Citrus Sinensis ID: 019646

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
MATCGTTPSSLMLTYAATPVHPQDLTPSLSLLSFKPSKTAAFSLCTNLSVRGGERRASKWLDLYPLRQNKNGLPGHMLAAASAVEADTDLATDDVEDDTQGGTEGATATATATISTKPKKGKAALPLKRDRMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSNF
cccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHcccccccccEEEEEcccccccccccEEEcEEEcccccccEEEEEEEEccccHHHHHHcccccccHHHHHHHHHcccccEEEEEEccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHcccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEccccccEEEcHHHHHcccccccc
ccccccccccHHHHHHccccccccccccccHccccccccccEccccHHHccccccccccccccccHHHccccccEEEEEEEcccccccccHccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHccccccccEEEEEEEEccccccHHHccEEEEEccccccccccEEEEcccHHHHHHHHccccEEEcHHHHHHHHcccccccEEEEcHHHHHHHHHHHHHHHHHccccccccccEcccHHHHHHHHHccEEEEEcccccEEEEEEEEccccHHHHHHHHHHHHHHHHcccccccccccEEEEEEEccccccEEEcHHHHHHccccccc
matcgttpsslmltyaatpvhpqdltpslsllsfkpsktaaFSLCTNlsvrggerraskwldlyplrqnknglpgHMLAAASAVeadtdlatddveddtqggtegatatatatistkpkkgkaalplkrdrmsstkftETAEAHfrlnidpkyndqqlratvslpkgtgkSVKVAVLAQGEKfneaknagadlvggdDLIEQIKGGFMefdkliaspDMMVKVASLgkilgprglmpnpkagtvttnIPQAIEEFKKGkveyradktgivhipfgkadfsedDLLINFLAAVKSIeankpkgakgvyWKSAYICSSMGPSIRLNIKEMLdyklpsnf
matcgttpssLMLTYAATPVHPQDLTPSLSLLSFKPSKTAAFSLctnlsvrggerraskwlDLYPLRQNKNGLPGHMLAAASAVEADTDLATDDVeddtqggtegatatatatistkpkkgkaalplkrdrmssTKFTetaeahfrlnidpkyndQQLRATvslpkgtgkSVKVAVLAQGEKfneaknagadlvgGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSieankpkgakgvyWKSAYICSSMGPSIRLNIKEMLDYKLPSNF
MATCGTTPSSLMLTYAATPVHPQDltpslsllsfkpsktAAFSLCTNLSVRGGERRASKWLDLYPLRQNKNGLPGHMLAAASaveadtdlatddveddtqggtegatatatatISTkpkkgkaalplkRDRMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSNF
************LTYAA***********LSLLSFKPSKTAAFSLCTNLSVRGGERRASKWLDLYPLRQN***************************************************************************FRLNI**********************VKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPN*KAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD*******
***********MLTYAATPVHPQDLTPSLSLLSFKPSKTAAFSLCTN****************************HMLAAAS*********************************TKPKKGKAALPLKRDRMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDY******
********SSLMLTYAATPVHPQDLTPSLSLLSFKPSKTAAFSLCTNLSVRGGERRASKWLDLYPLRQNKNGLPGHMLAAASAVEADTDLATDDVEDDTQGGTEGATATATAT****************DRMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSNF
**********L***YA**PVHPQDLTPSLSLLSFKPSKTAAFSLCTNLSVRGGERRASKWLDLYPLRQNKNGLPGHMLAAASAVE*****************TEGATATATATISTKPKKGKAALPLKRDRMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATCGTTPSSLMLTYAATPVHPQDLTPSLSLLSFKPSKTAAFSLCTNLSVRGGERRASKWLDLYPLRQNKNGLPGHMLAAASAVEADTDLATDDVEDDTQGGTEGATATATATISTKPKKGKAALPLKRDRMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSNF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query337 2.2.26 [Sep-21-2011]
Q9LY66346 50S ribosomal protein L1, yes no 0.925 0.901 0.629 1e-116
Q9LE95352 50S ribosomal protein L1, N/A no 0.952 0.911 0.587 1e-107
B0JNQ5237 50S ribosomal protein L1 yes no 0.661 0.940 0.589 2e-74
Q8DM27237 50S ribosomal protein L1 yes no 0.655 0.932 0.581 5e-74
O78413234 50S ribosomal protein L1, yes no 0.640 0.923 0.608 9e-74
Q8YLJ7238 50S ribosomal protein L1 yes no 0.596 0.844 0.621 4e-73
Q3MA18238 50S ribosomal protein L1 yes no 0.596 0.844 0.621 6e-73
B0CAD0236 50S ribosomal protein L1 yes no 0.602 0.860 0.610 7e-72
P36236238 50S ribosomal protein L1 N/A no 0.605 0.857 0.607 7e-72
Q31QK4237 50S ribosomal protein L1 yes no 0.623 0.886 0.601 2e-71
>sp|Q9LY66|RK1_ARATH 50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1 Back     alignment and function desciption
 Score =  417 bits (1072), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/367 (62%), Positives = 259/367 (70%), Gaps = 55/367 (14%)

Query: 1   MATCGTTPSSLMLTYAATPVHPQDLTPSLSLLSFKPSKTAAFSLCTNLSVRGGER-RASK 59
           MA C T  SSLML YAA     QDLTP+ SL SF  S+    S    L + GG R R   
Sbjct: 1   MAACATH-SSLMLAYAAASTRSQDLTPTPSLFSFASSRPNHLSF--PLLLLGGSRDRRCA 57

Query: 60  WLDLYPLRQNKNGLPGHMLAAASAVEADTDLATDDVEDDTQGGTEGATATATATIST-KP 118
            +D    R + +          SAV A+ DL   D E+D +        TATA +   KP
Sbjct: 58  AID----RASNHKF------IVSAVAAEADL---DTEEDLE-------QTATAVLDPPKP 97

Query: 119 KKGKAALPLKRDRMSS------------------------------TKFTETAEAHFRLN 148
           KKGKAAL LKRDR  S                              T+F E+ EAHFRLN
Sbjct: 98  KKGKAALVLKRDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLN 157

Query: 149 IDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFM 208
           IDPKYNDQQLRATVSLPKGTG++V VAVLAQGEK +EAK+AGAD+VG DDLIEQIKGGFM
Sbjct: 158 IDPKYNDQQLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFM 217

Query: 209 EFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTG 268
           EFDKLIASPDMMVKVA LGKILGPRGLMPNPKAGTVT NIPQAIEEFKKGKVE+RADKTG
Sbjct: 218 EFDKLIASPDMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTG 277

Query: 269 IVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 328
           IVHIPFGK +F+E+DLLINFLAAVKS+E NKPKGAKGVYWKSA+ICSSMGPSI+LNI+EM
Sbjct: 278 IVHIPFGKVNFTEEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREM 337

Query: 329 LDYKLPS 335
           +D+K P+
Sbjct: 338 IDFKPPT 344
This protein binds directly to 23S ribosomal RNA.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LE95|RK1_SPIOL 50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1 Back     alignment and function description
>sp|B0JNQ5|RL1_MICAN 50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) GN=rplA PE=3 SV=1 Back     alignment and function description
>sp|Q8DM27|RL1_THEEB 50S ribosomal protein L1 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplA PE=3 SV=1 Back     alignment and function description
>sp|O78413|RK1_GUITH 50S ribosomal protein L1, chloroplastic OS=Guillardia theta GN=rpl1 PE=3 SV=1 Back     alignment and function description
>sp|Q8YLJ7|RL1_NOSS1 50S ribosomal protein L1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rplA PE=3 SV=1 Back     alignment and function description
>sp|Q3MA18|RL1_ANAVT 50S ribosomal protein L1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplA PE=3 SV=1 Back     alignment and function description
>sp|B0CAD0|RL1_ACAM1 50S ribosomal protein L1 OS=Acaryochloris marina (strain MBIC 11017) GN=rplA PE=3 SV=1 Back     alignment and function description
>sp|P36236|RL1_SYNY3 50S ribosomal protein L1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rplA PE=3 SV=1 Back     alignment and function description
>sp|Q31QK4|RL1_SYNE7 50S ribosomal protein L1 OS=Synechococcus elongatus (strain PCC 7942) GN=rplA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
255553460360 50S ribosomal protein L1p, putative [Ric 0.973 0.911 0.670 1e-127
224055100355 predicted protein [Populus trichocarpa] 0.952 0.904 0.657 1e-122
118489924355 unknown [Populus trichocarpa x Populus d 0.952 0.904 0.654 1e-122
356531651345 PREDICTED: 50S ribosomal protein L1, chl 0.934 0.913 0.647 1e-120
449488819360 PREDICTED: 50S ribosomal protein L1, chl 0.946 0.886 0.638 1e-117
118486868355 unknown [Populus trichocarpa] 0.922 0.876 0.648 1e-117
449436333360 PREDICTED: 50S ribosomal protein L1, chl 0.946 0.886 0.635 1e-116
224106139329 predicted protein [Populus trichocarpa] 0.845 0.866 0.629 1e-115
7572940346 L1 protein [Arabidopsis thaliana] 0.925 0.901 0.629 1e-114
15229443346 50S ribosomal protein L1 [Arabidopsis th 0.925 0.901 0.629 1e-114
>gi|255553460|ref|XP_002517771.1| 50S ribosomal protein L1p, putative [Ricinus communis] gi|223543043|gb|EEF44578.1| 50S ribosomal protein L1p, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 246/367 (67%), Positives = 273/367 (74%), Gaps = 39/367 (10%)

Query: 1   MATCGTTPSSLMLTYAATPVHPQDLTPSLSLLSFKPSKTAAFSLCTNLSVRGGERRASKW 60
           MATC ++PSSLMLTY A+ VHPQDLTPSL  LSFKP     F L        G+R++SK 
Sbjct: 1   MATCTSSPSSLMLTYGASTVHPQDLTPSL--LSFKPK---TFFLNPLALGSNGDRKSSKS 55

Query: 61  LDLYPLRQNKNG-LPGHMLAAASAVEADTDLATDDVEDDTQGGTEGATATATATISTKPK 119
            + Y  +  K G   G      +A  A      DDVE+  +GG     ATAT    +KPK
Sbjct: 56  FNFYTQKDAKIGTCGGGGGVVVAAALAAEAEVADDVEEREEGGD---VATATVAAPSKPK 112

Query: 120 KGKAALPLKRDR------------------------------MSSTKFTETAEAHFRLNI 149
           KGKAALPLKRDR                              M+++KF ETAEAHFRLNI
Sbjct: 113 KGKAALPLKRDRARSKRFLEIQKLRENKQEYDLQTAISLLKQMATSKFVETAEAHFRLNI 172

Query: 150 DPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFME 209
           DPKYNDQQLRATV+LPKGTG++VKVAVL QGEKF+EAKNAGAD+VGG+DLIEQIKGGFM+
Sbjct: 173 DPKYNDQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADMVGGEDLIEQIKGGFMD 232

Query: 210 FDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGI 269
           FDKLIASPDMM KVASLGKILGPRGLMPNPKAGTV TNIPQAI EFKKGKVEYRADKTGI
Sbjct: 233 FDKLIASPDMMPKVASLGKILGPRGLMPNPKAGTVATNIPQAIAEFKKGKVEYRADKTGI 292

Query: 270 VHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 329
           VHIPFGKADFSEDDLL+N  AA+KSIE NKP GAKGVYWKSA+ICSSMGPSIRLNI+EML
Sbjct: 293 VHIPFGKADFSEDDLLVNLHAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIREML 352

Query: 330 DYKLPSN 336
           +YKLPSN
Sbjct: 353 EYKLPSN 359

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224055100|ref|XP_002298416.1| predicted protein [Populus trichocarpa] gi|222845674|gb|EEE83221.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118489924|gb|ABK96759.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|356531651|ref|XP_003534390.1| PREDICTED: 50S ribosomal protein L1, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|449488819|ref|XP_004158181.1| PREDICTED: 50S ribosomal protein L1, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|118486868|gb|ABK95268.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449436333|ref|XP_004135947.1| PREDICTED: 50S ribosomal protein L1, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224106139|ref|XP_002314057.1| predicted protein [Populus trichocarpa] gi|222850465|gb|EEE88012.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|7572940|emb|CAA62364.1| L1 protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15229443|ref|NP_191908.1| 50S ribosomal protein L1 [Arabidopsis thaliana] gi|75311693|sp|Q9LY66.1|RK1_ARATH RecName: Full=50S ribosomal protein L1, chloroplastic; AltName: Full=CL1; Flags: Precursor gi|7573332|emb|CAB87802.1| chloroplast ribosomal L1-like protein [Arabidopsis thaliana] gi|15450737|gb|AAK96640.1| AT3g63490/MAA21_120 [Arabidopsis thaliana] gi|16649119|gb|AAL24411.1| chloroplast ribosomal L1-like protein [Arabidopsis thaliana] gi|22137008|gb|AAM91349.1| At3g63490/MAA21_120 [Arabidopsis thaliana] gi|24899727|gb|AAN65078.1| chloroplast ribosomal L1-like protein [Arabidopsis thaliana] gi|332646971|gb|AEE80492.1| 50S ribosomal protein L1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
TAIR|locus:2087388346 EMB3126 "EMBRYO DEFECTIVE 3126 0.602 0.586 0.852 1.1e-95
TIGR_CMR|CJE_0525233 CJE_0525 "ribosomal protein L1 0.596 0.862 0.507 4e-51
TIGR_CMR|DET_0992237 DET_0992 "ribosomal protein L1 0.581 0.827 0.505 2.8e-50
TIGR_CMR|CHY_2322231 CHY_2322 "ribosomal protein L1 0.572 0.835 0.518 5.8e-50
TIGR_CMR|GSU_2866234 GSU_2866 "ribosomal protein L1 0.572 0.824 0.523 5.8e-50
UNIPROTKB|Q06797232 rplA "50S ribosomal protein L1 0.575 0.836 0.494 7.4e-50
TIGR_CMR|BA_0098230 BA_0098 "ribosomal protein L1" 0.587 0.860 0.484 9.5e-50
TIGR_CMR|SPO_3513232 SPO_3513 "ribosomal protein L1 0.572 0.831 0.492 4.7e-48
TIGR_CMR|CBU_0227232 CBU_0227 "ribosomal protein L1 0.569 0.827 0.489 1.4e-46
UNIPROTKB|P96932235 rplA "50S ribosomal protein L1 0.560 0.804 0.497 7.9e-46
TAIR|locus:2087388 EMB3126 "EMBRYO DEFECTIVE 3126" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 914 (326.8 bits), Expect = 1.1e-95, Sum P(2) = 1.1e-95
 Identities = 173/203 (85%), Positives = 193/203 (95%)

Query:   133 SSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGAD 192
             ++T+F E+ EAHFRLNIDPKYNDQQLRATVSLPKGTG++V VAVLAQGEK +EAK+AGAD
Sbjct:   142 ANTRFVESVEAHFRLNIDPKYNDQQLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGAD 201

Query:   193 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAI 252
             +VG DDLIEQIKGGFMEFDKLIASPDMMVKVA LGKILGPRGLMPNPKAGTVT NIPQAI
Sbjct:   202 IVGSDDLIEQIKGGFMEFDKLIASPDMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQAI 261

Query:   253 EEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAY 312
             EEFKKGKVE+RADKTGIVHIPFGK +F+E+DLLINFLAAVKS+E NKPKGAKGVYWKSA+
Sbjct:   262 EEFKKGKVEFRADKTGIVHIPFGKVNFTEEDLLINFLAAVKSVETNKPKGAKGVYWKSAH 321

Query:   313 ICSSMGPSIRLNIKEMLDYKLPS 335
             ICSSMGPSI+LNI+EM+D+K P+
Sbjct:   322 ICSSMGPSIKLNIREMIDFKPPT 344
GO:0003723 "RNA binding" evidence=IEA
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005840 "ribosome" evidence=ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0005634 "nucleus" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA
GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA
GO:0009902 "chloroplast relocation" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0015979 "photosynthesis" evidence=RCA
GO:0016226 "iron-sulfur cluster assembly" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0034660 "ncRNA metabolic process" evidence=RCA
GO:0042793 "transcription from plastid promoter" evidence=RCA
GO:0045036 "protein targeting to chloroplast" evidence=RCA
TIGR_CMR|CJE_0525 CJE_0525 "ribosomal protein L1" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0992 DET_0992 "ribosomal protein L1" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2322 CHY_2322 "ribosomal protein L1" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2866 GSU_2866 "ribosomal protein L1" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q06797 rplA "50S ribosomal protein L1" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0098 BA_0098 "ribosomal protein L1" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3513 SPO_3513 "ribosomal protein L1" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0227 CBU_0227 "ribosomal protein L1" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|P96932 rplA "50S ribosomal protein L1" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LY66RK1_ARATHNo assigned EC number0.62940.92580.9017yesno
Q7U3T7RL1_SYNPXNo assigned EC number0.58850.61720.8851yesno
O78413RK1_GUITHNo assigned EC number0.60820.64090.9230yesno
Q8DM27RL1_THEEBNo assigned EC number0.58100.65570.9324yesno
Q5N3N8RL1_SYNP6No assigned EC number0.59710.62310.8860yesno
B0CAD0RL1_ACAM1No assigned EC number0.61080.60230.8601yesno
Q9LE95RK1_SPIOLNo assigned EC number0.58740.95250.9119N/Ano
Q31QK4RL1_SYNE7No assigned EC number0.60180.62310.8860yesno
Q119S7RL1_TRIEINo assigned EC number0.56360.64980.9201yesno
B0JNQ5RL1_MICANNo assigned EC number0.58920.66170.9409yesno
Q3AUJ6RL1_SYNS9No assigned EC number0.59020.60530.8680yesno
Q2JM50RL1_SYNJBNo assigned EC number0.57000.63200.9025yesno
Q3AGT0RL1_SYNSCNo assigned EC number0.60280.61720.8851yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
CHL00129229 CHL00129, rpl1, ribosomal protein L1; Reviewed 1e-121
PRK05424230 PRK05424, rplA, 50S ribosomal protein L1; Validate 1e-115
TIGR01169227 TIGR01169, rplA_bact, ribosomal protein L1, bacter 1e-105
COG0081228 COG0081, RplA, Ribosomal protein L1 [Translation, 1e-92
cd00403208 cd00403, Ribosomal_L1, Ribosomal protein L1 3e-74
pfam00687200 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10 2e-66
PRK04203215 PRK04203, rpl1P, 50S ribosomal protein L1P; Review 3e-32
TIGR01170141 TIGR01170, rplA_mito, ribosomal protein L1, mitoch 2e-24
PTZ00029216 PTZ00029, PTZ00029, 60S ribosomal protein L10a; Pr 7e-11
>gnl|CDD|177051 CHL00129, rpl1, ribosomal protein L1; Reviewed Back     alignment and domain information 
 Score =  348 bits (896), Expect = e-121
 Identities = 134/216 (62%), Positives = 170/216 (78%), Gaps = 1/216 (0%)

Query: 114 ISTKPKKGKAALPLKRDRMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVK 173
           I  K    + A+ L ++  ++ KF ETAEAH  LNIDPKY DQQLR TV+LPKGTGK+++
Sbjct: 15  IEKKLYSPEEAINLLKE-TATAKFIETAEAHISLNIDPKYADQQLRTTVTLPKGTGKTIR 73

Query: 174 VAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPR 233
           +AVL   EK  EAKNAGAD+VG DDLIE+I  G ++FD LIA+PDMM K+A LG++LGPR
Sbjct: 74  IAVLTNEEKITEAKNAGADIVGSDDLIEEITKGNLDFDLLIATPDMMPKLAKLGRVLGPR 133

Query: 234 GLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVK 293
           GLMP+PK+GTVTT++  AI EFKKGK+EYRADKTGIVH+ FGK++F+E+DLL N  A  +
Sbjct: 134 GLMPSPKSGTVTTDLASAINEFKKGKLEYRADKTGIVHVLFGKSNFTEEDLLENLQAIYE 193

Query: 294 SIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 329
           SIE N+P G KG YWKS YICS+MGPSI+++I  + 
Sbjct: 194 SIEQNRPSGVKGKYWKSFYICSTMGPSIQIDISLLR 229

Length = 229
>gnl|CDD|180071 PRK05424, rplA, 50S ribosomal protein L1; Validated Back     alignment and domain information
>gnl|CDD|211630 TIGR01169, rplA_bact, ribosomal protein L1, bacterial/chloroplast Back     alignment and domain information
>gnl|CDD|223159 COG0081, RplA, Ribosomal protein L1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238235 cd00403, Ribosomal_L1, Ribosomal protein L1 Back     alignment and domain information
>gnl|CDD|216061 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10e family Back     alignment and domain information
>gnl|CDD|235254 PRK04203, rpl1P, 50S ribosomal protein L1P; Reviewed Back     alignment and domain information
>gnl|CDD|233298 TIGR01170, rplA_mito, ribosomal protein L1, mitochondrial Back     alignment and domain information
>gnl|CDD|185405 PTZ00029, PTZ00029, 60S ribosomal protein L10a; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 337
CHL00129229 rpl1 ribosomal protein L1; Reviewed 100.0
COG0081228 RplA Ribosomal protein L1 [Translation, ribosomal 100.0
TIGR01169227 rplA_bact ribosomal protein L1, bacterial/chloropl 100.0
PRK05424230 rplA 50S ribosomal protein L1; Validated 100.0
PRK04203215 rpl1P 50S ribosomal protein L1P; Reviewed 100.0
PTZ00225214 60S ribosomal protein L10a; Provisional 100.0
PTZ00029216 60S ribosomal protein L10a; Provisional 100.0
KOG1569323 consensus 50S ribosomal protein L1 [Translation, r 100.0
cd00403208 Ribosomal_L1 Ribosomal protein L1. The L1 protein, 100.0
PF00687220 Ribosomal_L1: Ribosomal protein L1p/L10e family; I 100.0
TIGR01170141 rplA_mito ribosomal protein L1, mitochondrial. Thi 100.0
KOG1570218 consensus 60S ribosomal protein L10A [Translation, 99.92
KOG1685343 consensus Uncharacterized conserved protein [Funct 99.84
PF13003133 MRL1: Ribosomal protein L1; InterPro: IPR024663 Th 97.12
>CHL00129 rpl1 ribosomal protein L1; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=3.5e-59  Score=434.34  Aligned_cols=212  Identities=63%  Similarity=1.026  Sum_probs=203.1

Q ss_pred             CCccccccccccccccCCCCCCcceEEEEEEeccCCCCCCCceeEEEECCCCCCCceEEEEEcCcccHHHHHHcCCCeec
Q 019646          116 TKPKKGKAALPLKRDRMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVG  195 (337)
Q Consensus       116 ~~~~k~~~al~L~~e~~~~~kF~EsVel~v~LnidpkK~~~~irg~V~LPh~~~k~~kIcVfa~de~~eeAkeaGAd~VG  195 (337)
                      .+.+....|++++++ ...++|+||||++|+|++|++++++++||+|.|||+++++.+|||||+++.+++|+++||++||
T Consensus        17 ~~~y~l~eAi~~~k~-~~~~kF~esvel~i~L~id~kk~~~~irg~v~LP~~~gk~~kV~Vfa~~~~~~eAk~aGad~vg   95 (229)
T CHL00129         17 KKLYSPEEAINLLKE-TATAKFIETAEAHISLNIDPKYADQQLRTTVTLPKGTGKTIRIAVLTNEEKITEAKNAGADIVG   95 (229)
T ss_pred             ccccCHHHHHHHHHH-hCcCCCCccEEEEEEECCCCCCCCCceeeEEECCCCCCCCcEEEEECChHhHHHHHHcCCCEeC
Confidence            445566688888876 6789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHCCCCcccEEEeCchhHHHHHhhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCeEEEEEcCCCeeEEeec
Q 019646          196 GDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFG  275 (337)
Q Consensus       196 ~~eLIekIk~~~~~fD~fLAt~~imp~L~~LgKiLGpRgkmP~pk~GTvt~di~~~Ie~~k~G~v~~r~~k~g~i~v~IG  275 (337)
                      ++||+++|+++|.+||+|||+|++||+|++|||+||||||||+|+.||+++|+.++|+++++|+++||+++.+++|++||
T Consensus        96 ~edLi~~ik~~~~~fd~~iAt~d~m~~l~kLgriLGprGlMP~pk~gTvt~di~~~V~~~k~G~v~~r~dk~g~i~~~VG  175 (229)
T CHL00129         96 SDDLIEEITKGNLDFDLLIATPDMMPKLAKLGRVLGPRGLMPSPKSGTVTTDLASAINEFKKGKLEYRADKTGIVHVLFG  175 (229)
T ss_pred             HHHHHHHHHcCcccCCEEEECHHHHHHHHHhcCcccccCCCCCCCCCCccccHHHHHHHHhcCcEEEEecCCcEEEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHhHHHHHHHHHHhCCCCCCCceeeEEEEecCCCCcEEEecccc
Q 019646          276 KADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM  328 (337)
Q Consensus       276 ~~~ms~eqI~ENI~Avi~~l~~~~Pkg~k~~~Iksi~IkSTmGpal~I~~~~~  328 (337)
                      +++|++|||.||+.+++++|.+++|.+|++.||+++||||||||+++|++.++
T Consensus       176 ~~~m~~~~l~eNi~a~l~~i~~~~p~~~kg~~ik~v~issTMGp~v~i~~~~~  228 (229)
T CHL00129        176 KSNFTEEDLLENLQAIYESIEQNRPSGVKGKYWKSFYICSTMGPSIQIDISLL  228 (229)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhCcccccCceEEEEEEECCCCCCEEeccccc
Confidence            99999999999999999999999999999999999999999999999998765

>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast Back     alignment and domain information
>PRK05424 rplA 50S ribosomal protein L1; Validated Back     alignment and domain information
>PRK04203 rpl1P 50S ribosomal protein L1P; Reviewed Back     alignment and domain information
>PTZ00225 60S ribosomal protein L10a; Provisional Back     alignment and domain information
>PTZ00029 60S ribosomal protein L10a; Provisional Back     alignment and domain information
>KOG1569 consensus 50S ribosomal protein L1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00403 Ribosomal_L1 Ribosomal protein L1 Back     alignment and domain information
>PF00687 Ribosomal_L1: Ribosomal protein L1p/L10e family; InterPro: IPR002143 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>TIGR01170 rplA_mito ribosomal protein L1, mitochondrial Back     alignment and domain information
>KOG1570 consensus 60S ribosomal protein L10A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1685 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13003 MRL1: Ribosomal protein L1; InterPro: IPR024663 This entry represents a ribosomal protein L1 domain found mainly in chordates Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
3bbo_D352 Homology Model For The Spinach Chloroplast 50s Subu 1e-100
2j01_C229 Structure Of The Thermus Thermophilus 70s Ribosome 2e-58
1ml5_c228 Crystal Structure Of The Ribosome At 5.5 A Resoluti 2e-58
2hgj_C229 Fitting Of Components With Known Structure Into An 2e-58
4f9t_A229 Ribosomal Protein L1 From Thermus Thermophilus With 2e-58
3umy_A228 Crystal Structure Of Mutant Ribosomal Protein T217a 2e-58
3zvp_C229 Crystal Structure Of The Hybrid State Of Ribosome I 3e-58
3u42_A229 Mutant Ribosomal Protein L1 From Thermus Thermophil 4e-58
487d_H224 Seven Ribosomal Proteins Fitted To A Cryo-Electron 4e-58
1ad2_A228 Ribosomal Protein L1 Mutant With Serine 179 Replace 4e-58
3tg8_A228 Mutant Ribosomal Protein L1 Lacking Ala158 From The 3e-57
2v49_C229 Structure Of The Ribosome Recycling Factor Bound To 4e-57
2hw8_A228 Structure Of Ribosomal Protein L1-Mrna Complex At 2 3e-56
1zho_A228 The Structure Of A Ribosomal Protein L1 In Complex 4e-56
3qoy_A242 Crystal Structure Of Ribosomal Protein L1 From Aqui 7e-55
3fin_C191 T. Thermophilus 70s Ribosome In Complex With Mrna, 3e-49
2rdo_9233 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = 2e-44
3fik_5234 Ternary Complex-Bound E.Coli 70s Ribosome. This Ent 2e-44
2gya_2222 Structure Of The 50s Subunit Of A Pre-Translocation 3e-44
3j21_A216 Promiscuous Behavior Of Proteins In Archaeal Riboso 3e-16
2ov7_A137 The First Domain Of The Ribosomal Protein L1 From T 8e-16
1dwu_A213 Ribosomal Protein L1 Length = 213 9e-15
2zkr_5212 Structure Of A Mammalian Ribosomal 60s Subunit With 2e-10
1cjs_A219 Crystal Structure Of Ribosomal Protein L1 From Meth 4e-10
1mzp_A217 Structure Of The L1 Protuberance In The Ribosome Le 7e-09
1u63_A219 The Structure Of A Ribosomal Protein L1-Mrna Comple 3e-08
3e1b_Z213 Structure Of The 50s Subunit Of E. Coli Ribosome In 2e-06
>pdb|3BBO|D Chain D, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 352 Back     alignment and structure 
Iteration: 1

 Score =  360 bits (923), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 168/206 (81%), Positives = 188/206 (91%)
Query: 131 RMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAG 190
           +MSSTKF ETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK+VK+AVLAQG+K +EAK AG
Sbjct: 146 QMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAG 205
Query: 191 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQ 250
           AD+VGG++LIEQIKGGFM+FDKLIA+ DMM KVASLG+ILGPRGLMP PKAGTVT N+ Q
Sbjct: 206 ADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVASLGRILGPRGLMPTPKAGTVTPNVAQ 265
Query: 251 AIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKS 310
           A+EEFKKGKVE+R DKTGIVHIPFGK +F E+DLLIN  A +KS+E NKP GAKGVYWKS
Sbjct: 266 AVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKS 325
Query: 311 AYICSSMGPSIRLNIKEMLDYKLPSN 336
           A+I SSMGPSIRLNI+EMLDYK PSN
Sbjct: 326 AHISSSMGPSIRLNIREMLDYKPPSN 351
>pdb|2J01|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 229 Back     alignment and structure
>pdb|1ML5|CC Chain c, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 228 Back     alignment and structure
>pdb|2HGJ|C Chain C, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgi. Length = 229 Back     alignment and structure
>pdb|4F9T|A Chain A, Ribosomal Protein L1 From Thermus Thermophilus With Substitution Thr217ala Length = 229 Back     alignment and structure
>pdb|3UMY|A Chain A, Crystal Structure Of Mutant Ribosomal Protein T217a Tthl1 In Complex With 80nt 23s Rna From Thermus Thermophilus Length = 228 Back     alignment and structure
>pdb|3ZVP|C Chain C, Crystal Structure Of The Hybrid State Of Ribosome In Complex With The Guanosine Triphosphatase Release Factor 3 Length = 229 Back     alignment and structure
>pdb|3U42|A Chain A, Mutant Ribosomal Protein L1 From Thermus Thermophilus With Threonine 217 Replaced By Valine Length = 229 Back     alignment and structure
>pdb|487D|H Chain H, Seven Ribosomal Proteins Fitted To A Cryo-Electron Microscopic Map Of The Large 50s Subunit At 7.5 Angstroms Resolution Length = 224 Back     alignment and structure
>pdb|1AD2|A Chain A, Ribosomal Protein L1 Mutant With Serine 179 Replaced By Cysteine Length = 228 Back     alignment and structure
>pdb|3TG8|A Chain A, Mutant Ribosomal Protein L1 Lacking Ala158 From Thermus Thermophilus Length = 228 Back     alignment and structure
>pdb|2V49|C Chain C, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 4 Of 4). This File Contains The 50s Subunit Of Molecule 2 Length = 229 Back     alignment and structure
>pdb|2HW8|A Chain A, Structure Of Ribosomal Protein L1-Mrna Complex At 2.1 Resolution Length = 228 Back     alignment and structure
>pdb|1ZHO|A Chain A, The Structure Of A Ribosomal Protein L1 In Complex With Mrna Length = 228 Back     alignment and structure
>pdb|3QOY|A Chain A, Crystal Structure Of Ribosomal Protein L1 From Aquifex Aeolicus Length = 242 Back     alignment and structure
>pdb|3FIN|C Chain C, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 191 Back     alignment and structure
>pdb|2RDO|9 Chain 9, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = 233 Back     alignment and structure
>pdb|3FIK|5 Chain 5, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. Length = 234 Back     alignment and structure
>pdb|2GYA|2 Chain 2, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 222 Back     alignment and structure
>pdb|3J21|A Chain A, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 216 Back     alignment and structure
>pdb|2OV7|A Chain A, The First Domain Of The Ribosomal Protein L1 From Thermus Thermophilus Length = 137 Back     alignment and structure
>pdb|1DWU|A Chain A, Ribosomal Protein L1 Length = 213 Back     alignment and structure
>pdb|2ZKR|5 Chain 5, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 212 Back     alignment and structure
>pdb|1CJS|A Chain A, Crystal Structure Of Ribosomal Protein L1 From Methanococcus Jannaschii Length = 219 Back     alignment and structure
>pdb|1MZP|A Chain A, Structure Of The L1 Protuberance In The Ribosome Length = 217 Back     alignment and structure
>pdb|1U63|A Chain A, The Structure Of A Ribosomal Protein L1-Mrna Complex Length = 219 Back     alignment and structure
>pdb|3E1B|Z Chain Z, Structure Of The 50s Subunit Of E. Coli Ribosome In Pre-Accommodation State Length = 213 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
3bbo_D352 Ribosomal protein L1; large ribosomal subunit, spi 1e-123
2wwq_5234 50S ribosomal protein L1; ribosomal protein, ribon 1e-105
4f9t_A229 50S ribosomal protein L1; rossman fold, RNA; HET: 1e-105
3qoy_A242 50S ribosomal protein L1; beta-alpha-beta, structu 1e-104
2ftc_A189 Mitochondrial ribosomal protein L1; mitochondrial 1e-90
1i2a_A219 50S ribosomal protein L1P; primary rRNA-binding pr 6e-84
1mzp_A217 50S ribosomal protein L1P; ribosome, RNA-protein c 2e-81
2zkr_5212 60S ribosomal protein L10A; protein-RNA complex, 6 1e-79
3o58_A217 L10A, 60S ribosomal protein L1; ribosomal RNA and 9e-72
3iz5_A216 60S ribosomal protein L1 (L1P); eukaryotic ribosom 4e-71
2ov7_A137 50S ribosomal protein L1; 2.30A {Thermus thermophi 3e-54
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 352 Back     alignment and structure
 Score =  357 bits (917), Expect = e-123
 Identities = 210/361 (58%), Positives = 242/361 (67%), Gaps = 43/361 (11%)

Query: 6   TTPSSLMLTYAATPVHPQDLTPSLSLLSFKPSKTAAFSLCTNLSVRGGERRASKWLDLYP 65
             P SL L YA++    Q          FKP      SLC  L++   ER   KW+D   
Sbjct: 4   AAPPSLSLCYASSSFQYQQDPSFQ--THFKP-LLLNSSLCR-LTLNQRERSCLKWVDFTS 59

Query: 66  LRQNKNGLPGHMLAAASAVEADTDLATDDVEDDTQGGTEGATATATATISTKPKKGKAAL 125
            +Q+   +   +LAA +A         +    D +     +   AT    TKPKKGKAAL
Sbjct: 60  QKQSPKSVSFRVLAAVAA---------EAEVADMEEEEGESGGVATLPSPTKPKKGKAAL 110

Query: 126 PLKRDR------------------------------MSSTKFTETAEAHFRLNIDPKYND 155
           PLK DR                              MSSTKF ETAEAHFRLNIDPKYND
Sbjct: 111 PLKSDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYND 170

Query: 156 QQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIA 215
           QQLRATVSLPKGTGK+VK+AVLAQG+K +EAK AGAD+VGG++LIEQIKGGFM+FDKLIA
Sbjct: 171 QQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIA 230

Query: 216 SPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFG 275
           + DMM KVASLG+ILGPRGLMP PKAGTVT N+ QA+EEFKKGKVE+R DKTGIVHIPFG
Sbjct: 231 TSDMMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFG 290

Query: 276 KADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPS 335
           K +F E+DLLIN  A +KS+E NKP GAKGVYWKSA+I SSMGPSIRLNI+EMLDYK PS
Sbjct: 291 KLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPS 350

Query: 336 N 336
           N
Sbjct: 351 N 351
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2 Length = 234 Back     alignment and structure
>4f9t_A 50S ribosomal protein L1; rossman fold, RNA; HET: MPD; 1.46A {Thermus thermophilus} PDB: 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 2hw8_A 2j01_C 2j03_C 2jl6_C 2jl8_C 2om7_K* 2v47_C ... Length = 229 Back     alignment and structure
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus} Length = 242 Back     alignment and structure
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 189 Back     alignment and structure
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A Length = 219 Back     alignment and structure
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z Length = 217 Back     alignment and structure
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 212 Back     alignment and structure
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 3izs_A 1s1i_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A Length = 217 Back     alignment and structure
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A Length = 137 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
3bbo_D352 Ribosomal protein L1; large ribosomal subunit, spi 100.0
3u42_A229 50S ribosomal protein L1; rossmann fold, rRNA bind 100.0
2wwq_5234 50S ribosomal protein L1; ribosomal protein, ribon 100.0
3qoy_A242 50S ribosomal protein L1; beta-alpha-beta, structu 100.0
3j21_A216 50S ribosomal protein L1P; archaea, archaeal, KINK 100.0
2zkr_5212 60S ribosomal protein L10A; protein-RNA complex, 6 100.0
1i2a_A219 50S ribosomal protein L1P; primary rRNA-binding pr 100.0
1mzp_A217 50S ribosomal protein L1P; ribosome, RNA-protein c 100.0
2ftc_A189 Mitochondrial ribosomal protein L1; mitochondrial 100.0
3iz5_A216 60S ribosomal protein L1 (L1P); eukaryotic ribosom 100.0
3o58_A217 L10A, 60S ribosomal protein L1; ribosomal RNA and 100.0
2ov7_A137 50S ribosomal protein L1; 2.30A {Thermus thermophi 99.97
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
Probab=100.00  E-value=9.1e-86  Score=639.03  Aligned_cols=320  Identities=65%  Similarity=0.976  Sum_probs=191.8

Q ss_pred             ccCCCCccceeeeccCCCCCCCCCCccccccc-ccCcccceeeecccccccccccccccccccccccCCCCCCcceeeec
Q 019646            3 TCGTTPSSLMLTYAATPVHPQDLTPSLSLLSF-KPSKTAAFSLCTNLSVRGGERRASKWLDLYPLRQNKNGLPGHMLAAA   81 (337)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (337)
                      +||++||||||||||+++| ||||||  |+|| +|..+ ..+||||+|+ +++|++.+|++||++++..++ ..-++|||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   74 (352)
T 3bbo_D            1 MATAAPPSLSLCYASSSFQ-YQQDPS--FQTHFKPLLL-NSSLCRLTLN-QRERSCLKWVDFTSQKQSPKS-VSFRVLAA   74 (352)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCccCchhHHHhhhhccch-hccCch--hhhhcCccch-hhhcchhhhc-ccccchhhhhhhhhhhhcCCC-cceEEeee
Confidence            5999999999999999999 999999  8898 77644 5579999998 889999999999999999888 66678999


Q ss_pred             ccccccccccCCCcccccCCCccCceeccccccCCCcccccccccccc--c----------------------------c
Q 019646           82 SAVEADTDLATDDVEDDTQGGTEGATATATATISTKPKKGKAALPLKR--D----------------------------R  131 (337)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~al~L~~--e----------------------------~  131 (337)
                      +|||++++    ++||+|.|   +..+... ++|.+|+|++.++.+.+  +                            .
T Consensus        75 ~~~~~~~~----~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~k~m~k~~K~~~~~~~~~d~~~~Y~l~EAi~llK~  146 (352)
T 3bbo_D           75 VAAEAEVA----DMEEEEGE---SGGVATL-PSPTKPKKGKAALPLKSDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQ  146 (352)
T ss_dssp             -------------------------------------------------CCCCCSSTTTTTSCCSSSCCCTTTTHHHHST
T ss_pred             hhhhhhhh----hHHHhhcc---CCccccc-cCCCCccccccccchhhhhhhhHHHHHHHhcccccCCCCHHHHHHHHHh
Confidence            99999998    33333322   2334444 49999999998876532  1                            1


Q ss_pred             CCCCCCcceEEEEEEeccCCCCCCCceeEEEECCCCCCCceEEEEEcCcccHHHHHHcCCCeeccHHHHHHHHCCCCccc
Q 019646          132 MSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFD  211 (337)
Q Consensus       132 ~~~~kF~EsVel~v~LnidpkK~~~~irg~V~LPh~~~k~~kIcVfa~de~~eeAkeaGAd~VG~~eLIekIk~~~~~fD  211 (337)
                      ...+||+||||++|+|++||++.++++||+|.|||++++..+||||++++++++|+++||++||++||+++|++++.+||
T Consensus       147 ~~~~KFdETVEl~I~L~vDpkk~dq~vRGtV~LPhgtgk~~kVcVfa~ge~~eeAk~AGAdvVG~edLikkIKkg~~dFD  226 (352)
T 3bbo_D          147 MSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFD  226 (352)
T ss_dssp             TCCSSSCCEECCEEEECSCTTSSTTCCEEEECCTTTSSSSSCEEEECCTTTTHHHHTTTCSEEECTTTHHHHTTTCCCCS
T ss_pred             ccccCCCceEEEEEEeCCCCcccccccceeecCCCCCCCccEEEEEeCchhHHHHHHcCCCccCHHHHHHHHHhchhhcC
Confidence            12789999999999999999999999999999999999999999999999899999999999999999999999999999


Q ss_pred             EEEeCchhHHHHHhhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCeEEEEEcCCCeeEEeecCCCCChHHHHHhHHHH
Q 019646          212 KLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAA  291 (337)
Q Consensus       212 ~fLAt~~imp~L~~LgKiLGpRgkmP~pk~GTvt~di~~~Ie~~k~G~v~~r~~k~g~i~v~IG~~~ms~eqI~ENI~Av  291 (337)
                      +|||+|+||++|++|||+||||||||+|+.|||+.||.++|+++++|+++||+++.+|+|++||+++|++|||.|||.++
T Consensus       227 ~fIAtpdmM~~lgrLGkiLGPRGlMPnPk~GTVt~Dva~aV~e~K~G~v~fR~dK~g~ihv~VGk~sfs~EqL~ENI~Av  306 (352)
T 3bbo_D          227 KLIATSDMMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFAT  306 (352)
T ss_dssp             EEEECSSSHHHHGGGGGTTTTTTCSCCTTTTCBSSCHHHHHTTTTTCCEEEECCSSCEECCCCEETTSCHHHHHHHHHHH
T ss_pred             EEEECHHHHHHHHhhcccccccCCCCCCcCCcccccHHHHHHHHHcCeeEEEeCCCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCceeeEEEEecCCCCcEEEeccccccccCCCC
Q 019646          292 VKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSN  336 (337)
Q Consensus       292 i~~l~~~~Pkg~k~~~Iksi~IkSTmGpal~I~~~~~~~~~~~~~  336 (337)
                      ++.|.+++|++|+|.||+++||||||||+++||.+++.+|+.|||
T Consensus       307 i~~L~k~kP~~~KG~yIksv~LkSTMGPgi~I~~~~l~d~~~p~~  351 (352)
T 3bbo_D          307 IKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN  351 (352)
T ss_dssp             HHHHHTTCCTTCCSCSEEEEECCBSSSCCCEECTTC---------
T ss_pred             HHHHHHhCcccccCceEEEEEEECCCCCCEEEEhhhcccccCCCC
Confidence            999999999999999999999999999999999999999999987
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ... Back     alignment and structure
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2 Back     alignment and structure
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus} Back     alignment and structure
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A Back     alignment and structure
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z Back     alignment and structure
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Back     alignment and structure
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A Back     alignment and structure
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 337
d1ad2a_224 e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermo 7e-65
d1mzpa_217 e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfo 2e-43
d1i2aa_212 e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Metha 2e-41
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus [TaxId: 274]} Length = 224 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Ribosomal protein L1
superfamily: Ribosomal protein L1
family: Ribosomal protein L1
domain: Ribosomal protein L1
species: Thermus thermophilus [TaxId: 274]

 Score =  202 bits (515), Expect = 7e-65
 Identities = 102/196 (52%), Positives = 145/196 (73%), Gaps = 1/196 (0%)

Query: 132 MSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGA 191
           +++ KF ET E H +L IDP+ +DQ +R TVSLP G GK V+V  +A+GEK  EA+ AGA
Sbjct: 28  LATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGA 87

Query: 192 DLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQ 250
           D VGG+++I++I  G+M+FD ++A+PD+M  V S LG+ILGPRGL+PNPKAGTV  NI +
Sbjct: 88  DYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGE 147

Query: 251 AIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKS 310
            I E K G++E+R DKTG +H P GKA F  + L  N  A ++++EA+KP+GAKG + +S
Sbjct: 148 IIREIKAGRIEFRNDKTGAIHAPVGKACFPPEKLADNIRAFIRALEAHKPEGAKGTFLRS 207

Query: 311 AYICSSMGPSIRLNIK 326
            Y+ ++MGPS+R+N  
Sbjct: 208 VYVTTTMGPSVRINPH 223
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 217 Back     information, alignment and structure
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 212 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
d1ad2a_224 Ribosomal protein L1 {Thermus thermophilus [TaxId: 100.0
d1mzpa_217 Ribosomal protein L1 {Archaeon Sulfolobus acidocal 100.0
d1i2aa_212 Ribosomal protein L1 {Archaeon Methanococcus janna 100.0
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Ribosomal protein L1
superfamily: Ribosomal protein L1
family: Ribosomal protein L1
domain: Ribosomal protein L1
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.2e-56  Score=412.13  Aligned_cols=212  Identities=49%  Similarity=0.838  Sum_probs=201.8

Q ss_pred             cCCCccccccccccccccCCCCCCcceEEEEEEeccCCCCCCCceeEEEECCCCCCCceEEEEEcCcccHHHHHHcCCCe
Q 019646          114 ISTKPKKGKAALPLKRDRMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADL  193 (337)
Q Consensus       114 ~~~~~~k~~~al~L~~e~~~~~kF~EsVel~v~LnidpkK~~~~irg~V~LPh~~~k~~kIcVfa~de~~eeAkeaGAd~  193 (337)
                      .+.+.+....|+.++++. ..++|+||||++|+|+++++++++++||+|.|||+.++..+|||||+++.+++|+++||++
T Consensus        11 d~~k~ysi~EAi~~lk~~-~~~kF~esvel~i~L~~~~~k~~~~i~g~v~LP~~~~k~~ki~v~~~~e~~~~Ak~aGa~~   89 (224)
T d1ad2a_          11 DPNKIYTIDEAAHLVKEL-ATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADY   89 (224)
T ss_dssp             CTTCCBCHHHHHHHHHTT-CCSSSCCEEEEEEEESSCTTCGGGCCEEEEECSSSCSTTSCEEEECCTHHHHHHHHTTCSE
T ss_pred             CccCCcCHHHHHHHHHHc-CCCCCCceEEEEEEEcccccccccccceeEEeccccccceeEEEecchHHHHHHHhcCccc
Confidence            445566777898888774 4689999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccHHHHHHHHCCCCcccEEEeCchhHHHHH-hhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCeEEEEEcCCCeeEE
Q 019646          194 VGGDDLIEQIKGGFMEFDKLIASPDMMVKVA-SLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHI  272 (337)
Q Consensus       194 VG~~eLIekIk~~~~~fD~fLAt~~imp~L~-~LgKiLGpRgkmP~pk~GTvt~di~~~Ie~~k~G~v~~r~~k~g~i~v  272 (337)
                      ||++||+++|++++.+||+|||++++||.|+ .|||+||||||||+|+.||++.|+.++|+++++|+++||.++.|++|+
T Consensus        90 vg~~eli~ki~~~~~~fd~~ia~~~~m~~v~~~lgriLGprGlMP~pk~Gtv~~di~~~v~~~k~g~v~~r~~k~g~i~~  169 (224)
T d1ad2a_          90 VGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHA  169 (224)
T ss_dssp             EECGGGHHHHHTTCCCCSEEEECGGGHHHHHHHHHHHHHHHTCSCCTTTTCBCSCHHHHHHHHHTTEEEEECCTTSEEEE
T ss_pred             cCcHHHHHHHhcCCccchhHHhHHHHHHHHHHhhhhccCcccCCCCCCCCCcchhHHHHHHHHhCCeEEEeeCCCceeee
Confidence            9999999999999999999999999999996 799999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCChHHHHHhHHHHHHHHHHhCCCCCCCceeeEEEEecCCCCcEEEecc
Q 019646          273 PFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK  326 (337)
Q Consensus       273 ~IG~~~ms~eqI~ENI~Avi~~l~~~~Pkg~k~~~Iksi~IkSTmGpal~I~~~  326 (337)
                      +||+++|++|||+|||.+++++|.+++|++|+|.||+++||||||||+++|+..
T Consensus       170 ~IG~~~m~~e~i~eNi~~~i~~i~~~~p~~~k~~~ik~v~l~sTmGp~~~id~~  223 (224)
T d1ad2a_         170 PVGKACFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPH  223 (224)
T ss_dssp             EEEETTSCHHHHHHHHHHHHHHHHTTCCTTCCSCSEEEEEEECTTSCCEEECTT
T ss_pred             eeccccCCHHHHHHHHHHHHHHHHHhCccccCCCeEeEEEEECCCCCCEEeCCC
Confidence            999999999999999999999999999999999999999999999999999864
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure