|+++.++..
T Consensus        30 ~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~G~  108 (176)
T d2fzwa2          30 SVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGN  108 (176)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCC
T ss_pred             CEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecCCC
Confidence            35788899 568888888888889875556665431011   12211 1  1    1122211   11246666666666


Q ss_pred             hhHHHHHHHHHHcCCcE
Q 019500          110 PFAAAAILEAMEAELDL  126 (340)
Q Consensus       110 ~~v~~~v~ea~~~Gvk~  126 (340)
                      ....+...++.+.|-..
T Consensus       109 ~~~~~~~~~~~~~g~~~  125 (176)
T d2fzwa2         109 VKVMRAALEACHKGWGV  125 (176)
T ss_dssp             HHHHHHHHHTBCTTTCE
T ss_pred             HHHHHHHHHhhcCCcee
Confidence            55555555555555444

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=81.01  E-value=3.2  Score=35.21  Aligned_cols=97  Identities=19%  Similarity=0.168  Sum_probs=54.4

Q ss_pred             CCCCCCCcccc---cCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEE
Q 019500           27 FTTAPPPAPAV---FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANAS  103 (340)
Q Consensus        27 ~~~~~~~l~~l---f~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDla  103 (340)
                      |+.+|.++...   |+.  -.++|.|+|+.+|+.+++.|.+.|++++ ..+.+.  ++.    .-...+++.+ ...++.
T Consensus         2 ~~~~~~~~~~~~~sL~g--K~~lITGas~GIG~aia~~la~~Ga~Vv-i~~~~~--~~~----~~~~~~~~~~-~g~~~~   71 (272)
T d1g0oa_           2 YDAIPGPLGPQSASLEG--KVALVTGAGRGIGREMAMELGRRGCKVI-VNYANS--TES----AEEVVAAIKK-NGSDAA   71 (272)
T ss_dssp             TTCCCSCSSGGGGCCTT--CEEEETTTTSHHHHHHHHHHHHTTCEEE-EEESSC--HHH----HHHHHHHHHH-TTCCEE
T ss_pred             CCCCCCCCCCCCcCCCC--CEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEeCCc--hHH----HHHHHHHHHh-hCCcee
Confidence            56665555431   322  3567899999999999999999999966 333332  111    0001222222 123333


Q ss_pred             E---EecChhhHHHHHHHHHHc--CCcEEEEecCCC
Q 019500          104 A---IYVPPPFAAAAILEAMEA--ELDLVVCITEGI  134 (340)
Q Consensus       104 v---i~vp~~~v~~~v~ea~~~--Gvk~vvi~t~Gf  134 (340)
                      .   +...++.+.+.++++.+.  ++..+| ...|.
T Consensus        72 ~~~~D~~~~~~v~~~~~~~~~~~g~idilV-~nag~  106 (272)
T d1g0oa_          72 CVKANVGVVEDIVRMFEEAVKIFGKLDIVC-SNSGV  106 (272)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHSCCCEEE-ECCCC
T ss_pred             eEeCCCCCHHHHHHHHHHHHHHhCCCCccc-ccccc
Confidence            3   234566777777777665  355543 45453

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=80.86  E-value=1.1  Score=37.61  Aligned_cols=104  Identities=11%  Similarity=0.048  Sum_probs=63.1

Q ss_pred             cccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCe--EEEeeCCCCC-------Cce-ecCccc----------------
Q 019500           34 APAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTK--MVGGVTPKKG-------GTE-HLGLPV----------------   87 (340)
Q Consensus        34 l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~--vv~~VnP~~~-------g~~-i~G~p~----------------   87 (340)
                      |.++|.....+|.|+|. |..|..+++.|.+.+.+  -+..+|-...       ... ..|...                
T Consensus         7 ~~~~~~~~~~ki~ViGv-GGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~g~Gag~~p~~g~~a   85 (209)
T d2vapa1           7 LLEYLQQTKAKITVVGC-GGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEA   85 (209)
T ss_dssp             HHHHHHTTCCCEEEEEE-HHHHHHHHHHHHHHTCTTEEEEEEESBHHHHHTSCCSEEEECCTTTTTTBCCTTCHHHHHHH
T ss_pred             HHHHHhccCCcEEEEEe-CChHHHHHHHHHHcCCCceEEEEEeCCHHHHhcCCcchhcccccccccccccccchHHHHHH
Confidence            56667555556666698 77888888888887653  2224554310       001 112111                


Q ss_pred             -cc---CHHHhhccCCCcEEEEec------ChhhHHHHHHHHHHcCCcEEEEecCCCChhhHH
Q 019500           88 -FN---TVAEAKAETKANASAIYV------PPPFAAAAILEAMEAELDLVVCITEGIPQHDMV  140 (340)
Q Consensus        88 -y~---sl~dip~~~~vDlavi~v------p~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~  140 (340)
                       ..   .+.+..+  +.|+++++.      .....+-+.+.|-+.|+..+-+.|--|..|+..
T Consensus        86 a~e~~~~I~~~l~--~~d~vfi~AGlGGGTGsgaapvia~~ake~g~lvv~ivtlPF~~EG~~  146 (209)
T d2vapa1          86 AKESAEEIKAAIQ--DSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGKV  146 (209)
T ss_dssp             HHHTHHHHHHHHT--TCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEEECCGGGCHH
T ss_pred             HHHHHHHHHHhcc--CCCEEEEEEeCCCCccccHHHHHHHHHHHcCCcEEEEEecchhhhhHH
Confidence             12   3333344  589999975      445566667777788998887888888776544

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=80.48  E-value=0.99  Score=38.76  Aligned_cols=32  Identities=22%  Similarity=0.319  Sum_probs=27.8

Q ss_pred             cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEe
Q 019500           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG   72 (340)
Q Consensus        40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~   72 (340)
                      .+..+|+|+|. |+.|+..++.|.+.|.++++.
T Consensus        29 l~g~~v~IqGf-GnVG~~~a~~L~~~Gakvv~v   60 (242)
T d1v9la1          29 IEGKTVAIQGM-GNVGRWTAYWLEKMGAKVIAV   60 (242)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEe
Confidence            35668999999 999999999999999998854

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.46  E-value=0.65  Score=37.07  Aligned_cols=74  Identities=15%  Similarity=0.090  Sum_probs=44.0

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHH
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAME  121 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~  121 (340)
                      .-.|+|.|+++..|...++.++..|.+++..+....   .         .+.+. +..+|.++...-.+...++.+....
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~---~---------~~~l~-~~Ga~~vi~~~~~~~~~~v~~~t~~   92 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA---K---------REMLS-RLGVEYVGDSRSVDFADEILELTDG   92 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHH---H---------HHHHH-TTCCSEEEETTCSTHHHHHHHHTTT
T ss_pred             CCEEEEECCCCCcccccchhhccccccceeeecccc---c---------ccccc-cccccccccCCccCHHHHHHHHhCC
Confidence            346888899899999999999889999775554322   1         11221 1246766655444443333322233


Q ss_pred             cCCcEEE
Q 019500          122 AELDLVV  128 (340)
Q Consensus       122 ~Gvk~vv  128 (340)
                      .|+..++
T Consensus        93 ~g~d~v~   99 (183)
T d1pqwa_          93 YGVDVVL   99 (183)
T ss_dssp             CCEEEEE
T ss_pred             CCEEEEE
Confidence            5666644

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=80.19  E-value=0.37  Score=38.81  Aligned_cols=34  Identities=18%  Similarity=0.140  Sum_probs=26.0

Q ss_pred             CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCC
Q 019500           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK   76 (340)
Q Consensus        42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~   76 (340)
                      .-.|+|+|+ |.+|...++.++..|.+.+..++++
T Consensus        29 g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~   62 (174)
T d1f8fa2          29 ASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIV   62 (174)
T ss_dssp             TCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESC
T ss_pred             CCEEEEeCC-CHHHhhhhhcccccccceeeeeccH
Confidence            445778898 8899998888888898766566554