Citrus Sinensis ID: 019697

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
MDHSISSRSLSRSPSPSISPFNSKRMILNPVFHKFNFDSRNFEIKPLVSRQNRPVVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC
cccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccEEEcccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccEEccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccEEcccHHHHHHHHHcccEEEEcccccccHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHHcccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccHHHHHccccccccccc
ccccEEEEccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccccccEEccccccHHccccccccccccccccccEEcccccccccHHHHHHcccccccccccEEccccccccEEEccccEEEEEEEcccccccHHHHHHHHHHHHHHHccccEEEEEcccccccccccEEEccHHHHHHHHHccccEEEcccccccHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHcccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEccccHHHHHHHHHHHccccccc
mdhsissrslsrspspsispfnskrmilnpvfhkfnfdsrnfeikplvsrqnrpVVVAVRSsnqkvhndgfvledvphltnflpdlpsypnplkksqaYAVVKQtfvspedavaqniviqkdsprgvhfrragprekvyfksDEVRACIVtcgglcpginTVIREIVCGLSYmygvdeilgieggyrgfyskntltlspkvVNDIHkrggtilrtsrgghdtnkivdniedrginqvyiiggdgtQKGAALIYKEVEKRGLQVavagipktidndiavIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC
mdhsissrslsrspspsispfnskrMILNPVFHKFNFDSRNFEikplvsrqnrpVVVAVRssnqkvhndgFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAqniviqkdsprgvhfrragprekvyfksdeVRACIVtcgglcpginTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRggtilrtsrgghdtnkivDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAvagipktidndIAVIDKSFGFDTAVEEAQRAINaahvevesvengVGIVKLMGRYSGFISMYatlasrdvvrc
MDHsissrslsrspspsispFNSKRMILNPVFHKFNFDSRNFEIKPLVSRQNRPVVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC
*************************MILNPVFHKFNFDSRNFEIKPLVSRQNRPVVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLAS******
********************************************************************DGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC
******************SPFNSKRMILNPVFHKFNFDSRNFEIKPLVSRQNRPVVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC
*****SSR*LSRSPSPSISPFNSKRMILNPVFHKFNFDSRNFEIKPLVSRQNRPVVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDHSISSRSLSRSPSPSISPFNSKRMILNPVFHKFNFDSRNFEIKPLVSRQNRPVVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAxxxxxxxxxxxxxxxxxxxxxVGIVKLMGRYSGFISMYATLASRDVVRC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query337 2.2.26 [Sep-21-2011]
Q9FKG3 530 6-phosphofructokinase 4, yes no 0.985 0.626 0.741 1e-139
Q94AA4 489 6-phosphofructokinase 3 O no no 0.830 0.572 0.762 1e-126
Q9M076 462 6-phosphofructokinase 6 O no no 0.795 0.580 0.776 1e-125
Q9C5J7 485 6-phosphofructokinase 7 O no no 0.824 0.573 0.746 1e-123
Q9M0F9 473 6-phosphofructokinase 1 O no no 0.795 0.566 0.746 1e-120
Q9FIK0 444 6-phosphofructokinase 2 O no no 0.732 0.556 0.542 2e-73
Q8VYN6 537 6-phosphofructokinase 5, no no 0.617 0.387 0.582 3e-65
Q9FC99 341 6-phosphofructokinase 3 O yes no 0.531 0.524 0.375 1e-25
B9LHK4 356 6-phosphofructokinase OS= yes no 0.534 0.505 0.368 1e-25
A9WCU2 356 6-phosphofructokinase OS= yes no 0.534 0.505 0.368 1e-25
>sp|Q9FKG3|K6PF4_ARATH 6-phosphofructokinase 4, chloroplastic OS=Arabidopsis thaliana GN=PFK4 PE=1 SV=1 Back     alignment and function desciption
 Score =  495 bits (1275), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 247/333 (74%), Positives = 276/333 (82%), Gaps = 1/333 (0%)

Query: 6   SSRSLSRSPSPSISPFN-SKRMILNPVFHKFNFDSRNFEIKPLVSRQNRPVVVAVRSSNQ 64
           +S S   S  P+IS FN S  ++    F       +   + P +  Q R +        +
Sbjct: 3   ASISFLGSTKPNISLFNPSSNVLPRRDFPLPALKLKKVSVLPRILHQKRLIRAQCSDGFK 62

Query: 65  KVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSP 124
              +DGFVLEDVPHLT FLPDLPSYPNPLK+SQAYA+VK+TFVS ED VAQNIV+QK S 
Sbjct: 63  PEEDDGFVLEDVPHLTKFLPDLPSYPNPLKESQAYAIVKRTFVSSEDVVAQNIVVQKGSK 122

Query: 125 RGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEG 184
           RGVHFRRAGPRE+VYF+SDEV+ACIVTCGGLCPGINTVIREIVCGL+ MYGV+ ILGI+G
Sbjct: 123 RGVHFRRAGPRERVYFRSDEVKACIVTCGGLCPGINTVIREIVCGLNNMYGVNNILGIQG 182

Query: 185 GYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDG 244
           GYRGFYSKNT+ L+PKVVNDIHKRGGT L+TSRGGHDT KIVDNI+DRGINQVYIIGG G
Sbjct: 183 GYRGFYSKNTMNLTPKVVNDIHKRGGTFLQTSRGGHDTAKIVDNIQDRGINQVYIIGGGG 242

Query: 245 TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVE 304
           TQKGA  IY+EVE+RGLQVAV+GIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVE
Sbjct: 243 TQKGAEKIYEEVERRGLQVAVSGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVE 302

Query: 305 SVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337
           SVENGVGIVKLMGRYSGFI+M ATLA+RDV  C
Sbjct: 303 SVENGVGIVKLMGRYSGFIAMIATLANRDVDCC 335

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q94AA4|K6PF3_ARATH 6-phosphofructokinase 3 OS=Arabidopsis thaliana GN=PFK3 PE=1 SV=1 Back     alignment and function description
>sp|Q9M076|K6PF6_ARATH 6-phosphofructokinase 6 OS=Arabidopsis thaliana GN=PFK6 PE=1 SV=1 Back     alignment and function description
>sp|Q9C5J7|K6PF7_ARATH 6-phosphofructokinase 7 OS=Arabidopsis thaliana GN=PFK7 PE=1 SV=1 Back     alignment and function description
>sp|Q9M0F9|K6PF1_ARATH 6-phosphofructokinase 1 OS=Arabidopsis thaliana GN=PFK1 PE=1 SV=1 Back     alignment and function description
>sp|Q9FIK0|K6PF2_ARATH 6-phosphofructokinase 2 OS=Arabidopsis thaliana GN=PFK2 PE=1 SV=1 Back     alignment and function description
>sp|Q8VYN6|K6PF5_ARATH 6-phosphofructokinase 5, chloroplastic OS=Arabidopsis thaliana GN=PFK5 PE=1 SV=1 Back     alignment and function description
>sp|Q9FC99|K6PF3_STRCO 6-phosphofructokinase 3 OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=pfkA3 PE=3 SV=1 Back     alignment and function description
>sp|B9LHK4|K6PF_CHLSY 6-phosphofructokinase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=pfkA PE=3 SV=1 Back     alignment and function description
>sp|A9WCU2|K6PF_CHLAA 6-phosphofructokinase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=pfkA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
359490072 533 PREDICTED: 6-phosphofructokinase 4, chlo 0.985 0.622 0.772 1e-146
356535482 522 PREDICTED: 6-phosphofructokinase 4, chlo 0.991 0.639 0.748 1e-142
255539891 522 phosphofructokinase, putative [Ricinus c 0.893 0.576 0.801 1e-140
357442761 543 6-phosphofructokinase [Medicago truncatu 0.884 0.548 0.825 1e-140
224112817 443 predicted protein [Populus trichocarpa] 0.795 0.604 0.895 1e-139
297793715 530 phosphofructokinase family protein [Arab 0.910 0.579 0.778 1e-138
358346077 551 6-phosphofructokinase [Medicago truncatu 0.884 0.540 0.803 1e-138
22328001 530 6-phosphofructokinase 4 [Arabidopsis tha 0.985 0.626 0.741 1e-137
79331832 529 6-phosphofructokinase 4 [Arabidopsis tha 0.985 0.627 0.741 1e-137
449458333 529 PREDICTED: 6-phosphofructokinase 4, chlo 0.845 0.538 0.817 1e-137
>gi|359490072|ref|XP_002282309.2| PREDICTED: 6-phosphofructokinase 4, chloroplastic-like [Vitis vinifera] gi|297745021|emb|CBI38613.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 265/343 (77%), Positives = 291/343 (84%), Gaps = 11/343 (3%)

Query: 1   MDHSISSRSLSRSPSPSISPFNSKRMILNPVFHKFNFDSRNFEIKPLVSRQNRPVVVAVR 60
           MD S+SS   +RS  P   P  S  +     F  ++F SRNF + PL+SRQNR +  A  
Sbjct: 1   MDLSLSS--FARSSIPP--PLKSCNLTSLSNFPNYSFKSRNFSLTPLISRQNRRIR-AQY 55

Query: 61  SSNQKVHNDG------FVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVA 114
           S N      G      FV+++VPHLTNFLPDLPSYPNPL+++ AY +VK+ FVSPED VA
Sbjct: 56  SCNSGSGGGGGGDDDGFVVDEVPHLTNFLPDLPSYPNPLQQNLAYTIVKKNFVSPEDVVA 115

Query: 115 QNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMY 174
           Q IV+QK SPRGVHFRRAGPREKVYFKS+EVRACIVTCGGLCPGINTVIREIVCGL+YMY
Sbjct: 116 QKIVVQKGSPRGVHFRRAGPREKVYFKSEEVRACIVTCGGLCPGINTVIREIVCGLNYMY 175

Query: 175 GVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGI 234
           GV +ILGIEGGYRGFYSKNT+ L+PKVVNDIHKRGGT LRTSRGGHDT+KIVDNI+DRGI
Sbjct: 176 GVHDILGIEGGYRGFYSKNTIQLTPKVVNDIHKRGGTFLRTSRGGHDTDKIVDNIQDRGI 235

Query: 235 NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQR 294
           NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQR
Sbjct: 236 NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQR 295

Query: 295 AINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337
           AINAAHVEVESVENGVGIVKLMGRYSGFI+M+ATLASRDV  C
Sbjct: 296 AINAAHVEVESVENGVGIVKLMGRYSGFIAMFATLASRDVDCC 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356535482|ref|XP_003536274.1| PREDICTED: 6-phosphofructokinase 4, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|255539891|ref|XP_002511010.1| phosphofructokinase, putative [Ricinus communis] gi|223550125|gb|EEF51612.1| phosphofructokinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357442761|ref|XP_003591658.1| 6-phosphofructokinase [Medicago truncatula] gi|355480706|gb|AES61909.1| 6-phosphofructokinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|224112817|ref|XP_002332698.1| predicted protein [Populus trichocarpa] gi|222832952|gb|EEE71429.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297793715|ref|XP_002864742.1| phosphofructokinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297310577|gb|EFH41001.1| phosphofructokinase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|358346077|ref|XP_003637099.1| 6-phosphofructokinase [Medicago truncatula] gi|355503034|gb|AES84237.1| 6-phosphofructokinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|22328001|ref|NP_200966.2| 6-phosphofructokinase 4 [Arabidopsis thaliana] gi|75171244|sp|Q9FKG3.1|K6PF4_ARATH RecName: Full=6-phosphofructokinase 4, chloroplastic; Short=Phosphofructokinase 4; AltName: Full=Phosphohexokinase 4; Flags: Precursor gi|9758473|dbj|BAB09002.1| pyrophosphate-fructose-6-phosphate 1-phosphotransferase-like protein [Arabidopsis thaliana] gi|20466456|gb|AAM20545.1| pyrophosphate-dependent phosphofructo-1-kinase-like protein [Arabidopsis thaliana] gi|22136390|gb|AAM91273.1| pyrophosphate-dependent phosphofructo-1-kinase-like protein [Arabidopsis thaliana] gi|332010109|gb|AED97492.1| 6-phosphofructokinase 4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79331832|ref|NP_001032120.1| 6-phosphofructokinase 4 [Arabidopsis thaliana] gi|332010110|gb|AED97493.1| 6-phosphofructokinase 4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449458333|ref|XP_004146902.1| PREDICTED: 6-phosphofructokinase 4, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
TAIR|locus:2151571 530 PFK4 "phosphofructokinase 4" [ 0.884 0.562 0.795 9.9e-126
TAIR|locus:2136849 489 PFK3 "phosphofructokinase 3" [ 0.827 0.570 0.765 2.1e-116
TAIR|locus:2165046 485 PFK7 "phosphofructokinase 7" [ 0.824 0.573 0.746 3.5e-114
TAIR|locus:2134108 462 PFK6 "phosphofructokinase 6" [ 0.795 0.580 0.776 5.8e-114
TAIR|locus:2118249 473 PFK1 "phosphofructokinase 1" [ 0.830 0.591 0.719 1.6e-109
TAIR|locus:2160897 444 PFK2 "phosphofructokinase 2" [ 0.732 0.556 0.542 1.7e-68
TAIR|locus:2041208 537 PFK5 "phosphofructokinase 5" [ 0.611 0.383 0.588 3.7e-64
TIGR_CMR|CHY_1349 361 CHY_1349 "phosphofructokinase" 0.534 0.498 0.367 1.9e-26
UNIPROTKB|P65690 343 pfkA "6-phosphofructokinase" [ 0.531 0.521 0.383 1.8e-25
TIGR_CMR|CHY_1143 321 CHY_1143 "6-phosphofructokinas 0.516 0.542 0.385 4.2e-24
TAIR|locus:2151571 PFK4 "phosphofructokinase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
 Identities = 237/298 (79%), Positives = 262/298 (87%)

Query:    40 RNFEIKPLVSRQNRPVVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAY 99
             +   + P +  Q R +        +   +DGFVLEDVPHLT FLPDLPSYPNPLK+SQAY
Sbjct:    38 KKVSVLPRILHQKRLIRAQCSDGFKPEEDDGFVLEDVPHLTKFLPDLPSYPNPLKESQAY 97

Query:   100 AVVKQTFVSPEDAVAQNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGI 159
             A+VK+TFVS ED VAQNIV+QK S RGVHFRRAGPRE+VYF+SDEV+ACIVTCGGLCPGI
Sbjct:    98 AIVKRTFVSSEDVVAQNIVVQKGSKRGVHFRRAGPRERVYFRSDEVKACIVTCGGLCPGI 157

Query:   160 NTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG 219
             NTVIREIVCGL+ MYGV+ ILGI+GGYRGFYSKNT+ L+PKVVNDIHKRGGT L+TSRGG
Sbjct:   158 NTVIREIVCGLNNMYGVNNILGIQGGYRGFYSKNTMNLTPKVVNDIHKRGGTFLQTSRGG 217

Query:   220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI 279
             HDT KIVDNI+DRGINQVYIIGG GTQKGA  IY+EVE+RGLQVAV+GIPKTIDNDIAVI
Sbjct:   218 HDTAKIVDNIQDRGINQVYIIGGGGTQKGAEKIYEEVERRGLQVAVSGIPKTIDNDIAVI 277

Query:   280 DKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337
             DKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFI+M ATLA+RDV  C
Sbjct:   278 DKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFIAMIATLANRDVDCC 335
GO:0003872 "6-phosphofructokinase activity" evidence=IEA;ISS;IDA
GO:0005524 "ATP binding" evidence=IEA
GO:0005945 "6-phosphofructokinase complex" evidence=IEA;ISS
GO:0006096 "glycolysis" evidence=IEA;ISS;IDA
GO:0009507 "chloroplast" evidence=ISM;IDA
TAIR|locus:2136849 PFK3 "phosphofructokinase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165046 PFK7 "phosphofructokinase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2134108 PFK6 "phosphofructokinase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118249 PFK1 "phosphofructokinase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160897 PFK2 "phosphofructokinase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041208 PFK5 "phosphofructokinase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1349 CHY_1349 "phosphofructokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|P65690 pfkA "6-phosphofructokinase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1143 CHY_1143 "6-phosphofructokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FKG3K6PF4_ARATH2, ., 7, ., 1, ., 1, 10.74170.98510.6264yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.1.110.914
3rd Layer2.7.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
PLN02564 484 PLN02564, PLN02564, 6-phosphofructokinase 0.0
PRK06830 443 PRK06830, PRK06830, diphosphate--fructose-6-phosph 1e-110
PTZ00286 459 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Prov 1e-108
PLN02884 411 PLN02884, PLN02884, 6-phosphofructokinase 4e-92
COG0205 347 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate 8e-50
PRK03202 320 PRK03202, PRK03202, 6-phosphofructokinase; Provisi 1e-42
TIGR02483 324 TIGR02483, PFK_mixed, phosphofructokinase 2e-42
cd00363 338 cd00363, PFK, Phosphofructokinase, a key regulator 3e-31
TIGR02482 301 TIGR02482, PFKA_ATP, 6-phosphofructokinase 4e-30
cd00763 317 cd00763, Bacterial_PFK, Phosphofructokinase, a key 7e-26
pfam00365279 pfam00365, PFK, Phosphofructokinase 1e-24
PRK14071 360 PRK14071, PRK14071, 6-phosphofructokinase; Provisi 6e-23
PTZ00287 1419 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisi 2e-21
PTZ00468 1328 PTZ00468, PTZ00468, phosphofructokinase family pro 1e-15
TIGR02477 539 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosp 7e-15
cd00765 550 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a 3e-14
TIGR02478 746 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukar 7e-14
PRK06555 403 PRK06555, PRK06555, pyrophosphate--fructose-6-phos 5e-13
TIGR02478 746 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukar 1e-12
PRK07085 555 PRK07085, PRK07085, diphosphate--fructose-6-phosph 5e-12
PRK14072 416 PRK14072, PRK14072, 6-phosphofructokinase; Provisi 1e-11
PLN03028 610 PLN03028, PLN03028, pyrophosphate--fructose-6-phos 2e-10
cd00764 762 cd00764, Eukaryotic_PFK, Phosphofructokinase, a ke 4e-10
cd00764 762 cd00764, Eukaryotic_PFK, Phosphofructokinase, a ke 7e-10
PLN02251 568 PLN02251, PLN02251, pyrophosphate-dependent phosph 2e-08
>gnl|CDD|178178 PLN02564, PLN02564, 6-phosphofructokinase Back     alignment and domain information 
 Score =  585 bits (1510), Expect = 0.0
 Identities = 225/280 (80%), Positives = 255/280 (91%), Gaps = 2/280 (0%)

Query: 60  RSSNQKVHN--DGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNI 117
            SS  K+     G+VLEDVPHLT++LPDLP+YPNPL+ + AY+VVKQ FV+ +D VAQ I
Sbjct: 1   GSSKPKIVTGDAGYVLEDVPHLTDYLPDLPTYPNPLQDNPAYSVVKQYFVNEDDTVAQKI 60

Query: 118 VIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVD 177
           V+ KDSPRG HFRRAGPR+KVYF+SDEVRACIVTCGGLCPG+NTVIREIVCGLSYMYGV 
Sbjct: 61  VVHKDSPRGTHFRRAGPRQKVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVT 120

Query: 178 EILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQV 237
            ILGI+GGYRGFYS+NT+ L+PKVVNDIHKRGGTIL TSRGGHDT+KIVD+I+DRGINQV
Sbjct: 121 RILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQV 180

Query: 238 YIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 297
           YIIGGDGTQKGA++IY+E+ +RGL+VAVAGIPKTIDNDI VIDKSFGFDTAVEEAQRAIN
Sbjct: 181 YIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAIN 240

Query: 298 AAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337
           AAHVE ESVENG+G+VKLMGRYSGFI+MYATLASRDV  C
Sbjct: 241 AAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCC 280

Length = 484
>gnl|CDD|235869 PRK06830, PRK06830, diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>gnl|CDD|185539 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Provisional Back     alignment and domain information
>gnl|CDD|178472 PLN02884, PLN02884, 6-phosphofructokinase Back     alignment and domain information
>gnl|CDD|223283 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|235111 PRK03202, PRK03202, 6-phosphofructokinase; Provisional Back     alignment and domain information
>gnl|CDD|233887 TIGR02483, PFK_mixed, phosphofructokinase Back     alignment and domain information
>gnl|CDD|238216 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|213713 TIGR02482, PFKA_ATP, 6-phosphofructokinase Back     alignment and domain information
>gnl|CDD|238388 cd00763, Bacterial_PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|109425 pfam00365, PFK, Phosphofructokinase Back     alignment and domain information
>gnl|CDD|184487 PRK14071, PRK14071, 6-phosphofructokinase; Provisional Back     alignment and domain information
>gnl|CDD|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional Back     alignment and domain information
>gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein; Provisional Back     alignment and domain information
>gnl|CDD|131530 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosphate 1-phosphotransferase Back     alignment and domain information
>gnl|CDD|238390 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type Back     alignment and domain information
>gnl|CDD|180620 PRK06555, PRK06555, pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated Back     alignment and domain information
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type Back     alignment and domain information
>gnl|CDD|235930 PRK07085, PRK07085, diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>gnl|CDD|237600 PRK14072, PRK14072, 6-phosphofructokinase; Provisional Back     alignment and domain information
>gnl|CDD|215543 PLN03028, PLN03028, pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>gnl|CDD|238389 cd00764, Eukaryotic_PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|238389 cd00764, Eukaryotic_PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|215140 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 337
PLN02564 484 6-phosphofructokinase 100.0
PRK06830 443 diphosphate--fructose-6-phosphate 1-phosphotransfe 100.0
PTZ00286 459 6-phospho-1-fructokinase; Provisional 100.0
PLN02884 411 6-phosphofructokinase 100.0
cd00764 762 Eukaryotic_PFK Phosphofructokinase, a key regulato 100.0
TIGR02478 745 6PF1K_euk 6-phosphofructokinase, eukaryotic type. 100.0
cd00363 338 PFK Phosphofructokinase, a key regulatory enzyme i 100.0
TIGR02482 301 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokin 100.0
PLN03028 610 pyrophosphate--fructose-6-phosphate 1-phosphotrans 100.0
cd00763 317 Bacterial_PFK Phosphofructokinase, a key regulator 100.0
COG0205 347 PfkA 6-phosphofructokinase [Carbohydrate transport 100.0
TIGR02477 539 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosp 100.0
PF00365282 PFK: Phosphofructokinase; InterPro: IPR000023 The 100.0
PRK06555 403 pyrophosphate--fructose-6-phosphate 1-phosphotrans 100.0
cd00765 550 Pyrophosphate_PFK Phosphofructokinase, a key regul 100.0
PRK07085 555 diphosphate--fructose-6-phosphate 1-phosphotransfe 100.0
PRK03202 320 6-phosphofructokinase; Provisional 100.0
PRK14072 416 6-phosphofructokinase; Provisional 100.0
PLN02251 568 pyrophosphate-dependent phosphofructokinase 100.0
TIGR02483 324 PFK_mixed phosphofructokinase. Members of this fam 100.0
PRK14071 360 6-phosphofructokinase; Provisional 100.0
cd00764 762 Eukaryotic_PFK Phosphofructokinase, a key regulato 100.0
TIGR02478 745 6PF1K_euk 6-phosphofructokinase, eukaryotic type. 100.0
PTZ00468 1328 phosphofructokinase family protein; Provisional 100.0
PTZ00287 1419 6-phosphofructokinase; Provisional 100.0
PTZ00287 1419 6-phosphofructokinase; Provisional 100.0
PTZ00468 1328 phosphofructokinase family protein; Provisional 100.0
KOG2440 666 consensus Pyrophosphate-dependent phosphofructo-1- 100.0
KOG2440666 consensus Pyrophosphate-dependent phosphofructo-1- 100.0
PRK04761 246 ppnK inorganic polyphosphate/ATP-NAD kinase; Revie 93.55
PRK04885 265 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 93.26
PRK14077 287 pnk inorganic polyphosphate/ATP-NAD kinase; Provis 93.26
PRK00561 259 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 92.59
PRK03501 264 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 91.88
PRK03372 306 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 91.42
PRK14075 256 pnk inorganic polyphosphate/ATP-NAD kinase; Provis 91.33
PRK01911 292 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 91.07
TIGR01918431 various_sel_PB selenoprotein B, glycine/betaine/sa 90.96
TIGR01917431 gly_red_sel_B glycine reductase, selenoprotein B. 90.96
PRK04539 296 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 90.3
PRK02649 305 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 90.21
PF01513 285 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Me 90.16
PRK03378 292 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 90.11
COG3199 355 Predicted inorganic polyphosphate/ATP-NAD kinase [ 89.87
PRK13337 304 putative lipid kinase; Reviewed 89.22
PLN02935 508 Bifunctional NADH kinase/NAD(+) kinase 88.28
cd06321 271 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-b 88.11
PRK11914 306 diacylglycerol kinase; Reviewed 87.79
PRK01231 295 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 87.73
PLN02929 301 NADH kinase 87.54
PRK13055 334 putative lipid kinase; Reviewed 87.45
PRK13054 300 lipid kinase; Reviewed 87.37
PRK02231 272 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 86.69
PRK03708 277 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 85.53
PRK02645 305 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 85.3
PRK02155 291 ppnK NAD(+)/NADH kinase family protein; Provisiona 83.93
PRK01185 271 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 83.64
PLN02958 481 diacylglycerol kinase/D-erythro-sphingosine kinase 83.23
TIGR03702 293 lip_kinase_YegS lipid kinase YegS. Members of this 83.16
PRK13059 295 putative lipid kinase; Reviewed 83.02
PLN02727 986 NAD kinase 82.44
PRK14076 569 pnk inorganic polyphosphate/ATP-NAD kinase; Provis 81.74
COG1570 440 XseA Exonuclease VII, large subunit [DNA replicati 81.68
PRK00861 300 putative lipid kinase; Reviewed 80.57
>PLN02564 6-phosphofructokinase Back     alignment and domain information 
Probab=100.00  E-value=7.9e-81  Score=628.83  Aligned_cols=279  Identities=80%  Similarity=1.310  Sum_probs=269.5

Q ss_pred             cCCCcceeccccccccccCCCCcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhhccCCCccc
Q 019697           49 SRQNRPVVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRGVH  128 (337)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~eaV~~l~~~~p~~p~~~~pL~~n~~~r~~~~~~V~~t~~V~~~~~~~~~~~r~~~  128 (337)
                      .++.|+++|+          .||++|+||||.+++|+.|++++||..|++++.....||++++.|+..+..++...++.+
T Consensus         2 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~   71 (484)
T PLN02564          2 SSKPKIVTGD----------AGYVLEDVPHLTDYLPDLPTYPNPLQDNPAYSVVKQYFVNEDDTVAQKIVVHKDSPRGTH   71 (484)
T ss_pred             CCcCccccCC----------CceeeccCcchhhcCCCcCCCCCccCCCcccccccceEeCCCCeEEEeecccccccCCcc
Confidence            4678899988          999999999999999999999999999999999999999999999998766666677899


Q ss_pred             ccccCcccccccCCCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhcc
Q 019697          129 FRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR  208 (337)
Q Consensus       129 F~~agpr~~~~f~~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~  208 (337)
                      |++||||+++||+|+++|||||||||+|||||+|||++|+.+.+.|++.+||||++||+||+++++++|+|+.|++|+++
T Consensus        72 ~~~agpr~~i~f~p~~~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~  151 (484)
T PLN02564         72 FRRAGPRQKVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVVNDIHKR  151 (484)
T ss_pred             ceecCCcceEEEcCcceEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCeEeCCHHHhhcHhhC
Confidence            99999999999999999999999999999999999999999987888889999999999999999999999999999999


Q ss_pred             CCcceeccCCCCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhH
Q 019697          209 GGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA  288 (337)
Q Consensus       209 GGS~LGTsR~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTA  288 (337)
                      |||+|||||+++++++++++|++++||+||+||||||+++|.+|++++++++++|+||||||||||||++||+|||||||
T Consensus       152 GGTiLGTsR~~~~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTA  231 (484)
T PLN02564        152 GGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTA  231 (484)
T ss_pred             CCceeccCCCcchHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697          289 VEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC  337 (337)
Q Consensus       289 v~~~~~~i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c  337 (337)
                      +++++++|++++++|.|+++||||||+|||+|||||++++||++.+|+|
T Consensus       232 v~~~~~aI~~i~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~gad~i  280 (484)
T PLN02564        232 VEEAQRAINAAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCC  280 (484)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEEEECCCCHHHHHHHHHHhhCCCCEE
Confidence            9999999999999999998899999999999999999999999999987

>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>PTZ00286 6-phospho-1-fructokinase; Provisional Back     alignment and domain information
>PLN02884 6-phosphofructokinase Back     alignment and domain information
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type Back     alignment and domain information
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>TIGR02482 PFKA_ATP 6-phosphofructokinase Back     alignment and domain information
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase Back     alignment and domain information
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes [] Back     alignment and domain information
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated Back     alignment and domain information
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>PRK03202 6-phosphofructokinase; Provisional Back     alignment and domain information
>PRK14072 6-phosphofructokinase; Provisional Back     alignment and domain information
>PLN02251 pyrophosphate-dependent phosphofructokinase Back     alignment and domain information
>TIGR02483 PFK_mixed phosphofructokinase Back     alignment and domain information
>PRK14071 6-phosphofructokinase; Provisional Back     alignment and domain information
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type Back     alignment and domain information
>PTZ00468 phosphofructokinase family protein; Provisional Back     alignment and domain information
>PTZ00287 6-phosphofructokinase; Provisional Back     alignment and domain information
>PTZ00287 6-phosphofructokinase; Provisional Back     alignment and domain information
>PTZ00468 phosphofructokinase family protein; Provisional Back     alignment and domain information
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed Back     alignment and domain information
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family Back     alignment and domain information
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B Back     alignment and domain information
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2 Back     alignment and domain information
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only] Back     alignment and domain information
>PRK13337 putative lipid kinase; Reviewed Back     alignment and domain information
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase Back     alignment and domain information
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>PRK11914 diacylglycerol kinase; Reviewed Back     alignment and domain information
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PLN02929 NADH kinase Back     alignment and domain information
>PRK13055 putative lipid kinase; Reviewed Back     alignment and domain information
>PRK13054 lipid kinase; Reviewed Back     alignment and domain information
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional Back     alignment and domain information
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase Back     alignment and domain information
>TIGR03702 lip_kinase_YegS lipid kinase YegS Back     alignment and domain information
>PRK13059 putative lipid kinase; Reviewed Back     alignment and domain information
>PLN02727 NAD kinase Back     alignment and domain information
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00861 putative lipid kinase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
2hig_A 487 Crystal Structure Of Phosphofructokinase Apoenzyme 6e-46
1mto_A 319 Crystal Structure Of A Phosphofructokinase Mutant F 8e-20
3pfk_A 319 Phosphofructokinase. Structure And Control Length = 3e-19
6pfk_A 319 Phosphofructokinase, Inhibited T-State Length = 319 3e-19
1pfk_A 320 Crystal Structure Of The Complex Of Phosphofructoki 1e-18
4a3s_A 319 Crystal Structure Of Pfk From Bacillus Subtilis Len 1e-17
1kzh_A 555 Structure Of A Pyrophosphate-dependent Phosphofruct 2e-14
1zxx_A 319 The Crystal Structure Of Phosphofructokinase From L 2e-13
3o8o_A 787 Structure Of Phosphofructokinase From Saccharomyces 5e-09
3opy_B 941 Crystal Structure Of Pichia Pastoris Phosphofructok 7e-09
3opy_A 989 Crystal Structure Of Pichia Pastoris Phosphofructok 1e-07
3o8l_A 762 Structure Of Phosphofructokinase From Rabbit Skelet 3e-07
3o8o_B 766 Structure Of Phosphofructokinase From Saccharomyces 1e-06
3k2q_A 420 Crystal Structure Of Pyrophosphate-Dependent Phosph 7e-06
>pdb|2HIG|A Chain A, Crystal Structure Of Phosphofructokinase Apoenzyme From Trypanosoma Brucei. Length = 487 Back     alignment and structure 
Iteration: 1

 Score =  181 bits (458), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 103/246 (41%), Positives = 143/246 (58%), Gaps = 16/246 (6%)
Query: 89  YPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRG--------VHFRRAGPREKVYF 140
           YPNP KK  +    +  F    D +  N    +D P          +    A  R +++F
Sbjct: 39  YPNPSKKYSS----RTEFRDKTDYIMYNPR-PRDEPSSENPVSVSPLLCELAAARSRIHF 93
Query: 141 KSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLT---L 197
              E    IVTCGG+CPG+N VIR I      +Y V  ++G   GY G   K + T   L
Sbjct: 94  NPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIEL 153
Query: 198 SPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVE 257
               V +IH  GGTIL +SRG  D  ++VD +E  G+N ++ +GGDGTQ+GA +I +E +
Sbjct: 154 HRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAK 213
Query: 258 KRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMG 317
           +RG+ ++V G+PKTIDND++   ++FGF TAVE+A +AI AA+ E  S   GVG+VKLMG
Sbjct: 214 RRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLMG 273
Query: 318 RYSGFI 323
           R SGFI
Sbjct: 274 RDSGFI 279
>pdb|1MTO|A Chain A, Crystal Structure Of A Phosphofructokinase Mutant From Bacillus Stearothermophilus Bound With Fructose-6-Phosphate Length = 319 Back     alignment and structure
>pdb|3PFK|A Chain A, Phosphofructokinase. Structure And Control Length = 319 Back     alignment and structure
>pdb|6PFK|A Chain A, Phosphofructokinase, Inhibited T-State Length = 319 Back     alignment and structure
>pdb|1PFK|A Chain A, Crystal Structure Of The Complex Of Phosphofructokinase From Escherichia Coli With Its Reaction Products Length = 320 Back     alignment and structure
>pdb|4A3S|A Chain A, Crystal Structure Of Pfk From Bacillus Subtilis Length = 319 Back     alignment and structure
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase From The Lyme Disease Spirochete Borrelia Burgdorferi Length = 555 Back     alignment and structure
>pdb|1ZXX|A Chain A, The Crystal Structure Of Phosphofructokinase From Lactobacillus Delbrueckii Length = 319 Back     alignment and structure
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces Cerevisiae Length = 787 Back     alignment and structure
>pdb|3OPY|B Chain B, Crystal Structure Of Pichia Pastoris Phosphofructokinase In The T- State Length = 941 Back     alignment and structure
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase In The T- State Length = 989 Back     alignment and structure
>pdb|3O8L|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal Muscle Length = 762 Back     alignment and structure
>pdb|3O8O|B Chain B, Structure Of Phosphofructokinase From Saccharomyces Cerevisiae Length = 766 Back     alignment and structure
>pdb|3K2Q|A Chain A, Crystal Structure Of Pyrophosphate-Dependent Phosphofructokinase From Marinobacter Aquaeolei, Northeast Structural Genomics Consortium Target Mqr88 Length = 420 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
2hig_A 487 6-phospho-1-fructokinase; transferase; 2.40A {Tryp 1e-127
2f48_A 555 Diphosphate--fructose-6-phosphate 1-phosphotransf; 1e-74
1pfk_A 320 Phosphofructokinase; transferase(phosphotransferas 2e-44
4a3s_A 319 6-phosphofructokinase; transferase, glycolysis, de 6e-44
1zxx_A 319 6-phosphofructokinase; allosteric regulation, lact 9e-44
3o8o_A 787 6-phosphofructokinase subunit alpha; transferase; 2e-40
3o8o_A 787 6-phosphofructokinase subunit alpha; transferase; 2e-33
3o8o_B 766 6-phosphofructokinase subunit beta; transferase; H 3e-40
3o8o_B 766 6-phosphofructokinase subunit beta; transferase; H 2e-32
3opy_A 989 6-phosphofructo-1-kinase alpha-subunit; ATP bindin 3e-40
3opy_A 989 6-phosphofructo-1-kinase alpha-subunit; ATP bindin 3e-34
3o8l_A 762 6-phosphofructokinase, muscle type; transferase; H 1e-39
3o8l_A 762 6-phosphofructokinase, muscle type; transferase; H 5e-34
3hno_A 419 Pyrophosphate-dependent phosphofructokinase; struc 7e-39
3opy_B 941 6-phosphofructo-1-kinase beta-subunit; ATP binding 6e-38
3opy_B 941 6-phosphofructo-1-kinase beta-subunit; ATP binding 5e-34
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A* Length = 487 Back     alignment and structure
 Score =  371 bits (955), Expect = e-127
 Identities = 110/287 (38%), Positives = 158/287 (55%), Gaps = 16/287 (5%)

Query: 60  RSSNQKVHNDGFVLEDVPHLTNFLPDLP--SYPNPLKKSQAYAVVKQTFVSPEDAVAQNI 117
           R +++ V     +L  V      +  LP   YPNP KK  +       F    D +  N 
Sbjct: 8   RVTSKLVKAHRAMLNSVTQEDLKVDRLPGADYPNPSKKYSSR----TEFRDKTDYIMYNP 63

Query: 118 VIQKD-------SPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGL 170
             + +       S   +    A  R +++F   E    IVTCGG+CPG+N VIR I    
Sbjct: 64  RPRDEPSSENPVSVSPLLCELAAARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTG 123

Query: 171 SYMYGVDEILGIEGGYRGFY---SKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVD 227
             +Y V  ++G   GY G     S+  + L    V +IH  GGTIL +SRG  D  ++VD
Sbjct: 124 INVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVD 183

Query: 228 NIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT 287
            +E  G+N ++ +GGDGTQ+GA +I +E ++RG+ ++V G+PKTIDND++   ++FGF T
Sbjct: 184 TLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQT 243

Query: 288 AVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDV 334
           AVE+A +AI AA+ E  S   GVG+VKLMGR SGFI+  A +AS   
Sbjct: 244 AVEKAVQAIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQA 290
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A* Length = 555 Back     alignment and structure
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A Length = 320 Back     alignment and structure
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A* Length = 319 Back     alignment and structure
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp} Length = 319 Back     alignment and structure
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Length = 787 Back     alignment and structure
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Length = 787 Back     alignment and structure
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Length = 766 Back     alignment and structure
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Length = 766 Back     alignment and structure
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 989 Back     alignment and structure
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 989 Back     alignment and structure
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A* Length = 762 Back     alignment and structure
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A* Length = 762 Back     alignment and structure
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A Length = 419 Back     alignment and structure
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 941 Back     alignment and structure
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 941 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
2hig_A 487 6-phospho-1-fructokinase; transferase; 2.40A {Tryp 100.0
3o8o_A 787 6-phosphofructokinase subunit alpha; transferase; 100.0
3o8o_B 766 6-phosphofructokinase subunit beta; transferase; H 100.0
3o8l_A 762 6-phosphofructokinase, muscle type; transferase; H 100.0
3opy_B 941 6-phosphofructo-1-kinase beta-subunit; ATP binding 100.0
3opy_A 989 6-phosphofructo-1-kinase alpha-subunit; ATP bindin 100.0
2f48_A 555 Diphosphate--fructose-6-phosphate 1-phosphotransf; 100.0
1zxx_A 319 6-phosphofructokinase; allosteric regulation, lact 100.0
1pfk_A 320 Phosphofructokinase; transferase(phosphotransferas 100.0
4a3s_A 319 6-phosphofructokinase; transferase, glycolysis, de 100.0
3hno_A 419 Pyrophosphate-dependent phosphofructokinase; struc 100.0
3o8l_A 762 6-phosphofructokinase, muscle type; transferase; H 100.0
3o8o_B 766 6-phosphofructokinase subunit beta; transferase; H 100.0
3o8o_A 787 6-phosphofructokinase subunit alpha; transferase; 100.0
3opy_A 989 6-phosphofructo-1-kinase alpha-subunit; ATP bindin 100.0
3opy_B 941 6-phosphofructo-1-kinase beta-subunit; ATP binding 100.0
2an1_A 292 Putative kinase; structural genomics, PSI, protein 95.16
2i2c_A 272 Probable inorganic polyphosphate/ATP-NAD kinase 1; 94.3
1z0s_A 278 Probable inorganic polyphosphate/ATP-NAD kinase; A 93.14
1yt5_A 258 Inorganic polyphosphate/ATP-NAD kinase; domain 1: 87.73
3l49_A 291 ABC sugar (ribose) transporter, periplasmic substr 87.7
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A* Back     alignment and structure
Probab=100.00  E-value=8.5e-71  Score=556.67  Aligned_cols=265  Identities=40%  Similarity=0.665  Sum_probs=239.7

Q ss_pred             CCcccccccchhhcCCCC--CCCCCCCCCCcccccccccccccChHHHHHHHhhccC-------CCcccccccCcccccc
Q 019697           69 DGFVLEDVPHLTNFLPDL--PSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-------PRGVHFRRAGPREKVY  139 (337)
Q Consensus        69 ~~~~~eaV~~l~~~~p~~--p~~~~pL~~n~~~r~~~~~~V~~t~~V~~~~~~~~~~-------~r~~~F~~agpr~~~~  139 (337)
                      -.+.+++|+.+.-..|.+  |++++||..|..    ...||.+++.|+..+....+.       .....|+++|||+++|
T Consensus        17 ~~~~~~~~~~~~~~i~~lg~~~~~~p~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~i~   92 (487)
T 2hig_A           17 HRAMLNSVTQEDLKVDRLPGADYPNPSKKYSS----RTEFRDKTDYIMYNPRPRDEPSSENPVSVSPLLCELAAARSRIH   92 (487)
T ss_dssp             TTCSCSSCCTTTTCCEECSCCCEECTTCCGGG----GGGSBSSCCEEESCCCBCC-----CCBBSCCCEEEECCCBSEES
T ss_pred             ccccccCCCccccccCcCCCCCCCCcccccCC----CCeeeCCCCEEEEeeeccCCCccccccccchHHHHHcCCcceee
Confidence            456788888875555544  778999977655    588999999998765332221       1234799999999999


Q ss_pred             cCCCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccC---CCeeeCChhhHhchhccCCcceecc
Q 019697          140 FKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYS---KNTLTLSPKVVNDIHKRGGTILRTS  216 (337)
Q Consensus       140 f~~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~---~~~~~L~~~~V~~~~~~GGS~LGTs  216 (337)
                      |+++.+||||+||||||||||++||++|+++.+.|+..+||||++||+||++   +++++|+|+.|++|+++|||+|||+
T Consensus        93 f~~~~~rIgIltsGGdaPGmNaaIravv~~a~~~~g~~~V~Gi~~G~~GLl~~~~~~~~~L~~~~V~~i~~~GGTiLGTs  172 (487)
T 2hig_A           93 FNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSS  172 (487)
T ss_dssp             SCGGGCEEEEEECSSCCTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTTCEEECHHHHTTGGGSSSCSSCCC
T ss_pred             ecCCCcEEEEEecCCCcchhhHHHHHHHHHHHHhCCCcEEEEEccCHHHhhhccCCCEEECCHHHHHHHHhCCCCeeccC
Confidence            9999999999999999999999999999999766777799999999999974   6999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHH
Q 019697          217 RGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAI  296 (337)
Q Consensus       217 R~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i  296 (337)
                      |++++.++++++|++++||+||+||||||+++|.+|++++++++++|+|||||||||||+++||+|||||||+++++++|
T Consensus       173 R~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~T~GFdTAv~~~~eaI  252 (487)
T 2hig_A          173 RGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAI  252 (487)
T ss_dssp             CSCCCHHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTTHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697          297 NAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC  337 (337)
Q Consensus       297 ~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c  337 (337)
                      ++++++|.|+++||||||+|||+|||||+++|||+|++|+|
T Consensus       253 d~i~~tA~Sh~~rv~vVEVMGR~aG~LAl~agLA~g~ad~i  293 (487)
T 2hig_A          253 RAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANIC  293 (487)
T ss_dssp             HHHHHHHHTSTTEEEEEEECCSSCCHHHHHHHHHHTCCSEE
T ss_pred             HHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHhhCCCCEE
Confidence            99999999998899999999999999999999999988876
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A* Back     alignment and structure
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Back     alignment and structure
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Back     alignment and structure
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A* Back     alignment and structure
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp} Back     alignment and structure
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A Back     alignment and structure
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A* Back     alignment and structure
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A Back     alignment and structure
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A* Back     alignment and structure
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Back     alignment and structure
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Back     alignment and structure
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium} Back     alignment and structure
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A* Back     alignment and structure
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A* Back     alignment and structure
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} Back     alignment and structure
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 337
d2f48a1 550 c.89.1.1 (A:4-553) Pyrophosphate-dependent phospho 1e-54
d4pfka_ 319 c.89.1.1 (A:) ATP-dependent phosphofructokinase {B 1e-38
d1pfka_ 320 c.89.1.1 (A:) ATP-dependent phosphofructokinase {E 5e-37
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent phosphofructokinase {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Length = 550 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphofructokinase
superfamily: Phosphofructokinase
family: Phosphofructokinase
domain: Pyrophosphate-dependent phosphofructokinase
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

 Score =  185 bits (470), Expect = 1e-54
 Identities = 61/261 (23%), Positives = 109/261 (41%), Gaps = 17/261 (6%)

Query: 87  PSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPR-----GVHFRRAGPREKVYFK 141
           P  PN LKK   +  +   +    +A+     +++          + F            
Sbjct: 12  PKLPNILKK--DFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFTEGESSLS---F 66

Query: 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKV 201
           S  +   I+  GG  PG + VI  +   +       ++ G +GG  G    + + L+  +
Sbjct: 67  SKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESL 126

Query: 202 VNDIHKRGGTILRTSRGGH-----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEV 256
           +N     GG  + +S           NK +   ++  +N + IIGGD +   AA++ +  
Sbjct: 127 INSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYF 186

Query: 257 EKRGLQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVK 314
           +K G  + V G+PKTID D+    I+ SFGFD+A +     I     +  S +     VK
Sbjct: 187 KKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVK 246

Query: 315 LMGRYSGFISMYATLASRDVV 335
           LMGR +  +++   L +   +
Sbjct: 247 LMGRSASHVALECALKTHPNI 267
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 319 Back     information, alignment and structure
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]} Length = 320 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
d2f48a1 550 Pyrophosphate-dependent phosphofructokinase {Lyme 100.0
d1pfka_ 320 ATP-dependent phosphofructokinase {Escherichia col 100.0
d4pfka_ 319 ATP-dependent phosphofructokinase {Bacillus stearo 100.0
d2qv7a1 312 Diacylglycerol kinase DgkB {Staphylococcus aureus 89.05
d1u0ta_ 302 Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycob 88.65
d2bona1 295 Lipid kinase YegS {Escherichia coli [TaxId: 562]} 87.32
d1z0sa1 249 Inorganic polyphosphate/ATP-NAD kinase PpnK {Archa 87.16
d1ig3a2169 Thiamin pyrophosphokinase, catalytic domain {Mouse 84.15
d1s1ma1 258 CTP synthase PyrG, C-terminal domain {Escherichia 81.8
d1jq5a_ 366 Glycerol dehydrogenase {Bacillus stearothermophilu 81.34
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent phosphofructokinase {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphofructokinase
superfamily: Phosphofructokinase
family: Phosphofructokinase
domain: Pyrophosphate-dependent phosphofructokinase
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=100.00  E-value=2.3e-57  Score=462.75  Aligned_cols=208  Identities=26%  Similarity=0.411  Sum_probs=189.5

Q ss_pred             CcccccccCcccccccCCCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhc
Q 019697          125 RGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVND  204 (337)
Q Consensus       125 r~~~F~~agpr~~~~f~~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~  204 (337)
                      +...|.++.+.  .. ..+.+|||||||||||||||+||+++++++...+++.+||||++||+||+++++++|+|+.++.
T Consensus        53 p~~~~~~~~~~--~~-~~~~~rIgIl~sGG~aPG~N~vI~gvv~~~~~~~~~~~v~G~~~G~~GL~~~~~~~L~~~~v~~  129 (550)
T d2f48a1          53 PIISFTEGESS--LS-FSKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINS  129 (550)
T ss_dssp             CCEEEEESCCC--CS-CCSCCEEEEEEBSSCCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHH
T ss_pred             ceeeeccCCCC--CC-cCCCCEEEEECcCCCcHHHHHHHHHHHHHHHHhCCCCEEEEECcchHHhcCCCEEECCHHHHhh
Confidence            44567664332  22 2467899999999999999999999999998778889999999999999999999999999999


Q ss_pred             hhccCCcceeccCC-C----CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccc-
Q 019697          205 IHKRGGTILRTSRG-G----HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV-  278 (337)
Q Consensus       205 ~~~~GGS~LGTsR~-~----~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~g-  278 (337)
                      |+++||+.|||+|. +    +++++++++|++++||+||+||||||+++|..|+|++++++.+|+|||||||||||+++ 
T Consensus       130 ~~~~GG~~l~~s~r~~~~~~e~~~~i~~~l~~~~Id~LviIGGd~S~~~a~~Lae~~~~~~~~i~vigvPKTIDNDl~~~  209 (550)
T d2f48a1         130 YRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRND  209 (550)
T ss_dssp             HTTCCSSTTTCCBCCCCCSHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCS
T ss_pred             HHhCCCcEecCCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECChHHHHHHHHHHHHHHHhCCCccEEEecccccCCCCCc
Confidence            99999998877754 2    46899999999999999999999999999999999999999999999999999999966 


Q ss_pred             -cCcccCchhHHHHHHHHHHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCC
Q 019697          279 -IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVR  336 (337)
Q Consensus       279 -tD~S~GfdTAv~~~~~~i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~  336 (337)
                       ||+|||||||+++++++|++++.||.|++++|||||+|||+|||||++||||+| +|+
T Consensus       210 ~~d~s~GfdTA~~~~~~~i~~l~~da~S~~~~~~~VevMGR~aG~lAl~~alat~-a~~  267 (550)
T d2f48a1         210 HIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVKLMGRSASHVALECALKTH-PNI  267 (550)
T ss_dssp             SCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCTTSCHHHHHHHHHHC-CSE
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHHhhcccceEEEEEecCCCcHHHHHHHHhcC-Cce
Confidence             999999999999999999999999999889999999999999999999999997 444
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1ig3a2 c.100.1.1 (A:10-178) Thiamin pyrophosphokinase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure