Citrus Sinensis ID: 019613

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
MANAGGIPGPEQKPEALNPNLDEIEEEEEEDDDVVEEEDDDDLEEDDDAAQPQRKSRVDRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQFFCLLL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccEEEEEEEEEcccccEEEEEEEEEcccccHHHHHHHHHcHHcccccHHHHHHHHHHHHHHcccccccEEEEEEEccccccccccEEEEEEEEEEccccEEEEEEEEEcccccEEEEEEEEEEccEEEEEEEEEEEEEEcEEEEEEEEEEEccccccccccEEEEEEEEEEcccccccEEEEEEEEEEEEccccEEEEEEEEEEEEEccccccccHHHHHHccccEEEEEEEEEEEEccccccccccccEEEEEEEEEEEccccHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccEEEEEEccccccccccEEEEEEEEEcccEEEEEEEEEEcccccccEEEEEEEEcccccccEEEEEEEEEcccccEEEEEEEEccccccccccEEEEEEEEcccccccccHHHccccEEEEEEcccccEEEEEEEEEEcccccccccHHHHHHccccHHHHHEEEEEEccccccccccccEEEEEEEEEccccccccccHEEHHHEEEcc
Coil and Loop (DISEMBL)
managgipgpeqkpealnpnldeieeeeeedddvveeeddddleedddaaqpqrksrvdrpkiENLFRrirngpvplrVHDVIvkgntktkdCLIEAELDAIRNATTMQEIIQAANIINYKlrelecfdsveitldsgppelpgtsNVIIQVVEtktplsgqigtytkgeaksstvegslkykngfgygdlwdaslaygfdrsaevsagvylprfkglvtpmTARVFLQSQDWLKFSSYKEQSLGLSLGLFSIRHHDLVYNLawrtltdpshmssntvRRQLGHDFLSSLKYTfkfdkrnsplrptrgyafvsttqigglapdsRCLRFLRQFFCLLL
Flexible Loop (DISEMBL)
managgipgpeqkpealnpNLDEIEEEEEEDDDVVEeeddddleedddaaqpqrksrvdrpkienlfrrirngpvplrvhdvivkgntktkdcLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLdsgppelpgTSNVIIQVVETktplsgqigtytkgeaksstveGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTfkfdkrnsplrptRGYAFVSttqigglapdsRCLRFLRQFFCLLL
Low Complexity Region (SEG)
MANAGGIPGPEQKPEALNPNldeieeeeeedddvveeeddddleedddAAQPQRKSRVDRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSrclrflrqffclll
Disordered region (IsUnstruct)
****************************************************************NLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSG***LPGTSNVIIQVVETKTPLSGQIGTYT********VEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGLFSIRHHDLVYNLAWRTLTDP******TVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQFFCLL*
Disordered Region (DISOPRED)
******I*****************************EEDDDDLEED**************PKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEI**********GTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQFFCLLL
Disordered Region (DISEMBL)
********GPEQKPEALNPNLDE*********************************RVDRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGTYTK********EGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQFFCLLL
Disordered Region (DISPRO)
***********QKPEALNPNLDEIEEEEEEDDDVVEEEDDDDLEEDDDAAQPQRKSRVDRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQFFCLLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANAGGIPGPEQKPEALNPNxxxxxxxxxxxxxxxxxxxxxDLEEDDDAAQPQRKSRVDRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQFFCLLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	338	2.2.26 [Sep-21-2011]
Q6P806	468	Sorting and assembly mach	yes	no	0.813	0.587	0.279	2e-12
Q6PA35	468	Sorting and assembly mach	N/A	no	0.810	0.585	0.273	5e-12
Q7ZWS5	468	Sorting and assembly mach	N/A	no	0.810	0.585	0.267	8e-11
Q5U3I0	469	Sorting and assembly mach	yes	no	0.659	0.475	0.274	1e-09
Q9Y512	469	Sorting and assembly mach	yes	no	0.692	0.498	0.274	1e-09
Q8BGH2	469	Sorting and assembly mach	yes	no	0.689	0.496	0.269	3e-09
Q6AXV4	469	Sorting and assembly mach	yes	no	0.692	0.498	0.258	1e-08
Q803G5	469	Sorting and assembly mach	no	no	0.692	0.498	0.25	2e-07
Q10478	475	SAM50-like protein SPAC17	yes	no	0.721	0.513	0.233	9e-07
Q2HJ55	469	Sorting and assembly mach	yes	no	0.739	0.533	0.264	3e-05

>sp|Q6P806|SAM50_XENTR Sorting and assembly machinery component 50 homolog OS=Xenopus tropicalis GN=samm50 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 136/308 (44%), Gaps = 33/308 (10%)

Query: 38  EDDDDLEEDDDAAQPQRKSRVDRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEA 97
            DD DL E     +PQ+K  +    +EN         V  RVH    +G  +TKD LI  
Sbjct: 22  HDDADLVE----VEPQKKQEI----LEN------KDVVVQRVH---FEGLGRTKDDLIAH 64

Query: 98  ELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS--GPPELPGTSNVIIQVVET 155
           E+  +  A  + E+++ ++    KL  L  F +VE+ +D+  G   LP   +V  +V E 
Sbjct: 65  EIGQVFKAKNLIEVMRKSHEAREKLLRLGVFRNVEVLIDTCEGEDALPNGLDVTFEVTEL 124

Query: 156 KTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGV--YLP 213
           +  L+G   T   G  + S V G LK  N FG  +      +YG   + E S G+  + P
Sbjct: 125 RR-LTGSYNTMV-GNNEGSMVLG-LKLPNLFGRAEKMTFQFSYG---TKETSYGLSFFKP 178

Query: 214 RFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL-FSI--RHHDLVYNLAWRTLTDP 270
           +        +  ++ +      +SS +E   G+S  + F I    H L +   WR L   
Sbjct: 179 QVGNFERNFSVNLY-KVTGQFPWSSLRETDRGVSAEINFPIWKTSHTLKWEGVWRELGCL 237

Query: 271 SHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFL 330
           +  +S  +R + GH   SSL +T   D RN+ + P RG       ++ G       + FL
Sbjct: 238 ARTASFAIREESGHTLKSSLSHTMVIDSRNTSILPKRGALLKINQELAGYTGGD--VSFL 295

Query: 331 RQFFCLLL 338
           ++ F L L
Sbjct: 296 KEDFELQL 303

May be required for the assembly pathway of mitochondrial outer membrane proteins.
Xenopus tropicalis (taxid: 8364)

>sp|Q6PA35|SAM5B_XENLA Sorting and assembly machinery component 50 homolog B OS=Xenopus laevis GN=samm50-b PE=2 SV=1

 Score = 72.4 bits (176), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 137/307 (44%), Gaps = 33/307 (10%)

Query: 39  DDDDLEEDDDAAQPQRKSRVDRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAE 98
           DD DL E     +P++K  +    +EN         V  RVH    +G  +TKD LI  E
Sbjct: 23  DDADLVE----VEPEKKQEI----LEN------KDVVVQRVH---FEGLGRTKDDLIAHE 65

Query: 99  LDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS--GPPELPGTSNVIIQVVETK 156
           +  +  A  + E+++ ++    KL  L  F +VE+ +D+  G   +P   +V  +V E +
Sbjct: 66  IGQVFKAKNLIEVMRKSHEAREKLLRLGVFRNVEVLIDTSEGEDAVPNGLDVTFEVTELR 125

Query: 157 TPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGV--YLPR 214
             L+G   T   G  + S V G LK+ N FG  +      +YG   + E S G+  + P+
Sbjct: 126 R-LTGSYNTMV-GNNEGSMVLG-LKFPNLFGRAEKMTFQFSYG---TKETSYGLSFFKPQ 179

Query: 215 FKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL-FSI--RHHDLVYNLAWRTLTDPS 271
                   +  ++ +      +SS +E   G+S  + F I    H L +   WR L   +
Sbjct: 180 VGNFERNFSVNLY-KVTGQFPWSSLRETDRGVSAEINFPIWKTSHTLKWEGVWRELGCLA 238

Query: 272 HMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLR 331
             +S  +R + GH   SSL +T   D RN+ + P RG       ++ G       + FL+
Sbjct: 239 RTASFAIREESGHTLKSSLSHTMVIDSRNASILPKRGALLKINQELAGYTGGD--VSFLK 296

Query: 332 QFFCLLL 338
           + F L L
Sbjct: 297 EDFELQL 303

May be required for the assembly pathway of mitochondrial outer membrane proteins.

Xenopus laevis (taxid: 8355)

>sp|Q7ZWS5|SAM5A_XENLA Sorting and assembly machinery component 50 homolog A OS=Xenopus laevis GN=samm50-a PE=2 SV=1

 Score = 68.2 bits (165), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 136/307 (44%), Gaps = 33/307 (10%)

Query: 39  DDDDLEEDDDAAQPQRKSRVDRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAE 98
           DD DL E     +PQ+K  +    +EN         V  RVH    +G  +TKD L+  E
Sbjct: 23  DDADLVE----VEPQKKQEI----LEN------KDVVVQRVH---FEGLGRTKDDLVAHE 65

Query: 99  LDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS--GPPELPGTSNVIIQVVETK 156
           +  +  A  + E+++ ++    KL  L  F +VE+ +D+  G   +P   +V  +V E +
Sbjct: 66  IGQVFKAKNLIEVMRKSHEAREKLLRLGVFRNVEVLIDTCEGEDAVPNGLDVTFEVTELR 125

Query: 157 TPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGV--YLPR 214
             ++G   T   G  + S V G LK  N FG  +      +YG   + E S G+  + P+
Sbjct: 126 R-VTGSYNTMV-GNNEGSMVLG-LKLPNLFGRAEKMTFQFSYG---TKETSYGLSFFKPQ 179

Query: 215 FKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL-FSI--RHHDLVYNLAWRTLTDPS 271
                   +  ++ +      +SS +E   G+S  + F I    H L +   WR L   +
Sbjct: 180 VGNFERNFSVNLY-KVTGQFPWSSLRETDRGVSAEINFPIWKTSHTLKWEGVWRELGCLA 238

Query: 272 HMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLR 331
             +S T+R + GH   SSL ++   D RN+ + P  G       ++ G       + FL+
Sbjct: 239 RTASFTIREESGHTLKSSLSHSMVIDSRNASILPKSGALLKINQELAGYTGGD--VSFLK 296

Query: 332 QFFCLLL 338
           + F L L
Sbjct: 297 EDFELQL 303

May be required for the assembly pathway of mitochondrial outer membrane proteins.

Xenopus laevis (taxid: 8355)

>sp|Q5U3I0|SAM5B_DANRE Sorting and assembly machinery component 50 homolog B OS=Danio rerio GN=samm50b PE=2 SV=1

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 106/237 (44%), Gaps = 14/237 (5%)

Query: 79  VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLD-- 136
           V  V ++G  +TK+  +  E+  +  A  + E+++ ++    +L  L  F  VE+ +D  
Sbjct: 47  VQHVNIEGLGRTKEDYLGYEISDVFTARNLVEVMRKSHEARQRLLRLGIFRDVEVVIDIS 106

Query: 137 SGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASL 196
            G   LP   +V  +V E K  L+G   T   G  + S V G +K  N  G G+      
Sbjct: 107 EGADALPNGLDVTFEVTELKR-LTGSYNTMV-GNNEGSMVLG-IKLPNMLGRGEKLTFQF 163

Query: 197 AYGFDRSAEVSAGV--YLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL---F 251
           +YG   + E S G+  + P+        T  ++ +      +SS KE   G+S  L    
Sbjct: 164 SYG---TKETSYGLSFFKPQSGYFERNFTVNLY-KVTGQFPWSSLKETDRGVSTELSLPL 219

Query: 252 SIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRG 308
            +  H L +   WR L   +  +S  VR + GH   S+L +T   D RNS + P +G
Sbjct: 220 WMTDHTLKWEGVWRELGCLARSASFAVREESGHTLKSALSHTMVVDTRNSAILPRKG 276

May be required for the assembly pathway of mitochondrial outer membrane proteins.

Danio rerio (taxid: 7955)

>sp|Q9Y512|SAM50_HUMAN Sorting and assembly machinery component 50 homolog OS=Homo sapiens GN=SAMM50 PE=1 SV=3

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 108/248 (43%), Gaps = 14/248 (5%)

Query: 79  VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS- 137
           V  V   G  +TKD +I  E+  +  A  + E+++ ++    KL  L  F  V++ +D+ 
Sbjct: 47  VQHVHFDGLGRTKDDIIICEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTC 106

Query: 138 -GPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASL 196
            G   LP   +V  +V E +  L+G   T   G  + S V G LK  N  G  +      
Sbjct: 107 QGDDALPNGLDVTFEVTELRR-LTGSYNTMV-GNNEGSMVLG-LKLPNLLGRAEKVTFQF 163

Query: 197 AYGFDRSAEVSAGV--YLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL-FSI 253
           +YG   + E S G+  + PR        +  ++ +      +SS +E   G+S    F I
Sbjct: 164 SYG---TKETSYGLSFFKPRPGNFERNFSVNLY-KVTGQFPWSSLRETDRGMSAEYSFPI 219

Query: 254 --RHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAF 311
               H + +   WR L   S  +S  VR++ GH   SSL +    D RNS + P RG   
Sbjct: 220 WKTSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALL 279

Query: 312 VSTTQIGG 319
               ++ G
Sbjct: 280 KVNQELAG 287

May be required for the assembly pathway of mitochondrial outer membrane proteins.

Homo sapiens (taxid: 9606)

>sp|Q8BGH2|SAM50_MOUSE Sorting and assembly machinery component 50 homolog OS=Mus musculus GN=Samm50 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 109/249 (43%), Gaps = 16/249 (6%)

Query: 79  VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS- 137
           V  V   G  +TKD +I  E+  +  A  + E+++ ++    KL  L  F  V++ +D+ 
Sbjct: 47  VQHVHFDGLGRTKDDIIICEIGEVFKAKNLIEVMRRSHEAREKLLRLGIFRQVDVLIDTC 106

Query: 138 -GPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASL 196
            G   LP   +V  +V E +  L+G   T   G  + S V G LK  N  G  +      
Sbjct: 107 HGEDALPNGLDVTFEVTELRR-LTGSYNTMV-GNNEGSMVLG-LKLPNLLGRAEKVTFQF 163

Query: 197 AYGFDRSAEVSAGV--YLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGLFSI- 253
           +YG   + E S G+  + P+        +  ++ +      +SS +E   G+S   +S  
Sbjct: 164 SYG---TKETSYGLSFFKPQPGNFERNFSVNLY-KVTGQFPWSSLRETDRGVS-AEYSFP 218

Query: 254 ---RHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYA 310
                H + +   WR L   S  +S  VR++ GH   SSL +    D RNS + P RG  
Sbjct: 219 LWKTSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGAL 278

Query: 311 FVSTTQIGG 319
           F    ++ G
Sbjct: 279 FKVNQELAG 287

May be required for the assembly pathway of mitochondrial outer membrane proteins.

Mus musculus (taxid: 10090)

>sp|Q6AXV4|SAM50_RAT Sorting and assembly machinery component 50 homolog OS=Rattus norvegicus GN=Samm50 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 106/248 (42%), Gaps = 14/248 (5%)

Query: 79  VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS- 137
           V  V   G  +TKD +I  E+  +  A  + E+++ ++    KL  L  F  V++ +D+ 
Sbjct: 47  VQHVHFDGLERTKDDIIICEIGEVFKAKNLIEVMRRSHEAREKLLRLGIFRQVDVLIDTC 106

Query: 138 -GPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASL 196
            G   LP   +V  +V E +  L+G   T   G  + S V G LK  N  G  +      
Sbjct: 107 HGEDALPNGLDVTFEVTELRR-LTGSYNTMV-GNNEGSMVLG-LKLPNLLGRAEKVTFQF 163

Query: 197 AYGFDRSAEVSAGV--YLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL---F 251
           +YG   + E S G+  + P+        +  ++ +      +SS +E   G+S       
Sbjct: 164 SYG---TKETSYGLSFFKPQPGNFEKNFSVNLY-KVTGQFPWSSLRETDRGVSAEYSFPL 219

Query: 252 SIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAF 311
               H + +   WR L   +  +S  VR++ GH   SSL +    D RNS + P RG   
Sbjct: 220 CKTSHTVKWEGVWRELGCLARTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALL 279

Query: 312 VSTTQIGG 319
               ++ G
Sbjct: 280 KVNQELAG 287

May be required for the assembly pathway of mitochondrial outer membrane proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q803G5|SAM5A_DANRE Sorting and assembly machinery component 50 homolog A OS=Danio rerio GN=samm50a PE=2 SV=1

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 110/248 (44%), Gaps = 14/248 (5%)

Query: 79  VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS- 137
           V  V + G  +TK+ ++  E+  + +A  + ++++ ++    KL  L  F  VE+ +D+ 
Sbjct: 47  VQHVHIDGLGRTKEDILTYEIADVFHAKNLIDVMKKSHEARQKLLRLGIFRHVEVVIDTA 106

Query: 138 -GPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASL 196
            G   LP   +V  +V E +  ++G   T   G  + S V G +K  N  G  +      
Sbjct: 107 EGADALPNGLDVTFEVRELRR-MTGSYNTMV-GNNEGSMVLG-IKLPNVLGRAEKLTFQF 163

Query: 197 AYGFDRSAEVSAGV--YLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL-FSI 253
           +YG   + E S G+  + P+        +  ++ +      +SS +E   G+S  + F I
Sbjct: 164 SYG---TKETSYGLSFFKPQPGHFERNFSLNLY-KVTGQFPWSSLRETDRGVSAEISFPI 219

Query: 254 RH--HDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAF 311
               H L +   WR L   +  +S  VR + GH   SSL +    D RNS + P +G   
Sbjct: 220 WRTSHTLKWEGVWRELGCLARTASFAVREESGHSLKSSLAHAMVIDTRNSTILPRKGALL 279

Query: 312 VSTTQIGG 319
               ++ G
Sbjct: 280 KINQELAG 287

May be required for the assembly pathway of mitochondrial outer membrane proteins.

Danio rerio (taxid: 7955)

>sp|Q10478|SAM50_SCHPO SAM50-like protein SPAC17C9.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17C9.06 PE=3 SV=1

 Score = 54.7 bits (130), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 109/265 (41%), Gaps = 21/265 (7%)

Query: 72  NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNAT------TMQEIIQAANIINYKLREL 125
           N  +P+ +  + V G   T+   I   L    + +      ++ E + A       L   
Sbjct: 39  NSTLPVGISSIRVTGAHHTRPSFIRKVLKTCLDTSKPAKSRSLLETLNAIQETTGNLMAF 98

Query: 126 ECFDSVEITLDSGPPELPGTSN--VIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYK 183
             +++  I +D     + G  +  V IQV E K  L  + GT   G  + + V  ++  +
Sbjct: 99  NVYETANIKIDRASSSVSGDDDLDVTIQVKE-KPRLYVETGTDV-GNVEGN-VHANVLAR 155

Query: 184 NGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQS 243
           N FG  +L   +++YG    + +S     P      T +        +D    SS+   +
Sbjct: 156 NVFGGAELLSGNVSYGTRNRSTMSVNFETPVNADPKTRLRFNGHSNLRDNKSISSHDLLT 215

Query: 244 LGLSLGLFSIRHHDL-------VYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKF 296
            G++L   S++H DL         NL WR +T  +  +S +VR + G     SL YT+  
Sbjct: 216 KGITL---SLQHQDLWSGEHLLSQNLLWRQVTHLTEYASPSVRLEAGDSLKQSLSYTYTR 272

Query: 297 DKRNSPLRPTRGYAFVSTTQIGGLA 321
           D R+  + PT+G     T ++ G  
Sbjct: 273 DTRDHLMIPTKGDYVRQTLELAGFG 297

May be required for the assembly pathway of mitochondrial outer membrane proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q2HJ55|SAM50_BOVIN Sorting and assembly machinery component 50 homolog OS=Bos taurus GN=SAMM50 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 118/268 (44%), Gaps = 18/268 (6%)

Query: 79  VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS- 137
           V  V   G  +TKD +I  E+  +  A  + E+++ ++    KL  L  F  V++ +D+ 
Sbjct: 47  VQHVHFDGLGRTKDDIIMYEIRDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTC 106

Query: 138 -GPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASL 196
            G   LP   +V  +V E +  L+G   T   G  + S V G LK  N  G  +      
Sbjct: 107 QGDDALPNGLDVTFEVTELRR-LTGSYNTMV-GNNEGSMVLG-LKLPNLLGRAEKVTFQF 163

Query: 197 AYGFDRSAEVSAGV--YLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGLFSI- 253
           +YG   + E S G+  + P+        +  ++ +      +SS +E   G+S   +S  
Sbjct: 164 SYG---TKETSYGLSFFKPQPGNFDRNFSVNLY-KVTGQFPWSSLRETDRGVS-AEYSFP 218

Query: 254 ---RHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYA 310
                H + +   WR L   S ++S  VR++ GH   SSL ++   D RNS + P RG  
Sbjct: 219 TWKTSHTVKWEGVWRELGCLSRVASFAVRKESGHSLKSSLSHSMVIDSRNSSILPKRGAL 278

Query: 311 FVSTTQIGGLAPDSRCLRFLRQFFCLLL 338
                ++ G       + FL++ F L L
Sbjct: 279 LKVNQELAGYTGGD--VSFLKEDFELQL 304

May be required for the assembly pathway of mitochondrial outer membrane proteins.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
21553544	524	unknown [Arabidopsis thaliana]	0.952	0.614	0.620	1e-115
18414910	524	outer membrane OMP85 family protein [Ara	0.952	0.614	0.620	1e-115
224101179	519	predicted protein [Populus trichocarpa]	0.905	0.589	0.645	1e-114
224109276	524	predicted protein [Populus trichocarpa]	0.807	0.520	0.717	1e-114
15228433	520	outer membrane OMP85-like protein [Arabi	0.819	0.532	0.685	1e-114
297806563	524	outer membrane OMP85 family protein [Ara	0.961	0.620	0.606	1e-112
225448511	534	PREDICTED: sorting and assembly machiner	0.952	0.602	0.633	1e-112
255574840	518	sorting and assembly machinery (sam50) p	0.828	0.540	0.696	1e-112
147866157	564	hypothetical protein VITISV_041873 [Viti	0.970	0.581	0.625	1e-112
449444624	536	PREDICTED: sorting and assembly machiner	0.819	0.516	0.696	1e-110

>gi|21553544|gb|AAM62637.1| unknown [Arabidopsis thaliana]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/327 (62%), Positives = 271/327 (82%), Gaps = 5/327 (1%)

Query: 10  PEQKPEALNPNLDEIEEEEEEDD--DVVEEEDDDDLEEDDDAAQPQRK--SRVDRPKIEN 65
           P +KP+  NP+  +IE E+E ++  D+  +E++++  E++D  +P+ +  +  DR K E+
Sbjct: 4   PAEKPDP-NPSTPKIESEDEREELGDINGDEEEEEEYEEEDDGKPRTREDAIADRIKAES 62

Query: 66  LFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLREL 125
           LFRR+R  PV +RVHDVIVKGN KTKD +IEAE+D +R ATT+QE+++A+ + N+ L+ L
Sbjct: 63  LFRRMRATPVAVRVHDVIVKGNEKTKDHVIEAEVDVVRQATTLQELLKASKVANFNLQAL 122

Query: 126 ECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNG 185
           + FDSV+ITLDSGPPELPGT+NV+I VVE+K+P++GQIGT+TK EA+SS++EGSLKYKN 
Sbjct: 123 DIFDSVKITLDSGPPELPGTTNVVIDVVESKSPITGQIGTFTKAEARSSSLEGSLKYKNI 182

Query: 186 FGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLG 245
           FGYGD+WD SLAYG D SAEV  G+YLPRF+G  TP T+RV+L +QDWLKFSSYKE++LG
Sbjct: 183 FGYGDIWDGSLAYGCDHSAEVGLGMYLPRFRGRPTPFTSRVYLSTQDWLKFSSYKERALG 242

Query: 246 LSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRP 305
           LSLGL + ++H+L YN+AWR L DPS M+S ++RRQLGH+ +S+LKYTFKFD+RNS LRP
Sbjct: 243 LSLGLIASKYHELAYNIAWRNLIDPSQMASRSIRRQLGHNLVSALKYTFKFDQRNSSLRP 302

Query: 306 TRGYAFVSTTQIGGLAPDSRCLRFLRQ 332
           TRGY+F+ST+QIGGLAPDSR LRFLRQ
Sbjct: 303 TRGYSFISTSQIGGLAPDSRTLRFLRQ 329

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414910|ref|NP_568157.1| outer membrane OMP85 family protein [Arabidopsis thaliana] gi|10178129|dbj|BAB11541.1| unnamed protein product [Arabidopsis thaliana] gi|16648863|gb|AAL24283.1| Unknown protein [Arabidopsis thaliana] gi|20259796|gb|AAM13245.1| unknown protein [Arabidopsis thaliana] gi|332003500|gb|AED90883.1| outer membrane OMP85 family protein [Arabidopsis thaliana]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/327 (62%), Positives = 271/327 (82%), Gaps = 5/327 (1%)

Query: 10  PEQKPEALNPNLDEIEEEEEEDD--DVVEEEDDDDLEEDDDAAQPQRK--SRVDRPKIEN 65
           P +KP+  NP+  +IE E+E ++  D+  +E++++  E++D  +P+ +  +  DR K E+
Sbjct: 4   PAEKPDP-NPSKPKIESEDEREELGDINGDEEEEEEYEEEDDGKPRTREDAIADRIKAES 62

Query: 66  LFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLREL 125
           LFRR+R  PV +RVHDVIVKGN KTKD +IEAE+D +R ATT+QE+++A+ + N+ L+ L
Sbjct: 63  LFRRMRATPVAVRVHDVIVKGNEKTKDHVIEAEVDVVRQATTLQELLKASKVANFNLQAL 122

Query: 126 ECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNG 185
           + FDSV+ITLDSGPPELPGT+NV+I VVE+K+P++GQIGT+TK EA+SS++EGSLKYKN 
Sbjct: 123 DIFDSVKITLDSGPPELPGTTNVVIDVVESKSPITGQIGTFTKAEARSSSLEGSLKYKNI 182

Query: 186 FGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLG 245
           FGYGD+WD SLAYG D SAEV  G+YLPRF+G  TP T+RV+L +QDWLKFSSYKE++LG
Sbjct: 183 FGYGDIWDGSLAYGCDHSAEVGLGMYLPRFRGRPTPFTSRVYLSTQDWLKFSSYKERALG 242

Query: 246 LSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRP 305
           LSLGL + ++H+L YN+AWR L DPS M+S ++RRQLGH+ +S+LKYTFKFD+RNS LRP
Sbjct: 243 LSLGLIASKYHELAYNIAWRNLIDPSQMASRSIRRQLGHNLVSALKYTFKFDQRNSSLRP 302

Query: 306 TRGYAFVSTTQIGGLAPDSRCLRFLRQ 332
           TRGY+F+ST+QIGGLAPDSR LRFLRQ
Sbjct: 303 TRGYSFISTSQIGGLAPDSRTLRFLRQ 329

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101179|ref|XP_002312173.1| predicted protein [Populus trichocarpa] gi|118486263|gb|ABK94973.1| unknown [Populus trichocarpa] gi|222851993|gb|EEE89540.1| predicted protein [Populus trichocarpa]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/322 (64%), Positives = 259/322 (80%), Gaps = 16/322 (4%)

Query: 25  EEEEEEDDDVVEEEDDDDLEED--------------DDAAQPQRKSRVDRPKIENLFRRI 70
           E E +  D VV+  +++D EED              +D     +K+++ R + +N FRRI
Sbjct: 3   EPESDISDPVVQNPNNED-EEDLYEQSDDVEDEDEDEDEDLESQKAKL-RNRFQNFFRRI 60

Query: 71  RNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDS 130
           ++  VP+RVHDV++KGNTKTKD LIEAE  ++++A+T +E+  A++ +N++L+ LE FDS
Sbjct: 61  QHESVPIRVHDVVIKGNTKTKDTLIEAETASLKDASTFKELFAASSDVNFRLQALEIFDS 120

Query: 131 VEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGD 190
           V+IT+DSGPPELPGT+NVI+ VVETK+PL G+IG + KGEA SST+EG+LKYKN FGYGD
Sbjct: 121 VKITIDSGPPELPGTANVIVDVVETKSPLLGEIGVFNKGEASSSTLEGTLKYKNIFGYGD 180

Query: 191 LWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL 250
           LWD SLAY  D  AEVSAGV+LPRFKGLV P+TAR+FLQSQD LKFSS+KE+SLGLSLGL
Sbjct: 181 LWDGSLAYDCDHKAEVSAGVFLPRFKGLVNPVTARLFLQSQDCLKFSSFKERSLGLSLGL 240

Query: 251 FSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYA 310
           FS R+HD+VYNLAWRTLTDPS  +S++VR QLGH  LSSLKYTFK D+RNSPLRPTRG+A
Sbjct: 241 FSTRNHDVVYNLAWRTLTDPSRTASSSVRGQLGHGLLSSLKYTFKIDRRNSPLRPTRGFA 300

Query: 311 FVSTTQIGGLAPDSRCLRFLRQ 332
           FVSTTQIGGLAPDSR LRFLRQ
Sbjct: 301 FVSTTQIGGLAPDSRSLRFLRQ 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109276|ref|XP_002315145.1| predicted protein [Populus trichocarpa] gi|222864185|gb|EEF01316.1| predicted protein [Populus trichocarpa]

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/273 (71%), Positives = 239/273 (87%)

Query: 60  RPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIIN 119
           R   +N F RI++  VP+RVHDV++KGNTKTKD LIEA   ++++A+T+QE+  A++ +N
Sbjct: 55  RNSFQNFFSRIQHESVPIRVHDVVIKGNTKTKDYLIEALTASLKDASTIQELFAASSEVN 114

Query: 120 YKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGS 179
           ++L+ LE FDSV+ITLDSGPPELPGT+NVI+ VVET++PL G+IG + KGEA SS++EG+
Sbjct: 115 FRLQALEIFDSVKITLDSGPPELPGTANVIVDVVETRSPLLGEIGVFNKGEASSSSLEGT 174

Query: 180 LKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSY 239
           LKYKN FGYGDLWD +LAY  DR AEVSAGV+LPRFKGLVTP+TAR+FLQSQD LKFSS+
Sbjct: 175 LKYKNIFGYGDLWDGALAYDCDRKAEVSAGVFLPRFKGLVTPVTARLFLQSQDCLKFSSF 234

Query: 240 KEQSLGLSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKR 299
           KE+SLGLSLGLFS R+HDLVYNLAWRTLTDPS M+S+++RRQLGH  LSSLKYTFK D+R
Sbjct: 235 KERSLGLSLGLFSTRNHDLVYNLAWRTLTDPSRMASSSIRRQLGHGLLSSLKYTFKIDRR 294

Query: 300 NSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQ 332
           NSPLRPT G+AFVS+TQIGGLAPDSR LRFLRQ
Sbjct: 295 NSPLRPTHGFAFVSSTQIGGLAPDSRSLRFLRQ 327

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228433|ref|NP_187718.1| outer membrane OMP85-like protein [Arabidopsis thaliana] gi|6016688|gb|AAF01515.1|AC009991_11 unknown protein [Arabidopsis thaliana] gi|12321882|gb|AAG50978.1|AC073395_20 unknown protein; 4967-6981 [Arabidopsis thaliana] gi|20466221|gb|AAM20428.1| unknown protein [Arabidopsis thaliana] gi|25084079|gb|AAN72169.1| unknown protein [Arabidopsis thaliana] gi|332641478|gb|AEE74999.1| outer membrane OMP85-like protein [Arabidopsis thaliana]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 190/277 (68%), Positives = 235/277 (84%)

Query: 56  SRVDRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAA 115
           S VDR K E+LFRR+R  PVP+RVHDVI+ GN KTKD +IEAE+DA+R ATT+QE+++A+
Sbjct: 56  SSVDRIKAESLFRRMRAAPVPVRVHDVIIGGNEKTKDHIIEAEVDAVREATTLQELLEAS 115

Query: 116 NIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSST 175
            + N  LR L+ FDSV ITLDSGPPELPGT+NV+I VVE+K+PL+GQIG YT+ EA+SS+
Sbjct: 116 RVANSNLRALDIFDSVNITLDSGPPELPGTTNVVIDVVESKSPLTGQIGAYTRAEARSSS 175

Query: 176 VEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLK 235
           VE SLKYKN FGYGD+WD S+ YG D SAEV  G+YLPRF+GL TP T+R+FL +QDWLK
Sbjct: 176 VEASLKYKNIFGYGDIWDGSIVYGCDNSAEVGLGMYLPRFRGLSTPFTSRLFLSTQDWLK 235

Query: 236 FSSYKEQSLGLSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFK 295
           FSSYKE+SLGLSLGLFS ++H+L+Y +AWR L DPS  ++ ++RRQLGH  LS+LKYTF+
Sbjct: 236 FSSYKERSLGLSLGLFSSKYHELIYTIAWRNLIDPSQAAAVSIRRQLGHSLLSALKYTFR 295

Query: 296 FDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQ 332
           FD+RNS LRPT GYAF+ST+QIGGLAPDSR LRFL+Q
Sbjct: 296 FDQRNSSLRPTNGYAFISTSQIGGLAPDSRSLRFLKQ 332

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806563|ref|XP_002871165.1| outer membrane OMP85 family protein [Arabidopsis lyrata subsp. lyrata] gi|297317002|gb|EFH47424.1| outer membrane OMP85 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/330 (60%), Positives = 267/330 (80%), Gaps = 5/330 (1%)

Query: 7   IPGPEQKPEAL--NPNLDEIEEEEEEDDDVVEEEDDDDLEEDDDAAQPQRK--SRVDRPK 62
           +  P +KPE +   P L E ++E EE +D+   E++++  ED+D  +P+ +  +  DR K
Sbjct: 1   MANPTEKPEPIPSTPKL-EPKDEREELEDINGGEEEEEEYEDEDDGKPRTREDAIADRIK 59

Query: 63  IENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKL 122
            E+LFRR+R  PV +RVHDVIVKGN KTKD +IEAE+D +R ATT+QE+++A+ + N+ L
Sbjct: 60  AESLFRRMRETPVAVRVHDVIVKGNEKTKDHVIEAEVDVLRQATTLQELLKASKVANFNL 119

Query: 123 RELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKY 182
           + L+ FD+V+ITLDSGPPELPGT+NV+I VVE+K+P +GQ+GT+TK EA+SS++EGSLKY
Sbjct: 120 QALDIFDAVKITLDSGPPELPGTTNVVIDVVESKSPFTGQVGTFTKAEARSSSLEGSLKY 179

Query: 183 KNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQ 242
           KN FGYGD+WD SLAYG D S EV  G+ LPRF+G  TP T+RV+L +QDWLKFSSYKE+
Sbjct: 180 KNIFGYGDIWDGSLAYGCDHSTEVGLGMCLPRFRGRPTPFTSRVYLSTQDWLKFSSYKER 239

Query: 243 SLGLSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSP 302
           +LGLSLGL + ++H+L YN+AWR + DPS M+S ++RRQLGH+ +S+LKYTFKFD+RNS 
Sbjct: 240 ALGLSLGLIASKYHELAYNIAWRNVIDPSQMASRSIRRQLGHNLVSALKYTFKFDQRNSS 299

Query: 303 LRPTRGYAFVSTTQIGGLAPDSRCLRFLRQ 332
           LRPTRGY+F+ST+QIGGLAPDSR LRFLRQ
Sbjct: 300 LRPTRGYSFISTSQIGGLAPDSRTLRFLRQ 329

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448511|ref|XP_002273082.1| PREDICTED: sorting and assembly machinery component 50 homolog B-like [Vitis vinifera]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/330 (63%), Positives = 257/330 (77%), Gaps = 8/330 (2%)

Query: 11  EQKPEALNPNLDEIEEEEEEDDDVVE------EEDDDDLEEDDDAAQPQRKSRV--DRPK 62
           E+ P + NPN DE   EE + D V +      +E +++ EE++  ++  R+SR+  D  K
Sbjct: 8   EETPISENPNGDEEGGEESQADGVGDFEDEDEDEAEEEDEEEEARSEKSRESRLAEDGSK 67

Query: 63  IENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKL 122
           +E++FRR+ +  V LRVHDV++KGNTKTKD LIEAEL+AI+NATTMQE+++AA I N++ 
Sbjct: 68  LESMFRRLASEKVKLRVHDVLIKGNTKTKDSLIEAELEAIKNATTMQELLKAAGIANHRF 127

Query: 123 RELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKY 182
                FDSV ITLD GPPELPGT NVI+ VVETK PL+G +G +TK EA++ ++EGSLK 
Sbjct: 128 HSFGIFDSVGITLDCGPPELPGTVNVIVDVVETKNPLTGDLGIFTKPEARTWSLEGSLKL 187

Query: 183 KNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQ 242
           KN FGYGDLWD SL YG+D+S+E+SAGV LPRFKG+VTPM ARV L SQDWLKFSSYKE+
Sbjct: 188 KNLFGYGDLWDGSLVYGWDQSSEISAGVSLPRFKGMVTPMLARVSLLSQDWLKFSSYKER 247

Query: 243 SLGLSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSP 302
           SLGL+LGL S + HDL YNL WRTLTDPS MSS  VRRQLGH  LSSLKYTF+ D RNS 
Sbjct: 248 SLGLNLGLISTKRHDLTYNLLWRTLTDPSQMSSRAVRRQLGHGLLSSLKYTFRIDNRNSV 307

Query: 303 LRPTRGYAFVSTTQIGGLAPDSRCLRFLRQ 332
           LRPT+GYAF+ST+QIGGL PD R LRFLRQ
Sbjct: 308 LRPTQGYAFISTSQIGGLVPDYRSLRFLRQ 337

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574840|ref|XP_002528327.1| sorting and assembly machinery (sam50) protein, putative [Ricinus communis] gi|223532282|gb|EEF34085.1| sorting and assembly machinery (sam50) protein, putative [Ricinus communis]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/280 (69%), Positives = 244/280 (87%)

Query: 53  QRKSRVDRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEII 112
           + ++RV+R K+ENL RR++   VPLRVHDVI+KGN KTKD ++E+E   +++ ++MQE++
Sbjct: 42  ESQARVEREKVENLIRRMQTETVPLRVHDVIIKGNVKTKDSILESETALLKDVSSMQELL 101

Query: 113 QAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAK 172
           +A+ ++N++L+ LE FDSV ITLDSGP EL GT+NV+++VVE+K+P+S ++G YTKGEA+
Sbjct: 102 EASKVVNFRLQALEVFDSVRITLDSGPSELAGTANVVVEVVESKSPVSCEVGAYTKGEAR 161

Query: 173 SSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQD 232
           SSTVEG+LKYKN FGYGDLWD+S+AYG D   EVSAGVY+PRFKG VTP+TAR+FL SQD
Sbjct: 162 SSTVEGTLKYKNLFGYGDLWDSSVAYGGDHMTEVSAGVYVPRFKGRVTPLTARLFLLSQD 221

Query: 233 WLKFSSYKEQSLGLSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKY 292
           WL+FSSYKE+SLGLSLGL S R+HDLVYNLAWRTLTDPS M+S ++RRQLGH  LSSLKY
Sbjct: 222 WLRFSSYKERSLGLSLGLVSSRNHDLVYNLAWRTLTDPSQMASRSIRRQLGHGLLSSLKY 281

Query: 293 TFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQ 332
           TFK D+RNSPLRPT GYAFVSTTQ+GGLAPDSR LRFLRQ
Sbjct: 282 TFKVDQRNSPLRPTHGYAFVSTTQVGGLAPDSRSLRFLRQ 321

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866157|emb|CAN84130.1| hypothetical protein VITISV_041873 [Vitis vinifera]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/336 (62%), Positives = 259/336 (77%), Gaps = 8/336 (2%)

Query: 11  EQKPEALNPNLDEIEEEEEEDDDVVE------EEDDDDLEEDDDAAQPQRKSRV--DRPK 62
           E+ P + NPN DE   EE + D V +      +E +++ EE++  ++  R+SR+  D  K
Sbjct: 8   EETPISENPNGDEEGGEESQADGVGDFEDEDEDEAEEEDEEEEARSEKSRESRLAEDGSK 67

Query: 63  IENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKL 122
           +E++FRR+ +  V LRVHDV++KGNTKTKD LIEAEL+AI+NATTMQE+++AA I N++ 
Sbjct: 68  LESMFRRLASEKVKLRVHDVLIKGNTKTKDSLIEAELEAIKNATTMQELLKAAGIANHRF 127

Query: 123 RELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKY 182
                FDSV ITLD GPPELPGT NVI+ VVETK PL+G +G +TK EA++ ++EGSLK 
Sbjct: 128 HSFGIFDSVGITLDCGPPELPGTVNVIVDVVETKNPLTGDLGIFTKPEARTWSLEGSLKL 187

Query: 183 KNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQ 242
           KN FGYGDLWD SL YG+D+S+E+SAGV LPRFKG+VTPM ARV L SQDWLKFSSYKE+
Sbjct: 188 KNLFGYGDLWDGSLVYGWDQSSEISAGVSLPRFKGMVTPMLARVSLLSQDWLKFSSYKER 247

Query: 243 SLGLSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSP 302
           SLGL+LGL S + HDL YNL WRTLTDPS MSS  VRRQLGH  LSSLKYTF+ D RNS 
Sbjct: 248 SLGLNLGLISTKRHDLTYNLLWRTLTDPSQMSSRAVRRQLGHGLLSSLKYTFRIDNRNSV 307

Query: 303 LRPTRGYAFVSTTQIGGLAPDSRCLRFLRQFFCLLL 338
           LRPT+GYAF+ST+QIGGL PD R LRFLRQ    +L
Sbjct: 308 LRPTQGYAFISTSQIGGLVPDYRSLRFLRQLCTKIL 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444624|ref|XP_004140074.1| PREDICTED: sorting and assembly machinery component 50 homolog [Cucumis sativus] gi|449490420|ref|XP_004158600.1| PREDICTED: sorting and assembly machinery component 50 homolog [Cucumis sativus]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/277 (69%), Positives = 233/277 (84%)

Query: 60  RPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIIN 119
           R K+ENL  R+R   V LRVHD+++KGNTKTKD LIEAE++AI+ A+TMQE+++AA + N
Sbjct: 66  RSKLENLVERMRKEKVRLRVHDILIKGNTKTKDSLIEAEVEAIKTASTMQELLEAAGVAN 125

Query: 120 YKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGS 179
            KL+ LE FDSV+ITLDSGPPELPGT+NV+I+VVET  PLSG+ G YTK  A+S T EGS
Sbjct: 126 AKLQRLEIFDSVKITLDSGPPELPGTANVVIEVVETGNPLSGECGAYTKPAARSWTFEGS 185

Query: 180 LKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSY 239
           +KYKN  GYGDLWD SLAYG ++++EVSAGVY PR K LVTP+ AR+ L SQDWL+FSSY
Sbjct: 186 VKYKNWLGYGDLWDGSLAYGPNQTSEVSAGVYFPRLKRLVTPLVARLSLLSQDWLEFSSY 245

Query: 240 KEQSLGLSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKR 299
           KE+SLGLSLGL+S ++HDL YNL WRT+TDPS M+SN+VRRQLG+  LSSLKYTFK DKR
Sbjct: 246 KERSLGLSLGLYSTKYHDLGYNLGWRTITDPSQMASNSVRRQLGNSLLSSLKYTFKVDKR 305

Query: 300 NSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQFFCL 336
           NS +RPTRGYAFVST+Q+GGLAPD R LRF+RQ F L
Sbjct: 306 NSAVRPTRGYAFVSTSQVGGLAPDHRSLRFVRQEFDL 342

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
TAIR|locus:2074618	520	AT3G11070 "AT3G11070" [Arabido	0.795	0.517	0.684	2.3e-101
TAIR|locus:2169702	524	AT5G05520 "AT5G05520" [Arabido	0.786	0.507	0.684	3.8e-101
ZFIN|ZDB-GENE-041114-30	469	samm50l "sorting and assembly	0.689	0.496	0.273	4e-12
UNIPROTKB|Q9Y512	469	SAMM50 "Sorting and assembly m	0.692	0.498	0.274	1.2e-11
MGI|MGI:1915903	469	Samm50 "sorting and assembly m	0.692	0.498	0.270	1.2e-11
UNIPROTKB|F6UPR4	456	SAMM50 "Uncharacterized protei	0.692	0.513	0.270	4.7e-11
UNIPROTKB|E1C8A2	469	SAMM50 "Uncharacterized protei	0.692	0.498	0.262	5e-11
UNIPROTKB|E2QSZ0	469	SAMM50 "Uncharacterized protei	0.692	0.498	0.270	5e-11
RGD|1303219	469	Samm50 "sorting and assembly m	0.692	0.498	0.262	1.1e-10
UNIPROTKB|G3MZZ3	469	SAMM50 "Sorting and assembly m	0.686	0.494	0.272	1.9e-10

TAIR|locus:2074618 AT3G11070 "AT3G11070" [Arabidopsis thaliana (taxid:3702)]

 Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
 Identities = 184/269 (68%), Positives = 228/269 (84%)

Query:    56 SRVDRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAA 115
             S VDR K E+LFRR+R  PVP+RVHDVI+ GN KTKD +IEAE+DA+R ATT+QE+++A+
Sbjct:    56 SSVDRIKAESLFRRMRAAPVPVRVHDVIIGGNEKTKDHIIEAEVDAVREATTLQELLEAS 115

Query:   116 NIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSST 175
              + N  LR L+ FDSV ITLDSGPPELPGT+NV+I VVE+K+PL+GQIG YT+ EA+SS+
Sbjct:   116 RVANSNLRALDIFDSVNITLDSGPPELPGTTNVVIDVVESKSPLTGQIGAYTRAEARSSS 175

Query:   176 VEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLK 235
             VE SLKYKN FGYGD+WD S+ YG D SAEV  G+YLPRF+GL TP T+R+FL +QDWLK
Sbjct:   176 VEASLKYKNIFGYGDIWDGSIVYGCDNSAEVGLGMYLPRFRGLSTPFTSRLFLSTQDWLK 235

Query:   236 FSSYKEQSLGLSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFK 295
             FSSYKE+SLGLSLGLFS ++H+L+Y +AWR L DPS  ++ ++RRQLGH  LS+LKYTF+
Sbjct:   236 FSSYKERSLGLSLGLFSSKYHELIYTIAWRNLIDPSQAAAVSIRRQLGHSLLSALKYTFR 295

Query:   296 FDKRNSPLRPTRGYAFVSTTQIGGLAPDS 324
             FD+RNS LRPT GYAF+ST+QIGGLAPDS
Sbjct:   296 FDQRNSSLRPTNGYAFISTSQIGGLAPDS 324

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031307 "integral to mitochondrial outer membrane" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2169702 AT5G05520 "AT5G05520" [Arabidopsis thaliana (taxid:3702)]

 Score = 1003 (358.1 bits), Expect = 3.8e-101, P = 3.8e-101
 Identities = 182/266 (68%), Positives = 231/266 (86%)

Query:    59 DRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANII 118
             DR K E+LFRR+R  PV +RVHDVIVKGN KTKD +IEAE+D +R ATT+QE+++A+ + 
Sbjct:    56 DRIKAESLFRRMRATPVAVRVHDVIVKGNEKTKDHVIEAEVDVVRQATTLQELLKASKVA 115

Query:   119 NYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEG 178
             N+ L+ L+ FDSV+ITLDSGPPELPGT+NV+I VVE+K+P++GQIGT+TK EA+SS++EG
Sbjct:   116 NFNLQALDIFDSVKITLDSGPPELPGTTNVVIDVVESKSPITGQIGTFTKAEARSSSLEG 175

Query:   179 SLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSS 238
             SLKYKN FGYGD+WD SLAYG D SAEV  G+YLPRF+G  TP T+RV+L +QDWLKFSS
Sbjct:   176 SLKYKNIFGYGDIWDGSLAYGCDHSAEVGLGMYLPRFRGRPTPFTSRVYLSTQDWLKFSS 235

Query:   239 YKEQSLGLSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDK 298
             YKE++LGLSLGL + ++H+L YN+AWR L DPS M+S ++RRQLGH+ +S+LKYTFKFD+
Sbjct:   236 YKERALGLSLGLIASKYHELAYNIAWRNLIDPSQMASRSIRRQLGHNLVSALKYTFKFDQ 295

Query:   299 RNSPLRPTRGYAFVSTTQIGGLAPDS 324
             RNS LRPTRGY+F+ST+QIGGLAPDS
Sbjct:   296 RNSSLRPTRGYSFISTSQIGGLAPDS 321

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051604 "protein maturation" evidence=RCA

ZFIN|ZDB-GENE-041114-30 samm50l "sorting and assembly machinery component 50 homolog, like" [Danio rerio (taxid:7955)]

 Score = 186 (70.5 bits), Expect = 4.0e-12, P = 4.0e-12
 Identities = 68/249 (27%), Positives = 112/249 (44%)

Query:    79 VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLD-- 136
             V  V ++G  +TK+  +  E+  +  A  + E+++ ++    +L  L  F  VE+ +D  
Sbjct:    47 VQHVNIEGLGRTKEDYLGYEISDVFTARNLVEVMRKSHEARQRLLRLGIFRDVEVVIDIS 106

Query:   137 SGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASL 196
              G   LP   +V  +V E K  L+G   T   G  + S V G +K  N  G G+      
Sbjct:   107 EGADALPNGLDVTFEVTELKR-LTGSYNTMV-GNNEGSMVLG-IKLPNMLGRGEKLTFQF 163

Query:   197 AYGFDRSAEVSAGV--YLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLG----LSLGL 250
             +YG   + E S G+  + P+        T  ++  +  +  +SS KE   G    LSL L
Sbjct:   164 SYG---TKETSYGLSFFKPQSGYFERNFTVNLYKVTGQF-PWSSLKETDRGVSTELSLPL 219

Query:   251 FSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYA 310
             + +  H L +   WR L   +  +S  VR + GH   S+L +T   D RNS + P +G  
Sbjct:   220 W-MTDHTLKWEGVWRELGCLARSASFAVREESGHTLKSALSHTMVVDTRNSAILPRKGAL 278

Query:   311 FVSTTQIGG 319
                  ++ G
Sbjct:   279 LRINQELAG 287

GO:0019867 "outer membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

UNIPROTKB|Q9Y512 SAMM50 "Sorting and assembly machinery component 50 homolog" [Homo sapiens (taxid:9606)]

 Score = 182 (69.1 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 68/248 (27%), Positives = 109/248 (43%)

Query:    79 VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS- 137
             V  V   G  +TKD +I  E+  +  A  + E+++ ++    KL  L  F  V++ +D+ 
Sbjct:    47 VQHVHFDGLGRTKDDIIICEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTC 106

Query:   138 -GPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASL 196
              G   LP   +V  +V E +  L+G   T   G  + S V G LK  N  G  +      
Sbjct:   107 QGDDALPNGLDVTFEVTELRR-LTGSYNTMV-GNNEGSMVLG-LKLPNLLGRAEKVTFQF 163

Query:   197 AYGFDRSAEVSAGV--YLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL-FSI 253
             +YG   + E S G+  + PR        +  ++  +  +  +SS +E   G+S    F I
Sbjct:   164 SYG---TKETSYGLSFFKPRPGNFERNFSVNLYKVTGQF-PWSSLRETDRGMSAEYSFPI 219

Query:   254 --RHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAF 311
                 H + +   WR L   S  +S  VR++ GH   SSL +    D RNS + P RG   
Sbjct:   220 WKTSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALL 279

Query:   312 VSTTQIGG 319
                 ++ G
Sbjct:   280 KVNQELAG 287

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0016021 "integral to membrane" evidence=IDA

GO:0001401 "mitochondrial sorting and assembly machinery complex" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0045040 "protein import into mitochondrial outer membrane" evidence=IDA

MGI|MGI:1915903 Samm50 "sorting and assembly machinery component 50 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 182 (69.1 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 67/248 (27%), Positives = 110/248 (44%)

Query:    79 VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS- 137
             V  V   G  +TKD +I  E+  +  A  + E+++ ++    KL  L  F  V++ +D+ 
Sbjct:    47 VQHVHFDGLGRTKDDIIICEIGEVFKAKNLIEVMRRSHEAREKLLRLGIFRQVDVLIDTC 106

Query:   138 -GPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASL 196
              G   LP   +V  +V E +  L+G   T   G  + S V G LK  N  G  +      
Sbjct:   107 HGEDALPNGLDVTFEVTELRR-LTGSYNTMV-GNNEGSMVLG-LKLPNLLGRAEKVTFQF 163

Query:   197 AYGFDRSAEVSAGV--YLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL-FSI 253
             +YG   + E S G+  + P+        +  ++  +  +  +SS +E   G+S    F +
Sbjct:   164 SYG---TKETSYGLSFFKPQPGNFERNFSVNLYKVTGQF-PWSSLRETDRGVSAEYSFPL 219

Query:   254 --RHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAF 311
                 H + +   WR L   S  +S  VR++ GH   SSL +    D RNS + P RG  F
Sbjct:   220 WKTSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALF 279

Query:   312 VSTTQIGG 319
                 ++ G
Sbjct:   280 KVNQELAG 287

GO:0001401 "mitochondrial sorting and assembly machinery complex" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0019867 "outer membrane" evidence=IEA

GO:0045040 "protein import into mitochondrial outer membrane" evidence=ISO

UNIPROTKB|F6UPR4 SAMM50 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 177 (67.4 bits), Expect = 4.7e-11, P = 4.7e-11
 Identities = 67/248 (27%), Positives = 109/248 (43%)

Query:    79 VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS- 137
             V  V   G  +TKD +I  E+  +  A  + E+++ ++    KL  L  F  V++ +D+ 
Sbjct:    47 VQHVHFDGLGRTKDDIIICEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTC 106

Query:   138 -GPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASL 196
              G   LP   +V  +V E +  L+G   T   G  + S V G LK  N  G  +      
Sbjct:   107 QGDDALPNGLDVTFEVTELRR-LTGSYNTMV-GNNEGSMVLG-LKLPNLLGRAEKVTFQF 163

Query:   197 AYGFDRSAEVSAGV--YLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL-FSI 253
             +YG   + E S G+  + P+        +  ++  +  +  +SS +E   G+S    F I
Sbjct:   164 SYG---TKETSYGLSFFKPQPGNFERNFSVNLYKVTGQF-PWSSLRETDRGVSAEYSFPI 219

Query:   254 --RHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAF 311
                 H + +   WR L   S  +S  VR++ GH   SSL +    D RNS + P RG   
Sbjct:   220 WKTSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALL 279

Query:   312 VSTTQIGG 319
                 ++ G
Sbjct:   280 KVNQELAG 287

GO:0019867 "outer membrane" evidence=IEA

UNIPROTKB|E1C8A2 SAMM50 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 177 (67.4 bits), Expect = 5.0e-11, P = 5.0e-11
 Identities = 65/248 (26%), Positives = 111/248 (44%)

Query:    79 VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS- 137
             V  V   G  +T+D +I  E+  +  A  + ++++ ++    KL  L  F  VE+ +D+ 
Sbjct:    47 VQHVHFDGLGRTRDDIIMYEIADVFKAKNLIDVMRKSHEAREKLLRLGIFRQVEVLIDTC 106

Query:   138 -GPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASL 196
              G   LP   +V  +V E +  L+G   T   G  + S V G LK+ N  G  +      
Sbjct:   107 QGDDALPNGLDVTFEVTELRR-LTGSYNTMV-GNNEGSMVLG-LKFPNLLGRAEKVTFQF 163

Query:   197 AYGFDRSAEVSAGV--YLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL-FSI 253
             +YG   + E S G+  + P+        +  ++  +  +  +SS +E   G+S    F I
Sbjct:   164 SYG---TKETSYGLSFFKPQPGNFERNFSVNLYKVTGQF-PWSSLRETDRGISTEFNFPI 219

Query:   254 --RHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAF 311
                +H L +   WR L   +  +S +VR + GH   SS+ +    D RNS + P RG   
Sbjct:   220 WKTNHTLKWEGVWRELGCLARTASFSVREESGHSLKSSISHAMVIDSRNSSILPKRGALL 279

Query:   312 VSTTQIGG 319
                 ++ G
Sbjct:   280 KINQELAG 287

GO:0001401 "mitochondrial sorting and assembly machinery complex" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045040 "protein import into mitochondrial outer membrane" evidence=IEA

UNIPROTKB|E2QSZ0 SAMM50 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 177 (67.4 bits), Expect = 5.0e-11, P = 5.0e-11
 Identities = 67/248 (27%), Positives = 109/248 (43%)

Query:    79 VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS- 137
             V  V   G  +TKD +I  E+  +  A  + E+++ ++    KL  L  F  V++ +D+ 
Sbjct:    47 VQHVHFDGLGRTKDDIIICEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTC 106

Query:   138 -GPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASL 196
              G   LP   +V  +V E +  L+G   T   G  + S V G LK  N  G  +      
Sbjct:   107 QGDDALPNGLDVTFEVTELRR-LTGSYNTMV-GNNEGSMVLG-LKLPNLLGRAEKVTFQF 163

Query:   197 AYGFDRSAEVSAGV--YLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL-FSI 253
             +YG   + E S G+  + P+        +  ++  +  +  +SS +E   G+S    F I
Sbjct:   164 SYG---TKETSYGLSFFKPQPGNFERNFSVNLYKVTGQF-PWSSLRETDRGVSAEYSFPI 219

Query:   254 --RHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAF 311
                 H + +   WR L   S  +S  VR++ GH   SSL +    D RNS + P RG   
Sbjct:   220 WKTSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALL 279

Query:   312 VSTTQIGG 319
                 ++ G
Sbjct:   280 KVNQELAG 287

GO:0045040 "protein import into mitochondrial outer membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0001401 "mitochondrial sorting and assembly machinery complex" evidence=IEA

RGD|1303219 Samm50 "sorting and assembly machinery component 50 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 174 (66.3 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 65/248 (26%), Positives = 109/248 (43%)

Query:    79 VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS- 137
             V  V   G  +TKD +I  E+  +  A  + E+++ ++    KL  L  F  V++ +D+ 
Sbjct:    47 VQHVHFDGLERTKDDIIICEIGEVFKAKNLIEVMRRSHEAREKLLRLGIFRQVDVLIDTC 106

Query:   138 -GPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASL 196
              G   LP   +V  +V E +  L+G   T   G  + S V G LK  N  G  +      
Sbjct:   107 HGEDALPNGLDVTFEVTELRR-LTGSYNTMV-GNNEGSMVLG-LKLPNLLGRAEKVTFQF 163

Query:   197 AYGFDRSAEVSAGV--YLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL-FSI 253
             +YG   + E S G+  + P+        +  ++  +  +  +SS +E   G+S    F +
Sbjct:   164 SYG---TKETSYGLSFFKPQPGNFEKNFSVNLYKVTGQF-PWSSLRETDRGVSAEYSFPL 219

Query:   254 --RHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAF 311
                 H + +   WR L   +  +S  VR++ GH   SSL +    D RNS + P RG   
Sbjct:   220 CKTSHTVKWEGVWRELGCLARTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALL 279

Query:   312 VSTTQIGG 319
                 ++ G
Sbjct:   280 KVNQELAG 287

GO:0001401 "mitochondrial sorting and assembly machinery complex" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005741 "mitochondrial outer membrane" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA;ISO

GO:0045040 "protein import into mitochondrial outer membrane" evidence=IEA;ISO

UNIPROTKB|G3MZZ3 SAMM50 "Sorting and assembly machinery component 50 homolog" [Bos taurus (taxid:9913)]

 Score = 172 (65.6 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 68/250 (27%), Positives = 109/250 (43%)

Query:    79 VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS- 137
             V  V   G  +TKD +I  E+  +  A  + E+++ ++    KL  L  F  V++ +D+ 
Sbjct:    47 VQHVHFDGLGRTKDDIIMYEIRDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTC 106

Query:   138 -GPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASL 196
              G   LP   +V  +V E +  L+G   T   G  + S V G LK  N  G  +      
Sbjct:   107 QGDDALPNGLDVTFEVTELRR-LTGSYNTMV-GNNEGSMVLG-LKLPNLLGRAEKVTFQF 163

Query:   197 AYGFDRSAEVSAGV--YLPRFKGLVTPMTAR--VFLQSQDWLKFSSYKEQSLGLSLGL-F 251
             +YG   + E S G+  + P+        +      ++   W   SS   QS+G+S    F
Sbjct:   164 SYG---TKETSYGLSFFKPQPGNFDRNFSVNDHTIMEMFPW---SSLGGQSIGVSASTSF 217

Query:   252 SI--RHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGY 309
                   H + +   WR L   S ++S  VR++ GH   SSL ++   D RNS + P RG 
Sbjct:   218 PTWKTSHTVKWEGVWRELGCLSRVASFAVRKESGHSLKSSLSHSMVIDSRNSSILPKRGA 277

Query:   310 AFVSTTQIGG 319
                   ++ G
Sbjct:   278 LLKVNQELAG 287

GO:0045040 "protein import into mitochondrial outer membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0001401 "mitochondrial sorting and assembly machinery complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT5G05520	outer membrane OMP85 family protein; outer membrane OMP85 family protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- mitochondrion, plastid; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- Bacterial surface antigen (D15) (InterPro-IPR000184), Surface antigen variable number (InterPro-IPR010827); BEST Arabidopsis thaliana protein match is- outer membrane OMP85 family protein (TAIR-AT3G11070.1); Has 1168 Blast hits to 1166 proteins in 370 species- Archae - 0; Bacteria - 488; Metazoa - 1 [...] (524 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT2G19080	metaxin-related; metaxin-related; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- protei [...] (315 aa)						•	•		0.933
	AT3G11070	outer membrane OMP85 family protein; outer membrane OMP85 family protein; FUNCTIONS IN- molecul [...] (520 aa)			•			•	•	•	0.904
	DL4605C	unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (4218 aa)							•		0.867
	MIRO2	MIRO2 (MIRO-RELATED GTP-ASE 2); GTPase/ calcium ion binding; Encodes a calcium binding GTPases [...] (643 aa)							•		0.786
	MIRO1	MIRO1 (Miro-related GTP-ase 1); GTP binding; Encodes a protein with similarity to GTPases that [...] (648 aa)				•			•		0.703
	HKL1	HKL1 (HEXOKINASE-LIKE 1); ATP binding / fructokinase/ glucokinase/ hexokinase; HEXOKINASE-LIKE [...] (498 aa)							•		0.659
	BIGYIN	BIGYIN; binding; Encodes a protein with similarity to yeast FIS proteins. These membrane anchor [...] (170 aa)							•		0.599
	AT3G52730	ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein; ubiquinol-cytochrome C reducta [...] (72 aa)							•		0.563
	AT1G24267	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (344 aa)							•		0.563
	AT5G55610	unknown protein; unknown protein; LOCATED IN- mitochondrion, chloroplast, plastid, membrane; EX [...] (329 aa)				•			•		0.554

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	338
COG4775	766	COG4775, COG4775, Outer membrane protein/protectiv	3e-19
TIGR03303	741	TIGR03303, OM_YaeT, outer membrane protein assembl	2e-10
pfam01103	317	pfam01103, Bac_surface_Ag, Surface antigen	8e-10
pfam09538	104	pfam09538, FYDLN_acid, Protein of unknown function	4e-04
pfam09538	104	pfam09538, FYDLN_acid, Protein of unknown function	0.001
pfam03066	146	pfam03066, Nucleoplasmin, Nucleoplasmin	0.002
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.004

>gnl|CDD|227116 COG4775, COG4775, Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]

 Score = 88.2 bits (219), Expect = 3e-19
 Identities = 59/259 (22%), Positives = 99/259 (38%), Gaps = 29/259 (11%)

Query: 79  VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSG 138
           V  + ++GNT+TKD +I  E+         ++++Q       +L     F+SV I    G
Sbjct: 346 VRRIRIRGNTRTKDYVIRREMRLKEGDVFNRKLVQRGKRRLRRLGY---FESVNIDTAPG 402

Query: 139 PPELPGTSNVIIQVVETKTPLSGQIGT---YTKGEAKSSTVEGSLKYKNGFGYGDLWDAS 195
                   +V++ V E  T   G I     Y      S     SL  +N  G G     +
Sbjct: 403 S--GSDQVDVVVDVKERST---GSINFGLGYGSDSGLS--GFASLSERNFLGTGQSLSLN 455

Query: 196 LAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFS----SYKEQSLGLSLGLF 251
              G  +++  S     P F      +   +F    D         SY+ ++ G  + L 
Sbjct: 456 ANLGDKQTS-YSLSFTDPYFLDDRVSLGFNLFSNRYDTFDADTANDSYRVKTYGGGVSLG 514

Query: 252 -----SIRHHDLVYNLAWRTLTDPS-----HMSSNTVRRQLGHDFLSSLKYTFKFDKRNS 301
                ++    L Y     +L+  +       +S  V+ Q G   LSSL   + +D R++
Sbjct: 515 RPITENLSLG-LGYGYEQNSLSLLNKSPPDEYASLGVKLQGGKSDLSSLSLGWTYDTRDN 573

Query: 302 PLRPTRGYAFVSTTQIGGL 320
            L PT+G     T ++ GL
Sbjct: 574 ALFPTKGSYLSLTQEVAGL 592

Length = 766

>gnl|CDD|234165 TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 61/264 (23%), Positives = 105/264 (39%), Gaps = 31/264 (11%)

Query: 78  RVHDVIVKGNTKTKDCLIEAELDAIRNAT-TMQEIIQAANIINYKLRELECFDSVEITLD 136
            V  + + GNT+T+D +I  EL  +     ++ +I ++      +L  L  F++V I   
Sbjct: 323 YVRRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRSKR----RLERLGYFETVNIE-- 376

Query: 137 SGPPELPGTSN----VIIQVVETKT-PLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDL 191
                +P  S     + ++V E  T  +S  +G Y  G +   +   S+  +N  G G+ 
Sbjct: 377 ----TVPVGSPDQVDLNVKVKEQPTGSISFGVG-Y--GSSSGLSFNASISERNFLGTGNR 429

Query: 192 WDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLK--FSSYKEQSLGLSLG 249
              S       ++  S     P F      +   +F    D     FS YK ++ G S+ 
Sbjct: 430 LSLSANKSSLSTS-YSLSFTDPYFTDDGVSLGFSIFYSETDRNYKNFSDYKTKTYGGSIN 488

Query: 250 L-FSIRHHD---LVYNLAWRTLTDPSHMSSNT---VRRQLGHDFLSSLKYTFKFDKRNSP 302
           L + I  +    L Y      + D S   S+    ++ Q G    SSL Y + +D  +S 
Sbjct: 489 LGYPITEYLRVSLGYGYEQNKIKDDSDSDSSASYFIKEQGGKFIDSSLSYGWSYDTLDSG 548

Query: 303 LRPTRGYAFVSTTQ-IGGLAPDSR 325
             PT+G      +Q   G   D +
Sbjct: 549 YFPTKGS-IQRLSQEFAGPGGDLK 571

Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat [Protein fate, Protein and peptide secretion and trafficking]. Length = 741

>gnl|CDD|216300 pfam01103, Bac_surface_Ag, Surface antigen

 Score = 58.6 bits (142), Expect = 8e-10
 Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 10/154 (6%)

Query: 184 NGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQS 243
           N  G G     SL+Y     +  S     P F G    +   +F  + D  ++ SY  +S
Sbjct: 1   NLLGRGQSLSVSLSYSQYEQS-FSLSFTDPYFLGDGLSLGYSLFYNTYDEDEYDSYDTKS 59

Query: 244 LGLSLGL-FSIR-HHDLVYNLAWR---TLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDK 298
           +G SL L + I  +  L   L++       +    +      Q G   LSSL +   +D 
Sbjct: 60  VGFSLSLGYPISENWSLSLGLSYSRDKIRDEDGSDNIRNYASQTGKSLLSSLSFGLSYDT 119

Query: 299 RNSPLRPTRGYAFVSTTQ---IGGLAPDSRCLRF 329
           R++ L PTRGY ++          L  D + L+ 
Sbjct: 120 RDNGLFPTRGY-YLRFNLEFAGPILGGDVKFLKL 152

This entry includes the following surface antigens; D15 antigen from H.influenzae, OMA87 from P.multocida, OMP85 from N.meningitidis and N.gonorrhoeae. The family also includes a number of eukaryotic proteins that are members of the UPF0140 family. There also appears to be a relationship to pfam03865 (personal obs: C Yeats). In eukaryotes, it appears that these proteins are not surface antigens; S. cerevisiae YNL026W (SAM50) is an essential component of the Sorting and Assembly Machinery (SAM) of the mitochondrial outer membrane. The protein was localised to the mitochondria. Length = 317

>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 11/28 (39%), Positives = 22/28 (78%)

Query: 21 LDEIEEEEEEDDDVVEEEDDDDLEEDDD 48
          LD+ ++++++DD    ++DD DL++DDD
Sbjct: 68 LDDDDDDDDDDDLPDLDDDDVDLDDDDD 95

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104

>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 15/41 (36%), Positives = 26/41 (63%)

Query: 8  PGPEQKPEALNPNLDEIEEEEEEDDDVVEEEDDDDLEEDDD 48
              + P A   +  + +E+EE++DDVV ++DDDD ++DD 
Sbjct: 40 VAKSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDL 80

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104

>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 12/36 (33%), Positives = 27/36 (75%), Gaps = 1/36 (2%)

Query: 22  DEIEEEEEEDDDVVEEEDDDDLEEDDDAAQPQRKSR 57
           DE +++EE++++  +EEDDD+ E +++ + P +K +
Sbjct: 112 DESDDDEEDEEEEDDEEDDDEDESEEEES-PVKKVK 146

Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays. Length = 146

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 17  LNPNLDEIEEEEEE------DDDVVEEEDDDDLEEDDDAAQPQRKSRVDRPKIENL 66
           +   LD+I++EEEE      DDD  ++  D D ++++++     ++   +   E L
Sbjct: 218 IQNELDDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIKEVSEKL 273

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	338
COG4775	766	Outer membrane protein/protective antigen OMA87 [C	100.0
KOG2602	457	consensus Predicted cell surface protein homologou	99.97
PRK11067	803	outer membrane protein assembly factor YaeT; Provi	99.97
TIGR03303	741	OM_YaeT outer membrane protein assembly complex, Y	99.97
COG0729	594	Outer membrane protein [Cell envelope biogenesis,	99.96
TIGR00992	718	3a0901s03IAP75 chloroplast envelope protein transl	99.94
PLN03138	796	Protein TOC75; Provisional	99.88
PF01103	323	Bac_surface_Ag: Surface antigen; InterPro: IPR0001	99.37
PF07244	78	Surf_Ag_VNR: Surface antigen variable number repea	98.97
COG2831	554	FhaC Hemolysin activation/secretion protein [Intra	98.82
TIGR03303	741	OM_YaeT outer membrane protein assembly complex, Y	98.31
PF03865	404	ShlB: Haemolysin secretion/activation protein ShlB	98.28
PRK11067	803	outer membrane protein assembly factor YaeT; Provi	97.87
COG4775	766	Outer membrane protein/protective antigen OMA87 [C	97.46
PLN03138	796	Protein TOC75; Provisional	97.43
TIGR00992	718	3a0901s03IAP75 chloroplast envelope protein transl	96.84
PF08478	69	POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013	96.0
PF09026	101	CENP-B_dimeris: Centromere protein B dimerisation	95.33
PRK05529	255	cell division protein FtsQ; Provisional	94.2
COG1589	269	FtsQ Cell division septal protein [Cell envelope b	88.45
PF08479	76	POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013	87.78

>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.1e-32  Score=280.45  Aligned_cols=254  Identities=24%  Similarity=0.290  Sum_probs=219.5

Q ss_pred             CCCCCeEEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEE
Q 019613           72 NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQ  151 (338)
Q Consensus        72 ~~g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~  151 (338)
                      +.|.+++|.+|.|.|+.+|++.||+|+++++||++|+..+++..   .+||++||||++|+|.+.+.+  .+..|+|+|.
T Consensus       339 ~~g~~~~V~~i~i~gn~rT~D~VIrRE~~~~eGd~fn~~~v~~~---~~rL~~lgyF~~V~i~~~~~~--~~~~vdvvv~  413 (766)
T COG4775         339 DEGDRVYVRRIRIRGNTRTKDYVIRREMRLKEGDVFNRKLVQRG---KRRLRRLGYFESVNIDTAPGS--GSDQVDVVVD  413 (766)
T ss_pred             EcCCceeeeeeeecCCCccccHHhhhhhhcCCcchhhHHHHHHH---HHHHHhcCCceeeEEEeccCC--CCCeEEEEEE
Confidence            77999999999999999999999999999999999999999998   999999999999999999753  3448999999


Q ss_pred             EEEccCc-eeeeeeEEecCCCcceEEEEEEEEecCCCCceeEEEEEEeecccceEEEEEEeccccCCCCCCeeEEEEEEe
Q 019613          152 VVETKTP-LSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQS  230 (338)
Q Consensus       152 v~E~~~~-~~~~~G~yst~~~~g~~~~~~~~~~Nl~G~G~~l~~~~~~s~~~~~~~~~~y~~P~~~~~~~~~~~~~~~~~  230 (338)
                      |+|+... +.+|+| |++.  .|+.+.++|+.+|++|.|+.+++.+.++.. .+++.++|+.|++...++.+++++++..
T Consensus       414 VkE~~Tgsi~~G~G-y~s~--~gl~~~~s~~e~N~~G~G~~~~~~~~~g~~-~~~~~l~ft~P~f~~~~~slg~~~f~~~  489 (766)
T COG4775         414 VKERSTGSINFGLG-YGSD--SGLSGFASLSERNFLGTGQSLSLNANLGDK-QTSYSLSFTDPYFLDDRVSLGFNLFSNR  489 (766)
T ss_pred             EEecCceeEEeccc-ccCC--CceEEEEEEEEeecCccccEEEEEEEeccc-eEEEEEEEecccccCCCceeEEEeEeee
Confidence            9999877 677777 9998  899999999999999999999999999999 8999999999999999999999998877


Q ss_pred             ecc--cccc--CceEEEEeeEEEec----CceeEEEEEEEEEEEecCCCC-----CCcHHHHHHhCCCeeeeEEEEEEEe
Q 019613          231 QDW--LKFS--SYKEQSLGLSLGLF----SIRHHDLVYNLAWRTLTDPSH-----MSSNTVRRQLGHDFLSSLKYTFKFD  297 (338)
Q Consensus       231 ~d~--~~~~--~y~~~~~g~~~~l~----~~~~~~l~~~~~~~~~~~~~~-----~~s~~i~~~~~~~~~~~~~~~~~~d  297 (338)
                      .+.  ..++  +|+..+.|+.+.++    .++++.++|.+.+..+.....     ..+.....+.+.....+++++|+||
T Consensus       490 ~~~~~~~~~~~~y~~~~~G~~~~lg~pi~e~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~tyD  569 (766)
T COG4775         490 YDTFDADTANDSYRVKTYGGGVSLGRPITENLSLGLGYGYEQNSLSLLNKSPPDEYASLGVKLQGGKSDLSSLSLGWTYD  569 (766)
T ss_pred             ecccccccccccceEeeccceEEecccccCCceEEEEEEEEEEEeeccccCccccccccccccccCcceeEEEEEeEEEc
Confidence            620  0123  78888888888775    467788888888888774432     1122223344567889999999999


Q ss_pred             cCCCCCCCCCceeeEEEEeeeecCCCccCceEEeeEeEEe
Q 019613          298 KRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQFFCLL  337 (338)
Q Consensus       298 ~rD~~~~Pt~G~~~~~~~e~aglgsd~~~~~f~k~~~~~~  337 (338)
                      +||++++||+|+++++..+++++|+|..   |.|+++++.
T Consensus       570 ~rD~~~~Pt~G~~~~~~~e~~~~Ggd~~---~~K~~~~~~  606 (766)
T COG4775         570 TRDNALFPTKGSYLSLTQEVAGLGGDIK---YYKLELDGS  606 (766)
T ss_pred             CCCCcCCCCCCeEEeeeeEEeccCCcce---EEEEEEEEE
Confidence            9999999999999999999999998866   999998875

>KOG2602 consensus Predicted cell surface protein homologous to bacterial outer membrane proteins [General function prediction only]

Probab=99.97  E-value=4.4e-32  Score=251.54  Aligned_cols=254  Identities=42%  Similarity=0.636  Sum_probs=225.0

Q ss_pred             EEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcC--CCCCCCCeeEEEEEEEEc
Q 019613           78 RVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS--GPPELPGTSNVIIQVVET  155 (338)
Q Consensus        78 ~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~--~~~~~~~~v~V~v~v~E~  155 (338)
                      ++..|.|.|+.+|++++|.+++...--....++++..+..+..+|+++++|++|.|.+|.  ++++.|+...|++.|+|.
T Consensus        37 ~v~~V~v~Gl~~Tkdd~I~k~v~~~~ka~nl~el~~~s~~a~~nL~~l~iF~~v~~~iD~~~g~~~~p~~~~Vt~~v~E~  116 (457)
T KOG2602|consen   37 RVDHVIVSGLERTKDDFIMKEVDLVFKAKNLQELLLASHEAASNLRALGIFDSVNILIDTKEGSDALPGGLVVTFLVTEP  116 (457)
T ss_pred             eeeEEEeccccccchHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHhcccccceeeeccccCCCCCCCceeEEEEeeec
Confidence            789999999999999999999965544555889999999999999999999999999997  345678889999999999


Q ss_pred             cCceeeeeeE-EecCCCcceEEEEEEEEecCCCCceeEEEEEEeecccceEEEEEEeccccCCCCCCeeEEEEEEeeccc
Q 019613          156 KTPLSGQIGT-YTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWL  234 (338)
Q Consensus       156 ~~~~~~~~G~-yst~~~~g~~~~~~~~~~Nl~G~G~~l~~~~~~s~~~~~~~~~~y~~P~~~~~~~~~~~~~~~~~~d~~  234 (338)
                      |+ +++..|+ .+.   ....+.+.+..+|++|+|+.|.+++.++......++++|..|.+.+...++.+...+...||.
T Consensus       117 kr-~tg~~GT~~gn---~~~s~~~~l~~~ni~G~ge~l~~~~sy~~~~~~~~~l~f~~P~~~~~~~~~~~~~~~~~~d~~  192 (457)
T KOG2602|consen  117 KR-LTGSTGTDVGN---REGSVELNLKLPNILGRGENLSGQVSYGCTRSTDMGLSFYKPRFHGLKTPFSSFSIFRTQDWM  192 (457)
T ss_pred             ch-heeeccccccC---CCcccchhcccccccCcceeeeeeEEEecccCceeeeEEEecccCCCCcchhhhhhhhhhccc
Confidence            86 6777663 222   445788899999999999999999999977578999999999998887788888888888999


Q ss_pred             cccCceEEEEeeEEEecC--c--eeEEEEEEEEEEEecCCCCCCcHHHHHHhCCCeeeeEEEEEEEecCCCCCCCCCcee
Q 019613          235 KFSSYKEQSLGLSLGLFS--I--RHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYA  310 (338)
Q Consensus       235 ~~~~y~~~~~g~~~~l~~--~--~~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~~~~~~~~d~rD~~~~Pt~G~~  310 (338)
                      +|++++....|+++.+..  .  +.|.|.|+..|+.+..++..+++.++.|.|++++.++++++.+|+||..+.||+|++
T Consensus       193 ~~ss~d~~~~g~sL~l~~~~~~~l~H~l~~~~~WR~l~~~sq~as~svR~qaG~~L~s~L~~tfv~D~Rd~~~~ptrG~~  272 (457)
T KOG2602|consen  193 KWSSLDETHRGASLELSAEDWFLLFHELKYEIAWRNLGDLSQGASFSVRRQAGHSLKSSLSYTFVFDKRDSSIIPTRGIL  272 (457)
T ss_pred             ccccccccccceEEEEecchhhhhhHHHHHHHHHHhhccccccccHHHHHHhhHHHHHhhcceEEEeccCCcccccccce
Confidence            999999999999998863  2  248899999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeeecCCCccCceEEeeEeEEeC
Q 019613          311 FVSTTQIGGLAPDSRCLRFLRQFFCLLL  338 (338)
Q Consensus       311 ~~~~~e~aglgsd~~~~~f~k~~~~~~~  338 (338)
                      +..+.|++|++++++   |+|.+++++.
T Consensus       273 ~k~~~e~~g~~~~~s---f~k~e~~lq~  297 (457)
T KOG2602|consen  273 LKSTSELAGLFGDVS---FLKSELDLQK  297 (457)
T ss_pred             eEeehhhcCcccchh---hhhhhhhhee
Confidence            999999999999866   9999988763

>PRK11067 outer membrane protein assembly factor YaeT; Provisional

Probab=99.97  E-value=7.8e-30  Score=266.50  Aligned_cols=283  Identities=14%  Similarity=0.157  Sum_probs=225.6

Q ss_pred             cccccccCccCCCccchhHHHHHHhhhc---------------CCCCCeEEEEEEEECCCccCHHHHHHHhhhhccCccH
Q 019613           44 EEDDDAAQPQRKSRVDRPKIENLFRRIR---------------NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTM  108 (338)
Q Consensus        44 ~~ye~~k~~~~~~a~~~gy~~a~~~~~~---------------~~g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~  108 (338)
                      ..+++++..|++...++||+++......               ++|++|+|++|.|.|+.++++.+|+|++++++|++|+
T Consensus       299 ~~~~~~~~~i~~~~~~~GY~~a~v~~~~~~~~~~~~v~i~~~v~eG~~y~ig~I~i~Gn~~~~~~~l~r~l~~~~G~~~~  378 (803)
T PRK11067        299 TKVTKMEDDIKKLLGRYGYAYPRVQTQPEINDADKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLG  378 (803)
T ss_pred             HHHHHHHHHHHHHHHhCCCCcceeeeccccCCCCCEEEEEEEEeeCCeEEEEEEEEECCccccchhhhhheeccccccCC
Confidence            3567788888899999999988763211               7899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEccCc-eeeeeeEEecCCCcceEEEEEEEEecCCC
Q 019613          109 QEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTP-LSGQIGTYTKGEAKSSTVEGSLKYKNGFG  187 (338)
Q Consensus       109 ~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~~~-~~~~~G~yst~~~~g~~~~~~~~~~Nl~G  187 (338)
                      .++|+++   +++|.++|||++|.+.+...+ ..++.++|.|.|+|++++ +.+++| |+++  .|+++.++|+++|+||
T Consensus       379 ~~~l~~~---~~~L~~~g~F~~V~~~~~~~~-~~~~~v~l~v~v~e~~~~~~~~g~g-y~s~--~g~~~~~~~~~~N~~G  451 (803)
T PRK11067        379 SDLVEQG---KERLNRLGFFETVDVDTQRVP-GSPDQVDVVYKVKERNTGSFNFGVG-YGTE--SGVSFQAGVQQDNWLG  451 (803)
T ss_pred             HHHHHHH---HHHHHhcCCcccCccccccCC-CCCCeEEEEEEEEEccCCcEEEEee-ecCc--CCEEEEEEEEecccCC
Confidence            9999998   999999999999999987542 345689999999999877 777888 9998  8999999999999999


Q ss_pred             CceeEEEEEEeecccceEEEEEEeccccCCCCCCeeEEEEEEeeccc--cccCceEEEEeeEEEec----CceeEEEEEE
Q 019613          188 YGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWL--KFSSYKEQSLGLSLGLF----SIRHHDLVYN  261 (338)
Q Consensus       188 ~G~~l~~~~~~s~~~~~~~~~~y~~P~~~~~~~~~~~~~~~~~~d~~--~~~~y~~~~~g~~~~l~----~~~~~~l~~~  261 (338)
                      .|+++++.+..+.. .+.+.++|..|++...++.+.+++++...+..  ...+|+.++.++++.++    ..+.+.+++.
T Consensus       452 ~G~~l~l~~~~s~~-~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~l~~~~~~~~g~~  530 (803)
T PRK11067        452 TGNSVGINGTKNDY-QTYAELSVTDPYFTVDGVSLGGRIFYNDFEADDADLSDYTNKSYGTDVTLGFPINENNSLRAGLG  530 (803)
T ss_pred             cCcEEEEEEEeccc-eEEEEEEEeCCcCcCCCceEEEEEEEEeccccccccccceeeEEEEEEEEEEEecCceEEEEEEE
Confidence            99999999999987 78899999999988777777777766543211  13467777777777664    3456666666


Q ss_pred             EEEEEecCCCCCCc-HHHHHHh-----------CCCeeeeEEEEEEEecCCCCCCCCCceeeEEEEeeeecCCCccCceE
Q 019613          262 LAWRTLTDPSHMSS-NTVRRQL-----------GHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRF  329 (338)
Q Consensus       262 ~~~~~~~~~~~~~s-~~i~~~~-----------~~~~~~~~~~~~~~d~rD~~~~Pt~G~~~~~~~e~aglgsd~~~~~f  329 (338)
                      +.+.++........ .......           ......+++++|++|++|++++|++|+++.++++.+.++++.+   |
T Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~~~~Pt~G~~~~~~~~~~~~gs~~~---f  607 (803)
T PRK11067        531 YVHNSLSNMQPQVAMWRYLYSMGENPSSDSDNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNE---Y  607 (803)
T ss_pred             EEEEEeecCCcchhHHHHHHHcCCccccccccccceEEEEEEEEEEEecCcCCCCCCCCeeEEEEEEEEeecccce---E
Confidence            66665543211100 0001111           1134568999999999999999999999999998888888866   9


Q ss_pred             EeeEeEEe
Q 019613          330 LRQFFCLL  337 (338)
Q Consensus       330 ~k~~~~~~  337 (338)
                      .|..++++
T Consensus       608 ~k~~~~~~  615 (803)
T PRK11067        608 YKVTLDTA  615 (803)
T ss_pred             EEEEEEEE
Confidence            99998875

>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein

Probab=99.97  E-value=9.3e-29  Score=256.22  Aligned_cols=283  Identities=20%  Similarity=0.225  Sum_probs=228.9

Q ss_pred             ccccccccCccCCCccchhHHHHHHhhhc---------------CCCCCeEEEEEEEECCCccCHHHHHHHhhhhccCcc
Q 019613           43 LEEDDDAAQPQRKSRVDRPKIENLFRRIR---------------NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATT  107 (338)
Q Consensus        43 ~~~ye~~k~~~~~~a~~~gy~~a~~~~~~---------------~~g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y  107 (338)
                      .+..++++..|.+...++||..+......               ++|++++|++|.|.|+.++++.+|++++++++|++|
T Consensus       273 ~~~~~~~~~~l~~~y~~~Gy~~~~v~~~~~~~~~~~~v~v~~~v~eg~~~~i~~i~i~g~~~t~~~~i~~~~~~~~G~~~  352 (741)
T TIGR03303       273 RSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVDPGKRVYVRRINISGNTRTRDEVIRRELRQLEGDWY  352 (741)
T ss_pred             HHHHHHHHHHHHHHHHhcCCceeEEEecceECCCCCEEEEEEEEccCCeEEEEEEEEECCCccccceeehhhccCccccc
Confidence            34455677777777788888766543211               678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEccCc-eeeeeeEEecCCCcceEEEEEEEEecCC
Q 019613          108 MQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTP-LSGQIGTYTKGEAKSSTVEGSLKYKNGF  186 (338)
Q Consensus       108 ~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~~~-~~~~~G~yst~~~~g~~~~~~~~~~Nl~  186 (338)
                      +.+.|+++   +++|.++|+|+.|.+.+.+.  ..++.++|.|.|+|++++ +.+++| |+++  .++++.++|+++|+|
T Consensus       353 ~~~~l~~~---~~~L~~lg~f~~v~~~~~~~--~~~~~~~v~i~v~e~~~~~~~~~~g-~~~~--~~~~~~~~~~~~Nl~  424 (741)
T TIGR03303       353 SLSKIKRS---KRRLERLGYFETVNIETVPV--GSPDQVDLNVKVKEQPTGSISFGVG-YGSS--SGLSFNASISERNFL  424 (741)
T ss_pred             CHHHHHHH---HHHHHhCCCCceeeeeecCC--CCCCEEEEEEEEEEccccEEEEeee-ecCC--CceEEEEEEEEeccc
Confidence            99999998   99999999999999998753  457789999999999866 777777 9886  889999999999999


Q ss_pred             CCceeEEEEEEeecccceEEEEEEeccccCCCCCCeeEEEEEEeeccc--cccCceEEEEeeEEEec----CceeEEEEE
Q 019613          187 GYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWL--KFSSYKEQSLGLSLGLF----SIRHHDLVY  260 (338)
Q Consensus       187 G~G~~l~~~~~~s~~~~~~~~~~y~~P~~~~~~~~~~~~~~~~~~d~~--~~~~y~~~~~g~~~~l~----~~~~~~l~~  260 (338)
                      |.|+.+++.+.++.. .+.+.++|..|++...++.+.+++++...+..  ....|...+.++++.++    ..+.+.+++
T Consensus       425 G~g~~l~~~~~~~~~-~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~  503 (741)
T TIGR03303       425 GTGNRLSLSANKSSL-STSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKNFSDYKTKTYGGSINLGYPITEYLRVSLGY  503 (741)
T ss_pred             ccccEEEEEEEeccc-eEEEEEEEECCCCcCCCeEEEEEEEEEEcccccccccCceeEEEEEEEEEEEEecCceEEEEEE
Confidence            999999999999998 78899999999998888888888877655321  13557777766666553    456777777


Q ss_pred             EEEEEEecCCCCC---CcHHHHHHhCCCeeeeEEEEEEEecCCCCCCCCCceeeEEEEeeeecCCCccCceEEeeEeEEe
Q 019613          261 NLAWRTLTDPSHM---SSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQFFCLL  337 (338)
Q Consensus       261 ~~~~~~~~~~~~~---~s~~i~~~~~~~~~~~~~~~~~~d~rD~~~~Pt~G~~~~~~~e~aglgsd~~~~~f~k~~~~~~  337 (338)
                      .+.+.++......   ....+..+.+.....+++++++||++|++++|++|+++++.+++++++++.+   |.|..++++
T Consensus       504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rD~~~~P~~G~~~~~~~~~~~~g~~~~---f~k~~~~~~  580 (741)
T TIGR03303       504 GYEQNKIKNSSDSDSSASYFIKEQGGKFIDSSLSYGWSYDTLDSGYFPTKGSIQRLSQEFAGPGGDLK---YYKLTYDSE  580 (741)
T ss_pred             EEEEEEEecCCCcchhHHHHHHHhCCceEEEEEEEEEEEeCCcCCCCCCCCcEEEEEEEEeeecCCce---EEEEEEEEE
Confidence            7777766532211   1112333456678899999999999999999999999999999988887765   999988875

Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.

>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane]

Probab=99.96  E-value=6.2e-29  Score=246.57  Aligned_cols=265  Identities=17%  Similarity=0.162  Sum_probs=203.4

Q ss_pred             ccCCCCccccccccCccCCCccchhHHHHHHhhhc----------------CCCCCeEEEEEEEECCCccCHHHHHHHhh
Q 019613           37 EEDDDDLEEDDDAAQPQRKSRVDRPKIENLFRRIR----------------NGPVPLRVHDVIVKGNTKTKDCLIEAELD  100 (338)
Q Consensus        37 ~~~~~~~~~ye~~k~~~~~~a~~~gy~~a~~~~~~----------------~~g~~~~~g~V~i~G~~~t~~~~I~r~l~  100 (338)
                      ..+...-.-|+.+|..+.+.+.++||++|.|+..+                ++|++|.+|.|.|+|..++++.+|+++++
T Consensus       144 ~G~~~~~~~~~n~k~~i~~~~~~~gy~~a~~~~~r~~v~~~~~~a~~~~~~dsG~~y~~g~v~~~g~~r~~~~~~~~~~~  223 (594)
T COG0729         144 EGEDLNQGTYENAKSSIVRALLRKGYFLARFTKSRLVVDPATHTADVDLNYDSGRRYRFGPVTVEGSQRIDEEYLQNLVP  223 (594)
T ss_pred             cCCccccchhhhhHHHHHHHHHHcCcchhcccccccccccccceEEEEEeecccceEEeCcEEEccceecCHHHHhhccc
Confidence            34445667899999999999999999999998888                99999999999999988899999999999


Q ss_pred             hhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCC-CeeEEEEEEEEccCc-eeeeeeEEecCCCcceEEEE
Q 019613          101 AIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELP-GTSNVIIQVVETKTP-LSGQIGTYTKGEAKSSTVEG  178 (338)
Q Consensus       101 ~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~-~~v~V~v~v~E~~~~-~~~~~G~yst~~~~g~~~~~  178 (338)
                      +++|++|+++.|.++   +++|.++++|++|.|.+... +..+ ..+||.|.|.|++.+ +.+|+| |+|+  .|+++++
T Consensus       224 ~~~G~~Y~~~~l~~~---~~rl~~~~~F~sv~v~~~~~-~~~~~~~~pv~v~~~~rk~~~~~lG~g-yst~--~G~~~~~  296 (594)
T COG0729         224 FKYGLPYDPEDLAEL---NQRLRQTGYFSSVVVQPADK-QAGPDGLLPVKVSVSERKENTFELGVG-YSTD--VGAGLEA  296 (594)
T ss_pred             cCCCCcCCHHHHHHH---HHHHhhcCceeeEEEecCcc-ccCcCceeceEEEecccccceEEeeeE-Eecc--ccccceE
Confidence            999999999999998   99999999999999999864 2333 358999999999987 788888 9998  9999999


Q ss_pred             EEEEecCCCCceeEEEEEEeecccceEEEEEEeccccCCC-CCCeeEEEEEEeeccccccCceEEEEe--eEE--Eec--
Q 019613          179 SLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGL-VTPMTARVFLQSQDWLKFSSYKEQSLG--LSL--GLF--  251 (338)
Q Consensus       179 ~~~~~Nl~G~G~~l~~~~~~s~~~~~~~~~~y~~P~~~~~-~~~~~~~~~~~~~d~~~~~~y~~~~~g--~~~--~l~--  251 (338)
                      .|.++|+|++||++.+++.++.. .+.+.+.|.+|++..+ .....+..++...+-...   .....+  +++  ++.  
T Consensus       297 ~w~~~~~~~~~~~l~~~~~is~~-~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~t---~~~~~~~~l~~~~~~~~~  372 (594)
T COG0729         297 GWEKRNLFGRGHSLRIESEISAP-LQTLEATYKAPLLFNPLGQYNPVSAGFDRLDLYDT---ESDAYTESLSASRGWDAS  372 (594)
T ss_pred             EeeeecccCcceeEeeeeeeccc-hhcCceEEEeecccCCccceeccccccccchhhcc---ccccccceeeeeehhccc
Confidence            99999999999999999999999 7889999999998876 355555555544331111   111111  222  111  


Q ss_pred             CceeEEE--EEEEEEEEecCCCCCCcHHHHHHhCCCeeee--EEEEEEEecCCCCCCCCCceeeEEEEeee--ecCCCc
Q 019613          252 SIRHHDL--VYNLAWRTLTDPSHMSSNTVRRQLGHDFLSS--LKYTFKFDKRNSPLRPTRGYAFVSTTQIG--GLAPDS  324 (338)
Q Consensus       252 ~~~~~~l--~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~--~~~~~~~d~rD~~~~Pt~G~~~~~~~e~a--glgsd~  324 (338)
                      ..|...+  +|.+.+...           ....++..+..  +.+++++|+ |+.++|++|+++.+.+..+  .++|+.
T Consensus       373 ~~~~~~~~~r~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~-dd~~~Pt~G~~~~~~~~~s~~~~~s~~  439 (594)
T COG0729         373 LGWQRSLALRFSYDNFRQ-----------GDISGKTSLLTPGVEFSYTRDT-DDGLFPTWGDRLDLTIGPSYEALGSDV  439 (594)
T ss_pred             cCceeEEEEEEEcccccc-----------ccccCCceEEecceEEEEEEcc-CCCCCCCccceeeeeeeeccccccCch
Confidence            1223322  222222111           11123333454  455555555 9999999999999999876  577765

>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family

Probab=99.94  E-value=2.5e-25  Score=227.63  Aligned_cols=280  Identities=15%  Similarity=0.045  Sum_probs=193.2

Q ss_pred             ccCccCCCccchhHHHHHHhhh--c---------CCCC--CeEEEEEEEECCC---ccCHHHHHHHhh--hhccCccHHH
Q 019613           49 AAQPQRKSRVDRPKIENLFRRI--R---------NGPV--PLRVHDVIVKGNT---KTKDCLIEAELD--AIRNATTMQE  110 (338)
Q Consensus        49 ~k~~~~~~a~~~gy~~a~~~~~--~---------~~g~--~~~~g~V~i~G~~---~t~~~~I~r~l~--~~~G~~y~~~  110 (338)
                      ....|++.-.++||.-|.....  .         .+|+  .++|..|.+.|+.   +|++.+|+|+++  +++|++|+..
T Consensus       228 ~~~~I~~~Y~~~GY~~A~V~~~~~~~~~~V~l~V~EG~i~~I~V~~i~~~Gn~~~G~T~~~vI~Rel~~~lk~G~~fn~~  307 (718)
T TIGR00992       228 IRDRVQEWYHNEGYACAQVVNFGNLNTDEVVCEVVEGDITNLQIQFFDKLGNVVEGNTRDPVVTRELPKQLKPGDVFNIE  307 (718)
T ss_pred             HHHHHHHHHHHCCceeEEEeccCcCCCCEEEEEEeccceeEEEEEEecccCccccCccchHHHHHHHHhccCCCCcCCHH
Confidence            3455555666777765433211  1         2233  3333333334654   799999999999  9999999999


Q ss_pred             HHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEccCc-e------eeeee---E-EecCCCcceEEEEE
Q 019613          111 IIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTP-L------SGQIG---T-YTKGEAKSSTVEGS  179 (338)
Q Consensus       111 ~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~~~-~------~~~~G---~-yst~~~~g~~~~~~  179 (338)
                      +|+++   +++|+++++|++|.|.+.+. ...++.++|.|.|+|++++ .      ++.+|   . |+++  .|+++.++
T Consensus       308 ~Le~~---~~rL~~lg~F~~V~V~~~p~-~~~~g~v~V~V~V~E~~~~s~~~~~~~s~~~G~Gg~~~ss~--~G~~g~i~  381 (718)
T TIGR00992       308 AGKTA---LQNINSLGLFSNIEVNPRPD-EMNEGEIIVEIKLKELEQKSAEVSTEWSIVPGRGGRPTLAS--SQPGGTIT  381 (718)
T ss_pred             HHHHH---HHHHHcCCCcccceeeccCC-CCCCCeEEEEEEEEECCCCceeeeccccccccCCCcccccc--cceeEEee
Confidence            99998   99999999999999999864 2367899999999999864 2      22222   1 4555  79999999


Q ss_pred             EEEecCCCCceeEEEEEEee-----cccceEEEEEEeccccCCC----CCCeeEEEEEEeeccc---------cccCceE
Q 019613          180 LKYKNGFGYGDLWDASLAYG-----FDRSAEVSAGVYLPRFKGL----VTPMTARVFLQSQDWL---------KFSSYKE  241 (338)
Q Consensus       180 ~~~~Nl~G~G~~l~~~~~~s-----~~~~~~~~~~y~~P~~~~~----~~~~~~~~~~~~~d~~---------~~~~y~~  241 (338)
                      |.++|+||.||++.+++.++     .. .+.+.++|++||+...    +.++.+++++.+....         .+.+|..
T Consensus       382 ~~~rNl~G~g~~l~~~~~~s~~~~~~~-~~~~~lsy~~P~i~~~~~p~~~s~~~~~f~~~~~~~~~~~~~~~~~~~~y~~  460 (718)
T TIGR00992       382 FEHRNLQGLNRSLGGSVTTSNFLNPQD-DLLFKVEYTHPYLDGVDNPRNRTYTASCFNSRKLSPVFTGGPGVNEVPSIWV  460 (718)
T ss_pred             EEeccCcccCcEEEEEEEeccccCCCc-ceEEEEEEecCccCCCCCCccceEEEEEEEeccccccccCCcccccCCCceE
Confidence            99999999999999999998     66 7899999999998765    6678888866543211         1245777


Q ss_pred             EEEeeEEEecC----ceeEEEEE------EEEEEEecCCCCCC---cHHH--------HHHhCCCeeeeEEEEEEEecCC
Q 019613          242 QSLGLSLGLFS----IRHHDLVY------NLAWRTLTDPSHMS---SNTV--------RRQLGHDFLSSLKYTFKFDKRN  300 (338)
Q Consensus       242 ~~~g~~~~l~~----~~~~~l~~------~~~~~~~~~~~~~~---s~~i--------~~~~~~~~~~~~~~~~~~d~rD  300 (338)
                      .+.|+++.++.    .+....+|      .+....+.+.....   +..+        ....+...++++.++++||++|
T Consensus       461 ~r~G~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~t~s~~~~~~l~~l~~~~t~D~rD  540 (718)
T TIGR00992       461 DRAGVKANITENFARQSKFTYGLVMEEIFTRDESRHINANGQRSLPSGPISADGPPTTLSGTGVDRMAFLQANITRDNTN  540 (718)
T ss_pred             EEEEEEEEEeeccCcccccccCeEEEEEeeeeeeeeccccCccccccccccccCCcceecCCCccceEEEEEEEEEecCC
Confidence            88888776642    22222222      11111111110000   0000        0012334678999999999999


Q ss_pred             CCCCCCCceeeEEEEeeee-cCCCccCceEEeeEeEEe
Q 019613          301 SPLRPTRGYAFVSTTQIGG-LAPDSRCLRFLRQFFCLL  337 (338)
Q Consensus       301 ~~~~Pt~G~~~~~~~e~ag-lgsd~~~~~f~k~~~~~~  337 (338)
                      ++++|++|+++.++++.+. ++++.  ..|.|+.++++
T Consensus       541 n~l~Pt~G~~~~~~~e~~~~~g~~~--~~f~r~~~~~~  576 (718)
T TIGR00992       541 FVNGPTVGSRVRFQVDQGLGVGSGF--PFFNRHQLTYT  576 (718)
T ss_pred             CCCCCCcccEEEEEEEeccCcCCCC--ceEEEEEEEEE
Confidence            9999999999999999884 67764  23888888764

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein.

>PLN03138 Protein TOC75; Provisional

Probab=99.88  E-value=6e-22  Score=199.32  Aligned_cols=281  Identities=15%  Similarity=0.073  Sum_probs=185.2

Q ss_pred             cccccCccCCCccchhHHHHHHhhhc-----------CCCCCeEEE-----EE--EEECCCccCHHHHHHHhh--hhccC
Q 019613           46 DDDAAQPQRKSRVDRPKIENLFRRIR-----------NGPVPLRVH-----DV--IVKGNTKTKDCLIEAELD--AIRNA  105 (338)
Q Consensus        46 ye~~k~~~~~~a~~~gy~~a~~~~~~-----------~~g~~~~~g-----~V--~i~G~~~t~~~~I~r~l~--~~~G~  105 (338)
                      -++....|+..-.++||+.+...-..           .+|...+|.     +|  .|+|+  |+|.+|+|+|+  +++|+
T Consensus       303 Lq~die~I~~~Y~d~GYafa~V~~~~~id~g~Vtl~V~EG~i~~I~V~~~drig~~i~GN--TrD~VIRREL~~~lkeGd  380 (796)
T PLN03138        303 LQRIRDRVQKWYHDEGYACAQVVNFGNLNTNEVVCEVVEGDITKVVIQFQDKLGNVVEGN--TQLPIIDRELPKQLRQGH  380 (796)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEecccccCCceEEEEEecccEEEEEEEecccccccccCC--ccCeEEeeecccccCCCc
Confidence            33455666677778888766544332           334444444     44  45564  58999999997  48999


Q ss_pred             ccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEccCc---eeeeeeEEecC-------CCcceE
Q 019613          106 TTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTP---LSGQIGTYTKG-------EAKSST  175 (338)
Q Consensus       106 ~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~~~---~~~~~G~yst~-------~~~g~~  175 (338)
                      +|+...|+++   .++|+++|||++|.|.+.+. ...++.|+|+|.|+|..+.   ++++.| |+..       ...++.
T Consensus       381 ~fN~~~l~~s---lqRL~~LGlFedV~V~~~Pg-~~~p~~VdL~V~VkE~e~~t~~ls~g~g-~~~G~g~~Psl~S~g~~  455 (796)
T PLN03138        381 IFNIEAGKQA---LRNINSLALFSNIEVNPRPD-EKNEGGIVVEIKLKELEPKSAEVSTEWS-IVPGRGGRPTLASIQPG  455 (796)
T ss_pred             ccCHHHHHHH---HHHHHhCCCCceeEEEeccC-CCCCCeEEEEEEEEEccCCceeEecccc-cccccCCCCccccccce
Confidence            9999999998   99999999999999999854 2357899999999994433   333333 3221       125667


Q ss_pred             EEEEEEEecCCCCceeEEEEEEee-----cccceEEEEEEeccccCC--CC--CCeeEEEEEEeeccc------cccCce
Q 019613          176 VEGSLKYKNGFGYGDLWDASLAYG-----FDRSAEVSAGVYLPRFKG--LV--TPMTARVFLQSQDWL------KFSSYK  240 (338)
Q Consensus       176 ~~~~~~~~Nl~G~G~~l~~~~~~s-----~~~~~~~~~~y~~P~~~~--~~--~~~~~~~~~~~~d~~------~~~~y~  240 (338)
                      +.++++++||+|+|+++.++++++     .. ...+.++|+.||+..  .+  .++.++++..+....      ....+.
T Consensus       456 Gtvs~~~~NL~G~g~~L~~~v~~s~~~~g~~-d~~f~lsytdPWi~g~~d~~rts~~~~~f~~r~~s~vf~~~~~~~~~~  534 (796)
T PLN03138        456 GTVSFEHRNIQGLNRSILGSVTSSNLLNPQD-DLSFKLEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGGPGVDEVP  534 (796)
T ss_pred             eEEEEeccccccccceEEEEEEeecccCCcc-ceEEEEEeecccccCCCCcccccEEEEEEecCcCCceeeCCCCcccCC
Confidence            889999999999999999999985     34 678999999999966  22  667777766542210      011122


Q ss_pred             ---EEEEeeEEEecC----ceeEEEEEEEEEEEecCCCCCCc-----------------HHHHHHhCCCeeeeEEEEEEE
Q 019613          241 ---EQSLGLSLGLFS----IRHHDLVYNLAWRTLTDPSHMSS-----------------NTVRRQLGHDFLSSLKYTFKF  296 (338)
Q Consensus       241 ---~~~~g~~~~l~~----~~~~~l~~~~~~~~~~~~~~~~s-----------------~~i~~~~~~~~~~~~~~~~~~  296 (338)
                         ..+.|+.+.+.+    .+.+.+++.+....+.+......                 +......+.-.+..+.+.++|
T Consensus       535 ~~~~~R~G~~~~~~rp~~~~~~~s~g~~~q~v~~~d~~g~~~~~~~~~~~~~~~~~~g~plT~S~~g~D~l~~~~~~~tr  614 (796)
T PLN03138        535 PIWVDRAGFKANITENFTRQSKFTYGLVVEEITTRDETSHICTHGQRVLPSGGLSADGPPTTLSGTGIDRMAFLQANITR  614 (796)
T ss_pred             cceEeecccceEeecccCCCCceEEEEEEEEEEeecCCCCccccccccccccccccCCCceeeccCCcchhhheeeeeEe
Confidence               455666666642    11233333333322222111100                 000111233456678899999


Q ss_pred             ecCCCCCCCCCceeeEEEEeee-ecCCCccCceEEeeEeEE
Q 019613          297 DKRNSPLRPTRGYAFVSTTQIG-GLAPDSRCLRFLRQFFCL  336 (338)
Q Consensus       297 d~rD~~~~Pt~G~~~~~~~e~a-glgsd~~~~~f~k~~~~~  336 (338)
                      |++|++..|++|.++.+.+|.+ +++++.  ..|=|+.+.+
T Consensus       615 d~~~~~~~pt~G~~~~~~~EQ~lpvg~~~--~~fNR~~~~~  653 (796)
T PLN03138        615 DNTKFVNGAVVGDRHIFQVDQGLGIGSKF--PFFNRHQLTV  653 (796)
T ss_pred             ccCCCCCCCCccceEEEEeeeeccccCCC--CceEEEEEEE
Confidence            9999999999999999999987 555542  3355555544

>PF01103 Bac_surface_Ag: Surface antigen; InterPro: IPR000184 The protein sequences of d15 from various strains of Haemophilus influenzae are highly conserved, with only a small variable region identified near the carboxyl terminus of the protein []

Probab=99.37  E-value=3.9e-11  Score=111.80  Aligned_cols=150  Identities=29%  Similarity=0.385  Sum_probs=113.2

Q ss_pred             cCCCCceeEEEEEEeecccceEEEEEEeccccCCCCCCeeEEEEEEeeccccccCceEEEEeeEEEec----CceeEEEE
Q 019613          184 NGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGLF----SIRHHDLV  259 (338)
Q Consensus       184 Nl~G~G~~l~~~~~~s~~~~~~~~~~y~~P~~~~~~~~~~~~~~~~~~d~~~~~~y~~~~~g~~~~l~----~~~~~~l~  259 (338)
                      |+||.|+++++.+.++.. .+.+.++|..|++...++.+.+++++.+.+......|..+..++++.+.    ..+.+.++
T Consensus         1 N~~G~g~~~~~~~~~~~~-~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   79 (323)
T PF01103_consen    1 NLFGTGQSLSVSATYGSD-SQSLSLSYTNPYFFGDRLSLGFSLYYSSSDSDEFSSYDEQTFGFSLSLGYRISPNWSLSLG   79 (323)
T ss_pred             CCCCCCeEEEEEEEEcCc-eEEEEEEEEEcCCCCCCEEEEEEEEEEEccccccccceeeeccccccceeEcccceEEEEE
Confidence            899999999999999886 8999999999998887888888887764332234567777766666553    34556666


Q ss_pred             EEEEEEEecCCCCCCcHH----HHHHhCCCeeeeEEEEEEEecCCCCCCCCCceeeEEEEeeee--cCCCccCceEEeeE
Q 019613          260 YNLAWRTLTDPSHMSSNT----VRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGG--LAPDSRCLRFLRQF  333 (338)
Q Consensus       260 ~~~~~~~~~~~~~~~s~~----i~~~~~~~~~~~~~~~~~~d~rD~~~~Pt~G~~~~~~~e~ag--lgsd~~~~~f~k~~  333 (338)
                      +.+.+.++..........    .....++....++.++++||++|+.++|++|+++.+..+.+.  ++++.+   |.|.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~p~~G~~~~~~~~~~~~~~~~~~~---f~k~~  156 (323)
T PF01103_consen   80 YSYSRNDFSTSSGSPFSDSVSSSDLQDGKSNISSLGLSLSYDTRDNSFFPTKGWYLSFSLEFSGKFLGSDSN---FYKFE  156 (323)
T ss_pred             EEEEEEEEEcCCCcccccccccccccCCceEEEEEEEEEEEecCCCccCCccceEEEEEEEEecccCCCcce---EEEEE
Confidence            666666654432211000    122356778899999999999999999999999999999886  777765   99999


Q ss_pred             eEEe
Q 019613          334 FCLL  337 (338)
Q Consensus       334 ~~~~  337 (338)
                      ++++
T Consensus       157 ~~~~  160 (323)
T PF01103_consen  157 LSAR  160 (323)
T ss_pred             EEEE
Confidence            8875

D15 is a highly conserved antigen that is protective in animal models and it may be a useful component of a universal subunit vaccine against Haemophilus infection and disease []. Membrane proteins from other bacteria have been shown to elicit protective immunity. Oma87 is a protective outer membrane antigen of Pasteurella multocida [].; GO: 0019867 outer membrane

>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus

Probab=98.97  E-value=1.9e-09  Score=79.42  Aligned_cols=72  Identities=22%  Similarity=0.279  Sum_probs=64.0

Q ss_pred             eEEEEEEEECC-CccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhh----cCCC-cceeeEEEcCCCCCCCCeeEEEE
Q 019613           77 LRVHDVIVKGN-TKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLR----ELEC-FDSVEITLDSGPPELPGTSNVII  150 (338)
Q Consensus        77 ~~~g~V~i~G~-~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~----~~g~-F~~V~v~~~~~~~~~~~~v~V~v  150 (338)
                      |+|++|.|.|+ ..++++.|++.+.+++|++|++..+.+.   .++|.    ++|| |..|.+.+...    ++.|+|.+
T Consensus         1 ~~i~~I~i~Gn~~~~~~~~l~~~l~~~~G~~~~~~~i~~~---~~~l~~~y~~~Gy~~~~V~~~~~~~----~~~v~l~~   73 (78)
T PF07244_consen    1 YRIGEINIEGNLKKFSDEELRRELGLKPGDPFNPEKIEED---IERLQDYYKDKGYFFAKVSPEIDPD----DNTVDLTF   73 (78)
T ss_dssp             CEEEEEEEESE-SSSHHHHHHHCHSS-TTSBECHHHHHHH---HHHHHHHHHTTSCSEEEEEEEEEEE----TTEEEEEE
T ss_pred             CEEEEEEEEcCceEeCHHHHHhhcCCCCCCEeCHHHHHHH---HHHHHHHHHHcCCcceEEEEEEEEc----CCEEEEEE
Confidence            57999999997 8999999999999999999999999998   99999    9999 88898888743    37899999


Q ss_pred             EEEEc
Q 019613          151 QVVET  155 (338)
Q Consensus       151 ~v~E~  155 (338)
                      .|+|.
T Consensus        74 ~V~Eg   78 (78)
T PF07244_consen   74 NVDEG   78 (78)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99984

The C terminus of these proteins is normally represented by IPR000184 from INTERPRO. There may also be a relationship to haemolysin activator HlyB (IPR005565 from INTERPRO). The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.; GO: 0019867 outer membrane; PDB: 2X8X_X 3MC8_A 3OG5_A 3MC9_B 2QCZ_B 3EFC_A 3Q6B_A 2QDF_A 2V9H_A.

>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion]

Probab=98.82  E-value=4.3e-07  Score=91.02  Aligned_cols=132  Identities=20%  Similarity=0.275  Sum_probs=111.0

Q ss_pred             EEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEccC
Q 019613           78 RVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKT  157 (338)
Q Consensus        78 ~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~~  157 (338)
                      +|++|.|.|....++..++..+|..+|++.+...|++.   ...|..+.--+ |.+.+.++  ..++.-+|+|++++.+ 
T Consensus       149 ~i~~i~i~g~~~~~~~~~~~~~p~~~g~~Ln~~~lEq~---l~~l~~~P~~q-a~~~l~pg--~~~G~S~l~i~~~~~~-  221 (554)
T COG2831         149 RIEDIRITGDSDLRSVALRSLFPAHRGDPLNLRDLEQG---LELLNRLPGVQ-ADAELVPG--SEPGESDLVIKVQQGK-  221 (554)
T ss_pred             EeeeEEEcCCCccchhhHHhhccccCCCCCCHHHHHHH---HHHhhhCcccc-ceeEEccC--CCCCccEEEEEeeeCC-
Confidence            57899999998888899999999999999999999997   88888887776 77777754  6788899999999975 


Q ss_pred             ceeeeeeE--EecCCCcceEEEEEEEEecCCCCceeEEEEEEeecccc--eEEEEEEeccccC
Q 019613          158 PLSGQIGT--YTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRS--AEVSAGVYLPRFK  216 (338)
Q Consensus       158 ~~~~~~G~--yst~~~~g~~~~~~~~~~Nl~G~G~~l~~~~~~s~~~~--~~~~~~y~~P~~~  216 (338)
                      ++.+.+++  |++.....+++.+++...|++|.|+.+++++..+....  ..+++.|..|+-.
T Consensus       222 ~~~~~~~~DN~G~~~tG~~r~~~~l~~dn~lglgD~l~~~~~~~~~~~~~~~~~~~Ys~P~g~  284 (554)
T COG2831         222 PWRVSASADNYGSKSTGRYRLGVGLSLDNPLGLGDQLSLSYSRSLDGQTTNNYSLSYSVPLGY  284 (554)
T ss_pred             CeEEEEEecCCCCcCccceeeEeEEEecCCCcchhheeehhcccCCCcccceEEEEEEEEEcc
Confidence            45788886  66554456789999999999999999999999866523  3799999999964

>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein

Probab=98.31  E-value=1.7e-05  Score=82.65  Aligned_cols=112  Identities=8%  Similarity=0.049  Sum_probs=87.3

Q ss_pred             CccccccccCccCCCccchhHHHHHHhhhc----------------CCCCCeEEEEEEEECCCccCHHHHHHHhhhhccC
Q 019613           42 DLEEDDDAAQPQRKSRVDRPKIENLFRRIR----------------NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNA  105 (338)
Q Consensus        42 ~~~~ye~~k~~~~~~a~~~gy~~a~~~~~~----------------~~g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~  105 (338)
                      +.+..++.+..|.+.-.++||+++......                ++|++++|++|.|.|+..+++..|++.+++++|+
T Consensus       190 ~~~~l~~~~~~i~~~y~~~Gy~~a~v~~~~~~~~~~~~~~~i~~~v~eG~~~~i~~i~i~g~~~~~~~~l~~~~~~~~G~  269 (741)
T TIGR03303       190 SKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEGEQYKFGEVTIEGDLIGPDEELKKLLKIKKGE  269 (741)
T ss_pred             CHHHHhhhHHHHHHHHHhCCcEEEEEcCCEEEECCCCCEEEEEEEeccCCCEEEEeEEEEeccCCcHHHHHHhhcCCCCC
Confidence            345567778888888889999988654211                7899999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhhhc----CCCcceeeEEEcCCCCCCCCeeEEEEEEEEccC
Q 019613          106 TTMQEIIQAANIINYKLRE----LECFDSVEITLDSGPPELPGTSNVIIQVVETKT  157 (338)
Q Consensus       106 ~y~~~~l~~~~~~~~~L~~----~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~~  157 (338)
                      +|+.+.+.++   .++|.+    .||+ .+.|.+...+....+.++|.+.|.|.++
T Consensus       270 ~~~~~~~~~~---~~~l~~~y~~~Gy~-~~~v~~~~~~~~~~~~v~v~~~v~eg~~  321 (741)
T TIGR03303       270 VFNRSKVTKI---VKAIKDLLGEKGYA-FANVNPRPQINDENKTVDLTFKVDPGKR  321 (741)
T ss_pred             eeCHHHHHHH---HHHHHHHHHhcCCc-eeEEEecceECCCCCEEEEEEEEccCCe
Confidence            9999999987   554443    6764 4556554322223457999999999974

Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.

>PF03865 ShlB: Haemolysin secretion/activation protein ShlB/FhaC/HecB; InterPro: IPR005565 Haemolysin (HlyA) and related toxins are secreted across both the cytoplasmic and outer membranes of Gram-negative bacteria in a process which proceeds without a periplasmic intermediate

Probab=98.28  E-value=0.00027  Score=68.58  Aligned_cols=111  Identities=21%  Similarity=0.246  Sum_probs=74.0

Q ss_pred             HhhhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEccCceeeeeeE--EecCCCcceE
Q 019613           98 ELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGT--YTKGEAKSST  175 (338)
Q Consensus        98 ~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~~~~~~~~G~--yst~~~~g~~  175 (338)
                      .+|.++|++.+-..|++.   ..+|.++.-- .|.+.+.|+  ..++.-+|+|.+++.+ ++.+.+++  +++..+...+
T Consensus        10 ~fP~~~G~~LnlrdlEQg---le~lnrl~~~-~~~~~i~PG--~~~G~S~i~i~~~~~~-~~~~~~~~DN~Gs~~TG~~q   82 (404)
T PF03865_consen   10 AFPNRKGKPLNLRDLEQG---LEQLNRLPSN-QAKIDILPG--EEPGTSDIVIENQPSK-PWSGSLSLDNSGSKSTGRYQ   82 (404)
T ss_dssp             -STT-TT-B--HHHHHHH---HHHH-S-SSE-EEEEEEEE---SSTTEEEEEEEEEE-S-S-EEEEEEEE-SSS-SS-EE
T ss_pred             cCCCCCCCCCCHHHHHHH---HHHhccCCCC-cceEEEecC--CCCCEEEEEEEecccC-CEEEEEEEecCCccccceEE
Confidence            359999999999999987   7777776533 466666643  6788889999998875 46788886  6665445678


Q ss_pred             EEEEEEEecCCCCceeEEEEEEeeccc-----ceEEEEEEecccc
Q 019613          176 VEGSLKYKNGFGYGDLWDASLAYGFDR-----SAEVSAGVYLPRF  215 (338)
Q Consensus       176 ~~~~~~~~Nl~G~G~~l~~~~~~s~~~-----~~~~~~~y~~P~~  215 (338)
                      +.+++...|++|.++.|.+++..+...     .+.+.+.|.+|+-
T Consensus        83 ~~~~l~~dnplgl~D~lsls~~~~~~~~~~~~~~~~~~~YsvP~G  127 (404)
T PF03865_consen   83 GGATLSLDNPLGLNDQLSLSYSSSLDNPDSRYSRSYSLSYSVPYG  127 (404)
T ss_dssp             EEEEEEEE-SSSSS-EEEEEEEE--S--SS-EEEEEEEEEEEEET
T ss_pred             EEEEEEECCCccccceeEEEEeccccCcccCCceEEEEEEEeeee
Confidence            999999999999999999998765431     2467899999985

HlyA is directed by an uncleaved C-terminal targeting signal and the HlyD and HlyB translocator proteins [].; PDB: 2QDZ_A 3NJT_A.

>PRK11067 outer membrane protein assembly factor YaeT; Provisional

Probab=97.87  E-value=1.2e-05  Score=84.85  Aligned_cols=119  Identities=12%  Similarity=-0.000  Sum_probs=87.4

Q ss_pred             cccccccCccCCCccchhHHHHHHhhhc----------------CCCCCeEEEEEEEECCCccCHHHHHHHhhhhccCcc
Q 019613           44 EEDDDAAQPQRKSRVDRPKIENLFRRIR----------------NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATT  107 (338)
Q Consensus        44 ~~ye~~k~~~~~~a~~~gy~~a~~~~~~----------------~~g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y  107 (338)
                      +..++.+..|.+.-.++||+++......                ++|++++|++|.|.|+..+.+..|++.+++++|++|
T Consensus       217 ~~l~~d~~~l~~~Y~~~Gy~~a~V~~~~~~~~~~~~~v~i~~~I~eG~~~~i~~i~~~G~~~~~~~~l~~~~~~k~G~~~  296 (803)
T PRK11067        217 QKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELY  296 (803)
T ss_pred             HHHhhhHHHHHHHHHHCCCceEEecCcEEEEcCCCceEEEEEEEeeCCcEEEEEEEEEecCCCCHHHHHHhhcCCCCcee
Confidence            3344556788888889999998875322                789999999999999988899999999999999999


Q ss_pred             HHHHHHHHHHH-HHhhhcCCCcc-eeeEEEcCCCCCCCCeeEEEEEEEEccCceeeeee
Q 019613          108 MQEIIQAANII-NYKLRELECFD-SVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIG  164 (338)
Q Consensus       108 ~~~~l~~~~~~-~~~L~~~g~F~-~V~v~~~~~~~~~~~~v~V~v~v~E~~~~~~~~~G  164 (338)
                      +...+.+.... .+.+.+.||+. .|...+...  ...+.|+|.+.|.|.++..-..+-
T Consensus       297 ~~~~~~~~~~~i~~~~~~~GY~~a~v~~~~~~~--~~~~~v~i~~~v~eG~~y~ig~I~  353 (803)
T PRK11067        297 NGTKVTKMEDDIKKLLGRYGYAYPRVQTQPEIN--DADKTVKLHVNVDAGNRFYVRKIR  353 (803)
T ss_pred             CHHHHHHHHHHHHHHHHhCCCCcceeeeccccC--CCCCEEEEEEEEeeCCeEEEEEEE
Confidence            99887775222 34456789964 343333322  345689999999999743333344

>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]

Probab=97.46  E-value=0.00013  Score=75.80  Aligned_cols=116  Identities=12%  Similarity=0.082  Sum_probs=85.7

Q ss_pred             cccCccCCCccchhHHHHHHhhhc----------------CCCCCeEEEEEEEECCCccCHHHHHHHhhhhccCccHHHH
Q 019613           48 DAAQPQRKSRVDRPKIENLFRRIR----------------NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEI  111 (338)
Q Consensus        48 ~~k~~~~~~a~~~gy~~a~~~~~~----------------~~g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~  111 (338)
                      ..+..+++.-.++||+|+.+....                .+|++|+|++|.|+|+......-|++.++.++|++|+.+.
T Consensus       218 ~D~e~lr~~Y~n~Gy~d~~v~s~~~~~~~~k~~~~vt~~V~EG~~y~~~~i~i~g~~~~~~~el~~~~~~~~g~~fn~~~  297 (766)
T COG4775         218 ADLETLRSFYLNRGYADFRVSSTQVSLDPDKKGVTVTYTVKEGPQYKFGSVLIEGNLAGVSEELEKLLKVKPGKLFNRKK  297 (766)
T ss_pred             ccHHHHHHHHHhCceEEEEEeeeeecccCCCccEEEEEEEccCCceEEEEEEEEcCccCcHHHHHHhhccCCCceEcHHH
Confidence            445566666668888888776665                7899999999999999999999999999999999999999


Q ss_pred             HHHHH-HHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEccCceeeeee
Q 019613          112 IQAAN-IINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIG  164 (338)
Q Consensus       112 l~~~~-~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~~~~~~~~G  164 (338)
                      |.+.. .....+.+.||=- +.|.+.+.++.....+.|.+.|.+.++.+--.+.
T Consensus       298 i~~~~~~I~~~~~~~GY~~-a~V~p~~~~n~~~~tv~v~~~V~~g~~~~V~~i~  350 (766)
T COG4775         298 IEDDADKIKERYARYGYAF-ANVSPQPDANDENKTVDVVFRVDEGDRVYVRRIR  350 (766)
T ss_pred             HHHHHHHHHHHHHhcCcee-eEeeeecccCCCCcEEEEEEEEEcCCceeeeeee
Confidence            98753 3355566667632 4444443222344679999999999865433344

>PLN03138 Protein TOC75; Provisional

Probab=97.43  E-value=0.00061  Score=70.16  Aligned_cols=79  Identities=13%  Similarity=0.061  Sum_probs=67.8

Q ss_pred             CCCeEEEEEEEEC----CCccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEE
Q 019613           74 PVPLRVHDVIVKG----NTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVI  149 (338)
Q Consensus        74 g~~~~~g~V~i~G----~~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~  149 (338)
                      -++|.|.+|.|.|    .+...++.|...+..++|..|+..+|++.   .++|+++|+|+.|.+.+.+.   .++.|.|.
T Consensus       145 ~~~~~vs~v~~~~~~~~~~~~~e~~l~~~i~~kpG~v~trsqLq~d---v~~I~~tG~F~~V~~~v~~~---~dg~v~V~  218 (796)
T PLN03138        145 FKRYKVSEIEFFDRRRNTTVGTEDSFFEMVTLRPGGVYTKAQLQKE---LETLASCGMFEKVDLEGKTK---PDGTLGLT  218 (796)
T ss_pred             cceEEEEEEEEeccccCCCcchHHHHHHHHhcCCCCccCHHHHHHH---HHHHHhcCCceEEEEEEEeC---CCCeEEEE
Confidence            4589999999987    55667888999999999999999999998   99999999999988887642   45679999


Q ss_pred             EEEEEccCc
Q 019613          150 IQVVETKTP  158 (338)
Q Consensus       150 v~v~E~~~~  158 (338)
                      |.+.|.++.
T Consensus       219 ~~i~Eg~~~  227 (796)
T PLN03138        219 ISFTESTWQ  227 (796)
T ss_pred             EEEEeCCce
Confidence            999988654

>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family

Probab=96.84  E-value=0.002  Score=67.08  Aligned_cols=72  Identities=10%  Similarity=-0.040  Sum_probs=61.0

Q ss_pred             EEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEcc
Q 019613           78 RVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETK  156 (338)
Q Consensus        78 ~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~  156 (338)
                      -+.+|.|.|.+.-=+.++..-+..+||..++...|.+.   .++++++|||++|.+.+..    .+..|.|+++|+|++
T Consensus       109 l~~e~~~~~~~~~~~~~~~~~~~~~~G~~~t~~~~~~d---~~~i~~tG~F~~V~~~~~~----~~~Gv~v~~~V~enP  180 (718)
T TIGR00992       109 LQKELEVLATCGMFEKVDYEGKTTQDGRLGTTISFAES---VWAIADRFRCINVGLMPQS----KPLEMDVDMEVKEKP  180 (718)
T ss_pred             eeeeeeeecCcHHHHHHHhhccccCCCCcccHHHHHHH---HHHHHHcEEeeeeEEeecc----CCCceEEEEEEecCC
Confidence            37899999986555556666678999999999999998   9999999999999999874    456799999999976

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein.

>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain)

Probab=96.00  E-value=0.019  Score=40.73  Aligned_cols=68  Identities=24%  Similarity=0.271  Sum_probs=52.7

Q ss_pred             EEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEc
Q 019613           78 RVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVET  155 (338)
Q Consensus        78 ~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~  155 (338)
                      .+.+|.|.|+..++..-|...+....|..+..-.+.++   .++|.+..+.++|.|+-..     |++  |.|.|+|+
T Consensus         2 ~v~~I~V~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~l~~~p~V~~v~V~r~~-----P~~--l~I~V~Er   69 (69)
T PF08478_consen    2 RVKKIEVSGNSYLSKEEILQALGIQKGKNLFSLDLKKI---EQRLEKLPWVKSVSVSRRF-----PNT--LEIKVKER   69 (69)
T ss_dssp             S--EEEEES-SSS-HHHHHHHHCTTSTTTCCCSHHHHH---HHCCCCTTTEEEEEEEEET-----TTE--EEEEEEE-
T ss_pred             CccEEEEECCCcCCHHHHHHHhCcCCCCeEEEECHHHH---HHHHHcCCCEEEEEEEEeC-----CCE--EEEEEEeC
Confidence            47899999999999999999999888997776666666   8999999999999999873     454  56666664

This is found in different types of proteins, usually associated with a transmembrane beta-barrel. FtsQ/DivIB may have chaperone-like roles, which has also been postulated for the POTRA domain in other contexts []. ; PDB: 2ALJ_A 2VH1_B 3J00_Z 2VH2_B.

>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box

Probab=95.33  E-value=0.0051  Score=46.04  Aligned_cols=20  Identities=10%  Similarity=-0.072  Sum_probs=10.8

Q ss_pred             cCccCCCccchhHHHHHHhh
Q 019613           50 AQPQRKSRVDRPKIENLFRR   69 (338)
Q Consensus        50 k~~~~~~a~~~gy~~a~~~~   69 (338)
                      .-.+...+..++||.-..+-
T Consensus        40 e~p~p~fgea~~~~~~v~rY   59 (101)
T PF09026_consen   40 EVPVPEFGEAMAYFTMVKRY   59 (101)
T ss_dssp             ------HHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHhhcchHhhh
Confidence            67788888889998776554

CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.

>PRK05529 cell division protein FtsQ; Provisional

Probab=94.20  E-value=0.2  Score=45.54  Aligned_cols=73  Identities=23%  Similarity=0.233  Sum_probs=61.2

Q ss_pred             CCeEEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEE
Q 019613           75 VPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVE  154 (338)
Q Consensus        75 ~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E  154 (338)
                      +-+.+.+|.|+|+..++.+-|...+....|..+..-.+..+   +++|.+..+.++|.|+-..     |++  |.|+|+|
T Consensus        59 p~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~~---~~~l~~~P~V~sa~V~r~~-----P~t--l~I~V~E  128 (255)
T PRK05529         59 PLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETV---RKKLAAFPLIRSYSVESKP-----PGT--IVVRVVE  128 (255)
T ss_pred             CceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHHH---HHHHhcCCCEeEEEEEEeC-----CCE--EEEEEEE
Confidence            57789999999999999999999998888987655555555   8899999999999999874     444  6889999


Q ss_pred             ccC
Q 019613          155 TKT  157 (338)
Q Consensus       155 ~~~  157 (338)
                      +++
T Consensus       129 r~p  131 (255)
T PRK05529        129 RVP  131 (255)
T ss_pred             eee
Confidence            974

>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]

Probab=88.45  E-value=1.3  Score=40.60  Aligned_cols=71  Identities=23%  Similarity=0.267  Sum_probs=61.8

Q ss_pred             eEEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEcc
Q 019613           77 LRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETK  156 (338)
Q Consensus        77 ~~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~  156 (338)
                      ..+.+|.|+|+..++++-|.+.+.+..+..+..-.+.+.   +++|.+..+-++|.|+-.-     |++  |.|.|+|+.
T Consensus        60 ~~i~~v~v~Gn~~~s~~~I~~~~~l~~~~~~~~ld~~~~---~~~i~~~PwVk~a~V~r~~-----Pnt--v~I~v~Er~  129 (269)
T COG1589          60 FPIRKVSVSGNNQVSEEDILKALGLDGGTSFLTLDLNAI---RENIEKLPWVKSAEVRRQF-----PNT--LEIEVVERE  129 (269)
T ss_pred             ccceEEEEecCcccCHHHHHHHhhhccCCceEEEcHHHH---HHHHHhCCCeEEEEEEEeC-----CCc--EEEEEEEee
Confidence            468999999999999999999999998998888888887   9999999999999999753     444  688899997


Q ss_pred             C
Q 019613          157 T  157 (338)
Q Consensus       157 ~  157 (338)
                      +
T Consensus       130 p  130 (269)
T COG1589         130 P  130 (269)
T ss_pred             e
Confidence            3

>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO)

Probab=87.78  E-value=2.2  Score=30.80  Aligned_cols=72  Identities=19%  Similarity=0.188  Sum_probs=44.2

Q ss_pred             EEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHH-HHHHHhhhcCCCc-ceeeEEEcCCCCCCCCeeEEEEEEEE
Q 019613           78 RVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAA-NIINYKLRELECF-DSVEITLDSGPPELPGTSNVIIQVVE  154 (338)
Q Consensus        78 ~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~-~~~~~~L~~~g~F-~~V~v~~~~~~~~~~~~v~V~v~v~E  154 (338)
                      .+..|.|+|++.+++..|.+.+.-..|.+.....|.++ ....+.+.+.||. +.|.+.+..   ...+.  |.|.|.|
T Consensus         2 ~i~~i~~~G~~~~~~~~l~~~~~~~~g~~l~~~~l~~~~~~l~~~y~~~GY~~s~v~~p~q~---i~~G~--l~i~V~e   75 (76)
T PF08479_consen    2 PIKGIRFEGNTLLPEEELQAILAPYIGRCLTLADLQQLADALTNYYREKGYITSRVYLPPQD---ISDGV--LTIRVVE   75 (76)
T ss_dssp             ---EEEEES-TSSSCCHHHHHHGGGTTSBB-HHHHHHHHHHHHHHHHHTT-TT-EEEEEEEE---ETTSE--EEEEEE-
T ss_pred             CeEEEEEECCCcCCHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHcCceEEEEEeCCee---cCCCE--EEEEEEc
Confidence            57899999999999999999997777888776665554 3345666788998 556664431   23444  4555544

ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	338
2qdz_A	554	TPSB transporter FHAC; beta barrel, potra domain,	99.8
3q6b_A	189	Outer membrane protein assembly complex, YAET Pro;	99.45
2x8x_X	235	TLR1789 protein, OMP85; chaperone, TOC75, protein	99.07
3mc9_A	316	ALR2269 protein; polypeptide transport associated,	99.04
2qdf_A	335	OMP85, outer membrane protein assembly factor YAET	99.0
3efc_A	395	OMP85, outer membrane protein assembly factor YAET	98.81
3efc_A	395	OMP85, outer membrane protein assembly factor YAET	98.64
2qdf_A	335	OMP85, outer membrane protein assembly factor YAET	98.33
3mc9_A	316	ALR2269 protein; polypeptide transport associated,	98.28
2x8x_X	235	TLR1789 protein, OMP85; chaperone, TOC75, protein	98.06
3q6b_A	189	Outer membrane protein assembly complex, YAET Pro;	97.98
2vh2_A	255	FTSQ, cell division protein FTSQ; potra, cell cycl	91.91
2vh1_A	220	FTSQ, cell division protein FTSQ; potra, membrane,	91.25
2qdz_A	554	TPSB transporter FHAC; beta barrel, potra domain,	80.06

>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A

Probab=99.80  E-value=3.2e-18  Score=170.54  Aligned_cols=270  Identities=12%  Similarity=0.047  Sum_probs=182.6

Q ss_pred             CccccccccCccCCCccchhHHHHHHhhhc------------CCCCCeEEEEEEEECCCccCHHHHHH---HhhhhccCc
Q 019613           42 DLEEDDDAAQPQRKSRVDRPKIENLFRRIR------------NGPVPLRVHDVIVKGNTKTKDCLIEA---ELDAIRNAT  106 (338)
Q Consensus        42 ~~~~ye~~k~~~~~~a~~~gy~~a~~~~~~------------~~g~~~~~g~V~i~G~~~t~~~~I~r---~l~~~~G~~  106 (338)
                      .-+.+++++..|++...++||+.+....-.            ++|   +|++|.|+|+.++++.+|++   ++++++|++
T Consensus        90 ~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~~~g~l~i~v~eG---~i~~I~i~G~~~~~~~~l~~~~~~~~~~~G~~  166 (554)
T 2qdz_A           90 DNEQLFLLVKALSAALYDRGYATSIVTFVPPGVVDGVLKLKVEWG---RIKGWLIDGKPLEGTRDRMMVFSAMPGWQDKV  166 (554)
T ss_dssp             CSTTHHHHHHHHHHHHHHTTCTTCEEEEEEEEEETTEEEEEEECC---EEEEEEETTEECCSHHHHHHHHHHSTTCTTCB
T ss_pred             CHHHHHHHHHHHHHHHHHcCceeeeEEcccccccCCEEEEEEEeE---EEEEEEECCCCccchhhhhhhhhhccccCCCc
Confidence            345667788888888889999875542211            344   38999999999999999999   999999999


Q ss_pred             cHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEccCceeeeeeE-E-e--cCCCcceEEEEEEEE
Q 019613          107 TMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGT-Y-T--KGEAKSSTVEGSLKY  182 (338)
Q Consensus       107 y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~~~~~~~~G~-y-s--t~~~~g~~~~~~~~~  182 (338)
                      |+...|++.   .++|.+++  ..|.+.+.+.  ..++.++|+|.|+|+++ +.+++|+ + +  ++...++++.+.+.+
T Consensus       167 ~n~~~le~~---~~~L~~~~--~~v~~~~~p~--~~~g~~~l~v~v~e~~~-~~~~~g~~~~g~g~~~tg~~~~~~~~~~  238 (554)
T 2qdz_A          167 LNVFDIDQA---IYNINNGG--KTGNITIVPA--DEYGYSYLDLQLQRRAL-PRVSLGMDNSGPGTPENGRYKYNASVTA  238 (554)
T ss_dssp             CCHHHHHHH---HHHHCSSS--EEEEEEEEEC--SSTTEEEEEEEEEECCS-CEEEEEEEECSCSSSCSSCEEEEEEEEE
T ss_pred             CCHHHHHHH---HHHHhcCc--hhceEEEecC--CCCCeeEEEEEEeeCCc-EEEEEEEcCCCCCCCCccceEEEEEEEe
Confidence            999999998   99999999  7788888753  46789999999999875 4667773 2 2  222244899999999


Q ss_pred             ecCCCCceeEEEEEEeec------ccceEEEEEEeccccCCCCCCeeEEEEEEeeccc--c---ccCceEEEEeeEEEec
Q 019613          183 KNGFGYGDLWDASLAYGF------DRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWL--K---FSSYKEQSLGLSLGLF  251 (338)
Q Consensus       183 ~Nl~G~G~~l~~~~~~s~------~~~~~~~~~y~~P~~~~~~~~~~~~~~~~~~d~~--~---~~~y~~~~~g~~~~l~  251 (338)
                      +|++|.|+++++++..+.      ...+.+.++|..|+..   +.+.+.+.+...+..  .   ...|...+.+++++++
T Consensus       239 ~n~~g~gd~l~~~~~~~~~~~~~~~~~~~~~~~y~~P~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  315 (554)
T 2qdz_A          239 NDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSVPLGR---TRLDLQTGYSTYRNLLKTRYGQYQSAGNSRSFGLKAT  315 (554)
T ss_dssp             ECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEEEEEEETT---EEEEEEEEEEEEECCCSSSSCCCCCEEEEEEEEEEEE
T ss_pred             CCCCCCCcEEEEEEEecCccccCCCCceEEEEEEEEEEec---CeEEEEEEEeEEEEEccCCcceEEEEeeEEEEEEEEE
Confidence            999999999999999986      1268899999999973   345555555443211  0   1234445555555543


Q ss_pred             ------CceeEEEEEEEEEEEecC-CCCCCcHHHHHHhCCCeeeeEEEEEEEecCCCCCCCCCceeeEEEEeeee-----
Q 019613          252 ------SIRHHDLVYNLAWRTLTD-PSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGG-----  319 (338)
Q Consensus       252 ------~~~~~~l~~~~~~~~~~~-~~~~~s~~i~~~~~~~~~~~~~~~~~~d~rD~~~~Pt~G~~~~~~~e~ag-----  319 (338)
                            ..+.+.+++.+.+.++.. +...   .+  .........+.++++|++++    |..++.+.+.+..+.     
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~G~~~~a~  386 (554)
T 2qdz_A          316 RLLYRDTRSQFSVYGGLKLRQNKNYLAGT---RL--DVSSKHYSDVTVGMQYSTQR----GANAYFGDLSFTRGVGVNNG  386 (554)
T ss_dssp             EEEECCSSEEEEEEEEEEEEEEEEECCTT---SC--CCEEEEEEEEEEEEEEEEEC----SSEEEEEEEEEEECCCC---
T ss_pred             EEEEECCCeEEEEEEEEEEEEeeeeeCCc---Cc--cccCceEEEEEEEEEEEEEe----cCeEEEEEEEEEecCCCCCC
Confidence                  234456666655555432 1110   00  01223456788899999876    344444444443221     


Q ss_pred             -------cCCCccCceEEeeEeEEe
Q 019613          320 -------LAPDSRCLRFLRQFFCLL  337 (338)
Q Consensus       320 -------lgsd~~~~~f~k~~~~~~  337 (338)
                             .+++   .+|.|..+++.
T Consensus       387 ~~~~~~~~~~~---~~f~k~~~~~~  408 (554)
T 2qdz_A          387 KYAAYDERGPQ---GNVSRFNGSLA  408 (554)
T ss_dssp             --------------CCCEEEEEEEE
T ss_pred             cCcccccCCCc---ceEEEEEEEEE
Confidence                   1234   34888887764

>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A

Probab=99.45  E-value=2.9e-15  Score=128.88  Aligned_cols=110  Identities=15%  Similarity=0.218  Sum_probs=97.2

Q ss_pred             CCccccccccCccCCCccchhHHHHHHhhh-c--------------CCCCCeEEEEEEEECCCccCHHHHHHHhhhhccC
Q 019613           41 DDLEEDDDAAQPQRKSRVDRPKIENLFRRI-R--------------NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNA  105 (338)
Q Consensus        41 ~~~~~ye~~k~~~~~~a~~~gy~~a~~~~~-~--------------~~g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~  105 (338)
                      =+-+.+++++..|.+...++||+.+..... .              +.|++++|++|.|.|+.++++.+|++.+++++|+
T Consensus        65 ~~~~~l~~~~~~I~~~y~~~GY~~a~v~~~~~~d~~~~~v~l~~~V~eG~~~~i~~I~i~Gn~~~~~~~i~r~l~~~~G~  144 (189)
T 3q6b_A           65 YNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGA  144 (189)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTTCCSCEEEEEEEEETTTTEEEEEEEEECCCCCEEEEEEEESCSSSCHHHHHTTCCSCTTS
T ss_pred             eCHHHHHHHHHHHHHHHHhCCCceEEeeEEEEecCCCCEEEEEEEECCCCeEEEEEEEEECCccCCHHHHHhhccCCCCC
Confidence            345678889999999999999998766542 1              7899999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEE
Q 019613          106 TTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVE  154 (338)
Q Consensus       106 ~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E  154 (338)
                      +|+...|.++   +++|.++|||++|.|.+.+.+ ..++.++|.|.|+|
T Consensus       145 ~~n~~~l~~~---~~~L~~lg~F~~V~i~~~~~~-~~~~~vdv~v~V~E  189 (189)
T 3q6b_A          145 WLGSDLVDQG---KERLNRLGFFETVDTDTQRVP-GSPDQVDVVYKVKE  189 (189)
T ss_dssp             BCCHHHHHHH---HHHHHHHSCCSEEEEEEEEET-TEEEEEEEEEEEEC
T ss_pred             ccCHHHHHHH---HHHHHhCCCceeeEEEeccCC-CCCCEEEEEEEEEC
Confidence            9999999998   999999999999999998642 35678999999986

>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}

Probab=99.07  E-value=5.7e-12  Score=111.19  Aligned_cols=110  Identities=23%  Similarity=0.285  Sum_probs=94.9

Q ss_pred             CccccccccCccCCCccchhHHHHHHhhhc------------CCCC--CeEEEEEEEECCC---ccCHHHHHHHhhhhcc
Q 019613           42 DLEEDDDAAQPQRKSRVDRPKIENLFRRIR------------NGPV--PLRVHDVIVKGNT---KTKDCLIEAELDAIRN  104 (338)
Q Consensus        42 ~~~~ye~~k~~~~~~a~~~gy~~a~~~~~~------------~~g~--~~~~g~V~i~G~~---~t~~~~I~r~l~~~~G  104 (338)
                      +...+++++..|.+...++||+.|......            ++|+  +++|+.|.|.|+.   ++++.+|++.+++++|
T Consensus       108 ~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~~~~~l~~~v~eG~~~~i~i~~i~~~G~~~~~~~~~~~i~~~~~~~~G  187 (235)
T 2x8x_X          108 NLRELQAGIEKINTFYRDNGYILGQVVGTPQVDPDGVVTLQVAEGVVEQVTYRFLNKEGEPTKQRTRDFVISREMDTQPG  187 (235)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCTTCEEEEEEEECTTSEEEEEEECCBEEEEEEEEBCTTSCBCCCCSCHHHHHTTCSCCTT
T ss_pred             CHHHHHHHHHHHHHHHHhCCCeeEEEEeecccCCCcEEEEEEEeCceEEEEEEEecccCCcCCCccchhheeeeeecCCC
Confidence            455667788888888899999877665432            5788  7788899999988   9999999999999999


Q ss_pred             CccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEcc
Q 019613          105 ATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETK  156 (338)
Q Consensus       105 ~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~  156 (338)
                      ++|+.+.|.+.   +++|.++|||++|.+.+.+.  ..++.++|.|.|+|++
T Consensus       188 ~~~~~~~l~~~---~~~L~~~g~f~~v~i~~~~~--~~~~~~~l~i~v~e~~  234 (235)
T 2x8x_X          188 VVLNQKTVQAD---LRRLFELGLFEDVQVALEPG--QNPRRVNLILNIKERN  234 (235)
T ss_dssp             SBCCHHHHHHH---HHHHHHHTCEEEEEEEEEEC--SSTTSEEEEEEEEECC
T ss_pred             CccCHHHHHHH---HHHHHhcCCcccceEEeccC--CCCCeeEEEEEEEeCC
Confidence            99999999998   99999999999999998853  3567899999999986

>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A

Probab=99.04  E-value=1.8e-12  Score=120.13  Aligned_cols=111  Identities=19%  Similarity=0.219  Sum_probs=27.3

Q ss_pred             CCccccccccCccCCCccchhHHHHHHhhhc------------CCC--CCeEEEEEEEE-------CC---CccCHHHHH
Q 019613           41 DDLEEDDDAAQPQRKSRVDRPKIENLFRRIR------------NGP--VPLRVHDVIVK-------GN---TKTKDCLIE   96 (338)
Q Consensus        41 ~~~~~ye~~k~~~~~~a~~~gy~~a~~~~~~------------~~g--~~~~~g~V~i~-------G~---~~t~~~~I~   96 (338)
                      =....+++++..|.+...++||+.|......            ++|  .+++|+.|.|.       |+   .+|++.+|+
T Consensus       174 ~n~~~l~~~~~~I~~~y~~~GY~~A~V~~~~~~~~~g~l~i~V~eG~i~~i~v~~i~~~Gn~~~~~Gn~i~~~t~~~vI~  253 (316)
T 3mc9_A          174 LNLRDLQEGIKELTKRYQDQGYVLANVVGAPQVSENGVVTLQVAEGVVENISVRFRNKEGQDVNEQGQPIRGRTQDYIIT  253 (316)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCTTCEECSSCEECTTSEEEEEEECCEEC-------------------------------
T ss_pred             eCHHHHHHHHHHHHHHHHHCCCeeEEeeeccEECCCCEEEEEEEcCccccEEEEEEeccccccccCCcccccccCHHHHH
Confidence            3456778889999999999999988876422            778  78889988888       55   589999999


Q ss_pred             HHhhhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEcc
Q 019613           97 AELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETK  156 (338)
Q Consensus        97 r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~  156 (338)
                      |++++++|++|+.+.|.++   +++|+++|+|++|.|.+.+.  ..++.++|.|.|+|+.
T Consensus       254 r~l~~~~G~~yn~~~l~~~---~~~L~~lg~F~~V~v~~~p~--~~~~~vdl~v~v~e~~  308 (316)
T 3mc9_A          254 REVELKPGQVFNRNTVQKD---LQRVFGTGLFEDVNVSLDPG--TDPTKVNVVVNVVERS  308 (316)
T ss_dssp             ------------------------------------------------------------
T ss_pred             hhhccCCCCcCCHHHHHHH---HHHHHcCCCcceeeEEeecC--CCCCeEEEEEEEEEcc
Confidence            9999999999999999998   99999999999999999864  4678999999999985

>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A

Probab=99.00  E-value=4.6e-11  Score=111.29  Aligned_cols=112  Identities=11%  Similarity=0.042  Sum_probs=94.9

Q ss_pred             CccccccccCccCCCccchhHHHHHHhhhc----------------CCCCCeEEEEEEEECCCccCHHHHHHHhhhhccC
Q 019613           42 DLEEDDDAAQPQRKSRVDRPKIENLFRRIR----------------NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNA  105 (338)
Q Consensus        42 ~~~~ye~~k~~~~~~a~~~gy~~a~~~~~~----------------~~g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~  105 (338)
                      +.+.+++.+..|++...++||+++.....+                ++|++|+|++|.|.|+.++++.+|++.+++++|+
T Consensus       199 ~~~~l~~~~~~l~~~y~~~GY~~~~v~~~~~~~~~~~~~v~v~i~v~eG~~~~i~~I~i~g~~~~~~~~l~~~~~~~~G~  278 (335)
T 2qdf_A          199 QKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGE  278 (335)
T ss_dssp             CCSCHHHHHHHHHHHHHTTTCTTCEEEEEEEEECTTSSEEEEEEEEECCCCCEEEEEEEEEECTTCHHHHHHHTCCCTTE
T ss_pred             CHHHHHHHHHHHHHHHHHCCCeEEEEcCCEEEEcCCCCEEEEEEEEccCCcEEEEEEEEEccccCChHHHHHhcCCCCCC
Confidence            344667778888888889999988875311                7899999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhhh----cCCC-cceeeEEEcCCCCCCCCeeEEEEEEEEccCc
Q 019613          106 TTMQEIIQAANIINYKLR----ELEC-FDSVEITLDSGPPELPGTSNVIIQVVETKTP  158 (338)
Q Consensus       106 ~y~~~~l~~~~~~~~~L~----~~g~-F~~V~v~~~~~~~~~~~~v~V~v~v~E~~~~  158 (338)
                      +|+...|.+.   .++|.    ++|| |..|.+.+.++  ..++.++|.|.|+|.++.
T Consensus       279 ~~~~~~l~~~---~~~l~~~~~~~Gy~f~~v~~~~~~~--~~~~~vdv~i~v~e~~~~  331 (335)
T 2qdf_A          279 LYNGTKVTKM---EDDIKKLLGRYGYAYPRVQSMPEIN--DADKTVKLRVNVDAGNRF  331 (335)
T ss_dssp             ECCHHHHHHH---HHHHHHHHHTTTBSSCEEEEEEEEE--TTTTEEEEEEEEECCCBC
T ss_pred             ccCHHHHHHH---HHHHHHHHHhCCCCceEEEEeeEec--CCCCEEEEEEEEeeCCeE
Confidence            9999999997   77777    5698 99998888743  356799999999999854

>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli}

Probab=98.81  E-value=3.1e-11  Score=115.26  Aligned_cols=93  Identities=13%  Similarity=0.161  Sum_probs=26.0

Q ss_pred             ccccccccCccCCCccchhHHHHHHhhhc---------------CCCCCeEEEEEEEECCCccCHHHHHHHhhhhccCcc
Q 019613           43 LEEDDDAAQPQRKSRVDRPKIENLFRRIR---------------NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATT  107 (338)
Q Consensus        43 ~~~ye~~k~~~~~~a~~~gy~~a~~~~~~---------------~~g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y  107 (338)
                      -+.+++.+..|.+...++||+.+...-.-               ++|++++|++|.|.|+.+|++.+|+|++++++|++|
T Consensus       281 ~~~l~~~~~~l~~~~~~~GY~~~~v~~~~~~~~~~~~v~l~~~v~eG~~~~i~~I~i~Gn~~~~~~virr~~~~~~G~~y  360 (395)
T 3efc_A          281 GTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWL  360 (395)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSSCEEEEEEEEETTTTEEEEEEEEECCCCCCC----------------------------
T ss_pred             HHHHHHHHHHHHHHHHhCCCCccEEEEeeEecCCCCEEEEEEEEEeCCeEEEEEEEEECCCcCChHHHhhhcccCCCccC
Confidence            34455667778888888999766543210               789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCcceeeEEEcCC
Q 019613          108 MQEIIQAANIINYKLRELECFDSVEITLDSG  138 (338)
Q Consensus       108 ~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~  138 (338)
                      +..+|.++   +++|.++|||++|.|.+.+.
T Consensus       361 ~~~~l~~~---~~~L~~lg~F~~V~i~~~~~  388 (395)
T 3efc_A          361 GSDLVDQG---KERLNRLGFFETVDTDTQRV  388 (395)
T ss_dssp             -------------------------------
T ss_pred             CHHHHHHH---HHHHHhCCCcceeeeeccCC
Confidence            99999998   99999999999999998754

>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli}

Probab=98.64  E-value=3.7e-09  Score=100.79  Aligned_cols=114  Identities=12%  Similarity=0.033  Sum_probs=91.8

Q ss_pred             ccccccccCccCCCccchhHHHHHHhhhc----------------CCCCCeEEEEEEEECCCccCHHHHHHHhhhhccCc
Q 019613           43 LEEDDDAAQPQRKSRVDRPKIENLFRRIR----------------NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNAT  106 (338)
Q Consensus        43 ~~~ye~~k~~~~~~a~~~gy~~a~~~~~~----------------~~g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~~  106 (338)
                      .+.+++.+..|.+...++||+++......                ++|++|+|++|.|.|+..+++..|++.+++++|++
T Consensus       199 ~~~l~~d~~~l~~~y~~~GY~~a~v~~~~~~~~~~~~~v~v~i~V~eG~~y~i~~I~i~Gn~~~~~~~l~~~~~l~~G~~  278 (395)
T 3efc_A          199 KQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGEL  278 (395)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTCEEEECCCEECTTSCSEECEEEEECCCCCEEEEECCBSCCTTCHHHHHHTCCCCSSCB
T ss_pred             HHHHHhHHHHHHHHHHhCCCceEEEeccEEEECCCCcEEEEEEEEecCCCEEEEEEEEECCCCCCHHHHHHHhccCCCCC
Confidence            35566778888888899999998765321                78999999999999999999999999999999999


Q ss_pred             cHHHHHHHH-HHHHHhhhcCCC-cceeeEEEcCCCCCCCCeeEEEEEEEEccCc
Q 019613          107 TMQEIIQAA-NIINYKLRELEC-FDSVEITLDSGPPELPGTSNVIIQVVETKTP  158 (338)
Q Consensus       107 y~~~~l~~~-~~~~~~L~~~g~-F~~V~v~~~~~~~~~~~~v~V~v~v~E~~~~  158 (338)
                      |+.+.|.+. +...+.|.+.|| |..|...+...  ...+.++|.+.|.|.++.
T Consensus       279 y~~~~l~~~~~~l~~~~~~~GY~~~~v~~~~~~~--~~~~~v~l~~~v~eG~~~  330 (395)
T 3efc_A          279 YNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEIN--DADKTVKLRVNVDAGNRF  330 (395)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCSSCEEEEEEEEE--TTTTEEEEEEEEECCCCC
T ss_pred             cCHHHHHHHHHHHHHHHHhCCCCccEEEEeeEec--CCCCEEEEEEEEEeCCeE
Confidence            999999875 223667888999 45676555433  346789999999999753

>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A

Probab=98.33  E-value=8.2e-08  Score=89.15  Aligned_cols=124  Identities=6%  Similarity=-0.064  Sum_probs=88.5

Q ss_pred             CCccccccccCccCCCccchhHHHHHHhhhc--------------CCCCCeEEEEEEEECCCccCHHHHHHHhhhhcc--
Q 019613           41 DDLEEDDDAAQPQRKSRVDRPKIENLFRRIR--------------NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRN--  104 (338)
Q Consensus        41 ~~~~~ye~~k~~~~~~a~~~gy~~a~~~~~~--------------~~g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G--  104 (338)
                      =+...+++++..|.+...++||++|......              ++|++++|++|.|.|+..+++..|++.+.+++|  
T Consensus       109 ~~~~~~~~~~~~l~~~y~~~GY~~a~v~~~~~~~~~~~~~v~~~i~eG~~~~i~~I~~~G~~~~~~~~l~~~~~~~~g~~  188 (335)
T 2qdf_A          109 LDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAEIQQINIVGNHAFTTDELISHFQLRDEVP  188 (335)
T ss_dssp             CCTTSHHHHHHHHHHHGGGGTBSSCEEEEEEEEETTTEEEEEEEEECCCBCEEEEEEEESCCSSCHHHHHGGGSCC----
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCeEEEEEEEecCCEEEEEEEEEECCccCCHHHHHHHhccCCCcc
Confidence            3566788899999999999999988665322              789999999999999999999999999988887  


Q ss_pred             -------CccHHHHHHHHHH-HHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEEEccCceeeeee
Q 019613          105 -------ATTMQEIIQAANI-INYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIG  164 (338)
Q Consensus       105 -------~~y~~~~l~~~~~-~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~~~~~~~~~G  164 (338)
                             ++|+.+.|.+... .++.+.+.|||......+.......++.++|.|.|.|.++..-..+.
T Consensus       189 ~~~~~~g~~~~~~~l~~~~~~l~~~y~~~GY~~~~v~~~~~~~~~~~~~v~v~i~v~eG~~~~i~~I~  256 (335)
T 2qdf_A          189 WWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTVNITEGDQYKLSGVE  256 (335)
T ss_dssp             ----------CCSCHHHHHHHHHHHHHTTTCTTCEEEEEEEEECTTSSEEEEEEEEECCCCCEEEEEE
T ss_pred             ccccccCCeeCHHHHHHHHHHHHHHHHHCCCeEEEEcCCEEEEcCCCCEEEEEEEEccCCcEEEEEEE
Confidence                   8999888877422 25566778998754333221111235679999999999754333444

>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A

Probab=98.28  E-value=1.2e-06  Score=80.83  Aligned_cols=78  Identities=15%  Similarity=0.129  Sum_probs=70.2

Q ss_pred             CCCCCeEEEEEEEECC----CccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeE
Q 019613           72 NGPVPLRVHDVIVKGN----TKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSN  147 (338)
Q Consensus        72 ~~g~~~~~g~V~i~G~----~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~  147 (338)
                      +.|+++.|.+|.|+|+    ....+..|.+.+.+++|+.|+.+.|.+.   .++|.++|||+.|.+.+..    .++.+.
T Consensus        57 ~Eg~~~~I~~I~i~Gn~~~~~~~~~~~l~~~l~~k~G~~~~~~~l~~d---i~~L~~~GyF~~V~v~~~~----~~~~v~  129 (316)
T 3mc9_A           57 TTEPRVLVSEVLVRPQSGQLTPELETQVYNVIRTQPGRTTTRSQLQED---INAIFGTGFFSNVQASPED----TPLGVR  129 (316)
T ss_dssp             -CCCCEEEEEEEEEESSSCCCHHHHHHHHHHCCCCTTSEECHHHHHHH---HHHHHHTSCEEEEEEEEEE----ETTEEE
T ss_pred             CCCCceEEEEEEEECCcccccccCHHHHHhhccCCCCCccCHHHHHHH---HHHHHHCCCceEEEEEEec----CCCeEE
Confidence            5699999999999999    8899999999999999999999999987   8999999999999988763    246789


Q ss_pred             EEEEEEEcc
Q 019613          148 VIIQVVETK  156 (338)
Q Consensus       148 V~v~v~E~~  156 (338)
                      |.|.|.|.+
T Consensus       130 l~~~V~egp  138 (316)
T 3mc9_A          130 VSFIVQPNP  138 (316)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEecCc
Confidence            999999997

>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}

Probab=98.06  E-value=7.8e-06  Score=71.44  Aligned_cols=76  Identities=16%  Similarity=0.164  Sum_probs=67.7

Q ss_pred             CCCeEEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEEE
Q 019613           74 PVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVV  153 (338)
Q Consensus        74 g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~  153 (338)
                      +++..|.+|.|+|+.......|+..++.++|+.|+.+.+.+.   .++|+++|||.+|.|....    .++.+.|+|.|.
T Consensus         2 ~~~~~I~~I~i~G~~~~~~~~i~~~l~~~~g~~~~~~~~~~~---~~~L~~~Gyf~~~~v~~~~----~~~~~~l~~~v~   74 (235)
T 2x8x_X            2 EPKVLIAEVVVEGATPELEQLVYQVISTRPGSTTTRTQLQQD---TNAIFATGFFADVNAVPRD----TPLGVRITFVVR   74 (235)
T ss_dssp             CCCEEEEEEEEESCCHHHHHHHHHHCCCCTTCEECHHHHHHH---HHHHHTTSCEEEEEEEEEE----ETTEEEEEEEEE
T ss_pred             CCccEEEEEEEECCCccCHHHHHHhhccCCCCccCHHHHHHH---HHHHHHCCCcEEEEEEEec----CCCcEEEEEEEE
Confidence            678899999999999999999999999999999999999997   8999999999888888753    234678999999


Q ss_pred             Ecc
Q 019613          154 ETK  156 (338)
Q Consensus       154 E~~  156 (338)
                      |.+
T Consensus        75 eg~   77 (235)
T 2x8x_X           75 PYP   77 (235)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            997

>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A

Probab=97.98  E-value=3.5e-05  Score=65.50  Aligned_cols=101  Identities=13%  Similarity=-0.005  Sum_probs=65.2

Q ss_pred             HHHHHHhhhc---CCCCCeEEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHH-HHHHHhhhcCCCcc-eeeEEEc
Q 019613           62 KIENLFRRIR---NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAA-NIINYKLRELECFD-SVEITLD  136 (338)
Q Consensus        62 y~~a~~~~~~---~~g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~-~~~~~~L~~~g~F~-~V~v~~~  136 (338)
                      ||++..-+..   ..+++|+|++|.|.|+....+..|++.+.+++|++|+...+.+. +...+.|.+.||+. .|...+.
T Consensus        17 ~~~~~~~~~~~~~~~~~~y~i~~I~i~G~~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY~~a~v~~~~~   96 (189)
T 3q6b_A           17 YFEGSHMASMTGGQQMGRYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPE   96 (189)
T ss_dssp             ------------------CEEEEEEEEEECTTCHHHHHHHTCCCTTCBCCHHHHHHHHHHHHHHHHTTTCCSCEEEEEEE
T ss_pred             eeechhhhhhCCCCCCCCEEEEEEEEECCCcCCHHHHHHhhCCCCCCeeCHHHHHHHHHHHHHHHHhCCCceEEeeEEEE
Confidence            5555544433   46999999999999999889999999999999999999888765 22355667789975 4555433


Q ss_pred             CCCCCCCCeeEEEEEEEEccCceeeeee
Q 019613          137 SGPPELPGTSNVIIQVVETKTPLSGQIG  164 (338)
Q Consensus       137 ~~~~~~~~~v~V~v~v~E~~~~~~~~~G  164 (338)
                      .+  ...+.+.|.+.|.|.++.+-..+-
T Consensus        97 ~d--~~~~~v~l~~~V~eG~~~~i~~I~  122 (189)
T 3q6b_A           97 IN--DADKTVKLRVNVDAGNRFYVRKIR  122 (189)
T ss_dssp             EE--TTTTEEEEEEEEECCCCCEEEEEE
T ss_pred             ec--CCCCEEEEEEEECCCCeEEEEEEE
Confidence            22  245679999999999753333444

>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica}

Probab=91.91  E-value=0.28  Score=43.14  Aligned_cols=73  Identities=16%  Similarity=0.208  Sum_probs=57.0

Q ss_pred             CCeEEEEEEEECCC-ccCHHHHHHHh-hhhccCccHHHHHHHHHHHHHhhhcCCCcceeeEEEcCCCCCCCCeeEEEEEE
Q 019613           75 VPLRVHDVIVKGNT-KTKDCLIEAEL-DAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQV  152 (338)
Q Consensus        75 ~~~~~g~V~i~G~~-~t~~~~I~r~l-~~~~G~~y~~~~l~~~~~~~~~L~~~g~F~~V~v~~~~~~~~~~~~v~V~v~v  152 (338)
                      +.+.+.+|.|+|+. .++..-|+..+ ++..|..+..-.+.++   +++|.+..+.++|.|+-..     |++  |.|.|
T Consensus        24 p~f~v~~I~V~G~~~~vs~~eI~~~~~~~~~g~~~~~vd~~~i---~~~l~~~PwV~~a~V~r~~-----P~~--L~I~V   93 (255)
T 2vh2_A           24 SRLPLSKLVVTGERHYTTNDDIRQAILSLGAPGTFMTQDVNII---QQQIERLPWIQQASVRKQW-----PDE--LKIHL   93 (255)
T ss_dssp             ---CCCEEEEESCCSSCCHHHHHHHHTTSCCSSTTTSCHHHHH---HHHTSCCSSEEEEEEEEET-----TTE--EEEEE
T ss_pred             CCceEeEEEEECCCcccCHHHHHHHHhcccCCCccEEEcHHHH---HHHHHcCCCeeEEEEEEEC-----CCe--EEEEE
Confidence            35568899999998 47888888887 7877787666666666   8999999999999998763     444  68999


Q ss_pred             EEccC
Q 019613          153 VETKT  157 (338)
Q Consensus       153 ~E~~~  157 (338)
                      +|+.+
T Consensus        94 ~Er~P   98 (255)
T 2vh2_A           94 VEYVP   98 (255)
T ss_dssp             EECCC
T ss_pred             EEeee
Confidence            99975

>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli}

Probab=91.25  E-value=0.4  Score=40.97  Aligned_cols=69  Identities=16%  Similarity=0.233  Sum_probs=55.6

Q ss_pred             EEEEEEECCC-ccCHHHHHHHh-hhhccCccHHHHHHHHHHHHHhhh-cCCCcceeeEEEcCCCCCCCCeeEEEEEEEEc
Q 019613           79 VHDVIVKGNT-KTKDCLIEAEL-DAIRNATTMQEIIQAANIINYKLR-ELECFDSVEITLDSGPPELPGTSNVIIQVVET  155 (338)
Q Consensus        79 ~g~V~i~G~~-~t~~~~I~r~l-~~~~G~~y~~~~l~~~~~~~~~L~-~~g~F~~V~v~~~~~~~~~~~~v~V~v~v~E~  155 (338)
                      +.+|.|+|+. .++..-|+..+ ++..|..+..-.+.++   +++|. +..+.++|.|+-..     |++  |.|.|+|+
T Consensus         1 v~~V~V~G~~~~~s~~~I~~~~~~~~~~~~~~~vd~~~i---~~~l~~~~P~V~~a~V~r~~-----P~~--l~I~V~Er   70 (220)
T 2vh1_A            1 MSKLVLTGERHYTRNDDIRQSILALGEPGTFMTQDVNII---QTQIEQRLPWIKQVSVRKQW-----PDE--LKIHLVEY   70 (220)
T ss_dssp             -CEEEEESCCSSCCHHHHHHHHHTTSCTTCGGGSCHHHH---HHHHHHHCTTEEEEEEEEET-----TTE--EEEEEEEC
T ss_pred             CcEEEEeCCCccCCHHHHHHHHhhccCCCCeEEECHHHH---HHHHHhcCCCEEEEEEEEeC-----CCc--eEEEEEEe
Confidence            4589999998 58888888888 7777787776677776   89999 99999999999653     454  68999999


Q ss_pred             cC
Q 019613          156 KT  157 (338)
Q Consensus       156 ~~  157 (338)
                      .+
T Consensus        71 ~p   72 (220)
T 2vh1_A           71 VP   72 (220)
T ss_dssp             CE
T ss_pred             cc
Confidence            74

>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A

Probab=80.06  E-value=0.23  Score=48.56  Aligned_cols=78  Identities=12%  Similarity=-0.004  Sum_probs=55.2

Q ss_pred             CCCeEEEEEEEECCCccCHHHHHHHhhhhccCccHHHHHHHH-HHHHHhhhcCCCcc-eeeEEEcCCCCCCCCeeEEEEE
Q 019613           74 PVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAA-NIINYKLRELECFD-SVEITLDSGPPELPGTSNVIIQ  151 (338)
Q Consensus        74 g~~~~~g~V~i~G~~~t~~~~I~r~l~~~~G~~y~~~~l~~~-~~~~~~L~~~g~F~-~V~v~~~~~~~~~~~~v~V~v~  151 (338)
                      |++++|++|.|+|+..+++..|++.+..++|++++.+.|.++ +.....+.+.||+. .|.+....   ...+  .|.|.
T Consensus        56 g~~~~i~~I~~~G~~~~~~~~l~~~~~~~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~---~~~g--~l~i~  130 (554)
T 2qdz_A           56 GHTVTVHAVDLDFGVEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVPPG---VVDG--VLKLK  130 (554)
T ss_dssp             CCSSSSCCEEEECCSSSCCCSCSTTSTTSSSSCBCSTTHHHHHHHHHHHHHHTTCTTCEEEEEEEE---EETT--EEEEE
T ss_pred             CceEEEEEEEEECCccCCHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEccccc---ccCC--EEEEE
Confidence            899999999999998888888888888889999988777665 22345557889964 45442221   1122  36777


Q ss_pred             EEEcc
Q 019613          152 VVETK  156 (338)
Q Consensus       152 v~E~~  156 (338)
                      |.|.+
T Consensus       131 v~eG~  135 (554)
T 2qdz_A          131 VEWGR  135 (554)
T ss_dssp             EECCE
T ss_pred             EEeEE
Confidence            77764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00